Query 002071
Match_columns 973
No_of_seqs 493 out of 4089
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-48 3.7E-53 459.4 25.7 316 186-527 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.5E-39 1.2E-43 379.1 19.4 285 185-519 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-36 6.1E-41 395.9 26.7 312 180-525 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.5E-34 2.9E-38 338.8 24.2 305 182-522 123-449 (591)
5 4ecn_A Leucine-rich repeat pro 99.9 3.4E-24 1.2E-28 260.8 19.1 277 627-935 549-841 (876)
6 3rgz_A Protein brassinosteroid 99.9 1.2E-24 4E-29 267.2 14.0 272 545-848 269-548 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 6.8E-24 2.3E-28 258.1 18.4 325 595-962 488-849 (876)
8 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-23 5.5E-28 246.2 20.5 61 788-848 321-384 (520)
9 3rgz_A Protein brassinosteroid 99.9 2.5E-24 8.5E-29 264.3 14.0 345 545-934 294-717 (768)
10 4eco_A Uncharacterized protein 99.9 6.1E-24 2.1E-28 254.7 15.5 335 560-935 239-601 (636)
11 4eco_A Uncharacterized protein 99.9 6.4E-24 2.2E-28 254.5 14.7 272 545-846 249-544 (636)
12 3o6n_A APL1; leucine-rich repe 99.9 6.1E-23 2.1E-27 231.7 20.2 308 565-935 42-353 (390)
13 3t6q_A CD180 antigen; protein- 99.9 6.2E-23 2.1E-27 246.2 21.0 147 543-700 31-180 (606)
14 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.7E-23 3.3E-27 241.6 22.1 61 788-848 350-413 (562)
15 3oja_B Anopheles plasmodium-re 99.9 9E-23 3.1E-27 243.2 19.8 308 565-935 48-359 (597)
16 4fmz_A Internalin; leucine ric 99.9 1.7E-22 5.8E-27 224.3 18.7 305 565-933 41-345 (347)
17 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-22 4.3E-27 243.5 18.6 360 543-935 30-438 (606)
18 2z81_A CD282 antigen, TOLL-lik 99.9 7.5E-23 2.6E-27 242.4 14.5 151 544-705 25-180 (549)
19 3v47_A TOLL-like receptor 5B a 99.9 4.3E-22 1.5E-26 229.9 20.4 366 543-935 28-409 (455)
20 1o6v_A Internalin A; bacterial 99.9 6E-22 2.1E-26 228.9 20.2 326 545-935 46-389 (466)
21 2z63_A TOLL-like receptor 4, v 99.9 8.8E-23 3E-27 243.1 12.8 145 543-699 26-175 (570)
22 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-21 5E-26 242.3 22.7 350 543-934 22-439 (844)
23 3vq2_A TLR4, TOLL-like recepto 99.9 3.2E-22 1.1E-26 240.0 15.7 105 545-660 56-164 (606)
24 2id5_A Lingo-1, leucine rich r 99.9 8.5E-22 2.9E-26 228.8 17.6 129 568-707 32-162 (477)
25 3bz5_A Internalin-J, INLJ; leu 99.9 3.9E-21 1.3E-25 220.1 22.2 304 563-934 37-352 (457)
26 3t6q_A CD180 antigen; protein- 99.9 1.8E-21 6.2E-26 233.4 20.1 349 545-934 129-536 (606)
27 1o6v_A Internalin A; bacterial 99.9 2.2E-21 7.4E-26 224.3 19.5 306 545-916 68-393 (466)
28 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-21 5.5E-26 229.2 16.2 144 548-709 3-150 (520)
29 3bz5_A Internalin-J, INLJ; leu 99.9 9.7E-21 3.3E-25 216.8 21.1 284 594-935 38-332 (457)
30 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-21 1.3E-25 234.0 18.5 174 543-731 23-201 (680)
31 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-20 4.6E-25 233.7 23.5 276 544-847 47-371 (844)
32 2z63_A TOLL-like receptor 4, v 99.9 1.5E-21 5.3E-26 232.4 14.2 130 544-685 51-189 (570)
33 4fmz_A Internalin; leucine ric 99.9 5.2E-21 1.8E-25 212.2 17.5 286 594-935 40-325 (347)
34 4fcg_A Uncharacterized protein 99.9 5.8E-21 2E-25 209.1 17.1 232 596-931 79-311 (328)
35 2z81_A CD282 antigen, TOLL-lik 99.8 3.8E-21 1.3E-25 227.7 16.0 352 544-933 49-509 (549)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.5E-21 2.2E-25 225.9 17.7 143 548-709 34-181 (562)
37 3o6n_A APL1; leucine-rich repe 99.8 8.9E-21 3E-25 213.9 17.3 287 596-936 43-333 (390)
38 1ziw_A TOLL-like receptor 3; i 99.8 9.2E-21 3.1E-25 230.5 18.2 262 554-847 13-281 (680)
39 3v47_A TOLL-like receptor 5B a 99.8 2.4E-21 8.2E-26 223.7 12.0 334 544-914 53-412 (455)
40 3oja_B Anopheles plasmodium-re 99.8 2E-20 7E-25 222.9 17.2 288 596-937 49-340 (597)
41 2id5_A Lingo-1, leucine rich r 99.8 2.4E-20 8.2E-25 216.5 15.4 298 543-878 30-331 (477)
42 1ogq_A PGIP-2, polygalacturona 99.8 4.2E-21 1.4E-25 209.0 7.6 250 568-849 50-302 (313)
43 4fcg_A Uncharacterized protein 99.8 4E-20 1.4E-24 202.5 11.5 221 567-847 80-310 (328)
44 2ft3_A Biglycan; proteoglycan, 99.8 4.4E-19 1.5E-23 195.2 18.8 273 598-932 54-331 (332)
45 1xku_A Decorin; proteoglycan, 99.8 6.1E-19 2.1E-23 193.9 17.5 293 569-931 32-329 (330)
46 1xku_A Decorin; proteoglycan, 99.8 8.4E-19 2.9E-23 192.8 15.6 242 546-829 32-277 (330)
47 4g8a_A TOLL-like receptor 4; l 99.8 9.4E-19 3.2E-23 211.2 16.7 139 543-693 50-193 (635)
48 1ogq_A PGIP-2, polygalacturona 99.8 1.9E-19 6.4E-24 196.0 9.2 202 598-847 50-253 (313)
49 1jl5_A Outer protein YOPM; leu 99.8 8.5E-18 2.9E-22 192.2 22.2 306 544-935 90-410 (454)
50 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-17 3.7E-22 197.2 21.8 260 598-936 40-299 (622)
51 1jl5_A Outer protein YOPM; leu 99.8 2.8E-17 9.7E-22 187.9 22.9 300 546-935 72-371 (454)
52 2z80_A TOLL-like receptor 2, v 99.7 3.6E-18 1.2E-22 189.6 10.2 252 598-935 52-315 (353)
53 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-20 5.3E-25 217.3 -10.7 372 544-936 2-413 (461)
54 4g8a_A TOLL-like receptor 4; l 99.7 1.9E-17 6.5E-22 199.8 14.8 129 568-708 52-184 (635)
55 3ogk_B Coronatine-insensitive 99.7 2.6E-18 8.8E-23 205.4 6.8 363 546-938 139-530 (592)
56 2ft3_A Biglycan; proteoglycan, 99.7 1E-16 3.5E-21 176.2 17.5 260 547-849 35-305 (332)
57 2z80_A TOLL-like receptor 2, v 99.7 1.5E-17 5.1E-22 184.6 8.4 261 554-848 40-311 (353)
58 2z66_A Variable lymphocyte rec 99.7 1.6E-17 5.4E-22 180.5 7.1 226 568-848 28-258 (306)
59 3zyj_A Leucine-rich repeat-con 99.7 3E-16 1E-20 179.7 17.9 100 598-703 64-166 (440)
60 3zyi_A Leucine-rich repeat-con 99.7 8.1E-17 2.8E-21 185.1 13.1 220 568-847 75-299 (452)
61 2z66_A Variable lymphocyte rec 99.7 5.5E-17 1.9E-21 176.2 10.9 225 598-878 28-259 (306)
62 3zyi_A Leucine-rich repeat-con 99.7 1.9E-16 6.6E-21 181.9 15.0 222 598-878 75-301 (452)
63 1z7x_W Ribonuclease inhibitor; 99.7 2E-19 6.7E-24 208.0 -10.7 347 568-935 3-384 (461)
64 3o53_A Protein LRIM1, AGAP0063 99.7 1.7E-17 5.7E-22 181.0 5.0 220 589-847 25-246 (317)
65 3zyj_A Leucine-rich repeat-con 99.7 1.8E-16 6.2E-21 181.5 13.4 236 550-847 48-288 (440)
66 3ogk_B Coronatine-insensitive 99.7 5.2E-18 1.8E-22 202.8 0.5 358 544-933 111-500 (592)
67 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-15 4.1E-20 179.7 20.6 129 546-705 41-169 (622)
68 3qfl_A MLA10; coiled-coil, (CC 99.7 1.2E-16 4.1E-21 142.4 8.2 81 4-88 1-83 (115)
69 1w5s_A Origin recognition comp 99.7 1.7E-15 5.8E-20 172.1 19.7 301 182-498 21-372 (412)
70 1ozn_A Reticulon 4 receptor; N 99.7 2.7E-16 9.4E-21 168.7 11.9 200 597-847 31-234 (285)
71 1ozn_A Reticulon 4 receptor; N 99.6 2.6E-16 8.9E-21 168.9 9.5 219 550-829 16-239 (285)
72 3o53_A Protein LRIM1, AGAP0063 99.6 2.5E-17 8.4E-22 179.7 1.4 242 565-851 31-275 (317)
73 3oja_A Leucine-rich immune mol 99.6 3.4E-16 1.2E-20 180.8 10.1 210 599-848 35-247 (487)
74 2qen_A Walker-type ATPase; unk 99.6 2.3E-14 8E-19 158.7 23.7 294 180-518 9-348 (350)
75 2p1m_B Transport inhibitor res 99.6 1.7E-17 5.7E-22 198.5 -2.1 367 544-935 104-520 (594)
76 1wwl_A Monocyte differentiatio 99.6 1.6E-16 5.6E-21 172.7 5.6 252 594-934 39-309 (312)
77 3oja_A Leucine-rich immune mol 99.6 1.1E-16 3.7E-21 185.0 2.4 237 566-847 32-271 (487)
78 2fna_A Conserved hypothetical 99.6 1.1E-13 3.8E-18 153.7 25.5 292 181-518 11-356 (357)
79 1wwl_A Monocyte differentiatio 99.6 3.5E-15 1.2E-19 162.2 11.8 201 596-847 93-305 (312)
80 1h6u_A Internalin H; cell adhe 99.6 1.1E-14 3.8E-19 157.7 13.7 190 595-848 38-227 (308)
81 2z62_A TOLL-like receptor 4, v 99.5 1E-14 3.5E-19 155.6 11.3 201 598-847 28-233 (276)
82 2o6q_A Variable lymphocyte rec 99.5 7.5E-14 2.6E-18 148.2 16.8 61 787-847 153-214 (270)
83 3rfs_A Internalin B, repeat mo 99.5 5E-14 1.7E-18 149.7 15.3 101 595-703 38-139 (272)
84 2ast_B S-phase kinase-associat 99.5 2.5E-15 8.7E-20 165.5 4.7 101 570-684 49-153 (336)
85 2ca6_A RAN GTPase-activating p 99.5 1.8E-16 6.1E-21 178.2 -5.2 38 623-660 91-133 (386)
86 4ay9_X Follicle-stimulating ho 99.5 4.1E-14 1.4E-18 156.4 13.4 94 613-708 19-115 (350)
87 2p1m_B Transport inhibitor res 99.5 2.5E-16 8.7E-21 188.2 -4.9 235 565-824 102-347 (594)
88 1p9a_G Platelet glycoprotein I 99.5 4.7E-14 1.6E-18 151.1 13.2 124 564-703 6-130 (290)
89 3rfs_A Internalin B, repeat mo 99.5 2.6E-14 8.8E-19 151.9 10.5 129 564-707 37-167 (272)
90 2z62_A TOLL-like receptor 4, v 99.5 3.9E-14 1.3E-18 151.1 11.6 206 568-829 28-238 (276)
91 2xwt_C Thyrotropin receptor; s 99.5 3.5E-14 1.2E-18 147.8 10.7 56 627-682 32-89 (239)
92 4glp_A Monocyte differentiatio 99.5 2.2E-14 7.6E-19 155.7 6.9 229 566-847 62-303 (310)
93 2ca6_A RAN GTPase-activating p 99.5 2.4E-15 8E-20 169.1 -1.0 249 592-849 26-314 (386)
94 1h6u_A Internalin H; cell adhe 99.5 1.5E-13 5.2E-18 148.7 13.2 192 565-827 38-229 (308)
95 4glp_A Monocyte differentiatio 99.5 2.8E-13 9.6E-18 147.0 13.5 229 545-828 64-307 (310)
96 1p9a_G Platelet glycoprotein I 99.5 3.1E-13 1.1E-17 144.7 13.3 196 594-847 6-204 (290)
97 2o6q_A Variable lymphocyte rec 99.4 3.8E-13 1.3E-17 142.7 13.7 178 598-828 37-218 (270)
98 2ast_B S-phase kinase-associat 99.4 2.9E-15 9.9E-20 165.0 -3.2 227 597-877 46-282 (336)
99 4ay9_X Follicle-stimulating ho 99.4 8.8E-13 3E-17 145.7 15.4 245 622-906 6-255 (350)
100 1fnn_A CDC6P, cell division co 99.4 4.2E-11 1.5E-15 134.5 28.3 298 182-499 16-353 (389)
101 2v1u_A Cell division control p 99.4 2.7E-11 9.1E-16 136.1 26.4 296 182-498 18-352 (387)
102 1h6t_A Internalin B; cell adhe 99.4 7.3E-13 2.5E-17 142.0 12.7 81 595-684 43-123 (291)
103 2qby_B CDC6 homolog 3, cell di 99.4 3.7E-11 1.3E-15 134.7 26.5 297 182-499 19-341 (384)
104 2xwt_C Thyrotropin receptor; s 99.4 6.8E-13 2.3E-17 138.0 10.0 94 599-700 32-130 (239)
105 1m9s_A Internalin B; cell inva 99.4 1.2E-12 4.3E-17 153.9 13.3 172 594-828 39-210 (605)
106 3goz_A Leucine-rich repeat-con 99.4 2.6E-14 8.8E-19 158.9 -1.2 95 590-685 14-121 (362)
107 3m19_A Variable lymphocyte rec 99.3 7E-12 2.4E-16 131.3 15.0 97 599-703 15-113 (251)
108 2qby_A CDC6 homolog 1, cell di 99.3 5.8E-11 2E-15 133.2 20.9 296 181-498 18-349 (386)
109 3cvr_A Invasion plasmid antige 99.3 4.2E-12 1.4E-16 147.6 11.6 186 599-831 60-246 (571)
110 3goz_A Leucine-rich repeat-con 99.3 2.2E-13 7.6E-18 151.3 0.7 242 565-847 19-293 (362)
111 3m19_A Variable lymphocyte rec 99.3 1.7E-11 5.6E-16 128.5 13.8 172 626-847 14-188 (251)
112 4ezg_A Putative uncharacterize 99.3 4.6E-12 1.6E-16 127.2 9.1 124 565-703 41-165 (197)
113 1xeu_A Internalin C; cellular 99.3 2.6E-12 8.9E-17 135.3 7.4 80 596-684 17-96 (263)
114 4ezg_A Putative uncharacterize 99.3 1.5E-11 5E-16 123.5 12.0 149 544-708 43-192 (197)
115 1h6t_A Internalin B; cell adhe 99.3 1.4E-11 4.9E-16 131.8 11.5 150 594-769 64-213 (291)
116 4b8c_D Glucose-repressible alc 99.3 3.5E-12 1.2E-16 154.2 7.3 158 544-710 172-329 (727)
117 3cvr_A Invasion plasmid antige 99.3 2.2E-11 7.5E-16 141.6 13.6 67 627-703 60-126 (571)
118 1njg_A DNA polymerase III subu 99.2 1.6E-10 5.4E-15 120.6 18.4 198 183-396 23-231 (250)
119 2o6s_A Variable lymphocyte rec 99.2 1.7E-11 5.8E-16 124.3 9.5 80 598-683 28-110 (208)
120 1m9s_A Internalin B; cell inva 99.2 2.4E-11 8.2E-16 143.0 10.4 168 545-738 43-210 (605)
121 2o6s_A Variable lymphocyte rec 99.2 2.2E-11 7.5E-16 123.5 8.3 152 567-742 27-182 (208)
122 3e6j_A Variable lymphocyte rec 99.2 3E-11 1E-15 124.4 9.3 127 568-707 40-169 (229)
123 2v9t_B SLIT homolog 2 protein 99.2 2.8E-11 9.5E-16 123.7 8.7 127 568-706 32-161 (220)
124 2chg_A Replication factor C sm 99.2 6.9E-10 2.4E-14 113.8 18.4 184 183-392 17-203 (226)
125 1xeu_A Internalin C; cellular 99.2 9.3E-11 3.2E-15 123.4 11.4 102 594-707 37-138 (263)
126 2ell_A Acidic leucine-rich nuc 99.1 5.1E-11 1.8E-15 116.2 7.9 130 567-709 23-159 (168)
127 2v70_A SLIT-2, SLIT homolog 2 99.1 8.9E-11 3.1E-15 119.9 9.9 146 549-707 15-163 (220)
128 2je0_A Acidic leucine-rich nuc 99.1 3.2E-11 1.1E-15 115.0 4.5 125 567-704 16-147 (149)
129 3e6j_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 116.4 11.2 103 598-706 40-144 (229)
130 1a9n_A U2A', U2A'; complex (nu 99.1 9.8E-11 3.4E-15 115.1 6.8 128 564-706 15-149 (176)
131 2v9t_B SLIT homolog 2 protein 99.1 3.5E-10 1.2E-14 115.5 11.1 103 598-706 32-137 (220)
132 2ell_A Acidic leucine-rich nuc 99.1 8.4E-11 2.9E-15 114.6 6.0 134 544-691 23-164 (168)
133 4b8c_D Glucose-repressible alc 99.1 2.7E-11 9.1E-16 146.4 2.7 123 561-696 217-339 (727)
134 2v70_A SLIT-2, SLIT homolog 2 99.1 4.8E-10 1.6E-14 114.5 11.0 102 598-705 32-137 (220)
135 1sxj_B Activator 1 37 kDa subu 99.0 2.4E-09 8.3E-14 116.7 15.0 186 183-394 21-211 (323)
136 2je0_A Acidic leucine-rich nuc 99.0 1.4E-10 4.6E-15 110.6 4.0 126 544-682 16-149 (149)
137 2xot_A Amphoterin-induced prot 99.0 3.9E-10 1.3E-14 124.9 7.1 99 599-703 40-142 (361)
138 2xot_A Amphoterin-induced prot 99.0 3E-10 1E-14 125.8 6.0 126 569-707 40-173 (361)
139 1dce_A Protein (RAB geranylger 98.9 8.8E-10 3E-14 128.8 8.6 83 594-683 459-543 (567)
140 1dce_A Protein (RAB geranylger 98.9 7.1E-10 2.4E-14 129.6 7.5 101 599-707 442-543 (567)
141 1w8a_A SLIT protein; signaling 98.9 8E-10 2.7E-14 110.2 6.2 81 622-703 50-132 (192)
142 2wfh_A SLIT homolog 2 protein 98.9 3E-09 1E-13 105.9 10.1 100 598-704 31-133 (193)
143 1w8a_A SLIT protein; signaling 98.9 1.8E-09 6.1E-14 107.6 8.4 100 601-708 11-113 (192)
144 1a9n_A U2A', U2A'; complex (nu 98.9 7.4E-10 2.5E-14 108.7 5.2 127 544-684 18-151 (176)
145 1hqc_A RUVB; extended AAA-ATPa 98.9 4E-09 1.4E-13 114.9 11.2 267 183-496 12-324 (324)
146 1ds9_A Outer arm dynein; leuci 98.9 9.9E-12 3.4E-16 124.9 -9.1 83 593-683 43-125 (198)
147 1ds9_A Outer arm dynein; leuci 98.9 5.4E-11 1.9E-15 119.5 -4.8 129 560-703 40-180 (198)
148 2o6r_A Variable lymphocyte rec 98.8 5.2E-09 1.8E-13 102.8 8.5 105 568-684 28-135 (177)
149 2wfh_A SLIT homolog 2 protein 98.8 7.5E-09 2.6E-13 103.0 9.4 119 552-685 17-138 (193)
150 3sb4_A Hypothetical leucine ri 98.8 3E-08 1E-12 108.2 14.4 120 566-702 23-153 (329)
151 1iqp_A RFCS; clamp loader, ext 98.8 4.8E-08 1.6E-12 106.5 15.3 186 183-394 25-213 (327)
152 3g39_A Variable lymphocyte rec 98.7 2.2E-08 7.4E-13 97.4 8.8 63 620-683 48-112 (170)
153 2r9u_A Variable lymphocyte rec 98.7 2.6E-08 9E-13 97.2 8.9 81 598-684 33-116 (174)
154 3te6_A Regulatory protein SIR3 98.7 2.6E-07 9E-12 97.9 16.9 172 184-360 21-212 (318)
155 2r9u_A Variable lymphocyte rec 98.7 1.1E-08 3.6E-13 100.0 5.7 102 600-710 14-118 (174)
156 2o6r_A Variable lymphocyte rec 98.6 7.3E-08 2.5E-12 94.5 9.8 104 597-707 27-134 (177)
157 1jr3_A DNA polymerase III subu 98.6 3.8E-07 1.3E-11 101.3 15.8 195 183-393 16-221 (373)
158 2chq_A Replication factor C sm 98.6 3.2E-07 1.1E-11 99.5 14.6 180 183-391 17-202 (319)
159 3g39_A Variable lymphocyte rec 98.6 5.4E-08 1.8E-12 94.6 6.5 103 599-710 10-115 (170)
160 1jbk_A CLPB protein; beta barr 98.5 6.6E-07 2.3E-11 88.8 12.1 151 183-355 22-194 (195)
161 3bos_A Putative DNA replicatio 98.5 5.1E-07 1.7E-11 93.4 10.6 173 183-392 28-216 (242)
162 3pfi_A Holliday junction ATP-d 98.4 4.6E-06 1.6E-10 91.1 17.7 176 182-390 28-224 (338)
163 1sxj_D Activator 1 41 kDa subu 98.4 3.2E-06 1.1E-10 93.1 15.7 193 183-391 37-233 (353)
164 2ifg_A High affinity nerve gro 98.3 1E-06 3.5E-11 96.8 8.5 85 594-684 27-114 (347)
165 2z4s_A Chromosomal replication 98.3 5E-06 1.7E-10 93.7 13.5 159 210-389 130-302 (440)
166 4fdw_A Leucine rich hypothetic 98.2 5.1E-05 1.7E-09 84.4 20.6 109 808-931 264-380 (401)
167 3uk6_A RUVB-like 2; hexameric 98.2 2E-05 6.9E-10 87.1 17.0 196 183-390 44-300 (368)
168 3sb4_A Hypothetical leucine ri 98.2 2.5E-06 8.7E-11 92.7 9.0 295 545-904 25-328 (329)
169 3pvs_A Replication-associated 98.2 2.3E-05 7.8E-10 88.0 15.8 176 183-390 26-212 (447)
170 3un9_A NLR family member X1; l 98.1 5.1E-07 1.7E-11 99.6 2.0 111 568-684 101-222 (372)
171 2ifg_A High affinity nerve gro 98.1 2.9E-06 9.8E-11 93.1 8.0 101 602-709 12-115 (347)
172 1sxj_E Activator 1 40 kDa subu 98.1 1.4E-05 5E-10 87.7 13.5 196 183-392 14-236 (354)
173 3un9_A NLR family member X1; l 98.1 4E-07 1.4E-11 100.4 0.4 138 545-685 101-251 (372)
174 1sxj_A Activator 1 95 kDa subu 98.1 1.3E-05 4.6E-10 92.4 13.1 198 183-394 39-254 (516)
175 3h4m_A Proteasome-activating n 98.1 2.2E-05 7.6E-10 83.2 13.9 183 182-390 16-228 (285)
176 3syl_A Protein CBBX; photosynt 98.1 4.6E-05 1.6E-09 81.9 16.1 162 184-361 32-219 (309)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.1 6.9E-05 2.4E-09 78.2 17.0 187 183-392 6-221 (262)
178 4fdw_A Leucine rich hypothetic 98.1 1.7E-05 5.7E-10 88.3 12.7 217 594-847 132-354 (401)
179 1l8q_A Chromosomal replication 98.1 6.3E-05 2.1E-09 81.4 16.5 154 210-387 37-202 (324)
180 1a5t_A Delta prime, HOLB; zinc 98.1 8.9E-05 3.1E-09 80.3 17.7 171 189-393 8-205 (334)
181 3u61_B DNA polymerase accessor 98.0 1.9E-05 6.5E-10 85.5 11.9 173 183-388 26-211 (324)
182 2p65_A Hypothetical protein PF 98.0 8.6E-06 2.9E-10 80.1 8.1 45 183-233 22-66 (187)
183 2ra8_A Uncharacterized protein 98.0 2E-06 7E-11 93.9 2.9 39 789-827 277-319 (362)
184 1sxj_C Activator 1 40 kDa subu 98.0 7.8E-05 2.7E-09 81.2 15.5 175 183-389 25-208 (340)
185 1io0_A Tropomodulin; LRR prote 97.9 3.9E-06 1.3E-10 82.5 3.4 116 565-683 33-161 (185)
186 4fs7_A Uncharacterized protein 97.9 0.00026 8.8E-09 78.9 18.2 308 562-931 65-376 (394)
187 1d2n_A N-ethylmaleimide-sensit 97.9 0.00015 5.1E-09 76.2 15.3 170 184-384 34-228 (272)
188 2ra8_A Uncharacterized protein 97.9 3E-06 1E-10 92.6 1.8 115 564-685 135-264 (362)
189 3n70_A Transport activator; si 97.9 8.9E-06 3E-10 76.3 4.7 115 184-329 2-116 (145)
190 3eie_A Vacuolar protein sortin 97.9 0.00038 1.3E-08 74.9 18.0 186 182-394 17-229 (322)
191 2w58_A DNAI, primosome compone 97.9 2E-05 7E-10 78.7 7.3 101 211-329 55-159 (202)
192 1io0_A Tropomodulin; LRR prote 97.8 4E-06 1.4E-10 82.5 1.8 97 588-685 26-135 (185)
193 3e4g_A ATP synthase subunit S, 97.8 2.8E-06 9.6E-11 81.2 0.5 39 897-936 114-154 (176)
194 2qp9_X Vacuolar protein sortin 97.8 0.00052 1.8E-08 74.9 18.5 185 183-393 51-261 (355)
195 3ec2_A DNA replication protein 97.8 4.5E-05 1.5E-09 74.5 8.6 102 210-328 38-142 (180)
196 3d8b_A Fidgetin-like protein 1 97.8 0.00027 9.3E-09 77.3 15.4 187 183-394 84-296 (357)
197 4fs7_A Uncharacterized protein 97.8 0.00025 8.6E-09 79.0 15.4 315 546-926 72-393 (394)
198 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.0012 4.2E-08 70.7 20.2 190 182-394 11-224 (322)
199 3rw6_A Nuclear RNA export fact 97.8 2.8E-05 9.6E-10 80.3 6.5 82 595-679 167-257 (267)
200 3b9p_A CG5977-PA, isoform A; A 97.7 0.001 3.4E-08 70.8 18.9 184 183-393 21-233 (297)
201 2gno_A DNA polymerase III, gam 97.7 0.0002 7E-09 75.9 12.0 146 189-359 3-152 (305)
202 3co5_A Putative two-component 97.6 3.2E-05 1.1E-09 72.2 4.0 111 183-328 4-115 (143)
203 1in4_A RUVB, holliday junction 97.6 0.0049 1.7E-07 66.6 21.1 175 183-390 25-220 (334)
204 4fcw_A Chaperone protein CLPB; 97.6 0.00031 1.1E-08 75.3 11.6 136 184-328 18-169 (311)
205 2zan_A Vacuolar protein sortin 97.5 0.0027 9.2E-08 71.4 19.1 189 182-393 133-345 (444)
206 3pxg_A Negative regulator of g 97.5 0.00064 2.2E-08 77.2 14.1 145 183-359 180-338 (468)
207 1qvr_A CLPB protein; coiled co 97.5 0.00028 9.6E-09 86.7 11.8 154 183-358 170-344 (854)
208 2bjv_A PSP operon transcriptio 97.5 0.00021 7.2E-09 74.7 8.9 133 183-328 6-150 (265)
209 2kjq_A DNAA-related protein; s 97.5 8.6E-05 2.9E-09 69.7 5.2 86 211-328 37-124 (149)
210 3vfd_A Spastin; ATPase, microt 97.5 0.0022 7.5E-08 71.0 17.6 187 182-392 114-325 (389)
211 3e4g_A ATP synthase subunit S, 97.5 7E-05 2.4E-09 71.5 4.6 84 599-686 62-152 (176)
212 3cf0_A Transitional endoplasmi 97.5 0.0011 3.7E-08 70.6 14.2 180 183-387 15-222 (301)
213 3hu3_A Transitional endoplasmi 97.4 0.00075 2.6E-08 76.5 12.7 185 183-392 204-414 (489)
214 2c9o_A RUVB-like 1; hexameric 97.4 0.00086 3E-08 75.9 12.7 95 292-391 298-408 (456)
215 3rw6_A Nuclear RNA export fact 97.4 0.00013 4.3E-09 75.4 5.2 81 623-705 167-259 (267)
216 1ofh_A ATP-dependent HSL prote 97.3 0.0021 7.3E-08 68.6 14.8 153 183-357 15-213 (310)
217 1ojl_A Transcriptional regulat 97.3 0.00026 8.9E-09 75.4 7.3 133 183-329 2-147 (304)
218 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0013 4.3E-08 80.1 13.0 157 183-359 186-362 (758)
219 4gt6_A Cell surface protein; l 97.2 0.0093 3.2E-07 66.1 17.9 109 563-683 58-170 (394)
220 1lv7_A FTSH; alpha/beta domain 97.2 0.0046 1.6E-07 64.0 14.4 184 182-390 11-222 (257)
221 3pxi_A Negative regulator of g 97.1 0.00055 1.9E-08 83.1 8.2 156 183-359 491-675 (758)
222 4b4t_J 26S protease regulatory 97.0 0.012 4E-07 64.0 16.3 179 182-386 147-354 (405)
223 3pxi_A Negative regulator of g 97.0 0.004 1.4E-07 75.5 14.1 149 183-359 180-338 (758)
224 4b4t_K 26S protease regulatory 96.8 0.01 3.6E-07 65.3 14.2 54 180-233 169-229 (428)
225 4b4t_L 26S protease subunit RP 96.8 0.016 5.3E-07 64.0 15.5 179 182-386 180-387 (437)
226 2qgz_A Helicase loader, putati 96.7 0.0012 4.2E-08 70.1 5.5 102 210-328 152-257 (308)
227 2r62_A Cell division protease 96.7 0.00066 2.2E-08 71.0 3.2 157 183-359 11-196 (268)
228 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00075 2.6E-08 70.6 3.5 69 210-300 123-193 (331)
229 2ce7_A Cell division protein F 96.7 0.0077 2.6E-07 67.6 11.8 179 183-386 16-221 (476)
230 3m6a_A ATP-dependent protease 96.6 0.01 3.6E-07 68.4 12.9 162 183-359 81-266 (543)
231 4b4t_H 26S protease regulatory 96.6 0.039 1.3E-06 60.8 16.5 178 183-386 209-415 (467)
232 1r6b_X CLPA protein; AAA+, N-t 96.6 0.004 1.4E-07 75.6 9.8 135 183-328 458-607 (758)
233 2cvh_A DNA repair and recombin 96.6 0.0083 2.8E-07 60.3 10.7 85 210-300 20-116 (220)
234 1qvr_A CLPB protein; coiled co 96.6 0.0046 1.6E-07 75.9 10.3 135 184-328 559-710 (854)
235 2r44_A Uncharacterized protein 96.6 0.0033 1.1E-07 67.9 7.7 153 183-361 27-200 (331)
236 4gt6_A Cell surface protein; l 96.5 0.018 6E-07 63.9 13.4 111 561-683 80-192 (394)
237 2b8t_A Thymidine kinase; deoxy 96.4 0.0033 1.1E-07 62.8 5.6 114 209-330 11-127 (223)
238 3t15_A Ribulose bisphosphate c 96.4 0.02 6.9E-07 60.3 12.0 25 209-233 35-59 (293)
239 1jr3_D DNA polymerase III, del 96.4 0.057 2E-06 58.3 16.0 157 209-391 17-183 (343)
240 4b4t_M 26S protease regulatory 96.4 0.015 5.3E-07 64.0 11.4 178 182-385 180-386 (434)
241 4b4t_I 26S protease regulatory 96.3 0.047 1.6E-06 59.5 14.7 177 183-385 182-387 (437)
242 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.016 5.4E-07 58.8 9.0 114 211-329 24-168 (235)
243 3hr8_A Protein RECA; alpha and 96.0 0.016 5.3E-07 62.4 9.1 85 209-300 60-150 (356)
244 1um8_A ATP-dependent CLP prote 95.9 0.035 1.2E-06 60.9 11.7 23 210-232 72-94 (376)
245 1ye8_A Protein THEP1, hypothet 95.9 0.027 9.2E-07 54.2 9.2 22 212-233 2-23 (178)
246 1v5w_A DMC1, meiotic recombina 95.9 0.032 1.1E-06 60.1 10.9 57 209-266 121-181 (343)
247 1n0w_A DNA repair protein RAD5 95.8 0.019 6.6E-07 58.5 8.5 90 210-300 24-130 (243)
248 3cf2_A TER ATPase, transitiona 95.8 0.045 1.5E-06 65.2 12.5 179 183-386 204-407 (806)
249 1g5t_A COB(I)alamin adenosyltr 95.8 0.015 5.2E-07 56.2 6.9 118 211-330 29-164 (196)
250 2x8a_A Nuclear valosin-contain 95.8 0.074 2.5E-06 55.2 12.7 126 213-359 47-191 (274)
251 3io5_A Recombination and repai 95.8 0.037 1.3E-06 57.6 10.1 84 212-300 30-122 (333)
252 2i1q_A DNA repair and recombin 95.7 0.022 7.7E-07 60.9 8.6 58 209-267 97-168 (322)
253 1xp8_A RECA protein, recombina 95.7 0.033 1.1E-06 60.2 9.8 84 210-300 74-163 (366)
254 2z43_A DNA repair and recombin 95.6 0.03 1E-06 59.9 9.1 57 210-267 107-167 (324)
255 2dhr_A FTSH; AAA+ protein, hex 95.6 0.096 3.3E-06 59.1 13.5 176 182-386 30-236 (499)
256 4h09_A Hypothetical leucine ri 95.5 0.12 4.2E-06 56.6 13.9 13 594-606 65-77 (379)
257 1ypw_A Transitional endoplasmi 95.3 0.045 1.5E-06 66.2 10.4 157 183-359 204-385 (806)
258 1pgv_A TMD-1, tropomodulin TMD 95.3 0.015 5.1E-07 56.5 4.9 93 590-683 33-136 (197)
259 1iy2_A ATP-dependent metallopr 95.2 0.055 1.9E-06 56.5 9.7 52 181-233 38-96 (278)
260 2zr9_A Protein RECA, recombina 95.2 0.044 1.5E-06 59.0 8.9 85 209-300 60-150 (349)
261 1rz3_A Hypothetical protein rb 95.1 0.021 7.1E-07 56.4 5.6 42 188-232 3-44 (201)
262 1u94_A RECA protein, recombina 95.1 0.046 1.6E-06 59.0 8.5 83 210-299 63-151 (356)
263 1pgv_A TMD-1, tropomodulin TMD 95.0 0.0078 2.7E-07 58.5 2.1 117 565-683 38-167 (197)
264 3ice_A Transcription terminati 95.0 0.021 7.1E-07 61.0 5.4 98 193-299 162-271 (422)
265 2pze_A Cystic fibrosis transme 95.0 0.15 5.1E-06 51.3 11.7 22 211-232 35-56 (229)
266 2px0_A Flagellar biosynthesis 94.9 0.06 2.1E-06 56.5 8.8 87 209-298 104-191 (296)
267 1cr0_A DNA primase/helicase; R 94.9 0.07 2.4E-06 56.3 9.4 38 210-249 35-73 (296)
268 2cbz_A Multidrug resistance-as 94.8 0.085 2.9E-06 53.4 9.2 22 211-232 32-53 (237)
269 3bh0_A DNAB-like replicative h 94.8 0.083 2.8E-06 56.1 9.5 52 209-264 67-118 (315)
270 3tqc_A Pantothenate kinase; bi 94.7 0.084 2.9E-06 55.8 9.0 46 185-232 69-114 (321)
271 1pzn_A RAD51, DNA repair and r 94.6 0.099 3.4E-06 56.4 9.7 91 209-300 130-242 (349)
272 1mv5_A LMRA, multidrug resista 94.6 0.17 5.9E-06 51.3 11.0 23 210-232 28-50 (243)
273 1vma_A Cell division protein F 94.6 0.22 7.4E-06 52.4 11.9 107 190-299 82-196 (306)
274 3c8u_A Fructokinase; YP_612366 94.5 0.029 1E-06 55.7 4.8 38 191-232 7-44 (208)
275 3lda_A DNA repair protein RAD5 94.4 0.11 3.6E-06 57.0 9.3 57 210-267 178-238 (400)
276 4a74_A DNA repair and recombin 94.3 0.11 3.9E-06 52.2 9.0 46 209-254 24-73 (231)
277 1odf_A YGR205W, hypothetical 3 94.3 0.17 5.8E-06 52.9 10.4 81 208-288 29-117 (290)
278 4h09_A Hypothetical leucine ri 94.3 0.58 2E-05 51.0 15.4 120 545-683 46-168 (379)
279 1gvn_B Zeta; postsegregational 94.2 0.041 1.4E-06 57.6 5.3 41 191-232 15-55 (287)
280 3lw7_A Adenylate kinase relate 94.2 0.022 7.5E-07 54.7 3.0 20 211-230 2-21 (179)
281 1sky_E F1-ATPase, F1-ATP synth 94.2 0.15 5.3E-06 56.3 10.0 99 195-299 141-255 (473)
282 1zp6_A Hypothetical protein AT 94.1 0.027 9.4E-07 54.9 3.6 23 210-232 9-31 (191)
283 2orw_A Thymidine kinase; TMTK, 94.1 0.01 3.5E-07 57.6 0.4 108 211-329 4-113 (184)
284 1qhx_A CPT, protein (chloramph 94.0 0.024 8.4E-07 54.6 3.0 22 211-232 4-25 (178)
285 4a1f_A DNAB helicase, replicat 94.0 0.15 5E-06 54.3 9.2 52 210-265 46-97 (338)
286 3kb2_A SPBC2 prophage-derived 93.9 0.027 9.1E-07 53.9 3.0 22 211-232 2-23 (173)
287 1ly1_A Polynucleotide kinase; 93.9 0.028 9.7E-07 54.2 3.2 22 211-232 3-24 (181)
288 2pjz_A Hypothetical protein ST 93.8 0.22 7.7E-06 51.0 10.0 22 211-232 31-52 (263)
289 3tui_C Methionine import ATP-b 93.8 0.31 1.1E-05 52.2 11.3 57 279-335 171-230 (366)
290 3vaa_A Shikimate kinase, SK; s 93.8 0.027 9.1E-07 55.5 2.8 23 210-232 25-47 (199)
291 3dm5_A SRP54, signal recogniti 93.7 0.29 1E-05 53.9 11.2 25 209-233 99-123 (443)
292 2p5t_B PEZT; postsegregational 93.7 0.048 1.6E-06 56.0 4.7 42 190-232 13-54 (253)
293 2ck3_D ATP synthase subunit be 93.7 0.37 1.3E-05 53.1 11.7 99 194-298 142-262 (482)
294 2ga8_A Hypothetical 39.9 kDa p 93.6 0.058 2E-06 57.4 5.1 45 186-232 2-46 (359)
295 3kl4_A SRP54, signal recogniti 93.5 0.41 1.4E-05 52.7 12.0 25 209-233 96-120 (433)
296 3uie_A Adenylyl-sulfate kinase 93.5 0.042 1.4E-06 54.1 3.7 24 209-232 24-47 (200)
297 2rhm_A Putative kinase; P-loop 93.5 0.045 1.5E-06 53.4 3.8 24 209-232 4-27 (193)
298 1kag_A SKI, shikimate kinase I 93.4 0.03 1E-06 53.6 2.4 22 211-232 5-26 (173)
299 3trf_A Shikimate kinase, SK; a 93.4 0.032 1.1E-06 54.1 2.7 23 210-232 5-27 (185)
300 2ffh_A Protein (FFH); SRP54, s 93.4 0.26 8.8E-06 54.2 10.0 24 210-233 98-121 (425)
301 1kgd_A CASK, peripheral plasma 93.4 0.038 1.3E-06 53.3 3.1 23 210-232 5-27 (180)
302 2dr3_A UPF0273 protein PH0284; 93.4 0.27 9.1E-06 49.9 9.7 40 210-251 23-62 (247)
303 1nks_A Adenylate kinase; therm 93.4 0.041 1.4E-06 53.7 3.3 22 211-232 2-23 (194)
304 1knq_A Gluconate kinase; ALFA/ 93.4 0.049 1.7E-06 52.2 3.8 24 209-232 7-30 (175)
305 1z47_A CYSA, putative ABC-tran 93.3 0.33 1.1E-05 52.0 10.5 125 211-335 42-212 (355)
306 3nbx_X ATPase RAVA; AAA+ ATPas 93.3 0.05 1.7E-06 61.5 4.3 42 184-233 23-64 (500)
307 4gp7_A Metallophosphoesterase; 93.3 0.042 1.4E-06 52.6 3.2 23 210-232 9-31 (171)
308 3fwy_A Light-independent proto 93.2 0.044 1.5E-06 58.0 3.5 40 208-249 46-85 (314)
309 2bdt_A BH3686; alpha-beta prot 93.2 0.047 1.6E-06 53.1 3.4 22 211-232 3-24 (189)
310 2xxa_A Signal recognition part 93.1 0.55 1.9E-05 51.9 12.3 43 191-233 78-123 (433)
311 3rfe_A Platelet glycoprotein I 93.1 0.13 4.3E-06 46.5 5.9 52 602-660 12-66 (130)
312 4eun_A Thermoresistant glucoki 93.0 0.044 1.5E-06 54.0 2.9 24 209-232 28-51 (200)
313 3t61_A Gluconokinase; PSI-biol 93.0 0.038 1.3E-06 54.5 2.4 23 210-232 18-40 (202)
314 1kht_A Adenylate kinase; phosp 92.9 0.047 1.6E-06 53.2 3.0 22 211-232 4-25 (192)
315 1uf9_A TT1252 protein; P-loop, 92.9 0.058 2E-06 53.1 3.6 25 208-232 6-30 (203)
316 1ukz_A Uridylate kinase; trans 92.9 0.059 2E-06 53.1 3.7 25 208-232 13-37 (203)
317 3hws_A ATP-dependent CLP prote 92.9 0.066 2.3E-06 58.4 4.4 50 184-233 16-74 (363)
318 1fx0_B ATP synthase beta chain 92.8 0.27 9.2E-06 54.5 9.0 99 194-298 154-275 (498)
319 3tr0_A Guanylate kinase, GMP k 92.8 0.05 1.7E-06 53.7 3.1 22 211-232 8-29 (205)
320 2qt1_A Nicotinamide riboside k 92.8 0.063 2.2E-06 53.1 3.8 24 209-232 20-43 (207)
321 1j8m_F SRP54, signal recogniti 92.8 0.37 1.3E-05 50.5 9.8 88 210-299 98-190 (297)
322 2yhs_A FTSY, cell division pro 92.8 0.31 1.1E-05 54.2 9.6 42 209-253 292-333 (503)
323 2jaq_A Deoxyguanosine kinase; 92.8 0.05 1.7E-06 53.7 3.0 21 212-232 2-22 (205)
324 2ze6_A Isopentenyl transferase 92.8 0.054 1.8E-06 55.6 3.2 22 211-232 2-23 (253)
325 2it1_A 362AA long hypothetical 92.7 0.42 1.4E-05 51.4 10.3 125 211-335 30-200 (362)
326 3asz_A Uridine kinase; cytidin 92.7 0.062 2.1E-06 53.3 3.6 24 209-232 5-28 (211)
327 3iij_A Coilin-interacting nucl 92.7 0.044 1.5E-06 52.9 2.4 23 210-232 11-33 (180)
328 2yvu_A Probable adenylyl-sulfa 92.7 0.067 2.3E-06 51.9 3.7 25 209-233 12-36 (186)
329 1y63_A LMAJ004144AAA protein; 92.7 0.053 1.8E-06 52.5 3.0 24 209-232 9-32 (184)
330 1tev_A UMP-CMP kinase; ploop, 92.7 0.058 2E-06 52.7 3.3 23 210-232 3-25 (196)
331 1uj2_A Uridine-cytidine kinase 92.7 0.059 2E-06 55.3 3.4 25 208-232 20-44 (252)
332 2if2_A Dephospho-COA kinase; a 92.7 0.055 1.9E-06 53.4 3.1 21 212-232 3-23 (204)
333 3tau_A Guanylate kinase, GMP k 92.7 0.055 1.9E-06 53.7 3.1 23 210-232 8-30 (208)
334 1zuh_A Shikimate kinase; alpha 92.6 0.056 1.9E-06 51.4 3.0 24 209-232 6-29 (168)
335 3e70_C DPA, signal recognition 92.6 0.37 1.3E-05 51.1 9.6 25 209-233 128-152 (328)
336 1via_A Shikimate kinase; struc 92.6 0.047 1.6E-06 52.4 2.4 21 212-232 6-26 (175)
337 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.061 2.1E-06 55.4 3.4 23 210-232 4-26 (260)
338 2qor_A Guanylate kinase; phosp 92.6 0.046 1.6E-06 54.0 2.4 24 209-232 11-34 (204)
339 3umf_A Adenylate kinase; rossm 92.6 0.067 2.3E-06 53.1 3.5 25 208-232 27-51 (217)
340 3a00_A Guanylate kinase, GMP k 92.5 0.044 1.5E-06 53.2 2.2 22 211-232 2-23 (186)
341 1ixz_A ATP-dependent metallopr 92.5 0.097 3.3E-06 53.7 4.8 51 182-233 15-72 (254)
342 1jjv_A Dephospho-COA kinase; P 92.5 0.065 2.2E-06 53.0 3.4 22 211-232 3-24 (206)
343 2c95_A Adenylate kinase 1; tra 92.5 0.058 2E-06 52.8 3.0 23 210-232 9-31 (196)
344 2j37_W Signal recognition part 92.4 0.86 3E-05 51.3 12.8 26 208-233 99-124 (504)
345 2j41_A Guanylate kinase; GMP, 92.4 0.059 2E-06 53.3 3.0 23 210-232 6-28 (207)
346 1ex7_A Guanylate kinase; subst 92.4 0.036 1.2E-06 53.5 1.3 22 211-232 2-23 (186)
347 3l0o_A Transcription terminati 92.4 0.37 1.3E-05 51.5 9.0 56 191-252 161-217 (427)
348 3cm0_A Adenylate kinase; ATP-b 92.4 0.072 2.5E-06 51.6 3.5 23 210-232 4-26 (186)
349 2z0h_A DTMP kinase, thymidylat 92.3 0.19 6.4E-06 49.1 6.4 21 212-232 2-22 (197)
350 1cke_A CK, MSSA, protein (cyti 92.3 0.064 2.2E-06 54.0 3.0 22 211-232 6-27 (227)
351 1ls1_A Signal recognition part 92.2 0.53 1.8E-05 49.3 10.1 87 210-298 98-189 (295)
352 1qf9_A UMP/CMP kinase, protein 92.2 0.075 2.6E-06 51.8 3.4 23 210-232 6-28 (194)
353 1xjc_A MOBB protein homolog; s 92.2 0.065 2.2E-06 50.7 2.7 25 209-233 3-27 (169)
354 1htw_A HI0065; nucleotide-bind 92.1 0.09 3.1E-06 49.3 3.6 24 209-232 32-55 (158)
355 2iyv_A Shikimate kinase, SK; t 92.1 0.054 1.8E-06 52.4 2.2 21 212-232 4-24 (184)
356 2bbw_A Adenylate kinase 4, AK4 92.1 0.069 2.4E-06 54.5 3.1 23 210-232 27-49 (246)
357 2plr_A DTMP kinase, probable t 92.1 0.073 2.5E-06 52.8 3.2 23 211-233 5-27 (213)
358 4akg_A Glutathione S-transfera 92.1 1.8 6.3E-05 58.5 17.2 139 211-359 1268-1431(2695)
359 1lvg_A Guanylate kinase, GMP k 92.1 0.054 1.8E-06 53.2 2.2 22 211-232 5-26 (198)
360 2cdn_A Adenylate kinase; phosp 92.1 0.074 2.5E-06 52.3 3.2 24 209-232 19-42 (201)
361 2bwj_A Adenylate kinase 5; pho 92.1 0.072 2.4E-06 52.2 3.1 22 211-232 13-34 (199)
362 3upu_A ATP-dependent DNA helic 92.1 0.18 6E-06 56.9 6.7 22 212-233 47-68 (459)
363 2pt5_A Shikimate kinase, SK; a 92.0 0.074 2.5E-06 50.5 2.9 21 212-232 2-22 (168)
364 1zu4_A FTSY; GTPase, signal re 92.0 0.48 1.6E-05 50.1 9.5 25 209-233 104-128 (320)
365 2hf9_A Probable hydrogenase ni 92.0 0.11 3.6E-06 52.2 4.3 25 209-233 37-61 (226)
366 3aez_A Pantothenate kinase; tr 92.0 0.085 2.9E-06 55.8 3.6 24 209-232 89-112 (312)
367 3tlx_A Adenylate kinase 2; str 91.9 0.11 3.8E-06 52.9 4.3 24 209-232 28-51 (243)
368 1znw_A Guanylate kinase, GMP k 91.9 0.078 2.7E-06 52.5 3.1 23 210-232 20-42 (207)
369 1nn5_A Similar to deoxythymidy 91.9 0.2 6.9E-06 49.6 6.3 23 210-232 9-31 (215)
370 1e6c_A Shikimate kinase; phosp 91.9 0.065 2.2E-06 51.2 2.4 22 211-232 3-24 (173)
371 2vli_A Antibiotic resistance p 91.8 0.06 2E-06 52.0 2.1 23 210-232 5-27 (183)
372 1g8p_A Magnesium-chelatase 38 91.8 0.069 2.4E-06 57.8 2.8 45 183-233 24-68 (350)
373 2pbr_A DTMP kinase, thymidylat 91.8 0.08 2.7E-06 51.6 3.0 21 212-232 2-22 (195)
374 2pez_A Bifunctional 3'-phospho 91.7 0.093 3.2E-06 50.5 3.4 23 210-232 5-27 (179)
375 3ney_A 55 kDa erythrocyte memb 91.7 0.076 2.6E-06 51.7 2.7 24 209-232 18-41 (197)
376 2jeo_A Uridine-cytidine kinase 91.6 0.1 3.5E-06 53.2 3.6 24 209-232 24-47 (245)
377 2grj_A Dephospho-COA kinase; T 91.5 0.11 3.8E-06 50.5 3.7 25 208-232 10-34 (192)
378 2r6a_A DNAB helicase, replicat 91.5 0.47 1.6E-05 53.2 9.3 50 210-262 203-252 (454)
379 2f6r_A COA synthase, bifunctio 91.5 0.11 3.8E-06 54.1 3.8 23 209-231 74-96 (281)
380 1aky_A Adenylate kinase; ATP:A 91.4 0.084 2.9E-06 52.8 2.8 23 210-232 4-26 (220)
381 4e22_A Cytidylate kinase; P-lo 91.4 0.092 3.1E-06 53.8 3.1 23 210-232 27-49 (252)
382 3vr4_D V-type sodium ATPase su 91.4 0.22 7.5E-06 54.6 6.1 98 194-298 140-257 (465)
383 2q6t_A DNAB replication FORK h 91.3 0.73 2.5E-05 51.5 10.6 52 210-264 200-251 (444)
384 1rj9_A FTSY, signal recognitio 91.3 0.094 3.2E-06 55.2 3.1 24 209-232 101-124 (304)
385 2wwf_A Thymidilate kinase, put 91.3 0.099 3.4E-06 51.8 3.1 24 210-233 10-33 (212)
386 1zd8_A GTP:AMP phosphotransfer 91.3 0.098 3.3E-06 52.6 3.1 23 210-232 7-29 (227)
387 2r9v_A ATP synthase subunit al 91.3 0.4 1.4E-05 53.2 8.0 96 194-298 164-276 (515)
388 1z6g_A Guanylate kinase; struc 91.2 0.085 2.9E-06 52.7 2.6 23 210-232 23-45 (218)
389 2i3b_A HCR-ntpase, human cance 91.2 0.087 3E-06 51.1 2.5 22 212-233 3-24 (189)
390 2wsm_A Hydrogenase expression/ 91.2 0.12 4E-06 51.7 3.6 25 209-233 29-53 (221)
391 1m7g_A Adenylylsulfate kinase; 91.2 0.12 4E-06 51.4 3.5 24 209-232 24-47 (211)
392 3tif_A Uncharacterized ABC tra 91.2 0.15 5E-06 51.6 4.3 33 211-246 32-64 (235)
393 1sq5_A Pantothenate kinase; P- 91.1 0.22 7.4E-06 52.7 5.7 24 209-232 79-102 (308)
394 2qe7_A ATP synthase subunit al 91.0 0.41 1.4E-05 53.1 7.9 96 194-298 151-263 (502)
395 1zak_A Adenylate kinase; ATP:A 91.0 0.09 3.1E-06 52.7 2.5 23 210-232 5-27 (222)
396 3fb4_A Adenylate kinase; psych 91.0 0.11 3.7E-06 51.8 3.0 21 212-232 2-22 (216)
397 1s96_A Guanylate kinase, GMP k 90.9 0.11 3.6E-06 51.9 2.9 24 209-232 15-38 (219)
398 2pt7_A CAG-ALFA; ATPase, prote 90.9 0.33 1.1E-05 51.7 7.0 105 211-330 172-276 (330)
399 2ck3_A ATP synthase subunit al 90.9 0.56 1.9E-05 52.1 8.8 100 194-298 151-271 (510)
400 3gfo_A Cobalt import ATP-bindi 90.8 0.16 5.5E-06 52.5 4.2 22 211-232 35-56 (275)
401 2v54_A DTMP kinase, thymidylat 90.8 0.11 3.8E-06 51.1 3.0 22 211-232 5-26 (204)
402 3hjn_A DTMP kinase, thymidylat 90.8 0.45 1.5E-05 46.4 7.3 49 212-262 2-50 (197)
403 1tf7_A KAIC; homohexamer, hexa 90.8 0.18 6.1E-06 57.9 5.1 115 210-329 281-417 (525)
404 3gqb_B V-type ATP synthase bet 90.8 0.24 8.1E-06 54.3 5.7 100 194-298 136-260 (464)
405 1gtv_A TMK, thymidylate kinase 90.8 0.07 2.4E-06 53.0 1.5 21 212-232 2-22 (214)
406 2f1r_A Molybdopterin-guanine d 90.8 0.081 2.8E-06 50.3 1.8 23 211-233 3-25 (171)
407 2pcj_A ABC transporter, lipopr 90.8 0.12 4.1E-06 51.8 3.1 22 211-232 31-52 (224)
408 1q57_A DNA primase/helicase; d 90.7 0.81 2.8E-05 52.1 10.5 54 209-265 241-294 (503)
409 3b9q_A Chloroplast SRP recepto 90.7 0.13 4.6E-06 54.0 3.6 25 209-233 99-123 (302)
410 3be4_A Adenylate kinase; malar 90.7 0.1 3.5E-06 52.1 2.6 22 211-232 6-27 (217)
411 3dl0_A Adenylate kinase; phosp 90.7 0.12 4E-06 51.6 3.0 21 212-232 2-22 (216)
412 3jvv_A Twitching mobility prot 90.7 0.092 3.2E-06 56.6 2.4 111 211-333 124-235 (356)
413 1vht_A Dephospho-COA kinase; s 90.7 0.14 4.7E-06 51.1 3.5 23 210-232 4-26 (218)
414 2zts_A Putative uncharacterize 90.7 0.36 1.2E-05 49.0 6.9 49 210-261 30-78 (251)
415 3p32_A Probable GTPase RV1496/ 90.7 0.22 7.5E-06 53.9 5.4 37 192-232 65-101 (355)
416 1b0u_A Histidine permease; ABC 90.6 0.17 5.9E-06 52.0 4.2 23 210-232 32-54 (262)
417 2ehv_A Hypothetical protein PH 90.6 0.12 4.1E-06 52.7 3.1 39 210-249 30-68 (251)
418 3nwj_A ATSK2; P loop, shikimat 90.6 0.1 3.5E-06 53.1 2.4 22 211-232 49-70 (250)
419 2onk_A Molybdate/tungstate ABC 90.5 0.12 4E-06 52.4 2.8 22 211-232 25-46 (240)
420 2c61_A A-type ATP synthase non 90.5 0.26 8.8E-06 54.4 5.7 100 194-298 141-258 (469)
421 3rfe_A Platelet glycoprotein I 90.4 0.3 1E-05 44.0 5.2 54 629-685 11-67 (130)
422 2ged_A SR-beta, signal recogni 90.4 0.2 6.8E-06 48.6 4.3 26 208-233 46-71 (193)
423 4eaq_A DTMP kinase, thymidylat 90.4 0.29 1E-05 49.1 5.6 25 209-233 25-49 (229)
424 4g1u_C Hemin import ATP-bindin 90.3 0.2 6.7E-06 51.6 4.4 23 210-232 37-59 (266)
425 3b85_A Phosphate starvation-in 90.3 0.11 3.9E-06 51.2 2.5 23 211-233 23-45 (208)
426 1yrb_A ATP(GTP)binding protein 90.3 0.17 5.9E-06 52.0 4.0 26 207-232 11-36 (262)
427 3mfy_A V-type ATP synthase alp 90.2 0.78 2.7E-05 51.3 9.2 59 194-261 216-275 (588)
428 3cmu_A Protein RECA, recombina 90.2 0.46 1.6E-05 61.9 8.4 84 209-299 1426-1515(2050)
429 3sr0_A Adenylate kinase; phosp 90.1 0.14 4.9E-06 50.3 3.0 21 212-232 2-22 (206)
430 2ff7_A Alpha-hemolysin translo 90.1 0.21 7.1E-06 50.8 4.3 22 211-232 36-57 (247)
431 3ake_A Cytidylate kinase; CMP 90.1 0.14 4.9E-06 50.4 3.0 21 212-232 4-24 (208)
432 1vpl_A ABC transporter, ATP-bi 90.0 0.21 7.2E-06 51.0 4.2 22 211-232 42-63 (256)
433 3d3q_A TRNA delta(2)-isopenten 90.0 0.15 5.3E-06 54.0 3.3 22 211-232 8-29 (340)
434 1e4v_A Adenylate kinase; trans 90.0 0.15 5.2E-06 50.6 3.1 21 212-232 2-22 (214)
435 3lnc_A Guanylate kinase, GMP k 90.0 0.11 3.6E-06 52.5 2.0 21 211-231 28-48 (231)
436 3e1s_A Exodeoxyribonuclease V, 89.9 0.42 1.4E-05 55.2 7.2 104 211-327 205-314 (574)
437 2xb4_A Adenylate kinase; ATP-b 89.9 0.15 5.1E-06 51.1 3.0 21 212-232 2-22 (223)
438 1ji0_A ABC transporter; ATP bi 89.9 0.15 5.3E-06 51.6 3.1 22 211-232 33-54 (240)
439 3r20_A Cytidylate kinase; stru 89.9 0.15 5.3E-06 51.0 3.0 23 210-232 9-31 (233)
440 2ixe_A Antigen peptide transpo 89.8 0.22 7.6E-06 51.4 4.3 23 210-232 45-67 (271)
441 2olj_A Amino acid ABC transpor 89.8 0.16 5.3E-06 52.2 3.0 23 210-232 50-72 (263)
442 1sgw_A Putative ABC transporte 89.8 0.13 4.6E-06 50.9 2.5 22 211-232 36-57 (214)
443 1np6_A Molybdopterin-guanine d 89.8 0.15 5.1E-06 48.7 2.7 25 209-233 5-29 (174)
444 2og2_A Putative signal recogni 89.8 0.24 8.3E-06 53.2 4.7 25 209-233 156-180 (359)
445 1oix_A RAS-related protein RAB 89.7 0.2 6.7E-06 48.7 3.6 25 209-233 28-52 (191)
446 1g6h_A High-affinity branched- 89.7 0.16 5.5E-06 52.1 3.1 22 211-232 34-55 (257)
447 3vr4_A V-type sodium ATPase ca 89.6 0.79 2.7E-05 51.5 8.6 59 194-261 221-280 (600)
448 2wji_A Ferrous iron transport 89.6 0.21 7.2E-06 47.1 3.7 24 210-233 3-26 (165)
449 2d2e_A SUFC protein; ABC-ATPas 89.6 0.17 5.8E-06 51.6 3.1 22 211-232 30-51 (250)
450 3vkw_A Replicase large subunit 89.5 0.81 2.8E-05 50.2 8.6 26 207-232 158-183 (446)
451 2yz2_A Putative ABC transporte 89.5 0.24 8.2E-06 51.0 4.3 22 211-232 34-55 (266)
452 3oaa_A ATP synthase subunit al 89.5 1.4 4.7E-05 48.8 10.3 96 194-298 151-263 (513)
453 3b5x_A Lipid A export ATP-bind 89.5 1.1 3.8E-05 51.9 10.4 23 210-232 369-391 (582)
454 3crm_A TRNA delta(2)-isopenten 89.4 0.18 6.1E-06 53.1 3.2 23 210-232 5-27 (323)
455 2zu0_C Probable ATP-dependent 89.4 0.17 6E-06 52.1 3.1 22 211-232 47-68 (267)
456 2zej_A Dardarin, leucine-rich 89.4 0.17 5.7E-06 48.9 2.8 22 212-233 4-25 (184)
457 3a8t_A Adenylate isopentenyltr 89.4 0.19 6.6E-06 53.0 3.4 24 209-232 39-62 (339)
458 1ak2_A Adenylate kinase isoenz 89.3 0.18 6.1E-06 50.9 3.0 23 210-232 16-38 (233)
459 2qi9_C Vitamin B12 import ATP- 89.2 0.18 6.3E-06 51.2 3.0 22 211-232 27-48 (249)
460 2eyu_A Twitching motility prot 89.2 0.31 1E-05 50.0 4.7 23 210-232 25-47 (261)
461 1g41_A Heat shock protein HSLU 89.1 0.28 9.4E-06 54.2 4.6 50 183-232 15-72 (444)
462 2ghi_A Transport protein; mult 89.1 0.19 6.5E-06 51.6 3.1 22 211-232 47-68 (260)
463 1ltq_A Polynucleotide kinase; 89.1 0.19 6.6E-06 53.0 3.2 22 211-232 3-24 (301)
464 3cmu_A Protein RECA, recombina 89.0 0.74 2.5E-05 60.0 9.0 85 209-300 382-472 (2050)
465 2nq2_C Hypothetical ABC transp 89.0 0.19 6.6E-06 51.3 3.0 22 211-232 32-53 (253)
466 2ihy_A ABC transporter, ATP-bi 89.0 0.19 6.5E-06 52.1 3.0 22 211-232 48-69 (279)
467 4edh_A DTMP kinase, thymidylat 88.9 0.66 2.3E-05 45.8 6.8 24 210-233 6-29 (213)
468 3zvl_A Bifunctional polynucleo 88.8 0.19 6.7E-06 55.6 3.1 25 208-232 256-280 (416)
469 2vp4_A Deoxynucleoside kinase; 88.8 0.21 7.2E-06 50.2 3.2 24 209-232 19-42 (230)
470 2v3c_C SRP54, signal recogniti 88.8 0.25 8.5E-06 54.7 4.0 25 209-233 98-122 (432)
471 3exa_A TRNA delta(2)-isopenten 88.7 0.22 7.5E-06 51.9 3.2 23 210-232 3-25 (322)
472 2dyk_A GTP-binding protein; GT 88.7 0.24 8.3E-06 46.2 3.3 23 211-233 2-24 (161)
473 2f9l_A RAB11B, member RAS onco 88.6 0.21 7.2E-06 48.8 3.0 24 210-233 5-28 (199)
474 2r8r_A Sensor protein; KDPD, P 88.6 0.62 2.1E-05 46.0 6.2 106 210-329 6-127 (228)
475 1fx0_A ATP synthase alpha chai 88.5 0.54 1.8E-05 52.2 6.3 84 211-298 164-264 (507)
476 3llm_A ATP-dependent RNA helic 88.4 1.5 5.2E-05 44.0 9.3 101 191-300 65-187 (235)
477 3foz_A TRNA delta(2)-isopenten 88.4 0.27 9.3E-06 51.1 3.6 24 209-232 9-32 (316)
478 3bgw_A DNAB-like replicative h 88.3 1.6 5.4E-05 48.6 10.1 52 209-264 196-247 (444)
479 2fz4_A DNA repair protein RAD2 88.3 1.3 4.4E-05 44.6 8.7 104 213-327 111-227 (237)
480 2wjg_A FEOB, ferrous iron tran 88.2 0.29 9.9E-06 47.2 3.7 25 209-233 6-30 (188)
481 1tue_A Replication protein E1; 88.1 0.18 6.2E-06 48.9 2.0 23 211-233 59-81 (212)
482 3sop_A Neuronal-specific septi 88.1 0.25 8.6E-06 51.0 3.2 21 212-232 4-24 (270)
483 2v9p_A Replication protein E1; 88.1 0.24 8.3E-06 51.8 3.1 23 210-232 126-148 (305)
484 1q3t_A Cytidylate kinase; nucl 88.1 0.23 8E-06 50.2 2.9 25 208-232 14-38 (236)
485 3ld9_A DTMP kinase, thymidylat 88.1 0.72 2.5E-05 45.7 6.4 25 209-233 20-44 (223)
486 3end_A Light-independent proto 88.0 0.45 1.5E-05 50.2 5.3 41 208-250 39-79 (307)
487 3cmw_A Protein RECA, recombina 87.9 0.83 2.8E-05 58.8 8.3 86 209-301 731-822 (1706)
488 1nlf_A Regulatory protein REPA 87.9 0.26 8.9E-06 51.3 3.2 23 210-232 30-52 (279)
489 1a7j_A Phosphoribulokinase; tr 87.9 0.14 4.9E-06 53.5 1.2 24 209-232 4-27 (290)
490 2ce2_X GTPase HRAS; signaling 87.8 0.26 8.8E-06 46.1 2.9 22 212-233 5-26 (166)
491 3cmw_A Protein RECA, recombina 87.8 0.86 2.9E-05 58.6 8.3 85 209-300 382-472 (1706)
492 2ocp_A DGK, deoxyguanosine kin 87.7 0.3 1E-05 49.5 3.5 23 210-232 2-24 (241)
493 3lv8_A DTMP kinase, thymidylat 87.6 0.82 2.8E-05 45.9 6.6 37 210-247 27-63 (236)
494 2gj8_A MNME, tRNA modification 87.6 0.28 9.6E-06 46.6 3.0 23 211-233 5-27 (172)
495 1z2a_A RAS-related protein RAB 87.6 0.33 1.1E-05 45.6 3.5 25 209-233 4-28 (168)
496 1nij_A Hypothetical protein YJ 87.5 0.29 9.8E-06 52.0 3.3 24 209-232 3-26 (318)
497 3nh6_A ATP-binding cassette SU 87.3 0.23 8E-06 52.1 2.4 23 210-232 80-102 (306)
498 2bbs_A Cystic fibrosis transme 87.3 0.29 1E-05 50.9 3.2 23 210-232 64-86 (290)
499 3v9p_A DTMP kinase, thymidylat 87.3 0.64 2.2E-05 46.4 5.5 24 210-233 25-48 (227)
500 3q72_A GTP-binding protein RAD 87.2 0.29 9.8E-06 46.0 2.8 22 212-233 4-25 (166)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-48 Score=459.36 Aligned_cols=316 Identities=21% Similarity=0.275 Sum_probs=258.6
Q ss_pred ecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc--chhhhccCceEEEEEeCccc--cHHHHHHHH
Q 002071 186 CGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN--NDEVNRKFDKILWVCVSEAF--EEFRIARAI 261 (973)
Q Consensus 186 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i 261 (973)
|||+.++++|.++|.... ++..++|+|+||||+||||||++||+ +.+++.+|+.++||++++.+ +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999996542 34689999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHhcCCCC-------CCCcHHHHHHHHHHHhcCC-cEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 262 VEALDVSSS-------GLGEFQSLLKTISKSITGK-RFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 262 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
+++++.... +..+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 2234567789999999996 9999999999864322321 27999999999999998
Q ss_pred HhCC-CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCCCCHHHHHHHHhhh
Q 002071 334 MMGS-TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKKTEEEWQRILSSE 412 (973)
Q Consensus 334 ~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~ 412 (973)
.++. ..+|++++|+++|||+||.+++|.... ++.+.+++.+|+++|+|+||||+++|+.|+.+ + .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 8763 468999999999999999999886532 46788999999999999999999999999876 3 2333334333
Q ss_pred hhhhhhhcccchhhhhhhccCCchHHHHHHh-----------hhcCcCCCceeCHHHHHHHHHHc--CCCCCCC-CCcHH
Q 002071 413 LWKIEEIEKGVLTPLWLSYNDLPSRVKRCFS-----------YCAVFPKDFNIEKERLITLWMAQ--GYLGVEQ-DEETN 478 (973)
Q Consensus 413 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~wia~--g~i~~~~-~~~~~ 478 (973)
.+.. ...++.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.... +.+.+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3332 2456899999999999999999999 999999999999 8999999 9998776 66788
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCeeEEEEcchHHHHHHHHhcccce
Q 002071 479 IIGEEYFNILATRSFFQEFKKDDDNRIIECKMHDIVHDFAQFVSQNECL 527 (973)
Q Consensus 479 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~d~a~~~~~~e~~ 527 (973)
++++ ||++|+++||++....+ ...+|+|||+||+||+.++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999987543 345799999999999999887765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.5e-39 Score=379.11 Aligned_cols=285 Identities=21% Similarity=0.234 Sum_probs=228.5
Q ss_pred eecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCce-EEEEEeCccccHHHHHHHHHH
Q 002071 185 ICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDK-ILWVCVSEAFEEFRIARAIVE 263 (973)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~ 263 (973)
.|||+.++++|.++|.... +.++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999997432 4789999999999999999999998788999986 999999999998888888887
Q ss_pred HhcCCC------CC-----CCcHHHHHHHHHHHh---cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh
Q 002071 264 ALDVSS------SG-----LGEFQSLLKTISKSI---TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 264 ~l~~~~------~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~ 329 (973)
.++... .+ ..+.+++...+++.| .+||+||||||||+. ..|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 643211 11 013455666777765 689999999999983 345443 2 789999999999
Q ss_pred HHHHHhCCCCeeeCC------CCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCCC-CH
Q 002071 330 SVAFMMGSTDIIPVQ------ELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKK-TE 402 (973)
Q Consensus 330 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~-~~ 402 (973)
.++..+.....+.++ +|+.+|||+||.+.. +... .++..+| |+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 998765544466677 999999999999984 3221 1222333 9999999999999999875 67
Q ss_pred HHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHH-HHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCCCCCcHHHHH
Q 002071 403 EEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRV-KRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVEQDEETNIIG 481 (973)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~ 481 (973)
++|... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.+
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 888753 12458899999999999999 99999999999999999999999999887 1358
Q ss_pred HHHHHHHHhcccccccccCCCCCeeEEEEcchHHHHHH
Q 002071 482 EEYFNILATRSFFQEFKKDDDNRIIECKMHDIVHDFAQ 519 (973)
Q Consensus 482 ~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~d~a~ 519 (973)
+.++++|+++||++.. +....|+|||++++++.
T Consensus 405 e~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 8899999999999973 12246899999998653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-36 Score=395.90 Aligned_cols=312 Identities=21% Similarity=0.289 Sum_probs=248.6
Q ss_pred cCCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh-hccC-ceEEEEEeCccc--cHH
Q 002071 180 IDEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV-NRKF-DKILWVCVSEAF--EEF 255 (973)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~--~~~ 255 (973)
.....||||++++++|.++|.... ++.++|+|+||||+||||||+++|++.+. ..+| +.++||++++.. +..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 36899999999999999999999997543 4555 788899999854 344
Q ss_pred HHHHHHHHHhcCCC----CCCCcHHHHHHHHHHHhcCC--cEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh
Q 002071 256 RIARAIVEALDVSS----SGLGEFQSLLKTISKSITGK--RFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 256 ~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~ 329 (973)
..++.++..+.... ....+.+++.+.++..+.++ |+||||||||+.. .|. ...+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~-------~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLK-------AFDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHT-------TTCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHH-------hhcCCCEEEEEcCCH
Confidence 55777887776543 22356788889999999877 9999999999752 232 236789999999999
Q ss_pred HHHHH-hCCCCeeeCCC-CCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCCCCHHHHHH
Q 002071 330 SVAFM-MGSTDIIPVQE-LAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKKTEEEWQR 407 (973)
Q Consensus 330 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~ 407 (973)
.++.. ++....+.+.+ |+++|+|+||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 45667899996 999999999999885432 23456689999999999999999999998765 35666
Q ss_pred HHhhhhhhh----h----hhcccchhhhhhhccCCchHHHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCCCCCcHHH
Q 002071 408 ILSSELWKI----E----EIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVEQDEETNI 479 (973)
Q Consensus 408 ~~~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~ 479 (973)
.+....... . .....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~ 409 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TE 409 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HH
Confidence 554332211 1 1113588899999999999999999999999999999999999999654 46
Q ss_pred HHHHHHHHHHhcccccccccCCCCCeeEEEEcchHHHHHHHHhccc
Q 002071 480 IGEEYFNILATRSFFQEFKKDDDNRIIECKMHDIVHDFAQFVSQNE 525 (973)
Q Consensus 480 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~d~a~~~~~~e 525 (973)
.++.++++|+++||++... ++...+|+||+++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 7899999999999998654 344457999999999999987665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.5e-34 Score=338.76 Aligned_cols=305 Identities=21% Similarity=0.276 Sum_probs=232.4
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhh-hccC-ceEEEEEeCccccHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEV-NRKF-DKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~ 259 (973)
++.||||+.++++|.++|.... ++.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4569999999999999997532 35789999999999999999999997666 7889 58999999865 3333333
Q ss_pred H---HHHHhcCC----CCCCCcHHHHHHHHHHHhcC--CcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH
Q 002071 260 A---IVEALDVS----SSGLGEFQSLLKTISKSITG--KRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES 330 (973)
Q Consensus 260 ~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~ 330 (973)
. ++..++.. .....+.+.+...+...+.+ +++||||||+|+.. .+. ...+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----~l~----~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----VLK----AFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----HHH----TTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----HHH----HhcCCCeEEEECCCcH
Confidence 3 34455421 12334667778888888865 79999999998632 222 2257899999999998
Q ss_pred HHHHhCCCCeeeC---CCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcCCCCHHHHHH
Q 002071 331 VAFMMGSTDIIPV---QELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRSKKTEEEWQR 407 (973)
Q Consensus 331 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~ 407 (973)
++..+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||..+|+.++.+. ..|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 876543 233443 69999999999999886421 12245678999999999999999999998764 35776
Q ss_pred HHhhhhhhh----h----hhcccchhhhhhhccCCchHHHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCCCCCcHHH
Q 002071 408 ILSSELWKI----E----EIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVEQDEETNI 479 (973)
Q Consensus 408 ~~~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~ 479 (973)
++....... . .....+..++.+||+.||++.|.||++||+||+|+.|+.+.+...|.++ .+
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~ 409 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TE 409 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HH
Confidence 655432111 0 1123577899999999999999999999999999999999999999543 24
Q ss_pred HHHHHHHHHHhcccccccccCCCCCeeEEEEcchHHHHHHHHh
Q 002071 480 IGEEYFNILATRSFFQEFKKDDDNRIIECKMHDIVHDFAQFVS 522 (973)
Q Consensus 480 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~d~a~~~~ 522 (973)
.+..++++|+++||++... ++....|+||++++++++...
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 5788999999999998543 234457999999999998874
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.4e-24 Score=260.76 Aligned_cols=277 Identities=13% Similarity=0.079 Sum_probs=131.6
Q ss_pred CCcEEEecCCCccccch--hhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccc-cccCC
Q 002071 627 HLRYLNLSHQSIEKLPE--TLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTS-LRTLV 703 (973)
Q Consensus 627 ~L~~L~Ls~~~i~~Lp~--~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~ 703 (973)
+|++|+|++|.+..+|. .++++++|++|+|++|. +..+| .++.+++|++|++++|... .+|..++.+++ |+.|+
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence 55555555555555554 55555555555555554 33455 4555555555555555332 44544555555 55554
Q ss_pred eeeeCCCCCCCCCCccCccccc--CCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHH
Q 002071 704 EFHVSGGGGVGGSNACRLESLK--NLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQ 781 (973)
Q Consensus 704 ~~~~~~~~~~~~~~~~~l~~l~--~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 781 (973)
+..+.... ++..+..+. +|+.|++.++...+.++.... ........+|+.|+|++|..... ..
T Consensus 626 Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~--~l~~~~~~~L~~L~Ls~N~L~~l--------p~ 690 (876)
T 4ecn_A 626 FSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC--SMDDYKGINASTVTLSYNEIQKF--------PT 690 (876)
T ss_dssp CCSSCCCS-----CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS--CTTTCCCCCEEEEECCSSCCCSC--------CH
T ss_pred CcCCCCCc-----CchhhhccccCCCCEEECcCCcCCCccccchh--hhccccCCCcCEEEccCCcCCcc--------CH
Confidence 44333221 122222222 244444444433322221000 00001223555666655544211 00
Q ss_pred HHHhhcCCCCCccEEEEeeecCCCCCCCcccc--------ccCccEEEEecCCCCCcCCC-CC--CcCcccceecccccc
Q 002071 782 QLLEALQPPLNLKELLIGLYRGNTVFPGWMMP--------LTNLRSLTLEKCEKCKQIPP-LG--KLSSLEKLMIWGLKS 850 (973)
Q Consensus 782 ~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~--------l~~L~~L~L~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~ 850 (973)
..+..+++|+.|+|++|.+.. +|.++.. +++|+.|+|++|.+. .+|. ++ .+++|+.|+|+++.
T Consensus 691 ---~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~- 764 (876)
T 4ecn_A 691 ---ELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC- 764 (876)
T ss_dssp ---HHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-
T ss_pred ---HHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-
Confidence 112245567777777666664 6655432 226777777776554 4444 43 66777777776632
Q ss_pred ceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEcc
Q 002071 851 VKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILG 930 (973)
Q Consensus 851 l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~ 930 (973)
+..++.. ...+++|+.|.+.+++.+..-............+++|+.|+|++|. +..+|..+. ++|+.|+|++
T Consensus 765 L~~lp~~-----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~ 836 (876)
T 4ecn_A 765 FSSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIAD 836 (876)
T ss_dssp CSSCCCG-----GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCS
T ss_pred CCccchh-----hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCC
Confidence 2212111 1246667777665533111000000001123356777777777774 467776544 5777777777
Q ss_pred CCCcc
Q 002071 931 CAIPG 935 (973)
Q Consensus 931 c~~l~ 935 (973)
|+...
T Consensus 837 N~l~~ 841 (876)
T 4ecn_A 837 NPNIS 841 (876)
T ss_dssp CTTCE
T ss_pred CCCCc
Confidence 76543
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.2e-24 Score=267.23 Aligned_cols=272 Identities=22% Similarity=0.245 Sum_probs=168.1
Q ss_pred cceEEEEEEccCCC-CCCccccC-CCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc-
Q 002071 545 EKVCHLMLSIHEGA-PFPISTCR-IKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN- 621 (973)
Q Consensus 545 ~~~r~lsl~~~~~~-~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~- 621 (973)
..++++.+..+... .++..+.. +++|+.|.+.++.+. ...+..|..++.|++|++++|.+++ .+|..
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~------~~~p~~~~~l~~L~~L~L~~n~l~~----~ip~~~ 338 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY------GAVPPFFGSCSLLESLALSSNNFSG----ELPMDT 338 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE------ECCCGGGGGCTTCCEEECCSSEEEE----ECCHHH
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC------CccchHHhcCCCccEEECCCCcccC----cCCHHH
Confidence 45666666655443 23444443 377777777776542 1123336677777777777744331 45544
Q ss_pred ccCCCCCcEEEecCCCcc-ccchhhhccc-cccEEecCCCCCCcccCccccC--CCCcceeecCCCCCCCcccccCCCcc
Q 002071 622 VKRLVHLRYLNLSHQSIE-KLPETLCELY-NLQKLDVSDCYGLKELPQGIGK--LVNMKHLLDDKTDSLGHMPVGIGRLT 697 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~-~Lp~~i~~L~-~Lq~L~L~~~~~~~~lp~~i~~--L~~L~~L~l~~~~~~~~~p~~i~~l~ 697 (973)
++++++|++|++++|.+. .+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.....+|..++.++
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 677777777777777766 6677777776 7777777777644455665555 66777777777765556666677777
Q ss_pred ccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCc
Q 002071 698 SLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKE 777 (973)
Q Consensus 698 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 777 (973)
+|+.|++..+... +..+..+..+++|+.|++.++...+.++. .+..+++|+.|+++.|.....
T Consensus 419 ~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~------ 481 (768)
T 3rgz_A 419 ELVSLHLSFNYLS----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-------ELMYVKTLETLILDFNDLTGE------ 481 (768)
T ss_dssp TCCEEECCSSEEE----SCCCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCCSC------
T ss_pred CCCEEECcCCccc----CcccHHHhcCCCCCEEECCCCcccCcCCH-------HHcCCCCceEEEecCCcccCc------
Confidence 7777765544322 12345566666666666666655444443 345566777777776654321
Q ss_pred chHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceecccc
Q 002071 778 EDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGL 848 (973)
Q Consensus 778 ~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 848 (973)
.+..+..+++|+.|+|++|.+.+.+|.|+..+++|+.|+|++|.+...+|. ++.+++|+.|+|+++
T Consensus 482 -----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 482 -----IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp -----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred -----CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 123455566777777777776655677777777777777777766655554 666777777777654
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=6.8e-24 Score=258.13 Aligned_cols=325 Identities=14% Similarity=0.150 Sum_probs=222.6
Q ss_pred hhcccccEEEecccccccccccccCccccCCCCCcEEEecCCC-ccc--cchhhhccc-------cccEEecCCCCCCcc
Q 002071 595 EELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQS-IEK--LPETLCELY-------NLQKLDVSDCYGLKE 664 (973)
Q Consensus 595 ~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~-i~~--Lp~~i~~L~-------~Lq~L~L~~~~~~~~ 664 (973)
..+++|++|+|++|.+. ..+|..++++++|++|+|++|. ++. +|..++++. +|++|+|++|. +..
T Consensus 488 ~~L~~L~~L~Ls~N~l~----~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ 562 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNM----TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEE 562 (876)
T ss_dssp GGCTTCCEEEEESCTTC----CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCB
T ss_pred ccCCCCCEEECcCCCCC----ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCc
Confidence 38888999999886543 3578888899999999999987 774 888888777 89999999987 668
Q ss_pred cCc--cccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccC-CCccCceeeeccCCC
Q 002071 665 LPQ--GIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKN-LELLHVCGIRRLGNV 741 (973)
Q Consensus 665 lp~--~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~~~~~~~l~~~ 741 (973)
+|. .+.++++|++|++++|... .+| .++.+++|+.|++..+... .++..+..+++ |+.|++.++... .+
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcCCCCC-cC
Confidence 888 8889999999999888654 777 7888888888887665544 24556777887 888888777643 44
Q ss_pred CChhhhhhhhccCC--CCCCcEEEEecCCCCCCCCCCcchHHHHHhhcC--CCCCccEEEEeeecCCCCCCCccc-cccC
Q 002071 742 TDVGEAKRLELDKM--KYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQ--PPLNLKELLIGLYRGNTVFPGWMM-PLTN 816 (973)
Q Consensus 742 ~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~L~~L~L~~~~~~~~lp~~~~-~l~~ 816 (973)
|. .+... ++|+.|++++|......+ .+...+. ..++|+.|++++|.+.. +|.++. .+++
T Consensus 635 p~-------~~~~~~~~~L~~L~Ls~N~l~g~ip--------~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~ 698 (876)
T 4ecn_A 635 PN-------IFNAKSVYVMGSVDFSYNKIGSEGR--------NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSP 698 (876)
T ss_dssp CS-------CCCTTCSSCEEEEECCSSCTTTTSS--------SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCC
T ss_pred ch-------hhhccccCCCCEEECcCCcCCCccc--------cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCC
Confidence 43 23333 348888888886543210 0001111 33588999999988886 887765 7889
Q ss_pred ccEEEEecCCCCCcCCC-C--------CCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccc
Q 002071 817 LRSLTLEKCEKCKQIPP-L--------GKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGI 887 (973)
Q Consensus 817 L~~L~L~~~~~~~~l~~-l--------~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 887 (973)
|+.|+|++|.+. .+|. + ++|++|+.|+|+++ .+..++..+. ...+++|+.|++.++ .+..++.
T Consensus 699 L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~---~~~l~~L~~L~Ls~N-~L~~lp~-- 770 (876)
T 4ecn_A 699 ISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR---ATTLPYLSNMDVSYN-CFSSFPT-- 770 (876)
T ss_dssp CSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS---TTTCTTCCEEECCSS-CCSSCCC--
T ss_pred CCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCccchHHhh---hccCCCcCEEEeCCC-CCCccch--
Confidence 999999988765 4554 2 23458999999875 3443332221 025788899988876 3443332
Q ss_pred cCCCccCcccccceeeecc------CccCCCCCCCCCCCCCcceEEEccCCCccccccCccc---cc-cccccceeeecC
Q 002071 888 TGMGSTSIMPCLSYLAIIS------CPKLKALPDHFHQMTTLKELYILGCAIPGVRFRNGKQ---ED-LISQRANVYSRE 957 (973)
Q Consensus 888 ~~~~~~~~~p~L~~L~i~~------c~~l~~lp~~l~~l~~L~~L~i~~c~~l~~~~~~~~~---~~-~i~~~p~i~~~~ 957 (973)
....+++|+.|+|++ |.....+|..+.++++|+.|++++|.. ..+..... +. .+++.|-..+..
T Consensus 771 ----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L--~~Ip~~l~~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 771 ----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI--RKVDEKLTPQLYILDIADNPNISIDV 844 (876)
T ss_dssp ----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC--CBCCSCCCSSSCEEECCSCTTCEEEC
T ss_pred ----hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC--CccCHhhcCCCCEEECCCCCCCccCh
Confidence 334688899999876 433457788888889999999999876 22221111 11 556666555544
Q ss_pred CCchH
Q 002071 958 YDLPQ 962 (973)
Q Consensus 958 ~~~~~ 962 (973)
..+..
T Consensus 845 ~~~~~ 849 (876)
T 4ecn_A 845 TSVCP 849 (876)
T ss_dssp GGGHH
T ss_pred HHccc
Confidence 44433
No 8
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.6e-23 Score=246.23 Aligned_cols=61 Identities=18% Similarity=0.020 Sum_probs=43.6
Q ss_pred CCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCC--cCCC-CCCcCcccceecccc
Q 002071 788 QPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCK--QIPP-LGKLSSLEKLMIWGL 848 (973)
Q Consensus 788 ~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~~-l~~l~~L~~L~L~~~ 848 (973)
..+++|++|++++|.+.+..|.++..+++|+.|+|++|.+.. .+|. ++.+++|++|+|+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 456778888888887776567777778888888888877654 3333 667777777777764
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=2.5e-24 Score=264.34 Aligned_cols=345 Identities=18% Similarity=0.148 Sum_probs=251.1
Q ss_pred cceEEEEEEccCCC-CCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcccc
Q 002071 545 EKVCHLMLSIHEGA-PFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVK 623 (973)
Q Consensus 545 ~~~r~lsl~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~ 623 (973)
..++++.+..+... ..+..+..+++|++|.+.++.+. +.++...+..++.|++|++++|.+++ .+|..+.
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-----~~ip~~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~ 364 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS-----GELPMDTLLKMRGLKVLDLSFNEFSG----ELPESLT 364 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE-----EECCHHHHTTCTTCCEEECCSSEEEE----CCCTTHH
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc-----CcCCHHHHhcCCCCCEEeCcCCccCc----cccHHHH
Confidence 56788888777654 35677889999999999988641 24455668899999999999965542 5788888
Q ss_pred CCC-CCcEEEecCCCcc-ccchhhhc--cccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCcccc
Q 002071 624 RLV-HLRYLNLSHQSIE-KLPETLCE--LYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSL 699 (973)
Q Consensus 624 ~L~-~L~~L~Ls~~~i~-~Lp~~i~~--L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 699 (973)
++. +|++|++++|.+. .+|..++. +.+|++|++++|.....+|..+..+++|++|++++|.....+|..++.+++|
T Consensus 365 ~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 444 (768)
T 3rgz_A 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444 (768)
T ss_dssp HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCC
Confidence 887 9999999999977 67777777 8899999999998555789899999999999999997777888889999999
Q ss_pred ccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcch
Q 002071 700 RTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEED 779 (973)
Q Consensus 700 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 779 (973)
+.|++..+.... ..+..+..+++|+.|++.++...+.++. .+..+++|+.|++++|.....
T Consensus 445 ~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~L~~L~L~~N~l~~~-------- 505 (768)
T 3rgz_A 445 RDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTGEIPS-------GLSNCTNLNWISLSNNRLTGE-------- 505 (768)
T ss_dssp CEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCCSC--------
T ss_pred CEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccCcCCH-------HHhcCCCCCEEEccCCccCCc--------
Confidence 999876655432 3466778888999998888877655554 567789999999998876432
Q ss_pred HHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-C------------------------
Q 002071 780 DQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-L------------------------ 834 (973)
Q Consensus 780 ~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l------------------------ 834 (973)
++..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.....+|. +
T Consensus 506 ---~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 506 ---IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp ---CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred ---CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 234566678999999999998866899999999999999999876655543 2
Q ss_pred ----------------------------------------------CCcCcccceeccccccceeeCcccccccC---CC
Q 002071 835 ----------------------------------------------GKLSSLEKLMIWGLKSVKRVANEFLGIEI---IA 865 (973)
Q Consensus 835 ----------------------------------------------~~l~~L~~L~L~~~~~l~~~~~~~~~~~~---~~ 865 (973)
+.+++|+.|+|+++ .+.+..+ ..
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N--------~l~g~ip~~l~~ 654 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN--------MLSGYIPKEIGS 654 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS--------CCBSCCCGGGGG
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC--------cccccCCHHHhc
Confidence 23344555555442 1211111 23
Q ss_pred CCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCc
Q 002071 866 FPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIP 934 (973)
Q Consensus 866 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l 934 (973)
+++|+.|+++++.--..++. ..+.+++|+.|++++|.....+|..+.++++|+.|++++|+..
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~------~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPD------EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCG------GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred cccCCEEeCcCCccCCCCCh------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 55566666655421112221 2345677777777777433467777777777777777777654
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=6.1e-24 Score=254.69 Aligned_cols=335 Identities=12% Similarity=0.045 Sum_probs=172.9
Q ss_pred CCcccc--CCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccc-cccccccccCccccCC------CCCcE
Q 002071 560 FPISTC--RIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLF-YTKSTILEIPTNVKRL------VHLRY 630 (973)
Q Consensus 560 ~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~~~~~~lp~~i~~L------~~L~~ 630 (973)
+|..+. ++++|+.|.+.++.+. +. .+..+..+++|++|++++|. +++ ..+|..++.+ ++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~-----~~-~p~~l~~l~~L~~L~Ls~n~~l~~---~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNL-----TK-LPTFLKALPEMQLINVACNRGISG---EQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTC-----SS-CCTTTTTCSSCCEEECTTCTTSCH---HHHHHHHHHHHHSGGGGTCCE
T ss_pred CchhhhhcccCCCCEEEecCCcCC-----cc-ChHHHhcCCCCCEEECcCCCCCcc---ccchHHHHhhhccccCCCCCE
Confidence 455555 5666666666555431 11 12235555666666666542 221 0245555444 56666
Q ss_pred EEecCCCccccch--hhhccccccEEecCCCCCCc-ccCccccCCCCcceeecCCCCCCCcccccCCCccc-cccCCeee
Q 002071 631 LNLSHQSIEKLPE--TLCELYNLQKLDVSDCYGLK-ELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTS-LRTLVEFH 706 (973)
Q Consensus 631 L~Ls~~~i~~Lp~--~i~~L~~Lq~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~~ 706 (973)
|++++|.++.+|. .++++++|++|++++|. +. .+| .+..+++|++|++++|.. ..+|..++.+++ |++|++..
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSEE-EECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCcc-ccccHhhhhhcccCcEEEccC
Confidence 6666666556665 56666666666666655 33 555 555566666666665533 255555555655 66655544
Q ss_pred eCCCCCCCCCCccCcccc--cCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHH
Q 002071 707 VSGGGGVGGSNACRLESL--KNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLL 784 (973)
Q Consensus 707 ~~~~~~~~~~~~~~l~~l--~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l 784 (973)
+.... .+..+..+ .+|+.|++.++...+..+............+.+|+.|++++|...... .
T Consensus 387 N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp-----------~ 450 (636)
T 4eco_A 387 NKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP-----------K 450 (636)
T ss_dssp SCCSS-----CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC-----------T
T ss_pred CcCcc-----cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC-----------H
Confidence 33321 22233322 245555555554433322200000000114456666666666543210 0
Q ss_pred hhcCCCCCccEEEEeeecCCCCCCCcccc--------ccCccEEEEecCCCCCcCCC-CC--CcCcccceecccccccee
Q 002071 785 EALQPPLNLKELLIGLYRGNTVFPGWMMP--------LTNLRSLTLEKCEKCKQIPP-LG--KLSSLEKLMIWGLKSVKR 853 (973)
Q Consensus 785 ~~l~~~~~L~~L~L~~~~~~~~lp~~~~~--------l~~L~~L~L~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~ 853 (973)
..+..+++|+.|++++|.+.. +|.++.. +++|+.|+|++|.+. .+|. ++ .+++|+.|+|+++. +..
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ 527 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSK 527 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSS
T ss_pred HHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCC
Confidence 112335677777777777665 6654432 127777777777655 4554 44 67777777777632 221
Q ss_pred eCcccccccCCCCCcccEeeccccccccc--ccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccC
Q 002071 854 VANEFLGIEIIAFPKLKSLTFYWMEEFEE--WDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGC 931 (973)
Q Consensus 854 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c 931 (973)
++.. ...+++|+.|.+.++..+.. ....+ ......+++|+.|++++|. ++.+|..+. ++|+.|++++|
T Consensus 528 ip~~-----~~~l~~L~~L~Ls~N~~ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 528 FPTQ-----PLNSSTLKGFGIRNQRDAQGNRTLREW--PEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp CCCG-----GGGCSSCCEEECCSCBCTTCCBCCCCC--CTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSC
T ss_pred cChh-----hhcCCCCCEEECCCCcccccCcccccC--hHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCC
Confidence 2211 12467777777754321110 00000 1123357778888887774 577777644 67888888887
Q ss_pred CCcc
Q 002071 932 AIPG 935 (973)
Q Consensus 932 ~~l~ 935 (973)
+...
T Consensus 598 ~l~~ 601 (636)
T 4eco_A 598 PNIS 601 (636)
T ss_dssp TTCE
T ss_pred CCcc
Confidence 7653
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=6.4e-24 Score=254.50 Aligned_cols=272 Identities=13% Similarity=0.113 Sum_probs=119.6
Q ss_pred cceEEEEEEccCCC-CCCccccCCCCceEEEeCCcc-cCCCCCchhhHHHHHhhc------ccccEEEeccccccccccc
Q 002071 545 EKVCHLMLSIHEGA-PFPISTCRIKRMRSLLIGGVV-FDHSSLDGNILEELFEEL------TSLRAIEVSKLFYTKSTIL 616 (973)
Q Consensus 545 ~~~r~lsl~~~~~~-~~~~~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~~l------~~Lr~L~L~~~~~~~~~~~ 616 (973)
..++++.+..+... .+|..+.++++|+.|.++++. + .+...+..+..+ ++|++|++++|. +.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-----~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-----l~ 318 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-----SGEQLKDDWQALADAPVGEKIQIIYIGYNN-----LK 318 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-----CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-----CS
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-----ccccchHHHHhhhccccCCCCCEEECCCCc-----CC
Confidence 34455555544322 244445555555555555543 2 120122223333 555555555532 22
Q ss_pred ccCc--cccCCCCCcEEEecCCCcc-ccchhhhccccccEEecCCCCCCcccCccccCCCC-cceeecCCCCCCCccccc
Q 002071 617 EIPT--NVKRLVHLRYLNLSHQSIE-KLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVN-MKHLLDDKTDSLGHMPVG 692 (973)
Q Consensus 617 ~lp~--~i~~L~~L~~L~Ls~~~i~-~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~-L~~L~l~~~~~~~~~p~~ 692 (973)
.+|. .++++.+|++|++++|.+. .+| .++++++|++|++++|. +..+|..+..+++ |++|++++|... .+|..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 3454 5555555555555555555 555 45555555555555554 4455555555555 555555555332 45544
Q ss_pred CCCcc--ccccCCeeeeCCCCCCCCCCccCcc-------cccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEE
Q 002071 693 IGRLT--SLRTLVEFHVSGGGGVGGSNACRLE-------SLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRL 763 (973)
Q Consensus 693 i~~l~--~L~~L~~~~~~~~~~~~~~~~~~l~-------~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L 763 (973)
++.++ +|+.|++..+..... .+..+. .+.+|+.|++.++... .++. ..+..+++|+.|+|
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~------~~~~~l~~L~~L~L 464 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPK------ELFSTGSPLSSINL 464 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCT------HHHHTTCCCSEEEC
T ss_pred hhhcccCccCEEECcCCcCCCc----chhhhcccccccccCCCCCEEECcCCccC-cCCH------HHHccCCCCCEEEC
Confidence 44333 455554443332221 122222 3334444444444332 2221 01223455555555
Q ss_pred EecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccc--cccCccEEEEecCCCCCcCCC-CCCcCcc
Q 002071 764 WFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMM--PLTNLRSLTLEKCEKCKQIPP-LGKLSSL 840 (973)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~--~l~~L~~L~L~~~~~~~~l~~-l~~l~~L 840 (973)
+.|........ ... .....+..+++|+.|++++|.+.. +|..+. .+++|+.|+|++|.+.. +|. ++.+++|
T Consensus 465 s~N~l~~i~~~-~~~---~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 465 MGNMLTEIPKN-SLK---DENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp CSSCCSBCCSS-SSE---ETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred CCCCCCCcCHH-Hhc---cccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 55543211000 000 000000111255555555555553 555544 55555555555555443 433 4555555
Q ss_pred cceecc
Q 002071 841 EKLMIW 846 (973)
Q Consensus 841 ~~L~L~ 846 (973)
+.|+|+
T Consensus 539 ~~L~Ls 544 (636)
T 4eco_A 539 KGFGIR 544 (636)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 555553
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=6.1e-23 Score=231.67 Aligned_cols=308 Identities=16% Similarity=0.098 Sum_probs=238.5
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccccc-
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKLP- 642 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~Lp- 642 (973)
..+++++.|.+.++.+ ..++..+|..+++|++|++++|. +..+| ..++.+.+|++|+|++|.+..+|
T Consensus 42 ~~l~~l~~l~l~~~~l------~~l~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp GGGCCCSEEEEESCEE------SEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccCCceEEEecCCch------hhCChhHhcccccCcEEECCCCc-----ccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence 4578999999998875 44566778999999999999954 44454 58899999999999999999775
Q ss_pred hhhhccccccEEecCCCCCCcccCccc-cCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCc
Q 002071 643 ETLCELYNLQKLDVSDCYGLKELPQGI-GKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRL 721 (973)
Q Consensus 643 ~~i~~L~~Lq~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l 721 (973)
..+.++++|++|++++|. +..+|..+ ..+++|++|++++|......|..++.+++|++|++..+.... ..+
T Consensus 111 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~ 182 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VDL 182 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-------CCG
T ss_pred HHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-------ccc
Confidence 568999999999999997 88888764 889999999999997655556668999999999876654432 235
Q ss_pred ccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeee
Q 002071 722 ESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLY 801 (973)
Q Consensus 722 ~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~ 801 (973)
..+++|+.|++.++... .+....+|+.|++++|..... ....+++|+.|++++|
T Consensus 183 ~~l~~L~~L~l~~n~l~------------~~~~~~~L~~L~l~~n~l~~~--------------~~~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLS------------TLAIPIAVEELDASHNSINVV--------------RGPVNVELTILKLQHN 236 (390)
T ss_dssp GGCTTCSEEECCSSCCS------------EEECCSSCSEEECCSSCCCEE--------------ECCCCSSCCEEECCSS
T ss_pred ccccccceeeccccccc------------ccCCCCcceEEECCCCeeeec--------------cccccccccEEECCCC
Confidence 56777777776655321 233456899999998865422 1123578999999999
Q ss_pred cCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccccccceeeCcccccccCCCCCcccEeeccccccc
Q 002071 802 RGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEF 880 (973)
Q Consensus 802 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l 880 (973)
.+.. +.++..+++|+.|+|++|.+....|. ++.+++|+.|+|.++. ++.++.. ...+|+|+.|++.++ .+
T Consensus 237 ~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~~~l~~L~~L~L~~n-~l 307 (390)
T 3o6n_A 237 NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----GQPIPTLKVLDLSHN-HL 307 (390)
T ss_dssp CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS-----SSCCTTCCEEECCSS-CC
T ss_pred CCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc-----cCCCCCCCEEECCCC-cc
Confidence 9887 46889999999999999987765554 8899999999999843 4333221 136899999999987 45
Q ss_pred ccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCcc
Q 002071 881 EEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIPG 935 (973)
Q Consensus 881 ~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l~ 935 (973)
..++. ....+++|+.|++++|+ ++.+| +..+++|+.|++++|+...
T Consensus 308 ~~~~~------~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 308 LHVER------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCCGG------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred eecCc------cccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccc
Confidence 54432 23468999999999995 77776 5788999999999998643
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=6.2e-23 Score=246.16 Aligned_cols=147 Identities=13% Similarity=0.011 Sum_probs=115.7
Q ss_pred cCcceEEEEEEccCCCCC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 543 LGEKVCHLMLSIHEGAPF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 543 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
.+..++++.+..+.+... +..+.++++|++|+++++.+ ..+.+..|..+++|++|+|++|.++. ..|..
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~ 100 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI------YWIHEDTFQSQHRLDTLVLTANPLIF----MAETA 100 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC------CEECTTTTTTCTTCCEEECTTCCCSE----ECTTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc------ceeChhhccCccccCeeeCCCCcccc----cChhh
Confidence 467889999998887764 55788999999999999865 22344558899999999999965432 24778
Q ss_pred ccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccC-ccccCCCCcceeecCCCCCCCcccccCCCcccc
Q 002071 622 VKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELP-QGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSL 699 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 699 (973)
++++.+|++|++++|.++.+ |..++++++|++|++++|. +..++ +.+..+++|++|++++|......|..++.+++|
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 99999999999999999887 5778999999999999998 65542 334559999999999986654455667777777
Q ss_pred c
Q 002071 700 R 700 (973)
Q Consensus 700 ~ 700 (973)
+
T Consensus 180 ~ 180 (606)
T 3t6q_A 180 T 180 (606)
T ss_dssp C
T ss_pred c
Confidence 7
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=9.7e-23 Score=241.63 Aligned_cols=61 Identities=18% Similarity=0.056 Sum_probs=40.4
Q ss_pred CCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCC--cCC-CCCCcCcccceecccc
Q 002071 788 QPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCK--QIP-PLGKLSSLEKLMIWGL 848 (973)
Q Consensus 788 ~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~-~l~~l~~L~~L~L~~~ 848 (973)
..+++|+.|++++|.+.+..|.++..+++|+.|+|++|.+.. .+| .++.+++|+.|+++++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 445677777777777766566777777777777777776543 122 2667777777777663
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=9e-23 Score=243.22 Aligned_cols=308 Identities=15% Similarity=0.088 Sum_probs=239.7
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccccch
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKLPE 643 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~Lp~ 643 (973)
..+++++.+.+.++.+ ..+++.+|..+++|++|+|++|.+ ..+| ..++.+.+|++|+|++|.+..+|.
T Consensus 48 l~l~~l~~l~l~~~~l------~~lp~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQI-----EEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GGGCCCSEEEESSCEE------SEECTHHHHHCCCCSEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCCCceEEEeeCCCC------CCcCHHHHccCCCCcEEECCCCCC-----CCCChHHhcCCCCCCEEECCCCcCCCCCH
Confidence 3567899999998875 455677789999999999999544 4454 589999999999999999997765
Q ss_pred -hhhccccccEEecCCCCCCcccCcc-ccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCc
Q 002071 644 -TLCELYNLQKLDVSDCYGLKELPQG-IGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRL 721 (973)
Q Consensus 644 -~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l 721 (973)
.++++++|++|+|++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++..+.... ..+
T Consensus 117 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~ 188 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VDL 188 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-------CCG
T ss_pred HHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-------cCh
Confidence 57999999999999997 7788876 4899999999999997766666679999999999876654432 235
Q ss_pred ccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeee
Q 002071 722 ESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLY 801 (973)
Q Consensus 722 ~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~ 801 (973)
..+++|+.|++.++... .+....+|+.|++++|...... ...+++|+.|++++|
T Consensus 189 ~~l~~L~~L~l~~n~l~------------~l~~~~~L~~L~ls~n~l~~~~--------------~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLS------------TLAIPIAVEELDASHNSINVVR--------------GPVNVELTILKLQHN 242 (597)
T ss_dssp GGCTTCSEEECCSSCCS------------EEECCTTCSEEECCSSCCCEEE--------------CSCCSCCCEEECCSS
T ss_pred hhhhhhhhhhcccCccc------------cccCCchhheeeccCCcccccc--------------cccCCCCCEEECCCC
Confidence 56777777776665331 2344568999999988654220 122468999999999
Q ss_pred cCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccccccceeeCcccccccCCCCCcccEeeccccccc
Q 002071 802 RGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEF 880 (973)
Q Consensus 802 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l 880 (973)
.+++ +.++..+++|+.|+|++|.+....|. ++.+++|+.|+|+++. +..++. ....+|+|+.|++.++ .+
T Consensus 243 ~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-----~~~~l~~L~~L~Ls~N-~l 313 (597)
T 3oja_B 243 NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSHN-HL 313 (597)
T ss_dssp CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC-----SSSCCTTCCEEECCSS-CC
T ss_pred CCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCc-----ccccCCCCcEEECCCC-CC
Confidence 9887 67899999999999999988766564 8999999999999843 433322 1136899999999987 34
Q ss_pred ccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCcc
Q 002071 881 EEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIPG 935 (973)
Q Consensus 881 ~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l~ 935 (973)
..++. ....+|+|+.|++++|+ +..+| +..+++|+.|++++|+...
T Consensus 314 ~~i~~------~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 314 LHVER------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCGG------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CccCc------ccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 44432 23468999999999995 77776 4678999999999998643
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.7e-22 Score=224.27 Aligned_cols=305 Identities=16% Similarity=0.220 Sum_probs=199.5
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchh
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPET 644 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~ 644 (973)
..+++|++|.+.++.+. .+ +. +..+++|++|++++|. +..+|. +..+++|++|++++|.++.+| .
T Consensus 41 ~~l~~L~~L~l~~~~i~------~~-~~-~~~~~~L~~L~l~~n~-----i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~ 105 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA------SI-QG-IEYLTNLEYLNLNGNQ-----ITDISP-LSNLVKLTNLYIGTNKITDIS-A 105 (347)
T ss_dssp HHHTTCSEEECCSSCCC------CC-TT-GGGCTTCCEEECCSSC-----CCCCGG-GTTCTTCCEEECCSSCCCCCG-G
T ss_pred hhcccccEEEEeCCccc------cc-hh-hhhcCCccEEEccCCc-----cccchh-hhcCCcCCEEEccCCcccCch-H
Confidence 35566677776665541 11 11 5566777777777743 333444 667777777777777776665 3
Q ss_pred hhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccc
Q 002071 645 LCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESL 724 (973)
Q Consensus 645 i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l 724 (973)
+.++++|++|++++|. +..+|. +..+++|++|++++|......+ .+..+++|++|++..+.... ...+..+
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~------~~~~~~l 176 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD------VTPIANL 176 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC------CGGGGGC
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC------chhhccC
Confidence 6777777777777766 555555 6677777777777765444333 36666677766655443332 1125556
Q ss_pred cCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCC
Q 002071 725 KNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGN 804 (973)
Q Consensus 725 ~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~ 804 (973)
++|+.|++.++... .++ .+..+++|+.|++++|..... ..+..+++|++|++++|.+.
T Consensus 177 ~~L~~L~l~~n~l~-~~~--------~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 177 TDLYSLSLNYNQIE-DIS--------PLASLTSLHYFTAYVNQITDI-------------TPVANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp TTCSEEECTTSCCC-CCG--------GGGGCTTCCEEECCSSCCCCC-------------GGGGGCTTCCEEECCSSCCC
T ss_pred CCCCEEEccCCccc-ccc--------cccCCCccceeecccCCCCCC-------------chhhcCCcCCEEEccCCccC
Confidence 66666665555332 111 155677888888887755322 11556788999999999887
Q ss_pred CCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceeccccccceeeCcccccccCCCCCcccEeeccccccccccc
Q 002071 805 TVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWD 884 (973)
Q Consensus 805 ~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 884 (973)
. +|. +..+++|+.|++++|.... ++.+..+++|+.|+++++. +..+. ....+++|+.|++.++. +....
T Consensus 235 ~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 235 D-LSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS------VLNNLSQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp C-CGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG------GGGGCTTCSEEECCSSC-CCGGG
T ss_pred C-Ccc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh------hhcCCCCCCEEECcCCc-CCCcC
Confidence 7 655 7788999999999987644 5678889999999998853 33221 12368899999998873 33221
Q ss_pred ccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCC
Q 002071 885 YGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAI 933 (973)
Q Consensus 885 ~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~ 933 (973)
. .....+|+|+.|++++|+ ++.+++ +..+++|++|++++|++
T Consensus 304 ~-----~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 304 M-----EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp H-----HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred h-----hHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 1 122368999999999995 777765 78899999999999975
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.3e-22 Score=243.48 Aligned_cols=360 Identities=15% Similarity=0.066 Sum_probs=209.3
Q ss_pred cCcceEEEEEEccCCCCCC-ccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-Cc
Q 002071 543 LGEKVCHLMLSIHEGAPFP-ISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PT 620 (973)
Q Consensus 543 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~ 620 (973)
.+..++++.+..+.....+ ..+.++++|++|+++++.+ ..+.+..|..+++|++|+|++|.+ ..+ |.
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------~~i~~~~~~~l~~L~~L~Ls~n~l-----~~~~p~ 98 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI------ETIEDKAWHGLHHLSNLILTGNPI-----QSFSPG 98 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC------CEECTTTTTTCTTCCEEECTTCCC-----CCCCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc------cccCHHHhhchhhcCEeECCCCcc-----cccChh
Confidence 3678899999888776533 3678899999999998865 233445578899999999999544 344 78
Q ss_pred cccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCc-ccCccccCCCCcceeecCCCCCCCcccccCCCccc
Q 002071 621 NVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLK-ELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTS 698 (973)
Q Consensus 621 ~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 698 (973)
.++++.+|++|+|++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 8999999999999999998776 679999999999999998332 57889999999999999999665555666777777
Q ss_pred ccc----CCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCC
Q 002071 699 LRT----LVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGR 774 (973)
Q Consensus 699 L~~----L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 774 (973)
|+. |++..+... ...+..+. ..+|+.|++.++... .......+..+++|+.+.+..+........
T Consensus 179 L~~~l~~L~l~~n~l~----~~~~~~~~-~~~L~~L~L~~n~~~------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPID----FIQDQAFQ-GIKLHELTLRGNFNS------SNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTCCCEEECTTCCCC----EECTTTTT-TCEEEEEEEESCCSC------HHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccceeeccCCCcc----eeCccccc-CceeeeeeccCCccc------hhHHHHHhccccccccccccccccccCCcc
Confidence 763 443332221 11112222 225555555554321 011122233344444444433221110000
Q ss_pred C---------------------CcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC
Q 002071 775 R---------------------KEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP 833 (973)
Q Consensus 775 ~---------------------~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 833 (973)
. ...........+..+++|+.|++.++.+.. +| ++..+++|+.|++++|.. ..+|.
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~ 324 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT 324 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC
T ss_pred cccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccccc
Confidence 0 000000000013334455555555555444 44 444455555555555544 34444
Q ss_pred CCCcCcccceeccccccceeeC--------------ccccc-----ccCCCCCcccEeecccccccccccccccCCCccC
Q 002071 834 LGKLSSLEKLMIWGLKSVKRVA--------------NEFLG-----IEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTS 894 (973)
Q Consensus 834 l~~l~~L~~L~L~~~~~l~~~~--------------~~~~~-----~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 894 (973)
+ .+++|+.|++.++..+.... +.+.+ .....+++|+.|++.++. +...+ ....
T Consensus 325 ~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~------~~~~ 396 (606)
T 3vq2_A 325 L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS------ANFM 396 (606)
T ss_dssp C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC------CCCT
T ss_pred C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch------hhcc
Confidence 4 44555555544432221110 00000 001245666666666553 32222 1234
Q ss_pred cccccceeeeccCccCCCCC-CCCCCCCCcceEEEccCCCcc
Q 002071 895 IMPCLSYLAIISCPKLKALP-DHFHQMTTLKELYILGCAIPG 935 (973)
Q Consensus 895 ~~p~L~~L~i~~c~~l~~lp-~~l~~l~~L~~L~i~~c~~l~ 935 (973)
.+++|+.|++++|......| ..+.++++|+.|++++|....
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 67888888888885433334 367788899999999887644
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=7.5e-23 Score=242.43 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=109.5
Q ss_pred CcceEEEEEEccCCCCC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-c
Q 002071 544 GEKVCHLMLSIHEGAPF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT-N 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~-~ 621 (973)
+..++++.+..+..... +..+..+++|++|+++++.+ ....+..|..+++|++|+|++|.+ ..+|. .
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~ 93 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI------NTIEGDAFYSLGSLEHLDLSDNHL-----SSLSSSW 93 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTSCC-----CSCCHHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc------CccChhhccccccCCEEECCCCcc-----CccCHHH
Confidence 45788888888776553 45677888899998888765 223344477888888888888544 34544 4
Q ss_pred ccCCCCCcEEEecCCCccc--cchhhhccccccEEecCCCCCCcccC-ccccCCCCcceeecCCCCCCCcccccCCCccc
Q 002071 622 VKRLVHLRYLNLSHQSIEK--LPETLCELYNLQKLDVSDCYGLKELP-QGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTS 698 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~--Lp~~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 698 (973)
++++++|++|++++|.++. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 8888888888888888874 46678888888888888887566666 46788888888888888665556777766666
Q ss_pred cccCCee
Q 002071 699 LRTLVEF 705 (973)
Q Consensus 699 L~~L~~~ 705 (973)
|++|++.
T Consensus 174 L~~L~l~ 180 (549)
T 2z81_A 174 IHHLTLH 180 (549)
T ss_dssp EEEEEEE
T ss_pred CceEecc
Confidence 6655543
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=4.3e-22 Score=229.91 Aligned_cols=366 Identities=16% Similarity=0.103 Sum_probs=241.8
Q ss_pred cCcceEEEEEEccCCCCC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 543 LGEKVCHLMLSIHEGAPF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 543 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
.+..++++.+..+.+... +..+.++++|++|.+.++.+. ..+.+..|..+++|++|+|++|.++. ..|..
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-----~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~ 98 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-----LVIRNNTFRGLSSLIILKLDYNQFLQ----LETGA 98 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-----CEECTTTTTTCTTCCEEECTTCTTCE----ECTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-----ceECcccccccccCCEEeCCCCccCc----cChhh
Confidence 467788888888877653 556788888999988887541 12334447788889999998854432 23677
Q ss_pred ccCCCCCcEEEecCCCccc-cchh--hhccccccEEecCCCCCCccc-Ccc-ccCCCCcceeecCCCCCCCcccccCCCc
Q 002071 622 VKRLVHLRYLNLSHQSIEK-LPET--LCELYNLQKLDVSDCYGLKEL-PQG-IGKLVNMKHLLDDKTDSLGHMPVGIGRL 696 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~-Lp~~--i~~L~~Lq~L~L~~~~~~~~l-p~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l 696 (973)
++++.+|++|+|++|.++. +|.. +.++++|++|++++|. +..+ |.. +..+++|++|++++|......|..++.+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 8888999999999888874 4444 8888899999999887 5444 554 7788889999998887666666666655
Q ss_pred --cccccCCeeeeCCCCCCCCCCc----cCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCC
Q 002071 697 --TSLRTLVEFHVSGGGGVGGSNA----CRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEE 770 (973)
Q Consensus 697 --~~L~~L~~~~~~~~~~~~~~~~----~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 770 (973)
.+|+.|++..+........... ..+..+++|+.|++.++...+..+ ... .......+|+.|+++.+....
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~~-~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA---KRF-FDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH---HHH-HHHTTTCCEEEEECTTCTTTS
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch---hhh-hccccccceeeEeeccccccc
Confidence 5666666544433321110000 112234556666665554322111 111 122234677888877653321
Q ss_pred CCCCCC--cchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccc
Q 002071 771 DGGRRK--EEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 771 ~~~~~~--~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 847 (973)
...... .......+.. ...++|+.|++++|.+....|.++..+++|+.|+|++|.+....|. ++.+++|++|+|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp CCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccchhhhccCccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 100000 0000000011 1246899999999999886788899999999999999988765553 88999999999998
Q ss_pred cccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCC-CCCCCCcceE
Q 002071 848 LKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDH-FHQMTTLKEL 926 (973)
Q Consensus 848 ~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~-l~~l~~L~~L 926 (973)
+. +..+..... ..+++|+.|++.++ .+.... ......+++|+.|++++| .++.+|.. +..+++|++|
T Consensus 333 N~-l~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 333 NF-LGSIDSRMF----ENLDKLEVLDLSYN-HIRALG-----DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp SC-CCEECGGGG----TTCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred Cc-cCCcChhHh----cCcccCCEEECCCC-cccccC-----hhhccccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence 53 333322211 36899999999887 343332 122346899999999998 57888874 5789999999
Q ss_pred EEccCCCcc
Q 002071 927 YILGCAIPG 935 (973)
Q Consensus 927 ~i~~c~~l~ 935 (973)
++++|+...
T Consensus 401 ~l~~N~l~~ 409 (455)
T 3v47_A 401 WLHTNPWDC 409 (455)
T ss_dssp ECCSSCBCC
T ss_pred EccCCCccc
Confidence 999998643
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=6e-22 Score=228.92 Aligned_cols=326 Identities=19% Similarity=0.229 Sum_probs=181.0
Q ss_pred cceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccC
Q 002071 545 EKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKR 624 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~ 624 (973)
..++.+.+..+....++ .+..+++|+.|+++++.+. .+++ +..+++|++|++++|.+ ..++. +++
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~------~~~~--~~~l~~L~~L~l~~n~l-----~~~~~-~~~ 110 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT------DITP--LKNLTKLVDILMNNNQI-----ADITP-LAN 110 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC------CCGG--GTTCTTCCEEECCSSCC-----CCCGG-GTT
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccC------Cchh--hhccccCCEEECCCCcc-----ccChh-hcC
Confidence 45666666655554433 3556677777777766541 1122 56667777777776433 33443 666
Q ss_pred CCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCe
Q 002071 625 LVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVE 704 (973)
Q Consensus 625 L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 704 (973)
+++|++|++++|.++.+|. +.++++|++|++++|. +..+|. +..+++|++|+++++ . ...+. ++.+++|+.|++
T Consensus 111 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~-~-~~~~~-~~~l~~L~~L~l 184 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ-V-TDLKP-LANLTTLERLDI 184 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES-C-CCCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc-c-cCchh-hccCCCCCEEEC
Confidence 7777777777776666654 6667777777777665 444442 455555555554322 1 11111 444444444444
Q ss_pred eeeCCCCC------------------CCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEec
Q 002071 705 FHVSGGGG------------------VGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFD 766 (973)
Q Consensus 705 ~~~~~~~~------------------~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 766 (973)
..+..... ... ...+..+++|+.|++.++...+ + ..+..+++|+.|++++|
T Consensus 185 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~-~--------~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 185 SSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD-I--------GTLASLTNLTDLDLANN 253 (466)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCC-C--------GGGGGCTTCSEEECCSS
T ss_pred cCCcCCCChhhccCCCCCEEEecCCcccc--cccccccCCCCEEECCCCCccc-c--------hhhhcCCCCCEEECCCC
Confidence 33322210 000 0013334444444443332211 1 12344566666666655
Q ss_pred CCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceecc
Q 002071 767 KEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIW 846 (973)
Q Consensus 767 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 846 (973)
..... ..+..+++|+.|++++|.+.. +|. +..+++|+.|++++|.... ++.++.+++|+.|+|+
T Consensus 254 ~l~~~-------------~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 254 QISNL-------------APLSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLY 317 (466)
T ss_dssp CCCCC-------------GGGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECC
T ss_pred ccccc-------------hhhhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECc
Confidence 43221 114556677777777776665 444 5667777777777776543 4446677777777777
Q ss_pred ccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceE
Q 002071 847 GLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKEL 926 (973)
Q Consensus 847 ~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L 926 (973)
++. +..+.. ...+++|+.|.+.++ .+...+ ....+++|+.|++++|+ +..+++ +..+++|+.|
T Consensus 318 ~n~-l~~~~~------~~~l~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 380 (466)
T 1o6v_A 318 FNN-ISDISP------VSSLTKLQRLFFYNN-KVSDVS-------SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQL 380 (466)
T ss_dssp SSC-CSCCGG------GGGCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEE
T ss_pred CCc-CCCchh------hccCccCCEeECCCC-ccCCch-------hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEE
Confidence 643 221111 235777888887766 333221 23467888888888884 555554 6788889999
Q ss_pred EEccCCCcc
Q 002071 927 YILGCAIPG 935 (973)
Q Consensus 927 ~i~~c~~l~ 935 (973)
++++|+...
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 988887654
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=8.8e-23 Score=243.12 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=110.0
Q ss_pred cCcceEEEEEEccCCCCC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-Cc
Q 002071 543 LGEKVCHLMLSIHEGAPF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PT 620 (973)
Q Consensus 543 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~ 620 (973)
.+..++++.+..+..... +..+..+++|++|+++++.+ ..+.+..|..+++|++|+|++|.+ ..+ |.
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i------~~i~~~~~~~l~~L~~L~L~~n~l-----~~~~~~ 94 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI------QTIEDGAYQSLSHLSTLILTGNPI-----QSLALG 94 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC------CEECTTTTTTCTTCCEEECTTCCC-----CEECTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC------CccCcccccCchhCCEEeCcCCcC-----CccCHh
Confidence 366789999988877653 34678899999999998865 223445578899999999999544 344 46
Q ss_pred cccCCCCCcEEEecCCCccccch-hhhccccccEEecCCCCCCc--ccCccccCCCCcceeecCCCCCCCcccccCCCcc
Q 002071 621 NVKRLVHLRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLK--ELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLT 697 (973)
Q Consensus 621 ~i~~L~~L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 697 (973)
.++.+.+|++|++++|.++.+|. .++++++|++|++++|. +. .+|..++++++|++|++++|......|..++.++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 78889999999999998888775 68889999999999887 44 3688888899999999988865444444455555
Q ss_pred cc
Q 002071 698 SL 699 (973)
Q Consensus 698 ~L 699 (973)
+|
T Consensus 174 ~L 175 (570)
T 2z63_A 174 QM 175 (570)
T ss_dssp TC
T ss_pred cc
Confidence 55
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=242.29 Aligned_cols=350 Identities=17% Similarity=0.125 Sum_probs=233.5
Q ss_pred cCcceEEEEEEccCCCC-CCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 543 LGEKVCHLMLSIHEGAP-FPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 543 ~~~~~r~lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
.+..++++.+..+.+.. .+..+.++++|+.|+++++... ..+.+..|.++++|++|+|++|.+.. ..|..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-----~~i~~~~f~~L~~L~~L~Ls~N~l~~----~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-----LTIDKEAFRNLPNLRILDLGSSKIYF----LHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-----CEECTTTTSSCTTCCEEECTTCCCCE----ECTTS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-----cccCHHHhcCCCCCCEEECCCCcCcc----cCHhH
Confidence 47889999999988765 3567889999999999988421 23335558899999999999955432 24888
Q ss_pred ccCCCCCcEEEecCCCccc-cchh--hhccccccEEecCCCCCCccc--CccccCCCCcceeecCCCCCCCcccccCCCc
Q 002071 622 VKRLVHLRYLNLSHQSIEK-LPET--LCELYNLQKLDVSDCYGLKEL--PQGIGKLVNMKHLLDDKTDSLGHMPVGIGRL 696 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~-Lp~~--i~~L~~Lq~L~L~~~~~~~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 696 (973)
++++.+|++|+|++|.+.. +|.. +.++++|++|+|++|. +..+ +..++++++|++|++++|......|..++.+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999874 5655 8999999999999998 5444 3578999999999999997766677777777
Q ss_pred --cccccCCeeeeCCCCCCCCCCccCccccc------CCCccCceeeeccCCCCChh-----------------------
Q 002071 697 --TSLRTLVEFHVSGGGGVGGSNACRLESLK------NLELLHVCGIRRLGNVTDVG----------------------- 745 (973)
Q Consensus 697 --~~L~~L~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~~~~~~~l~~~~~~~----------------------- 745 (973)
++|+.|++..+...... +..+..+. +|+.|++.++......+...
T Consensus 172 ~~~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp HHCSSCCCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cCCccceEECCCCcccccc----ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 78888887665544321 22222222 36666666653322221100
Q ss_pred ------hhhhhhccC--CCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCc
Q 002071 746 ------EAKRLELDK--MKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNL 817 (973)
Q Consensus 746 ------~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L 817 (973)
......+.. ..+|+.|+++.|..... ....+..+++|+.|+|++|.+....|..+..+++|
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-----------NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE-----------CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred cccccCCCChhhhhccccCCccEEECCCCccccc-----------ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 000011111 25677777776654321 12345667788888888888777456677788888
Q ss_pred cEEEEecCCCCCcCCC-CCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcc
Q 002071 818 RSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIM 896 (973)
Q Consensus 818 ~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 896 (973)
+.|+|++|.+....|. ++.+++|+.|+|.++. +..+.... ...+++|+.|.+.++. +..+ ..+
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~----~~~l~~L~~L~Ls~N~-l~~i----------~~~ 380 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQT----FKFLEKLQTLDLRDNA-LTTI----------HFI 380 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSC----SCSCCCCCEEEEETCC-SCCC----------SSC
T ss_pred CEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhh----hcCCCCCCEEECCCCC-CCcc----------cCC
Confidence 8888888876554443 7788888888887742 32222111 1246777777776652 2211 125
Q ss_pred cccceeeeccCccCCCCCCC----------------------CCCCCCcceEEEccCCCc
Q 002071 897 PCLSYLAIISCPKLKALPDH----------------------FHQMTTLKELYILGCAIP 934 (973)
Q Consensus 897 p~L~~L~i~~c~~l~~lp~~----------------------l~~l~~L~~L~i~~c~~l 934 (973)
|+|+.|++++| .++.+|.. +.++++|+.|++++|...
T Consensus 381 ~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 381 PSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp CSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 56666666665 34444432 236788889999888754
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.2e-22 Score=239.99 Aligned_cols=105 Identities=25% Similarity=0.318 Sum_probs=56.4
Q ss_pred cceEEEEEEccCCCCC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccc
Q 002071 545 EKVCHLMLSIHEGAPF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNV 622 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i 622 (973)
..++++.+..+..... +..+.++++|++|+++++.+. ...+..|..+++|++|++++|.+ ..+| ..+
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~------~~~p~~~~~l~~L~~L~L~~n~l-----~~~~~~~~ 124 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ------SFSPGSFSGLTSLENLVAVETKL-----ASLESFPI 124 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------CCCTTSSTTCTTCCEEECTTSCC-----CCSSSSCC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc------ccChhhcCCcccCCEEEccCCcc-----cccccccc
Confidence 4456666655554432 334556666666666665431 12233355666666666666333 2232 445
Q ss_pred cCCCCCcEEEecCCCcc--ccchhhhccccccEEecCCCC
Q 002071 623 KRLVHLRYLNLSHQSIE--KLPETLCELYNLQKLDVSDCY 660 (973)
Q Consensus 623 ~~L~~L~~L~Ls~~~i~--~Lp~~i~~L~~Lq~L~L~~~~ 660 (973)
+++.+|++|++++|.+. .+|..++++++|++|++++|.
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 55666666666666554 345556666666666665554
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=8.5e-22 Score=228.78 Aligned_cols=129 Identities=23% Similarity=0.259 Sum_probs=80.5
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCCCCcEEEecCCCccccchh-h
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKLPET-L 645 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~Lp~~-i 645 (973)
++++.|+++++.+ ..+.+..|..+++|++|+|++|.+ ..+ |..++++++|++|+|++|.++.+|.. +
T Consensus 32 ~~l~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 32 TETRLLDLGKNRI------KTLNQDEFASFPHLEELELNENIV-----SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp TTCSEEECCSSCC------CEECTTTTTTCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred CCCcEEECCCCcc------ceECHhHccCCCCCCEEECCCCcc-----CEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 4667777776654 122233466677777777777433 233 56677777777777777777766643 5
Q ss_pred hccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeee
Q 002071 646 CELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHV 707 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 707 (973)
.++++|++|+|++|......|..+..+++|++|++++|......|..++.+++|+.|++..+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 67777777777777633334556677777777777776544444455666666666655443
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=3.9e-21 Score=220.12 Aligned_cols=304 Identities=18% Similarity=0.135 Sum_probs=199.8
Q ss_pred cccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccc
Q 002071 563 STCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLP 642 (973)
Q Consensus 563 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp 642 (973)
.+.++++|++|+++++.+. .+ + .+..+++|++|++++|.++ .+| ++.+++|++|++++|.++.+|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~------~~-~-~l~~l~~L~~L~Ls~n~l~-----~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSIT------DM-T-GIEKLTGLTKLICTSNNIT-----TLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCC------CC-T-TGGGCTTCSEEECCSSCCS-----CCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ChhHcCCCCEEEccCCCcc------cC-h-hhcccCCCCEEEccCCcCC-----eEc--cccCCCCCEEECcCCCCceee
Confidence 4456778888888777652 11 2 2677788888888885443 344 777888888888888887775
Q ss_pred hhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcc
Q 002071 643 ETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLE 722 (973)
Q Consensus 643 ~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 722 (973)
++++++|++|++++|. +..+| ++.+++|++|++++|.. ..+| ++.+++|+.|++..+.... ...+.
T Consensus 102 --~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~------~~~~~ 167 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKIT------KLDVT 167 (457)
T ss_dssp --CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCC------CCCCT
T ss_pred --cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccc------ccccc
Confidence 7788888888888886 66665 77888888888887754 3343 6777777777665543222 11355
Q ss_pred cccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeec
Q 002071 723 SLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYR 802 (973)
Q Consensus 723 ~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~ 802 (973)
.+++|+.|++.++...+ + .+..+++|+.|++++|..... .+..+++|+.|++++|.
T Consensus 168 ~l~~L~~L~ls~n~l~~-l---------~l~~l~~L~~L~l~~N~l~~~--------------~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE-L---------DVSQNKLLNRLNCDTNNITKL--------------DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp TCTTCCEEECCSSCCCC-C---------CCTTCTTCCEEECCSSCCSCC--------------CCTTCTTCSEEECCSSC
T ss_pred cCCcCCEEECCCCccce-e---------ccccCCCCCEEECcCCcCCee--------------ccccCCCCCEEECcCCc
Confidence 66777777766654322 2 145677888888887765321 25567888888888888
Q ss_pred CCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceec----------cccccceeeCcccccccCCCCCcccEe
Q 002071 803 GNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMI----------WGLKSVKRVANEFLGIEIIAFPKLKSL 872 (973)
Q Consensus 803 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L----------~~~~~l~~~~~~~~~~~~~~f~~L~~L 872 (973)
+.+ +| +..+++|+.|++++|.+.. +| ++.+++|+.|.+ .+|..+..+ ....+++|+.|
T Consensus 224 l~~-ip--~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~-------~~~~l~~L~~L 291 (457)
T 3bz5_A 224 LTE-ID--VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF-------QAEGCRKIKEL 291 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE-------ECTTCTTCCCC
T ss_pred ccc-cC--ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCCCCEEECCCCccCCcc-------cccccccCCEE
Confidence 877 77 6678888888888887654 33 445555554444 333322111 12357888888
Q ss_pred ecccccccccccccccC--CCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCc
Q 002071 873 TFYWMEEFEEWDYGITG--MGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIP 934 (973)
Q Consensus 873 ~l~~~~~l~~~~~~~~~--~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l 934 (973)
++.+++.+..++..... .-....+|+|+.|++++| .++.+| +.++++|+.|++++|...
T Consensus 292 ~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 292 DVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCCC
T ss_pred ECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCCC
Confidence 88887665554431110 011335678888888877 577765 678899999999888754
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.8e-21 Score=233.41 Aligned_cols=349 Identities=15% Similarity=0.128 Sum_probs=184.7
Q ss_pred cceEEEEEEccCCCCCC-ccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhccccc--EEEecccccccccccccCcc
Q 002071 545 EKVCHLMLSIHEGAPFP-ISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLR--AIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr--~L~L~~~~~~~~~~~~lp~~ 621 (973)
..++.+.+..+.....+ ..+..+++|+.|.+.++.+ ....+..|..++.|+ .|++++|.++. ++..
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~l~L~l~~n~l~~-----~~~~ 197 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI------HYLSKEDMSSLQQATNLSLNLNGNDIAG-----IEPG 197 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC------CEECHHHHHTTTTCCSEEEECTTCCCCE-----ECTT
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcc------cccChhhhhhhcccceeEEecCCCccCc-----cChh
Confidence 45677777766655421 3334477788888777654 233455577788887 77777765432 1111
Q ss_pred ccCCC----------------------------------------------------CCcEEEecCCCccccch-hhhcc
Q 002071 622 VKRLV----------------------------------------------------HLRYLNLSHQSIEKLPE-TLCEL 648 (973)
Q Consensus 622 i~~L~----------------------------------------------------~L~~L~Ls~~~i~~Lp~-~i~~L 648 (973)
..... +|++|++++|.++.+|. .+.++
T Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l 277 (606)
T 3t6q_A 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277 (606)
T ss_dssp TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC
T ss_pred HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccc
Confidence 11111 45666666666665543 36667
Q ss_pred ccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCC
Q 002071 649 YNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLE 728 (973)
Q Consensus 649 ~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 728 (973)
++|++|++++|. +..+|..+..+++|++|++++|......|..++.+++|++|++..+..... .....+..+++|+
T Consensus 278 ~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 278 SGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE---LGTGCLENLENLR 353 (606)
T ss_dssp TTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB---CCSSTTTTCTTCC
T ss_pred cCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc---cchhhhhccCcCC
Confidence 777777777765 666776677777777777777655444455666666777666554432211 1122345556666
Q ss_pred ccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCC
Q 002071 729 LLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFP 808 (973)
Q Consensus 729 ~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp 808 (973)
.|++.++...... .....+..+++|+.|++++|..... ....+..+++|+.|++++|.+....|
T Consensus 354 ~L~l~~n~l~~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 354 ELDLSHDDIETSD-----CCNLQLRNLSHLQSLNLSYNEPLSL-----------KTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp EEECCSSCCCEEE-----ESTTTTTTCTTCCEEECCSCSCEEE-----------CTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred EEECCCCcccccc-----CcchhcccCCCCCEEECCCCcCCcC-----------CHHHhcCCccCCeEECCCCcCCCccc
Confidence 6665554332111 0011345566677777666643211 12234455666666666666554222
Q ss_pred -CccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccccccceeeCcccc-cccCCCCCcccEeecccccccccccc
Q 002071 809 -GWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGLKSVKRVANEFL-GIEIIAFPKLKSLTFYWMEEFEEWDY 885 (973)
Q Consensus 809 -~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~-~~~~~~f~~L~~L~l~~~~~l~~~~~ 885 (973)
.++..+++|+.|++++|......|. ++.+++|++|+|+++.--. ..+. ......+++|+.|++.++ .+.....
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 493 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK---GNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ 493 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG---GEECSSCGGGGCTTCCEEECTTS-CCCEECT
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc---cccccchhhccCCCccEEECCCC-ccCccCh
Confidence 3355666666666666665444333 5666666666666543100 0000 001124566666666555 2222210
Q ss_pred cccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCc
Q 002071 886 GITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIP 934 (973)
Q Consensus 886 ~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l 934 (973)
.....+++|+.|++++|......|..+.++++| .|++++|...
T Consensus 494 -----~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 494 -----HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp -----TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred -----hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 112345666666666663222334445555555 5666665543
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.2e-21 Score=224.27 Aligned_cols=306 Identities=19% Similarity=0.245 Sum_probs=205.1
Q ss_pred cceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccC
Q 002071 545 EKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKR 624 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~ 624 (973)
..++++.+..+.....+. +..+++|+.|.+.++.+. ...+ +..+++|++|++++|.+ ..+|. +.+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~------~~~~--~~~l~~L~~L~L~~n~l-----~~~~~-~~~ 132 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA------DITP--LANLTNLTGLTLFNNQI-----TDIDP-LKN 132 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC------CCGG--GTTCTTCCEEECCSSCC-----CCCGG-GTT
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCCccc------cChh--hcCCCCCCEEECCCCCC-----CCChH-HcC
Confidence 456666666665554433 556666666666665431 1111 55566666666666332 22332 555
Q ss_pred CCCCcEEEecCCCccccch--------------------hhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCC
Q 002071 625 LVHLRYLNLSHQSIEKLPE--------------------TLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTD 684 (973)
Q Consensus 625 L~~L~~L~Ls~~~i~~Lp~--------------------~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 684 (973)
+++|++|++++|.+..+|. .+.++++|++|++++|. +..++. +..+++|++|++++|.
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQ 210 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSC
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCc
Confidence 5566666665555444332 26677788888888876 666553 7788888888888885
Q ss_pred CCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEE
Q 002071 685 SLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLW 764 (973)
Q Consensus 685 ~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 764 (973)
.....| ++.+++|+.|++..+.... ...+..+++|+.|++.++...+. + .+..+++|+.|+++
T Consensus 211 l~~~~~--~~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~l~~n~l~~~-~--------~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 211 ISDITP--LGILTNLDELSLNGNQLKD------IGTLASLTNLTDLDLANNQISNL-A--------PLSGLTKLTELKLG 273 (466)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCCC-G--------GGTTCTTCSEEECC
T ss_pred cccccc--ccccCCCCEEECCCCCccc------chhhhcCCCCCEEECCCCccccc-h--------hhhcCCCCCEEECC
Confidence 543333 6778888888776654433 23466778888888777654321 1 26778999999999
Q ss_pred ecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCccccee
Q 002071 765 FDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLM 844 (973)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 844 (973)
+|..... ..+..+++|+.|++++|.+.. ++. +..+++|+.|+|++|..... ++++.+++|+.|+
T Consensus 274 ~n~l~~~-------------~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~ 337 (466)
T 1o6v_A 274 ANQISNI-------------SPLAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLF 337 (466)
T ss_dssp SSCCCCC-------------GGGTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCC-GGGGGCTTCCEEE
T ss_pred CCccCcc-------------ccccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCc-hhhccCccCCEeE
Confidence 9876432 126678999999999999887 554 78999999999999987654 4488999999999
Q ss_pred ccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCC
Q 002071 845 IWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDH 916 (973)
Q Consensus 845 L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~ 916 (973)
+.++. +..+. ....+++|+.|++.++. +..+. +...+++|+.|++++|+ +..+|..
T Consensus 338 l~~n~-l~~~~------~l~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 338 FYNNK-VSDVS------SLANLTNINWLSAGHNQ-ISDLT-------PLANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp CCSSC-CCCCG------GGTTCTTCCEEECCSSC-CCBCG-------GGTTCTTCCEEECCCEE-EECCCBC
T ss_pred CCCCc-cCCch------hhccCCCCCEEeCCCCc-cCccc-------hhhcCCCCCEEeccCCc-ccCCchh
Confidence 99863 33221 12368999999998873 43332 24578999999999995 5666654
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=229.17 Aligned_cols=144 Identities=18% Similarity=0.108 Sum_probs=115.7
Q ss_pred EEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCC
Q 002071 548 CHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLV 626 (973)
Q Consensus 548 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~ 626 (973)
+++.+..+....+|..+. ++|+.|+++++.+ ....+..|..+++|++|+|++|.++ .+ |..+++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i------~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYI------SELWTSDILSLSKLRILIISHNRIQ-----YLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCC------CCCCHHHHTTCTTCCEEECCSSCCC-----EEEGGGGTTCT
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcc------cccChhhccccccccEEecCCCccC-----CcChHHhhccc
Confidence 456666676666665544 8999999999876 2345566899999999999996543 44 78899999
Q ss_pred CCcEEEecCCCccccchhhhccccccEEecCCCCCCc-ccCccccCCCCcceeecCCCCCCCcccccCCCcccc--ccCC
Q 002071 627 HLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLK-ELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSL--RTLV 703 (973)
Q Consensus 627 ~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~ 703 (973)
+|++|+|++|.++.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.... ..++.+++| +.|+
T Consensus 70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVL 144 (520)
T ss_dssp TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEE
T ss_pred CCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEE
Confidence 999999999999999987 89999999999998333 367899999999999999986533 346677777 8888
Q ss_pred eeeeCC
Q 002071 704 EFHVSG 709 (973)
Q Consensus 704 ~~~~~~ 709 (973)
+..+..
T Consensus 145 l~~n~l 150 (520)
T 2z7x_B 145 LVLGET 150 (520)
T ss_dssp EEECTT
T ss_pred eecccc
Confidence 877654
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=9.7e-21 Score=216.85 Aligned_cols=284 Identities=16% Similarity=0.114 Sum_probs=216.3
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLV 673 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~ 673 (973)
+..++.|++|++++|.+ ..+| .++.+++|++|+|++|.++.+| ++.+++|++|++++|. +..+| ++.++
T Consensus 38 ~~~l~~L~~L~Ls~n~l-----~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~ 106 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSI-----TDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLT 106 (457)
T ss_dssp HHHHTTCCEEECCSSCC-----CCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCT
T ss_pred hhHcCCCCEEEccCCCc-----ccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCC
Confidence 67789999999999554 4466 6899999999999999999987 8999999999999998 77776 88999
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhcc
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELD 753 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~ 753 (973)
+|++|++++|.. ..+| ++.+++|+.|++..+.... ..+..+++|+.|++.++..++.+ .+.
T Consensus 107 ~L~~L~L~~N~l-~~l~--~~~l~~L~~L~l~~N~l~~-------l~l~~l~~L~~L~l~~n~~~~~~---------~~~ 167 (457)
T 3bz5_A 107 KLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLTE-------IDVSHNTQLTELDCHLNKKITKL---------DVT 167 (457)
T ss_dssp TCCEEECCSSCC-SCCC--CTTCTTCCEEECTTSCCSC-------CCCTTCTTCCEEECTTCSCCCCC---------CCT
T ss_pred cCCEEECCCCcC-Ceec--CCCCCcCCEEECCCCccce-------eccccCCcCCEEECCCCCccccc---------ccc
Confidence 999999999955 4455 8899999999876654433 13667788888887777554443 256
Q ss_pred CCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC
Q 002071 754 KMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP 833 (973)
Q Consensus 754 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 833 (973)
.+++|+.|++++|..... .+..+++|+.|++++|.++. ++ +..+++|+.|++++|.+.. +|
T Consensus 168 ~l~~L~~L~ls~n~l~~l--------------~l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITEL--------------DVSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp TCTTCCEEECCSSCCCCC--------------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC-
T ss_pred cCCcCCEEECCCCcccee--------------ccccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcccc-cC-
Confidence 789999999999876432 15677899999999999887 53 7789999999999998766 67
Q ss_pred CCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccc---cccCCCccCcccccceeeeccCccC
Q 002071 834 LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDY---GITGMGSTSIMPCLSYLAIISCPKL 910 (973)
Q Consensus 834 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~---~~~~~~~~~~~p~L~~L~i~~c~~l 910 (973)
++.+++|+.|+++++ .+.+.....|++|+.|.+... +++.+.. ...+..+.+.+++|+.|++++|+.+
T Consensus 229 ~~~l~~L~~L~l~~N--------~l~~~~~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVN--------PLTELDVSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp CTTCTTCSEEECCSS--------CCSCCCCTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTC
T ss_pred ccccCCCCEEEeeCC--------cCCCcCHHHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCCccc
Confidence 899999999999883 333334457888877765432 3333221 0111112346899999999999876
Q ss_pred CCCCC--------CCCCCCCcceEEEccCCCcc
Q 002071 911 KALPD--------HFHQMTTLKELYILGCAIPG 935 (973)
Q Consensus 911 ~~lp~--------~l~~l~~L~~L~i~~c~~l~ 935 (973)
..+|. .+.++++|++|++++|....
T Consensus 300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred ceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 65553 24567888999988887654
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=3.7e-21 Score=234.04 Aligned_cols=174 Identities=18% Similarity=0.140 Sum_probs=130.6
Q ss_pred cCcceEEEEEEccCCCCCCc-cccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-
Q 002071 543 LGEKVCHLMLSIHEGAPFPI-STCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT- 620 (973)
Q Consensus 543 ~~~~~r~lsl~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~- 620 (973)
.+..++++.+..+.....+. .+.++++|++|+++++.+. ...+..|..+++|++|+|++| .+..+|.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n-----~l~~l~~~ 91 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS------KLEPELCQKLPMLKVLNLQHN-----ELSQLSDK 91 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC------CCCTTHHHHCTTCCEEECCSS-----CCCCCCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC------ccCHHHHhcccCcCEEECCCC-----ccCccChh
Confidence 36789999999988776554 5889999999999988752 234556899999999999995 4445775
Q ss_pred cccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccC--CCcc
Q 002071 621 NVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGI--GRLT 697 (973)
Q Consensus 621 ~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~l~ 697 (973)
.++++.+|++|+|++|.+..+| ..++++++|++|++++|......|..+..+++|++|++++|......|..+ ..++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 5999999999999999999876 679999999999999998545556778899999999999986544444333 3557
Q ss_pred ccccCCeeeeCCCCCCCCCCccCcccccCCCccC
Q 002071 698 SLRTLVEFHVSGGGGVGGSNACRLESLKNLELLH 731 (973)
Q Consensus 698 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 731 (973)
+|+.|++..+.... ..+..+..+.+|+.|.
T Consensus 172 ~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 172 SLKKLELSSNQIKE----FSPGCFHAIGRLFGLF 201 (680)
T ss_dssp EESEEECTTCCCCC----BCTTGGGGSSEECEEE
T ss_pred cccEEECCCCcccc----cChhhhhhhhhhhhhh
Confidence 88888766543332 2233444444444443
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=233.70 Aligned_cols=276 Identities=16% Similarity=0.113 Sum_probs=177.9
Q ss_pred CcceEEEEEEccCCC-CC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 544 GEKVCHLMLSIHEGA-PF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~-~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
...++.+.+..+... .+ +..+.++++|++|.++++.+ ....+..|.++++|++|+|++|.+++ .+|..
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l------~~~~p~~~~~l~~L~~L~Ls~n~l~~----~~~~~ 116 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI------YFLHPDAFQGLFHLFELRLYFCGLSD----AVLKD 116 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC------CEECTTSSCSCSSCCCEECTTCCCSS----CCSTT
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC------cccCHhHccCCcccCEeeCcCCCCCc----ccccC
Confidence 456788888877432 22 56788999999999999875 22344558899999999999966543 24444
Q ss_pred --ccCCCCCcEEEecCCCcccc--chhhhccccccEEecCCCCCCcccCccccCC--CCcceeecCCCCCCCcccccCCC
Q 002071 622 --VKRLVHLRYLNLSHQSIEKL--PETLCELYNLQKLDVSDCYGLKELPQGIGKL--VNMKHLLDDKTDSLGHMPVGIGR 695 (973)
Q Consensus 622 --i~~L~~L~~L~Ls~~~i~~L--p~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L--~~L~~L~l~~~~~~~~~p~~i~~ 695 (973)
++++++|++|+|++|.+..+ +..++++++|++|+|++|......|..+..+ ++|+.|++++|......|..++.
T Consensus 117 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 196 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196 (844)
T ss_dssp CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh
Confidence 88999999999999998865 3579999999999999998545567777776 78999999988777777776666
Q ss_pred ccc------cccCCeeeeCCCCCCCCCCc--------------------------------cCccc--ccCCCccCceee
Q 002071 696 LTS------LRTLVEFHVSGGGGVGGSNA--------------------------------CRLES--LKNLELLHVCGI 735 (973)
Q Consensus 696 l~~------L~~L~~~~~~~~~~~~~~~~--------------------------------~~l~~--l~~L~~L~~~~~ 735 (973)
+++ |+.|++..+........... ..+.. ..+|+.|++.++
T Consensus 197 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n 276 (844)
T 3j0a_A 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276 (844)
T ss_dssp SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC
T ss_pred cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC
Confidence 655 77777655432211110000 00111 134444444443
Q ss_pred eccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCcccccc
Q 002071 736 RRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLT 815 (973)
Q Consensus 736 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~ 815 (973)
......+ ..+..+++|+.|+|+.|..... ....+..+++|+.|++++|.+....|.++..++
T Consensus 277 ~l~~~~~-------~~~~~l~~L~~L~L~~n~i~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 277 FVFSLNS-------RVFETLKDLKVLNLAYNKINKI-----------ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp CCCEECS-------CCSSSCCCCCEEEEESCCCCEE-----------CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred cccccCh-------hhhhcCCCCCEEECCCCcCCCC-----------ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 3221111 1355667777777777654321 112345566677777777766653456666667
Q ss_pred CccEEEEecCCCCCcCCC-CCCcCcccceeccc
Q 002071 816 NLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 816 ~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 847 (973)
+|+.|++++|.+....+. ++.+++|+.|+|++
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 777777776654332222 55666666666654
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=232.36 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=98.2
Q ss_pred CcceEEEEEEccCCCCC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-c
Q 002071 544 GEKVCHLMLSIHEGAPF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT-N 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~-~ 621 (973)
...++++.+..+..... +..+.++++|++|.+.++.+ ...++..|..+++|++|++++|.+ ..+|. .
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l-----~~l~~~~ 119 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI------QSLALGAFSGLSSLQKLVAVETNL-----ASLENFP 119 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC------CEECTTTTTTCTTCCEEECTTSCC-----CCSTTCS
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC------CccCHhhhcCcccccccccccccc-----ccCCCcc
Confidence 45688888887766553 44578899999999998865 223444578899999999999544 44543 5
Q ss_pred ccCCCCCcEEEecCCCccc--cchhhhccccccEEecCCCCCCccc-CccccCCCCc----ceeecCCCCC
Q 002071 622 VKRLVHLRYLNLSHQSIEK--LPETLCELYNLQKLDVSDCYGLKEL-PQGIGKLVNM----KHLLDDKTDS 685 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~--Lp~~i~~L~~Lq~L~L~~~~~~~~l-p~~i~~L~~L----~~L~l~~~~~ 685 (973)
++++.+|++|++++|.+.. +|..++++++|++|++++|. +..+ |..+..+++| ++|++++|..
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCc
Confidence 8899999999999998874 68889999999999999987 4444 4566667676 6777777644
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=5.2e-21 Score=212.23 Aligned_cols=286 Identities=20% Similarity=0.242 Sum_probs=219.5
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLV 673 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~ 673 (973)
+..++.|+.|++++ +.+..+| .+..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+..++
T Consensus 40 ~~~l~~L~~L~l~~-----~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAG-----EKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECCS-----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCT
T ss_pred chhcccccEEEEeC-----Cccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCC
Confidence 45788999999999 4455565 48899999999999999999987 9999999999999997 77776 589999
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhcc
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELD 753 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~ 753 (973)
+|++|++++|.. ..+|. +..+++|++|++..+..... ...+..+++|+.|++.++.... ++ .+.
T Consensus 111 ~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~-~~--------~~~ 174 (347)
T 4fmz_A 111 NLRELYLNEDNI-SDISP-LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKD-VT--------PIA 174 (347)
T ss_dssp TCSEEECTTSCC-CCCGG-GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCC-CG--------GGG
T ss_pred cCCEEECcCCcc-cCchh-hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCC-ch--------hhc
Confidence 999999999954 45555 88899999988765533221 2236677777777776664322 11 266
Q ss_pred CCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC
Q 002071 754 KMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP 833 (973)
Q Consensus 754 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 833 (973)
.+++|+.|++++|..... ..+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.... ++.
T Consensus 175 ~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~-~~~ 238 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDI-------------SPLASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKITD-LSP 238 (347)
T ss_dssp GCTTCSEEECTTSCCCCC-------------GGGGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG
T ss_pred cCCCCCEEEccCCccccc-------------ccccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccCC-Ccc
Confidence 789999999998865432 125677899999999999887 544 7889999999999997654 455
Q ss_pred CCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCC
Q 002071 834 LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKAL 913 (973)
Q Consensus 834 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 913 (973)
+..+++|++|++.++. +..+. ....+++|+.|.+.++ .+..++ ....+++|+.|++++|+.....
T Consensus 239 ~~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L~~L~l~~n-~l~~~~-------~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQ-ISDIN------AVKDLTKLKMLNVGSN-QISDIS-------VLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCCG------GGTTCTTCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCSSCCCGGG
T ss_pred hhcCCCCCEEECCCCc-cCCCh------hHhcCCCcCEEEccCC-ccCCCh-------hhcCCCCCCEEECcCCcCCCcC
Confidence 8999999999999853 33221 1236899999999887 444443 2347899999999999543344
Q ss_pred CCCCCCCCCcceEEEccCCCcc
Q 002071 914 PDHFHQMTTLKELYILGCAIPG 935 (973)
Q Consensus 914 p~~l~~l~~L~~L~i~~c~~l~ 935 (973)
|..+..+++|+.|++++|+...
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCC
T ss_pred hhHhhccccCCEEEccCCcccc
Confidence 5567789999999999998643
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=5.8e-21 Score=209.12 Aligned_cols=232 Identities=21% Similarity=0.304 Sum_probs=161.9
Q ss_pred hcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCc
Q 002071 596 ELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNM 675 (973)
Q Consensus 596 ~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L 675 (973)
....+++|+|++ +.+..+|..++++.+|++|+|++|.++.+|..++++++|++|+|++|. +..+|..+..+++|
T Consensus 79 ~~~~l~~L~L~~-----n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRS-----VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRL 152 (328)
T ss_dssp TSTTCCEEEEES-----SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTC
T ss_pred cccceeEEEccC-----CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCC
Confidence 458899999999 455578999999999999999999999999999999999999999997 77999999999999
Q ss_pred ceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCC
Q 002071 676 KHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKM 755 (973)
Q Consensus 676 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~ 755 (973)
++|++++|.....+|..++... . .. .+..+
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~-----------~--------~~-------------------------------~~~~l 182 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTD-----------A--------SG-------------------------------EHQGL 182 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC--------------------CC-------------------------------CEEES
T ss_pred CEEECCCCCCccccChhHhhcc-----------c--------hh-------------------------------hhccC
Confidence 9999999877666665443200 0 00 11223
Q ss_pred CCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-C
Q 002071 756 KYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-L 834 (973)
Q Consensus 756 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l 834 (973)
++|+.|++++|.... +...+..+++|+.|++++|.+.+ +|..+..+++|+.|+|++|.....+|. +
T Consensus 183 ~~L~~L~L~~n~l~~------------lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRS------------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp TTCCEEEEEEECCCC------------CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred CCCCEEECcCCCcCc------------chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh
Confidence 344444444443211 11223344566666666666655 555566666666666666665555554 5
Q ss_pred CCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCC
Q 002071 835 GKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALP 914 (973)
Q Consensus 835 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp 914 (973)
+.+++|+.|+|.+ +..+..++. ....+++|+.|+|++|+.++.+|
T Consensus 250 ~~l~~L~~L~L~~-----------------------------n~~~~~~p~------~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 250 GGRAPLKRLILKD-----------------------------CSNLLTLPL------DIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TCCCCCCEEECTT-----------------------------CTTCCBCCT------TGGGCTTCCEEECTTCTTCCCCC
T ss_pred cCCCCCCEEECCC-----------------------------CCchhhcch------hhhcCCCCCEEeCCCCCchhhcc
Confidence 5555555555554 333332222 23368899999999999999999
Q ss_pred CCCCCCCCcceEEEccC
Q 002071 915 DHFHQMTTLKELYILGC 931 (973)
Q Consensus 915 ~~l~~l~~L~~L~i~~c 931 (973)
..+.++++|+.+.+..+
T Consensus 295 ~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGGGSCTTCEEECCGG
T ss_pred HHHhhccCceEEeCCHH
Confidence 99999999999988765
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=3.8e-21 Score=227.72 Aligned_cols=352 Identities=16% Similarity=0.156 Sum_probs=208.7
Q ss_pred CcceEEEEEEccCCCCC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccc
Q 002071 544 GEKVCHLMLSIHEGAPF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNV 622 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i 622 (973)
...++++.+..+..... +..+..+++|++|+++++.+ ...++..|..+++|++|++++|.++.. ..|..+
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL------SSLSSSWFGPLSSLKYLNLMGNPYQTL---GVTSLF 119 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC------CSCCHHHHTTCTTCCEEECTTCCCSSS---CSSCSC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCcc------CccCHHHhccCCCCcEEECCCCccccc---chhhhh
Confidence 45788888888877653 35678999999999999876 334566689999999999999655421 246788
Q ss_pred cCCCCCcEEEecCCC-ccccc-hhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCccccc-CCCcccc
Q 002071 623 KRLVHLRYLNLSHQS-IEKLP-ETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVG-IGRLTSL 699 (973)
Q Consensus 623 ~~L~~L~~L~Ls~~~-i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L 699 (973)
+++.+|++|++++|. +..+| ..+.++++|++|++++|......|..+..+++|++|++++|.. ..+|.. ++.+++|
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L 198 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSV 198 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTB
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhhHhhcccc
Confidence 999999999999998 66776 5789999999999999985555788888888888888777643 333332 2345666
Q ss_pred ccCCeeeeCCCCCCCC--CC-------------------------------------------------------ccCcc
Q 002071 700 RTLVEFHVSGGGGVGG--SN-------------------------------------------------------ACRLE 722 (973)
Q Consensus 700 ~~L~~~~~~~~~~~~~--~~-------------------------------------------------------~~~l~ 722 (973)
+.|++..+........ .. ...+.
T Consensus 199 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 278 (549)
T 2z81_A 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278 (549)
T ss_dssp SEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC
T ss_pred cEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhh
Confidence 6665554433221000 00 00011
Q ss_pred cccCCCccC-----------------------------ceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCC
Q 002071 723 SLKNLELLH-----------------------------VCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGG 773 (973)
Q Consensus 723 ~l~~L~~L~-----------------------------~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 773 (973)
.+++|+.|. +.++. +..+|. ..+..+++|+.|+++.|.....
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~------~~~~~l~~L~~L~Ls~N~l~~~-- 349 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPC------SFSQHLKSLEFLDLSENLMVEE-- 349 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCH------HHHHHCTTCCEEECCSSCCCHH--
T ss_pred hhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCH------HHHhcCccccEEEccCCccccc--
Confidence 111111111 11111 001110 0113467888888887764311
Q ss_pred CCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCC---CccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccccc
Q 002071 774 RRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFP---GWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGLK 849 (973)
Q Consensus 774 ~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp---~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 849 (973)
.......+..+++|+.|++++|.+.. +| ..+..+++|+.|+|++|.+. .+|. ++.+++|++|+++++.
T Consensus 350 ------~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 350 ------YLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp ------HHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred ------cccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 00112234556677777777777665 43 23556777777777777654 3444 6667777777776643
Q ss_pred cceeeC--------------cccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCC
Q 002071 850 SVKRVA--------------NEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPD 915 (973)
Q Consensus 850 ~l~~~~--------------~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~ 915 (973)
++.++ +.+.+. ...+++|+.|++.++ ++..++. ...+++|+.|++++| .++.+|.
T Consensus 422 -l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N-~l~~ip~-------~~~l~~L~~L~Ls~N-~l~~~~~ 490 (549)
T 2z81_A 422 -IRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRN-KLKTLPD-------ASLFPVLLVMKISRN-QLKSVPD 490 (549)
T ss_dssp -CSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSS-CCSSCCC-------GGGCTTCCEEECCSS-CCCCCCT
T ss_pred -cccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCC-ccCcCCC-------cccCccCCEEecCCC-ccCCcCH
Confidence 22111 111111 124555666655554 3332221 224666777777666 3554444
Q ss_pred -CCCCCCCcceEEEccCCC
Q 002071 916 -HFHQMTTLKELYILGCAI 933 (973)
Q Consensus 916 -~l~~l~~L~~L~i~~c~~ 933 (973)
.+.++++|+.|++++|+.
T Consensus 491 ~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp TGGGGCTTCCEEECCSSCB
T ss_pred HHHhcCcccCEEEecCCCc
Confidence 355666777777777664
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=6.5e-21 Score=225.95 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=113.2
Q ss_pred EEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCC
Q 002071 548 CHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLV 626 (973)
Q Consensus 548 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~ 626 (973)
+++.+..+....+|..+. ++++.|+++++.+. .+++..|..+++|++|+|++|.++ .+ |..++.++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~------~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~ 100 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSIS------ELRMPDISFLSELRVLRLSHNRIR-----SLDFHVFLFNQ 100 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCC------CCCGGGTTTCTTCCEEECCSCCCC-----EECTTTTTTCT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCcc------ccChhhhccCCCccEEECCCCCCC-----cCCHHHhCCCC
Confidence 677777777776665443 89999999998762 234445889999999999996543 44 67899999
Q ss_pred CCcEEEecCCCccccchhhhccccccEEecCCCCCCccc--CccccCCCCcceeecCCCCCCCcccccCCCcccc--ccC
Q 002071 627 HLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKEL--PQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSL--RTL 702 (973)
Q Consensus 627 ~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L 702 (973)
+|++|+|++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++| +.|
T Consensus 101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 174 (562)
T 3a79_B 101 DLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCI 174 (562)
T ss_dssp TCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEE
T ss_pred CCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEE
Confidence 999999999999999987 89999999999998 6655 4789999999999999985533 345556666 888
Q ss_pred CeeeeCC
Q 002071 703 VEFHVSG 709 (973)
Q Consensus 703 ~~~~~~~ 709 (973)
++..+..
T Consensus 175 ~L~~n~l 181 (562)
T 3a79_B 175 LLDLVSY 181 (562)
T ss_dssp EEEESSC
T ss_pred Eeecccc
Confidence 8776654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=8.9e-21 Score=213.92 Aligned_cols=287 Identities=17% Similarity=0.184 Sum_probs=223.3
Q ss_pred hcccccEEEecccccccccccccCcc-ccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCccc-CccccCC
Q 002071 596 ELTSLRAIEVSKLFYTKSTILEIPTN-VKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKEL-PQGIGKL 672 (973)
Q Consensus 596 ~l~~Lr~L~L~~~~~~~~~~~~lp~~-i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~l-p~~i~~L 672 (973)
.+.+|++|++++ +.+..+|.. +..+++|++|+|++|.++.+| ..+.++++|++|++++|. +..+ |..+..+
T Consensus 43 ~l~~l~~l~l~~-----~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKN-----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV 116 (390)
T ss_dssp GGCCCSEEEEES-----CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred ccCCceEEEecC-----CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCC
Confidence 468999999999 556668765 588999999999999999776 489999999999999998 6665 4568999
Q ss_pred CCcceeecCCCCCCCccccc-CCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhh
Q 002071 673 VNMKHLLDDKTDSLGHMPVG-IGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLE 751 (973)
Q Consensus 673 ~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~ 751 (973)
++|++|++++|.. ..+|.. ++.+++|++|++..+.... ..+..+..+++|+.|++.++..... .
T Consensus 117 ~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----------~ 181 (390)
T 3o6n_A 117 PLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLER----IEDDTFQATTSLQNLQLSSNRLTHV----------D 181 (390)
T ss_dssp TTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCB----CCTTTTSSCTTCCEEECCSSCCSBC----------C
T ss_pred CCCCEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCc----cChhhccCCCCCCEEECCCCcCCcc----------c
Confidence 9999999999954 567766 5899999999877654432 2344577788888888877654321 2
Q ss_pred ccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcC
Q 002071 752 LDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQI 831 (973)
Q Consensus 752 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 831 (973)
+..+++|+.|++++|... .+..+++|++|++++|.+.. +|.. .+++|+.|++++|.+.. .
T Consensus 182 ~~~l~~L~~L~l~~n~l~----------------~~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~-~ 241 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTD-T 241 (390)
T ss_dssp GGGCTTCSEEECCSSCCS----------------EEECCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCC-C
T ss_pred cccccccceeeccccccc----------------ccCCCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCcc-c
Confidence 456789999999887542 34566799999999999877 6554 35799999999998754 5
Q ss_pred CCCCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCC
Q 002071 832 PPLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLK 911 (973)
Q Consensus 832 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~ 911 (973)
+.++.+++|++|+|+++. +..+... ....+++|+.|.+.++ .+..++. ....+|+|+.|++++| .++
T Consensus 242 ~~l~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNE-LEKIMYH----PFVKMQRLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEESG----GGTTCSSCCEEECCSS-CCCEEEC------SSSCCTTCCEEECCSS-CCC
T ss_pred HHHcCCCCccEEECCCCc-CCCcChh----HccccccCCEEECCCC-cCcccCc------ccCCCCCCCEEECCCC-cce
Confidence 778999999999999853 3322111 1125889999999886 4554443 2346899999999999 688
Q ss_pred CCCCCCCCCCCcceEEEccCCCccc
Q 002071 912 ALPDHFHQMTTLKELYILGCAIPGV 936 (973)
Q Consensus 912 ~lp~~l~~l~~L~~L~i~~c~~l~~ 936 (973)
.+|..+..+++|++|++++|+....
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred ecCccccccCcCCEEECCCCcccee
Confidence 8998888899999999999987544
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=9.2e-21 Score=230.52 Aligned_cols=262 Identities=16% Similarity=0.069 Sum_probs=170.4
Q ss_pred ccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEe
Q 002071 554 IHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNL 633 (973)
Q Consensus 554 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~L 633 (973)
......+|..+. +++++|+++++.+. .+++..|..+++|++|+|++|.++. ..|..++++++|++|+|
T Consensus 13 ~~~L~~ip~~~~--~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 13 HLKLTQVPDDLP--TNITVLNLTHNQLR------RLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNL 80 (680)
T ss_dssp SSCCSSCCSCSC--TTCSEEECCSSCCC------CCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEEC
T ss_pred CCCccccccccC--CCCcEEECCCCCCC------CcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEEC
Confidence 333443454332 78999999998752 2344458899999999999965543 23677899999999999
Q ss_pred cCCCccccch-hhhccccccEEecCCCCCCcccC-ccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCC
Q 002071 634 SHQSIEKLPE-TLCELYNLQKLDVSDCYGLKELP-QGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGG 711 (973)
Q Consensus 634 s~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~ 711 (973)
++|.++.+|. .++++++|++|++++|. +..+| ..+.++++|++|++++|......|..++++++|++|++..+....
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 9999999986 59999999999999998 66665 678999999999999997766667778999999999876654332
Q ss_pred CCCCCCccCcc--cccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCC
Q 002071 712 GVGGSNACRLE--SLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQP 789 (973)
Q Consensus 712 ~~~~~~~~~l~--~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~ 789 (973)
..+..+. .+++|+.|++.++...+..+. .+..+.+|+.|.+..+.... .....+...+ .
T Consensus 160 ----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~l~~~~l~~-------~~~~~~~~~l-~ 220 (680)
T 1ziw_A 160 ----LKSEELDIFANSSLKKLELSSNQIKEFSPG-------CFHAIGRLFGLFLNNVQLGP-------SLTEKLCLEL-A 220 (680)
T ss_dssp ----BCHHHHGGGTTCEESEEECTTCCCCCBCTT-------GGGGSSEECEEECTTCCCHH-------HHHHHHHHHH-T
T ss_pred ----cCHHHhhccccccccEEECCCCcccccChh-------hhhhhhhhhhhhccccccCh-------hhHHHHHHHh-h
Confidence 1122222 346788887776654332222 33445556666554443210 0011111111 2
Q ss_pred CCCccEEEEeeecCCCCCCCccccccC--ccEEEEecCCCCCcCCC-CCCcCcccceeccc
Q 002071 790 PLNLKELLIGLYRGNTVFPGWMMPLTN--LRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 790 ~~~L~~L~L~~~~~~~~lp~~~~~l~~--L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 847 (973)
.++|+.|++++|.+.+..|.++..++. |+.|+|++|......|. ++.+++|+.|+|.+
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 355666666666555534555554433 66666666654433332 55666666666655
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=2.4e-21 Score=223.68 Aligned_cols=334 Identities=15% Similarity=0.069 Sum_probs=230.1
Q ss_pred CcceEEEEEEccCCCC--CCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 544 GEKVCHLMLSIHEGAP--FPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
...++.+.+..+.... .+..+..+++|++|+++++.+ ....+..|..+++|++|++++|.+++ ..|..
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~ 122 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF------LQLETGAFNGLANLEVLTLTQCNLDG----AVLSG 122 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT------CEECTTTTTTCTTCCEEECTTSCCBT----HHHHS
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCcc------CccChhhccCcccCCEEeCCCCCCCc----cccCc
Confidence 4578889888876542 245678899999999999875 22334458899999999999965543 23333
Q ss_pred --ccCCCCCcEEEecCCCcccc-chh-hhccccccEEecCCCCCCcccCccccCC--CCcceeecCCCCCCCccccc---
Q 002071 622 --VKRLVHLRYLNLSHQSIEKL-PET-LCELYNLQKLDVSDCYGLKELPQGIGKL--VNMKHLLDDKTDSLGHMPVG--- 692 (973)
Q Consensus 622 --i~~L~~L~~L~Ls~~~i~~L-p~~-i~~L~~Lq~L~L~~~~~~~~lp~~i~~L--~~L~~L~l~~~~~~~~~p~~--- 692 (973)
++.+.+|++|+|++|.+..+ |.. +.++++|++|++++|......|..+..+ .+|++|++++|......+..
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 202 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202 (455)
T ss_dssp STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH
T ss_pred ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc
Confidence 88999999999999999876 555 8999999999999998444556667665 78999999998654322222
Q ss_pred -----CCCccccccCCeeeeCCCCCCCCCCccCcccc---cCCCccCceeeeccCCC------CChhhhhhhhccCCCCC
Q 002071 693 -----IGRLTSLRTLVEFHVSGGGGVGGSNACRLESL---KNLELLHVCGIRRLGNV------TDVGEAKRLELDKMKYL 758 (973)
Q Consensus 693 -----i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~~~~~~~l~~~------~~~~~~~~~~l~~~~~L 758 (973)
+..+++|++|++..+.... ..+..+... .+|+.|.+.++...... ........ .-...++|
T Consensus 203 ~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L 277 (455)
T 3v47_A 203 EKCGNPFKNTSITTLDLSGNGFKE----SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF-KGLEASGV 277 (455)
T ss_dssp HHHCCTTTTCEEEEEECTTSCCCH----HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT-GGGTTSCC
T ss_pred cccccccccceeeeEecCCCcccc----cchhhhhccccccceeeEeeccccccccccchhhhccCccccc-ccccccCc
Confidence 3466788888765543322 112223222 55555555544322211 00000000 01124689
Q ss_pred CcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCc
Q 002071 759 SCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKL 837 (973)
Q Consensus 759 ~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l 837 (973)
+.|+++.|..... ....+..+++|+.|++++|.+....|.++..+++|+.|+|++|.+....|. ++.+
T Consensus 278 ~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 278 KTCDLSKSKIFAL-----------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp CEEECCSSCCCEE-----------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred eEEEecCcccccc-----------chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 9999998865432 233567789999999999999885577899999999999999987654444 7899
Q ss_pred CcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCC
Q 002071 838 SSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALP 914 (973)
Q Consensus 838 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp 914 (973)
++|++|+|+++. +..+... ....+++|+.|++.++ ++..++. .....+++|+.|+|++|+.-...|
T Consensus 347 ~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 347 DKLEVLDLSYNH-IRALGDQ----SFLGLPNLKELALDTN-QLKSVPD-----GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSC-CCEECTT----TTTTCTTCCEEECCSS-CCSCCCT-----TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCEEECCCCc-ccccChh----hccccccccEEECCCC-ccccCCH-----hHhccCCcccEEEccCCCcccCCC
Confidence 999999999853 3333221 1136899999999886 4544332 123468999999999997544554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2e-20 Score=222.87 Aligned_cols=288 Identities=17% Similarity=0.195 Sum_probs=223.3
Q ss_pred hcccccEEEecccccccccccccCcc-ccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCc-cccCC
Q 002071 596 ELTSLRAIEVSKLFYTKSTILEIPTN-VKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQ-GIGKL 672 (973)
Q Consensus 596 ~l~~Lr~L~L~~~~~~~~~~~~lp~~-i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L 672 (973)
.+.++++|++++ +.+..+|.. +..+++|++|+|++|.++.+| ..++.+++|++|+|++|. +..+|. .++.+
T Consensus 49 ~l~~l~~l~l~~-----~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKN-----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESS-----CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cCCCceEEEeeC-----CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCC
Confidence 367899999999 455567765 678999999999999999776 489999999999999998 666654 57899
Q ss_pred CCcceeecCCCCCCCccccc-CCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhh
Q 002071 673 VNMKHLLDDKTDSLGHMPVG-IGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLE 751 (973)
Q Consensus 673 ~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~ 751 (973)
++|++|++++|.. ..+|.. ++.+++|++|++..+.... ..+..+..+++|+.|++.++.... + .
T Consensus 123 ~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~-~---------~ 187 (597)
T 3oja_B 123 PLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLER----IEDDTFQATTSLQNLQLSSNRLTH-V---------D 187 (597)
T ss_dssp TTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCB----CCTTTTTTCTTCCEEECTTSCCSB-C---------C
T ss_pred CCCCEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCC----CChhhhhcCCcCcEEECcCCCCCC-c---------C
Confidence 9999999999955 566665 5899999999877654433 335567788888888887775432 1 2
Q ss_pred ccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcC
Q 002071 752 LDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQI 831 (973)
Q Consensus 752 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 831 (973)
+..+++|+.|++++|... .+..+++|+.|++++|.+.. +|..+ .++|+.|+|++|.+.. .
T Consensus 188 ~~~l~~L~~L~l~~n~l~----------------~l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~-~ 247 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD-T 247 (597)
T ss_dssp GGGCTTCSEEECCSSCCS----------------EEECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC-C
T ss_pred hhhhhhhhhhhcccCccc----------------cccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC-C
Confidence 455789999999887542 35567899999999999876 55443 4689999999998765 5
Q ss_pred CCCCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCC
Q 002071 832 PPLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLK 911 (973)
Q Consensus 832 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~ 911 (973)
+.++.+++|+.|+|+++. +..+... ....+++|+.|.+.++ .+..++. ....+|+|+.|++++| .+.
T Consensus 248 ~~l~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~Ls~N-~l~~l~~------~~~~l~~L~~L~Ls~N-~l~ 314 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNE-LEKIMYH----PFVKMQRLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN-HLL 314 (597)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEESG----GGTTCSSCCEEECTTS-CCCEEEC------SSSCCTTCCEEECCSS-CCC
T ss_pred hhhccCCCCCEEECCCCc-cCCCCHH----HhcCccCCCEEECCCC-CCCCCCc------ccccCCCCcEEECCCC-CCC
Confidence 678999999999999854 3222111 1136899999999886 4554443 2346899999999999 577
Q ss_pred CCCCCCCCCCCcceEEEccCCCcccc
Q 002071 912 ALPDHFHQMTTLKELYILGCAIPGVR 937 (973)
Q Consensus 912 ~lp~~l~~l~~L~~L~i~~c~~l~~~ 937 (973)
.+|..+..+++|+.|++++|+.....
T Consensus 315 ~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 315 HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred ccCcccccCCCCCEEECCCCCCCCcC
Confidence 89988888999999999999875443
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=216.51 Aligned_cols=298 Identities=17% Similarity=0.135 Sum_probs=222.0
Q ss_pred cCcceEEEEEEccCCCCC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-
Q 002071 543 LGEKVCHLMLSIHEGAPF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT- 620 (973)
Q Consensus 543 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~- 620 (973)
.+..++.+.+..+.+... +..+..+++|++|.+.++.+ ..+.+..|..+++|++|+|++|. +..+|.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~ 98 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV------SAVEPGAFNNLFNLRTLGLRSNR-----LKLIPLG 98 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECCSSC-----CCSCCTT
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc------CEeChhhhhCCccCCEEECCCCc-----CCccCcc
Confidence 367889999998887664 45788999999999999865 22334458899999999999954 445665
Q ss_pred cccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCcccc
Q 002071 621 NVKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSL 699 (973)
Q Consensus 621 ~i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 699 (973)
.+.++.+|++|+|++|.+..+ |..+.++++|++|++++|......|..+..+++|++|++++|......+..+..+++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 478999999999999998865 6679999999999999998434446688999999999999996544333458889999
Q ss_pred ccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcch
Q 002071 700 RTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEED 779 (973)
Q Consensus 700 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 779 (973)
+.|++..+.... ..+..+..+++|+.|++.++...+.++. ......+|+.|++++|.....
T Consensus 179 ~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------~~~~~~~L~~L~l~~n~l~~~-------- 239 (477)
T 2id5_A 179 IVLRLRHLNINA----IRDYSFKRLYRLKVLEISHWPYLDTMTP-------NCLYGLNLTSLSITHCNLTAV-------- 239 (477)
T ss_dssp CEEEEESCCCCE----ECTTCSCSCTTCCEEEEECCTTCCEECT-------TTTTTCCCSEEEEESSCCCSC--------
T ss_pred cEEeCCCCcCcE----eChhhcccCcccceeeCCCCccccccCc-------ccccCccccEEECcCCccccc--------
Confidence 999877655433 2234567778888888877665554433 223345899999998865432
Q ss_pred HHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccccccceeeCccc
Q 002071 780 DQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGLKSVKRVANEF 858 (973)
Q Consensus 780 ~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~ 858 (973)
....+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+....|. +..+++|+.|+|+++ .++.+....
T Consensus 240 ---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 315 (477)
T 2id5_A 240 ---PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV 315 (477)
T ss_dssp ---CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred ---CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhH
Confidence 112456778999999999988874456678899999999999987665454 788999999999884 233333221
Q ss_pred ccccCCCCCcccEeeccccc
Q 002071 859 LGIEIIAFPKLKSLTFYWME 878 (973)
Q Consensus 859 ~~~~~~~f~~L~~L~l~~~~ 878 (973)
. ..+++|+.|.+.+.+
T Consensus 316 ~----~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 316 F----HSVGNLETLILDSNP 331 (477)
T ss_dssp B----SCGGGCCEEECCSSC
T ss_pred c----CCCcccCEEEccCCC
Confidence 1 256788888887653
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.2e-21 Score=208.97 Aligned_cols=250 Identities=20% Similarity=0.229 Sum_probs=159.8
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecc-cccccccccccCccccCCCCCcEEEecCCCcc-ccchhh
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSK-LFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE-KLPETL 645 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~-~Lp~~i 645 (973)
.+++.|.+.++.+... .. .+..+..+++|++|++++ |.+.+ .+|..++++++|++|+|++|.++ .+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~---~~-~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP---YP-IPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSC---EE-CCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCCccCC---cc-cChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence 3566666665543110 01 122356667777777763 43322 35666677777777777777766 666667
Q ss_pred hccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCcc-ccccCCeeeeCCCCCCCCCCccCcccc
Q 002071 646 CELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLT-SLRTLVEFHVSGGGGVGGSNACRLESL 724 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~l~~l 724 (973)
.++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|++..+... +..+..+..+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~----~~~~~~~~~l 197 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT----GKIPPTFANL 197 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE----EECCGGGGGC
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee----ccCChHHhCC
Confidence 7777777777777663335666666777777777776655445666666666 6666655443222 1123344444
Q ss_pred cCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCC
Q 002071 725 KNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGN 804 (973)
Q Consensus 725 ~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~ 804 (973)
. |+.|++.++...+..+. .+..+++|+.|++++|..... ...+..+++|++|++++|.+.
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~~------------~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASV-------LFGSDKNTQKIHLAKNSLAFD------------LGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp C-CSEEECCSSEEEECCGG-------GCCTTSCCSEEECCSSEECCB------------GGGCCCCTTCCEEECCSSCCE
T ss_pred c-ccEEECcCCcccCcCCH-------HHhcCCCCCEEECCCCceeee------------cCcccccCCCCEEECcCCccc
Confidence 4 66666666554333222 456778888888887754321 123556788999999998888
Q ss_pred CCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceeccccc
Q 002071 805 TVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWGLK 849 (973)
Q Consensus 805 ~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 849 (973)
+.+|.++..+++|+.|+|++|.+...+|..+++++|+.|++.+.+
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 558888888999999999999887778888888888888887743
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=4e-20 Score=202.45 Aligned_cols=221 Identities=20% Similarity=0.293 Sum_probs=152.7
Q ss_pred CCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhh
Q 002071 567 IKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLC 646 (973)
Q Consensus 567 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~ 646 (973)
.++++.|.+.++.+. .++.. +..+++|++|+|++| .+..+|..++++.+|++|+|++|.++.+|..++
T Consensus 80 ~~~l~~L~L~~n~l~------~lp~~-l~~l~~L~~L~L~~n-----~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 80 QPGRVALELRSVPLP------QFPDQ-AFRLSHLQHMTIDAA-----GLMELPDTMQQFAGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp STTCCEEEEESSCCS------SCCSC-GGGGTTCSEEEEESS-----CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred ccceeEEEccCCCch------hcChh-hhhCCCCCEEECCCC-----CccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence 356777777776542 22222 556889999999984 444688889999999999999999999999999
Q ss_pred ccccccEEecCCCCCCcccCccccC---------CCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCC
Q 002071 647 ELYNLQKLDVSDCYGLKELPQGIGK---------LVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSN 717 (973)
Q Consensus 647 ~L~~Lq~L~L~~~~~~~~lp~~i~~---------L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~ 717 (973)
++++|++|++++|..+..+|..+.. +++|++|++++|.. ..+|..++.+++|++|++..+.... .
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~-----l 221 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-----L 221 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCC-----C
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCc-----C
Confidence 9999999999998878888887664 88888888888744 4677777777777777655443321 1
Q ss_pred ccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEE
Q 002071 718 ACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELL 797 (973)
Q Consensus 718 ~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~ 797 (973)
+..+..+ ++|+.|++++|..... +...+..+++|+.|+
T Consensus 222 ~~~l~~l-------------------------------~~L~~L~Ls~n~~~~~-----------~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 222 GPAIHHL-------------------------------PKLEELDLRGCTALRN-----------YPPIFGGRAPLKRLI 259 (328)
T ss_dssp CGGGGGC-------------------------------TTCCEEECTTCTTCCB-----------CCCCTTCCCCCCEEE
T ss_pred chhhccC-------------------------------CCCCEEECcCCcchhh-----------hHHHhcCCCCCCEEE
Confidence 2223333 3444444443322111 112344566777777
Q ss_pred EeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccc
Q 002071 798 IGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 798 L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 847 (973)
|++|...+.+|.++..+++|+.|+|++|...+.+|. ++++++|+.+.+..
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 777766666777777888888888888877777776 77777777777753
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=4.4e-19 Score=195.22 Aligned_cols=273 Identities=19% Similarity=0.203 Sum_probs=162.3
Q ss_pred ccccEEEeccccccccccccc-CccccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccCccccCCCCc
Q 002071 598 TSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELPQGIGKLVNM 675 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L 675 (973)
+.|++|++++|. +..+ |..+.++++|++|+|++|.++.+ |..+.++++|++|++++|. +..+|..+. ++|
T Consensus 54 ~~l~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNND-----ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSL 125 (332)
T ss_dssp TTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTC
T ss_pred CCCeEEECCCCc-----CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccC
Confidence 467777777743 3334 34677777777777777777755 5667777777777777776 666666554 677
Q ss_pred ceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCC
Q 002071 676 KHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKM 755 (973)
Q Consensus 676 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~ 755 (973)
++|++++|......+..++.+++|++|++..+.... .+..+..+..+ +|+.|++.++... .++. .+ .
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~-------~~--~ 192 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN--SGFEPGAFDGL-KLNYLRISEAKLT-GIPK-------DL--P 192 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG--GGSCTTSSCSC-CCSCCBCCSSBCS-SCCS-------SS--C
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCcccc--CCCCcccccCC-ccCEEECcCCCCC-ccCc-------cc--c
Confidence 777777775433222346677777777655443321 00113334444 6666766665532 2332 11 2
Q ss_pred CCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-C
Q 002071 756 KYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-L 834 (973)
Q Consensus 756 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l 834 (973)
++|+.|++++|..... ....+..+++|+.|++++|.+....|.++..+++|+.|+|++|.+. .+|. +
T Consensus 193 ~~L~~L~l~~n~i~~~-----------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAI-----------ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SSCSCCBCCSSCCCCC-----------CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred CCCCEEECCCCcCCcc-----------CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 5777777777655322 1134566778888888888877734557778888888888888765 4554 7
Q ss_pred CCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccC--CC
Q 002071 835 GKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKL--KA 912 (973)
Q Consensus 835 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l--~~ 912 (973)
+.+++|+.|+|.++. ++.++ ...|..+ .....+++|+.|++.+|+.. ..
T Consensus 261 ~~l~~L~~L~l~~N~-l~~~~-------~~~~~~~---------------------~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNN-ITKVG-------VNDFCPV---------------------GFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp GGCTTCCEEECCSSC-CCBCC-------TTSSSCS---------------------SCCSSSCCBSEEECCSSSSCGGGS
T ss_pred hcCccCCEEECCCCC-CCccC-------hhHcccc---------------------ccccccccccceEeecCccccccc
Confidence 778888888887622 22211 1111110 00113567788888887643 23
Q ss_pred CCCCCCCCCCcceEEEccCC
Q 002071 913 LPDHFHQMTTLKELYILGCA 932 (973)
Q Consensus 913 lp~~l~~l~~L~~L~i~~c~ 932 (973)
.|..+..+++|+.+++.+|.
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 34456677888888887774
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=6.1e-19 Score=193.92 Aligned_cols=293 Identities=17% Similarity=0.182 Sum_probs=155.6
Q ss_pred CceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-cccCCCCCcEEEecCCCcccc-chhhh
Q 002071 569 RMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQSIEKL-PETLC 646 (973)
Q Consensus 569 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~i~~L-p~~i~ 646 (973)
+++.+.+.++.+. .++.. -.+.|++|++++|.+ ..+|. .++++++|++|+|++|.++.+ |..+.
T Consensus 32 ~l~~l~~~~~~l~------~lp~~---~~~~l~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLGLE------KVPKD---LPPDTALLDLQNNKI-----TEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSCCC------SCCCS---CCTTCCEEECCSSCC-----CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CCeEEEecCCCcc------ccCcc---CCCCCeEEECCCCcC-----CEeChhhhccCCCCCEEECCCCcCCeeCHHHhc
Confidence 6777777766542 11111 125788888888443 34543 677888888888888888766 67788
Q ss_pred ccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccC
Q 002071 647 ELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKN 726 (973)
Q Consensus 647 ~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 726 (973)
++++|++|++++|. +..+|..+. ++|++|++++|......+..++.+++|++|++..+.... .+..+..+..+++
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~ 172 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKK 172 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG--GGBCTTGGGGCTT
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc--cCcChhhccCCCC
Confidence 88888888888886 777777654 678888888875544334446777777777655443221 0011233444555
Q ss_pred CCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCC
Q 002071 727 LELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTV 806 (973)
Q Consensus 727 L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~ 806 (973)
|+.|++.++... .++. .+ .++|+.|++++|..... ....+..+++|+.|++++|.+...
T Consensus 173 L~~L~l~~n~l~-~l~~-------~~--~~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 173 LSYIRIADTNIT-TIPQ-------GL--PPSLTELHLDGNKITKV-----------DAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CCEEECCSSCCC-SCCS-------SC--CTTCSEEECTTSCCCEE-----------CTGGGTTCTTCCEEECCSSCCCEE
T ss_pred cCEEECCCCccc-cCCc-------cc--cccCCEEECCCCcCCcc-----------CHHHhcCCCCCCEEECCCCcCcee
Confidence 555554444321 1221 01 14555555554433211 012334445555555555555442
Q ss_pred CCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccc
Q 002071 807 FPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDY 885 (973)
Q Consensus 807 lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 885 (973)
.|.++..+++|+.|+|++|.+. .+|. +..+++|++|+|.++. ++ ..+...|..
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-i~-------~~~~~~f~~----------------- 285 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-IS-------AIGSNDFCP----------------- 285 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC-CC-------CCCTTSSSC-----------------
T ss_pred ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc-CC-------ccChhhcCC-----------------
Confidence 2334455555555555555443 2332 4455555555554421 11 111111100
Q ss_pred cccCCCccCcccccceeeeccCccCC--CCCCCCCCCCCcceEEEccC
Q 002071 886 GITGMGSTSIMPCLSYLAIISCPKLK--ALPDHFHQMTTLKELYILGC 931 (973)
Q Consensus 886 ~~~~~~~~~~~p~L~~L~i~~c~~l~--~lp~~l~~l~~L~~L~i~~c 931 (973)
.......++|+.|++.++|... ..|..+..+++|+.+++++|
T Consensus 286 ----~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 286 ----PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ----SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ----cccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 0011134667777777776432 23345566777888887776
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=8.4e-19 Score=192.82 Aligned_cols=242 Identities=17% Similarity=0.119 Sum_probs=181.4
Q ss_pred ceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccC
Q 002071 546 KVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKR 624 (973)
Q Consensus 546 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~ 624 (973)
..+.+.+.......+|..+ .++++.|.+.++.+. .+.+..|..+++|++|++++|.++ .+ |..++.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKIT------EIKDGDFKNLKNLHTLILINNKIS-----KISPGAFAP 98 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCC------CBCTTTTTTCTTCCEEECCSSCCC-----CBCTTTTTT
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCCcCC------EeChhhhccCCCCCEEECCCCcCC-----eeCHHHhcC
Confidence 3445555555555455433 368999999998762 233444788999999999995543 44 788999
Q ss_pred CCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCC--cccccCCCcccccc
Q 002071 625 LVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLG--HMPVGIGRLTSLRT 701 (973)
Q Consensus 625 L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~ 701 (973)
+++|++|+|++|.++.+|..+. ++|++|++++|. +..++. .+..+++|++|++++|.... ..|..+..+++|+.
T Consensus 99 l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 99 LVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 9999999999999999998765 799999999998 666654 58899999999999986532 45667888999999
Q ss_pred CCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHH
Q 002071 702 LVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQ 781 (973)
Q Consensus 702 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 781 (973)
|++..+.... .+..+ .++|+.|++.++...+..+ ..+..+++|+.|++++|......
T Consensus 176 L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~Ls~n~l~~~~--------- 232 (330)
T 1xku_A 176 IRIADTNITT-----IPQGL--PPSLTELHLDGNKITKVDA-------ASLKGLNNLAKLGLSFNSISAVD--------- 232 (330)
T ss_dssp EECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEECT-------GGGTTCTTCCEEECCSSCCCEEC---------
T ss_pred EECCCCcccc-----CCccc--cccCCEEECCCCcCCccCH-------HHhcCCCCCCEEECCCCcCceeC---------
Confidence 8876654433 12222 2678888777665432222 25678899999999998764321
Q ss_pred HHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCC
Q 002071 782 QLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCK 829 (973)
Q Consensus 782 ~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~ 829 (973)
...+..+++|+.|++++|.+.. +|.++..+++|+.|+|++|.+..
T Consensus 233 --~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 233 --NGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp --TTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCC
T ss_pred --hhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCc
Confidence 1245667899999999999987 99999999999999999997654
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=9.4e-19 Score=211.25 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=112.6
Q ss_pred cCcceEEEEEEccCCCCCC-ccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-
Q 002071 543 LGEKVCHLMLSIHEGAPFP-ISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT- 620 (973)
Q Consensus 543 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~- 620 (973)
.|..++++.++.+.+..++ ..+..+++|+.|+++++.+ ..+.+..|.++++|++|+|++| .+..+|.
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i------~~i~~~~f~~L~~L~~L~Ls~N-----~l~~l~~~ 118 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI------QTIEDGAYQSLSHLSTLILTGN-----PIQSLALG 118 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC------CEECTTTTTTCTTCCEEECTTC-----CCCEECGG
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC------CCcChhHhcCCCCCCEEEccCC-----cCCCCCHH
Confidence 4678999999999887654 4688999999999999875 3345556899999999999995 4455664
Q ss_pred cccCCCCCcEEEecCCCccccch-hhhccccccEEecCCCCCCc--ccCccccCCCCcceeecCCCCCCCcccccC
Q 002071 621 NVKRLVHLRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLK--ELPQGIGKLVNMKHLLDDKTDSLGHMPVGI 693 (973)
Q Consensus 621 ~i~~L~~L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 693 (973)
.+.+|.+|++|+|++|.++.+|. .|++|++|++|++++|. +. .+|..+..+++|++|++++|......|..+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccc
Confidence 57999999999999999998875 58999999999999997 54 357788899999999999986543333333
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.9e-19 Score=195.95 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=138.2
Q ss_pred ccccEEEecccccccccccccCccccCCCCCcEEEecC-CCcc-ccchhhhccccccEEecCCCCCCcccCccccCCCCc
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSH-QSIE-KLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNM 675 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~-~~i~-~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L 675 (973)
.+++.|+|++|.+++ ...+|..++++++|++|+|++ |.+. .+|..++++++|++|++++|.....+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 579999999965532 115789999999999999995 7776 789999999999999999998445889999999999
Q ss_pred ceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCC
Q 002071 676 KHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKM 755 (973)
Q Consensus 676 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~ 755 (973)
++|++++|.....+|..++.+++|++|++..+.... ..+..+..+.
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~------------------------------ 173 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG----AIPDSYGSFS------------------------------ 173 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE----ECCGGGGCCC------------------------------
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC----cCCHHHhhhh------------------------------
Confidence 999999997766788888888888888755443221 1233333333
Q ss_pred CCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCC
Q 002071 756 KYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLG 835 (973)
Q Consensus 756 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~ 835 (973)
++|+.|+++.|..... ....+..+. |+.|++++|.+....|..+..+++|+.|+|++|.+...+|.++
T Consensus 174 ~~L~~L~L~~N~l~~~-----------~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 241 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGK-----------IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241 (313)
T ss_dssp TTCCEEECCSSEEEEE-----------CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCC
T ss_pred hcCcEEECcCCeeecc-----------CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCccc
Confidence 1344444443322100 011122222 6666666666655456666677777777777776655555566
Q ss_pred CcCcccceeccc
Q 002071 836 KLSSLEKLMIWG 847 (973)
Q Consensus 836 ~l~~L~~L~L~~ 847 (973)
.+++|++|+|++
T Consensus 242 ~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 242 LSKNLNGLDLRN 253 (313)
T ss_dssp CCTTCCEEECCS
T ss_pred ccCCCCEEECcC
Confidence 667777777765
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=8.5e-18 Score=192.23 Aligned_cols=306 Identities=19% Similarity=0.177 Sum_probs=188.8
Q ss_pred CcceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcccc
Q 002071 544 GEKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVK 623 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~ 623 (973)
+..++.+.+..+....++. ..++|+.|.++++.+.. + .. ..+.|++|++++|.+ ..+| .++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~--l-~~-------~~~~L~~L~L~~n~l-----~~lp-~~~ 150 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA--L-SD-------LPPLLEYLGVSNNQL-----EKLP-ELQ 150 (454)
T ss_dssp CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC--C-CS-------CCTTCCEEECCSSCC-----SSCC-CCT
T ss_pred cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCc--c-cC-------CCCCCCEEECcCCCC-----CCCc-ccC
Confidence 5677788887776665443 24788888888876521 1 01 125788888888544 3466 588
Q ss_pred CCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCC
Q 002071 624 RLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 624 ~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
++.+|++|++++|.++.+|..+ .+|++|++++|. +..+| .++.+++|++|++++|.. ..+|... ++|++|+
T Consensus 151 ~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSL-KKLPDLP---LSLESIV 221 (454)
T ss_dssp TCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC-SSCCCCC---TTCCEEE
T ss_pred CCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcC-CcCCCCc---CcccEEE
Confidence 8888888888888888887643 488888888886 66777 588888888888888854 3455433 4677776
Q ss_pred eeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHH
Q 002071 704 EFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQL 783 (973)
Q Consensus 704 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 783 (973)
+..+.... .+ .+..+++|+.|++.++... .++. ...+|+.|++++|......
T Consensus 222 l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~-~l~~----------~~~~L~~L~l~~N~l~~l~----------- 273 (454)
T 1jl5_A 222 AGNNILEE-----LP-ELQNLPFLTTIYADNNLLK-TLPD----------LPPSLEALNVRDNYLTDLP----------- 273 (454)
T ss_dssp CCSSCCSS-----CC-CCTTCTTCCEEECCSSCCS-SCCS----------CCTTCCEEECCSSCCSCCC-----------
T ss_pred CcCCcCCc-----cc-ccCCCCCCCEEECCCCcCC-cccc----------cccccCEEECCCCcccccC-----------
Confidence 65543332 23 3566777777777666442 2222 2367888888877553210
Q ss_pred HhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceeccccccceeeCcccccccC
Q 002071 784 LEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWGLKSVKRVANEFLGIEI 863 (973)
Q Consensus 784 l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 863 (973)
..+++|+.|++++|.+.+ +|.. .++|+.|++++|.... ++.+ .++|+.|+++++. +.+..
T Consensus 274 ----~~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~~--~~~L~~L~Ls~N~--------l~~lp- 333 (454)
T 1jl5_A 274 ----ELPQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCDL--PPSLEELNVSNNK--------LIELP- 333 (454)
T ss_dssp ----CCCTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECCC--CTTCCEEECCSSC--------CSCCC-
T ss_pred ----cccCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccCC--cCcCCEEECCCCc--------ccccc-
Confidence 113678888888887766 4432 2678888888886543 3321 1478888887732 22221
Q ss_pred CCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCC--CCCCCCCCC-------------CCcceEEE
Q 002071 864 IAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLK--ALPDHFHQM-------------TTLKELYI 928 (973)
Q Consensus 864 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~--~lp~~l~~l-------------~~L~~L~i 928 (973)
..+++|+.|++.++ .+..++. .+++|+.|++++|+... .+|..+.++ ++|+.|++
T Consensus 334 ~~~~~L~~L~L~~N-~l~~lp~---------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 334 ALPPRLERLIASFN-HLAEVPE---------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp CCCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred ccCCcCCEEECCCC-ccccccc---------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence 24688888888776 3443221 47889999998885433 466666666 78899999
Q ss_pred ccCCCcc
Q 002071 929 LGCAIPG 935 (973)
Q Consensus 929 ~~c~~l~ 935 (973)
++|+..+
T Consensus 404 s~N~l~~ 410 (454)
T 1jl5_A 404 ETNPLRE 410 (454)
T ss_dssp -------
T ss_pred CCCcCCc
Confidence 9887643
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.1e-17 Score=197.17 Aligned_cols=260 Identities=18% Similarity=0.189 Sum_probs=178.1
Q ss_pred ccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcce
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKH 677 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~ 677 (973)
..+++|++++ +.+..+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++
T Consensus 40 ~~l~~L~ls~-----n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGE-----SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLE 105 (622)
T ss_dssp HCCCEEECCS-----SCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCE
T ss_pred CCCcEEEecC-----CCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCE
Confidence 3577777777 34445666554 677777777777777776 56777777777776 666766 5677777
Q ss_pred eecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCC
Q 002071 678 LLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKY 757 (973)
Q Consensus 678 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~ 757 (973)
|++++|. +..+|. .+++|+.|++..+.... ++. .+++|+.|++.+|.. ..++. ...+
T Consensus 106 L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l-~~l~~----------~~~~ 162 (622)
T 3g06_A 106 LSIFSNP-LTHLPA---LPSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQL-ASLPA----------LPSE 162 (622)
T ss_dssp EEECSCC-CCCCCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCC-SCCCC----------CCTT
T ss_pred EECcCCc-CCCCCC---CCCCcCEEECCCCCCCc-----CCC---CCCCCCEEECcCCcC-CCcCC----------ccCC
Confidence 7777773 344554 45566666554443322 121 236666776666543 22221 2467
Q ss_pred CCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCc
Q 002071 758 LSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKL 837 (973)
Q Consensus 758 L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 837 (973)
|+.|+++.|..... . ..+++|+.|++++|.+.. +|.. +++|+.|++++|.+. .+|. .+
T Consensus 163 L~~L~L~~N~l~~l------------~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~--~~ 220 (622)
T 3g06_A 163 LCKLWAYNNQLTSL------------P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA--LP 220 (622)
T ss_dssp CCEEECCSSCCSCC------------C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CC
T ss_pred CCEEECCCCCCCCC------------c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC--CC
Confidence 88888887765322 0 345789999999998887 7764 478999999998764 4554 35
Q ss_pred CcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCC
Q 002071 838 SSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHF 917 (973)
Q Consensus 838 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l 917 (973)
++|+.|+|+++ .++. .. ..+++|+.|++.++ .+..++. .+++|+.|++++| .++.+|..+
T Consensus 221 ~~L~~L~Ls~N-~L~~-------lp-~~l~~L~~L~Ls~N-~L~~lp~---------~~~~L~~L~Ls~N-~L~~lp~~l 280 (622)
T 3g06_A 221 SGLKELIVSGN-RLTS-------LP-VLPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRN-QLTRLPESL 280 (622)
T ss_dssp TTCCEEECCSS-CCSC-------CC-CCCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCCSCCGGG
T ss_pred CCCCEEEccCC-ccCc-------CC-CCCCcCcEEECCCC-CCCcCCc---------ccccCcEEeCCCC-CCCcCCHHH
Confidence 88999999874 2322 22 36789999999886 4554332 6789999999999 688999989
Q ss_pred CCCCCcceEEEccCCCccc
Q 002071 918 HQMTTLKELYILGCAIPGV 936 (973)
Q Consensus 918 ~~l~~L~~L~i~~c~~l~~ 936 (973)
.++++|+.|++++|+..+.
T Consensus 281 ~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp GGSCTTCEEECCSCCCCHH
T ss_pred hhccccCEEEecCCCCCCc
Confidence 9999999999999987544
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=2.8e-17 Score=187.89 Aligned_cols=300 Identities=19% Similarity=0.142 Sum_probs=218.9
Q ss_pred ceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCC
Q 002071 546 KVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRL 625 (973)
Q Consensus 546 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L 625 (973)
.++++.+..+....++. -.++|+.|+++++.+.. + + ..++.|++|++++|.++ .+|.. .
T Consensus 72 ~l~~L~l~~~~l~~lp~---~~~~L~~L~l~~n~l~~--l----p----~~~~~L~~L~l~~n~l~-----~l~~~---~ 130 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTE--L----P----ELPQSLKSLLVDNNNLK-----ALSDL---P 130 (454)
T ss_dssp TCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCSS--C----C----CCCTTCCEEECCSSCCS-----CCCSC---C
T ss_pred CCCEEEecCCccccCCC---CcCCCCEEEccCCcCCc--c----c----cccCCCcEEECCCCccC-----cccCC---C
Confidence 34566666666554443 24789999999887532 1 1 12478999999996553 34432 2
Q ss_pred CCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCee
Q 002071 626 VHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEF 705 (973)
Q Consensus 626 ~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 705 (973)
.+|++|++++|.++.+| .++++++|++|++++|. +..+|..+ .+|++|++++|.. ..+| .++.+++|+.|++.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQL-EELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCcC-CcCc-cccCCCCCCEEECC
Confidence 68999999999999999 59999999999999997 77788654 5899999999954 4577 68999999999876
Q ss_pred eeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHh
Q 002071 706 HVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLE 785 (973)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~ 785 (973)
.+.... .+. ...+|+.|++.++... .++ .+..+++|+.|++++|......
T Consensus 204 ~N~l~~-----l~~---~~~~L~~L~l~~n~l~-~lp--------~~~~l~~L~~L~l~~N~l~~l~------------- 253 (454)
T 1jl5_A 204 NNSLKK-----LPD---LPLSLESIVAGNNILE-ELP--------ELQNLPFLTTIYADNNLLKTLP------------- 253 (454)
T ss_dssp SSCCSS-----CCC---CCTTCCEEECCSSCCS-SCC--------CCTTCTTCCEEECCSSCCSSCC-------------
T ss_pred CCcCCc-----CCC---CcCcccEEECcCCcCC-ccc--------ccCCCCCCCEEECCCCcCCccc-------------
Confidence 654332 121 1247788887777543 444 2567899999999988654210
Q ss_pred hcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceeccccccceeeCcccccccCCC
Q 002071 786 ALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIA 865 (973)
Q Consensus 786 ~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 865 (973)
..+++|+.|++++|.+.+ +|.+ +++|+.|++++|.+.. +|.+ .++|+.|+++++. +..++ ..
T Consensus 254 --~~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~-l~~i~--------~~ 315 (454)
T 1jl5_A 254 --DLPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL--PPNLYYLNASSNE-IRSLC--------DL 315 (454)
T ss_dssp --SCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC--CTTCCEEECCSSC-CSEEC--------CC
T ss_pred --ccccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc--CCcCCEEECcCCc-CCccc--------CC
Confidence 124799999999999888 8875 4789999999997654 4432 2789999998743 22211 12
Q ss_pred CCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCcc
Q 002071 866 FPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIPG 935 (973)
Q Consensus 866 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l~ 935 (973)
.++|+.|++.++ .+..++. .+++|+.|++++| .++.+|. .+++|+.|++++|+..+
T Consensus 316 ~~~L~~L~Ls~N-~l~~lp~---------~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 316 PPSLEELNVSNN-KLIELPA---------LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSS
T ss_pred cCcCCEEECCCC-ccccccc---------cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCc
Confidence 358999999876 3443332 4799999999999 6888997 47899999999998765
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=189.63 Aligned_cols=252 Identities=17% Similarity=0.196 Sum_probs=134.0
Q ss_pred ccccEEEecccccccccccccCc-cccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCcc-ccCCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQG-IGKLVN 674 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~ 674 (973)
+.|++|++++|. +..+|. .+.++++|++|+|++|.++.++ ..+.++++|++|++++|. +..+|.. +..+++
T Consensus 52 ~~L~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNR-----ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTT
T ss_pred ccCcEEECCCCc-----CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCcc
Confidence 366777777633 333443 5666777777777777666553 456666777777777665 5555554 566667
Q ss_pred cceeecCCCCCCCcccc--cCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhc
Q 002071 675 MKHLLDDKTDSLGHMPV--GIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLEL 752 (973)
Q Consensus 675 L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l 752 (973)
|++|++++|.. ..+|. .++.+++|++|++.. +..+..++. ..+
T Consensus 126 L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~----------------------------n~~~~~~~~------~~~ 170 (353)
T 2z80_A 126 LTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGN----------------------------MDTFTKIQR------KDF 170 (353)
T ss_dssp CSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEE----------------------------SSSCCEECT------TTT
T ss_pred CCEEECCCCCC-cccCchhhhccCCCCcEEECCC----------------------------CccccccCH------HHc
Confidence 77777766633 23333 344444444443332 211111100 023
Q ss_pred cCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccc-cccCccEEEEecCCCCCcC
Q 002071 753 DKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMM-PLTNLRSLTLEKCEKCKQI 831 (973)
Q Consensus 753 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l 831 (973)
..+++|+.|++++|..... ....+..+++|++|++++|.+.. +|..+. .+++|+.|++++|.+....
T Consensus 171 ~~l~~L~~L~l~~n~l~~~-----------~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSY-----------EPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TTCCEEEEEEEEETTCCEE-----------CTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred cCCCCCCEEECCCCCcCcc-----------CHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCcccccc
Confidence 3444555555555543211 11234445566666666665544 443322 4566666666666543211
Q ss_pred CC-CCCcCcccceeccccccceeeCcccccccCCCCCcccEeeccccc----ccccccccccCCCccCcccccceeeecc
Q 002071 832 PP-LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWME----EFEEWDYGITGMGSTSIMPCLSYLAIIS 906 (973)
Q Consensus 832 ~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~----~l~~~~~~~~~~~~~~~~p~L~~L~i~~ 906 (973)
+. +.. ....+.++.+.+.++. .+..++. ....+++|+.|++++
T Consensus 239 ~~~l~~--------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~------~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 239 FSELST--------------------------GETNSLIKKFTFRNVKITDESLFQVMK------LLNQISGLLELEFSR 286 (353)
T ss_dssp CC--------------------------------CCCCCCEEEEESCBCCHHHHHHHHH------HHHTCTTCCEEECCS
T ss_pred cccccc--------------------------ccccchhhccccccccccCcchhhhHH------HHhcccCCCEEECCC
Confidence 10 000 0012333334333321 0111111 123588999999999
Q ss_pred CccCCCCCCCC-CCCCCcceEEEccCCCcc
Q 002071 907 CPKLKALPDHF-HQMTTLKELYILGCAIPG 935 (973)
Q Consensus 907 c~~l~~lp~~l-~~l~~L~~L~i~~c~~l~ 935 (973)
| .++.+|..+ .++++|++|++++|+...
T Consensus 287 N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 287 N-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 9 688999875 789999999999998654
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=1.5e-20 Score=217.34 Aligned_cols=372 Identities=14% Similarity=0.061 Sum_probs=231.0
Q ss_pred CcceEEEEEEccCCCCCC--ccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 544 GEKVCHLMLSIHEGAPFP--ISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
+..++++.+..+...... ..+..+++|++|.+.++.+.... ...++..+..+++|++|+|++|.+++.....+...
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR--CKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH--HHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHH--HHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 456788888777654322 22567889999999988652110 11345567888999999999976653222222222
Q ss_pred ccCCC-CCcEEEecCCCcc-----ccchhhhccccccEEecCCCCCCcc-cCccc-----cCCCCcceeecCCCCCCCc-
Q 002071 622 VKRLV-HLRYLNLSHQSIE-----KLPETLCELYNLQKLDVSDCYGLKE-LPQGI-----GKLVNMKHLLDDKTDSLGH- 688 (973)
Q Consensus 622 i~~L~-~L~~L~Ls~~~i~-----~Lp~~i~~L~~Lq~L~L~~~~~~~~-lp~~i-----~~L~~L~~L~l~~~~~~~~- 688 (973)
+.... +|++|+|++|.+. .+|..+.++++|++|++++|. +.. .+..+ ..+++|++|++++|.....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 22222 6999999999887 468888899999999999987 432 22222 2356799999999865432
Q ss_pred ---ccccCCCccccccCCeeeeCCCCCCCCCCccCcc-----cccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCc
Q 002071 689 ---MPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLE-----SLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSC 760 (973)
Q Consensus 689 ---~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~ 760 (973)
++..+..+++|++|++..+.... .....+. ..++|+.|++.++.... .........+..+++|+.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINE----AGVRVLCQGLKDSPCQLEALKLESCGVTS---DNCRDLCGIVASKASLRE 231 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHH----HHHHHHHHHHHHSCCCCCEEECTTSCCBT---THHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcch----HHHHHHHHHHhcCCCCceEEEccCCCCcH---HHHHHHHHHHHhCCCccE
Confidence 34456667888888766544221 0011111 13477777776664321 112233445667899999
Q ss_pred EEEEecCCCCCCCCCCcchHHHHHhhc-CCCCCccEEEEeeecCCCC----CCCccccccCccEEEEecCCCCCc----C
Q 002071 761 LRLWFDKEEEDGGRRKEEDDQQLLEAL-QPPLNLKELLIGLYRGNTV----FPGWMMPLTNLRSLTLEKCEKCKQ----I 831 (973)
Q Consensus 761 L~L~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~L~~~~~~~~----l 831 (973)
|++++|.... .....+...+ .++++|++|++++|.++.. +|..+..+++|+.|+|++|.+... +
T Consensus 232 L~Ls~n~l~~-------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 232 LALGSNKLGD-------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp EECCSSBCHH-------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred EeccCCcCCh-------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 9999886421 1112222333 3578999999999977652 455666789999999999975432 1
Q ss_pred CC--CCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccc-cccCCCccCcccccceeeeccCc
Q 002071 832 PP--LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDY-GITGMGSTSIMPCLSYLAIISCP 908 (973)
Q Consensus 832 ~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~p~L~~L~i~~c~ 908 (973)
.. ....++|++|+|.+|. +...+..........+++|+.|++.++ .+..... .+... .....++|+.|++++|.
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~-l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQG-LGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHH-HTSTTCCCCEEECTTSC
T ss_pred HHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHH-HcCCCCceEEEECCCCC
Confidence 11 1234699999999864 221110001111124689999999877 3332211 00000 00126799999999994
Q ss_pred cCC-----CCCCCCCCCCCcceEEEccCCCccc
Q 002071 909 KLK-----ALPDHFHQMTTLKELYILGCAIPGV 936 (973)
Q Consensus 909 ~l~-----~lp~~l~~l~~L~~L~i~~c~~l~~ 936 (973)
++ .+|..+..+++|++|++++|+....
T Consensus 382 -i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 382 -VSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp -CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred -CChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 55 6777777889999999999976544
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=1.9e-17 Score=199.79 Aligned_cols=129 Identities=23% Similarity=0.225 Sum_probs=107.0
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccccch-hh
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKLPE-TL 645 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~Lp~-~i 645 (973)
+.++.|+++++.+ ..+++..|..+++|++|+|++| .+..+| ..+.+|++|++|+|++|.++.+|. .|
T Consensus 52 ~~~~~LdLs~N~i------~~l~~~~f~~l~~L~~L~Ls~N-----~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTC-----CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred cCCCEEEeeCCCC------CCCCHHHHhCCCCCCEEECCCC-----cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 4799999999876 3345556899999999999995 455565 468999999999999999999885 58
Q ss_pred hccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCC-cccccCCCccccccCCeeeeC
Q 002071 646 CELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLG-HMPVGIGRLTSLRTLVEFHVS 708 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~ 708 (973)
.+|.+|++|+|++|. +..+|. .++++++|++|++++|.... ..|..++.+++|++|++..+.
T Consensus 121 ~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 121 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 999999999999997 777775 58999999999999996543 457778899999998876543
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=2.6e-18 Score=205.42 Aligned_cols=363 Identities=15% Similarity=0.105 Sum_probs=229.6
Q ss_pred ceEEEEEEccCCCC---CCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccc
Q 002071 546 KVCHLMLSIHEGAP---FPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNV 622 (973)
Q Consensus 546 ~~r~lsl~~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i 622 (973)
.++++.+..+.... +......+++|++|.+.++.+.... ..++..++..++.|++|++++|.+++.....++..+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD--GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC--SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc--hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 46666665543110 1122346789999999888653222 234566678889999999998766532333456667
Q ss_pred cCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCC---cccCccccCCCCcceeecCCCCCCCcccccCCCcccc
Q 002071 623 KRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGL---KELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSL 699 (973)
Q Consensus 623 ~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~---~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 699 (973)
.++++|++|++++|.+..+|..+.++++|++|+++++... ...+..+..+++|++|.+.++ ....+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCC
Confidence 7889999999999888888888999999999999864322 234556778888999988875 445677777888899
Q ss_pred ccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEe----------cCCC
Q 002071 700 RTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWF----------DKEE 769 (973)
Q Consensus 700 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~----------~~~~ 769 (973)
+.|++..+.... ......+..+++|+.|++.++. ...........+++|+.|+++. +...
T Consensus 296 ~~L~Ls~~~l~~---~~~~~~~~~~~~L~~L~L~~~~-------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 296 RKLDLLYALLET---EDHCTLIQKCPNLEVLETRNVI-------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp CEEEETTCCCCH---HHHHHHHTTCTTCCEEEEEGGG-------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred cEEecCCCcCCH---HHHHHHHHhCcCCCEEeccCcc-------CHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 988876554221 0011223556677766655211 1122333445678899999983 2111
Q ss_pred CCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccc-cccCccEEEEecCC---CCCcCC------C-CCCcC
Q 002071 770 EDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMM-PLTNLRSLTLEKCE---KCKQIP------P-LGKLS 838 (973)
Q Consensus 770 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~L~~~~---~~~~l~------~-l~~l~ 838 (973)
....+......+++|++|+++.+.++...+..+. .+++|+.|++++|. .....| . +..++
T Consensus 366 ---------~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~ 436 (592)
T 3ogk_B 366 ---------SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436 (592)
T ss_dssp ---------CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT
T ss_pred ---------CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC
Confidence 1122222234468999999977766542334444 48899999998532 333222 1 44589
Q ss_pred cccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCC--CCCCC
Q 002071 839 SLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLK--ALPDH 916 (973)
Q Consensus 839 ~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~--~lp~~ 916 (973)
+|+.|+|+.|.+ .+...........+++|+.|.+.++. +..... ......+++|+.|+|++|+ ++ .++..
T Consensus 437 ~L~~L~L~~~~~--~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~ 508 (592)
T 3ogk_B 437 KLRRFAFYLRQG--GLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL----MEFSRGCPNLQKLEMRGCC-FSERAIAAA 508 (592)
T ss_dssp TCCEEEEECCGG--GCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH----HHHHTCCTTCCEEEEESCC-CBHHHHHHH
T ss_pred CCCEEEEecCCC--CccHHHHHHHHHhCccceEeeccCCC-CCHHHH----HHHHhcCcccCeeeccCCC-CcHHHHHHH
Confidence 999999977653 11111111111258899999998763 332111 0112357999999999997 54 24444
Q ss_pred CCCCCCcceEEEccCCCccccc
Q 002071 917 FHQMTTLKELYILGCAIPGVRF 938 (973)
Q Consensus 917 l~~l~~L~~L~i~~c~~l~~~~ 938 (973)
+..+++|++|++++|+.....+
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCT
T ss_pred HHhcCccCeeECcCCcCCHHHH
Confidence 4578999999999998654433
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=1e-16 Score=176.21 Aligned_cols=260 Identities=17% Similarity=0.108 Sum_probs=192.7
Q ss_pred eEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCC
Q 002071 547 VCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRL 625 (973)
Q Consensus 547 ~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L 625 (973)
.+.+.+..+....+|..+ .++++.|.+.++.+ ..+.+..|..+++|++|++++|.+ ..+ |..++++
T Consensus 35 l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l 101 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDI------SELRKDDFKGLQHLYALVLVNNKI-----SKIHEKAFSPL 101 (332)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCC------CEECTTTTTTCTTCCEEECCSSCC-----CEECGGGSTTC
T ss_pred CCEEECCCCCccccCCCC--CCCCeEEECCCCcC------CccCHhHhhCCCCCcEEECCCCcc-----CccCHhHhhCc
Confidence 445555555555555443 36899999998875 233344578899999999999544 344 7789999
Q ss_pred CCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCC--CcccccCCCccccccC
Q 002071 626 VHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSL--GHMPVGIGRLTSLRTL 702 (973)
Q Consensus 626 ~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~--~~~p~~i~~l~~L~~L 702 (973)
++|++|+|++|.++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|... ...|..++.+ +|+.|
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 999999999999999998765 899999999998 677765 4789999999999998653 2456667777 89988
Q ss_pred CeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHH
Q 002071 703 VEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQ 782 (973)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 782 (973)
++..+.... .+..+ .++|+.|++.++......+. .+..+++|+.|++++|......
T Consensus 178 ~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~~~-------~l~~l~~L~~L~L~~N~l~~~~---------- 233 (332)
T 2ft3_A 178 RISEAKLTG-----IPKDL--PETLNELHLDHNKIQAIELE-------DLLRYSKLYRLGLGHNQIRMIE---------- 233 (332)
T ss_dssp BCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCCCTT-------SSTTCTTCSCCBCCSSCCCCCC----------
T ss_pred ECcCCCCCc-----cCccc--cCCCCEEECCCCcCCccCHH-------HhcCCCCCCEEECCCCcCCcCC----------
Confidence 876655443 22222 26788888877765433222 4677899999999988764321
Q ss_pred HHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CC------CcCcccceeccccc
Q 002071 783 LLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LG------KLSSLEKLMIWGLK 849 (973)
Q Consensus 783 ~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~------~l~~L~~L~L~~~~ 849 (973)
...+..+++|+.|++++|.+.. +|.++..+++|+.|++++|.+...-+. +. ..++|+.|++.+.+
T Consensus 234 -~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 234 -NGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp -TTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred -hhHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 1245667899999999999987 999999999999999999986542221 22 25789999998854
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=184.60 Aligned_cols=261 Identities=16% Similarity=0.123 Sum_probs=188.1
Q ss_pred ccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCCCCcEEE
Q 002071 554 IHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLN 632 (973)
Q Consensus 554 ~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~ 632 (973)
.+....+|..+ .++|++|+++++.+ ..+++..|..+++|++|++++|.++ .+ |..++++++|++|+
T Consensus 40 ~~~l~~iP~~~--~~~L~~L~l~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 40 SGSLNSIPSGL--TEAVKSLDLSNNRI------TYISNSDLQRCVNLQALVLTSNGIN-----TIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp STTCSSCCTTC--CTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEE
T ss_pred CCCcccccccc--cccCcEEECCCCcC------cccCHHHhccCCCCCEEECCCCccC-----ccCHhhcCCCCCCCEEE
Confidence 33344445433 25899999998875 2233444788999999999995443 44 56789999999999
Q ss_pred ecCCCccccchh-hhccccccEEecCCCCCCcccCc--cccCCCCcceeecCCCCCCCcc-cccCCCccccccCCeeeeC
Q 002071 633 LSHQSIEKLPET-LCELYNLQKLDVSDCYGLKELPQ--GIGKLVNMKHLLDDKTDSLGHM-PVGIGRLTSLRTLVEFHVS 708 (973)
Q Consensus 633 Ls~~~i~~Lp~~-i~~L~~Lq~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~~~~~ 708 (973)
|++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++.+++|++|++..+.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999988876 8899999999999997 778876 6888999999999998544554 4568899999999887765
Q ss_pred CCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcC
Q 002071 709 GGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQ 788 (973)
Q Consensus 709 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~ 788 (973)
... ..+..+..+++|+.|++.++.. .. .. ...+..+++|+.|++++|....... ..+....
T Consensus 186 l~~----~~~~~l~~l~~L~~L~l~~n~l-~~---~~---~~~~~~~~~L~~L~L~~n~l~~~~~--------~~l~~~~ 246 (353)
T 2z80_A 186 LQS----YEPKSLKSIQNVSHLILHMKQH-IL---LL---EIFVDVTSSVECLELRDTDLDTFHF--------SELSTGE 246 (353)
T ss_dssp CCE----ECTTTTTTCSEEEEEEEECSCS-TT---HH---HHHHHHTTTEEEEEEESCBCTTCCC--------C------
T ss_pred cCc----cCHHHHhccccCCeecCCCCcc-cc---ch---hhhhhhcccccEEECCCCccccccc--------ccccccc
Confidence 433 2245567777888887776653 21 11 1123447889999999887643210 0111233
Q ss_pred CCCCccEEEEeeecCCC----CCCCccccccCccEEEEecCCCCCcCCC--CCCcCcccceecccc
Q 002071 789 PPLNLKELLIGLYRGNT----VFPGWMMPLTNLRSLTLEKCEKCKQIPP--LGKLSSLEKLMIWGL 848 (973)
Q Consensus 789 ~~~~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~ 848 (973)
....++.+++.++.+.. .+|.++..+++|+.|+|++|.+. .+|. ++.+++|++|+|.++
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 45678888888877654 25777888999999999999876 5665 588999999999883
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.6e-17 Score=180.50 Aligned_cols=226 Identities=18% Similarity=0.105 Sum_probs=128.1
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhc
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCE 647 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~ 647 (973)
++++.|.+.++.+. .++..+|..+++|++|++++|.++. +...|..+..+.+|++|+|++|.+..+|..+.+
T Consensus 28 ~~l~~L~L~~n~l~------~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSSNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp TTCCEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCE--EEEEEHHHHSCSCCCEEECCSCSEEEEEEEEET
T ss_pred CCCCEEECCCCccC------ccCHhHhhccccCCEEECCCCccCc--ccCcccccccccccCEEECCCCccccChhhcCC
Confidence 45566666555431 1222334555666666666543321 111234444556666666666666555555556
Q ss_pred cccccEEecCCCCCCcccCc--cccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCccccc
Q 002071 648 LYNLQKLDVSDCYGLKELPQ--GIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLK 725 (973)
Q Consensus 648 L~~Lq~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 725 (973)
+++|++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|++|
T Consensus 100 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L----------------------- 155 (306)
T 2z66_A 100 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL----------------------- 155 (306)
T ss_dssp CTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE-----------------------
T ss_pred CCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE-----------------------
Confidence 6666666666654 444432 45556666666666554333333334444444444
Q ss_pred CCCccCceeeeccC-CCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCC
Q 002071 726 NLELLHVCGIRRLG-NVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGN 804 (973)
Q Consensus 726 ~L~~L~~~~~~~l~-~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~ 804 (973)
++.++...+ ..+. .+..+++|+.|++++|..... ....+..+++|+.|++++|.+.
T Consensus 156 -----~l~~n~l~~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 156 -----KMAGNSFQENFLPD-------IFTELRNLTFLDLSQCQLEQL-----------SPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp -----ECTTCEEGGGEECS-------CCTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTSCCS
T ss_pred -----ECCCCccccccchh-------HHhhCcCCCEEECCCCCcCCc-----------CHHHhcCCCCCCEEECCCCccC
Confidence 333332211 0111 344556677777766654321 1234556788889999888887
Q ss_pred CCCCCccccccCccEEEEecCCCCCcCCC-CCCcC-cccceecccc
Q 002071 805 TVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLS-SLEKLMIWGL 848 (973)
Q Consensus 805 ~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~-~L~~L~L~~~ 848 (973)
...+..+..+++|+.|+|++|.+....|. +..+| +|+.|+|.+.
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 73344677889999999999987765554 77775 8999999873
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=179.69 Aligned_cols=100 Identities=26% Similarity=0.297 Sum_probs=63.4
Q ss_pred ccccEEEeccccccccccccc-CccccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCc-cccCCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQ-GIGKLVN 674 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~ 674 (973)
+.+++|+|++|.+ ..+ +..+.++.+|++|+|++|.|..++ ..+.++++|++|+|++|. +..+|. .+..+++
T Consensus 64 ~~l~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQI-----QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCC-----CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCcC-----CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhcccc
Confidence 5677777777443 333 356777777777777777777654 567777777777777776 666654 4677777
Q ss_pred cceeecCCCCCCCcccccCCCccccccCC
Q 002071 675 MKHLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 675 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
|++|++++|......+..+..+++|++|+
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 77777777743222222344444444443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=8.1e-17 Score=185.07 Aligned_cols=220 Identities=16% Similarity=0.119 Sum_probs=125.1
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCCCCcEEEecCCCccccchh-h
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKLPET-L 645 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~Lp~~-i 645 (973)
++++.|+++++.+ ..+.+..|..+++|++|+|++|.++ .+ |..+..+.+|++|+|++|.++.+|.. +
T Consensus 75 ~~l~~L~L~~n~i------~~~~~~~~~~l~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENNI------QMIQADTFRHLHHLEVLQLGRNSIR-----QIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp TTCSEEECCSSCC------CEECTTTTTTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred CCccEEECcCCcC------ceECHHHcCCCCCCCEEECCCCccC-----CcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 4566666666543 1222333556666666666664332 23 34566666666666666666655543 5
Q ss_pred hccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCCccccc-CCCccccccCCeeeeCCCCCCCCCCccCccc
Q 002071 646 CELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLGHMPVG-IGRLTSLRTLVEFHVSGGGGVGGSNACRLES 723 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 723 (973)
.++++|++|+|++|. +..+|. .+..+++|++|++++|+.+..+|.. +..+++|+.|++
T Consensus 144 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L------------------- 203 (452)
T 3zyi_A 144 EYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL------------------- 203 (452)
T ss_dssp SSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC-------------------
T ss_pred cccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC-------------------
Confidence 566666666666665 444443 4556666666666665554444432 445555555543
Q ss_pred ccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecC
Q 002071 724 LKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRG 803 (973)
Q Consensus 724 l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~ 803 (973)
.++... .++ .+..+++|+.|+|++|..... ....+..+++|+.|++++|.+
T Consensus 204 ---------~~n~l~-~~~--------~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 204 ---------GMCNIK-DMP--------NLTPLVGLEELEMSGNHFPEI-----------RPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ---------TTSCCS-SCC--------CCTTCTTCCEEECTTSCCSEE-----------CGGGGTTCTTCCEEECTTSCC
T ss_pred ---------CCCccc-ccc--------cccccccccEEECcCCcCccc-----------CcccccCccCCCEEEeCCCcC
Confidence 333221 111 134455666666666654321 123455666777777777776
Q ss_pred CCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccc
Q 002071 804 NTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 804 ~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 847 (973)
....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|.+
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 664466667777777777777765432222 56677777777766
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=5.5e-17 Score=176.20 Aligned_cols=225 Identities=17% Similarity=0.116 Sum_probs=160.9
Q ss_pred ccccEEEecccccccccccccCcc-ccCCCCCcEEEecCCCcccc---chhhhccccccEEecCCCCCCcccCccccCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPTN-VKRLVHLRYLNLSHQSIEKL---PETLCELYNLQKLDVSDCYGLKELPQGIGKLV 673 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~~-i~~L~~L~~L~Ls~~~i~~L---p~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~ 673 (973)
+.|++|++++| .+..+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++|. +..+|..+..++
T Consensus 28 ~~l~~L~L~~n-----~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCT
T ss_pred CCCCEEECCCC-----ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCC
Confidence 57999999994 44457654 68899999999999988755 6778889999999999997 778888889999
Q ss_pred CcceeecCCCCCCCccc-ccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhc
Q 002071 674 NMKHLLDDKTDSLGHMP-VGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLEL 752 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l 752 (973)
+|++|++++|......+ ..+..+++|++|++ .++......+. .+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l----------------------------~~n~l~~~~~~-------~~ 146 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI----------------------------SHTHTRVAFNG-------IF 146 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEEC----------------------------TTSCCEECSTT-------TT
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEEC----------------------------CCCcCCccchh-------hc
Confidence 99999999885432222 24555555555543 22222111111 35
Q ss_pred cCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCC
Q 002071 753 DKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIP 832 (973)
Q Consensus 753 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 832 (973)
..+++|+.|++++|.... ......+..+++|+.|++++|.+....|.++..+++|+.|+|++|.+....+
T Consensus 147 ~~l~~L~~L~l~~n~l~~----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQE----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp TTCTTCCEEECTTCEEGG----------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred ccCcCCCEEECCCCcccc----------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 567889999998775421 0122356778999999999999888458889999999999999998765333
Q ss_pred -CCCCcCcccceeccccccceeeCcccccccCCCC-CcccEeeccccc
Q 002071 833 -PLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAF-PKLKSLTFYWME 878 (973)
Q Consensus 833 -~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f-~~L~~L~l~~~~ 878 (973)
.+..+++|+.|+|+++. +...... ....+ ++|+.|++.+.+
T Consensus 217 ~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNH-IMTSKKQ----ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GGGTTCTTCCEEECTTSC-CCBCSSS----SCCCCCTTCCEEECTTCC
T ss_pred hhccCcccCCEeECCCCC-CcccCHH----HHHhhhccCCEEEccCCC
Confidence 37889999999999853 2221111 11245 489999998764
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=1.9e-16 Score=181.90 Aligned_cols=222 Identities=19% Similarity=0.250 Sum_probs=160.1
Q ss_pred ccccEEEeccccccccccccc-CccccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCcc-ccCCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQG-IGKLVN 674 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~ 674 (973)
+.|++|+|++|.++ .+ |..+.++.+|++|+|++|.|..++ ..+.++++|++|+|++|. +..+|.. +..+++
T Consensus 75 ~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTT
T ss_pred CCccEEECcCCcCc-----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCC
Confidence 57888899885443 34 567888889999999988888665 678888889999998887 6666654 778888
Q ss_pred cceeecCCCCCCCccc-ccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhcc
Q 002071 675 MKHLLDDKTDSLGHMP-VGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELD 753 (973)
Q Consensus 675 L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~ 753 (973)
|++|++++|... .+| ..+..+++|+.|++. ++..++.++. ..+.
T Consensus 149 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~----------------------------~~~~l~~i~~------~~~~ 193 (452)
T 3zyi_A 149 LRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG----------------------------ELKKLEYISE------GAFE 193 (452)
T ss_dssp CCEEECCSCCCC-EECTTTTTTCTTCCEEECC----------------------------CCTTCCEECT------TTTT
T ss_pred CCEEECCCCCcc-eeCHhHHhcCCcccEEeCC----------------------------CCCCccccCh------hhcc
Confidence 999988888543 333 345566666665432 2222221111 1355
Q ss_pred CCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC
Q 002071 754 KMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP 833 (973)
Q Consensus 754 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 833 (973)
.+++|+.|+|++|..... ..+..+++|+.|+|++|.+....|.++..+++|+.|+|++|.+....+.
T Consensus 194 ~l~~L~~L~L~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDM-------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp TCTTCCEEECTTSCCSSC-------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred CCCCCCEEECCCCccccc-------------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 678999999998866432 2467788999999999999885588899999999999999987665454
Q ss_pred -CCCcCcccceeccccccceeeCcccccccCCCCCcccEeeccccc
Q 002071 834 -LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWME 878 (973)
Q Consensus 834 -l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~ 878 (973)
+..+++|+.|+|+++ .++.+..... ..+++|+.|++.+.+
T Consensus 261 ~~~~l~~L~~L~L~~N-~l~~~~~~~~----~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 AFDGLASLVELNLAHN-NLSSLPHDLF----TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTSS----TTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCC-cCCccChHHh----ccccCCCEEEccCCC
Confidence 889999999999884 3433332221 257889999988754
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=2e-19 Score=208.03 Aligned_cols=347 Identities=18% Similarity=0.142 Sum_probs=224.5
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcccc-chhh-
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKL-PETL- 645 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~L-p~~i- 645 (973)
++|++|+++++.+ .......++..+++|++|++++|.++......+|..+..+++|++|+|++|.+... +..+
T Consensus 3 ~~l~~L~Ls~~~l-----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEEL-----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCCC-----CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhhhccc-----CchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 5789999988764 23334556889999999999998776544456788889999999999999998742 3333
Q ss_pred hccc----cccEEecCCCCCCc-----ccCccccCCCCcceeecCCCCCCCcccccC-----CCccccccCCeeeeCCCC
Q 002071 646 CELY----NLQKLDVSDCYGLK-----ELPQGIGKLVNMKHLLDDKTDSLGHMPVGI-----GRLTSLRTLVEFHVSGGG 711 (973)
Q Consensus 646 ~~L~----~Lq~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i-----~~l~~L~~L~~~~~~~~~ 711 (973)
..+. +|++|++++|. +. .+|..+..+++|++|++++|......+..+ ...++|++|++..+....
T Consensus 78 ~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 3455 69999999998 54 568889999999999999996432222222 235678888765553332
Q ss_pred CCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhc-cCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCC
Q 002071 712 GVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLEL-DKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPP 790 (973)
Q Consensus 712 ~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~ 790 (973)
......+..+..+++|+.|++.++..... ........+ ...++|+.|++++|..... ....+...+..+
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~---~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~~ 226 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEA---GVRVLCQGLKDSPCQLEALKLESCGVTSD-------NCRDLCGIVASK 226 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHH---HHHHHHHHHHHSCCCCCEEECTTSCCBTT-------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchH---HHHHHHHHHhcCCCCceEEEccCCCCcHH-------HHHHHHHHHHhC
Confidence 11001123345567888888777653211 111111122 2466999999998865322 334456667778
Q ss_pred CCccEEEEeeecCCCC----C-CCccccccCccEEEEecCCCCCc----CCC-CCCcCcccceeccccccceeeCcc-cc
Q 002071 791 LNLKELLIGLYRGNTV----F-PGWMMPLTNLRSLTLEKCEKCKQ----IPP-LGKLSSLEKLMIWGLKSVKRVANE-FL 859 (973)
Q Consensus 791 ~~L~~L~L~~~~~~~~----l-p~~~~~l~~L~~L~L~~~~~~~~----l~~-l~~l~~L~~L~L~~~~~l~~~~~~-~~ 859 (973)
++|++|++++|.+... + +.++..+++|+.|++++|.+... ++. +..+++|++|+|+++. +...+.. +.
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~ 305 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLC 305 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHH
Confidence 9999999999976541 1 22223588999999999976542 333 6678999999998853 2211110 11
Q ss_pred cccCCCCCcccEeecccccccccccc-cccCCCccCcccccceeeeccCccCCCC-C----CCCC-CCCCcceEEEccCC
Q 002071 860 GIEIIAFPKLKSLTFYWMEEFEEWDY-GITGMGSTSIMPCLSYLAIISCPKLKAL-P----DHFH-QMTTLKELYILGCA 932 (973)
Q Consensus 860 ~~~~~~f~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~p~L~~L~i~~c~~l~~l-p----~~l~-~l~~L~~L~i~~c~ 932 (973)
.......++|+.|.+.++. +..... .+ ......+++|+.|++++| .++.. + ..+. ..++|++|++++|.
T Consensus 306 ~~l~~~~~~L~~L~L~~n~-l~~~~~~~l--~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCS-FTAACCSHF--SSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHTSTTCCCCEEECTTSC-CBGGGHHHH--HHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHhccCCccceeeEcCCCC-CchHHHHHH--HHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 1111134799999999874 322110 00 001224689999999999 45422 1 1222 26799999999997
Q ss_pred Ccc
Q 002071 933 IPG 935 (973)
Q Consensus 933 ~l~ 935 (973)
...
T Consensus 382 i~~ 384 (461)
T 1z7x_W 382 VSD 384 (461)
T ss_dssp CCH
T ss_pred CCh
Confidence 653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1.7e-17 Score=181.04 Aligned_cols=220 Identities=15% Similarity=0.078 Sum_probs=130.0
Q ss_pred hHHHHHhhcccccEEEeccccccccccccc-CccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCc
Q 002071 589 ILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQ 667 (973)
Q Consensus 589 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~ 667 (973)
.+..++..+++|++|+|++|.++ .+ |..++.+++|++|+|++|.++.++. +..+++|++|++++|. +..+|.
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~ 97 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLS-----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV 97 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCC-----CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE
T ss_pred hHHHHhccCCCCCEEECcCCccC-----cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC
Confidence 34455666667777777774433 33 3567777777777777777765554 7777777777777776 555442
Q ss_pred cccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhh
Q 002071 668 GIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEA 747 (973)
Q Consensus 668 ~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~ 747 (973)
+++|++|++++|... .++.. .+++|++|++..+.... ..+..+..+++|+.|++.++......+
T Consensus 98 ----~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 161 (317)
T 3o53_A 98 ----GPSIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKITM----LRDLDEGCRSRVQYLDLKLNEIDTVNF----- 161 (317)
T ss_dssp ----CTTCCEEECCSSCCS-EEEEC--CCSSCEEEECCSSCCCS----GGGBCTGGGSSEEEEECTTSCCCEEEG-----
T ss_pred ----CCCcCEEECCCCccC-CcCcc--ccCCCCEEECCCCCCCC----ccchhhhccCCCCEEECCCCCCCcccH-----
Confidence 367777777777443 33322 24556666554433322 123344555666666655543321111
Q ss_pred hhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCC
Q 002071 748 KRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEK 827 (973)
Q Consensus 748 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 827 (973)
......+++|+.|++++|..... .....+++|+.|++++|.+.. +|..+..+++|+.|+|++|.+
T Consensus 162 -~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 162 -AELAASSDTLEHLNLQYNFIYDV-------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp -GGGGGGTTTCCEEECTTSCCCEE-------------ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC
T ss_pred -HHHhhccCcCCEEECCCCcCccc-------------ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcc
Confidence 00122456777777776654321 122236677777777777766 666677777777777777765
Q ss_pred CCcCCC-CCCcCcccceeccc
Q 002071 828 CKQIPP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 828 ~~~l~~-l~~l~~L~~L~L~~ 847 (973)
.. +|. ++.+++|+.|+|.+
T Consensus 227 ~~-l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 227 VL-IEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CE-ECTTCCCCTTCCEEECTT
T ss_pred cc-hhhHhhcCCCCCEEEccC
Confidence 43 443 66677777777766
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=181.47 Aligned_cols=236 Identities=16% Similarity=0.133 Sum_probs=149.0
Q ss_pred EEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCCCC
Q 002071 550 LMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLVHL 628 (973)
Q Consensus 550 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L 628 (973)
+.........+|..+ .++++.|.+.++.+ ..+.+..|..+++|++|+|++|.+ ..+ +..+..+.+|
T Consensus 48 v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i------~~~~~~~~~~l~~L~~L~Ls~n~i-----~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 48 VICVRKNLREVPDGI--STNTRLLNLHENQI------QIIKVNSFKHLRHLEILQLSRNHI-----RTIEIGAFNGLANL 114 (440)
T ss_dssp EECCSCCCSSCCSCC--CTTCSEEECCSCCC------CEECTTTTSSCSSCCEEECCSSCC-----CEECGGGGTTCSSC
T ss_pred EEeCCCCcCcCCCCC--CCCCcEEEccCCcC------CeeCHHHhhCCCCCCEEECCCCcC-----CccChhhccCCccC
Confidence 333333444445433 26788899988765 223334478899999999999544 344 4678889999
Q ss_pred cEEEecCCCccccch-hhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCCcccc-cCCCccccccCCee
Q 002071 629 RYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLGHMPV-GIGRLTSLRTLVEF 705 (973)
Q Consensus 629 ~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~ 705 (973)
++|+|++|.++.+|. .+..+++|++|+|++|. +..+|. .+..+++|++|++++|..+..+|. .+..+++|+.|++.
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 999999999998875 58899999999999997 666654 678899999999998766666665 36677777777654
Q ss_pred eeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHh
Q 002071 706 HVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLE 785 (973)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~ 785 (973)
.+.... .+ .+. .+++|+.|+|++|..... ...
T Consensus 194 ~n~l~~-----~~-~~~-------------------------------~l~~L~~L~Ls~N~l~~~-----------~~~ 225 (440)
T 3zyj_A 194 MCNLRE-----IP-NLT-------------------------------PLIKLDELDLSGNHLSAI-----------RPG 225 (440)
T ss_dssp TSCCSS-----CC-CCT-------------------------------TCSSCCEEECTTSCCCEE-----------CTT
T ss_pred CCcCcc-----cc-ccC-------------------------------CCcccCEEECCCCccCcc-----------Chh
Confidence 433221 01 122 334444455544433211 012
Q ss_pred hcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccc
Q 002071 786 ALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 786 ~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 847 (973)
.+..+++|+.|++++|.+....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|.+
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 344455666666666665553345555666666666666654432222 45566666666655
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=5.2e-18 Score=202.75 Aligned_cols=358 Identities=12% Similarity=0.043 Sum_probs=228.8
Q ss_pred CcceEEEEEEccCCCC-CCccccC-CCC-ceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc
Q 002071 544 GEKVCHLMLSIHEGAP-FPISTCR-IKR-MRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT 620 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~-~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~ 620 (973)
...++.+.+..+.... ....+.. +++ |++|.+.++.. +....+..+...+++|++|+|++|.+++.....++.
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 3457777777664432 1112222 344 99999987751 112334555678999999999997765433222444
Q ss_pred cccCCCCCcEEEecCCCcc-----ccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCC---Cccccc
Q 002071 621 NVKRLVHLRYLNLSHQSIE-----KLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSL---GHMPVG 692 (973)
Q Consensus 621 ~i~~L~~L~~L~Ls~~~i~-----~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~---~~~p~~ 692 (973)
....+++|++|++++|.++ .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 5567889999999999875 456667889999999999987 7778888889999999999754322 233345
Q ss_pred CCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCC
Q 002071 693 IGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDG 772 (973)
Q Consensus 693 i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 772 (973)
++.+++|+.|.+..+.. ...+..+..+++|+.|++.++.. . .......+..+++|+.|+++.+ .
T Consensus 266 l~~~~~L~~L~l~~~~~-----~~l~~~~~~~~~L~~L~Ls~~~l----~--~~~~~~~~~~~~~L~~L~L~~~-~---- 329 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGP-----NEMPILFPFAAQIRKLDLLYALL----E--TEDHCTLIQKCPNLEVLETRNV-I---- 329 (592)
T ss_dssp CCCCTTCCEEEETTCCT-----TTGGGGGGGGGGCCEEEETTCCC----C--HHHHHHHHTTCTTCCEEEEEGG-G----
T ss_pred hhccccccccCccccch-----hHHHHHHhhcCCCcEEecCCCcC----C--HHHHHHHHHhCcCCCEEeccCc-c----
Confidence 67777888776544321 22355566788888888776652 1 1222334678899999999833 1
Q ss_pred CCCCcchHHHHHhhcCCCCCccEEEEee----------ecCCC--CCCCccccccCccEEEEecCCCCCcC-CCCCC-cC
Q 002071 773 GRRKEEDDQQLLEALQPPLNLKELLIGL----------YRGNT--VFPGWMMPLTNLRSLTLEKCEKCKQI-PPLGK-LS 838 (973)
Q Consensus 773 ~~~~~~~~~~~l~~l~~~~~L~~L~L~~----------~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~l-~~l~~-l~ 838 (973)
.+..+......+++|++|++++ |...+ .++.....+++|+.|++..+...... ..++. ++
T Consensus 330 ------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 330 ------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403 (592)
T ss_dssp ------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC
T ss_pred ------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC
Confidence 1222233334568899999994 33222 01222346899999999766554322 22444 88
Q ss_pred cccceecccc---ccceeeCcc-cccccCCCCCcccEeecccccc-cccccccccCCCccCcccccceeeeccCccCC--
Q 002071 839 SLEKLMIWGL---KSVKRVANE-FLGIEIIAFPKLKSLTFYWMEE-FEEWDYGITGMGSTSIMPCLSYLAIISCPKLK-- 911 (973)
Q Consensus 839 ~L~~L~L~~~---~~l~~~~~~-~~~~~~~~f~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~-- 911 (973)
+|+.|++.+| ..++..+.. ........+++|+.|.+.+|.+ +..... ......+|+|+.|+|++|. ++
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----~~~~~~~~~L~~L~L~~n~-l~~~ 478 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----SYIGQYSPNVRWMLLGYVG-ESDE 478 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH----HHHHHSCTTCCEEEECSCC-SSHH
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH----HHHHHhCccceEeeccCCC-CCHH
Confidence 9999999854 333321100 0000012589999999977653 221110 0011248999999999985 54
Q ss_pred CCCCCCCCCCCcceEEEccCCC
Q 002071 912 ALPDHFHQMTTLKELYILGCAI 933 (973)
Q Consensus 912 ~lp~~l~~l~~L~~L~i~~c~~ 933 (973)
.++..+..+++|++|+|++|+.
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCC
T ss_pred HHHHHHhcCcccCeeeccCCCC
Confidence 3454456789999999999984
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=1.2e-15 Score=179.72 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=89.6
Q ss_pred ceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCC
Q 002071 546 KVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRL 625 (973)
Q Consensus 546 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L 625 (973)
.++.+.+..+....+|..+. ++|+.|.++++.+. .++. .+++|++|+|++|. +..+|. .+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~------~lp~----~l~~L~~L~Ls~N~-----l~~lp~---~l 100 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT------SLPA----LPPELRTLEVSGNQ-----LTSLPV---LP 100 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS------CCCC----CCTTCCEEEECSCC-----CSCCCC---CC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC------CCCC----cCCCCCEEEcCCCc-----CCcCCC---CC
Confidence 35667777776665565443 78888888888652 1111 46788889998854 445665 67
Q ss_pred CCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCee
Q 002071 626 VHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEF 705 (973)
Q Consensus 626 ~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 705 (973)
++|++|+|++|.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++|.. ..+|..+ ++|+.|++.
T Consensus 101 ~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~~~---~~L~~L~L~ 169 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKLWAY 169 (622)
T ss_dssp TTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCCCC---TTCCEEECC
T ss_pred CCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCCcc---CCCCEEECC
Confidence 888899998888888887 67788888888887 7777764 47888888888843 4455433 344555433
No 68
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.66 E-value=1.2e-16 Score=142.45 Aligned_cols=81 Identities=28% Similarity=0.425 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhh--hcCCHHHHHHHHHHHHhhhchhhHHH
Q 002071 4 AIVSPLLEMLISFAAEEMQQQAQLVTGVKKEVDKLTSNLRAIEAVLDDAEER--LVKDKAVRLWLEQLKYVSNDIEDVLD 81 (973)
Q Consensus 4 ~~v~~~~~~l~~~l~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~ed~ld 81 (973)
|+|+++++||++ ++.+|+.++.||++++++|+++|++|++||.+|+.+ +..+++++.|++||||+|||+||+||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999988 899999999999999999999999999999999987 56899999999999999999999999
Q ss_pred HHHHHHH
Q 002071 82 EWITARR 88 (973)
Q Consensus 82 ~~~~~~~ 88 (973)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999874
No 69
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=1.7e-15 Score=172.07 Aligned_cols=301 Identities=13% Similarity=0.032 Sum_probs=182.9
Q ss_pred CCceecchhHHHHHHHHh-cCCCccCCCCeEEEEE--EeCCCChHHHHHHHHhcchhhh---ccCc-eEEEEEeCccccH
Q 002071 182 EEEICGRVSEKNELISKL-LCESSEHQKGLHIISI--VGMGGIGKTALAQLACNNDEVN---RKFD-KILWVCVSEAFEE 254 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~s~~~~~ 254 (973)
+..++||+.+++++.+.+ .............+.| +|++|+||||||+.+++..... ..|+ .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4321100013445666 9999999999999999842211 1232 3678887777888
Q ss_pred HHHHHHHHHHhcCCCCC-CCcHHHHHHHHHHHhc--CCcEEEEEecCCCCCc------cChhhHHhhhcCC---C--CCc
Q 002071 255 FRIARAIVEALDVSSSG-LGEFQSLLKTISKSIT--GKRFFLVLDDVWDGDY------MKWEPFYHCLKNG---L--PES 320 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~------~~w~~l~~~l~~~---~--~gs 320 (973)
..++..++.+++...+. ..+..++...+.+.+. +++++|||||+|.... ..+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998764322 2345556666666664 7899999999987421 2233333333322 2 344
Q ss_pred EEEEEcCChHHHHHh--------CC-CCeeeCCCCCHHHHHHHHHHHhccC-CCcccchhHHHHHHHHHHhcC------C
Q 002071 321 KILVTTRKESVAFMM--------GS-TDIIPVQELAEEECWLLFNRIAFFG-RPIEECVKLEKIGRKIAGKCR------G 384 (973)
Q Consensus 321 ~iivTtr~~~v~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~------G 384 (973)
.+|+||+...+...+ .. ...+.+.+++.++.+++|.+++... ...... .+....|++.|+ |
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCC
Confidence 588888765533211 11 2239999999999999997654211 111111 345678888999 9
Q ss_pred chHHHHHHHhhhc------CC--CCHHHHHHHHhhhhhhhhhhcccc-hhhhhhhccCCchHHHHHHhhhcCcC--CCce
Q 002071 385 LPLTTKAIGSLMR------SK--KTEEEWQRILSSELWKIEEIEKGV-LTPLWLSYNDLPSRVKRCFSYCAVFP--KDFN 453 (973)
Q Consensus 385 lPLai~~~~~~l~------~~--~~~~~w~~~~~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~cfl~~~~fp--~~~~ 453 (973)
.|..+..++.... .. -+.+.+....... . ...+.-++..||.+.+.++..++.+. .+..
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 9976554443211 11 1334443333211 1 23355577889999999998888754 2334
Q ss_pred eCHHHHHHHHH--H-cCCCCCCCCCcHHHHHHHHHHHHHhcccccccc
Q 002071 454 IEKERLITLWM--A-QGYLGVEQDEETNIIGEEYFNILATRSFFQEFK 498 (973)
Q Consensus 454 i~~~~li~~wi--a-~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 498 (973)
++..++...+- + .- ... ..........+++.|...+++....
T Consensus 328 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTM-YNV--KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp BCHHHHHHHHHHHHHHH-SCC--CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred ccHHHHHHHHHHHHHhh-cCC--CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 55665555442 2 11 110 0112344567899999999998654
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=2.7e-16 Score=168.72 Aligned_cols=200 Identities=19% Similarity=0.131 Sum_probs=126.5
Q ss_pred cccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCccc-CccccCCC
Q 002071 597 LTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKEL-PQGIGKLV 673 (973)
Q Consensus 597 l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~l-p~~i~~L~ 673 (973)
.+.|++|++++|.+ ..+| ..+..+++|++|+|++|.++.+ |..+.++++|++|++++|..+..+ |..+..++
T Consensus 31 ~~~l~~L~l~~n~i-----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRI-----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCcC-----CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 45788888887433 3444 4577788888888888877766 567778888888888887645555 56677788
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhcc
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELD 753 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~ 753 (973)
+|++|++++|......|..+..+++|++|++..+.... ..+. .+.
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~-------------------------------~~~ 150 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA----LPDD-------------------------------TFR 150 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTT-------------------------------TTT
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc----cCHh-------------------------------Hhc
Confidence 88888888775544444556666666666543322111 0011 233
Q ss_pred CCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC
Q 002071 754 KMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP 833 (973)
Q Consensus 754 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 833 (973)
.+++|+.|++++|..... ....+..+++|+.|++++|.+....|.++..+++|+.|+|++|.+....+.
T Consensus 151 ~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSV-----------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp TCTTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred cCCCccEEECCCCccccc-----------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 455566666665543221 011345567777777777777664477777778888888888766543222
Q ss_pred -CCCcCcccceeccc
Q 002071 834 -LGKLSSLEKLMIWG 847 (973)
Q Consensus 834 -l~~l~~L~~L~L~~ 847 (973)
+..+++|+.|+|.+
T Consensus 220 ~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 220 ALAPLRALQYLRLND 234 (285)
T ss_dssp HHTTCTTCCEEECCS
T ss_pred HcccCcccCEEeccC
Confidence 67777788877776
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=2.6e-16 Score=168.90 Aligned_cols=219 Identities=17% Similarity=0.156 Sum_probs=156.4
Q ss_pred EEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCCCC
Q 002071 550 LMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLVHL 628 (973)
Q Consensus 550 lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L 628 (973)
+.........+|.. ..++|+.|.+.++.+ ..+.+..|..+++|++|++++|.++ .+ |..+..+++|
T Consensus 16 ~~c~~~~l~~ip~~--~~~~l~~L~l~~n~i------~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L 82 (285)
T 1ozn_A 16 TSCPQQGLQAVPVG--IPAASQRIFLHGNRI------SHVPAASFRACRNLTILWLHSNVLA-----RIDAAAFTGLALL 82 (285)
T ss_dssp EECCSSCCSSCCTT--CCTTCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCC-----EECTTTTTTCTTC
T ss_pred EEcCcCCcccCCcC--CCCCceEEEeeCCcC------CccCHHHcccCCCCCEEECCCCccc-----eeCHhhcCCccCC
Confidence 33333344434433 357899999999875 2334445788999999999995543 44 6789999999
Q ss_pred cEEEecCCC-cccc-chhhhccccccEEecCCCCCCccc-CccccCCCCcceeecCCCCCCCcccccCCCccccccCCee
Q 002071 629 RYLNLSHQS-IEKL-PETLCELYNLQKLDVSDCYGLKEL-PQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEF 705 (973)
Q Consensus 629 ~~L~Ls~~~-i~~L-p~~i~~L~~Lq~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 705 (973)
++|++++|. +..+ |..+.++++|++|++++|. +..+ |..+..+++|++|++++|......+..++.+++|++|++.
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 999999997 8877 6789999999999999998 5555 6678899999999999996544334457888888888754
Q ss_pred eeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHh
Q 002071 706 HVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLE 785 (973)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~ 785 (973)
.+.... ..+. .+..+++|+.|++++|..... ...
T Consensus 162 ~n~l~~----~~~~-------------------------------~~~~l~~L~~L~l~~n~l~~~-----------~~~ 195 (285)
T 1ozn_A 162 GNRISS----VPER-------------------------------AFRGLHSLDRLLLHQNRVAHV-----------HPH 195 (285)
T ss_dssp SSCCCE----ECTT-------------------------------TTTTCTTCCEEECCSSCCCEE-----------CTT
T ss_pred CCcccc----cCHH-------------------------------HhcCccccCEEECCCCccccc-----------CHh
Confidence 432211 0011 233455666666666544321 123
Q ss_pred hcCCCCCccEEEEeeecCCCCCC-CccccccCccEEEEecCCCCC
Q 002071 786 ALQPPLNLKELLIGLYRGNTVFP-GWMMPLTNLRSLTLEKCEKCK 829 (973)
Q Consensus 786 ~l~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~ 829 (973)
.+..+++|+.|++++|.+.. +| .++..+++|+.|+|++|....
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccC
Confidence 45667889999999998887 54 557889999999999987543
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=2.5e-17 Score=179.67 Aligned_cols=242 Identities=14% Similarity=0.042 Sum_probs=182.2
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchh
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPET 644 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~ 644 (973)
..+++|+.|+++++.+ ....+..|..+++|++|+|++|.++ .++. +..+++|++|++++|.++.+|.
T Consensus 31 ~~~~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~-~~~l~~L~~L~Ls~n~l~~l~~- 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNPL------SQISAADLAPFTKLELLNLSSNVLY-----ETLD-LESLSTLRTLDLNNNYVQELLV- 97 (317)
T ss_dssp TTGGGCSEEECTTSCC------CCCCHHHHTTCTTCCEEECTTSCCE-----EEEE-ETTCTTCCEEECCSSEEEEEEE-
T ss_pred ccCCCCCEEECcCCcc------CcCCHHHhhCCCcCCEEECCCCcCC-----cchh-hhhcCCCCEEECcCCccccccC-
Confidence 4567899999999875 2345566899999999999996553 3443 8899999999999999887763
Q ss_pred hhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCc-cc
Q 002071 645 LCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRL-ES 723 (973)
Q Consensus 645 i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l-~~ 723 (973)
+++|++|++++|. +..++.. .+++|++|++++|......|..++.+++|+.|++..+.... ..+..+ ..
T Consensus 98 ---~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~~ 167 (317)
T 3o53_A 98 ---GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAAS 167 (317)
T ss_dssp ---CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE----EEGGGGGGG
T ss_pred ---CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc----ccHHHHhhc
Confidence 4899999999997 6666543 47889999999997655556678889999999876654432 112233 35
Q ss_pred ccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecC
Q 002071 724 LKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRG 803 (973)
Q Consensus 724 l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~ 803 (973)
+++|+.|++.++.... ++ ....+++|+.|++++|..... ...+..+++|+.|++++|.+
T Consensus 168 l~~L~~L~L~~N~l~~-~~--------~~~~l~~L~~L~Ls~N~l~~l------------~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYD-VK--------GQVVFAKLKTLDLSSNKLAFM------------GPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp TTTCCEEECTTSCCCE-EE--------CCCCCTTCCEEECCSSCCCEE------------CGGGGGGTTCSEEECTTSCC
T ss_pred cCcCCEEECCCCcCcc-cc--------cccccccCCEEECCCCcCCcc------------hhhhcccCcccEEECcCCcc
Confidence 6788888877765422 11 233578999999999876432 12355678999999999999
Q ss_pred CCCCCCccccccCccEEEEecCCCC-CcCCC-CCCcCcccceeccccccc
Q 002071 804 NTVFPGWMMPLTNLRSLTLEKCEKC-KQIPP-LGKLSSLEKLMIWGLKSV 851 (973)
Q Consensus 804 ~~~lp~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~~L~~L~L~~~~~l 851 (973)
.. +|.++..+++|+.|+|++|... ..+|. ++.+++|+.|.+.++..+
T Consensus 227 ~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 227 VL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp CE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 87 8999999999999999999876 34443 677888888888765544
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=3.4e-16 Score=180.81 Aligned_cols=210 Identities=15% Similarity=0.095 Sum_probs=134.2
Q ss_pred cccEEEeccccccccccccc-CccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcce
Q 002071 599 SLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKH 677 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~ 677 (973)
+|++|+|++|.++ .+ |..++.+++|++|+|++|.++.++. ++.+++|++|+|++|. +..+|. .++|++
T Consensus 35 ~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLS-----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIET 103 (487)
T ss_dssp GCCEEECCSSCCC-----CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCE
T ss_pred CccEEEeeCCcCC-----CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCE
Confidence 6777777774443 33 4567777777777777777765554 7777777777777776 555553 267777
Q ss_pred eecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhc-cCCC
Q 002071 678 LLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLEL-DKMK 756 (973)
Q Consensus 678 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l-~~~~ 756 (973)
|++++|.... +|. ..+++|+.|++..+.... ..+..+..+++|+.|++.++...+..+. .+ ..++
T Consensus 104 L~L~~N~l~~-~~~--~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~l~~~l~ 169 (487)
T 3oja_A 104 LHAANNNISR-VSC--SRGQGKKNIYLANNKITM----LRDLDEGCRSRVQYLDLKLNEIDTVNFA-------ELAASSD 169 (487)
T ss_dssp EECCSSCCCC-EEE--CCCSSCEEEECCSSCCCS----GGGBCGGGGSSEEEEECTTSCCCEEEGG-------GGGGGTT
T ss_pred EECcCCcCCC-CCc--cccCCCCEEECCCCCCCC----CCchhhcCCCCCCEEECCCCCCCCcChH-------HHhhhCC
Confidence 7777774433 332 234566666654443332 2244455666666666665544322111 22 2567
Q ss_pred CCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CC
Q 002071 757 YLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LG 835 (973)
Q Consensus 757 ~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~ 835 (973)
+|+.|+|++|..... .....+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+.. +|. ++
T Consensus 170 ~L~~L~Ls~N~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~ 234 (487)
T 3oja_A 170 TLEHLNLQYNFIYDV-------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALR 234 (487)
T ss_dssp TCCEEECTTSCCCEE-------------ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred cccEEecCCCccccc-------------cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhc
Confidence 788888877765321 123346788888888888877 77777888888888888887654 444 77
Q ss_pred CcCcccceecccc
Q 002071 836 KLSSLEKLMIWGL 848 (973)
Q Consensus 836 ~l~~L~~L~L~~~ 848 (973)
.+++|+.|++.++
T Consensus 235 ~l~~L~~L~l~~N 247 (487)
T 3oja_A 235 FSQNLEHFDLRGN 247 (487)
T ss_dssp CCTTCCEEECTTC
T ss_pred cCCCCCEEEcCCC
Confidence 7888888888774
No 74
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=2.3e-14 Score=158.73 Aligned_cols=294 Identities=13% Similarity=0.085 Sum_probs=179.2
Q ss_pred cCCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc------c
Q 002071 180 IDEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF------E 253 (973)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~------~ 253 (973)
..+..|+||+.+++++.+++.. + +++.|+|++|+|||||++++++. . + .+|+.+.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCC
Confidence 3456799999999999998842 1 58999999999999999999873 2 2 6788775443 5
Q ss_pred HHHHHHHHHHHhcC-----------------CC-CCCCcHHHHHHHHHHHhcC-CcEEEEEecCCCCCc-------cChh
Q 002071 254 EFRIARAIVEALDV-----------------SS-SGLGEFQSLLKTISKSITG-KRFFLVLDDVWDGDY-------MKWE 307 (973)
Q Consensus 254 ~~~~~~~i~~~l~~-----------------~~-~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~-------~~w~ 307 (973)
...+.+.+.+.+.. .. .......++.+.+.+..+. ++++|||||++..+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 56666766665532 00 0123456666666665542 389999999977432 1122
Q ss_pred hHHhhhcCCCCCcEEEEEcCChHH-HHH---------h-CC-CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHH
Q 002071 308 PFYHCLKNGLPESKILVTTRKESV-AFM---------M-GS-TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIG 375 (973)
Q Consensus 308 ~l~~~l~~~~~gs~iivTtr~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 375 (973)
.+...+.. .++.++|+|++.... ... . +. ...+.+.+|+.+|+.+++.+.+...+.... .+..
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHH
Confidence 23222222 257889999987654 221 0 11 237899999999999999875432221111 3456
Q ss_pred HHHHHhcCCchHHHHHHHhhhcCCCCHHHHHH-HHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhcCcCCCcee
Q 002071 376 RKIAGKCRGLPLTTKAIGSLMRSKKTEEEWQR-ILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDFNI 454 (973)
Q Consensus 376 ~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i 454 (973)
..|++.|+|+|+++..++..+....+...+.. +.+.....+ ...+ -.+.+ + ++..+..+..+|. + .+
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l---~~l~~-~-~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI---MGEL---EELRR-R-SPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHH---HHHHH-H-CHHHHHHHHHHHT---T-CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH---HHHH---HHHHh-C-ChhHHHHHHHHHh---C-CC
Confidence 88999999999999998876432222222211 111100000 0011 11122 2 6788889988887 2 23
Q ss_pred CHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHhcccccccccCCCCCeeEEEE-cchHHHHH
Q 002071 455 EKERLITLWMAQGYLGVEQDEETNIIGEEYFNILATRSFFQEFKKDDDNRIIECKM-HDIVHDFA 518 (973)
Q Consensus 455 ~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~-Hdlv~d~a 518 (973)
+...+....-+.. ++. .......+++.|.+.+++.... + .|++ |++++++.
T Consensus 297 ~~~~l~~~~~~~~-----~~~-~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 297 RWSLIRDYLAVKG-----TKI-PEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp SHHHHHHHHHHTT-----CCC-CHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred CHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 4455554432211 011 1244678999999999997641 1 2444 66777765
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=1.7e-17 Score=198.50 Aligned_cols=367 Identities=14% Similarity=0.084 Sum_probs=193.7
Q ss_pred CcceEEEEEEccCCCC-CCcccc-CCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 544 GEKVCHLMLSIHEGAP-FPISTC-RIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
...++++.+..+.... ....+. .+++|++|.+.++.. +....++.++..+++|++|++++|.+++.....++..
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG----FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE----EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC----CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 3467778887765432 112222 588999999998731 2233356667789999999999987765444445555
Q ss_pred ccCCCCCcEEEecCCC--cc--ccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCC------CCcccc
Q 002071 622 VKRLVHLRYLNLSHQS--IE--KLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDS------LGHMPV 691 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~--i~--~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~------~~~~p~ 691 (973)
...+++|++|++++|. +. .++..+.++++|++|++++|..+..+|..+..+++|++|++..+.. ...++.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 5678899999999986 32 3444456789999999999966777888888899999998765521 111222
Q ss_pred cCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccC-----------------
Q 002071 692 GIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDK----------------- 754 (973)
Q Consensus 692 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~----------------- 754 (973)
.+.++++|+.|..+... .....+..+..+++|+.|++.++. +. .......+..
T Consensus 260 ~l~~~~~L~~Ls~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~-l~-----~~~l~~~~~~~~~L~~L~l~~~~~~~~ 329 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDA----VPAYLPAVYSVCSRLTTLNLSYAT-VQ-----SYDLVKLLCQCPKLQRLWVLDYIEDAG 329 (594)
T ss_dssp HHHTCTTCCEEECCBTC----CGGGGGGGHHHHTTCCEEECTTCC-CC-----HHHHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred HHhcCCCcccccCCccc----chhhHHHHHHhhCCCCEEEccCCC-CC-----HHHHHHHHhcCCCcCEEeCcCccCHHH
Confidence 34444555544211000 000111122234444444444333 11 0111112233
Q ss_pred -------CCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccc-cccCccEEEEe---
Q 002071 755 -------MKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMM-PLTNLRSLTLE--- 823 (973)
Q Consensus 755 -------~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~L~--- 823 (973)
+++|+.|++..+...... .........+......+++|+.|.+.++.++...+..+. .+++|+.|+|.
T Consensus 330 l~~l~~~~~~L~~L~L~~~~~~g~~-~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 330 LEVLASTCKDLRELRVFPSEPFVME-PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCTTCSS-CSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHhCCCCCEEEEecCcccccc-cCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 445555555331100000 000001111111111245666665554443321112222 46677777776
Q ss_pred --cCCCCCcCCC-------CCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccC
Q 002071 824 --KCEKCKQIPP-------LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTS 894 (973)
Q Consensus 824 --~~~~~~~l~~-------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 894 (973)
+|......|. +..+++|+.|+|++ .+.. .........+++|+.|.+.++. +..... .....
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~---~~~~~l~~~~~~L~~L~L~~~~-i~~~~~----~~l~~ 478 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD---KVFEYIGTYAKKMEMLSVAFAG-DSDLGM----HHVLS 478 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH---HHHHHHHHHCTTCCEEEEESCC-SSHHHH----HHHHH
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccH---HHHHHHHHhchhccEeeccCCC-CcHHHH----HHHHh
Confidence 2332222221 34456677777644 2211 1000000136778888777663 211100 00013
Q ss_pred cccccceeeeccCccCC-CCCCCCCCCCCcceEEEccCCCcc
Q 002071 895 IMPCLSYLAIISCPKLK-ALPDHFHQMTTLKELYILGCAIPG 935 (973)
Q Consensus 895 ~~p~L~~L~i~~c~~l~-~lp~~l~~l~~L~~L~i~~c~~l~ 935 (973)
.+|+|+.|+|++|+.-. .++..+..+++|+.|++++|+...
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 47999999999997521 122234568899999999998743
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.6e-16 Score=172.74 Aligned_cols=252 Identities=16% Similarity=0.111 Sum_probs=151.2
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcc--ccchhhh-------ccccccEEecCCCCCCcc
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE--KLPETLC-------ELYNLQKLDVSDCYGLKE 664 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~--~Lp~~i~-------~L~~Lq~L~L~~~~~~~~ 664 (973)
+...+.|+.|++++|. + .+|..+... |++|+|++|.+. .+|..+. ++.+|++|++++|.....
T Consensus 39 ~~~~~~L~~l~l~~n~-----l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDT-----E-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEEECTTHHHHCCT-----T-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred EccCCCceeEeecccc-----c-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 3455667777777743 3 456555443 777777777764 4565554 677777777777763345
Q ss_pred cCccc--cCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCC
Q 002071 665 LPQGI--GKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVT 742 (973)
Q Consensus 665 lp~~i--~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~ 742 (973)
+|..+ ..+++|++|++++|.... .|..++.+.. ..+++|+.|++.++...+..+
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~-----------------------~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQ-----------------------WLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHHHT-----------------------TCCTTCCEEEEESCSCCCCCT
T ss_pred hHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHHHH-----------------------hhcCCCcEEEeeCCCCccchH
Confidence 66665 677777777777774433 3544444300 001334444443333222111
Q ss_pred ChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhc--CCCCCccEEEEeeecCCCCCCC---c-cccccC
Q 002071 743 DVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEAL--QPPLNLKELLIGLYRGNTVFPG---W-MMPLTN 816 (973)
Q Consensus 743 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~L~~~~~~~~lp~---~-~~~l~~ 816 (973)
. .+..+++|+.|++++|... .....+..+ ..+++|++|++++|.+.. +|. + +..+++
T Consensus 167 ~-------~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 167 E-------QVRVFPALSTLDLSDNPEL---------GERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAARVQ 229 (312)
T ss_dssp T-------TCCCCSSCCEEECCSCTTC---------HHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTTCC
T ss_pred H-------HhccCCCCCEEECCCCCcC---------cchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcCCC
Confidence 1 3455667777777766432 111223333 567788888888887764 322 2 236688
Q ss_pred ccEEEEecCCCCCcC--CCCCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccccccccccCCCccC
Q 002071 817 LRSLTLEKCEKCKQI--PPLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTS 894 (973)
Q Consensus 817 L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 894 (973)
|+.|+|++|.+.... +.+..+++|++|+|+++. +..++. .
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~------------------------------l~~ip~--------~ 271 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG------------------------------LKQVPK--------G 271 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC------------------------------CSSCCS--------S
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc------------------------------cChhhh--------h
Confidence 888888888766544 235566777777776521 111111 1
Q ss_pred cccccceeeeccCccCCCCCCCCCCCCCcceEEEccCCCc
Q 002071 895 IMPCLSYLAIISCPKLKALPDHFHQMTTLKELYILGCAIP 934 (973)
Q Consensus 895 ~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~i~~c~~l 934 (973)
.+++|+.|++++| .++.+|. +..+++|++|++++|+..
T Consensus 272 ~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred ccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCC
Confidence 2278999999888 5787876 788999999999999764
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.1e-16 Score=185.00 Aligned_cols=237 Identities=14% Similarity=0.029 Sum_probs=178.8
Q ss_pred CCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhh
Q 002071 566 RIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETL 645 (973)
Q Consensus 566 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i 645 (973)
.+++|++|+++++.+. .+++..|..+++|++|+|++|.++ ..+. ++.+++|++|+|++|.++.+|.
T Consensus 32 ~~~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~-l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLS------QISAADLAPFTKLELLNLSSNVLY-----ETLD-LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp TGGGCCEEECCSSCCC------CCCGGGGTTCTTCCEEECTTSCCE-----EEEE-CTTCTTCCEEECCSSEEEEEEE--
T ss_pred cCCCccEEEeeCCcCC------CCCHHHHhCCCCCCEEEeeCCCCC-----CCcc-cccCCCCCEEEecCCcCCCCCC--
Confidence 4458999999998762 234445788999999999996554 3333 8899999999999999888774
Q ss_pred hccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcc-cc
Q 002071 646 CELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLE-SL 724 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~-~l 724 (973)
.++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|++|++..+.... ..+..+. .+
T Consensus 98 --~~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l 168 (487)
T 3oja_A 98 --GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASS 168 (487)
T ss_dssp --CTTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----EEGGGGGGGT
T ss_pred --CCCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----cChHHHhhhC
Confidence 3899999999997 6666543 56889999999997766667778889999999876654432 2233443 67
Q ss_pred cCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCC
Q 002071 725 KNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGN 804 (973)
Q Consensus 725 ~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~ 804 (973)
++|+.|++.++...+. + ....+++|+.|+|++|..... ...+..+++|+.|++++|.+.
T Consensus 169 ~~L~~L~Ls~N~l~~~-~--------~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDV-K--------GQVVFAKLKTLDLSSNKLAFM------------GPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp TTCCEEECTTSCCCEE-E--------CCCCCTTCCEEECCSSCCCEE------------CGGGGGGTTCSEEECTTSCCC
T ss_pred CcccEEecCCCccccc-c--------ccccCCCCCEEECCCCCCCCC------------CHhHcCCCCccEEEecCCcCc
Confidence 8888888777764322 1 234588999999999876432 223566789999999999999
Q ss_pred CCCCCccccccCccEEEEecCCCC-CcCCC-CCCcCcccceeccc
Q 002071 805 TVFPGWMMPLTNLRSLTLEKCEKC-KQIPP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 805 ~~lp~~~~~l~~L~~L~L~~~~~~-~~l~~-l~~l~~L~~L~L~~ 847 (973)
+ +|.++..+++|+.|++++|... ..+|. ++.++.|+.|.+..
T Consensus 228 ~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 228 L-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp E-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred c-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 8 9999999999999999999865 33443 67788888888764
No 78
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=1.1e-13 Score=153.75 Aligned_cols=292 Identities=12% Similarity=0.101 Sum_probs=173.9
Q ss_pred CCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc-----ccHH
Q 002071 181 DEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA-----FEEF 255 (973)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~ 255 (973)
.+..|+||+++++++.+ +. . +++.|+|++|+|||||++++.+. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 72 1 58999999999999999999874 222 3578887643 3344
Q ss_pred HHHHHHHHHhcC--------------------CCC---------CCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCc---
Q 002071 256 RIARAIVEALDV--------------------SSS---------GLGEFQSLLKTISKSITGKRFFLVLDDVWDGDY--- 303 (973)
Q Consensus 256 ~~~~~i~~~l~~--------------------~~~---------~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--- 303 (973)
.+...+.+.+.. ... .......+.+.+.+... ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 454444443310 000 12244555555554433 499999999976432
Q ss_pred cChhhHHhhhcCCCCCcEEEEEcCChHHHHHh-----------CC-CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhH
Q 002071 304 MKWEPFYHCLKNGLPESKILVTTRKESVAFMM-----------GS-TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKL 371 (973)
Q Consensus 304 ~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 371 (973)
..|..+...+.....+.++|+|++.......+ +. ...+.+.+|+.+|+.+++.+.+...+.... .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--D- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--C-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--c-
Confidence 23333333332223468999999987542211 11 247899999999999999875421111111 1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhhhcCCCCHHHHHHHHhhhhhhhhhhcccchhhh-hhhcc--CCchHHHHHHhhhcCc
Q 002071 372 EKIGRKIAGKCRGLPLTTKAIGSLMRSKKTEEEWQRILSSELWKIEEIEKGVLTPL-WLSYN--DLPSRVKRCFSYCAVF 448 (973)
Q Consensus 372 ~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l-~~sy~--~L~~~~k~cfl~~~~f 448 (973)
...|++.|+|+|+++..++..+....+...|..-.-. .. ...+...+ .+.+. .|++..+..+..+|.
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE---YA---KKLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH---HH---HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH---HH---HHHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 1789999999999999998776433333333221100 00 00011111 11221 678899999999998
Q ss_pred CCCceeCHHHHHHHHH-HcCCCCCCCCCcHHHHHHHHHHHHHhcccccccccCCCCCeeEEE-EcchHHHHH
Q 002071 449 PKDFNIEKERLITLWM-AQGYLGVEQDEETNIIGEEYFNILATRSFFQEFKKDDDNRIIECK-MHDIVHDFA 518 (973)
Q Consensus 449 p~~~~i~~~~li~~wi-a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-~Hdlv~d~a 518 (973)
+. +...+....- ..|. .........+++.|.+.+++.... + .|+ .|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 22 4444433210 1121 011234678899999999997542 1 245 467887753
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=3.5e-15 Score=162.20 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=119.6
Q ss_pred hcccccEEEecccccccccccccCccc--cCCCCCcEEEecCCCccccchhhhcc-----ccccEEecCCCCCCcccC-c
Q 002071 596 ELTSLRAIEVSKLFYTKSTILEIPTNV--KRLVHLRYLNLSHQSIEKLPETLCEL-----YNLQKLDVSDCYGLKELP-Q 667 (973)
Q Consensus 596 ~l~~Lr~L~L~~~~~~~~~~~~lp~~i--~~L~~L~~L~Ls~~~i~~Lp~~i~~L-----~~Lq~L~L~~~~~~~~lp-~ 667 (973)
.+++|++|++++|.+++ .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++|. +..+| .
T Consensus 93 ~l~~L~~L~L~~n~l~~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG----TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEBCBS----CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTT
T ss_pred CcCCccEEEccCCcccc----hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHH
Confidence 56777777777754432 355554 66777777777777777667666666 677777777776 44443 5
Q ss_pred cccCCCCcceeecCCCCCCCc--ccccC--CCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCC
Q 002071 668 GIGKLVNMKHLLDDKTDSLGH--MPVGI--GRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTD 743 (973)
Q Consensus 668 ~i~~L~~L~~L~l~~~~~~~~--~p~~i--~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~ 743 (973)
.++.+++|++|++++|..... .|..+ +.+++|++|+ +.++.. ..
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~----------------------------L~~N~l----~~ 215 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA----------------------------LRNAGM----ET 215 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEE----------------------------CTTSCC----CC
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEE----------------------------CCCCcC----cc
Confidence 667777777777777643222 12222 3444444443 333321 11
Q ss_pred hhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEe
Q 002071 744 VGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLE 823 (973)
Q Consensus 744 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~ 823 (973)
........+..+++|+.|++++|......+ ...+..+++|+.|++++|.++. +|.++. ++|+.|+|+
T Consensus 216 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAG----------APSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLS 282 (312)
T ss_dssp HHHHHHHHHHTTCCCSEEECTTSCCCSSCC----------CSCCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECC
T ss_pred hHHHHHHHHhcCCCCCEEECCCCcCCcccc----------hhhhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECC
Confidence 111111223455677777777665533200 0123345678888888888775 777765 778888888
Q ss_pred cCCCCCcCCCCCCcCcccceeccc
Q 002071 824 KCEKCKQIPPLGKLSSLEKLMIWG 847 (973)
Q Consensus 824 ~~~~~~~l~~l~~l~~L~~L~L~~ 847 (973)
+|.+.. +|.+..+++|++|+|.+
T Consensus 283 ~N~l~~-~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 283 YNRLDR-NPSPDELPQVGNLSLKG 305 (312)
T ss_dssp SSCCCS-CCCTTTSCEEEEEECTT
T ss_pred CCCCCC-ChhHhhCCCCCEEeccC
Confidence 886644 36677778888888766
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=1.1e-14 Score=157.69 Aligned_cols=190 Identities=19% Similarity=0.198 Sum_probs=115.5
Q ss_pred hhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCC
Q 002071 595 EELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVN 674 (973)
Q Consensus 595 ~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~ 674 (973)
..++.|+.|++++| .+..+| .+..+++|++|+|++|.+..+|. +.++++|++|++++|. +..+| .+..+++
T Consensus 38 ~~l~~L~~L~l~~~-----~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-----GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHTCCEEECTTS-----CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTT
T ss_pred HHcCCcCEEEeeCC-----CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCC
Confidence 34566777777773 333454 46677777777777777776666 7777777777777776 55555 4667777
Q ss_pred cceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccC
Q 002071 675 MKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDK 754 (973)
Q Consensus 675 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~ 754 (973)
|++|++++|.. ..+|. ++.+++|+.|++..+.... ++ .+..
T Consensus 109 L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-----------------------------~~--------~l~~ 149 (308)
T 1h6u_A 109 IKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITN-----------------------------IS--------PLAG 149 (308)
T ss_dssp CCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCC-----------------------------CG--------GGGG
T ss_pred CCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCc-----------------------------Cc--------cccC
Confidence 77777777643 33332 5555555555433322111 00 0223
Q ss_pred CCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCC
Q 002071 755 MKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPL 834 (973)
Q Consensus 755 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l 834 (973)
+++|+.|+++.|..... ..+..+++|+.|++++|.+.. +|. +..+++|+.|+|++|.+.. ++.+
T Consensus 150 l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~-~~~l 213 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSDL-------------TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSPL 213 (308)
T ss_dssp CTTCCEEECCSSCCCCC-------------GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGGG
T ss_pred CCCccEEEccCCcCCCC-------------hhhcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc-cccc
Confidence 44555555555433211 114556777777777777766 544 6677888888888886543 4457
Q ss_pred CCcCcccceecccc
Q 002071 835 GKLSSLEKLMIWGL 848 (973)
Q Consensus 835 ~~l~~L~~L~L~~~ 848 (973)
..+++|+.|+|.++
T Consensus 214 ~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQ 227 (308)
T ss_dssp TTCTTCCEEEEEEE
T ss_pred cCCCCCCEEEccCC
Confidence 77888888888763
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=1e-14 Score=155.58 Aligned_cols=201 Identities=18% Similarity=0.141 Sum_probs=120.7
Q ss_pred ccccEEEecccccccccccccCc-cccCCCCCcEEEecCCCccccch-hhhccccccEEecCCCCCCcccC-ccccCCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLKELP-QGIGKLVN 674 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~ 674 (973)
+.|++|++++|.+ ..++. .+.++++|++|++++|.+..+|. .+.++++|++|++++|. +..++ ..+..+++
T Consensus 28 ~~l~~L~ls~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCC-----CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTT
T ss_pred CCccEEECCCCcc-----cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCcc
Confidence 4688888888443 34443 67788888888888888876654 67788888888888887 54444 56778888
Q ss_pred cceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccC
Q 002071 675 MKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDK 754 (973)
Q Consensus 675 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~ 754 (973)
|++|++++|......+..++.+++|++|++..+..... ..+. .+..
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~l~~-------------------------------~~~~ 147 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF---KLPE-------------------------------YFSN 147 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC---CCCG-------------------------------GGGG
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCcccee---cCch-------------------------------hhcc
Confidence 88888887754433333466666666665443322110 0122 2334
Q ss_pred CCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCcc-EEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC
Q 002071 755 MKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLK-ELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP 833 (973)
Q Consensus 755 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 833 (973)
+++|+.|++++|...... ...+..+..++.|. +|++++|.+.. +|.......+|+.|+|++|.+....+.
T Consensus 148 l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIY--------CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp CTTCCEEECCSSCCCEEC--------GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred CCCCCEEECCCCCCCcCC--------HHHhhhhhhccccceeeecCCCcccc-cCccccCCCcccEEECCCCceeecCHh
Confidence 455555555555432210 00111222233333 67777777666 555544555788888888875543333
Q ss_pred -CCCcCcccceeccc
Q 002071 834 -LGKLSSLEKLMIWG 847 (973)
Q Consensus 834 -l~~l~~L~~L~L~~ 847 (973)
++.+++|+.|+|.+
T Consensus 219 ~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 219 IFDRLTSLQKIWLHT 233 (276)
T ss_dssp TTTTCCSCCEEECCS
T ss_pred HhcccccccEEEccC
Confidence 57778888888876
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=7.5e-14 Score=148.19 Aligned_cols=61 Identities=23% Similarity=0.197 Sum_probs=38.5
Q ss_pred cCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC-CCCcCcccceeccc
Q 002071 787 LQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 787 l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 847 (973)
+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....+. +..+++|+.|+|.+
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 34456677777777766662233466777777777777765442222 66677777777766
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=5e-14 Score=149.70 Aligned_cols=101 Identities=28% Similarity=0.326 Sum_probs=55.9
Q ss_pred hhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCc-cccCCC
Q 002071 595 EELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQ-GIGKLV 673 (973)
Q Consensus 595 ~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~ 673 (973)
..++.|+.|++++|. +..++ .+..+++|++|++++|.++.++ .+.++++|++|++++|. +..+|. .+..++
T Consensus 38 ~~l~~L~~L~l~~~~-----i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-----IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLT 109 (272)
T ss_dssp HHHTTCCEEECTTSC-----CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred ccccceeeeeeCCCC-----ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCc
Confidence 445666666666632 22332 3566666666666666666554 46666666666666665 444443 345666
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCC
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
+|++|++++|......|..++.+++|++|+
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 666666666643322222244444444443
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=2.5e-15 Score=165.50 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=77.8
Q ss_pred ceEEEeCCcccCCCCCchhhHHHHHhhc--ccccEEEecccccccccccccCccccCCCCCcEEEecCCCccc--cchhh
Q 002071 570 MRSLLIGGVVFDHSSLDGNILEELFEEL--TSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEK--LPETL 645 (973)
Q Consensus 570 Lr~L~l~~~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~--Lp~~i 645 (973)
++.+++.++.+ .+..+..+ +.+++|++++|.++ ..+..+..+++|++|+|++|.+.. +|..+
T Consensus 49 ~~~l~l~~~~~---------~~~~~~~~~~~~l~~L~l~~n~l~-----~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 49 WQTLDLTGKNL---------HPDVTGRLLSQGVIAFRCPRSFMD-----QPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 114 (336)
T ss_dssp SSEEECTTCBC---------CHHHHHHHHHTTCSEEECTTCEEC-----SCCCSCCCCBCCCEEECTTCEECHHHHHHHH
T ss_pred heeeccccccC---------CHHHHHhhhhccceEEEcCCcccc-----ccchhhccCCCCCEEEccCCCcCHHHHHHHH
Confidence 45666665542 13335555 88999999995544 345557789999999999998873 78889
Q ss_pred hccccccEEecCCCCCCcccCccccCCCCcceeecCCCC
Q 002071 646 CELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTD 684 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 684 (973)
.++++|++|++++|......|..+..+++|++|++++|.
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 999999999999997444677788889999999999883
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1.8e-16 Score=178.25 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=20.2
Q ss_pred cCCCCCcEEEecCCCccc-----cchhhhccccccEEecCCCC
Q 002071 623 KRLVHLRYLNLSHQSIEK-----LPETLCELYNLQKLDVSDCY 660 (973)
Q Consensus 623 ~~L~~L~~L~Ls~~~i~~-----Lp~~i~~L~~Lq~L~L~~~~ 660 (973)
..+++|++|+|++|.+.. +|..+.++++|++|+|++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 455555555555555443 44455555555555555554
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=4.1e-14 Score=156.39 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=52.2
Q ss_pred ccccccCccccCCCCCcEEEecCCCccccch-hhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCCcc-
Q 002071 613 STILEIPTNVKRLVHLRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLGHM- 689 (973)
Q Consensus 613 ~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~- 689 (973)
..+.++|..+ ..++++|+|++|.|+.+|. .|.+|++|++|+|++|...+.+|. .+.++++|+++...+++.+..+
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 3344566554 3466677777776666664 466667777777776664444553 3456666655433332233333
Q ss_pred cccCCCccccccCCeeeeC
Q 002071 690 PVGIGRLTSLRTLVEFHVS 708 (973)
Q Consensus 690 p~~i~~l~~L~~L~~~~~~ 708 (973)
|..+..+++|+.|++..+.
T Consensus 97 ~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp TTSBCCCTTCCEEEEEEEC
T ss_pred chhhhhccccccccccccc
Confidence 3345566666666655544
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=2.5e-16 Score=188.22 Aligned_cols=235 Identities=15% Similarity=0.132 Sum_probs=141.1
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccc-ccccccccccCccccCCCCCcEEEecCCCccc---
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKL-FYTKSTILEIPTNVKRLVHLRYLNLSHQSIEK--- 640 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~--- 640 (973)
..+++|++|.+.++.+ ....+..+...+++|++|+|++| .++. ..++..+.++++|++|+|++|.++.
T Consensus 102 ~~~~~L~~L~L~~~~~-----~~~~~~~l~~~~~~L~~L~L~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVV-----TDDCLELIAKSFKNFKVLVLSSCEGFST---DGLAAIAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp HHCTTCCEEEEESCBC-----CHHHHHHHHHHCTTCCEEEEESCEEEEH---HHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred HhCCCCCeEEeeCcEE-----cHHHHHHHHHhCCCCcEEeCCCcCCCCH---HHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence 4678999999998754 23344444457899999999986 2221 1144445578999999999998653
Q ss_pred --cchhhhccccccEEecCCCC-CC--cccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCC--
Q 002071 641 --LPETLCELYNLQKLDVSDCY-GL--KELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGV-- 713 (973)
Q Consensus 641 --Lp~~i~~L~~Lq~L~L~~~~-~~--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~-- 713 (973)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|.....+|..+..+++|+.|++..+...-..
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 33334467799999999885 11 123333456799999999998655567777778888888864432210000
Q ss_pred CCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCc
Q 002071 714 GGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNL 793 (973)
Q Consensus 714 ~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L 793 (973)
-...+..+..+++|+.|. +... .. .......+..+++|+.|++++|... ...+...+..+++|
T Consensus 254 ~~~l~~~l~~~~~L~~Ls--~~~~---~~--~~~l~~~~~~~~~L~~L~L~~~~l~----------~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLS--GFWD---AV--PAYLPAVYSVCSRLTTLNLSYATVQ----------SYDLVKLLCQCPKL 316 (594)
T ss_dssp HHHHHHHHHTCTTCCEEE--CCBT---CC--GGGGGGGHHHHTTCCEEECTTCCCC----------HHHHHHHHTTCTTC
T ss_pred HHHHHHHHhcCCCccccc--CCcc---cc--hhhHHHHHHhhCCCCEEEccCCCCC----------HHHHHHHHhcCCCc
Confidence 000011233444444441 1111 11 1222223446789999999988632 22333445667888
Q ss_pred cEEEEeeecCCCCCCCccccccCccEEEEec
Q 002071 794 KELLIGLYRGNTVFPGWMMPLTNLRSLTLEK 824 (973)
Q Consensus 794 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~ 824 (973)
++|++.+|.....++.....+++|+.|+|..
T Consensus 317 ~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 317 QRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred CEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence 8888887732111222233567777777744
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=4.7e-14 Score=151.13 Aligned_cols=124 Identities=16% Similarity=0.090 Sum_probs=69.4
Q ss_pred ccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCCCCcEEEecCCCccccc
Q 002071 564 TCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKLP 642 (973)
Q Consensus 564 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~Lp 642 (973)
+.++++++++.+.++.+. .++.. -.+.|++|+|++|.++ .+ |..+..+.+|++|+|++|.++.+|
T Consensus 6 ~~~l~~l~~l~~~~~~l~------~ip~~---~~~~l~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT------ALPPD---LPKDTTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp EECSTTCCEEECTTSCCS------SCCSC---CCTTCCEEECTTSCCS-----EEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred ccccCCccEEECCCCCCC------cCCCC---CCCCCCEEEcCCCcCC-----ccCHHHhhcCCCCCEEECCCCccCccc
Confidence 345566666666665441 11111 1245666777664432 22 345666667777777776666665
Q ss_pred hhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCC
Q 002071 643 ETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 643 ~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
.. ..+++|++|++++|. +..+|..+..+++|++|++++|......|..++.+++|+.|+
T Consensus 72 ~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp CC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 43 566667777777665 566666666666677776666643222223344444444443
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=2.6e-14 Score=151.94 Aligned_cols=129 Identities=21% Similarity=0.286 Sum_probs=88.7
Q ss_pred ccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccch
Q 002071 564 TCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPE 643 (973)
Q Consensus 564 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~ 643 (973)
...+++|+.|.+.++.+.. ++. +..+++|++|++++|.++ .+ ..++.+++|++|+|++|.++.+|.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-------~~~-l~~l~~L~~L~l~~n~l~-----~~-~~l~~l~~L~~L~L~~n~l~~~~~ 102 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-------VQG-IQYLPNVRYLALGGNKLH-----DI-SALKELTNLTYLILTGNQLQSLPN 102 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECTTSCCC-----CC-GGGTTCTTCCEEECTTSCCCCCCT
T ss_pred cccccceeeeeeCCCCccc-------ccc-cccCCCCcEEECCCCCCC-----Cc-hhhcCCCCCCEEECCCCccCccCh
Confidence 3456778888887766421 111 567888888888885543 33 367788888888888888887764
Q ss_pred h-hhccccccEEecCCCCCCcccCcc-ccCCCCcceeecCCCCCCCcccccCCCccccccCCeeee
Q 002071 644 T-LCELYNLQKLDVSDCYGLKELPQG-IGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHV 707 (973)
Q Consensus 644 ~-i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 707 (973)
. +.++++|++|++++|. +..+|.. +..+++|++|++++|......|..++.+++|+.|++..+
T Consensus 103 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence 4 6788888888888887 5565543 678888888888888543333333566777777665443
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=3.9e-14 Score=151.09 Aligned_cols=206 Identities=21% Similarity=0.179 Sum_probs=148.7
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccccc-hhh
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKLP-ETL 645 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~Lp-~~i 645 (973)
++|++|.++++.+. .+.+..|..+++|++|++++|.+ ..++ ..+.++++|++|+|++|.++.++ ..+
T Consensus 28 ~~l~~L~ls~n~l~------~~~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCCCC------EECTTTTTTCTTCSEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CCccEEECCCCccc------ccCHhHhccccCCcEEECCCCcC-----CccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 57999999998752 23333478899999999999544 3454 47899999999999999998776 679
Q ss_pred hccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCC-cccccCCCccccccCCeeeeCCCCCCCCCCccCccc
Q 002071 646 CELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLG-HMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLES 723 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 723 (973)
.++++|++|++++|. +..++. .+..+++|++|++++|.... .+|..++.+++|++|++..+.... ..+..+..
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~ 171 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS----IYCTDLRV 171 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE----ECGGGGHH
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc----CCHHHhhh
Confidence 999999999999998 666554 68999999999999996644 368889999999999866543322 11223334
Q ss_pred ccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecC
Q 002071 724 LKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRG 803 (973)
Q Consensus 724 l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~ 803 (973)
+.+|+.|.+ .|++++|..... ........+|+.|++++|.+
T Consensus 172 l~~L~~l~l---------------------------~L~ls~n~l~~~------------~~~~~~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 172 LHQMPLLNL---------------------------SLDLSLNPMNFI------------QPGAFKEIRLKELALDTNQL 212 (276)
T ss_dssp HHTCTTCCE---------------------------EEECCSSCCCEE------------CTTSSCSCCEEEEECCSSCC
T ss_pred hhhccccce---------------------------eeecCCCccccc------------CccccCCCcccEEECCCCce
Confidence 444443221 344444433211 01122234899999999998
Q ss_pred CCCCCCc-cccccCccEEEEecCCCCC
Q 002071 804 NTVFPGW-MMPLTNLRSLTLEKCEKCK 829 (973)
Q Consensus 804 ~~~lp~~-~~~l~~L~~L~L~~~~~~~ 829 (973)
+. +|.+ +..+++|+.|+|++|....
T Consensus 213 ~~-~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 213 KS-VPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SC-CCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ee-cCHhHhcccccccEEEccCCcccc
Confidence 88 6654 5789999999999997653
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=3.5e-14 Score=147.79 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=27.5
Q ss_pred CCcEEEecCCCccccch-hhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCC
Q 002071 627 HLRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDK 682 (973)
Q Consensus 627 ~L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~ 682 (973)
+|++|++++|.++.+|. .+.++++|++|++++|..+..+|. .+..+++|++|++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 45555555555554443 344555555555555532434433 344555555555554
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=2.2e-14 Score=155.73 Aligned_cols=229 Identities=14% Similarity=0.088 Sum_probs=143.3
Q ss_pred CCCCceEEEeCCcccCCCCCchhhHHHH--HhhcccccEEEecccccccccccccCccc--cCCCCCcEEEecCCCccc-
Q 002071 566 RIKRMRSLLIGGVVFDHSSLDGNILEEL--FEELTSLRAIEVSKLFYTKSTILEIPTNV--KRLVHLRYLNLSHQSIEK- 640 (973)
Q Consensus 566 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~--~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i--~~L~~L~~L~Ls~~~i~~- 640 (973)
+..+++.+.+.+..+. ......+ +..++.|++|++++|.+++ ..|..+ +.+.+|++|+|++|.+..
T Consensus 62 ~~~~l~~l~l~~~~~~-----~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 132 (310)
T 4glp_A 62 KALRVRRLTVGAAQVP-----AQLLVGALRVLAYSRLKELTLEDLKITG----TMPPLPLEATGLALSSLRLRNVSWATG 132 (310)
T ss_dssp SSCCCCEEEECSCCCB-----HHHHHHHHHHHHHSCCCEEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred hhcceeEEEEeCCcCC-----HHHHHHHHHhcccCceeEEEeeCCEecc----chhhhhhhccCCCCCEEEeecccccch
Confidence 3445777877776532 2222222 2345679999999965543 356666 889999999999999884
Q ss_pred cc----hhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCc--cc--ccCCCccccccCCeeeeCCCCC
Q 002071 641 LP----ETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGH--MP--VGIGRLTSLRTLVEFHVSGGGG 712 (973)
Q Consensus 641 Lp----~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~~~~~~~~~~ 712 (973)
.| ..+..+++|++|++++|......|..+..+++|++|++++|..... ++ ..++.+++|++|++..+...
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-- 210 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-- 210 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--
T ss_pred hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--
Confidence 22 3456799999999999984334456788999999999999954321 22 12245555555554332211
Q ss_pred CCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCC
Q 002071 713 VGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLN 792 (973)
Q Consensus 713 ~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 792 (973)
.........+..+++|+.|+|++|......+ ..+..+..+++
T Consensus 211 ------------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~~~~~~~ 252 (310)
T 4glp_A 211 ------------------------------TPTGVCAALAAAGVQPHSLDLSHNSLRATVN--------PSAPRCMWSSA 252 (310)
T ss_dssp ------------------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC--------SCCSSCCCCTT
T ss_pred ------------------------------chHHHHHHHHhcCCCCCEEECCCCCCCccch--------hhHHhccCcCc
Confidence 1111111112345566666666665432200 00112223368
Q ss_pred ccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceeccc
Q 002071 793 LKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWG 847 (973)
Q Consensus 793 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 847 (973)
|++|++++|.++. +|.++. ++|+.|+|++|.+. .+|.+..+++|+.|+|.+
T Consensus 253 L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 253 LNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLN-RAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp CCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCC-SCCCTTSCCCCSCEECSS
T ss_pred CCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCC-CCchhhhCCCccEEECcC
Confidence 8888888888776 777664 78888888888765 346677778888888876
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=2.4e-15 Score=169.10 Aligned_cols=249 Identities=17% Similarity=0.067 Sum_probs=168.2
Q ss_pred HHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcc----ccchhh-------hccccccEEecCCCC
Q 002071 592 ELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE----KLPETL-------CELYNLQKLDVSDCY 660 (973)
Q Consensus 592 ~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~----~Lp~~i-------~~L~~Lq~L~L~~~~ 660 (973)
..+..+++|++|+|++|.++......++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 347788999999999977765444446666888999999999997554 345444 688999999999998
Q ss_pred CCc----ccCccccCCCCcceeecCCCCCCCccc----ccCCCc---------cccccCCeeeeCCCCCCCCCCccCccc
Q 002071 661 GLK----ELPQGIGKLVNMKHLLDDKTDSLGHMP----VGIGRL---------TSLRTLVEFHVSGGGGVGGSNACRLES 723 (973)
Q Consensus 661 ~~~----~lp~~i~~L~~L~~L~l~~~~~~~~~p----~~i~~l---------~~L~~L~~~~~~~~~~~~~~~~~~l~~ 723 (973)
... .+|..+..+++|++|++++|......+ ..+..+ ++|++|++..+.........+...+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 333 377788889999999999986532222 223333 788888766654432100000123456
Q ss_pred ccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecC
Q 002071 724 LKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRG 803 (973)
Q Consensus 724 l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~ 803 (973)
+++|+.|++.++..... .........+..+++|+.|+|++|.... .....+...+..+++|+.|+|++|.+
T Consensus 186 ~~~L~~L~L~~n~l~~~--g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-------~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPE--GIEHLLLEGLAYCQELKVLDLQDNTFTH-------LGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp CTTCCEEECCSSCCCHH--HHHHHHHTTGGGCTTCCEEECCSSCCHH-------HHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred CCCcCEEECcCCCCCHh--HHHHHHHHHhhcCCCccEEECcCCCCCc-------HHHHHHHHHHccCCCcCEEECCCCCC
Confidence 67777777766643100 0011122266788999999999886521 12244566778889999999999987
Q ss_pred CCC----CCCccc--cccCccEEEEecCCCCC----cCCC-C-CCcCcccceeccccc
Q 002071 804 NTV----FPGWMM--PLTNLRSLTLEKCEKCK----QIPP-L-GKLSSLEKLMIWGLK 849 (973)
Q Consensus 804 ~~~----lp~~~~--~l~~L~~L~L~~~~~~~----~l~~-l-~~l~~L~~L~L~~~~ 849 (973)
... +|.++. .+++|+.|+|++|.+.. .+|. + .++|+|+.|+|.++.
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 652 355553 38999999999998766 3554 4 568999999998843
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=1.5e-13 Score=148.73 Aligned_cols=192 Identities=19% Similarity=0.210 Sum_probs=125.0
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchh
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPET 644 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~ 644 (973)
..+++|++|.+.++.+. .+ +. +..+++|++|++++|. +..++. +..+++|++|+|++|.++.+| .
T Consensus 38 ~~l~~L~~L~l~~~~i~------~l-~~-~~~l~~L~~L~L~~n~-----i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~ 102 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT------TI-EG-VQYLNNLIGLELKDNQ-----ITDLAP-LKNLTKITELELSGNPLKNVS-A 102 (308)
T ss_dssp HHHHTCCEEECTTSCCC------CC-TT-GGGCTTCCEEECCSSC-----CCCCGG-GTTCCSCCEEECCSCCCSCCG-G
T ss_pred HHcCCcCEEEeeCCCcc------Cc-hh-hhccCCCCEEEccCCc-----CCCChh-HccCCCCCEEEccCCcCCCch-h
Confidence 45678888888877642 11 22 6778888899988844 444555 888888999999888888876 5
Q ss_pred hhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccc
Q 002071 645 LCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESL 724 (973)
Q Consensus 645 i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l 724 (973)
+.++++|++|++++|. +..+|. +..+++|++|++++|.. ..++. ++.+++|+.|++..+.... .+. +
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-----~~~-l--- 169 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSD-----LTP-L--- 169 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCC-----CGG-G---
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCC-----Chh-h---
Confidence 8888889999998887 677765 88888899998888854 34443 6666677766544332221 000 2
Q ss_pred cCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCC
Q 002071 725 KNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGN 804 (973)
Q Consensus 725 ~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~ 804 (973)
..+++|+.|++++|..... ..+..+++|+.|++++|.+.
T Consensus 170 ----------------------------~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 170 ----------------------------ANLSKLTTLKADDNKISDI-------------SPLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp ----------------------------TTCTTCCEEECCSSCCCCC-------------GGGGGCTTCCEEECTTSCCC
T ss_pred ----------------------------cCCCCCCEEECCCCccCcC-------------hhhcCCCCCCEEEccCCccC
Confidence 2334455555554443211 01344566777777777666
Q ss_pred CCCCCccccccCccEEEEecCCC
Q 002071 805 TVFPGWMMPLTNLRSLTLEKCEK 827 (973)
Q Consensus 805 ~~lp~~~~~l~~L~~L~L~~~~~ 827 (973)
. ++ .+..+++|+.|+|++|..
T Consensus 209 ~-~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 209 D-VS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp B-CG-GGTTCTTCCEEEEEEEEE
T ss_pred c-cc-cccCCCCCCEEEccCCee
Confidence 5 44 256677777777777754
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=2.8e-13 Score=146.98 Aligned_cols=229 Identities=17% Similarity=0.097 Sum_probs=146.6
Q ss_pred cceEEEEEEccCCCC--C--CccccCCCCceEEEeCCcccCCCCCchhhHHHHH-hhcccccEEEecccccccccccccC
Q 002071 545 EKVCHLMLSIHEGAP--F--PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELF-EELTSLRAIEVSKLFYTKSTILEIP 619 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~--~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~~~~~~~~~lp 619 (973)
..++++.+....... + ......+++|+.|.+.++.+.. ..+..++ ..+++|++|++++|.++.. ...++
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITG-----TMPPLPLEATGLALSSLRLRNVSWATG-RSWLA 137 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS-----CCCCCSSSCCCBCCSSCEEESCCCSST-TSSHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEecc-----chhhhhhhccCCCCCEEEeecccccch-hhhhH
Confidence 346677766554321 0 0112345679999999987532 1112212 7889999999999776531 11121
Q ss_pred -ccccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcc--cC--ccccCCCCcceeecCCCCCCCccccc-
Q 002071 620 -TNVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKE--LP--QGIGKLVNMKHLLDDKTDSLGHMPVG- 692 (973)
Q Consensus 620 -~~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~--lp--~~i~~L~~L~~L~l~~~~~~~~~p~~- 692 (973)
..+..+++|++|+|++|.+..+| ..++++++|++|+|++|..... ++ ..+..+++|++|++++|.. ..+|..
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~ 216 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVC 216 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHH
T ss_pred HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHH
Confidence 34567999999999999998665 6789999999999999984321 33 2346899999999999954 333432
Q ss_pred ---CCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCC
Q 002071 693 ---IGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEE 769 (973)
Q Consensus 693 ---i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 769 (973)
++.+++|++|++..+..... .+..+.. +...++|+.|+|++|...
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~----~p~~~~~----------------------------~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRAT----VNPSAPR----------------------------CMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCC----CCSCCSS----------------------------CCCCTTCCCEECCSSCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCcc----chhhHHh----------------------------ccCcCcCCEEECCCCCCC
Confidence 34556666665444332221 0111111 112256677777666543
Q ss_pred CCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCC
Q 002071 770 EDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKC 828 (973)
Q Consensus 770 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 828 (973)
.. +..+ +++|+.|++++|.+++ +|. +..+++|+.|+|++|.+.
T Consensus 265 ~l------------p~~~--~~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 265 QV------------PKGL--PAKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SC------------CSCC--CSCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTS
T ss_pred ch------------hhhh--cCCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCC
Confidence 21 1122 2689999999998887 665 577899999999998764
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.45 E-value=3.1e-13 Score=144.73 Aligned_cols=196 Identities=20% Similarity=0.179 Sum_probs=133.2
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccCccccCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELPQGIGKL 672 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L 672 (973)
+..+++|+.+++++ ..+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. ..+
T Consensus 6 ~~~l~~l~~l~~~~-----~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-----RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTL 76 (290)
T ss_dssp EECSTTCCEEECTT-----SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCC
T ss_pred ccccCCccEEECCC-----CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCC
Confidence 45678899999998 55566887664 6899999999999876 4679999999999999997 7777764 789
Q ss_pred CCcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhc
Q 002071 673 VNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLEL 752 (973)
Q Consensus 673 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l 752 (973)
++|++|++++|. +..+|..+..+++|+.|++..+.... ..+..+..+
T Consensus 77 ~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~----l~~~~~~~l---------------------------- 123 (290)
T 1p9a_G 77 PVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTS----LPLGALRGL---------------------------- 123 (290)
T ss_dssp TTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCC----CCSSTTTTC----------------------------
T ss_pred CcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcc----cCHHHHcCC----------------------------
Confidence 999999999984 45777777778888877655443322 112223334
Q ss_pred cCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCC-ccccccCccEEEEecCCCCCcC
Q 002071 753 DKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPG-WMMPLTNLRSLTLEKCEKCKQI 831 (973)
Q Consensus 753 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l 831 (973)
++|+.|+|++|..... ....+..+++|+.|++++|.++. +|. .+..+++|+.|+|++|.+.. +
T Consensus 124 ---~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~-i 187 (290)
T 1p9a_G 124 ---GELQELYLKGNELKTL-----------PPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT-I 187 (290)
T ss_dssp ---TTCCEEECTTSCCCCC-----------CTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCCC-C
T ss_pred ---CCCCEEECCCCCCCcc-----------ChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCCc-c
Confidence 4444444444433211 01123455667777777777666 544 34567777777777776553 4
Q ss_pred CC-CCCcCcccceeccc
Q 002071 832 PP-LGKLSSLEKLMIWG 847 (973)
Q Consensus 832 ~~-l~~l~~L~~L~L~~ 847 (973)
|. +..+++|+.|.|.+
T Consensus 188 p~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CTTTTTTCCCSEEECCS
T ss_pred ChhhcccccCCeEEeCC
Confidence 43 66666777777765
No 97
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=3.8e-13 Score=142.71 Aligned_cols=178 Identities=25% Similarity=0.255 Sum_probs=109.6
Q ss_pred ccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccccchh-hhccccccEEecCCCCCCcccCc-cccCCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKLPET-LCELYNLQKLDVSDCYGLKELPQ-GIGKLVN 674 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~Lp~~-i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~ 674 (973)
+.|+.|++++|.+ ..+| ..+.++++|++|+|++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++
T Consensus 37 ~~l~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSNKL-----SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSSCC-----SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSS
T ss_pred CCCCEEECcCCCC-----CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccC
Confidence 4577777777433 3344 3567777777777777777766654 3667777777777776 555554 3466777
Q ss_pred cceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccC
Q 002071 675 MKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDK 754 (973)
Q Consensus 675 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~ 754 (973)
|++|++++|......|..++.+++|++|++..+.... ++. ..+..
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------------------~~~------~~~~~ 155 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-----------------------------LPK------GVFDK 155 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------------CCT------TTTTT
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-----------------------------cCH------hHccC
Confidence 7777777764433333334555555555443322111 110 02344
Q ss_pred CCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCC-ccccccCccEEEEecCCCC
Q 002071 755 MKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPG-WMMPLTNLRSLTLEKCEKC 828 (973)
Q Consensus 755 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~ 828 (973)
+++|+.|+++.|...... ...+..+++|+.|++++|.+.. +|. .+..+++|+.|+|++|...
T Consensus 156 l~~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVP-----------EGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTCCEEECCSSCCSCCC-----------TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcccceeEecCCcCcEeC-----------hhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCee
Confidence 556666666665443210 1235567889999999998887 554 5778999999999998753
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=2.9e-15 Score=165.04 Aligned_cols=227 Identities=14% Similarity=0.121 Sum_probs=148.9
Q ss_pred cccccEEEecccccccccccccCccccCC--CCCcEEEecCCCccccchhhhccccccEEecCCCCCCcc-cCccccCCC
Q 002071 597 LTSLRAIEVSKLFYTKSTILEIPTNVKRL--VHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKE-LPQGIGKLV 673 (973)
Q Consensus 597 l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L--~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~-lp~~i~~L~ 673 (973)
-..++.|+++++.+. |..+..+ .++++|++++|.+...+..+.++++|++|++++|..... +|..+..++
T Consensus 46 ~~~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp STTSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred chhheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 345788888875432 3445555 788888888888876666677888888888888873223 777778888
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhcc
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELD 753 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~ 753 (973)
+|++|++++|......|..++.+++|++|++ .++..+. .......+.
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L----------------------------~~~~~l~-----~~~l~~~~~ 165 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL----------------------------SGCSGFS-----EFALQTLLS 165 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEEC----------------------------TTCBSCC-----HHHHHHHHH
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEEC----------------------------CCCCCCC-----HHHHHHHHh
Confidence 8888888888544344555555555555543 3221111 011222355
Q ss_pred CCCCCCcEEEEec-CCCCCCCCCCcchHHHHHhhcCCCC-CccEEEEeeec--CC-CCCCCccccccCccEEEEecCCC-
Q 002071 754 KMKYLSCLRLWFD-KEEEDGGRRKEEDDQQLLEALQPPL-NLKELLIGLYR--GN-TVFPGWMMPLTNLRSLTLEKCEK- 827 (973)
Q Consensus 754 ~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~L~~~~--~~-~~lp~~~~~l~~L~~L~L~~~~~- 827 (973)
.+++|+.|++++| ... ...+...+..++ +|++|++++|. ++ ..+|..+..+++|+.|+|++|..
T Consensus 166 ~~~~L~~L~l~~~~~l~----------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFT----------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp HCTTCCEEECCCCTTCC----------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred cCCCCCEEcCCCCCCcC----------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC
Confidence 6778888888887 432 122344455667 99999999984 33 22566677899999999999983
Q ss_pred CC-cCCCCCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccc
Q 002071 828 CK-QIPPLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWM 877 (973)
Q Consensus 828 ~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~ 877 (973)
.. .++.++.+++|++|+|.+|..+.. ..+.. ...+++|+.|++.++
T Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~--l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 236 KNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLLE--LGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTCTTCCG--GGGGG--GGGCTTCCEEECTTS
T ss_pred CHHHHHHHhCCCCCCEeeCCCCCCCCH--HHHHH--HhcCCCCCEEeccCc
Confidence 33 344588889999999998763321 11111 124788888888776
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=8.8e-13 Score=145.66 Aligned_cols=245 Identities=13% Similarity=0.058 Sum_probs=153.0
Q ss_pred ccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCCccccc-CCCcccc
Q 002071 622 VKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLGHMPVG-IGRLTSL 699 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L 699 (973)
++.+. -+.++.++++++.+|..+ ..+|++|+|++|. +..+|. .+..+++|++|++++|.....+|.+ +.++++|
T Consensus 6 ~C~C~-~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 6 ICHCS-NRVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp SSEEE-TTEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred ccEee-CCEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 34443 367888899999999876 4689999999998 889986 5789999999999999776767654 5777777
Q ss_pred ccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcch
Q 002071 700 RTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEED 779 (973)
Q Consensus 700 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 779 (973)
+.+...... .+....+..+..+++|+.|++.++.... ++.. ......++..|++..+......
T Consensus 82 ~~~l~~~~N---~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~------~~~~~~~l~~l~l~~~~~i~~l------- 144 (350)
T 4ay9_X 82 HEIRIEKAN---NLLYINPEAFQNLPNLQYLLISNTGIKH-LPDV------HKIHSLQKVLLDIQDNINIHTI------- 144 (350)
T ss_dssp CEEEEEEET---TCCEECTTSBCCCTTCCEEEEEEECCSS-CCCC------TTCCBSSCEEEEEESCTTCCEE-------
T ss_pred hhhhcccCC---cccccCchhhhhcccccccccccccccc-CCch------hhcccchhhhhhhccccccccc-------
Confidence 654333221 1112224456777778777777665432 2210 1122334445555443211100
Q ss_pred HHHHHhhcCCC-CCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC--CCCcCcccceeccccccceeeCc
Q 002071 780 DQQLLEALQPP-LNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP--LGKLSSLEKLMIWGLKSVKRVAN 856 (973)
Q Consensus 780 ~~~~l~~l~~~-~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~ 856 (973)
....+... ..++.|++++|.++. +|.......+|+.|.+.++...+.+|. ++.+++|+.|+|++ +
T Consensus 145 ---~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~--------N 212 (350)
T 4ay9_X 145 ---ERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR--------T 212 (350)
T ss_dssp ---CTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT--------S
T ss_pred ---cccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC--------C
Confidence 00112222 357777787777776 666655566777777776665666665 67778888888876 3
Q ss_pred ccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeecc
Q 002071 857 EFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIIS 906 (973)
Q Consensus 857 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~ 906 (973)
.+.......|.+|+.|...++.+++.++. ...+++|+.+++.+
T Consensus 213 ~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 RIHSLPSYGLENLKKLRARSTYNLKKLPT-------LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCCSSSCTTCCEEECTTCTTCCCCCC-------TTTCCSCCEEECSC
T ss_pred CcCccChhhhccchHhhhccCCCcCcCCC-------chhCcChhhCcCCC
Confidence 33333334577777777777666665542 23567777777654
No 100
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=4.2e-11 Score=134.49 Aligned_cols=298 Identities=14% Similarity=0.031 Sum_probs=186.1
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~ 260 (973)
+..++||+.+++++.+++........+..+.+.|+|++|+||||||+.+++. ..... ..++|+.++...+...+...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999886531101223348999999999999999999874 33221 35678888888888899999
Q ss_pred HHHHhcCCCCC-CCcHHHHHHHHHHHhc--CCcEEEEEecCCCCCccChhhHHhhhcCCC----CCcEEEEEcCChHHHH
Q 002071 261 IVEALDVSSSG-LGEFQSLLKTISKSIT--GKRFFLVLDDVWDGDYMKWEPFYHCLKNGL----PESKILVTTRKESVAF 333 (973)
Q Consensus 261 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~----~gs~iivTtr~~~v~~ 333 (973)
++..++..... .....++.+.+.+.+. +++.+||||+++..+......+...+.... .+..||++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988754322 2345566666666653 668999999998765444555555543211 4678888887764433
Q ss_pred HhC-------CCCeeeCCCCCHHHHHHHHHHHhccCC-CcccchhHHHHHHHHHHhc---------CCchHHHHHHHhh-
Q 002071 334 MMG-------STDIIPVQELAEEECWLLFNRIAFFGR-PIEECVKLEKIGRKIAGKC---------RGLPLTTKAIGSL- 395 (973)
Q Consensus 334 ~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c---------~GlPLai~~~~~~- 395 (973)
.+. ....+.+.+++.++..+++...+.... ..... .+....|++.+ .|.|-.+..+...
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 221 123699999999999999988754210 11111 34567788888 7887544333222
Q ss_pred hc-----CC--CCHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhcCcC---CCceeCHHHHHHHHHH
Q 002071 396 MR-----SK--KTEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFP---KDFNIEKERLITLWMA 465 (973)
Q Consensus 396 l~-----~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp---~~~~i~~~~li~~wia 465 (973)
.. .. -+.+....+..... ...+.-.+..|+.+.+.++..++.+. .+-.+....+...+-.
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 11 11 13333333322110 11223345678888888877777654 2224566666555433
Q ss_pred ----cCCCCCCCCCcHHHHHHHHHHHHHhccccccccc
Q 002071 466 ----QGYLGVEQDEETNIIGEEYFNILATRSFFQEFKK 499 (973)
Q Consensus 466 ----~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 499 (973)
.|... -.......++++|...+++.....
T Consensus 321 ~~~~~~~~~-----~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 321 VCEEYGERP-----RVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHTTCCC-----CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHcCCCC-----CCHHHHHHHHHHHHhCCCeEEeee
Confidence 23111 112446688999999999987654
No 101
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=2.7e-11 Score=136.06 Aligned_cols=296 Identities=14% Similarity=0.029 Sum_probs=181.5
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh----ccCceEEEEEeCccccHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN----RKFDKILWVCVSEAFEEFRI 257 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~ 257 (973)
+..++||+.+++++.+++..... ....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 46799999999999998854311 2345689999999999999999998742111 11235678888888888899
Q ss_pred HHHHHHHhcCCCCC-CCcHHHHHHHHHHHh--cCCcEEEEEecCCCCCcc--ChhhHHhhhcCC-----CCCcEEEEEcC
Q 002071 258 ARAIVEALDVSSSG-LGEFQSLLKTISKSI--TGKRFFLVLDDVWDGDYM--KWEPFYHCLKNG-----LPESKILVTTR 327 (973)
Q Consensus 258 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~--~w~~l~~~l~~~-----~~gs~iivTtr 327 (973)
+..++.+++...+. .....++...+.+.+ .+++.+||||+++..... ..+.+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999999764322 233556666666666 356899999999764322 123333333211 34567888887
Q ss_pred ChHH--------HHHhCCCCeeeCCCCCHHHHHHHHHHHhccC-CCcccchhHHHHHHHHHHhcC---CchH-HHHHHHh
Q 002071 328 KESV--------AFMMGSTDIIPVQELAEEECWLLFNRIAFFG-RPIEECVKLEKIGRKIAGKCR---GLPL-TTKAIGS 394 (973)
Q Consensus 328 ~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~ 394 (973)
.... ...+. ...+.+.+++.++..+++.+.+... ...... .++...+++.++ |.|- |+..+..
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6522 11111 1478999999999999999875320 111112 223456777776 9994 3333322
Q ss_pred hhc-----C--CCCHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhc-CcCCCceeCHHHHHHHHHH-
Q 002071 395 LMR-----S--KKTEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCA-VFPKDFNIEKERLITLWMA- 465 (973)
Q Consensus 395 ~l~-----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~-~fp~~~~i~~~~li~~wia- 465 (973)
+.. . .-+.+.+..++..... ..+.-++..|+.+.+..+..++ ++-....+...++.+....
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIER----------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 221 1 1256666665543211 1244567788888877766665 3322224555544443222
Q ss_pred ---cCCCCCCCCCcHHHHHHHHHHHHHhcccccccc
Q 002071 466 ---QGYLGVEQDEETNIIGEEYFNILATRSFFQEFK 498 (973)
Q Consensus 466 ---~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 498 (973)
.| +. .........+++.|...|+++...
T Consensus 322 ~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 23 11 112356678999999999998754
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=7.3e-13 Score=141.96 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=56.8
Q ss_pred hhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCC
Q 002071 595 EELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVN 674 (973)
Q Consensus 595 ~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~ 674 (973)
..++.|+.|++++| .+..+| .+..+++|++|++++|.++.++. +.++++|++|++++|. +..+|. +..+++
T Consensus 43 ~~l~~L~~L~l~~~-----~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 43 NELNSIDQIIANNS-----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKK 113 (291)
T ss_dssp HHHHTCCEEECTTS-----CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTT
T ss_pred hhcCcccEEEccCC-----CcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCC
Confidence 45667777777774 333444 36777778888887777777766 7777778888887776 665554 777777
Q ss_pred cceeecCCCC
Q 002071 675 MKHLLDDKTD 684 (973)
Q Consensus 675 L~~L~l~~~~ 684 (973)
|++|++++|.
T Consensus 114 L~~L~L~~n~ 123 (291)
T 1h6t_A 114 LKSLSLEHNG 123 (291)
T ss_dssp CCEEECTTSC
T ss_pred CCEEECCCCc
Confidence 7777777773
No 103
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=3.7e-11 Score=134.66 Aligned_cols=297 Identities=12% Similarity=-0.013 Sum_probs=180.9
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh----cc--CceEEEEEeCccc-cH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN----RK--FDKILWVCVSEAF-EE 254 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~s~~~-~~ 254 (973)
+..++||+.+++++.+++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988754211 2245689999999999999999998842111 01 3456788877777 88
Q ss_pred HHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhH-HhhhcCCCCCcEEEEEcCChHH
Q 002071 255 FRIARAIVEALDVSSS--GLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPF-YHCLKNGLPESKILVTTRKESV 331 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l-~~~l~~~~~gs~iivTtr~~~v 331 (973)
..++..++.++..... .......+...+.+.+..++.+|||||++......+..+ ...+.....+..+|+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 8888999888843221 123345667777788877666999999976433222222 3333322267889999986531
Q ss_pred ----HHHh--CCCCeeeCCCCCHHHHHHHHHHHhccC-CCcccchhHHHHHHHHHHhcC---CchH-HHHHHHhh--hc-
Q 002071 332 ----AFMM--GSTDIIPVQELAEEECWLLFNRIAFFG-RPIEECVKLEKIGRKIAGKCR---GLPL-TTKAIGSL--MR- 397 (973)
Q Consensus 332 ----~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~--l~- 397 (973)
...+ .....+.+.+++.++..++|...+... .....+ .+....+++.|+ |.|. |+..+-.. ++
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1111 112389999999999999999875321 111112 233456677776 8886 44433322 22
Q ss_pred --CCCCHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhcCcCCCceeCHHHHHHHHHHcCCCCCCCCC
Q 002071 398 --SKKTEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPKDFNIEKERLITLWMAQGYLGVEQDE 475 (973)
Q Consensus 398 --~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~ 475 (973)
..-+.+.+..++.... ...+.-++..|+.+.+..+..++....+-.+. +......-..| +. .
T Consensus 254 ~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~----~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK----P 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----C
T ss_pred CCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----C
Confidence 1236777776665421 12355667888888887777666511101110 11111111122 11 1
Q ss_pred cHHHHHHHHHHHHHhccccccccc
Q 002071 476 ETNIIGEEYFNILATRSFFQEFKK 499 (973)
Q Consensus 476 ~~~~~~~~~~~~L~~~~ll~~~~~ 499 (973)
........+++.|...++++....
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEec
Confidence 123456788999999999987543
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.38 E-value=6.8e-13 Score=138.00 Aligned_cols=94 Identities=15% Similarity=0.239 Sum_probs=62.9
Q ss_pred cccEEEecccccccccccccCc-cccCCCCCcEEEecCCC-ccccch-hhhccccccEEecCC-CCCCcccCc-cccCCC
Q 002071 599 SLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQS-IEKLPE-TLCELYNLQKLDVSD-CYGLKELPQ-GIGKLV 673 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~-i~~Lp~-~i~~L~~Lq~L~L~~-~~~~~~lp~-~i~~L~ 673 (973)
.|++|++++| .+..+|. .+..+++|++|++++|. ++.+|. .+.++++|++|++++ |. +..+|. .+..++
T Consensus 32 ~l~~L~l~~n-----~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIET-----HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESC-----CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCT
T ss_pred cccEEEEeCC-----cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCC
Confidence 6777888774 3344544 57778888888888886 777664 577788888888877 44 666653 566778
Q ss_pred CcceeecCCCCCCCcccccCCCccccc
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLR 700 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~ 700 (973)
+|++|++++|.. ..+|. ++.+++|+
T Consensus 106 ~L~~L~l~~n~l-~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 106 LLKFLGIFNTGL-KMFPD-LTKVYSTD 130 (239)
T ss_dssp TCCEEEEEEECC-CSCCC-CTTCCBCC
T ss_pred CCCEEeCCCCCC-ccccc-cccccccc
Confidence 888888877743 33554 44444444
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=1.2e-12 Score=153.90 Aligned_cols=172 Identities=20% Similarity=0.212 Sum_probs=101.0
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLV 673 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~ 673 (973)
+..++.|+.|++++| .+..+| .+..|++|++|+|++|.+..+|. +..+++|++|+|++|. +..+| .+..++
T Consensus 39 ~~~L~~L~~L~l~~n-----~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTC-----CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCT
T ss_pred hhcCCCCCEEECcCC-----CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCC
Confidence 345666777777773 333444 46777777777777777776665 7777777777777775 55555 467777
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhcc
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELD 753 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~ 753 (973)
+|++|++++|... .+ ..++.+++|+.|+ +.++.... + ..+.
T Consensus 110 ~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~----------------------------Ls~N~l~~-l--------~~l~ 150 (605)
T 1m9s_A 110 KLKSLSLEHNGIS-DI-NGLVHLPQLESLY----------------------------LGNNKITD-I--------TVLS 150 (605)
T ss_dssp TCCEEECTTSCCC-CC-GGGGGCTTCSEEE----------------------------CCSSCCCC-C--------GGGG
T ss_pred CCCEEEecCCCCC-CC-ccccCCCccCEEE----------------------------CCCCccCC-c--------hhhc
Confidence 7777777776432 22 2244444444443 32222111 0 1244
Q ss_pred CCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCC
Q 002071 754 KMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKC 828 (973)
Q Consensus 754 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 828 (973)
.+++|+.|+|+.|..... ..+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~-------------~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDI-------------VPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp SCTTCSEEECCSSCCCCC-------------GGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEE
T ss_pred ccCCCCEEECcCCcCCCc-------------hhhccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCc
Confidence 556666666666544321 014556677777777777665 43 4666777777777777543
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=2.6e-14 Score=158.87 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=50.6
Q ss_pred HHHHHhhcccccEEEecccccccccccccCccccCCC-CCcEEEecCCCcccc-chhhhcc-----ccccEEecCCCCCC
Q 002071 590 LEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLV-HLRYLNLSHQSIEKL-PETLCEL-----YNLQKLDVSDCYGL 662 (973)
Q Consensus 590 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~-~L~~L~Ls~~~i~~L-p~~i~~L-----~~Lq~L~L~~~~~~ 662 (973)
++.++...+.|++|+|++|.++......+...+..++ +|++|+|++|.+... +..+..+ ++|++|+|++|. +
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-C
Confidence 4444455555666666665444322222224555566 666666666666543 3445554 666666666665 4
Q ss_pred ccc-Ccc----ccCC-CCcceeecCCCCC
Q 002071 663 KEL-PQG----IGKL-VNMKHLLDDKTDS 685 (973)
Q Consensus 663 ~~l-p~~----i~~L-~~L~~L~l~~~~~ 685 (973)
... +.. +..+ ++|++|++++|..
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 332 222 3333 5666666666643
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=7e-12 Score=131.33 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=65.6
Q ss_pred cccEEEecccccccccccccCccccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccC-ccccCCCCcc
Q 002071 599 SLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELP-QGIGKLVNMK 676 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~ 676 (973)
..+++++++ ..+..+|..+. .+|++|+|++|.+..++ ..+.++++|++|+|++|. +..++ ..+..+++|+
T Consensus 15 ~~~~l~~~~-----~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQG-----KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTT-----CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred CCeEEecCC-----CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCC
Confidence 467788887 45556776664 57888888888887665 457888888888888887 55444 4467888888
Q ss_pred eeecCCCCCCCcccccCCCccccccCC
Q 002071 677 HLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 677 ~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
+|++++|......+..++.+++|++|+
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcccccChhHhcccCCCCEEE
Confidence 888888754332223345555555554
No 108
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=5.8e-11 Score=133.19 Aligned_cols=296 Identities=15% Similarity=0.101 Sum_probs=175.9
Q ss_pred CCCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC---ceEEEEEeCccccHHHH
Q 002071 181 DEEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF---DKILWVCVSEAFEEFRI 257 (973)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~ 257 (973)
.+..++||+.+++++.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 346799999999999998864311 234568999999999999999999884 33332 35678887777777888
Q ss_pred HHHHHHHhcCCCC-CCCcHHHHHHHHHHHhc--CCcEEEEEecCCCCC----ccChhhHHhhhcC-CCCCcEEEEEcCCh
Q 002071 258 ARAIVEALDVSSS-GLGEFQSLLKTISKSIT--GKRFFLVLDDVWDGD----YMKWEPFYHCLKN-GLPESKILVTTRKE 329 (973)
Q Consensus 258 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~----~~~w~~l~~~l~~-~~~gs~iivTtr~~ 329 (973)
+..++.+++.... ...+..+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 8888888765432 12235555566666654 458999999997632 1222333333322 23456778888765
Q ss_pred HHHHHhC-------CCCeeeCCCCCHHHHHHHHHHHhccCC-CcccchhHHHHHHHHHHhcC---CchHHH-HHHHhhhc
Q 002071 330 SVAFMMG-------STDIIPVQELAEEECWLLFNRIAFFGR-PIEECVKLEKIGRKIAGKCR---GLPLTT-KAIGSLMR 397 (973)
Q Consensus 330 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c~---GlPLai-~~~~~~l~ 397 (973)
.....+. ....+.+.+++.++.++++.+.+.... ..... .++...+++.++ |.|..+ .++.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4322211 124799999999999999998653111 11111 334556666666 999743 33322211
Q ss_pred -----C--CCCHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhcCcCC-C-ceeCHHHHHHHH--HH-
Q 002071 398 -----S--KKTEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCAVFPK-D-FNIEKERLITLW--MA- 465 (973)
Q Consensus 398 -----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~-~-~~i~~~~li~~w--ia- 465 (973)
. .-+.+.+..++.... ...+.-++..+|...+..+..++.+.+ + ..+...++.+.. ++
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 125566655544321 123445567788887777766663222 1 123343332222 11
Q ss_pred -cCCCCCCCCCcHHHHHHHHHHHHHhcccccccc
Q 002071 466 -QGYLGVEQDEETNIIGEEYFNILATRSFFQEFK 498 (973)
Q Consensus 466 -~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 498 (973)
-| +.. ........+++.|...|+++...
T Consensus 321 ~~g-~~~----~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 321 KLG-VEA----VTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHT-CCC----CCHHHHHHHHHHHHHHTSEEEEE
T ss_pred hcC-CCC----CCHHHHHHHHHHHHhCCCEEEEe
Confidence 12 111 11234667899999999998653
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=4.2e-12 Score=147.60 Aligned_cols=186 Identities=18% Similarity=0.158 Sum_probs=115.3
Q ss_pred cccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCccee
Q 002071 599 SLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHL 678 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L 678 (973)
+|++|++++|. +..+|..+. .+|++|+|++|.|+.+| ..+++|++|++++|. +..+|. +.. +|++|
T Consensus 60 ~L~~L~Ls~n~-----L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLN-----LSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSC-----CSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEE
T ss_pred CccEEEeCCCC-----CCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEE
Confidence 89999999854 445777663 78999999999998888 567899999999987 777887 655 89999
Q ss_pred ecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCC
Q 002071 679 LDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYL 758 (973)
Q Consensus 679 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L 758 (973)
++++|.. ..+|. .+++|+.|++..+.... ++. .+++|+.|++.+|... .++. +. ++|
T Consensus 126 ~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~-~lp~--------l~--~~L 182 (571)
T 3cvr_A 126 DVDNNQL-TMLPE---LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLT-FLPE--------LP--ESL 182 (571)
T ss_dssp ECCSSCC-SCCCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCS-CCCC--------CC--TTC
T ss_pred ECCCCcC-CCCCC---cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCC-Ccch--------hh--CCC
Confidence 9998854 44666 56777777665544332 121 3455666665555432 2332 11 566
Q ss_pred CcEEEEecCCCCCCCCCCcchHHHHHhh-cCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcC
Q 002071 759 SCLRLWFDKEEEDGGRRKEEDDQQLLEA-LQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQI 831 (973)
Q Consensus 759 ~~L~L~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 831 (973)
+.|+|+.|....... +... ..+++.|+.|+|++|.++. +|.++..+++|+.|+|++|.+...+
T Consensus 183 ~~L~Ls~N~L~~lp~---------~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 183 EALDVSTNLLESLPA---------VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CEEECCSSCCSSCCC---------CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred CEEECcCCCCCchhh---------HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 666666665432100 0000 0112223666666666665 6666666666777777666654433
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=2.2e-13 Score=151.32 Aligned_cols=242 Identities=13% Similarity=0.030 Sum_probs=143.2
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcc-cccEEEecccccccccccccCccccCC-CCCcEEEecCCCccccc
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELT-SLRAIEVSKLFYTKSTILEIPTNVKRL-VHLRYLNLSHQSIEKLP 642 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~~~lp~~i~~L-~~L~~L~Ls~~~i~~Lp 642 (973)
...++|+.|+++++.+.... ...+...+..++ .|++|+|++|.++......+...+... .+|++|+|++|.++..+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSIS--TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSC--HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred hCCCCceEEEccCCCCChHH--HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 34455999999998763221 112235578888 899999999766543222222223333 89999999999988544
Q ss_pred -hh----hhcc-ccccEEecCCCCCCcccCc-c----ccC-CCCcceeecCCCCCCCcc----cccCCCccccccCCeee
Q 002071 643 -ET----LCEL-YNLQKLDVSDCYGLKELPQ-G----IGK-LVNMKHLLDDKTDSLGHM----PVGIGRLTSLRTLVEFH 706 (973)
Q Consensus 643 -~~----i~~L-~~Lq~L~L~~~~~~~~lp~-~----i~~-L~~L~~L~l~~~~~~~~~----p~~i~~l~~L~~L~~~~ 706 (973)
.. +..+ ++|++|++++|. +...+. . +.. .++|++|++++|...... +..+..++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~--------- 166 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP--------- 166 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC---------
T ss_pred HHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC---------
Confidence 43 4444 899999999998 555443 2 334 368999999998543221 11122222
Q ss_pred eCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCC-CCCCcEEEEecCCCCCCCCCCcchHHHHHh
Q 002071 707 VSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKM-KYLSCLRLWFDKEEEDGGRRKEEDDQQLLE 785 (973)
Q Consensus 707 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~ 785 (973)
++|+.|++.++..... ........+... ++|+.|+|++|..... ....+..
T Consensus 167 ------------------~~L~~L~Ls~n~l~~~---~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-------~~~~l~~ 218 (362)
T 3goz_A 167 ------------------ANVNSLNLRGNNLASK---NCAELAKFLASIPASVTSLDLSANLLGLK-------SYAELAY 218 (362)
T ss_dssp ------------------TTCCEEECTTSCGGGS---CHHHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHH
T ss_pred ------------------ccccEeeecCCCCchh---hHHHHHHHHHhCCCCCCEEECCCCCCChh-------HHHHHHH
Confidence 1344444444332111 111222234444 4778888877754321 2233444
Q ss_pred hcCC-CCCccEEEEeeecCCCCCC-----CccccccCccEEEEecCCCCC-------cC-CCCCCcCcccceeccc
Q 002071 786 ALQP-PLNLKELLIGLYRGNTVFP-----GWMMPLTNLRSLTLEKCEKCK-------QI-PPLGKLSSLEKLMIWG 847 (973)
Q Consensus 786 ~l~~-~~~L~~L~L~~~~~~~~lp-----~~~~~l~~L~~L~L~~~~~~~-------~l-~~l~~l~~L~~L~L~~ 847 (973)
.+.. +++|++|+|++|.+.. .+ ..+..+++|+.|+|++|.... .+ ..+..+++|+.|++++
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHG-PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCC-CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHhcCCCCceEEECcCCCCCc-HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 4444 4578888888887765 32 233467788888888886221 11 2366778888888877
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=1.7e-11 Score=128.47 Aligned_cols=172 Identities=19% Similarity=0.161 Sum_probs=118.3
Q ss_pred CCCcEEEecCCCccccchhhhccccccEEecCCCCCCccc-CccccCCCCcceeecCCCCCCCcccccCCCccccccCCe
Q 002071 626 VHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKEL-PQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVE 704 (973)
Q Consensus 626 ~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 704 (973)
...++++++++.++.+|..+. .+|++|+|++|. +..+ |..+..+++|++|++++|......|..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 357889999999999998765 689999999998 5555 456889999999999999665544455677777777765
Q ss_pred eeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHH
Q 002071 705 FHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLL 784 (973)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l 784 (973)
..+.... ..+. .+..+++|+.|+|++|...... .
T Consensus 91 ~~n~l~~----~~~~-------------------------------~~~~l~~L~~L~L~~N~l~~~~-----------~ 124 (251)
T 3m19_A 91 ANNQLAS----LPLG-------------------------------VFDHLTQLDKLYLGGNQLKSLP-----------S 124 (251)
T ss_dssp TTSCCCC----CCTT-------------------------------TTTTCTTCCEEECCSSCCCCCC-----------T
T ss_pred CCCcccc----cChh-------------------------------HhcccCCCCEEEcCCCcCCCcC-----------h
Confidence 4332221 1111 2334455666666655443210 1
Q ss_pred hhcCCCCCccEEEEeeecCCCCCCC-ccccccCccEEEEecCCCCCcCC-CCCCcCcccceeccc
Q 002071 785 EALQPPLNLKELLIGLYRGNTVFPG-WMMPLTNLRSLTLEKCEKCKQIP-PLGKLSSLEKLMIWG 847 (973)
Q Consensus 785 ~~l~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~ 847 (973)
..+..+++|+.|++++|.+.. +|. .+..+++|+.|+|++|.+....+ .+..+++|+.|+|.+
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 124556788888888888777 544 67788888888888887665443 277788888888876
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.29 E-value=4.6e-12 Score=127.23 Aligned_cols=124 Identities=12% Similarity=0.201 Sum_probs=58.3
Q ss_pred cCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccc-cch
Q 002071 565 CRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEK-LPE 643 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~-Lp~ 643 (973)
..+++|+.|.+.++.+. .++ .+..+++|++|++++|.+ ..+ ..+..+++|++|++++|.++. .|.
T Consensus 41 ~~l~~L~~L~l~~n~i~------~l~--~l~~l~~L~~L~l~~n~~-----~~~-~~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT------DLT--GIEYAHNIKDLTINNIHA-----TNY-NPISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHHTCCEEEEESSCCS------CCT--TGGGCTTCSEEEEESCCC-----SCC-GGGTTCTTCCEEEEECTTCBGGGSC
T ss_pred hhcCCccEEeccCCCcc------ChH--HHhcCCCCCEEEccCCCC-----Ccc-hhhhcCCCCCEEEeECCccCcccCh
Confidence 34455555555554431 111 144555555555555322 122 245555555555555555542 344
Q ss_pred hhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCC
Q 002071 644 TLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 644 ~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
.++++++|++|++++|......|..+..+++|++|++++|..+..+| .+..+++|+.|+
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN 165 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence 45555555555555555222344445555555555555553233333 233444444443
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=2.6e-12 Score=135.34 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=58.1
Q ss_pred hcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCc
Q 002071 596 ELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNM 675 (973)
Q Consensus 596 ~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L 675 (973)
.+..+..+++++ +.+..++ .+..+.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|
T Consensus 17 ~l~~l~~l~l~~-----~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGK-----QSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTC-----SCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSC
T ss_pred HHHHHHHHHhcC-----CCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCC
Confidence 344555666776 3444455 5677888888888888888777 57788888888888886 667766 7788888
Q ss_pred ceeecCCCC
Q 002071 676 KHLLDDKTD 684 (973)
Q Consensus 676 ~~L~l~~~~ 684 (973)
++|++++|.
T Consensus 88 ~~L~L~~N~ 96 (263)
T 1xeu_A 88 EELSVNRNR 96 (263)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 888888773
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=1.5e-11 Score=123.55 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=120.7
Q ss_pred CcceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcccc
Q 002071 544 GEKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVK 623 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~ 623 (973)
...++++.+..+.+..++ .+..+++|++|.+.++.+. . ++ .+..++.|++|++++|.++. ..|..++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~--~-----~~-~l~~l~~L~~L~l~~n~l~~----~~~~~l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT--N-----YN-PISGLSNLERLRIMGKDVTS----DKIPNLS 109 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS--C-----CG-GGTTCTTCCEEEEECTTCBG----GGSCCCT
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC--c-----ch-hhhcCCCCCEEEeECCccCc----ccChhhc
Confidence 456889999998887666 6889999999999998541 1 12 37789999999999965543 3577899
Q ss_pred CCCCCcEEEecCCCccc-cchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccC
Q 002071 624 RLVHLRYLNLSHQSIEK-LPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTL 702 (973)
Q Consensus 624 ~L~~L~~L~Ls~~~i~~-Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 702 (973)
.+++|++|++++|.++. .|..++++++|++|++++|..+..+| .+..+++|++|++++|.. ..++ .+..+++|+.|
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEE
Confidence 99999999999999984 77889999999999999997677887 689999999999999954 4454 67778888888
Q ss_pred CeeeeC
Q 002071 703 VEFHVS 708 (973)
Q Consensus 703 ~~~~~~ 708 (973)
++..+.
T Consensus 187 ~l~~N~ 192 (197)
T 4ezg_A 187 YAFSQT 192 (197)
T ss_dssp EECBC-
T ss_pred EeeCcc
Confidence 765543
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=1.4e-11 Score=131.85 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=69.7
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLV 673 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~ 673 (973)
+..+++|++|++++|.+ ..++. +.++++|++|++++|.++.+|. +.++++|++|++++|. +..++ .+..++
T Consensus 64 ~~~l~~L~~L~L~~n~l-----~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~-i~~~~-~l~~l~ 134 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKL-----TDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG-ISDIN-GLVHLP 134 (291)
T ss_dssp GGGCTTCCEEECCSSCC-----CCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC-CCCCG-GGGGCT
T ss_pred HhcCCCCCEEEccCCcc-----CCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCc-CCCCh-hhcCCC
Confidence 34445555555555322 22332 4555555555555555554443 4555555555555554 43332 344555
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhcc
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELD 753 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~ 753 (973)
+|++|++++|.. ..+ ..++.+++|+.|++..+..... + .+..+++|+.|++.++... .++ .+.
T Consensus 135 ~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~-----~-~l~~l~~L~~L~L~~N~i~-~l~--------~l~ 197 (291)
T 1h6t_A 135 QLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDI-----V-PLAGLTKLQNLYLSKNHIS-DLR--------ALA 197 (291)
T ss_dssp TCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCC-----G-GGTTCTTCCEEECCSSCCC-BCG--------GGT
T ss_pred CCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccc-----h-hhcCCCccCEEECCCCcCC-CCh--------hhc
Confidence 555555555432 222 2344455555554443332220 1 1444455555554444321 111 245
Q ss_pred CCCCCCcEEEEecCCC
Q 002071 754 KMKYLSCLRLWFDKEE 769 (973)
Q Consensus 754 ~~~~L~~L~L~~~~~~ 769 (973)
.+++|+.|++++|...
T Consensus 198 ~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 198 GLKNLDVLELFSQECL 213 (291)
T ss_dssp TCTTCSEEEEEEEEEE
T ss_pred cCCCCCEEECcCCccc
Confidence 5667777777766543
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=3.5e-12 Score=154.17 Aligned_cols=158 Identities=20% Similarity=0.176 Sum_probs=97.0
Q ss_pred CcceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcccc
Q 002071 544 GEKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVK 623 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~ 623 (973)
...++++.+..+.....+.......+|+.+.+.......+.+ ..++..|..++.|++|+|++| .+..+|..+.
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n-----~l~~l~~~~~ 244 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNL-----QIFNISANIF 244 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTS-----CCSCCCGGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCC-----CCCCCChhhc
Confidence 345777777666655444444445555555544433211111 235666889999999999994 4556888899
Q ss_pred CCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCC
Q 002071 624 RLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 624 ~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
.+.+|++|+|++|.|+.+|..|++|.+|++|+|++|. +..+|..++.|++|++|+|++|. +..+|..|+.|++|++|+
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence 9999999999999999999999999999999999998 77999999999999999999995 468899999999999998
Q ss_pred eeeeCCC
Q 002071 704 EFHVSGG 710 (973)
Q Consensus 704 ~~~~~~~ 710 (973)
+..+...
T Consensus 323 L~~N~l~ 329 (727)
T 4b8c_D 323 VEGNPLE 329 (727)
T ss_dssp CTTSCCC
T ss_pred CCCCccC
Confidence 7655443
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=2.2e-11 Score=141.59 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=52.3
Q ss_pred CCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCC
Q 002071 627 HLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 627 ~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
+|++|+|++|.++.+|..+ +++|++|+|++|. +..+| ..+++|++|++++|.. ..+|. ++. +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEE
Confidence 8999999999999999876 4789999999997 77888 4578999999999844 33555 433 444443
No 118
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=1.6e-10 Score=120.57 Aligned_cols=198 Identities=13% Similarity=0.128 Sum_probs=121.1
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++||+..++.+.+++.... ..+.+.|+|++|+||||||+.+++.......+.. ..+....+. ..+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCDNC----REIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCSHHH----HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcccHHH----HHHh
Confidence 469999999999999986432 2358899999999999999999874221111100 000000000 0000
Q ss_pred HHh-----cCCCCCCCcHHHHHHHHHHH----hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHH-H
Q 002071 263 EAL-----DVSSSGLGEFQSLLKTISKS----ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESV-A 332 (973)
Q Consensus 263 ~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v-~ 332 (973)
... ..........+.....+... ..+++.+|||||++..+...++.+...+.....+..+|+||+.... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000 00000111112222211111 2356899999999876656677787777666677889998876532 1
Q ss_pred -HHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhh
Q 002071 333 -FMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLM 396 (973)
Q Consensus 333 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 396 (973)
........+.+.+++.++.++++.+.+........ .+....|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11233468999999999999999988754332222 3456789999999999887765443
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=1.7e-11 Score=124.32 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=40.8
Q ss_pred ccccEEEecccccccccccccCc-cccCCCCCcEEEecCCCccccchh-hhccccccEEecCCCCCCcccCcc-ccCCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQSIEKLPET-LCELYNLQKLDVSDCYGLKELPQG-IGKLVN 674 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~i~~Lp~~-i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~ 674 (973)
+.|++|++++|.+ ..+|. .+..+.+|++|++++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++
T Consensus 28 ~~l~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNSL-----KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSCC-----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCCcc-----CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccC
Confidence 3555555555332 22332 245555555555555555555432 3555555555555554 4444432 345555
Q ss_pred cceeecCCC
Q 002071 675 MKHLLDDKT 683 (973)
Q Consensus 675 L~~L~l~~~ 683 (973)
|++|++++|
T Consensus 102 L~~L~L~~N 110 (208)
T 2o6s_A 102 LKELALNTN 110 (208)
T ss_dssp CCEEECCSS
T ss_pred CCEEEcCCC
Confidence 555555555
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=2.4e-11 Score=142.99 Aligned_cols=168 Identities=17% Similarity=0.251 Sum_probs=111.0
Q ss_pred cceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccC
Q 002071 545 EKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKR 624 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~ 624 (973)
..++.+.+..+.+..++ .+..+++|+.|.++++.+. .+++ +..+++|+.|+|++|.+. .+| .+..
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~------~~~~--l~~l~~L~~L~Ls~N~l~-----~l~-~l~~ 107 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT------DIKP--LTNLKNLGWLFLDENKIK-----DLS-SLKD 107 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCC------CCGG--GGGCTTCCEEECCSSCCC-----CCT-TSTT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCC------CChh--hccCCCCCEEECcCCCCC-----CCh-hhcc
Confidence 34555555555554433 4667788888888877652 1222 677888888888885443 344 5777
Q ss_pred CCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCccccccCCe
Q 002071 625 LVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVE 704 (973)
Q Consensus 625 L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 704 (973)
+++|++|+|++|.+..+| .+..|++|+.|+|++|. +..+ ..+..|++|++|++++|... .+++ +..+++|+.|++
T Consensus 108 l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYL 182 (605)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCC-Cchh-hccCCCCCEEEC
Confidence 888888888888877765 47788888888888876 6665 45777888888888877543 3333 777777777776
Q ss_pred eeeCCCCCCCCCCccCcccccCCCccCceeeecc
Q 002071 705 FHVSGGGGVGGSNACRLESLKNLELLHVCGIRRL 738 (973)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l 738 (973)
..+.... ...+..+++|+.|++.++...
T Consensus 183 s~N~i~~------l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 183 SKNHISD------LRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCB------CGGGTTCTTCSEEECCSEEEE
T ss_pred cCCCCCC------ChHHccCCCCCEEEccCCcCc
Confidence 6554433 123556666776666666543
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.19 E-value=2.2e-11 Score=123.50 Aligned_cols=152 Identities=24% Similarity=0.305 Sum_probs=103.3
Q ss_pred CCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-cccCCCCCcEEEecCCCccccchh-
Q 002071 567 IKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQSIEKLPET- 644 (973)
Q Consensus 567 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~i~~Lp~~- 644 (973)
.++|+.|.+.++.+. .+++..|..+++|++|++++|.+ ..+|. .+..+.+|++|+|++|.++.+|..
T Consensus 27 ~~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK------SLPNGVFDELTSLTQLYLGGNKL-----QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CTTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcEEEcCCCccC------cCChhhhcccccCcEEECCCCcc-----CccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 457888888887652 22334467788888888888544 34544 357888888888888888877654
Q ss_pred hhccccccEEecCCCCCCcccCcc-ccCCCCcceeecCCCCCCCcccc-cCCCccccccCCeeeeCCCCCCCCCCccCcc
Q 002071 645 LCELYNLQKLDVSDCYGLKELPQG-IGKLVNMKHLLDDKTDSLGHMPV-GIGRLTSLRTLVEFHVSGGGGVGGSNACRLE 722 (973)
Q Consensus 645 i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 722 (973)
+.++++|++|++++|. +..+|.. +..+++|++|++++|... .+|. .+..+++|+.|++..+... .
T Consensus 96 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~-----------~ 162 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD-----------C 162 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC-----------C
T ss_pred hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee-----------c
Confidence 6788888888888887 6666654 678888888888888554 4444 3677888887765544221 2
Q ss_pred cccCCCccCceeeeccCCCC
Q 002071 723 SLKNLELLHVCGIRRLGNVT 742 (973)
Q Consensus 723 ~l~~L~~L~~~~~~~l~~~~ 742 (973)
.+++|+.|+...+...+.+|
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBB
T ss_pred CCCCHHHHHHHHHhCCceee
Confidence 34556666655555544444
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=3e-11 Score=124.39 Aligned_cols=127 Identities=24% Similarity=0.356 Sum_probs=90.9
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-cccCCCCCcEEEecCCCccccchh-h
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQSIEKLPET-L 645 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~i~~Lp~~-i 645 (973)
++|+.|.++++.+. .+.+..|..+++|++|+|++|.+ ..+|. .+..+.+|++|+|++|.|+.+|.. +
T Consensus 40 ~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~N~l-----~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQIT------KLEPGVFDSLINLKELYLGSNQL-----GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCEEEcCCCccC------ccCHHHhhCccCCcEEECCCCCC-----CCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence 77888888887652 22334467788888888888443 44553 457788888888888888877654 5
Q ss_pred hccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCccc-ccCCCccccccCCeeee
Q 002071 646 CELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMP-VGIGRLTSLRTLVEFHV 707 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~ 707 (973)
..+++|++|+|++|. +..+|..+..+++|++|++++|.. ..+| ..+..+++|+.|++..+
T Consensus 109 ~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 109 DRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTS
T ss_pred CcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCC
Confidence 788888888888887 778888888888888888888754 3444 34667777777765443
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=2.8e-11 Score=123.72 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=85.3
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEeccccccccccccc-CccccCCCCCcEEEecCCCccccchh-h
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKLPET-L 645 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~Lp~~-i 645 (973)
++++.|.+.++.+ ..+.+..|..+++|++|+|++|.++ .+ |..+..+.+|++|+|++|.|+.+|.. +
T Consensus 32 ~~l~~L~l~~n~i------~~i~~~~~~~l~~L~~L~Ls~N~i~-----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTI------KVIPPGAFSPYKKLRRIDLSNNQIS-----ELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100 (220)
T ss_dssp TTCCEEECCSSCC------CEECTTSSTTCTTCCEEECCSSCCC-----EECTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred cCCCEEECCCCcC------CCcCHhHhhCCCCCCEEECCCCcCC-----CcCHHHhhCCcCCCEEECCCCcCCccCHhHc
Confidence 5677777777664 2223334667778888888875443 33 66777788888888888887777754 5
Q ss_pred hccccccEEecCCCCCCccc-CccccCCCCcceeecCCCCCCCcccccCCCccccccCCeee
Q 002071 646 CELYNLQKLDVSDCYGLKEL-PQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFH 706 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 706 (973)
.++++|++|+|++|. +..+ |..+..+++|++|++++|......+..+..+++|+.|++..
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 678888888888877 4444 55677788888888887754433333466677777665444
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.17 E-value=6.9e-10 Score=113.79 Aligned_cols=184 Identities=11% Similarity=-0.015 Sum_probs=118.1
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 261 (973)
.+++|++..++++.+++... ....+.|+|.+|+||||+|+.+++... ...+ ...+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 46899999999999998643 223489999999999999999987321 1122 223444444433332222111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHH--HHHhCCCC
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESV--AFMMGSTD 339 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v--~~~~~~~~ 339 (973)
....... ....+++.+|||||++......++.+...+.....+.++|+||+.... ........
T Consensus 90 ~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 1111100 011367899999999876655566677777666667889998876531 11122334
Q ss_pred eeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 340 IIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 340 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
.+.+.+++.++..+++.+.+...+.... .+....+++.++|.|..+..+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 8899999999999999987643222111 345677889999999855443
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=9.3e-11 Score=123.42 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=68.8
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLV 673 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~ 673 (973)
+..++.|++|++++| .+..+| .+..+.+|++|+|++|.++.+|. +.++++|++|++++|. +..+|.... +
T Consensus 37 ~~~l~~L~~L~l~~n-----~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~ 106 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-----NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--A 106 (263)
T ss_dssp HHHHTTCSEEECTTS-----CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--S
T ss_pred hhhcCcCcEEECcCC-----Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcccc--C
Confidence 566777888888774 344455 57777788888888887777776 7777888888888776 666665333 7
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCCeeee
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFHV 707 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 707 (973)
+|++|++++|.. ..+| .++.+++|+.|++..+
T Consensus 107 ~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 107 CLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNN 138 (263)
T ss_dssp SCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTS
T ss_pred cccEEEccCCcc-CCCh-hhcCcccccEEECCCC
Confidence 788888877743 3333 4666666666654443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=5.1e-11 Score=116.17 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=94.5
Q ss_pred CCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccc-cchhh
Q 002071 567 IKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEK-LPETL 645 (973)
Q Consensus 567 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~-Lp~~i 645 (973)
.++|+.|.+.++.+... . ++..+..+++|++|++++|.++ .+ ..++.+++|++|+|++|.+.. +|..+
T Consensus 23 ~~~L~~L~l~~n~l~~~----~-i~~~~~~l~~L~~L~l~~n~l~-----~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDG----K-IEGLTAEFVNLEFLSLINVGLI-----SV-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp TTSCSEEECCSCBCBTT----B-CSSCCGGGGGCCEEEEESSCCC-----CC-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred cccCCEEECCCCCCChh----h-HHHHHHhCCCCCEEeCcCCCCC-----Ch-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 46788888887765211 1 2223577888999999885543 34 667888889999999988886 77777
Q ss_pred hccccccEEecCCCCCCcccC--ccccCCCCcceeecCCCCCCCcccc----cCCCccccccCCeeeeCC
Q 002071 646 CELYNLQKLDVSDCYGLKELP--QGIGKLVNMKHLLDDKTDSLGHMPV----GIGRLTSLRTLVEFHVSG 709 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~~ 709 (973)
.++++|++|++++|. +..+| ..+..+++|++|++++|.. ...|. .+..+++|+.|++..+..
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCCh
Confidence 778899999999886 77765 6788888899999988854 34444 567777777777665543
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=8.9e-11 Score=119.91 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=92.1
Q ss_pred EEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccccCCCC
Q 002071 549 HLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVH 627 (973)
Q Consensus 549 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~ 627 (973)
.+.+..+....+|..+ .+.++.|.+.++.+... .....|..++.|++|+|++|.+ ..++ ..+..+.+
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~-----~~~~~~~~l~~L~~L~L~~N~i-----~~i~~~~~~~l~~ 82 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVL-----EATGIFKKLPQLRKINFSNNKI-----TDIEEGAFEGASG 82 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEE-----CCCCCGGGCTTCCEEECCSSCC-----CEECTTTTTTCTT
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCcc-----CchhhhccCCCCCEEECCCCcC-----CEECHHHhCCCCC
Confidence 3444444444444332 23456777777664211 0122366777888888887443 3343 36777888
Q ss_pred CcEEEecCCCccccch-hhhccccccEEecCCCCCCccc-CccccCCCCcceeecCCCCCCCcccccCCCccccccCCee
Q 002071 628 LRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLKEL-PQGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEF 705 (973)
Q Consensus 628 L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 705 (973)
|++|+|++|.++.+|. .+.++++|++|+|++|. +..+ |..+..+++|++|++++|......|..+..+++|+.|++.
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 8888888888776654 47778888888888877 4444 5667778888888888776554446667777777776654
Q ss_pred ee
Q 002071 706 HV 707 (973)
Q Consensus 706 ~~ 707 (973)
.+
T Consensus 162 ~N 163 (220)
T 2v70_A 162 AN 163 (220)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=3.2e-11 Score=115.02 Aligned_cols=125 Identities=23% Similarity=0.251 Sum_probs=85.3
Q ss_pred CCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccc-cchhh
Q 002071 567 IKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEK-LPETL 645 (973)
Q Consensus 567 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~-Lp~~i 645 (973)
.++++.|.+.++.+... . .+..+..+++|++|++++|.++ .+ ..++.+++|++|++++|.++. +|..+
T Consensus 16 ~~~l~~L~l~~n~l~~~----~-~~~~~~~l~~L~~L~l~~n~l~-----~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG----K-LEGLTDEFEELEFLSTINVGLT-----SI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp GGGCSEEECTTCBCBTT----B-CCSCCTTCTTCCEEECTTSCCC-----CC-TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CccCeEEEccCCcCChh----H-HHHHHhhcCCCcEEECcCCCCC-----Cc-hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 46677777777765211 1 1223567788888888885443 33 567778888888888888876 77777
Q ss_pred hccccccEEecCCCCCCcccC--ccccCCCCcceeecCCCCCCCcccc----cCCCccccccCCe
Q 002071 646 CELYNLQKLDVSDCYGLKELP--QGIGKLVNMKHLLDDKTDSLGHMPV----GIGRLTSLRTLVE 704 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 704 (973)
.++++|++|++++|. +..+| ..+..+++|++|++++|.. ...|. .++.+++|+.|++
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence 778888888888887 66654 6777888888888888744 33443 4566666666653
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.08 E-value=3.4e-10 Score=116.41 Aligned_cols=103 Identities=28% Similarity=0.343 Sum_probs=69.3
Q ss_pred ccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccch-hhhccccccEEecCCCCCCcccCcc-ccCCCCc
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLKELPQG-IGKLVNM 675 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L 675 (973)
++|++|+|++|.++. ..|..+..+.+|++|+|++|.|..+|. .+..+++|++|+|++|. +..+|.. +..+++|
T Consensus 40 ~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITK----LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhh
Confidence 677788888754432 125567777788888888887777764 35777788888888776 6666544 4677778
Q ss_pred ceeecCCCCCCCcccccCCCccccccCCeee
Q 002071 676 KHLLDDKTDSLGHMPVGIGRLTSLRTLVEFH 706 (973)
Q Consensus 676 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 706 (973)
++|++++|.. ..+|..+..+++|+.|++..
T Consensus 115 ~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 115 KELFMCCNKL-TELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CEEECCSSCC-CSCCTTGGGCTTCSEEECCS
T ss_pred CeEeccCCcc-cccCcccccCCCCCEEECCC
Confidence 8888877743 46666666666666665443
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=9.8e-11 Score=115.09 Aligned_cols=128 Identities=21% Similarity=0.175 Sum_probs=95.8
Q ss_pred ccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccch
Q 002071 564 TCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPE 643 (973)
Q Consensus 564 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~ 643 (973)
+.++.+|+.|.+.++.+. .+ +.+....++|++|++++|.++ .+ ..++.+++|++|+|++|.|+.+|.
T Consensus 15 ~~~~~~L~~L~l~~n~l~--~i-----~~~~~~~~~L~~L~Ls~N~l~-----~~-~~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP--VI-----ENLGATLDQFDAIDFSDNEIR-----KL-DGFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp EECTTSCEEEECTTSCCC--SC-----CCGGGGTTCCSEEECCSSCCC-----EE-CCCCCCSSCCEEECCSSCCCEECS
T ss_pred cCCcCCceEEEeeCCCCc--hh-----HHhhhcCCCCCEEECCCCCCC-----cc-cccccCCCCCEEECCCCcccccCc
Confidence 456788999999988763 11 222233448999999996554 34 578889999999999999998886
Q ss_pred hh-hccccccEEecCCCCCCcccCc--cccCCCCcceeecCCCCCCCccccc----CCCccccccCCeee
Q 002071 644 TL-CELYNLQKLDVSDCYGLKELPQ--GIGKLVNMKHLLDDKTDSLGHMPVG----IGRLTSLRTLVEFH 706 (973)
Q Consensus 644 ~i-~~L~~Lq~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~ 706 (973)
.+ ..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. ++.+++|+.|++..
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEE
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCc
Confidence 55 899999999999997 788887 788999999999999854 345543 55666666665443
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.08 E-value=3.5e-10 Score=115.53 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=68.6
Q ss_pred ccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccCcc-ccCCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELPQG-IGKLVN 674 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~ 674 (973)
+.|+.|++++|.+ ..+| ..+..+.+|++|+|++|.|..+ |..+.++++|++|+|++|. +..+|.. +..+++
T Consensus 32 ~~l~~L~l~~n~i-----~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNTI-----KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSCC-----CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCcC-----CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCC
Confidence 4677778877433 3444 3567777788888887777755 5677777788888887776 6666654 466777
Q ss_pred cceeecCCCCCCCcccccCCCccccccCCeee
Q 002071 675 MKHLLDDKTDSLGHMPVGIGRLTSLRTLVEFH 706 (973)
Q Consensus 675 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 706 (973)
|++|++++|......|..+..+++|+.|++..
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 88887777755444444555666666555433
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=8.4e-11 Score=114.64 Aligned_cols=134 Identities=20% Similarity=0.211 Sum_probs=110.8
Q ss_pred CcceEEEEEEccCCC--CCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 544 GEKVCHLMLSIHEGA--PFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
+..++++.+..+... .++..+..+++|+.|.+.++.+.. + ..+..+++|++|++++|.++. .+|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~------~--~~~~~l~~L~~L~Ls~N~l~~----~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS------V--SNLPKLPKLKKLELSENRIFG----GLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC------C--SSCCCCSSCCEEEEESCCCCS----CCCHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC------h--hhhccCCCCCEEECcCCcCch----HHHHH
Confidence 577889999888876 577777899999999999987632 1 337789999999999965543 16777
Q ss_pred ccCCCCCcEEEecCCCccccc--hhhhccccccEEecCCCCCCcccCc----cccCCCCcceeecCCCCCCCcccc
Q 002071 622 VKRLVHLRYLNLSHQSIEKLP--ETLCELYNLQKLDVSDCYGLKELPQ----GIGKLVNMKHLLDDKTDSLGHMPV 691 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~Lp--~~i~~L~~Lq~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~~~~~~~~p~ 691 (973)
+..+++|++|+|++|.++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~ 164 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED-QEAPD 164 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS-CBCCS
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh-hhccc
Confidence 778999999999999999887 789999999999999998 777776 788999999999999843 44453
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=2.7e-11 Score=146.43 Aligned_cols=123 Identities=21% Similarity=0.244 Sum_probs=100.8
Q ss_pred CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccc
Q 002071 561 PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEK 640 (973)
Q Consensus 561 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~ 640 (973)
+..+..+++|+.|.++++.+. .++.. +..+++|++|+|++|. +..+|..+++|.+|++|+|++|.|+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~------~l~~~-~~~l~~L~~L~Ls~N~-----l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF------NISAN-IFKYDFLTRLYLNGNS-----LTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp -----CCCCCCEEECTTSCCS------CCCGG-GGGCCSCSCCBCTTSC-----CSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred hhhhccCCCCcEEECCCCCCC------CCChh-hcCCCCCCEEEeeCCc-----CcccChhhhCCCCCCEEeCcCCcCCc
Confidence 455678899999999998762 22333 3489999999999954 44689999999999999999999999
Q ss_pred cchhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCcccccCCCc
Q 002071 641 LPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMPVGIGRL 696 (973)
Q Consensus 641 Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 696 (973)
+|..|++|.+|++|+|++|. +..+|..++.|++|++|+|++|......|..+..+
T Consensus 285 lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred cChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 99999999999999999997 88999999999999999999997766666655443
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.06 E-value=4.8e-10 Score=114.45 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=65.6
Q ss_pred ccccEEEecccccccccccccC--ccccCCCCCcEEEecCCCccccch-hhhccccccEEecCCCCCCcccCc-cccCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEIP--TNVKRLVHLRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLKELPQ-GIGKLV 673 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp--~~i~~L~~L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~ 673 (973)
..+++|+|++|.+ ..++ ..+..+++|++|+|++|.|+.+|. .+.++.+|++|+|++|. +..+|. .+..++
T Consensus 32 ~~~~~L~L~~N~l-----~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNNEF-----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLE 105 (220)
T ss_dssp TTCSEEECCSSCC-----CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCS
T ss_pred CCCCEEEcCCCcC-----CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCc
Confidence 3567777777443 3342 236677777777777777776654 67777777777777776 555544 466777
Q ss_pred CcceeecCCCCCCCcccccCCCccccccCCee
Q 002071 674 NMKHLLDDKTDSLGHMPVGIGRLTSLRTLVEF 705 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 705 (973)
+|++|++++|......|..+..+++|+.|++.
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 77777777775544445556666666665543
No 135
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=2.4e-09 Score=116.65 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=117.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 261 (973)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+++..+....... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 56999999999999998543 223389999999999999999987421 1111 1234444443222221 1112
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH-H-HHHhCCC
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES-V-AFMMGST 338 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v-~~~~~~~ 338 (973)
++.+.... ..+ .+++.++|+||++......++.+...+.....++.+|+||+... + .......
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 21111000 011 45689999999987665566667777766666788888887643 1 1122334
Q ss_pred CeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHHh
Q 002071 339 DIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIGS 394 (973)
Q Consensus 339 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 394 (973)
..+.+.+++.++..+++...+...+.... .+....|++.|+|.|. |+..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 58999999999999999987643221111 3456789999999995 4454443
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=1.4e-10 Score=110.58 Aligned_cols=126 Identities=23% Similarity=0.230 Sum_probs=104.3
Q ss_pred CcceEEEEEEccCCC--CCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcc
Q 002071 544 GEKVCHLMLSIHEGA--PFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
+..++++.+..+... .++..+..+++|+.|.+.++.+.. + ..+..+++|++|++++|.++. .+|..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------~--~~~~~l~~L~~L~Ls~n~i~~----~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS------I--ANLPKLNKLKKLELSDNRVSG----GLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC------C--TTCCCCTTCCEEECCSSCCCS----CTHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC------c--hhhhcCCCCCEEECCCCcccc----hHHHH
Confidence 567888888888776 467777899999999999987632 1 337789999999999965543 16777
Q ss_pred ccCCCCCcEEEecCCCccccc--hhhhccccccEEecCCCCCCcccCc----cccCCCCcceeecCC
Q 002071 622 VKRLVHLRYLNLSHQSIEKLP--ETLCELYNLQKLDVSDCYGLKELPQ----GIGKLVNMKHLLDDK 682 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~Lp--~~i~~L~~Lq~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~ 682 (973)
++.+++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 788999999999999999875 789999999999999997 777775 688999999998863
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.98 E-value=3.9e-10 Score=124.89 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=51.9
Q ss_pred cccEEEecccccccccccccCc-ccc-CCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCc-cccCCCC
Q 002071 599 SLRAIEVSKLFYTKSTILEIPT-NVK-RLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQ-GIGKLVN 674 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~-~i~-~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~ 674 (973)
.+++|+|++|.+ ..++. .+. .+.+|++|+|++|.|+.+| ..+.++++|++|+|++|. +..+|. .+..+++
T Consensus 40 ~l~~L~Ls~N~l-----~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 40 YTALLDLSHNNL-----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQA 113 (361)
T ss_dssp TCSEEECCSSCC-----CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred CCCEEECCCCCC-----CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcC
Confidence 456666666333 23332 233 5666666666666666554 345666666666666665 444443 3555666
Q ss_pred cceeecCCCCCCCcccccCCCccccccCC
Q 002071 675 MKHLLDDKTDSLGHMPVGIGRLTSLRTLV 703 (973)
Q Consensus 675 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 703 (973)
|++|++++|......|..+..+++|+.|+
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 66666666543322233344444444443
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.97 E-value=3e-10 Score=125.80 Aligned_cols=126 Identities=19% Similarity=0.221 Sum_probs=70.8
Q ss_pred CceEEEeCCcccCCCCCchhhHHHHHh-hcccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccccch-hh
Q 002071 569 RMRSLLIGGVVFDHSSLDGNILEELFE-ELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKLPE-TL 645 (973)
Q Consensus 569 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~Lp~-~i 645 (973)
.++.|+++++.+. .+.+..|. .+++|++|+|++|.+ ..++ ..+..+.+|++|+|++|.++.+|. .+
T Consensus 40 ~l~~L~Ls~N~l~------~l~~~~~~~~l~~L~~L~L~~N~i-----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 108 (361)
T 2xot_A 40 YTALLDLSHNNLS------RLRAEWTPTRLTNLHSLLLSHNHL-----NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108 (361)
T ss_dssp TCSEEECCSSCCC------EECTTSSSSCCTTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCEEECCCCCCC------ccChhhhhhcccccCEEECCCCcC-----CccChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence 4666666666541 12222244 566677777766433 3333 346666677777777766665543 45
Q ss_pred hccccccEEecCCCCCCccc-CccccCCCCcceeecCCCCCCCcccccC----CCccccccCCeeee
Q 002071 646 CELYNLQKLDVSDCYGLKEL-PQGIGKLVNMKHLLDDKTDSLGHMPVGI----GRLTSLRTLVEFHV 707 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~L~~~~~ 707 (973)
.++.+|++|+|++|. +..+ |..+..+++|++|++++|.. ..+|..+ ..+++|+.|++..+
T Consensus 109 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 109 SDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSS
T ss_pred CCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCC
Confidence 666677777776666 4333 45566666777777766633 3444432 45666666655443
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.94 E-value=8.8e-10 Score=128.84 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=45.8
Q ss_pred HhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCccc--CccccC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKEL--PQGIGK 671 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~l--p~~i~~ 671 (973)
+..+++|++|+|++| .+..+|..++.+++|++|+|++|.|+.+| .++++++|++|+|++|. +..+ |..++.
T Consensus 459 ~~~l~~L~~L~Ls~N-----~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~ 531 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-----RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVS 531 (567)
T ss_dssp GGGGTTCCEEECCSS-----CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGG
T ss_pred ccccccCcEeecCcc-----cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhc
Confidence 445555555555553 22345555555555555555555555555 45555555555555554 4444 555555
Q ss_pred CCCcceeecCCC
Q 002071 672 LVNMKHLLDDKT 683 (973)
Q Consensus 672 L~~L~~L~l~~~ 683 (973)
|++|++|++++|
T Consensus 532 l~~L~~L~L~~N 543 (567)
T 1dce_A 532 CPRLVLLNLQGN 543 (567)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEEecCC
Confidence 555555555555
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=7.1e-10 Score=129.62 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=72.1
Q ss_pred cccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCCCCccee
Q 002071 599 SLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHL 678 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L 678 (973)
.|++|+|++|. +..+|. ++.+.+|++|+|++|.|+.+|..++++++|++|+|++|. +..+| .++.|++|++|
T Consensus 442 ~L~~L~Ls~n~-----l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKD-----LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSC-----CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEE
T ss_pred CceEEEecCCC-----CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEE
Confidence 47778887743 334665 777778888888888777777778888888888888776 66677 67778888888
Q ss_pred ecCCCCCCCcc-cccCCCccccccCCeeee
Q 002071 679 LDDKTDSLGHM-PVGIGRLTSLRTLVEFHV 707 (973)
Q Consensus 679 ~l~~~~~~~~~-p~~i~~l~~L~~L~~~~~ 707 (973)
++++|...... |..++.+++|+.|++..+
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred ECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 88777544333 667777777777765443
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.92 E-value=8e-10 Score=110.15 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=38.4
Q ss_pred ccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccC-ccccCCCCcceeecCCCCCCCcccccCCCcccc
Q 002071 622 VKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELP-QGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSL 699 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 699 (973)
++.+++|++|+|++|.|+.+ |..+.++.+|++|+|++|. +..+| ..+..+++|++|++++|......|..++.+++|
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 44555555555555555443 3445555555555555554 33332 224445555555555554333334444444444
Q ss_pred ccCC
Q 002071 700 RTLV 703 (973)
Q Consensus 700 ~~L~ 703 (973)
+.|+
T Consensus 129 ~~L~ 132 (192)
T 1w8a_A 129 TSLN 132 (192)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 4444
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.91 E-value=3e-09 Score=105.91 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=55.7
Q ss_pred ccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccC-ccccCCCCc
Q 002071 598 TSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELP-QGIGKLVNM 675 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L 675 (973)
+.|++|++++| .+..+|..+..+.+|++|+|++|.|+.++ ..|.++.+|++|+|++|. +..+| ..+..+++|
T Consensus 31 ~~l~~L~L~~n-----~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN-----QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS-----CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTC
T ss_pred CCCCEEECCCC-----cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCC
Confidence 35666666663 33345556666666666666666666554 346666666666666665 44443 345566666
Q ss_pred ceeecCCCCCCCcccc-cCCCccccccCCe
Q 002071 676 KHLLDDKTDSLGHMPV-GIGRLTSLRTLVE 704 (973)
Q Consensus 676 ~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~ 704 (973)
++|++++|.. ..+|. .+..+++|+.|++
T Consensus 105 ~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 105 RLLSLHGNDI-SVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp CEEECCSSCC-CBCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCCC-CeeChhhhhcCccccEEEe
Confidence 6666666633 23333 2444555555443
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=1.8e-09 Score=107.63 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=80.3
Q ss_pred cEEEecccccccccccccCccccCCCCCcEEEecCCCccccchh--hhccccccEEecCCCCCCccc-CccccCCCCcce
Q 002071 601 RAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPET--LCELYNLQKLDVSDCYGLKEL-PQGIGKLVNMKH 677 (973)
Q Consensus 601 r~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~--i~~L~~Lq~L~L~~~~~~~~l-p~~i~~L~~L~~ 677 (973)
++|++++ +.+..+|..+.. +|++|++++|.|..+|.. +.++++|++|+|++|. +..+ |..+..+++|++
T Consensus 11 ~~l~~s~-----~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTG-----RGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTT-----SCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCE
T ss_pred CEEEcCC-----CCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCE
Confidence 7889998 455668877654 899999999999988764 8999999999999998 5555 778999999999
Q ss_pred eecCCCCCCCcccccCCCccccccCCeeeeC
Q 002071 678 LLDDKTDSLGHMPVGIGRLTSLRTLVEFHVS 708 (973)
Q Consensus 678 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 708 (973)
|++++|......|..++.+++|++|++..+.
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 9999996654444557778888877755443
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.91 E-value=7.4e-10 Score=108.74 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=103.6
Q ss_pred CcceEEEEEEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccc-
Q 002071 544 GEKVCHLMLSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNV- 622 (973)
Q Consensus 544 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i- 622 (973)
+..++.+.+..+....++......++|+.|+++++.+. .+ ..+..+++|++|++++|. +..+|..+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~------~~--~~l~~l~~L~~L~Ls~N~-----l~~~~~~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR------KL--DGFPLLRRLKTLLVNNNR-----ICRIGEGLD 84 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC------EE--CCCCCCSSCCEEECCSSC-----CCEECSCHH
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCC------cc--cccccCCCCCEEECCCCc-----ccccCcchh
Confidence 56788899988877765443333449999999998762 22 237789999999999954 44577555
Q ss_pred cCCCCCcEEEecCCCccccch--hhhccccccEEecCCCCCCcccCcc----ccCCCCcceeecCCCC
Q 002071 623 KRLVHLRYLNLSHQSIEKLPE--TLCELYNLQKLDVSDCYGLKELPQG----IGKLVNMKHLLDDKTD 684 (973)
Q Consensus 623 ~~L~~L~~L~Ls~~~i~~Lp~--~i~~L~~Lq~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~~~ 684 (973)
+.+++|++|+|++|.|..+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 899999999999999999987 89999999999999998 7788875 8899999999998874
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=4e-09 Score=114.92 Aligned_cols=267 Identities=16% Similarity=0.143 Sum_probs=143.7
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|++..++++...+..... .......+.|+|++|+||||+|+.+++. ... ..+++..+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH------
Confidence 5699999999988887753210 0123457889999999999999999873 221 234454433222211
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC------------------CCcEEEE
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL------------------PESKILV 324 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~------------------~gs~iiv 324 (973)
+...+...+ .+..+|+||++..........+...+.... ++..+|.
T Consensus 80 ---------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 80 ---------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ---------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ---------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 111111111 346688999997665444444554443221 2356776
Q ss_pred EcCChH-HHHHh-CC-CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHhhhcC---
Q 002071 325 TTRKES-VAFMM-GS-TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGSLMRS--- 398 (973)
Q Consensus 325 Ttr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~--- 398 (973)
||.... +...+ .- ...+.+.+++.+|..+++.+.+........ .+....+++.++|.|-.+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 666432 11111 11 247899999999999999887654322111 345678899999999877655443321
Q ss_pred ---C--CCHHHHHHHHhhhhhhhhhhcccchhhhhhhccCCchHHHHHHhhhc-CcCCC----------ceeCHHHHHH-
Q 002071 399 ---K--KTEEEWQRILSSELWKIEEIEKGVLTPLWLSYNDLPSRVKRCFSYCA-VFPKD----------FNIEKERLIT- 461 (973)
Q Consensus 399 ---~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~-~fp~~----------~~i~~~~li~- 461 (973)
. -+.+....+... +...+..++...+..+..+. .|..+ ..+++..+.+
T Consensus 220 ~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 134444433322 11223334444444333322 11111 1123333222
Q ss_pred ---HHHHcCCCCCC-CCCcHHHHHHHHHH-HHHhcccccc
Q 002071 462 ---LWMAQGYLGVE-QDEETNIIGEEYFN-ILATRSFFQE 496 (973)
Q Consensus 462 ---~wia~g~i~~~-~~~~~~~~~~~~~~-~L~~~~ll~~ 496 (973)
+-+..|++... .+....+.|..||+ ++.+|+|+|+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34556777543 34556677888887 8888888874
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=9.9e-12 Score=124.91 Aligned_cols=83 Identities=24% Similarity=0.296 Sum_probs=47.4
Q ss_pred HHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccccccEEecCCCCCCcccCccccCC
Q 002071 593 LFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELYNLQKLDVSDCYGLKELPQGIGKL 672 (973)
Q Consensus 593 ~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L 672 (973)
.+..+++|++|++++|.+ ..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l-----~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-----EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-----SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHH
T ss_pred HHhcCCCCCEEECCCCCC-----cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccC
Confidence 355566666666666333 2344 5555666666666666666666555555666666666654 44454 35555
Q ss_pred CCcceeecCCC
Q 002071 673 VNMKHLLDDKT 683 (973)
Q Consensus 673 ~~L~~L~l~~~ 683 (973)
++|++|++++|
T Consensus 115 ~~L~~L~l~~N 125 (198)
T 1ds9_A 115 VNLRVLYMSNN 125 (198)
T ss_dssp HHSSEEEESEE
T ss_pred CCCCEEECCCC
Confidence 66666666555
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=5.4e-11 Score=119.48 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=102.8
Q ss_pred CCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcc
Q 002071 560 FPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE 639 (973)
Q Consensus 560 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~ 639 (973)
++..+..+++|+.|.++++.+.. ++ .+..+++|++|++++|.+ ..+|..+..+++|++|++++|.++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~------l~--~~~~l~~L~~L~l~~n~l-----~~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK------IS--SLSGMENLRILSLGRNLI-----KKIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC------CC--CHHHHTTCCEEEEEEEEE-----CSCSSHHHHHHHCSEEEEEEEECC
T ss_pred hhHHHhcCCCCCEEECCCCCCcc------cc--ccccCCCCCEEECCCCCc-----ccccchhhcCCcCCEEECcCCcCC
Confidence 44577889999999999987632 22 478899999999999544 468888888899999999999999
Q ss_pred ccchhhhccccccEEecCCCCCCcccCc--cccCCCCcceeecCCCCCCCccccc----------CCCccccccCC
Q 002071 640 KLPETLCELYNLQKLDVSDCYGLKELPQ--GIGKLVNMKHLLDDKTDSLGHMPVG----------IGRLTSLRTLV 703 (973)
Q Consensus 640 ~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----------i~~l~~L~~L~ 703 (973)
.+| .+.++++|++|++++|. +..+|. .+..+++|++|++++|......|.. +..+++|+.|+
T Consensus 107 ~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 107 SLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 988 69999999999999998 776664 6889999999999999654433331 45555666554
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.84 E-value=5.2e-09 Score=102.79 Aligned_cols=105 Identities=20% Similarity=0.373 Sum_probs=59.6
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCc-cccCCCCCcEEEecCCCccccchh-h
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQSIEKLPET-L 645 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~i~~Lp~~-i 645 (973)
++|+.|.+.++.+. .+++..|..+++|++|++++|.+ ..+|. .++.+.+|++|++++|.++.+|.. +
T Consensus 28 ~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 28 SSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSQNQI-----QSLPDGVFDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp TTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEEEeCCCccc------EeCHHHhcCcccccEEECCCCcc-----eEeChhHccCCCccCEEECCCCCccccCHHHh
Confidence 46666666665541 12223345566666666666433 23433 345666666666666666655543 4
Q ss_pred hccccccEEecCCCCCCcccCcc-ccCCCCcceeecCCCC
Q 002071 646 CELYNLQKLDVSDCYGLKELPQG-IGKLVNMKHLLDDKTD 684 (973)
Q Consensus 646 ~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 684 (973)
.++++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 97 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 97 DKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 566666666666665 5555544 3456666666666664
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.83 E-value=7.5e-09 Score=103.05 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=80.1
Q ss_pred EEccCCCCCCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccccCCCCCcE
Q 002071 552 LSIHEGAPFPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRY 630 (973)
Q Consensus 552 l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~ 630 (973)
...+....+|..+ .++|+.|.+.++.+. .++ ..|..+++|++|+|++|.++ .++ ..+..+.+|++
T Consensus 17 ~~~~~l~~ip~~~--~~~l~~L~L~~n~i~------~ip-~~~~~l~~L~~L~Ls~N~i~-----~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 17 CSNKGLKVLPKGI--PRDVTELYLDGNQFT------LVP-KELSNYKHLTLIDLSNNRIS-----TLSNQSFSNMTQLLT 82 (193)
T ss_dssp CTTSCCSSCCSCC--CTTCCEEECCSSCCC------SCC-GGGGGCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCE
T ss_pred cCCCCCCcCCCCC--CCCCCEEECCCCcCc------hhH-HHhhcccCCCEEECCCCcCC-----EeCHhHccCCCCCCE
Confidence 3333344344332 357888888877652 122 34677888888888885443 343 45778888888
Q ss_pred EEecCCCccccch-hhhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCC
Q 002071 631 LNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDS 685 (973)
Q Consensus 631 L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~ 685 (973)
|+|++|.|+.+|. .+.++++|++|+|++|. +..+|. .+..+++|++|++++|+.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 8888888876653 57788888888888886 666665 366788888888887743
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=3e-08 Score=108.16 Aligned_cols=120 Identities=12% Similarity=0.146 Sum_probs=70.9
Q ss_pred CCCCceEEEeCCcccCCCCCchhhHHHHHhh-cccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccc-h
Q 002071 566 RIKRMRSLLIGGVVFDHSSLDGNILEELFEE-LTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLP-E 643 (973)
Q Consensus 566 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp-~ 643 (973)
.+.+++.|.+.+.-. ..-+.. +.. +++|++|||++|.+... ..+ -+.++.++++.+..+. +| .
T Consensus 23 ~~~~l~~L~l~g~i~------~~~~~~-l~~~l~~L~~LdLs~n~i~~~---~~~--~~~~~~~~~~~~~~~~---I~~~ 87 (329)
T 3sb4_A 23 EANSITHLTLTGKLN------AEDFRH-LRDEFPSLKVLDISNAEIKMY---SGK--AGTYPNGKFYIYMANF---VPAY 87 (329)
T ss_dssp HHHHCSEEEEEEEEC------HHHHHH-HHHSCTTCCEEEEEEEEECCE---EES--SSSSGGGCCEEECTTE---ECTT
T ss_pred hhCceeEEEEecccc------HHHHHH-HHHhhccCeEEecCcceeEEe---cCc--cccccccccccccccc---cCHH
Confidence 356678888776431 121222 444 78899999999765411 111 1222335666665553 33 3
Q ss_pred hhhc--------cccccEEecCCCCCCcccCc-cccCCCCcceeecCCCCCCCcccccCCCccccccC
Q 002071 644 TLCE--------LYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLRTL 702 (973)
Q Consensus 644 ~i~~--------L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 702 (973)
.|.+ +.+|+.|+|.+ . +..++. .+..+++|+.|++.++......+..+..+.++..+
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE
T ss_pred HhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEe
Confidence 4566 88999999987 4 666664 57788899999988875443333445555444444
No 151
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=4.8e-08 Score=106.49 Aligned_cols=186 Identities=14% Similarity=0.032 Sum_probs=116.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 261 (973)
.+++|++..++.+..++... ....+.++|++|+||||+|+.+++... ...+ ...+.+..+.......+ +..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVI-REK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTT-HHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHHH-HHH
Confidence 46999999999999888543 233489999999999999999987411 1111 12344444332111111 111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHH--HHHhCCCC
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESV--AFMMGSTD 339 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v--~~~~~~~~ 339 (973)
+..+... .....+++.++|+|+++......++.+...+.....++++|+||..... ........
T Consensus 97 ~~~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 1100000 0011267889999999877656667777777666677889988876431 11112234
Q ss_pred eeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHHh
Q 002071 340 IIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIGS 394 (973)
Q Consensus 340 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 394 (973)
.+.+.+++.++..+++...+...+.... .+....|++.++|.|-.+..+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHH
Confidence 7899999999999999887654332222 34567788999999986554433
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=2.2e-08 Score=97.43 Aligned_cols=63 Identities=25% Similarity=0.421 Sum_probs=29.0
Q ss_pred ccccCCCCCcEEEecCCCccccchh-hhccccccEEecCCCCCCcccCc-cccCCCCcceeecCCC
Q 002071 620 TNVKRLVHLRYLNLSHQSIEKLPET-LCELYNLQKLDVSDCYGLKELPQ-GIGKLVNMKHLLDDKT 683 (973)
Q Consensus 620 ~~i~~L~~L~~L~Ls~~~i~~Lp~~-i~~L~~Lq~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~ 683 (973)
..+..+.+|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|. .+..+++|++|++++|
T Consensus 48 ~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 48 GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 3344444555555555544444432 3444455555554444 334433 2444444555554444
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=2.6e-08 Score=97.15 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=55.8
Q ss_pred ccccEEEeccccccccccccc-CccccCCCCCcEEEecCCCccccchh-hhccccccEEecCCCCCCcccCcc-ccCCCC
Q 002071 598 TSLRAIEVSKLFYTKSTILEI-PTNVKRLVHLRYLNLSHQSIEKLPET-LCELYNLQKLDVSDCYGLKELPQG-IGKLVN 674 (973)
Q Consensus 598 ~~Lr~L~L~~~~~~~~~~~~l-p~~i~~L~~L~~L~Ls~~~i~~Lp~~-i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~ 674 (973)
+.|++|+|++|.++ .+ |..++++.+|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|.. +..+++
T Consensus 33 ~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNNQIT-----KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCcEEEeCCCCcc-----ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccC
Confidence 56777777774433 34 45667777777777777777777654 4677777777777776 6666654 667777
Q ss_pred cceeecCCCC
Q 002071 675 MKHLLDDKTD 684 (973)
Q Consensus 675 L~~L~l~~~~ 684 (973)
|++|++++|.
T Consensus 107 L~~L~L~~N~ 116 (174)
T 2r9u_A 107 LTHIYLYNNP 116 (174)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 7777777773
No 154
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.70 E-value=2.6e-07 Score=97.92 Aligned_cols=172 Identities=8% Similarity=-0.043 Sum_probs=108.3
Q ss_pred ceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhc---cC--ceEEEEEeCccccHHHHH
Q 002071 184 EICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNR---KF--DKILWVCVSEAFEEFRIA 258 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F--~~~~wv~~s~~~~~~~~~ 258 (973)
.+.||++++++|...|...-. .+....+.|+|++|.|||++|+.|++...... .. -..++|++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 489999999999988865432 34567889999999999999999998532111 11 135677777778888999
Q ss_pred HHHHHHhcCCCCCC-CcHHHHHHHHHHH--hcCCcEEEEEecCCCCCccChhhHHhhhcCC-CCCc--EEEEEcCChH--
Q 002071 259 RAIVEALDVSSSGL-GEFQSLLKTISKS--ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNG-LPES--KILVTTRKES-- 330 (973)
Q Consensus 259 ~~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~-~~gs--~iivTtr~~~-- 330 (973)
..|++++.+..... ...+.+...+... -+++++++|||+++.-. .-+.+...+... ...+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 99999996543221 2233333333321 24678999999997653 334444444311 1222 3334443321
Q ss_pred ---H----HHHhCCCCeeeCCCCCHHHHHHHHHHHhc
Q 002071 331 ---V----AFMMGSTDIIPVQELAEEECWLLFNRIAF 360 (973)
Q Consensus 331 ---v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 360 (973)
+ ...++ ...+.+.+.+.+|-.+++.+++.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11221 24789999999999999988764
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.70 E-value=1.1e-08 Score=99.96 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=80.6
Q ss_pred ccEEEecccccccccccccCccccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccCcc-ccCCCCcce
Q 002071 600 LRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELPQG-IGKLVNMKH 677 (973)
Q Consensus 600 Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L~~ 677 (973)
-+.+++++ +.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +..+++|++
T Consensus 14 ~~~l~~~~-----n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQN-----IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCS-----SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CcEEEeCC-----CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhE
Confidence 36788888 44556787664 8899999999999877 5678899999999999997 7788775 478999999
Q ss_pred eecCCCCCCCccccc-CCCccccccCCeeeeCCC
Q 002071 678 LLDDKTDSLGHMPVG-IGRLTSLRTLVEFHVSGG 710 (973)
Q Consensus 678 L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~ 710 (973)
|++++|.. ..+|.. ++.+++|+.|++..+...
T Consensus 86 L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCcc-ceeCHHHhccccCCCEEEeCCCCcc
Confidence 99998855 456654 888999998887665443
No 156
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.64 E-value=7.3e-08 Score=94.46 Aligned_cols=104 Identities=29% Similarity=0.406 Sum_probs=79.3
Q ss_pred cccccEEEecccccccccccccCc-cccCCCCCcEEEecCCCccccchh-hhccccccEEecCCCCCCcccCcc-ccCCC
Q 002071 597 LTSLRAIEVSKLFYTKSTILEIPT-NVKRLVHLRYLNLSHQSIEKLPET-LCELYNLQKLDVSDCYGLKELPQG-IGKLV 673 (973)
Q Consensus 597 l~~Lr~L~L~~~~~~~~~~~~lp~-~i~~L~~L~~L~Ls~~~i~~Lp~~-i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~ 673 (973)
.+.|++|++++|.+ ..+|. .++.+.+|++|++++|.++.+|.. +.++++|++|++++|. +..+|.. +..++
T Consensus 27 ~~~l~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 27 PSSATRLELESNKL-----QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLT 100 (177)
T ss_dssp CTTCSEEECCSSCC-----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCCcEEEeCCCcc-----cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCc
Confidence 36889999998544 34554 468899999999999999888754 6889999999999987 6666654 67899
Q ss_pred CcceeecCCCCCCCccccc-CCCccccccCCeeee
Q 002071 674 NMKHLLDDKTDSLGHMPVG-IGRLTSLRTLVEFHV 707 (973)
Q Consensus 674 ~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 707 (973)
+|++|++++|.. ..+|.. +..+++|+.|++..+
T Consensus 101 ~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 101 QLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCC
Confidence 999999998855 455554 467778887765544
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.61 E-value=3.8e-07 Score=101.34 Aligned_cols=195 Identities=15% Similarity=0.160 Sum_probs=116.0
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|++..++.+.+.+.... ..+.+.|+|++|+||||+|+.+++.......+.. ..+.... ....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~~----~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCD----NCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSSH----HHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcccH----HHHHHh
Confidence 459999999999999885432 2357889999999999999999774211111100 0000000 011111
Q ss_pred HHh-------cCC-CCCCCcHHHHHHHHHHH-hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH-H-
Q 002071 263 EAL-------DVS-SSGLGEFQSLLKTISKS-ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES-V- 331 (973)
Q Consensus 263 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v- 331 (973)
... ... ........++.+.+... ..+++.++|+||++..+...++.+...+.....+..+|++|.... +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 01112233333222211 135678999999987665566777777766556677777776443 1
Q ss_pred HHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHH
Q 002071 332 AFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIG 393 (973)
Q Consensus 332 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 393 (973)
.........+.+.+++.++..+++.+.+...+.... .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 112233468899999999999999876543221111 3446779999999998776544
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.60 E-value=3.2e-07 Score=99.45 Aligned_cols=180 Identities=12% Similarity=0.044 Sum_probs=112.4
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 261 (973)
.+++|++..++.+.+++... ....+.++|++|+||||+|+.+++... ...+ ...+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 46999999999998887542 233389999999999999999987311 1111 1123334333111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHH--h-cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH-H-HHHhC
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKS--I-TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES-V-AFMMG 336 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v-~~~~~ 336 (973)
.....+........ + .+++.++|+|+++.......+.+...+.....+..+|+||.... + .....
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 01111111111111 1 25688999999987655555666666665556778888876543 1 11123
Q ss_pred CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 337 STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 337 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
....+.+.+++.++..+++...+...+.... .+....+++.++|.+-.+..
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 3458999999999999999887654332222 34567788999999975543
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.57 E-value=5.4e-08 Score=94.59 Aligned_cols=103 Identities=24% Similarity=0.365 Sum_probs=83.3
Q ss_pred cccEEEecccccccccccccCccccCCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccCcc-ccCCCCcc
Q 002071 599 SLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELPQG-IGKLVNMK 676 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L~ 676 (973)
..++|++++ +.+..+|..+. .+|++|+|++|.|+.+ |..+.++.+|++|+|++|. +..+|.. +..+++|+
T Consensus 10 ~~~~l~~s~-----n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSG-----KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTT-----SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCC-----CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCC
Confidence 457899998 45556887663 8899999999999987 5678999999999999997 7777765 57999999
Q ss_pred eeecCCCCCCCcccc-cCCCccccccCCeeeeCCC
Q 002071 677 HLLDDKTDSLGHMPV-GIGRLTSLRTLVEFHVSGG 710 (973)
Q Consensus 677 ~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~ 710 (973)
+|++++|.. ..+|. .+..+++|+.|++..+...
T Consensus 82 ~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 82 QLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCcc-CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999999965 45555 4889999999987665443
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.49 E-value=6.6e-07 Score=88.82 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=84.3
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh---c--cCceEEEEEeCccccHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN---R--KFDKILWVCVSEAFEEFRI 257 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~--~F~~~~wv~~s~~~~~~~~ 257 (973)
..++||+++++++.+.+... ..+.+.|+|.+|+||||+|+.+++..... . .....+++.++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 90 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV----- 90 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH-----
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh-----
Confidence 46899999999999998542 34567899999999999999998742110 0 11233444332110
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHh--cCCcEEEEEecCCCCC--------ccChhhHHhhhcCCCCCcEEEEEcC
Q 002071 258 ARAIVEALDVSSSGLGEFQSLLKTISKSI--TGKRFFLVLDDVWDGD--------YMKWEPFYHCLKNGLPESKILVTTR 327 (973)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~--------~~~w~~l~~~l~~~~~gs~iivTtr 327 (973)
.. .............+.+.+ .+++.+|||||++... ......+...+.. .+..+|+||.
T Consensus 91 --------~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 91 --------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp --------TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred --------cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 00 000011111111222212 3668899999997642 1223334433332 2456777776
Q ss_pred ChHHHHH-------hCCCCeeeCCCCCHHHHHHHH
Q 002071 328 KESVAFM-------MGSTDIIPVQELAEEECWLLF 355 (973)
Q Consensus 328 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf 355 (973)
....... ......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 5543221 122236888899888876553
No 161
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.45 E-value=5.1e-07 Score=93.37 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=100.4
Q ss_pred Cceecch---hHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRV---SEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
.+++|.. ...+.+..+.... ..+.+.|+|++|+||||||+.+++. .......+.|+.+++..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 3566632 4455555554321 3467899999999999999999874 3333345677776542211
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccC--hhhHHhhhcCC-CCC-cEEEEEcCCh------
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMK--WEPFYHCLKNG-LPE-SKILVTTRKE------ 329 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~--w~~l~~~l~~~-~~g-s~iivTtr~~------ 329 (973)
+ . +.+ +.+ .+..+|||||++...... .+.+...+... ..+ .++|+||+..
T Consensus 95 -----~-------~------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----S-------T------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----C-------G------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----H-------H------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 0 000 011 346789999997654322 23344443221 122 2577777632
Q ss_pred ---HHHHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 330 ---SVAFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 330 ---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
.+...+.....+.+.+++.++..+++...+...+.... .++...+++.++|.+-.+..+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP----EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC----HHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHccCCHHHHHHH
Confidence 22222222368999999999999999887643222111 345677888999988655443
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.42 E-value=4.6e-06 Score=91.09 Aligned_cols=176 Identities=18% Similarity=0.175 Sum_probs=106.3
Q ss_pred CCceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 182 EEEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
-.+++|++..++++..++..... .......|.|+|++|+|||++|+.+++. .... .+.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK-------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc--------
Confidence 35699999999999888864311 1223456899999999999999999763 2222 23333322111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC------------------CCcEEE
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL------------------PESKIL 323 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~------------------~gs~ii 323 (973)
.......+.. ..+..+|+||++..........+...+.... ++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111111 2456789999998765444455555554321 124566
Q ss_pred EEcCChHH-HH-HhC-CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 324 VTTRKESV-AF-MMG-STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 324 vTtr~~~v-~~-~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
.||..... .. ... ....+.+.+++.++..+++.+.+........ .+....|++.+.|.|-.+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE----EKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC----HHHHHHHHHTTTTCHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHCcCHHHHH
Confidence 66664321 11 111 2357999999999999999887653322111 3456778889999995444
No 163
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=3.2e-06 Score=93.06 Aligned_cols=193 Identities=11% Similarity=-0.000 Sum_probs=113.9
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC-ceEEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF-DKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 261 (973)
.+++|++..++.+..++.... ...+.|+|++|+||||+|+.+.+.......+ ...+.+..+.......+ ++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 468999999999999985432 2238999999999999999998742111112 12334444433232222 222
Q ss_pred HHHhcCC-CCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH-HHHH-hCCC
Q 002071 262 VEALDVS-SSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES-VAFM-MGST 338 (973)
Q Consensus 262 ~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 338 (973)
+..+... ....... .....-.+++-+|++|++..........+...+.......++|++|.... +... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2211110 0000000 00011124567999999977655555667777666556677887775432 1111 1113
Q ss_pred CeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 339 DIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 339 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
..+.+.+++.++..+.+.+.+...+.... .+....|++.++|.|-.+..
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 47899999999999999887643322111 34567899999999976443
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.29 E-value=1e-06 Score=96.78 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=54.9
Q ss_pred HhhcccccEEEecc-cccccccccccC-ccccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCcccc
Q 002071 594 FEELTSLRAIEVSK-LFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQGIG 670 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~-~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~~i~ 670 (973)
+..+.+|++|+|++ |.++ .+| ..++.|.+|++|+|++|.|+.+| ..|.+|++|++|+|++|. +..+|..+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 100 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQ-----HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV 100 (347)
T ss_dssp SCSCSCCSEEECCSCSSCC-----EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTT
T ss_pred CCCCCCeeEEEccCCCCCC-----CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHc
Confidence 56666777777774 4443 343 45677777777777777777554 356777777777777776 666665544
Q ss_pred CCCCcceeecCCCC
Q 002071 671 KLVNMKHLLDDKTD 684 (973)
Q Consensus 671 ~L~~L~~L~l~~~~ 684 (973)
...+|++|++.+|.
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 43347777777664
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.26 E-value=5e-06 Score=93.68 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=97.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCc--eEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFD--KILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
...+.|+|.+|+||||||+.+++. ....+. .+++++... +..++...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEK------FLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHHH------HHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHHH------HHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 567999999999999999999983 333332 345554332 334444444321 11 12333344
Q ss_pred CCcEEEEEecCCCCCc--cChhhHHhhhcC-CCCCcEEEEEcCCh---------HHHHHhCCCCeeeCCCCCHHHHHHHH
Q 002071 288 GKRFFLVLDDVWDGDY--MKWEPFYHCLKN-GLPESKILVTTRKE---------SVAFMMGSTDIIPVQELAEEECWLLF 355 (973)
Q Consensus 288 ~kr~LlVlDdvw~~~~--~~w~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 355 (973)
.+.-+|+|||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999976432 122334444422 23567888888752 23333444568899999999999999
Q ss_pred HHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 356 NRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
.+.+...+.. .+ .++...|++.+.|.+-.+
T Consensus 273 ~~~~~~~~~~-i~---~e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 273 RKMLEIEHGE-LP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHHHHTCC-CC---TTHHHHHHHHCCSCHHHH
T ss_pred HHHHHHcCCC-CC---HHHHHHHHHhcCCCHHHH
Confidence 8876432211 11 233567888889888543
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.23 E-value=5.1e-05 Score=84.40 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=56.7
Q ss_pred CCccccccCccEEEEecCCCC----CcCCC--CCCcCcccceeccccccceeeCcccccccCCCCCcccEeecccccccc
Q 002071 808 PGWMMPLTNLRSLTLEKCEKC----KQIPP--LGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWMEEFE 881 (973)
Q Consensus 808 p~~~~~l~~L~~L~L~~~~~~----~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~ 881 (973)
+..|..|++|+.+.+.++... ..++. +..|++|+.+.|.. +++.++...+. .+++|+.+.+.. ++.
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~----~c~~L~~l~lp~--~l~ 335 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG----GNRKVTQLTIPA--NVT 335 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT----TCCSCCEEEECT--TCC
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc----CCCCccEEEECc--ccc
Confidence 344556777777777665432 12332 66677777777753 35555433221 345666666532 232
Q ss_pred cccccccCCCccCcccccceeeeccCccCCCCCC-CCCCCC-CcceEEEccC
Q 002071 882 EWDYGITGMGSTSIMPCLSYLAIISCPKLKALPD-HFHQMT-TLKELYILGC 931 (973)
Q Consensus 882 ~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~-~l~~l~-~L~~L~i~~c 931 (973)
.+.. . --..+ +|+.|++.++ .+..++. .+.+++ ++..|.+-.+
T Consensus 336 ~I~~----~-aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 336 QINF----S-AFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EECT----T-SSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEcH----H-hCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 2221 0 01124 6777777776 3444443 334453 6677777654
No 167
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.22 E-value=2e-05 Score=87.11 Aligned_cols=196 Identities=12% Similarity=0.081 Sum_probs=105.6
Q ss_pred CceecchhHHHH---HHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEe----CccccHH
Q 002071 183 EEICGRVSEKNE---LISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCV----SEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s~~~~~~ 255 (973)
.+++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+.+. ..... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccchh
Confidence 569999988766 444443321 22368999999999999999999874 22211 1122221 1223333
Q ss_pred HHHHHHHHHhcCC---------------------C-------CC--CCcHHHHHHHHHHHh-----cCC----cEEEEEe
Q 002071 256 RIARAIVEALDVS---------------------S-------SG--LGEFQSLLKTISKSI-----TGK----RFFLVLD 296 (973)
Q Consensus 256 ~~~~~i~~~l~~~---------------------~-------~~--~~~~~~~~~~l~~~l-----~~k----r~LlVlD 296 (973)
+.+.+..+..... . .+ ..-...+...+.... .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 3443333331110 0 00 000122222222211 233 3499999
Q ss_pred cCCCCCccChhhHHhhhcCCCCCcEEEEEcCC-------------hHH-HHHhCCCCeeeCCCCCHHHHHHHHHHHhccC
Q 002071 297 DVWDGDYMKWEPFYHCLKNGLPESKILVTTRK-------------ESV-AFMMGSTDIIPVQELAEEECWLLFNRIAFFG 362 (973)
Q Consensus 297 dvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~-------------~~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 362 (973)
++........+.+...+...... .++++|.. ..+ .....-...+.+.+++.++..+++.+.+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99877655566666666544333 34444431 011 1112223457999999999999999876543
Q ss_pred CCcccchhHHHHHHHHHHhcC-CchHHHH
Q 002071 363 RPIEECVKLEKIGRKIAGKCR-GLPLTTK 390 (973)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~~c~-GlPLai~ 390 (973)
..... .+....|++.+. |.|-.+.
T Consensus 276 ~~~~~----~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 276 DVEMS----EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp TCCBC----HHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCC----HHHHHHHHHHhcCCCHHHHH
Confidence 32222 345567888887 7775443
No 168
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=2.5e-06 Score=92.73 Aligned_cols=295 Identities=13% Similarity=0.019 Sum_probs=157.0
Q ss_pred cceEEEEEEccCCCCCCccccC-CCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccc-cCccc
Q 002071 545 EKVCHLMLSIHEGAPFPISTCR-IKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILE-IPTNV 622 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~-lp~~i 622 (973)
..+.++.+...-.......+.. +++|+.|+++++.+..... .. ..++.++.+.+..+.+....+.. .|...
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~----~~---~~~~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSG----KA---GTYPNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEE----SS---SSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecC----cc---ccccccccccccccccCHHHhcccccccc
Confidence 4566666654321100111222 7889999999987631010 01 11222566666664333211111 12222
Q ss_pred cCCCCCcEEEecCCCccccch-hhhccccccEEecCCCCCCcccC-ccccCCCCcceeecCCCCCCCcccccCCCccccc
Q 002071 623 KRLVHLRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCYGLKELP-QGIGKLVNMKHLLDDKTDSLGHMPVGIGRLTSLR 700 (973)
Q Consensus 623 ~~L~~L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 700 (973)
..+.+|+.|+|.. .++.++. .|.+|.+|+.|++.++. +..++ ..+..+.++..+........ .....+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~-------~~~~~i~ 168 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAY-------RFKNRWE 168 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHH-------HTSTTTT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhh-------hcccccc
Confidence 3399999999999 8888874 58999999999999987 54554 45666666766655432100 0000000
Q ss_pred cCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchH
Q 002071 701 TLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDD 780 (973)
Q Consensus 701 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 780 (973)
...+..+.+|+. .... .............-....++..+.+...-. .
T Consensus 169 -----------------~~~f~~~~~L~~--~i~~---~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-----------~ 215 (329)
T 3sb4_A 169 -----------------HFAFIEGEPLET--TIQV---GAMGKLEDEIMKAGLQPRDINFLTIEGKLD-----------N 215 (329)
T ss_dssp -----------------TSCEEESCCCEE--EEEE---CTTCCHHHHHHHTTCCGGGCSEEEEEECCC-----------H
T ss_pred -----------------ccccccccccce--eEEe---cCCCcHHHHHhhcccCccccceEEEeeeec-----------H
Confidence 111222222210 0000 001111111111112334556666654321 0
Q ss_pred HHHHhhc-CCCCCccEEEEeeecCCCCCCC-ccccccCccEEEEecCCCCCcCCC--CCCcCccc-ceeccccccceeeC
Q 002071 781 QQLLEAL-QPPLNLKELLIGLYRGNTVFPG-WMMPLTNLRSLTLEKCEKCKQIPP--LGKLSSLE-KLMIWGLKSVKRVA 855 (973)
Q Consensus 781 ~~~l~~l-~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~-~L~L~~~~~l~~~~ 855 (973)
. ....+ ..+++|+.|+|.+|.++. +|. .|..|.+|+.|+|.++ ...++. +.++++|+ .|.|.+ +++.++
T Consensus 216 ~-~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 216 A-DFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp H-HHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEEC
T ss_pred H-HHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEc
Confidence 1 11111 126789999999888777 655 4668999999999887 344554 78899999 999976 566665
Q ss_pred cccccccCCCCCcccEeecccccccccccccccCCCccCcccccceeee
Q 002071 856 NEFLGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAI 904 (973)
Q Consensus 856 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i 904 (973)
...+ ..+++|+.|.+... ++..+.. ..-..+++|+.|+.
T Consensus 290 ~~aF----~~c~~L~~l~l~~n-~i~~I~~-----~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 290 FGAF----MGCDNLRYVLATGD-KITTLGD-----ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTT----TTCTTEEEEEECSS-CCCEECT-----TTTCTTCCCCEEEC
T ss_pred hhhh----hCCccCCEEEeCCC-ccCccch-----hhhcCCcchhhhcc
Confidence 4332 25778888877432 3333321 11124677887764
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.15 E-value=2.3e-05 Score=88.04 Aligned_cols=176 Identities=17% Similarity=0.193 Sum_probs=100.1
Q ss_pred CceecchhHH---HHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEK---NELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
.+++|.+..+ ..+...+... ..+.+.|+|.+|+||||+|+.+++. ....| +.+.... ..... .+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~-~~~~~-ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT-SGVKE-IR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT-CCHHH-HH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc-CCHHH-HH
Confidence 4688888777 5666666432 4468999999999999999999873 32222 1122111 11111 11
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHH-HHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEE-EcCChH--H-HHH
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTIS-KSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILV-TTRKES--V-AFM 334 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iiv-Ttr~~~--v-~~~ 334 (973)
.++ .... ....+++.+|+||++........+.+...+..+ ...+|. ||.+.. + ...
T Consensus 93 ~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 EAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 111 1111 112467899999999876655566666666653 233443 444432 1 222
Q ss_pred hCCCCeeeCCCCCHHHHHHHHHHHhccCCCc---ccchhHHHHHHHHHHhcCCchHHHH
Q 002071 335 MGSTDIIPVQELAEEECWLLFNRIAFFGRPI---EECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
.....++.+.+++.++..+++.+.+...... ....--.+....|++.++|.+-.+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 3334588999999999999998876531110 0001113456678888888886443
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=5.1e-07 Score=99.61 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=53.0
Q ss_pred CCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccc-cCCCCCcEEEecCCCccc-----c
Q 002071 568 KRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNV-KRLVHLRYLNLSHQSIEK-----L 641 (973)
Q Consensus 568 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i-~~L~~L~~L~Ls~~~i~~-----L 641 (973)
++|++|+++++.+. ......+...+++|+.|+|++|.++......+...+ ....+|++|+|++|.|+. +
T Consensus 101 ~~L~~L~Ls~n~l~-----~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASCQLD-----PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTCCCC-----HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred CCceEEEecCCCCC-----HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH
Confidence 45566665555431 122233334445566666666544432222222222 134556666666665542 3
Q ss_pred chhhhccccccEEecCCCCCCcc-----cCccccCCCCcceeecCCCC
Q 002071 642 PETLCELYNLQKLDVSDCYGLKE-----LPQGIGKLVNMKHLLDDKTD 684 (973)
Q Consensus 642 p~~i~~L~~Lq~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~ 684 (973)
+..+..+++|++|+|++|. +.. ++..+..+++|++|++++|.
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 4444555556666666655 321 23344455556666665553
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.14 E-value=2.9e-06 Score=93.14 Aligned_cols=101 Identities=14% Similarity=0.074 Sum_probs=68.3
Q ss_pred EEEecccccccccccccCccccCCCCCcEEEecC-CCccccc-hhhhccccccEEecCCCCCCcccC-ccccCCCCccee
Q 002071 602 AIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSH-QSIEKLP-ETLCELYNLQKLDVSDCYGLKELP-QGIGKLVNMKHL 678 (973)
Q Consensus 602 ~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~-~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~~L 678 (973)
.++++++ +.+..+|. +..+.+|++|+|++ |.|..+| ..|.+|.+|++|+|++|. +..+| ..+..|++|++|
T Consensus 12 ~v~~~~~----n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRD----GALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSS----CCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEE
T ss_pred EEEcCCC----CCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEE
Confidence 3466652 14556777 88888888888885 7788776 467888888888888886 55554 456788888888
Q ss_pred ecCCCCCCCcccccCCCccccccCCeeeeCC
Q 002071 679 LDDKTDSLGHMPVGIGRLTSLRTLVEFHVSG 709 (973)
Q Consensus 679 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 709 (973)
+|++|.. ..+|..+.....|+.|++..+..
T Consensus 86 ~l~~N~l-~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 86 NLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp ECCSSCC-SCCCSTTTCSCCCCEEECCSSCC
T ss_pred eCCCCcc-ceeCHHHcccCCceEEEeeCCCc
Confidence 8888744 45565543333377776555443
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.4e-05 Score=87.73 Aligned_cols=196 Identities=11% Similarity=0.037 Sum_probs=106.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcch-h-hhc--cCce----------------
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNND-E-VNR--KFDK---------------- 242 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~-~~~--~F~~---------------- 242 (973)
.+++|.+..++.+.+++.... ...+ +.|+|++|+||||+|+.++... . ..+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 468999998888888772221 1233 8999999999999999887621 0 000 0010
Q ss_pred ----EEEEEeCccc-cHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC
Q 002071 243 ----ILWVCVSEAF-EEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL 317 (973)
Q Consensus 243 ----~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~ 317 (973)
.+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|||++..-+....+.+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1111111100 000012222222211000 00000 00 0023467799999998766555666777776555
Q ss_pred CCcEEEEEcCChH-HH-HHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHH
Q 002071 318 PESKILVTTRKES-VA-FMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAI 392 (973)
Q Consensus 318 ~gs~iivTtr~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 392 (973)
.+..+|++|.... +. ........+++.+++.++..+.+.+.+...+..... .+....|++.++|.+-.+..+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 5677887776532 21 122334689999999999999998876432221110 234567888999998654433
No 173
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.11 E-value=4e-07 Score=100.40 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=99.6
Q ss_pred cceEEEEEEccCCCC--CCccccCCCCceEEEeCCcccCCCCCchhhHHHHH-hhcccccEEEecccccccccccccCcc
Q 002071 545 EKVCHLMLSIHEGAP--FPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELF-EELTSLRAIEVSKLFYTKSTILEIPTN 621 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~~~~~~~~~lp~~ 621 (973)
..++.+.+..+.+.. .......+++|+.|++++|.+.... ...+...+ ...+.|++|+|++|.++......++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~--~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA--CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH--HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH--HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 567888887776542 1111234668999999998752111 11122223 346889999999988776555667777
Q ss_pred ccCCCCCcEEEecCCCcc-----ccchhhhccccccEEecCCCCCCc-----ccCccccCCCCcceeecCCCCC
Q 002071 622 VKRLVHLRYLNLSHQSIE-----KLPETLCELYNLQKLDVSDCYGLK-----ELPQGIGKLVNMKHLLDDKTDS 685 (973)
Q Consensus 622 i~~L~~L~~L~Ls~~~i~-----~Lp~~i~~L~~Lq~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~~ 685 (973)
+..+++|++|+|++|.|. .++..+...++|++|+|++|. +. .++..+...++|++|++++|..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 888999999999999987 346677888999999999998 54 3455566789999999999954
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=1.3e-05 Score=92.42 Aligned_cols=198 Identities=15% Similarity=0.166 Sum_probs=110.5
Q ss_pred CceecchhHHHHHHHHhcCCCc-----------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc
Q 002071 183 EEICGRVSEKNELISKLLCESS-----------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA 251 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (973)
.+++|++..++++.+++..... .+.+..+.+.|+|++|+||||+|+.+++. . .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 5699999999999999865110 00123468999999999999999999873 2 12 2344555554
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccC---hhhHHhhhcCCCCCcEEEEEcCC
Q 002071 252 FEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMK---WEPFYHCLKNGLPESKILVTTRK 328 (973)
Q Consensus 252 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~---w~~l~~~l~~~~~gs~iivTtr~ 328 (973)
.... +....+........-..-...... .....+++.+|+||++....... +..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4433 222222221110000000000000 00123678899999997643222 24444444432 3345555543
Q ss_pred hH---HHHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC-chHHHHHHHh
Q 002071 329 ES---VAFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG-LPLTTKAIGS 394 (973)
Q Consensus 329 ~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~ 394 (973)
.. +.........+.+.+++.++..+.+...+...+.... .+....|++.++| ++-|+..+..
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 2222222457899999999999999877653322122 2235678888998 4455665543
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.10 E-value=2.2e-05 Score=83.23 Aligned_cols=183 Identities=19% Similarity=0.127 Sum_probs=100.2
Q ss_pred CCceecchhHHHHHHHHhcCCCcc-------CCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccH
Q 002071 182 EEEICGRVSEKNELISKLLCESSE-------HQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEE 254 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (973)
-.+++|.+..++++.+.+...... +-...+-+.|+|++|+||||||+.+++. .... .+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH-
Confidence 456999999999998877432000 0123456899999999999999999873 2221 22333222110
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHH-HHHHHHHHhcCCcEEEEEecCCCC-----------CccChhhHHhhhc-----CCC
Q 002071 255 FRIARAIVEALDVSSSGLGEFQS-LLKTISKSITGKRFFLVLDDVWDG-----------DYMKWEPFYHCLK-----NGL 317 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdvw~~-----------~~~~w~~l~~~l~-----~~~ 317 (973)
. ....... ....+......+..+|+||+++.. +......+...+. ...
T Consensus 90 -------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 -------------K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0 0111111 222222333456689999999542 1111122333322 123
Q ss_pred CCcEEEEEcCChHHH-H-HhC---CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC-chHHHH
Q 002071 318 PESKILVTTRKESVA-F-MMG---STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG-LPLTTK 390 (973)
Q Consensus 318 ~gs~iivTtr~~~v~-~-~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~ 390 (973)
.+..||.||...... . ... ....+.+...+.++..++|...+..... ..... ...+++.+.| .|-.+.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 456777787754321 1 111 1347899999999999999887643221 11112 3556677766 443443
No 176
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.09 E-value=4.6e-05 Score=81.86 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=91.5
Q ss_pred ceecchhHHHHHHHHhcCCC---------ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccH
Q 002071 184 EICGRVSEKNELISKLLCES---------SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEE 254 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (973)
+++|.+..++.+.+.+.... -........+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888887776553210 001234567899999999999999988774222222211123333311
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCC---------CccChhhHHhhhcCCCCCcEEEEE
Q 002071 255 FRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDG---------DYMKWEPFYHCLKNGLPESKILVT 325 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---------~~~~w~~l~~~l~~~~~gs~iivT 325 (973)
.+.....+ .........+... +.-+|+||+++.. .......+...+.....+..||+|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11110000 1111222222222 3459999999743 223335566666666667788888
Q ss_pred cCChHHHHH--hC------CCCeeeCCCCCHHHHHHHHHHHhcc
Q 002071 326 TRKESVAFM--MG------STDIIPVQELAEEECWLLFNRIAFF 361 (973)
Q Consensus 326 tr~~~v~~~--~~------~~~~~~l~~L~~~~~~~lf~~~~~~ 361 (973)
|........ .. ....+.+.+++.++..+++.+.+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 865432111 11 1257899999999999999887654
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.08 E-value=6.9e-05 Score=78.25 Aligned_cols=187 Identities=13% Similarity=0.058 Sum_probs=97.9
Q ss_pred CceecchhHHHHHHHHhc---CCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLL---CESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (973)
.+++|.+..++++.+.+. .... .+....+.+.|+|++|+|||++|+.+++. ... ..+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQV---PFLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTC---CEEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEechHHHHhh--
Confidence 468999888777765542 1110 00123456889999999999999999873 222 2344444332110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCC------------CccChhhHHhh---hcC--CCCC
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDG------------DYMKWEPFYHC---LKN--GLPE 319 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------------~~~~w~~l~~~---l~~--~~~g 319 (973)
........+...+.........+|+||+++.. .......+... +.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00011112222233333456789999999753 11112222222 222 1234
Q ss_pred cEEEEEcCChHHH-HH-hC---CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHH
Q 002071 320 SKILVTTRKESVA-FM-MG---STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAI 392 (973)
Q Consensus 320 s~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 392 (973)
..||.||...... .. .. ....+.+...+.++..+++...+....... . .......+++.+.|.+- .|..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~--~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-S--STFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-T--HHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-c--hhhHHHHHHHHCCCCCHHHHHHH
Confidence 5666666554321 11 11 134678999999999999988764322211 1 12234678888888754 44433
No 178
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.08 E-value=1.7e-05 Score=88.31 Aligned_cols=217 Identities=14% Similarity=0.135 Sum_probs=116.4
Q ss_pred HhhcccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccccc-hhhhccccccEEecCCCCCCcccCccccC
Q 002071 594 FEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEKLP-ETLCELYNLQKLDVSDCYGLKELPQGIGK 671 (973)
Q Consensus 594 ~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~ 671 (973)
|.++ .|+.+.+..+ +..++ ..+.+ .+|+.+.+.. .++.++ ..|.++.+|+.+++.+|. +..+|.....
T Consensus 132 F~~~-~L~~i~l~~~------i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~ 201 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG------LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV 201 (401)
T ss_dssp TTTC-CCSEEECCTT------CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT
T ss_pred cccC-CccEEEeCCC------ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe
Confidence 4443 5777776642 33333 23333 3577777764 455554 456667777777776665 6666655444
Q ss_pred CCCcceeecCCCCCCCccc-ccCCCccccccCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhh
Q 002071 672 LVNMKHLLDDKTDSLGHMP-VGIGRLTSLRTLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRL 750 (973)
Q Consensus 672 L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~ 750 (973)
..+|+.+.+..+ +..++ ..+..+++|+.+.+... +.......|.. .+|+.+.+.. .+..++ ..
T Consensus 202 ~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-----l~~I~~~aF~~-~~L~~i~lp~--~i~~I~------~~ 265 (401)
T 4fdw_A 202 YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-----VSTIGQEAFRE-SGITTVKLPN--GVTNIA------SR 265 (401)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-----CCEECTTTTTT-CCCSEEEEET--TCCEEC------TT
T ss_pred ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-----ccCcccccccc-CCccEEEeCC--CccEEC------hh
Confidence 566777776643 23333 33556666666543221 11111222333 3454444311 111111 11
Q ss_pred hccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEEeeecCCCCC-CCccccccCccEEEEecCCCCC
Q 002071 751 ELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLIGLYRGNTVF-PGWMMPLTNLRSLTLEKCEKCK 829 (973)
Q Consensus 751 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~ 829 (973)
.+..+.+|+.+.+..+....... .. -....+..+++|+.+.|.. .... + ...|..|++|+.|.|..+ ..
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~--~~----I~~~aF~~c~~L~~l~l~~-~i~~-I~~~aF~~c~~L~~l~lp~~--l~ 335 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPE--AM----IHPYCLEGCPKLARFEIPE-SIRI-LGQGLLGGNRKVTQLTIPAN--VT 335 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTT--CE----ECTTTTTTCTTCCEECCCT-TCCE-ECTTTTTTCCSCCEEEECTT--CC
T ss_pred HhhCCCCCCEEEeCCccccCCcc--cE----ECHHHhhCCccCCeEEeCC-ceEE-EhhhhhcCCCCccEEEECcc--cc
Confidence 45677888888887654320000 00 0012456678888888873 3444 4 345667889999999665 23
Q ss_pred cCCC--CCCcCcccceeccc
Q 002071 830 QIPP--LGKLSSLEKLMIWG 847 (973)
Q Consensus 830 ~l~~--l~~l~~L~~L~L~~ 847 (973)
.++. +.++ +|+.|.+.+
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EECTTSSSSS-CCCEEEECC
T ss_pred EEcHHhCCCC-CCCEEEEcC
Confidence 3433 7777 899998876
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.06 E-value=6.3e-05 Score=81.38 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=87.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.|+|++|+||||||+.+++.. ...-..++++++. ++...+...+... .... +...+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHhc-C
Confidence 4578999999999999999998842 2111234555433 2333333333211 1111 122222 3
Q ss_pred cEEEEEecCCCCCc--cChhhHHhhhcC-CCCCcEEEEEcCCh---------HHHHHhCCCCeeeCCCCCHHHHHHHHHH
Q 002071 290 RFFLVLDDVWDGDY--MKWEPFYHCLKN-GLPESKILVTTRKE---------SVAFMMGSTDIIPVQELAEEECWLLFNR 357 (973)
Q Consensus 290 r~LlVlDdvw~~~~--~~w~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (973)
.-+|+|||+..... ...+.+...+.. ...|..||+||... .+...+.....+.+.+ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 66999999976432 112334444322 12456788887632 2233344446789999 99999999998
Q ss_pred HhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 358 IAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
.+........ .++...|++.+ |.+-
T Consensus 178 ~~~~~~~~l~----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNLELR----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTCCCC----HHHHHHHHHHC-SSHH
T ss_pred HHHhcCCCCC----HHHHHHHHHhC-CCHH
Confidence 8753222111 34456677777 7654
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.06 E-value=8.9e-05 Score=80.34 Aligned_cols=171 Identities=12% Similarity=0.087 Sum_probs=104.7
Q ss_pred hhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh--------------------ccCceEEEEEe
Q 002071 189 VSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN--------------------RKFDKILWVCV 248 (973)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~ 248 (973)
+...+.+...+... .-.+.+.++|++|+||||+|+.+.+.-.-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 34455666666432 235679999999999999999987631110 1122 222322
Q ss_pred CccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-----cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEE
Q 002071 249 SEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI-----TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKIL 323 (973)
Q Consensus 249 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~ii 323 (973)
.. .......+++.+ +.+.+ .+++-++|+|+++..+....+.+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001122232222 22222 3567899999998776556667777776655677777
Q ss_pred EEcCChH-H-HHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHHHHH
Q 002071 324 VTTRKES-V-AFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKAIG 393 (973)
Q Consensus 324 vTtr~~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 393 (973)
++|.+.. + .........+.+.++++++..+.+.+.. . .+ .+....+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 7776643 2 2222335689999999999999998875 1 11 2345678999999997665443
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.04 E-value=1.9e-05 Score=85.54 Aligned_cols=173 Identities=16% Similarity=0.126 Sum_probs=102.6
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|.+..++.+.+++.... ..+++.+.|++|+||||+|+.+++. .. ...+.++.+.. ... ..+.++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CHH-HHHHHH
Confidence 569999999999999986432 3467888899999999999999873 21 23444554332 121 111111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCC-ccChhhHHhhhcCCCCCcEEEEEcCChH-----HHHHhC
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGD-YMKWEPFYHCLKNGLPESKILVTTRKES-----VAFMMG 336 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-~~~w~~l~~~l~~~~~gs~iivTtr~~~-----v~~~~~ 336 (973)
...... ....+++-+|+||++.... ....+.+...+.....+..+|+||.... +...
T Consensus 94 ~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR-- 156 (324)
T 3u61_B 94 TNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR-- 156 (324)
T ss_dssp HHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--
T ss_pred HHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--
Confidence 111000 0012468899999998765 4445556665554445678888887643 2222
Q ss_pred CCCeeeCCCCCHHHHHHHHH-------HHhccCCCcccchhHHHHHHHHHHhcCCchHH
Q 002071 337 STDIIPVQELAEEECWLLFN-------RIAFFGRPIEECVKLEKIGRKIAGKCRGLPLT 388 (973)
Q Consensus 337 ~~~~~~l~~L~~~~~~~lf~-------~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 388 (973)
...+.+.+++.++-.+++. ..+...+.... + .+....|++.++|.+-.
T Consensus 157 -~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 157 -CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-D--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-C--HHHHHHHHHHTCSCTTH
T ss_pred -CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-c--HHHHHHHHHhCCCCHHH
Confidence 2478999999888543332 22221111111 1 25567788888887753
No 182
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.03 E-value=8.6e-06 Score=80.14 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=37.9
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..++||+.+++++.+.+... ..+.+.|+|.+|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998542 3446789999999999999999874
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.98 E-value=2e-06 Score=93.89 Aligned_cols=39 Identities=8% Similarity=-0.031 Sum_probs=23.0
Q ss_pred CCCCccEEEEeeecCCC----CCCCccccccCccEEEEecCCC
Q 002071 789 PPLNLKELLIGLYRGNT----VFPGWMMPLTNLRSLTLEKCEK 827 (973)
Q Consensus 789 ~~~~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~L~~~~~ 827 (973)
.+++|++|+|+.|.+.. .++..+..+++|+.|+|++|.+
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 34667777776665433 1233344567777777777654
No 184
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=7.8e-05 Score=81.19 Aligned_cols=175 Identities=10% Similarity=0.067 Sum_probs=105.4
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCc-eEEEEEeCccccHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFD-KILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 261 (973)
.+++|.+..++.+...+... ....+.++|++|+||||+|+.+++... ...+. .+..++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 45789888888888877532 222389999999999999999987311 11111 122222222111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHH------hcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH-HH-H
Q 002071 262 VEALDVSSSGLGEFQSLLKTISKS------ITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES-VA-F 333 (973)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~------l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~-v~-~ 333 (973)
.+.+.+.+... +.+.+-++|+|++........+.+...+......+++|++|.... +. .
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 12222222221 123477899999976655556667666655556677777776432 11 1
Q ss_pred HhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHH
Q 002071 334 MMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTT 389 (973)
Q Consensus 334 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 389 (973)
.......+.+.+++.++..+.+.+.+........ .+..+.|++.++|.+--+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 1222457899999999999888876632221111 345677888999988643
No 185
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=3.9e-06 Score=82.48 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=62.0
Q ss_pred cCCCCceEEEeCCc-ccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccc---
Q 002071 565 CRIKRMRSLLIGGV-VFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEK--- 640 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~--- 640 (973)
...+.|++|.++++ .+.... ...+...+...+.|++|+|++|.++......+...+....+|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 44566666666665 431100 011233345556666666666655543344444455555666666666666652
Q ss_pred --cchhhhccccccEEec--CCCCCCcc-----cCccccCCCCcceeecCCC
Q 002071 641 --LPETLCELYNLQKLDV--SDCYGLKE-----LPQGIGKLVNMKHLLDDKT 683 (973)
Q Consensus 641 --Lp~~i~~L~~Lq~L~L--~~~~~~~~-----lp~~i~~L~~L~~L~l~~~ 683 (973)
+...+...+.|++|+| ++|. +.. +...+...++|++|++++|
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4455555666666666 5554 321 3333444566666666665
No 186
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.90 E-value=0.00026 Score=78.90 Aligned_cols=308 Identities=12% Similarity=-0.013 Sum_probs=157.2
Q ss_pred ccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccc
Q 002071 562 ISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEK 640 (973)
Q Consensus 562 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~ 640 (973)
.++..|.+|+++.+...- ..+....|.++..|+.+++..+ +..++ ..+..+..|+.+.+..+ +..
T Consensus 65 ~AF~~c~~L~~i~lp~~i-------~~I~~~aF~~c~~L~~i~lp~~------l~~I~~~aF~~c~~L~~i~~p~~-l~~ 130 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTV-------REIGEFAFENCSKLEIINIPDS------VKMIGRCTFSGCYALKSILLPLM-LKS 130 (394)
T ss_dssp TTTTTCTTEEEEECCTTC-------CEECTTTTTTCTTCCEECCCTT------CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred HHhhCCCCceEEEeCCCc-------cCcchhHhhCCCCCcEEEeCCC------ceEccchhhcccccchhhcccCc-eee
Confidence 456778888888886432 2233445788888888888752 33332 34666777777666543 333
Q ss_pred cc-hhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCCCCCCccc-ccCCCccccccCCeeeeCCCCCCCCCCc
Q 002071 641 LP-ETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKTDSLGHMP-VGIGRLTSLRTLVEFHVSGGGGVGGSNA 718 (973)
Q Consensus 641 Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~ 718 (973)
++ ..+.++..+.......... .-...+..+.+|+.+.+.++. ..++ ..+..+++|+.+.+... +.....
T Consensus 131 i~~~aF~~~~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-----~~~I~~ 201 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGVTV--IGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-----LKIIRD 201 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-----CCEECT
T ss_pred ecceeeecccccccccCccccc--cchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-----ceEeCc
Confidence 32 3344444433333322211 112346677788888776542 2233 33566667776653211 111112
Q ss_pred cCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchHHHHHhhcCCCCCccEEEE
Q 002071 719 CRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDDQQLLEALQPPLNLKELLI 798 (973)
Q Consensus 719 ~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L 798 (973)
..+..+..|+.+........ +. .......+|+.+.+..... .. --..+..+.+|+.+.+
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~--i~-------~~~~~~~~l~~i~ip~~~~-~i-----------~~~~f~~~~~l~~~~~ 260 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYY--LG-------DFALSKTGVKNIIIPDSFT-EL-----------GKSVFYGCTDLESISI 260 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCE--EC-------TTTTTTCCCCEEEECTTCC-EE-----------CSSTTTTCSSCCEEEE
T ss_pred hhhccccccceeecCCCceE--ee-------hhhcccCCCceEEECCCce-ec-----------ccccccccccceeEEc
Confidence 33445555555443221100 00 0122345666666532210 00 0012344567777777
Q ss_pred eeecCCCCCCCccccccCccEEEEecCCCCCcCCCCCCcCcccceeccccccceeeCcccccccCCCCCcccEeeccccc
Q 002071 799 GLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPPLGKLSSLEKLMIWGLKSVKRVANEFLGIEIIAFPKLKSLTFYWME 878 (973)
Q Consensus 799 ~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~f~~L~~L~l~~~~ 878 (973)
..+...- -...+..+.+|+.+.+...... -..+..+++|+.+.+.. +++.++.... ..+.+|+.+.+.+
T Consensus 261 ~~~~~~i-~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~aF----~~c~~L~~i~lp~-- 329 (394)
T 4fs7_A 261 QNNKLRI-GGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEAF----ESCTSLVSIDLPY-- 329 (394)
T ss_dssp CCTTCEE-CSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTTT----TTCTTCCEECCCT--
T ss_pred CCCccee-eccccccccccceeccCceeec--ccccccccccccccccc--ccceechhhh----cCCCCCCEEEeCC--
Confidence 6543221 2334556777777766544211 11255677788777743 3555543322 1356677776632
Q ss_pred ccccccccccCCCccCcccccceeeeccCccCCCCCC-CCCCCCCcceEEEccC
Q 002071 879 EFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPD-HFHQMTTLKELYILGC 931 (973)
Q Consensus 879 ~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~-~l~~l~~L~~L~i~~c 931 (973)
+++.+.. .--..+++|+.+.|..+ ++.|+. .+.+|++|+++++..+
T Consensus 330 ~v~~I~~-----~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 330 LVEEIGK-----RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCCEECT-----TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccEEhH-----HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 2332221 01113577888888543 666655 4567888888888654
No 187
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.89 E-value=0.00015 Score=76.17 Aligned_cols=170 Identities=19% Similarity=0.168 Sum_probs=89.3
Q ss_pred ceecchhHHHHHHH-------HhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH
Q 002071 184 EICGRVSEKNELIS-------KLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 184 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (973)
.++|....+++++. .+... .....+.+.|+|++|+|||++|+.+++. .. +.. +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EEEeCHHH-----
Confidence 46777766666655 22211 1345778999999999999999999873 22 222 22322221
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCC------CccC---h-hhHHhhhcC---CCCCcEEE
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDG------DYMK---W-EPFYHCLKN---GLPESKIL 323 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------~~~~---w-~~l~~~l~~---~~~gs~ii 323 (973)
+.+. ........+...+......+..+|+||++... .... + +.+...+.. ......||
T Consensus 101 --------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 --------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp --------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred --------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0000 00000112222333334467889999998542 1111 1 222222221 12234466
Q ss_pred EEcCChHHHHH---hCC-CCeeeCCCCCH-HHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC
Q 002071 324 VTTRKESVAFM---MGS-TDIIPVQELAE-EECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG 384 (973)
Q Consensus 324 vTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 384 (973)
.||........ .+. ...+.+.+++. ++...++.+.. . .. .+....|++.+.|
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTT
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcC
Confidence 67776644332 121 45688999988 66666665532 1 11 2335667777777
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.88 E-value=3e-06 Score=92.56 Aligned_cols=115 Identities=15% Similarity=0.228 Sum_probs=69.8
Q ss_pred ccCCCCceEEEeCCcccCCCCC---chhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccc
Q 002071 564 TCRIKRMRSLLIGGVVFDHSSL---DGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEK 640 (973)
Q Consensus 564 ~~~~~~Lr~L~l~~~~~~~~~~---~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~ 640 (973)
..++++|++|.+.+.......+ ....+..++..+++|+.|+|++|. .+ .++. + .+++|++|+|..|.+..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~----~l-~l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN----NL-SIGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB----TC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC----Cc-eecc-c-cCCCCcEEEEecCCCCh
Confidence 4466788888776542211011 011144567889999999998852 11 3444 4 38899999999887652
Q ss_pred -cchhhh--ccccccEEecCCCC-------CCcccCccc--cCCCCcceeecCCCCC
Q 002071 641 -LPETLC--ELYNLQKLDVSDCY-------GLKELPQGI--GKLVNMKHLLDDKTDS 685 (973)
Q Consensus 641 -Lp~~i~--~L~~Lq~L~L~~~~-------~~~~lp~~i--~~L~~L~~L~l~~~~~ 685 (973)
-...+. ++++|++|+|+.+. .+..+...+ ..+++|++|++.+|..
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 223344 78999999986321 122222222 2578889998887754
No 189
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.87 E-value=8.9e-06 Score=76.34 Aligned_cols=115 Identities=13% Similarity=0.004 Sum_probs=69.7
Q ss_pred ceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHH
Q 002071 184 EICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVE 263 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 263 (973)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++... +..... + +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~-v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEF-V-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCC-E-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCE-E-EECCCCCcc---------
Confidence 578999999999887754321 223478999999999999999987421 111122 3 555432211
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh
Q 002071 264 ALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~ 329 (973)
..... .+... +.-.|+||+++.........+...+.......++|.||...
T Consensus 66 ---------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ---------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 11111 11111 23468999998776555566777775555566788777643
No 190
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.86 E-value=0.00038 Score=74.94 Aligned_cols=186 Identities=16% Similarity=0.089 Sum_probs=103.5
Q ss_pred CCceecchhHHHHHHHHhcCCC------ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 182 EEEICGRVSEKNELISKLLCES------SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
-.+++|.+..++.+.+.+.... .......+-|.++|++|+|||+||+.+++. .... .+.|+.+.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~~----- 86 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSSD----- 86 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHHH-----
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchHH-----
Confidence 3569999999999988772110 001223467899999999999999999873 2222 22333211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHhcCCcEEEEEecCCCCCcc-------C----hhhHHhhhc---CCCCCc
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTIS-KSITGKRFFLVLDDVWDGDYM-------K----WEPFYHCLK---NGLPES 320 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~~~-------~----w~~l~~~l~---~~~~gs 320 (973)
+ .... ....+.....+. ..-..+..+|+||++...... . ...+...+. ....+.
T Consensus 87 -l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 87 -L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp -H----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred -H----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 1 1100 011122222222 222456789999999643211 0 223333332 223455
Q ss_pred EEEEEcCChH-----HHHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC-chHHHHHHHh
Q 002071 321 KILVTTRKES-----VAFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG-LPLTTKAIGS 394 (973)
Q Consensus 321 ~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~ 394 (973)
.||.||.... +.. .-...+.+...+.++..++|...+........ ......|++.+.| .+-.|..+..
T Consensus 156 ~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666776532 222 22346788889999999999987754322112 2234678888877 4545554443
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.85 E-value=2e-05 Score=78.69 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=56.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
..+.|+|.+|+||||||+.+++. .......++|++++ .+...+...... .........+.+ .
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~-----~ 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD-----QTMNEKLDYIKK-----V 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC--------CCCHHHHHHHHH-----S
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc-----chHHHHHHHhcC-----C
Confidence 67899999999999999999984 33334456666553 334444332221 112222232221 2
Q ss_pred EEEEEecCCCCCccChhh--HHh-hhcCC-CCCcEEEEEcCCh
Q 002071 291 FFLVLDDVWDGDYMKWEP--FYH-CLKNG-LPESKILVTTRKE 329 (973)
Q Consensus 291 ~LlVlDdvw~~~~~~w~~--l~~-~l~~~-~~gs~iivTtr~~ 329 (973)
-+|||||++......|.. +.. .+... ..+.++|+||...
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 399999997654444432 322 23221 2456788888743
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=4e-06 Score=82.46 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=78.3
Q ss_pred hhHHHHHhhcccccEEEeccc-ccccccccccCccccCCCCCcEEEecCCCcc-----ccchhhhccccccEEecCCCCC
Q 002071 588 NILEELFEELTSLRAIEVSKL-FYTKSTILEIPTNVKRLVHLRYLNLSHQSIE-----KLPETLCELYNLQKLDVSDCYG 661 (973)
Q Consensus 588 ~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~-----~Lp~~i~~L~~Lq~L~L~~~~~ 661 (973)
..+...+...+.|++|+|++| .++......+...+....+|++|+|++|.|. .+...+...++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~- 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF- 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-
Confidence 345666888999999999998 8776556667777888999999999999987 356667777899999999998
Q ss_pred Ccc-----cCccccCCCCcceeec--CCCCC
Q 002071 662 LKE-----LPQGIGKLVNMKHLLD--DKTDS 685 (973)
Q Consensus 662 ~~~-----lp~~i~~L~~L~~L~l--~~~~~ 685 (973)
+.. +...+...++|++|++ ++|..
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 543 5667788889999999 66643
No 193
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=2.8e-06 Score=81.19 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=24.8
Q ss_pred cccceeeeccCccCC--CCCCCCCCCCCcceEEEccCCCccc
Q 002071 897 PCLSYLAIISCPKLK--ALPDHFHQMTTLKELYILGCAIPGV 936 (973)
Q Consensus 897 p~L~~L~i~~c~~l~--~lp~~l~~l~~L~~L~i~~c~~l~~ 936 (973)
++|+.|+|++|++++ .+. .+.++++|++|+|++|+.+.+
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 467777777777665 222 234567777777777775544
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.82 E-value=0.00052 Score=74.86 Aligned_cols=185 Identities=14% Similarity=0.059 Sum_probs=100.2
Q ss_pred CceecchhHHHHHHHHhcCC----C--ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLLCE----S--SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (973)
.+++|.+..++.+.+.+... . .......+-|.|+|++|+|||+||+.+++. .... .+.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------H
Confidence 46999999999988876311 0 001122345889999999999999999883 2222 2223222 1
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccC-----------hhhHHhhhcC---CCCCcEE
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMK-----------WEPFYHCLKN---GLPESKI 322 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~-----------w~~l~~~l~~---~~~gs~i 322 (973)
+. ... .+ .....+...+...-..+..+|+||++....... ...+...+.. ...+..|
T Consensus 120 l~----~~~----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV----SKW----MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh----hhh----cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 110 00 111111122222224578899999997532110 1223333321 2245556
Q ss_pred EEEcCChH-----HHHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC-chHHHHHHH
Q 002071 323 LVTTRKES-----VAFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG-LPLTTKAIG 393 (973)
Q Consensus 323 ivTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 393 (973)
|.||.... +.. .....+.+...+.++..++|...+........ ......|++.+.| .+-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666442 222 23457788999999999999887643221111 2234668888887 454455444
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.79 E-value=4.5e-05 Score=74.52 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=57.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.|+|++|+||||||+.+++.......+ .+++++ ..++...+.......... ..... +. +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~~----~~-~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKDT-----KFLKT----VL-N 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCCS-----HHHHH----HH-T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchHH-----HHHHH----hc-C
Confidence 4689999999999999999998843212222 233443 344444444443322111 12221 22 4
Q ss_pred cEEEEEecCCCCCccChh--hHHhhhcCC-CCCcEEEEEcCC
Q 002071 290 RFFLVLDDVWDGDYMKWE--PFYHCLKNG-LPESKILVTTRK 328 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~--~l~~~l~~~-~~gs~iivTtr~ 328 (973)
.-+|||||++....+.|. .+...+... ..|..+|+||..
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 568999999854334453 344434322 256788888864
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.78 E-value=0.00027 Score=77.26 Aligned_cols=187 Identities=10% Similarity=0.027 Sum_probs=101.8
Q ss_pred CceecchhHHHHHHHHhcCC----Cc--cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLLCE----SS--EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (973)
.+++|.+..++++.+.+... .. ......+.|.|+|++|+|||+||+.+++. ... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc---
Confidence 46899999999988877421 00 00123567899999999999999999873 221 234444432211
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHH-HHhcCCcEEEEEecCCCCCc-----------cChhhHHhhhcCC----CCCc
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTIS-KSITGKRFFLVLDDVWDGDY-----------MKWEPFYHCLKNG----LPES 320 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~~-----------~~w~~l~~~l~~~----~~gs 320 (973)
.. ..........+. ..-..++.+|+||++..... .....+...+... ..+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 011111222222 22235678999999943210 0122333333321 2344
Q ss_pred EEEEEcCChH-HHHH-h-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC-chHHHHHHHh
Q 002071 321 KILVTTRKES-VAFM-M-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG-LPLTTKAIGS 394 (973)
Q Consensus 321 ~iivTtr~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~ 394 (973)
.||.||.... +... . .....+.+...+.++..+++...+........ .+....|++.+.| .+-.|..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5565665432 1111 1 22346788889999999998877643221111 2345678888888 4555555543
No 197
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.77 E-value=0.00025 Score=78.98 Aligned_cols=315 Identities=12% Similarity=0.029 Sum_probs=165.5
Q ss_pred ceEEEEEEccCCCCC-CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-cccc
Q 002071 546 KVCHLMLSIHEGAPF-PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVK 623 (973)
Q Consensus 546 ~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~ 623 (973)
.+..+.+... ...+ ..++.+|++|+++.+..+- ..+....|.++..|+.+.+..+ +..+. ..+.
T Consensus 72 ~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l-------~~I~~~aF~~c~~L~~i~~p~~------l~~i~~~aF~ 137 (394)
T 4fs7_A 72 KVTEIKIPST-VREIGEFAFENCSKLEIINIPDSV-------KMIGRCTFSGCYALKSILLPLM------LKSIGVEAFK 137 (394)
T ss_dssp TEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTC-------CEECTTTTTTCTTCCCCCCCTT------CCEECTTTTT
T ss_pred CceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCc-------eEccchhhcccccchhhcccCc------eeeecceeee
Confidence 4555555322 2222 3467889999999886542 1223344778888887776642 22222 2334
Q ss_pred CCCCCcEEEecCCCcccc-chhhhccccccEEecCCCCCCcccC-ccccCCCCcceeecCCCCCCCccc-ccCCCccccc
Q 002071 624 RLVHLRYLNLSHQSIEKL-PETLCELYNLQKLDVSDCYGLKELP-QGIGKLVNMKHLLDDKTDSLGHMP-VGIGRLTSLR 700 (973)
Q Consensus 624 ~L~~L~~L~Ls~~~i~~L-p~~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~ 700 (973)
.+..+....... +..+ ...+.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..++ ..+..+..|+
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLE 211 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCC
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccc
Confidence 443333322222 2223 245778888888888654 34444 34567788888887665 22232 3356666676
Q ss_pred cCCeeeeCCCCCCCCCCccCcccccCCCccCceeeeccCCCCChhhhhhhhccCCCCCCcEEEEecCCCCCCCCCCcchH
Q 002071 701 TLVEFHVSGGGGVGGSNACRLESLKNLELLHVCGIRRLGNVTDVGEAKRLELDKMKYLSCLRLWFDKEEEDGGRRKEEDD 780 (973)
Q Consensus 701 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 780 (973)
.+.+...... .+.......+|+.+.+.. .+.. .-...+..+..|+.+.+..+...-
T Consensus 212 ~i~~~~~~~~------i~~~~~~~~~l~~i~ip~-----~~~~---i~~~~f~~~~~l~~~~~~~~~~~i---------- 267 (394)
T 4fs7_A 212 NMEFPNSLYY------LGDFALSKTGVKNIIIPD-----SFTE---LGKSVFYGCTDLESISIQNNKLRI---------- 267 (394)
T ss_dssp BCCCCTTCCE------ECTTTTTTCCCCEEEECT-----TCCE---ECSSTTTTCSSCCEEEECCTTCEE----------
T ss_pred eeecCCCceE------eehhhcccCCCceEEECC-----Ccee---cccccccccccceeEEcCCCccee----------
Confidence 6643221110 011111223333332111 0000 001134456777777775432110
Q ss_pred HHHHhhcCCCCCccEEEEeeecCCCCCCCccccccCccEEEEecCCCCCcCCC--CCCcCcccceeccccccceeeCccc
Q 002071 781 QQLLEALQPPLNLKELLIGLYRGNTVFPGWMMPLTNLRSLTLEKCEKCKQIPP--LGKLSSLEKLMIWGLKSVKRVANEF 858 (973)
Q Consensus 781 ~~~l~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~ 858 (973)
....+..+..++.+.+....+ ....+..+.+|+.+.+..+ ...++. +.++++|+.+.|.. +++.++...
T Consensus 268 --~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a 338 (394)
T 4fs7_A 268 --GGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRS 338 (394)
T ss_dssp --CSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred --eccccccccccceeccCceee---ccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHh
Confidence 011344556777766654321 1233557888999988765 233433 77888999888853 355555432
Q ss_pred ccccCCCCCcccEeecccccccccccccccCCCccCcccccceeeeccCccCCCCCCCCCCCCCcceE
Q 002071 859 LGIEIIAFPKLKSLTFYWMEEFEEWDYGITGMGSTSIMPCLSYLAIISCPKLKALPDHFHQMTTLKEL 926 (973)
Q Consensus 859 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~lp~~l~~l~~L~~L 926 (973)
. ..+.+|+.+.+.. ++..+.. .--..+++|+.++|... ++.+...+.++++|+.+
T Consensus 339 F----~~c~~L~~i~lp~--~l~~I~~-----~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 339 F----RGCTSLSNINFPL--SLRKIGA-----NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp T----TTCTTCCEECCCT--TCCEECT-----TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred c----cCCCCCCEEEECc--cccEehH-----HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 2 1456777776642 2333221 11124678999888653 55555567788888875
No 198
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.77 E-value=0.0012 Score=70.75 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=101.4
Q ss_pred CCceecchhHHHHHHHHhcCC---Cc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 182 EEEICGRVSEKNELISKLLCE---SS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
-.+++|.+..++.+.+.+..+ .. ......+-|.++|++|+|||+||+.+++... .. ..+.+..+.-..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh--
Confidence 356899998888887766311 00 0112346788999999999999999987320 11 223333332110
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCcc------C-h----hhHHhhhcC---CCCCcE
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYM------K-W----EPFYHCLKN---GLPESK 321 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~------~-w----~~l~~~l~~---~~~gs~ 321 (973)
...+ .....+...+...-..++.+|+||++...... . . ..+...+.. ...+..
T Consensus 85 ------------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 ------------KWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ------------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ------------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 0001 11111222222222467889999999653110 0 1 112222222 123445
Q ss_pred EEEEcCChH-HHHH--hCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCc-hHHHHHHHh
Q 002071 322 ILVTTRKES-VAFM--MGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGL-PLTTKAIGS 394 (973)
Q Consensus 322 iivTtr~~~-v~~~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~ 394 (973)
||.||.... +... -.....+.+...+.++..++|...+........ ......|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555665432 1111 122357788889999999999887643221111 23356788888886 445555544
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=2.8e-05 Score=80.27 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=50.3
Q ss_pred hhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCccccchhhhccc--cccEEecCCCCCCcccCc-----
Q 002071 595 EELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIEKLPETLCELY--NLQKLDVSDCYGLKELPQ----- 667 (973)
Q Consensus 595 ~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~~Lp~~i~~L~--~Lq~L~L~~~~~~~~lp~----- 667 (973)
..++.|+.|+|++|.++ .+..+|..+..+++|++|+|++|.|..+. .+..+. +|++|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~--~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCC--CCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCC--CCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 56777777777776663 23345556667777777777777777652 344444 777777777763333431
Q ss_pred --cccCCCCcceee
Q 002071 668 --GIGKLVNMKHLL 679 (973)
Q Consensus 668 --~i~~L~~L~~L~ 679 (973)
.+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 244566666664
No 200
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.74 E-value=0.001 Score=70.78 Aligned_cols=184 Identities=17% Similarity=0.133 Sum_probs=99.4
Q ss_pred CceecchhHHHHHHHHhcCCCc------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLLCESS------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (973)
.+++|.+..++.+.+.+..... ......+.+.|+|++|+||||+|+.+++. ... ..+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~---~~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSA---TFLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTC---EEEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEeeHHHHhh---
Confidence 5699999999998887632100 00123457899999999999999999873 221 223344332110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHH-HHHHhcCCcEEEEEecCCCCCccC-----------hhhHHhhhcC---C--CCC
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKT-ISKSITGKRFFLVLDDVWDGDYMK-----------WEPFYHCLKN---G--LPE 319 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdvw~~~~~~-----------w~~l~~~l~~---~--~~g 319 (973)
.. .......... +......++.+|+||++....... ...+...+.. . ..+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 0112222222 222234567899999996532110 0112222211 1 134
Q ss_pred cEEEEEcCChH-----HHHHhCCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHHH
Q 002071 320 SKILVTTRKES-----VAFMMGSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAIG 393 (973)
Q Consensus 320 s~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 393 (973)
..||.||.... +... ....+.+...+.++..+++...+........ .+....+++.+.|.+- ++..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 55666776532 2222 2346777778888888888776543221111 2345678888888775 444443
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=0.0002 Score=75.90 Aligned_cols=146 Identities=15% Similarity=0.014 Sum_probs=93.2
Q ss_pred hhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchh-hh-ccCceEEEEEeCc-cccHHHHHHHHHHHh
Q 002071 189 VSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDE-VN-RKFDKILWVCVSE-AFEEFRIARAIVEAL 265 (973)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~F~~~~wv~~s~-~~~~~~~~~~i~~~l 265 (973)
++.++.+...+.. +..+...++|++|.||||+|+.+.+... .. .+.+ ..++..+. ...++. .+++.+.+
T Consensus 3 ~~~~~~L~~~i~~------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~ 74 (305)
T 2gno_A 3 KDQLETLKRIIEK------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFL 74 (305)
T ss_dssp -CHHHHHHHHHHT------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHC------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHH
Confidence 4455666666632 2367899999999999999999976311 11 1333 34454332 222222 22333333
Q ss_pred cCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh-HHHHHhCCCCeeeCC
Q 002071 266 DVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE-SVAFMMGSTDIIPVQ 344 (973)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~l~ 344 (973)
...+ ..+++-++|+|+++.......+.+...+....+.+.+|++|.+. .+...+... .+++.
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2111 12567799999998877667778888887766778888777554 333333344 99999
Q ss_pred CCCHHHHHHHHHHHh
Q 002071 345 ELAEEECWLLFNRIA 359 (973)
Q Consensus 345 ~L~~~~~~~lf~~~~ 359 (973)
++++++..+.+.+.+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 202
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.60 E-value=3.2e-05 Score=72.25 Aligned_cols=111 Identities=8% Similarity=0.009 Sum_probs=63.4
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
-.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.++++.- ....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~----- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDM----- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHC-----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHh-----
Confidence 3578999888888887754221 123477999999999999999987321 2222322221 1111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCC-CCCcEEEEEcCC
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNG-LPESKILVTTRK 328 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~-~~gs~iivTtr~ 328 (973)
...+.+. .+.-.|+||++..........+...+..+ ..+.++|.||..
T Consensus 67 ----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 12347899999876655555566555543 345678887753
No 203
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.56 E-value=0.0049 Score=66.55 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=93.3
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
..++|.+..++.+...+..... .......+.++|++|+||||||+.+++. ....|. .+. ....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~---------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVL---------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHh----------
Confidence 4578888777776665532100 1123467899999999999999999873 221111 111 1100
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC------------------CCcEEE-
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL------------------PESKIL- 323 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~------------------~gs~ii- 323 (973)
....++.. +...+ .++-++++|++........+.+...+.... +...++
T Consensus 88 ----------~~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 88 ----------VKQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ----------CSHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ----------cCHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 01111111 11122 234577888886543323333333222111 011222
Q ss_pred EEcCChHHHHHhCC--CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchHHHH
Q 002071 324 VTTRKESVAFMMGS--TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPLTTK 390 (973)
Q Consensus 324 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 390 (973)
.|++...+...+.. ...+.+++.+.++-.+++.+.+.......+ .+.+..|++.+.|.|-.+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~----~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE----DAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHTSTTCHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHhcCCChHHHH
Confidence 34443332211111 235789999999999999887643222111 4567889999999996543
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.56 E-value=0.00031 Score=75.34 Aligned_cols=136 Identities=13% Similarity=0.220 Sum_probs=75.1
Q ss_pred ceecchhHHHHHHHHhcCCC---ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHH
Q 002071 184 EICGRVSEKNELISKLLCES---SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (973)
.++|.+..++.+...+.... .........+.++|.+|+||||+|+.+++. ....-...+.+.++....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-HHH
Confidence 47898888888887775421 001123468999999999999999999873 222222345566554332211 111
Q ss_pred HHHHhcCCCC--CCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcC
Q 002071 261 IVEALDVSSS--GLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTR 327 (973)
Q Consensus 261 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr 327 (973)
.++.... +......+...+. ....-+++||++..........+...+..+. ....+|.||.
T Consensus 95 ---l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 ---LIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp ---HHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred ---hcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1221110 1111111222221 2344699999998776656666666664331 2344777776
Q ss_pred C
Q 002071 328 K 328 (973)
Q Consensus 328 ~ 328 (973)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.53 E-value=0.0027 Score=71.44 Aligned_cols=189 Identities=12% Similarity=0.028 Sum_probs=99.6
Q ss_pred CCceecchhHHHHHHHHhcCC----C--ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 182 EEEICGRVSEKNELISKLLCE----S--SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
-.+++|.+..++.+.+.+..+ . .......+-|.|+|++|+|||+||+.+++. . ...-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH---
Confidence 356999999999888876311 0 001123467899999999999999999873 2 111233333221
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCc-------cChhhH----HhhhcC---CCCCcE
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDY-------MKWEPF----YHCLKN---GLPESK 321 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-------~~w~~l----~~~l~~---~~~gs~ 321 (973)
+. ....+. .......+.. ..-..++.+|+||++..... .....+ ...+.. ...+..
T Consensus 204 -l~----~~~~g~--~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LV----SKWLGE--SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HH----hhhcch--HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 10 111010 1112222222 22235678999999975311 111122 222211 134556
Q ss_pred EEEEcCChHH-HH-Hh-CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCc-hHHHHHHH
Q 002071 322 ILVTTRKESV-AF-MM-GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGL-PLTTKAIG 393 (973)
Q Consensus 322 iivTtr~~~v-~~-~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 393 (973)
||.||..... .. .. .....+.+...+.++..++|...+........ ......|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6767765421 11 11 22346778888888888898887643221111 23346688888884 44555444
No 206
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.53 E-value=0.00064 Score=77.15 Aligned_cols=145 Identities=15% Similarity=0.178 Sum_probs=79.2
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccC------c-eEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKF------D-KILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~-~~~wv~~s~~~~~~ 255 (973)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+++. +...+ + ..+.+.++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 359999999999999996532 234579999999999999999873 21111 1 12222222
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHHH-
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAFM- 334 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~- 334 (973)
....+ .-......+ +...-..++.+|++|. ..+....+...+..+ ..++|.+|........
T Consensus 246 -------~~~~g--~~e~~~~~~---~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRG--EFEDRLKKV---MDEIRQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHH
T ss_pred -------ccccc--hHHHHHHHH---HHHHHhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHh
Confidence 00000 001122222 2222235678899991 122223344434322 3566666665442211
Q ss_pred ------hCCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 335 ------MGSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 335 ------~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
..-..++.+.+.+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1112368999999999999998754
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.52 E-value=0.00028 Score=86.66 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=81.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhc---cC-c-eEEEEEeCccccHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNR---KF-D-KILWVCVSEAFEEFRI 257 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~-~~~wv~~s~~~~~~~~ 257 (973)
..++||+.+++++++.|.... ...+.++|.+|+||||+|+.+++...-.. .. + .++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 458999999999999996532 23468999999999999999987421100 01 1 234443322110
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHh-c-CCcEEEEEecCCCCC--------ccChhhHHhhhcCCCCCcEEEEEcC
Q 002071 258 ARAIVEALDVSSSGLGEFQSLLKTISKSI-T-GKRFFLVLDDVWDGD--------YMKWEPFYHCLKNGLPESKILVTTR 327 (973)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~--------~~~w~~l~~~l~~~~~gs~iivTtr 327 (973)
+. ....+.......+.+.+ . +++.+|+||++.... .+....+...+..+ +..+|.+|.
T Consensus 240 ---------g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred ---------cC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 00 00112222222222222 2 468999999996532 11122344444332 345666655
Q ss_pred ChHHHHH-----h-CCCCeeeCCCCCHHHHHHHHHHH
Q 002071 328 KESVAFM-----M-GSTDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 328 ~~~v~~~-----~-~~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
....... + .-...+.+.+++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 4432111 1 11246889999999999988654
No 208
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.49 E-value=0.00021 Score=74.66 Aligned_cols=133 Identities=13% Similarity=0.124 Sum_probs=68.0
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
..++|....+.++.+.+..... ....|.|+|.+|+|||++|+.+++.. ...-...+.++++... ...+...+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~~-~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN-ENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGSC-HHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCCC-hhHHHHHhc
Confidence 3588999998888876654221 22457899999999999999998742 1111234455555432 111111111
Q ss_pred HHhcCCCCCCCcH-HHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCC-----------CCCcEEEEEcCC
Q 002071 263 EALDVSSSGLGEF-QSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNG-----------LPESKILVTTRK 328 (973)
Q Consensus 263 ~~l~~~~~~~~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~-----------~~gs~iivTtr~ 328 (973)
+......... ......+. ....-+|+||++..........+...+..+ ....+||.||..
T Consensus 79 ---g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 79 ---GHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp ---CCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred ---CCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 1110000000 00000011 122458999999876554445555555432 134678888775
No 209
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.49 E-value=8.6e-05 Score=69.67 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=50.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
..++|+|..|+|||||++.+++..... .+ .++++...+-... ..+ .+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-----------------------------~~~-~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-----------------------------DAA-FEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-----------------------------GGG-GGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-----------------------------HHH-hCC
Confidence 478999999999999999998843221 11 2566655432211 112 245
Q ss_pred EEEEEecCCCCCccChhhHHhhhcCC-CCCc-EEEEEcCC
Q 002071 291 FFLVLDDVWDGDYMKWEPFYHCLKNG-LPES-KILVTTRK 328 (973)
Q Consensus 291 ~LlVlDdvw~~~~~~w~~l~~~l~~~-~~gs-~iivTtr~ 328 (973)
-+|||||+.......-+.+...+... ..|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68899999764332223344433221 1233 48888874
No 210
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.49 E-value=0.0022 Score=70.99 Aligned_cols=187 Identities=15% Similarity=0.085 Sum_probs=98.1
Q ss_pred CCceecchhHHHHHHHHhcCCCc------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 182 EEEICGRVSEKNELISKLLCESS------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
-.+++|.+..++.+.+.+..... ......+-|.|+|.+|+|||+||+.+++. ... ..+.++.+.-....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSKY 188 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhccc
Confidence 35799999999999887732100 00122467899999999999999999773 221 22333333221100
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCC-------ccCh----hhHHhhhcC----CCCCc
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGD-------YMKW----EPFYHCLKN----GLPES 320 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-------~~~w----~~l~~~l~~----~~~gs 320 (973)
.+ .....+...+...-.....+|+||+++... ...- ..+...+.. .....
T Consensus 189 --------------~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 189 --------------VG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred --------------cc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 00 011111122222223456799999996431 0011 122222221 12234
Q ss_pred EEEEEcCChH-HHHH-hC-CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH-HHHHH
Q 002071 321 KILVTTRKES-VAFM-MG-STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL-TTKAI 392 (973)
Q Consensus 321 ~iivTtr~~~-v~~~-~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 392 (973)
.||.||.... +... .. ....+.+...+.++..+++...+........ .+....|++.+.|..- +|..+
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 5565665432 1111 11 2346888999999999999887643322111 2345678888887543 55444
No 211
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=7e-05 Score=71.50 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=48.2
Q ss_pred cccEEEecccccccccccccCccccCCCCCcEEEecCCC-cccc-chhhhcc----ccccEEecCCCCCCcc-cCccccC
Q 002071 599 SLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQS-IEKL-PETLCEL----YNLQKLDVSDCYGLKE-LPQGIGK 671 (973)
Q Consensus 599 ~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~-i~~L-p~~i~~L----~~Lq~L~L~~~~~~~~-lp~~i~~ 671 (973)
.|+.||++++.+++..+ ..+..+++|++|+|++|. |+.- -..++.+ ++|++|+|++|..++. --..+..
T Consensus 62 ~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 46667777655444333 234567777777777775 5521 1234443 3577777777765543 1123556
Q ss_pred CCCcceeecCCCCCC
Q 002071 672 LVNMKHLLDDKTDSL 686 (973)
Q Consensus 672 L~~L~~L~l~~~~~~ 686 (973)
+++|++|++++|..+
T Consensus 138 ~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGV 152 (176)
T ss_dssp CTTCCEEEEESCTTC
T ss_pred CCCCCEEECCCCCCC
Confidence 777777777777543
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.0011 Score=70.58 Aligned_cols=180 Identities=14% Similarity=0.073 Sum_probs=96.9
Q ss_pred CceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.+++|.+..++++.+.+..... .+-...+.|.|+|++|+||||||+.+++. .... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 4689999888888877642100 00123457899999999999999999873 2221 22222 12
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCc----------cC----hhhHHhhhcC--CCCC
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDY----------MK----WEPFYHCLKN--GLPE 319 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----------~~----w~~l~~~l~~--~~~g 319 (973)
++.. ...+.. ... +...+.........+|+||++..... .. ...+...+.. ...+
T Consensus 84 ~l~~----~~~g~~--~~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLT----MWFGES--EAN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHH----HHHTTC--TTH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHh----hhcCch--HHH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 2222 211111 111 22223333345678999999963100 01 1333333332 1235
Q ss_pred cEEEEEcCChHH-HHH-hC---CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCchH
Q 002071 320 SKILVTTRKESV-AFM-MG---STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLPL 387 (973)
Q Consensus 320 s~iivTtr~~~v-~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 387 (973)
..||.||..... ... .. -...+.+...+.++-.+++......... .....+ ..+++.+.|.|-
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCH
Confidence 567777765432 111 22 2347889999999999998876643211 111122 345556666653
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.41 E-value=0.00075 Score=76.49 Aligned_cols=185 Identities=12% Similarity=0.087 Sum_probs=100.3
Q ss_pred CceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.+++|.+..++++.+.+..... -+....+-|.|+|.+|.|||++|+.+++. ... ..+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~---~fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA---FFFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSS---EEEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCC---CEEEEEchH-----
Confidence 4689999999999887743200 00123456899999999999999999873 222 223333221
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCc-----------cChhhHHhhhcC--CCCCcEE
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDY-----------MKWEPFYHCLKN--GLPESKI 322 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-----------~~w~~l~~~l~~--~~~gs~i 322 (973)
+...+. ..........+.....+++.+|+||++..... .....+...+.. ...+..|
T Consensus 274 -----l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -----IMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -----HHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -----hhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111100 11112223333344456778999999942110 111234444432 2234566
Q ss_pred EEEcCChH-HHHHh----CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCc-hHHHHHH
Q 002071 323 LVTTRKES-VAFMM----GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGL-PLTTKAI 392 (973)
Q Consensus 323 ivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 392 (973)
|.||.... +...+ .....+.+...+.++-.++|..++.... ......+ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-CcchhhH----HHHHHHccCCcHHHHHHH
Confidence 66666542 21111 1234688999999999999988764321 1111222 4466667664 4444433
No 214
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.37 E-value=0.00086 Score=75.92 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=58.9
Q ss_pred EEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEc----------C----ChHH-HHHhCCCCeeeCCCCCHHHHHHHHH
Q 002071 292 FLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTT----------R----KESV-AFMMGSTDIIPVQELAEEECWLLFN 356 (973)
Q Consensus 292 LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTt----------r----~~~v-~~~~~~~~~~~l~~L~~~~~~~lf~ 356 (973)
++++|++...+...++.+...+...... .+|+.| . ...+ .........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999887767777777777654444 344344 2 1111 1122333467999999999999998
Q ss_pred HHhccCCCcccchhHHHHHHHHHHhc-CCchHHHHH
Q 002071 357 RIAFFGRPIEECVKLEKIGRKIAGKC-RGLPLTTKA 391 (973)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c-~GlPLai~~ 391 (973)
+.+........ .+....|++.+ .|.|-.+..
T Consensus 377 ~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 377 IRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHH
Confidence 87632221111 33456677777 788864443
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.37 E-value=0.00013 Score=75.40 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=61.3
Q ss_pred cCCCCCcEEEecCCCcccc---chhhhccccccEEecCCCCCCcccCccccCCC--CcceeecCCCCCCCcccc------
Q 002071 623 KRLVHLRYLNLSHQSIEKL---PETLCELYNLQKLDVSDCYGLKELPQGIGKLV--NMKHLLDDKTDSLGHMPV------ 691 (973)
Q Consensus 623 ~~L~~L~~L~Ls~~~i~~L---p~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~------ 691 (973)
.++++|+.|+|++|.|+.+ |..+.++++|++|+|++|. +..+ ..+..+. +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4688999999999998855 4677899999999999998 6665 3355555 899999999976554441
Q ss_pred -cCCCccccccCCee
Q 002071 692 -GIGRLTSLRTLVEF 705 (973)
Q Consensus 692 -~i~~l~~L~~L~~~ 705 (973)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 25567777777643
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.34 E-value=0.0021 Score=68.63 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=84.9
Q ss_pred CceecchhHHHHHHHHhcCCCc--------cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc-
Q 002071 183 EEICGRVSEKNELISKLLCESS--------EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE- 253 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~- 253 (973)
..++|.+..++.+...+..... ........+.++|.+|+|||++|+.+.+. ... ..+.+.++.-.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 4589999999998887754100 00112456789999999999999999873 221 234444443211
Q ss_pred ------HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccC------------hhhHHhhhcC
Q 002071 254 ------EFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMK------------WEPFYHCLKN 315 (973)
Q Consensus 254 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~------------w~~l~~~l~~ 315 (973)
.....+.+...... .+.. .+...+|+||++....... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11112222211100 0000 1236799999997654333 3445544443
Q ss_pred C----------CCCcEEEEEcC----Ch-----HHHHHhCCCCeeeCCCCCHHHHHHHHHH
Q 002071 316 G----------LPESKILVTTR----KE-----SVAFMMGSTDIIPVQELAEEECWLLFNR 357 (973)
Q Consensus 316 ~----------~~gs~iivTtr----~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (973)
. ..+..+|.||. .. .+...+ ...+.+.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12445666642 11 122222 24689999999999888875
No 217
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.33 E-value=0.00026 Score=75.36 Aligned_cols=133 Identities=12% Similarity=0.137 Sum_probs=70.9
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++... +.. ...+.++++.-.. .++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~-~~~v~v~~~~~~~--~l~~--- 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSA-RSD-RPLVTLNCAALNE--SLLE--- 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSS-CSS-SCCCEEECSSCCH--HHHH---
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCc-ccC-CCeEEEeCCCCCh--HHHH---
Confidence 3589999999988887754321 233577999999999999999987321 111 1223455544322 1111
Q ss_pred HHhcCCCCCC-CcH-HHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcCCh
Q 002071 263 EALDVSSSGL-GEF-QSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTRKE 329 (973)
Q Consensus 263 ~~l~~~~~~~-~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr~~ 329 (973)
..+.+...+. ... ......+... ..-.|+||++..........+...+..+. ...+||.||...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred HHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 1222211100 000 0000011111 12468999998765544555665554431 346788877753
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.26 E-value=0.0013 Score=80.07 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=86.7
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh----ccCceEEEE-EeCccccHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN----RKFDKILWV-CVSEAFEEFRI 257 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv-~~s~~~~~~~~ 257 (973)
..++||+.+++++++.|... ...-+.|+|.+|+||||+|+.+++...-. ......+|. .++.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 46899999999999999653 23456899999999999999998732110 012333322 11110
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCCCc-----cChhhHHhhhcC--CCCCcEEEEEcCCh
Q 002071 258 ARAIVEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDGDY-----MKWEPFYHCLKN--GLPESKILVTTRKE 329 (973)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~-----~~w~~l~~~l~~--~~~gs~iivTtr~~ 329 (973)
+.. .......+.....+.+.+ +.+..+|+||++..... ..-......+.. ...+..+|.+|...
T Consensus 254 -------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 000 111123333333333333 34678999999975310 001111222221 12345667776654
Q ss_pred HHHHHhC-------CCCeeeCCCCCHHHHHHHHHHHh
Q 002071 330 SVAFMMG-------STDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 330 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
....... ....+.+...+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4322111 11368899999999988887654
No 219
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.16 E-value=0.0093 Score=66.11 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=64.5
Q ss_pred cccCCC-CceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCccc
Q 002071 563 STCRIK-RMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIEK 640 (973)
Q Consensus 563 ~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~~ 640 (973)
++..++ .|+++.+...- ..+-...|.++.+|+.+.+..+.- ..+..+. ..+..+..|+.+.+..+ ++.
T Consensus 58 aF~~~~~~L~sI~iP~sv-------t~Ig~~AF~~C~~L~~i~~~~n~p--~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTV-------TEIGSNAFYNCTSLKRVTIQDNKP--SCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp TTTTCCSCCCEEEECTTC-------CEECTTTTTTCTTCCEEEEGGGCC--CCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred hccCCCCcCEEEEECCCe-------eEEhHHHhhCCccCceEeecCCCC--CeeeEechhhchhcccceeeccCCc-cce
Confidence 345553 47888776532 222334578888888888876321 1233342 34566777777776543 555
Q ss_pred cc-hhhhccccccEEecCCCCCCcccC-ccccCCCCcceeecCCC
Q 002071 641 LP-ETLCELYNLQKLDVSDCYGLKELP-QGIGKLVNMKHLLDDKT 683 (973)
Q Consensus 641 Lp-~~i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~ 683 (973)
++ ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+
T Consensus 128 I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred ehhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 54 34677788888887643 33333 34556777777777544
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.16 E-value=0.0046 Score=63.97 Aligned_cols=184 Identities=13% Similarity=0.037 Sum_probs=91.9
Q ss_pred CCceecchhHHHHHHHHh---cCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 182 EEEICGRVSEKNELISKL---LCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
-.+++|.+..++++.+.+ ..... .+....+-+.|+|++|+||||||+.+++. .... .+.+..+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH--
Confidence 356899988777665543 22110 00112334889999999999999999873 2222 23333222100
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCcc---------C-----hhhHHhhhcC--CCCC
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYM---------K-----WEPFYHCLKN--GLPE 319 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~---------~-----w~~l~~~l~~--~~~g 319 (973)
... ......+...+.........++++|++...... . ...+...+.. ...+
T Consensus 84 ------------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 ------------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp ------------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred ------------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 000 011222223333333456789999998431110 0 1112222221 2334
Q ss_pred cEEEEEcCChH-HHHHh-C---CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCC-chHHHH
Q 002071 320 SKILVTTRKES-VAFMM-G---STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRG-LPLTTK 390 (973)
Q Consensus 320 s~iivTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~ 390 (973)
..||.||.... +...+ . -...+.+...+.++-.+++....... ....... ...+++.+.| .+--+.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCcccc----HHHHHHHcCCCCHHHHH
Confidence 56676776543 21111 1 13467788888888888887765321 1111111 2346677777 554333
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.14 E-value=0.00055 Score=83.07 Aligned_cols=156 Identities=13% Similarity=0.211 Sum_probs=90.6
Q ss_pred CceecchhHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
..++|.+..++.+.+.+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 4589999999888887764321 01223447999999999999999999873 22222345556655422110
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcCC
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTRK 328 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr~ 328 (973)
. .....+...++. ...-+|+||++..........+...+..+. ....||+||..
T Consensus 565 ----------~--~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------S--TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------C--CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------c--cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 001111111211 233489999998776666666776665431 34688888873
Q ss_pred h-----H----HHHHh-----CC-CCeeeCCCCCHHHHHHHHHHHh
Q 002071 329 E-----S----VAFMM-----GS-TDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 329 ~-----~----v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
. . +...+ .- ..++.+.+++.++-.+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1 11111 11 2478889999888877776643
No 222
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.012 Score=63.96 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=96.4
Q ss_pred CCceecchhHHHHHHHHhcCC----C---ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccH
Q 002071 182 EEEICGRVSEKNELISKLLCE----S---SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEE 254 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (973)
=.++.|-++.+++|.+.+.-+ + .-+-...+=|-++|++|.|||.||+++++. ..-. .+.|..++-.+
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~s- 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAELVQ- 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGGSC-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHhhc-
Confidence 356889988888777655321 0 001223566889999999999999999983 3222 23444332111
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHhcCCcEEEEEecCCCCCc--------cC------hhhHHhhhcC--CC
Q 002071 255 FRIARAIVEALDVSSSGLGEFQSLLKTIS-KSITGKRFFLVLDDVWDGDY--------MK------WEPFYHCLKN--GL 317 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~~--------~~------w~~l~~~l~~--~~ 317 (973)
.. ..+.+...+.+. ..-+..+.+|++|+++..-. .. ...+...+.. ..
T Consensus 221 -------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 -------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp -------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred -------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 00 011112222222 22245689999999964210 00 1112222222 23
Q ss_pred CCcEEEEEcCChHHH-H-Hh---CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 318 PESKILVTTRKESVA-F-MM---GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 318 ~gs~iivTtr~~~v~-~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
.+..||.||...+.. . .. .-...+.+..-+.++..++|..+.-.-. .....++ ..|++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCCH----HHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCCH----HHHHHHCCCCC
Confidence 445566677654321 1 11 2356888998899999999987653321 1112223 45677777754
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.01 E-value=0.004 Score=75.46 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=79.8
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchh---hhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDE---VNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+++... +.......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 359999999999999996532 23468999999999999999987310 000011111111111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHHHh----
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAFMM---- 335 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~~~---- 335 (973)
.....+ .-...... .+...-..++.+|++|.- .+....+...+.. ...++|.||.........
T Consensus 245 --g~~~~G--~~e~~l~~---~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --GTKYRG--EFEDRLKK---VMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccccc--hHHHHHHH---HHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 000000 00112222 223333467789999921 1222233333332 245677666654421111
Q ss_pred ---CCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 336 ---GSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 336 ---~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
.-...+.+...+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998654
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.01 Score=65.33 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=38.6
Q ss_pred cCCCceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 180 IDEEEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
+.-.++.|-++.+++|.+.+.-.-. -+-...+=|-++|++|.|||+||+.+++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3345789999888888776532100 01234566889999999999999999984
No 225
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.016 Score=64.03 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=96.3
Q ss_pred CCceecchhHHHHHHHHhcCCC---c----cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccH
Q 002071 182 EEEICGRVSEKNELISKLLCES---S----EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEE 254 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~---~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (973)
=.++.|-++.+++|.+.+.-+- . .+-...+=|-++|++|.|||+||+.+++. ..-. .+.|..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc-
Confidence 3568898888877766553210 0 01234577889999999999999999984 2222 23344332111
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCCcEEEEEecCCCCC------ccC--------hhhHHhhhcC--CC
Q 002071 255 FRIARAIVEALDVSSSGLGEFQSLLKTISK-SITGKRFFLVLDDVWDGD------YMK--------WEPFYHCLKN--GL 317 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~------~~~--------w~~l~~~l~~--~~ 317 (973)
.. ..+.......+.. .-...+.+|++|+++..- ... ...+...+.. ..
T Consensus 254 -------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 00 1111222222222 224678999999996421 000 1122222322 23
Q ss_pred CCcEEEEEcCChHHHH-H-hCC---CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 318 PESKILVTTRKESVAF-M-MGS---TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 318 ~gs~iivTtr~~~v~~-~-~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
.+..||.||....... . ... ...+.+..-+.++..++|..+...-.. ....++ ..+++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 4556777776554221 1 111 346788888888888888876543211 111223 45677777753
No 226
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.72 E-value=0.0012 Score=70.14 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=50.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
...+.|+|.+|+|||+||+.+++.... ..-..+++++++ ++...+....... ...... ..+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~------~l~~~l~~~~~~~-----~~~~~~----~~~~~- 214 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP------SFAIDVKNAISNG-----SVKEEI----DAVKN- 214 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH------HHHHHHHCCCC---------CCTT----HHHHT-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH------HHHHHHHHHhccc-----hHHHHH----HHhcC-
Confidence 467889999999999999999984220 222345556543 2333332222110 001111 11222
Q ss_pred cEEEEEecCCCCCccChh--hHHh-hhcCC-CCCcEEEEEcCC
Q 002071 290 RFFLVLDDVWDGDYMKWE--PFYH-CLKNG-LPESKILVTTRK 328 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~--~l~~-~l~~~-~~gs~iivTtr~ 328 (973)
.-+|||||+.......|. .+.. .+... ..+..+|+||..
T Consensus 215 ~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 215 VPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp SSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 238999999654333442 1322 33221 123468888874
No 227
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.71 E-value=0.00066 Score=71.00 Aligned_cols=157 Identities=14% Similarity=0.086 Sum_probs=79.1
Q ss_pred CceecchhHHHHHHHHhcCCCc-c-----CCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLLCESS-E-----HQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (973)
.+++|.+..++++.+.+..-.. . +....+-+.|+|++|+|||+||+.+++. ....|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHHH---
Confidence 5689998887777765531000 0 0011223779999999999999999873 222221 111111000
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCcc---------------ChhhHHhhhcCC---CC
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYM---------------KWEPFYHCLKNG---LP 318 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~---------------~w~~l~~~l~~~---~~ 318 (973)
...... ......+ +......+..+|+||++...... ....+...+... ..
T Consensus 83 -------~~~~~~--~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 -------MFVGLG--ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------SCSSSC--SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------hhcchH--HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 000000 1111111 11222345679999999543211 122233333211 12
Q ss_pred CcEEEEEcCChHHH--HHhC---CCCeeeCCCCCHHHHHHHHHHHh
Q 002071 319 ESKILVTTRKESVA--FMMG---STDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 319 gs~iivTtr~~~v~--~~~~---~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
...||.||...... .... -...+.+...+.++..+++...+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 24566676654321 1111 13467888888888888887665
No 228
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.70 E-value=0.00075 Score=70.59 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=45.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEe--CccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCV--SEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
-+++.|+|++|+||||||.++... .-..++|+++ .+..+. . ..+.++..+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 356789999999999999999873 1123567776 332110 0 1345566666666665
Q ss_pred CCcEEEEEecCCC
Q 002071 288 GKRFFLVLDDVWD 300 (973)
Q Consensus 288 ~kr~LlVlDdvw~ 300 (973)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 556 999999954
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.67 E-value=0.0077 Score=67.58 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=94.6
Q ss_pred CceecchhHHHHHHHHhc---CCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH
Q 002071 183 EEICGRVSEKNELISKLL---CESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR 256 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (973)
.+++|.+..++++.+.+. .... -+....+-|.|+|++|.||||||+.+++. .... .+.++.++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH--
Confidence 468999887766665432 1100 00111234789999999999999999873 2222 233443322110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCcc--------------ChhhHHhhhcC--CCCCc
Q 002071 257 IARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYM--------------KWEPFYHCLKN--GLPES 320 (973)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~--------------~w~~l~~~l~~--~~~gs 320 (973)
+ .+ .........+.....+...+|+||++...... ....+...+.. ...+.
T Consensus 89 --------~----~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F----VG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C----TT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H----hc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 00 01122223334444567899999999653110 11222222221 12455
Q ss_pred EEEEEcCChHHHH--HhCC---CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 321 KILVTTRKESVAF--MMGS---TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 321 ~iivTtr~~~v~~--~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
.||.||....... .... ...+.+...+.++-.+++..++.... ...... ...+++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6777776654321 1221 33778888888888888877654321 111111 234777888876
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.64 E-value=0.01 Score=68.35 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=78.7
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.+++|-+...+.+.+.+.-..-.......++.++|++|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 458888887777755443211001124568999999999999999999873 22222 2233333222221111111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCcc----ChhhHHhhhcCCC---------------CCcEEE
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYM----KWEPFYHCLKNGL---------------PESKIL 323 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----~w~~l~~~l~~~~---------------~gs~ii 323 (973)
...+. ..+.....+... ....-+++||++...... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11110 001111112222 223448889999764322 1233444432211 234566
Q ss_pred EEcCChH-----HHHHhCCCCeeeCCCCCHHHHHHHHHHHh
Q 002071 324 VTTRKES-----VAFMMGSTDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 324 vTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
.||.... ....+ ..+.+.+++.++-.+++.++.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 6666432 22222 468899999988888877654
No 231
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.039 Score=60.75 Aligned_cols=178 Identities=15% Similarity=0.111 Sum_probs=94.7
Q ss_pred CceecchhHHHHHHHHhcC----CC---ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLC----ES---SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.++.|-++.+++|.+.+.- ++ .-+-...+=|-++|++|.|||+||+.+++. ..-. .+.|..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhhc--
Confidence 4688988888888765421 10 001234667889999999999999999983 3222 23343332110
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHH-HHHhcCCcEEEEEecCCCCCc------cC--h------hhHHhhhcC--CCC
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTI-SKSITGKRFFLVLDDVWDGDY------MK--W------EPFYHCLKN--GLP 318 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdvw~~~~------~~--w------~~l~~~l~~--~~~ 318 (973)
.. ..+.+...+.+ ...-...+.+|++|++..... .. . ..+...+.. ...
T Consensus 282 ------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 ------------KY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------CS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------cc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 00 11112222222 222245689999999964210 00 0 112222222 123
Q ss_pred CcEEEEEcCChHH-HH-Hh---CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 319 ESKILVTTRKESV-AF-MM---GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 319 gs~iivTtr~~~v-~~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
+..||.||..... -. .. .-...+.+..-+.++..++|..+...- .....-++ ..|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~-~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM-SVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS-CBCSSCCH----HHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC-CCCCCCCH----HHHHHHCCCCC
Confidence 4456667654332 11 11 225678888889999999998766332 11111223 45677777753
No 232
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.62 E-value=0.004 Score=75.63 Aligned_cols=135 Identities=17% Similarity=0.225 Sum_probs=74.4
Q ss_pred CceecchhHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIAR 259 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (973)
..++|.+..++.+...+..... ........+.++|.+|+|||++|+.+.+. .. ...+.+++++..+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 3588999888888776653210 01223457999999999999999999873 21 2344555544322100
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEcC
Q 002071 260 AIVEALDVSSSGLGEFQSLLKTISKSI-TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTTR 327 (973)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTtr 327 (973)
+..+.+..++....++ ...+...+ +...-+|+||++.....+..+.+...+..+. ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0011111111111111 11122222 2446799999998776666666666665431 2345777776
Q ss_pred C
Q 002071 328 K 328 (973)
Q Consensus 328 ~ 328 (973)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.62 E-value=0.0083 Score=60.25 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=52.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcC-----------CC-CCCCcHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDV-----------SS-SGLGEFQS 277 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~~ 277 (973)
-.++.|+|.+|+||||||..+.. ..-..++|++....++...+.+ +.+..+. .. ....+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 45899999999999999999976 1234688888776555554433 3333221 11 11222233
Q ss_pred HHHHHHHHhcCCcEEEEEecCCC
Q 002071 278 LLKTISKSITGKRFFLVLDDVWD 300 (973)
Q Consensus 278 ~~~~l~~~l~~kr~LlVlDdvw~ 300 (973)
....++..++.+.-+||+|.+-.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44455555544577899998743
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.61 E-value=0.0046 Score=75.90 Aligned_cols=135 Identities=15% Similarity=0.237 Sum_probs=73.2
Q ss_pred ceecchhHHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHH
Q 002071 184 EICGRVSEKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARA 260 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (973)
.++|.+..++.+...+..... ..+.....+.|+|.+|+|||++|+.+.+. ....-...+.++++......
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~----- 631 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH----- 631 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-----
Confidence 579999988888887754211 01223468999999999999999999873 21111233445544322210
Q ss_pred HHHHhcCCCCC---CCcHHHHHHHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCC-----------CCcEEEEEc
Q 002071 261 IVEALDVSSSG---LGEFQSLLKTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGL-----------PESKILVTT 326 (973)
Q Consensus 261 i~~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~-----------~gs~iivTt 326 (973)
....+.+..++ ......+...++. ...-+|+||++..........+...+..+. .+..||+||
T Consensus 632 ~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 00111111110 0011112222222 234689999998776666666777665441 244577777
Q ss_pred CC
Q 002071 327 RK 328 (973)
Q Consensus 327 r~ 328 (973)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.56 E-value=0.0033 Score=67.87 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=85.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
..++|++..++.+...+... .-+.++|.+|+|||+||+.+.+. .... ...+.++......++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~-- 91 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGT-- 91 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEE--
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCc--
Confidence 35889999998888887542 25889999999999999999873 2222 233444333333322111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHhcC--CcEEEEEecCCCCCccChhhHHhhhcCC-----------CCCcEEEEEcCCh
Q 002071 263 EALDVSSSGLGEFQSLLKTISKSITG--KRFFLVLDDVWDGDYMKWEPFYHCLKNG-----------LPESKILVTTRKE 329 (973)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~w~~l~~~l~~~-----------~~gs~iivTtr~~ 329 (973)
..... ..... ..-.+ ..-++++|++..........+...+..+ .....|+.|+...
T Consensus 92 --~~~~~-~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 92 --MIYNQ-HKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EEEET-TTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --eeecC-CCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00000 00000 00001 1258999999876554445555544322 2234555555522
Q ss_pred H------H-HHHhCCCC-eeeCCCCCHHHHHHHHHHHhcc
Q 002071 330 S------V-AFMMGSTD-IIPVQELAEEECWLLFNRIAFF 361 (973)
Q Consensus 330 ~------v-~~~~~~~~-~~~l~~L~~~~~~~lf~~~~~~ 361 (973)
. + .....--. .+.+.+.+.++-.+++.+.+..
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1 1 11112222 5788999999999998887643
No 236
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.51 E-value=0.018 Score=63.85 Aligned_cols=111 Identities=11% Similarity=0.135 Sum_probs=71.5
Q ss_pred CccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccC-ccccCCCCCcEEEecCCCcc
Q 002071 561 PISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIP-TNVKRLVHLRYLNLSHQSIE 639 (973)
Q Consensus 561 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp-~~i~~L~~L~~L~Ls~~~i~ 639 (973)
..++.+|.+|+++.+..+.- ..+ ..+....|..+..|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +.
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p--~~l-~~Ig~~aF~~c~~L~~i~~~~------~~~~I~~~aF~~c~~L~~i~lp~~-~~ 149 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKP--SCV-KKIGRQAFMFCSELTDIPILD------SVTEIDSEAFHHCEELDTVTIPEG-VT 149 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCC--CCC-CEECTTTTTTCTTCCBCGGGT------TCSEECTTTTTTCTTCCEEECCTT-CC
T ss_pred HHHhhCCccCceEeecCCCC--Cee-eEechhhchhcccceeeccCC------ccceehhhhhhhhcccccccccce-ee
Confidence 44678899999999876421 011 222334477788888776654 233443 45678899999999754 45
Q ss_pred ccc-hhhhccccccEEecCCCCCCcccCccccCCCCcceeecCCC
Q 002071 640 KLP-ETLCELYNLQKLDVSDCYGLKELPQGIGKLVNMKHLLDDKT 683 (973)
Q Consensus 640 ~Lp-~~i~~L~~Lq~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 683 (973)
.++ ..+..+.+|+.+.+..+ +..+........+|..+.+...
T Consensus 150 ~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 150 SVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT
T ss_pred eecccceecccccccccccce--eeEeccccccccceeEEEECCc
Confidence 454 45778899999998764 5555543334456777777554
No 237
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.37 E-value=0.0033 Score=62.84 Aligned_cols=114 Identities=17% Similarity=-0.019 Sum_probs=64.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHh
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS--GLGEFQSLLKTISKSI 286 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 286 (973)
.-.++.|+|..|+||||++..+.+. ...+-..++.+....... ....|++.++.... ......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 3478999999999999999888773 333333444444332211 12234444443211 1123345555566555
Q ss_pred cCCcE-EEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH
Q 002071 287 TGKRF-FLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES 330 (973)
Q Consensus 287 ~~kr~-LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~ 330 (973)
.+.++ +||+|.+..-+.+..+.+ ..+.+ .|..||+|.+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 54545 999999965432222223 23333 3788999988543
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.36 E-value=0.02 Score=60.30 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999983
No 239
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.36 E-value=0.057 Score=58.33 Aligned_cols=157 Identities=8% Similarity=-0.057 Sum_probs=101.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-Hhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISK-SIT 287 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 287 (973)
-.++..++|..|.||++.|+.+.... ....|+....+.+.... ++.++.+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNT---------------------DWNAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTC---------------------CHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCC---------------------CHHHHHHHhcCcCCc
Confidence 35688999999999999999887632 12345332222222222 23333333322 234
Q ss_pred CCcEEEEEecCCC-CCccChhhHHhhhcCCCCCcEEEEEcCC-------hHHHHHhC-CCCeeeCCCCCHHHHHHHHHHH
Q 002071 288 GKRFFLVLDDVWD-GDYMKWEPFYHCLKNGLPESKILVTTRK-------ESVAFMMG-STDIIPVQELAEEECWLLFNRI 358 (973)
Q Consensus 288 ~kr~LlVlDdvw~-~~~~~w~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 358 (973)
+++-++|+|++.. .+...++.+...+..-.+++.+|++|.. ..+...+. ....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677889999976 5555677888888766667887777643 23444433 3568899999999999888877
Q ss_pred hccCCCcccchhHHHHHHHHHHhcCCchHHHHH
Q 002071 359 AFFGRPIEECVKLEKIGRKIAGKCRGLPLTTKA 391 (973)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 391 (973)
+-..+...+ .+....+++.++|.+.++..
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 644332222 45577899999998876654
No 240
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.015 Score=64.02 Aligned_cols=178 Identities=13% Similarity=0.113 Sum_probs=93.5
Q ss_pred CCceecchhHHHHHHHHhcC----CCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccH
Q 002071 182 EEEICGRVSEKNELISKLLC----ESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEE 254 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (973)
=.++.|-++.+++|.+.+.- ++- .+-...+=|-++|++|.|||+||+.+++. .... .+.+..+.-.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~-- 252 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLV-- 252 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGC--
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhh--
Confidence 35689999888888775432 110 02234677889999999999999999983 2222 2334333211
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCCcEEEEEecCCCC-------Ccc---Ch----hhHHhhhcC--CC
Q 002071 255 FRIARAIVEALDVSSSGLGEFQSLLKTISK-SITGKRFFLVLDDVWDG-------DYM---KW----EPFYHCLKN--GL 317 (973)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~-------~~~---~w----~~l~~~l~~--~~ 317 (973)
... ..+.+...+.+.. .-...+.+|++|+++.. ... .. ..+...+.. ..
T Consensus 253 ------------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 253 ------------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ------------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ------------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 001 1111222222222 11345789999998431 000 01 112222222 12
Q ss_pred CCcEEEEEcCChHHH-HHh-C---CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCc
Q 002071 318 PESKILVTTRKESVA-FMM-G---STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGL 385 (973)
Q Consensus 318 ~gs~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 385 (973)
.+..||.||...... ..+ . -...+.+..-+.++..++|..+.-.-. ....-++ ..|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDINW----QELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCCH----HHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCC
Confidence 344566677654422 111 1 134778888888888888876653221 1111122 4567777764
No 241
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.047 Score=59.47 Aligned_cols=177 Identities=18% Similarity=0.125 Sum_probs=93.1
Q ss_pred CceecchhHHHHHHHHhcCC---Cc----cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCE---SS----EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.++.|-++.+++|.+.+.-+ .. .+-...+=|-++|++|.|||.||+++++. ..-.| +.+..++-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhh---
Confidence 46888888888777655321 00 02234567999999999999999999984 32222 333332211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HhcCCcEEEEEecCCCCCc------c--C--h----hhHHhhhcC--CCC
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISK-SITGKRFFLVLDDVWDGDY------M--K--W----EPFYHCLKN--GLP 318 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~------~--~--w----~~l~~~l~~--~~~ 318 (973)
.. -..+.+.....+.. .-+..+.+|++|+++.... . . . ..+...+.. ...
T Consensus 254 -----------sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -----------QK--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -----------CS--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------hc--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 00 01112222222222 2235689999999864210 0 0 1 112222221 234
Q ss_pred CcEEEEEcCChHHHH-H-hCC---CCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCc
Q 002071 319 ESKILVTTRKESVAF-M-MGS---TDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGL 385 (973)
Q Consensus 319 gs~iivTtr~~~v~~-~-~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 385 (973)
+..||.||...+... . +.. ...+.+..-+.++..++|..+.-.- ......++ ..|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCCH----HHHHHhCCCC
Confidence 456667776554321 1 111 3467788888888888888765322 11122233 4566677664
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.05 E-value=0.016 Score=58.77 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=62.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC--------------------
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-------------------- 270 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------------- 270 (973)
.++.|+|.+|+|||||++.++.... ..-..++|+..... ...+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEES--RDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSC--HHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccC--HHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 5899999999999999999985322 22235667665442 333333322 3322100
Q ss_pred ---CCCcHHHHHHHHHHHhc---CCcEEEEEecCCCC---CccChhhHHhhhcCC--CCCcEEEEEcCCh
Q 002071 271 ---GLGEFQSLLKTISKSIT---GKRFFLVLDDVWDG---DYMKWEPFYHCLKNG--LPESKILVTTRKE 329 (973)
Q Consensus 271 ---~~~~~~~~~~~l~~~l~---~kr~LlVlDdvw~~---~~~~w~~l~~~l~~~--~~gs~iivTtr~~ 329 (973)
...+.+++...+.+.+. .+..+||+|..... +......+...+..- ..|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555554442 23349999998632 222233444444321 2577888888765
No 243
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.04 E-value=0.016 Score=62.36 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=55.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTIS 283 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (973)
.-.++.|+|.+|+||||||.+++... ...=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 45799999999999999999998742 2222357899887777654 4455544321 1234555555555
Q ss_pred HHhc-CCcEEEEEecCCC
Q 002071 284 KSIT-GKRFFLVLDDVWD 300 (973)
Q Consensus 284 ~~l~-~kr~LlVlDdvw~ 300 (973)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5543 4556899998843
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.92 E-value=0.035 Score=60.90 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+.++|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999987
No 245
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.88 E-value=0.027 Score=54.24 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.87 E-value=0.032 Score=60.14 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=40.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhc----cCceEEEEEeCccccHHHHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNR----KFDKILWVCVSEAFEEFRIARAIVEALD 266 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (973)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+.+ +++.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457999999999999999999876422211 235789999988777665543 344444
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.81 E-value=0.019 Score=58.52 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhc----cCceEEEEEeCccccHHHHHHHHHHHhcCCCC---------CCCcHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNR----KFDKILWVCVSEAFEEFRIARAIVEALDVSSS---------GLGEFQ 276 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 276 (973)
-.++.|+|.+|+|||||++.+........ .-..++|+.....+....+. .+++.++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999876321111 13578899887755544432 33444432210 011222
Q ss_pred H---HHHHHHHHhc-CCcEEEEEecCCC
Q 002071 277 S---LLKTISKSIT-GKRFFLVLDDVWD 300 (973)
Q Consensus 277 ~---~~~~l~~~l~-~kr~LlVlDdvw~ 300 (973)
+ ....+.+.+. .+.-+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2233444443 4667888998743
No 248
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.81 E-value=0.045 Score=65.16 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=94.9
Q ss_pred CceecchhHHHHHHHHhc----CCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLL----CESS---EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.++.|-++.+++|.+.+. .++- -+-...+-|.++|++|.|||+||+.+++. ...+ .+.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH-----
Confidence 457888887777766542 1110 02234567899999999999999999984 3322 23443321
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCc------cC-hh----hHHhhhcCC--CCCcEE
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDY------MK-WE----PFYHCLKNG--LPESKI 322 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~------~~-w~----~l~~~l~~~--~~gs~i 322 (973)
+ . ... .......+...+....+..+.+|+||+++.-.. .. -. .+...+... ..+..|
T Consensus 274 -l----~----sk~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -I----M----SKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -H----H----SSC-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -h----h----ccc-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 1 000 011112222333333456789999999964211 11 11 122222211 233445
Q ss_pred EEEcCChH-HHHHhC----CCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 323 LVTTRKES-VAFMMG----STDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 323 ivTtr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
|.||...+ +-..+. -...+.+..-+.++-.++|..+.... ......++ ..|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~-~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM-KLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS-EECTTCCH----HHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC-CCCcccCH----HHHHHhcCCCC
Confidence 55665443 211111 14478888889999899988765321 11112223 45777787764
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.79 E-value=0.015 Score=56.19 Aligned_cols=118 Identities=15% Similarity=0.072 Sum_probs=65.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc---cccHHHHHHHHHHHh---cCCC-CCCC-------cHH
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE---AFEEFRIARAIVEAL---DVSS-SGLG-------EFQ 276 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l---~~~~-~~~~-------~~~ 276 (973)
..|-|++-.|.||||+|--..- +.-++=-.+.++.+-+ ......++..+.-.+ +... .... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 3566777777999999977665 3334433455554432 233444443331000 0000 0011 112
Q ss_pred HHHHHHHHHhcCCc-EEEEEecCCCC---CccChhhHHhhhcCCCCCcEEEEEcCChH
Q 002071 277 SLLKTISKSITGKR-FFLVLDDVWDG---DYMKWEPFYHCLKNGLPESKILVTTRKES 330 (973)
Q Consensus 277 ~~~~~l~~~l~~kr-~LlVlDdvw~~---~~~~w~~l~~~l~~~~~gs~iivTtr~~~ 330 (973)
......++.+.+.+ =|||||++-.. .....+.+...+........||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 23334555565444 49999998321 23455677777777777889999999864
No 250
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.75 E-value=0.074 Score=55.23 Aligned_cols=126 Identities=14% Similarity=0.121 Sum_probs=66.6
Q ss_pred EEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHh-cCCcE
Q 002071 213 ISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSI-TGKRF 291 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~ 291 (973)
+.++|++|.||||||+.++.. ... ..+++..++-.+. ...........+.+.. .....
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999873 211 2344443221110 0001111112222221 34578
Q ss_pred EEEEecCCCCCc-------cC----hhhHHhhhcCCC--CCcEEEEEcCChHHHH-H-h---CCCCeeeCCCCCHHHHHH
Q 002071 292 FLVLDDVWDGDY-------MK----WEPFYHCLKNGL--PESKILVTTRKESVAF-M-M---GSTDIIPVQELAEEECWL 353 (973)
Q Consensus 292 LlVlDdvw~~~~-------~~----w~~l~~~l~~~~--~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~ 353 (973)
++++|++..... .. ...+...+..+. ...-++.+|....+.. . . .-...+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999964210 00 112222333322 2334555666554321 1 1 224577888889999899
Q ss_pred HHHHHh
Q 002071 354 LFNRIA 359 (973)
Q Consensus 354 lf~~~~ 359 (973)
+|....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988765
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.75 E-value=0.037 Score=57.58 Aligned_cols=84 Identities=10% Similarity=0.152 Sum_probs=54.5
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCC-----CCcHHHH-HHHHHHH
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSG-----LGEFQSL-LKTISKS 285 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~~~ 285 (973)
++-|.|.+|+||||||.+++........=..++||+..+.++.. .+++++..... ..+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999998887642211112468999988887764 36667654221 2244444 3333222
Q ss_pred --h-cCCcEEEEEecCCC
Q 002071 286 --I-TGKRFFLVLDDVWD 300 (973)
Q Consensus 286 --l-~~kr~LlVlDdvw~ 300 (973)
+ +++.-+||+|-+-.
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 3 46678999999854
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.67 E-value=0.022 Score=60.95 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=40.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhc---------cC-----ceEEEEEeCccccHHHHHHHHHHHhcC
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNR---------KF-----DKILWVCVSEAFEEFRIARAIVEALDV 267 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (973)
.-.++.|+|.+|+||||||.+++.+..... .. ..++|++....++.+.+.+ +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 457999999999999999998875321111 11 4789999888877766553 3455543
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.65 E-value=0.033 Score=60.25 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=55.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTISK 284 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 284 (973)
-.++.|.|.+|+||||||.++.... ...-..++|++....++.. .++.++.... ...+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3578889999999999999887642 2223478999988776654 2444443211 12345666666665
Q ss_pred Hhc-CCcEEEEEecCCC
Q 002071 285 SIT-GKRFFLVLDDVWD 300 (973)
Q Consensus 285 ~l~-~kr~LlVlDdvw~ 300 (973)
..+ ++--+||+|.+-.
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 554 3456899999843
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.57 E-value=0.03 Score=59.94 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=39.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhc----cCceEEEEEeCccccHHHHHHHHHHHhcC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNR----KFDKILWVCVSEAFEEFRIARAIVEALDV 267 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (973)
-.++.|+|.+|+||||||.+++....... .-..++|++....++.+.+. ++++.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 45899999999999999999876421111 12478999988877766654 34455543
No 255
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.56 E-value=0.096 Score=59.09 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=89.3
Q ss_pred CCceecchhHHHHHHHHh---cCCCcc---CCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 182 EEEICGRVSEKNELISKL---LCESSE---HQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
-.+++|.+..++++.+.. .....- +-.-.+-|.|+|.+|+||||||+.++.. .. ...+.++.++-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH--
Confidence 356899987766665543 221100 0001123899999999999999999873 22 2234444332110
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcC----CcEEEEEecCCCCCc----------cCh----hhHHhhhcCCC
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITG----KRFFLVLDDVWDGDY----------MKW----EPFYHCLKNGL 317 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdvw~~~~----------~~w----~~l~~~l~~~~ 317 (973)
. ........+...++. ...++++|++..... ..+ ..+...+..+.
T Consensus 103 ------------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0 001112233333332 347999999954211 111 12222233222
Q ss_pred --CCcEEEEEcCChHHHH-H-h---CCCCeeeCCCCCHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHhcCCch
Q 002071 318 --PESKILVTTRKESVAF-M-M---GSTDIIPVQELAEEECWLLFNRIAFFGRPIEECVKLEKIGRKIAGKCRGLP 386 (973)
Q Consensus 318 --~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 386 (973)
.+..|+.||....+.. . . .....+.+...+.++-.+++..++-.. ....... ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 2344555666554321 1 1 123477888888888888887665321 1111111 234666777655
No 256
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.46 E-value=0.12 Score=56.59 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=7.1
Q ss_pred HhhcccccEEEec
Q 002071 594 FEELTSLRAIEVS 606 (973)
Q Consensus 594 ~~~l~~Lr~L~L~ 606 (973)
|.++.+|+.+.|.
T Consensus 65 F~~C~~L~~I~lp 77 (379)
T 4h09_A 65 FNSCYNMTKVTVA 77 (379)
T ss_dssp TTTCTTCCEEEEC
T ss_pred hhCCCCCCEEEeC
Confidence 5555555555554
No 257
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.32 E-value=0.045 Score=66.25 Aligned_cols=157 Identities=10% Similarity=0.055 Sum_probs=83.3
Q ss_pred CceecchhHHHHHHHHhcCC----C---ccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH
Q 002071 183 EEICGRVSEKNELISKLLCE----S---SEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF 255 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (973)
.+++|.+..++++.+++... . .-.-.....|.|+|.+|+||||||+.+... ....| +.+..++
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 46899999888888876431 0 001123456899999999999999999873 22222 3333211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCcEEEEEecCCCCCcc-----------ChhhHHhhhcCC--CCCcEE
Q 002071 256 RIARAIVEALDVSSSGLGEFQSLLKTISKSITGKRFFLVLDDVWDGDYM-----------KWEPFYHCLKNG--LPESKI 322 (973)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-----------~w~~l~~~l~~~--~~gs~i 322 (973)
+..... ......+...+.........++++|++...... ....+...+... ..+..+
T Consensus 274 ---------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ---------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ---------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 100000 011111222233333345789999999532110 011222222221 234456
Q ss_pred EEEcCChH-HHHHhC----CCCeeeCCCCCHHHHHHHHHHHh
Q 002071 323 LVTTRKES-VAFMMG----STDIIPVQELAEEECWLLFNRIA 359 (973)
Q Consensus 323 ivTtr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~ 359 (973)
|.||.... +...+. -...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66665532 211111 12456788888899888888665
No 258
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.28 E-value=0.015 Score=56.52 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=54.2
Q ss_pred HHHHHhhcccccEEEeccc-ccccccccccCccccCCCCCcEEEecCCCcc-----ccchhhhccccccEEecCCCCCCc
Q 002071 590 LEELFEELTSLRAIEVSKL-FYTKSTILEIPTNVKRLVHLRYLNLSHQSIE-----KLPETLCELYNLQKLDVSDCYGLK 663 (973)
Q Consensus 590 ~~~~~~~l~~Lr~L~L~~~-~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~-----~Lp~~i~~L~~Lq~L~L~~~~~~~ 663 (973)
+..++..-+.|+.|+|+++ .+.......+-..+..-.+|+.|+|++|.|. .|-+.+..-..|++|+|++|. +.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CC
Confidence 4444556667777777764 5544334445555555667777777777765 334445555667777777766 32
Q ss_pred -----ccCccccCCCCcceeecCCC
Q 002071 664 -----ELPQGIGKLVNMKHLLDDKT 683 (973)
Q Consensus 664 -----~lp~~i~~L~~L~~L~l~~~ 683 (973)
.+-..+..-+.|++|+++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 13334444555677766643
No 259
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.25 E-value=0.055 Score=56.46 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=33.3
Q ss_pred CCCceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 181 DEEEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.-.+++|.+..++++.+....-.. +-..... +.|+|.+|+||||||+.++..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 345788988766665543321100 0001112 899999999999999999873
No 260
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.21 E-value=0.044 Score=59.02 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=54.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTIS 283 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (973)
.-.++.|+|.+|+||||||.++.... ...=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34589999999999999999987632 2223468899988776653 2444543211 1224555555555
Q ss_pred HHhc-CCcEEEEEecCCC
Q 002071 284 KSIT-GKRFFLVLDDVWD 300 (973)
Q Consensus 284 ~~l~-~kr~LlVlDdvw~ 300 (973)
...+ .+.-+||+|.+-.
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 4466999999843
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.12 E-value=0.021 Score=56.42 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=33.0
Q ss_pred chhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 188 RVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
|++.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566777888776542 23467999999999999999999876
No 262
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.07 E-value=0.046 Score=58.97 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=52.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTISK 284 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 284 (973)
-.++.|.|.+|+||||||.++.... ...-..++|++....++.. .++.++.... ...+.+++.+.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4589999999999999999887642 2222468999988777643 2444443211 11234455444444
Q ss_pred Hh-cCCcEEEEEecCC
Q 002071 285 SI-TGKRFFLVLDDVW 299 (973)
Q Consensus 285 ~l-~~kr~LlVlDdvw 299 (973)
.. +.+--+||+|.+-
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 33 2445589999884
No 263
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.05 E-value=0.0078 Score=58.48 Aligned_cols=117 Identities=9% Similarity=0.040 Sum_probs=78.9
Q ss_pred cCCCCceEEEeCCc-ccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCccccCCCCCcEEEecCCCcc----
Q 002071 565 CRIKRMRSLLIGGV-VFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVKRLVHLRYLNLSHQSIE---- 639 (973)
Q Consensus 565 ~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~~L~~L~~L~Ls~~~i~---- 639 (973)
.+-+.|++|.+.++ .+.... ...+.+.+..-+.|+.|+|++|.+++.....+...+..-..|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~g--a~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKER--IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHH--HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred hcCCCccEEECCCCCCCCHHH--HHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 44567888888764 431111 12244557778899999999988876555556666667788999999999987
Q ss_pred -ccchhhhccccccEEecCCCCC--Cc-----ccCccccCCCCcceeecCCC
Q 002071 640 -KLPETLCELYNLQKLDVSDCYG--LK-----ELPQGIGKLVNMKHLLDDKT 683 (973)
Q Consensus 640 -~Lp~~i~~L~~Lq~L~L~~~~~--~~-----~lp~~i~~L~~L~~L~l~~~ 683 (973)
.|-+.+..-..|++|+|++|.. +. .+...+..-+.|..|+++.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3444555566799999986531 22 23344556678888888765
No 264
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.04 E-value=0.021 Score=61.04 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh-ccCceEEEEEeCccccHHHHHHHHHHHhcC----
Q 002071 193 NELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN-RKFDKILWVCVSEAFEEFRIARAIVEALDV---- 267 (973)
Q Consensus 193 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~---- 267 (973)
-++++.+..-. .-..++|+|.+|+|||||++.+.+....+ ..++ ++++-+.+....-. ++.+.+..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~---~~~~~~~~~vV~ 232 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVT---EMQRLVKGEVVA 232 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHH---HHHTTCSSEEEE
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHH---HHHHHhCeEEEE
Confidence 35667776543 23489999999999999999987732111 1233 34566665543221 22233311
Q ss_pred CCCCCCcHHH-----HHHHHHHHh--cCCcEEEEEecCC
Q 002071 268 SSSGLGEFQS-----LLKTISKSI--TGKRFFLVLDDVW 299 (973)
Q Consensus 268 ~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdvw 299 (973)
...+...... ..-.+.+++ +++..||++||+-
T Consensus 233 atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 233 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 1111111111 111123333 5899999999993
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.02 E-value=0.15 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.94 E-value=0.06 Score=56.51 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=45.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc-cccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE-AFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSIT 287 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (973)
...+++++|.+|+||||++..+....... .=..+..+.... .....+.++...+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 34699999999999999999987632211 112345554432 1222333333333333322112233344444443 3
Q ss_pred CCcEEEEEecC
Q 002071 288 GKRFFLVLDDV 298 (973)
Q Consensus 288 ~kr~LlVlDdv 298 (973)
.+.=++++|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 33457888843
No 267
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.94 E-value=0.07 Score=56.27 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=27.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCc-eEEEEEeC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFD-KILWVCVS 249 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s 249 (973)
-.+++|+|.+|+|||||++.++..... .-. .++|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc
Confidence 358999999999999999998764222 212 46666543
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.79 E-value=0.085 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 269
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.79 E-value=0.083 Score=56.14 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=36.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEA 264 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (973)
.-.++.|.|.+|+||||||..++.+....+ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999876432222 567888765 4455666666554
No 270
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.66 E-value=0.084 Score=55.79 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=33.7
Q ss_pred eecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 185 ICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
++|.......+...+.... ......+|+|.|..|+||||||+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3555556666666665543 244678999999999999999998865
No 271
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.63 E-value=0.099 Score=56.36 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=52.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccC----ceEEEEEeCccccHHHHHHHHHHHhcCCC------------CCC
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKF----DKILWVCVSEAFEEFRIARAIVEALDVSS------------SGL 272 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------~~~ 272 (973)
.-.++.|+|.+|+|||||+..++......... ..++|++....+....+ ..+++..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999987632111111 24589987766543333 33444433211 001
Q ss_pred CcHHHHHHHHHHHhc------CCcEEEEEecCCC
Q 002071 273 GEFQSLLKTISKSIT------GKRFFLVLDDVWD 300 (973)
Q Consensus 273 ~~~~~~~~~l~~~l~------~kr~LlVlDdvw~ 300 (973)
....++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233344444443 4677889998743
No 272
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.62 E-value=0.17 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999864
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.59 E-value=0.22 Score=52.40 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=54.6
Q ss_pred hHHHHHHHHhcCCCc--cCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHH--HHHHHHHHHh
Q 002071 190 SEKNELISKLLCESS--EHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEF--RIARAIVEAL 265 (973)
Q Consensus 190 ~~~~~l~~~L~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l 265 (973)
.-.+++.+.|....+ -......+|.|+|.+|+||||++..++.. ....-..+.++... .+... +-++..++..
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHc
Confidence 344555555543211 01235689999999999999999999863 22222234555443 22221 2233344444
Q ss_pred cCCC---CCCCcHHHH-HHHHHHHhcCCcEEEEEecCC
Q 002071 266 DVSS---SGLGEFQSL-LKTISKSITGKRFFLVLDDVW 299 (973)
Q Consensus 266 ~~~~---~~~~~~~~~-~~~l~~~l~~kr~LlVlDdvw 299 (973)
+... ....+...+ ...+...+..+.-++++|-.-
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 3321 111222222 233444444445578888653
No 274
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.48 E-value=0.029 Score=55.65 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.++|.+.+... .....+|+|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555655432 23567999999999999999999876
No 275
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.38 E-value=0.11 Score=57.02 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=37.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhh----hccCceEEEEEeCccccHHHHHHHHHHHhcC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEV----NRKFDKILWVCVSEAFEEFRIARAIVEALDV 267 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (973)
-.++.|+|.+|+|||||+..++-.... .+.-..++|++....+....+ +.+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 458999999999999999976532111 112346889988776665543 335555553
No 276
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.34 E-value=0.11 Score=52.17 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=31.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhh---hc-cCceEEEEEeCccccH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEV---NR-KFDKILWVCVSEAFEE 254 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~~ 254 (973)
.-.+++|+|.+|+|||||++.++..... .. .-..++|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 3479999999999999999999752111 11 1345788876554443
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.33 E-value=0.17 Score=52.85 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=43.2
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhc-cCceEEEEEeCccccHHHHHHHHHHHh------cC-CCCCCCcHHHHH
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNR-KFDKILWVCVSEAFEEFRIARAIVEAL------DV-SSSGLGEFQSLL 279 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 279 (973)
....+|+|+|..|+||||||+.+.......+ ....+..|+...-+-.......+.... .. ..++..+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998876322111 122344445443332233333433221 11 113444556665
Q ss_pred HHHHHHhcC
Q 002071 280 KTISKSITG 288 (973)
Q Consensus 280 ~~l~~~l~~ 288 (973)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555555444
No 278
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.32 E-value=0.58 Score=51.05 Aligned_cols=120 Identities=8% Similarity=0.076 Sum_probs=60.4
Q ss_pred cceEEEEEEccCCCC-CCccccCCCCceEEEeCCcccCCCCCchhhHHHHHhhcccccEEEecccccccccccccCcccc
Q 002071 545 EKVCHLMLSIHEGAP-FPISTCRIKRMRSLLIGGVVFDHSSLDGNILEELFEELTSLRAIEVSKLFYTKSTILEIPTNVK 623 (973)
Q Consensus 545 ~~~r~lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~lp~~i~ 623 (973)
.+++.+.+... ... -..++..|.+|+++.+...- ..+....|.++ .|..+.+.. .+..++...-
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~v-------~~Ig~~aF~~c-~l~~i~~~~------~l~~I~~~aF 110 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVASTV-------TSIGDGAFADT-KLQSYTGME------RVKKFGDYVF 110 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTTC-------CEECTTTTTTC-CCCEEEECT------TCCEECTTTT
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCcc-------eEechhhhcCC-CCceEECCc------eeeEecccee
Confidence 34555555332 111 13467889999999986542 12233346665 466666653 2333433322
Q ss_pred CCCCCcEEEecCCCccccchh-hhccccccEEecCCCCCCcccC-ccccCCCCcceeecCCC
Q 002071 624 RLVHLRYLNLSHQSIEKLPET-LCELYNLQKLDVSDCYGLKELP-QGIGKLVNMKHLLDDKT 683 (973)
Q Consensus 624 ~L~~L~~L~Ls~~~i~~Lp~~-i~~L~~Lq~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~ 683 (973)
...+|+.+.+..+ +..+... +.+ .+|..+.+-.+ +..+. ..+..+.+|..+.+...
T Consensus 111 ~~~~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 111 QGTDLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp TTCCCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred ccCCcccccCCCc-ccccccccccc-ceeeeeeccce--eeccccchhcccccccccccccc
Confidence 3347888888654 3444332 332 24555544432 22222 23445566666655443
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.19 E-value=0.041 Score=57.62 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555544322 234568999999999999999999875
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.18 E-value=0.022 Score=54.68 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=18.7
Q ss_pred EEEEEEeCCCChHHHHHHHH
Q 002071 211 HIISIVGMGGIGKTALAQLA 230 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v 230 (973)
.+|+|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999998
No 281
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.16 E-value=0.15 Score=56.29 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=55.4
Q ss_pred HHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcC------
Q 002071 195 LISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDV------ 267 (973)
Q Consensus 195 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~------ 267 (973)
.++.|..-. .-..++|+|.+|+|||||++.+..+... .+-+.++++-+.+.. +..++..++...=..
T Consensus 141 ~ID~L~pi~-----kGq~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv 214 (473)
T 1sky_E 141 VVDLLAPYI-----KGGKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMV 214 (473)
T ss_dssp HHHHHSCEE-----TTCEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEE
T ss_pred HHHHHhhhc-----cCCEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEE
Confidence 456664432 1225899999999999999999875322 223556677776654 344555545432000
Q ss_pred --CCCCCCcHHH----HHHHHHHHh---cCCcEEEEEecCC
Q 002071 268 --SSSGLGEFQS----LLKTISKSI---TGKRFFLVLDDVW 299 (973)
Q Consensus 268 --~~~~~~~~~~----~~~~l~~~l---~~kr~LlVlDdvw 299 (973)
...+...... ..-.+.+++ ++++.|+++||+.
T Consensus 215 ~~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 215 FGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0111111111 011233333 5899999999993
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.12 E-value=0.027 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999976
No 283
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.08 E-value=0.01 Score=57.58 Aligned_cols=108 Identities=13% Similarity=-0.051 Sum_probs=51.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCC--CCCCcHHHHHHHHHHHhcC
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSS--SGLGEFQSLLKTISKSITG 288 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~ 288 (973)
.++.|+|..|+||||++..+....... .. .++++....+ .......+...++... ....+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 478899999999999996665532212 12 2333322211 0000000000011000 0001111 12233334
Q ss_pred CcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCCh
Q 002071 289 KRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 289 kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~ 329 (973)
+.-+|++|.+..-+. .|......+.+. |..|++|.++.
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 566999999976533 355444433332 67899987743
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.02 E-value=0.024 Score=54.55 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 285
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.99 E-value=0.15 Score=54.31 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=36.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHh
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEAL 265 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (973)
-.++.|.|.+|+||||+|..++.+... .=..++|++.. .+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 358999999999999999998875322 22356676653 45566666665543
No 286
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.91 E-value=0.027 Score=53.88 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=20.0
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999876
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.91 E-value=0.028 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 288
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.83 E-value=0.22 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 289
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.79 E-value=0.31 Score=52.22 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC--CCCcEEEEEcCChHHHHHh
Q 002071 279 LKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG--LPESKILVTTRKESVAFMM 335 (973)
Q Consensus 279 ~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~--~~gs~iivTtr~~~v~~~~ 335 (973)
.-.|.+.|-.++-+|++|.--.. +...-..+...+..- ..|..||++|-+..++..+
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~ 230 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI 230 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 34567777788889999987442 112223344444432 2477889999887776543
No 290
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.79 E-value=0.027 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 291
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.74 E-value=0.29 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...||.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888763
No 292
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.70 E-value=0.048 Score=55.99 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=29.9
Q ss_pred hHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 190 SEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 190 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...++++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555554332 234568999999999999999999876
No 293
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.65 E-value=0.37 Score=53.13 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCC----
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVS---- 268 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~---- 268 (973)
++++.|..-. .-..++|+|.+|+|||+|++++.++. .+.+-+.++++-+.+.. ...++.+++.+.=...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 5677776543 23478999999999999999998742 23344677888787654 4566777776542211
Q ss_pred ---------CCCCCcHH-----HHHHHHHHHh---cCCcEEEEEecC
Q 002071 269 ---------SSGLGEFQ-----SLLKTISKSI---TGKRFFLVLDDV 298 (973)
Q Consensus 269 ---------~~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDdv 298 (973)
..+..... ...-.+.+++ +++..||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11111111 1111233444 479999999998
No 294
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.60 E-value=0.058 Score=57.35 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=32.0
Q ss_pred ecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 186 CGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 186 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
|+.+.-.+++++.+...- ..+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 444555666666664322 123466799999999999999998876
No 295
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.55 E-value=0.41 Score=52.69 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=22.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988764
No 296
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.54 E-value=0.042 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|+|+.|+||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.46 E-value=0.045 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.44 E-value=0.03 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.43 E-value=0.032 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 300
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.38 E-value=0.26 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..++.++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998763
No 301
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.38 E-value=0.038 Score=53.35 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 302
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.37 E-value=0.27 Score=49.94 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=29.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA 251 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (973)
-.++.|.|.+|+||||||.+++... ...=..++|++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 3589999999999999998876532 122246788876553
No 303
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.36 E-value=0.041 Score=53.71 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999977
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.35 E-value=0.049 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999875
No 305
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.32 E-value=0.33 Score=52.02 Aligned_cols=125 Identities=12% Similarity=0.147 Sum_probs=65.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhh-hc--cC------------ceEEEEEeC----ccccH-----------------
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEV-NR--KF------------DKILWVCVS----EAFEE----------------- 254 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F------------~~~~wv~~s----~~~~~----------------- 254 (973)
.+++|+|+.|+|||||.+.++--... .+ .| ..+.+|.=. ...++
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 58999999999999999998642110 00 00 112333100 00111
Q ss_pred -HHHHHHHHHHhcCCC-----CCCCcH-HHHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC--CCCcEEEE
Q 002071 255 -FRIARAIVEALDVSS-----SGLGEF-QSLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG--LPESKILV 324 (973)
Q Consensus 255 -~~~~~~i~~~l~~~~-----~~~~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~--~~gs~iiv 324 (973)
.+-..++++.++... ...-+. +...-.|.+.|-.++-+|+||.--.. |...-..+...+..- ..|..||+
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 122344555555431 111222 23333466677777889999986432 111222344444321 13667888
Q ss_pred EcCChHHHHHh
Q 002071 325 TTRKESVAFMM 335 (973)
Q Consensus 325 Ttr~~~v~~~~ 335 (973)
+|-+...+..+
T Consensus 202 vTHd~~~a~~~ 212 (355)
T 1z47_A 202 VTHDQEEALEV 212 (355)
T ss_dssp ECSCHHHHHHH
T ss_pred ECCCHHHHHHh
Confidence 99887766543
No 306
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.29 E-value=0.05 Score=61.45 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=35.2
Q ss_pred ceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 184 EICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.++|.+..++.+...+... .-|.++|.+|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4889999998888877543 35889999999999999999873
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.29 E-value=0.042 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 308
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.25 E-value=0.044 Score=58.02 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=27.6
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeC
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVS 249 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 249 (973)
++.+||+|.|-|||||||.|-.+.-- ....=..+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 36799999999999999998877552 22222245556554
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.16 E-value=0.047 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999964
No 310
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.13 E-value=0.55 Score=51.92 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCc---cCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 191 EKNELISKLLCESS---EHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 191 ~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-.+++.+.|..... ......++|.++|.+|+||||++..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455565543211 01235789999999999999999888763
No 311
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.12 E-value=0.13 Score=46.49 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=31.8
Q ss_pred EEEeccccccccccc--ccCccccCCCCCcEEEecCCCccccch-hhhccccccEEecCCCC
Q 002071 602 AIEVSKLFYTKSTIL--EIPTNVKRLVHLRYLNLSHQSIEKLPE-TLCELYNLQKLDVSDCY 660 (973)
Q Consensus 602 ~L~L~~~~~~~~~~~--~lp~~i~~L~~L~~L~Ls~~~i~~Lp~-~i~~L~~Lq~L~L~~~~ 660 (973)
+++.++ ..+. .+|..+ -.+|++|+|++|.|+.+|. .+..+.+|++|+|++|.
T Consensus 12 ~v~Cs~-----~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-----RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-----SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-----CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555 3343 455433 2357777777777777764 35667777777777765
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.01 E-value=0.044 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.00 E-value=0.038 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.91 E-value=0.047 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.89 E-value=0.058 Score=53.13 Aligned_cols=25 Identities=40% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 316
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.87 E-value=0.059 Score=53.13 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
....+|+|.|++|+||||+|+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999875
No 317
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.86 E-value=0.066 Score=58.37 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=35.8
Q ss_pred ceecchhHHHHHHHHhcCC-------C--ccCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 184 EICGRVSEKNELISKLLCE-------S--SEHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.++|.+..++.+...+... . .........|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3789888888888777210 0 001123457899999999999999999873
No 318
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.84 E-value=0.27 Score=54.47 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=62.0
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHHHHHhcCC----
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAIVEALDVS---- 268 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~---- 268 (973)
++++.|..-. .-..++|+|.+|+|||+|++++.++. .+.+-+.++++-+.+.. ...++.+++...=...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 4567776543 23468999999999999999998742 23345788888887765 4566777766531111
Q ss_pred ----------CCCCCc-----HHHHHHHHHHHh---cCCcEEEEEecC
Q 002071 269 ----------SSGLGE-----FQSLLKTISKSI---TGKRFFLVLDDV 298 (973)
Q Consensus 269 ----------~~~~~~-----~~~~~~~l~~~l---~~kr~LlVlDdv 298 (973)
..+... .....-.+.+++ +++.+|+++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 011111 111222344555 368999999998
No 319
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.84 E-value=0.05 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.83 E-value=0.063 Score=53.14 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|+|.+|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999865
No 321
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.82 E-value=0.37 Score=50.46 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=46.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcc-ccHHHHHHHHHHHhcCC---CCCCCcHHHHHHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEA-FEEFRIARAIVEALDVS---SSGLGEFQSLLKTISKS 285 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 285 (973)
..++.++|.+|+||||++..++... ...-..+.++..... ....+.++...+..+.. .....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5799999999999999999887632 222234555554322 12223333444444432 11122333443333333
Q ss_pred hc-CCcEEEEEecCC
Q 002071 286 IT-GKRFFLVLDDVW 299 (973)
Q Consensus 286 l~-~kr~LlVlDdvw 299 (973)
++ +.-=++++|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 43 322377888753
No 322
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.79 E-value=0.31 Score=54.22 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=29.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE 253 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (973)
...+++|+|..|+|||||++.+... ... -.+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 4679999999999999999999863 222 23455554444443
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.78 E-value=0.05 Score=53.65 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 324
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.75 E-value=0.054 Score=55.57 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|.|+|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4799999999999999999876
No 325
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.75 E-value=0.42 Score=51.35 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=65.0
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchh------------hhc---cCceEEEEEeC----ccccH-----------------
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDE------------VNR---KFDKILWVCVS----EAFEE----------------- 254 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~------------~~~---~F~~~~wv~~s----~~~~~----------------- 254 (973)
.+++|+|+.|+|||||.+.++--.. +.. .-..+.+|.=. ...++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE 109 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 5899999999999999999865211 000 00113333100 00011
Q ss_pred -HHHHHHHHHHhcCCCC-----CCCcHH-HHHHHHHHHhcCCcEEEEEecCCCC-CccChhhHHhhhcCC--CCCcEEEE
Q 002071 255 -FRIARAIVEALDVSSS-----GLGEFQ-SLLKTISKSITGKRFFLVLDDVWDG-DYMKWEPFYHCLKNG--LPESKILV 324 (973)
Q Consensus 255 -~~~~~~i~~~l~~~~~-----~~~~~~-~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~w~~l~~~l~~~--~~gs~iiv 324 (973)
.+-..++++.++.... ..-+.. ...-.|.+.|-.++-+++||.--.. |...-..+...+..- ..|..||+
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (362)
T 2it1_A 110 IDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189 (362)
T ss_dssp HHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1223455666655321 112222 3333466777777889999986332 111122344444322 12667888
Q ss_pred EcCChHHHHHh
Q 002071 325 TTRKESVAFMM 335 (973)
Q Consensus 325 Ttr~~~v~~~~ 335 (973)
+|-+...+..+
T Consensus 190 vTHd~~~a~~~ 200 (362)
T 2it1_A 190 VTHDQAEALAM 200 (362)
T ss_dssp EESCHHHHHHH
T ss_pred ECCCHHHHHHh
Confidence 88887665443
No 326
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.73 E-value=0.062 Score=53.33 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.72 E-value=0.044 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 328
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.70 E-value=0.067 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.69 E-value=0.053 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|+|++|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.68 E-value=0.058 Score=52.69 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 331
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.67 E-value=0.059 Score=55.31 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
....+|+|.|..|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998866
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.67 E-value=0.055 Score=53.41 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999865
No 333
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.67 E-value=0.055 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999976
No 334
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.62 E-value=0.056 Score=51.44 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.60 E-value=0.37 Score=51.15 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+++|+|..|+||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998863
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.59 E-value=0.047 Score=52.39 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.56 E-value=0.061 Score=55.44 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 338
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.56 E-value=0.046 Score=54.00 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 339
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.55 E-value=0.067 Score=53.06 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.7
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+||.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999876
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.54 E-value=0.044 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999976
No 341
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.52 E-value=0.097 Score=53.72 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=32.2
Q ss_pred CCceecchhHHHHHHHHhcCCCc-------cCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 182 EEEICGRVSEKNELISKLLCESS-------EHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-.+++|.+..+.++.+....-.. +-..... +.|+|.+|+||||||+.++..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 35688887666555443321000 0001112 899999999999999999873
No 342
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.52 E-value=0.065 Score=52.99 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 343
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.51 E-value=0.058 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 344
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.44 E-value=0.86 Score=51.27 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=21.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...++|.|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999988763
No 345
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.43 E-value=0.059 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 346
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.43 E-value=0.036 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998865
No 347
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.42 E-value=0.37 Score=51.48 Aligned_cols=56 Identities=18% Similarity=0.029 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCce-EEEEEeCccc
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDK-ILWVCVSEAF 252 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~ 252 (973)
---++++.|..-. .-..++|+|.+|+|||+|++++.+.... .+-+. ++++-+.+..
T Consensus 161 tGiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 161 YSTRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDERP 217 (427)
T ss_dssp HHHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCCH
T ss_pred ccchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccCc
Confidence 3447788886543 2346899999999999999999874221 12232 3556666543
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.37 E-value=0.072 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 349
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.26 E-value=0.19 Score=49.08 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.6
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|+|.|..|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.25 E-value=0.064 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999875
No 351
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.23 E-value=0.53 Score=49.26 Aligned_cols=87 Identities=20% Similarity=0.140 Sum_probs=44.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc-HHHHHHHHHHHhcCCC---CCCCcHHHHHH-HHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE-EFRIARAIVEALDVSS---SGLGEFQSLLK-TISK 284 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~---~~~~~~~~~~~-~l~~ 284 (973)
..+++|+|.+|+||||++..++.. ....-..+.++...-... ....+....+..+... ....+..++.. .+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863 222223445554432111 1112233344443321 11223334432 3333
Q ss_pred HhcCCcEEEEEecC
Q 002071 285 SITGKRFFLVLDDV 298 (973)
Q Consensus 285 ~l~~kr~LlVlDdv 298 (973)
....+.=++|+|--
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 32234457788865
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.18 E-value=0.075 Score=51.76 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999876
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.16 E-value=0.065 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999998873
No 354
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.15 E-value=0.09 Score=49.32 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.-.+++|+|..|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999876
No 355
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.14 E-value=0.054 Score=52.44 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 356
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.13 E-value=0.069 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.13 E-value=0.073 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEEEeCCCChHHHHHHHHhcc
Q 002071 211 HIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999773
No 358
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.12 E-value=1.8 Score=58.52 Aligned_cols=139 Identities=13% Similarity=0.073 Sum_probs=74.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
+-|-++|++|.|||++|+.+.... ..+ ..+.++.+...+...+++.+-..+.......... ..-.-.+|+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 568899999999999997776531 122 3456777777777666655555443211000000 000014678
Q ss_pred EEEEEecCCCCCccC------hhhHHhhhcCCC-----C-------CcEEEEEcCChH------HH-HHhCCCCeeeCCC
Q 002071 291 FFLVLDDVWDGDYMK------WEPFYHCLKNGL-----P-------ESKILVTTRKES------VA-FMMGSTDIIPVQE 345 (973)
Q Consensus 291 ~LlVlDdvw~~~~~~------w~~l~~~l~~~~-----~-------gs~iivTtr~~~------v~-~~~~~~~~~~l~~ 345 (973)
.++.+||+.-...+. .+.++..+..++ . +..+|-++.... +. .......++.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 999999986554443 233444443221 1 123344443221 11 1112224677777
Q ss_pred CCHHHHHHHHHHHh
Q 002071 346 LAEEECWLLFNRIA 359 (973)
Q Consensus 346 L~~~~~~~lf~~~~ 359 (973)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777776553
No 359
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.12 E-value=0.054 Score=53.20 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999875
No 360
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.10 E-value=0.074 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|.|+|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.09 E-value=0.072 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 362
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.06 E-value=0.18 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.+.|.|.+|.||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999988774
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.98 E-value=0.074 Score=50.50 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 364
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.96 E-value=0.48 Score=50.15 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+|.|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998763
No 365
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.96 E-value=0.11 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999998764
No 366
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.95 E-value=0.085 Score=55.77 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999999999999999876
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.93 E-value=0.11 Score=52.86 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 368
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.91 E-value=0.078 Score=52.46 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.90 E-value=0.2 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 370
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.85 E-value=0.065 Score=51.19 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 371
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.83 E-value=0.06 Score=52.01 Aligned_cols=23 Identities=39% Similarity=0.333 Sum_probs=16.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 372
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.82 E-value=0.069 Score=57.84 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=32.5
Q ss_pred CceecchhHHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 183 EEICGRVSEKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886665544443221 123889999999999999999873
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.76 E-value=0.08 Score=51.62 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.7
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.75 E-value=0.093 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 375
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.69 E-value=0.076 Score=51.66 Aligned_cols=24 Identities=17% Similarity=0.531 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999875
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.56 E-value=0.1 Score=53.20 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998866
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.50 E-value=0.11 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999865
No 378
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.47 E-value=0.47 Score=53.24 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=34.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
-.++.|.|.+|+||||||..++.+.... .-..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 4589999999999999999988753221 123577777554 3345555543
No 379
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.46 E-value=0.11 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHh
Q 002071 209 GLHIISIVGMGGIGKTALAQLAC 231 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~ 231 (973)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999999986
No 380
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.45 E-value=0.084 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 381
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.43 E-value=0.092 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 382
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.35 E-value=0.22 Score=54.56 Aligned_cols=98 Identities=13% Similarity=0.223 Sum_probs=57.3
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCc----eEEEEEeCccc-cHHHHHHHHHHH--hc
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFD----KILWVCVSEAF-EEFRIARAIVEA--LD 266 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~i~~~--l~ 266 (973)
+.++.|..-.. + ..++|+|..|+|||+|+.++.+.... +-+ .++++-+.+.. .+.++.+++.+. +.
T Consensus 140 raID~l~pigr----G-Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~ 212 (465)
T 3vr4_D 140 SAIDHLNTLVR----G-QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID 212 (465)
T ss_dssp HHHHTTSCCBT----T-CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG
T ss_pred eEEeccccccc----C-CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc
Confidence 45666655431 2 24789999999999999999885332 223 56677666543 455666665443 11
Q ss_pred C-----CCCCCCcHHH-----HHHHHHHHh---cCCcEEEEEecC
Q 002071 267 V-----SSSGLGEFQS-----LLKTISKSI---TGKRFFLVLDDV 298 (973)
Q Consensus 267 ~-----~~~~~~~~~~-----~~~~l~~~l---~~kr~LlVlDdv 298 (973)
. ...+...... ..-.+.+++ +++..|+++||+
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0 1112221111 112245555 378999999999
No 383
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.33 E-value=0.73 Score=51.48 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=35.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEA 264 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (973)
-.++.|.|.+|+||||+|..++.+.... .=..++|++... +...+...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHH
Confidence 4589999999999999999988753221 123577776653 455666666543
No 384
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.30 E-value=0.094 Score=55.19 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+++|+|.+|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999976
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.28 E-value=0.099 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..+|+|.|..|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.27 E-value=0.098 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 387
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.26 E-value=0.4 Score=53.21 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=56.6
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHH-HHHhcchhhhccCce-EEEEEeCccc-cHHHHHHHHHHHhcC---
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALA-QLACNNDEVNRKFDK-ILWVCVSEAF-EEFRIARAIVEALDV--- 267 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~--- 267 (973)
+.++.|..-. .-..++|+|.+|+|||+|| ..+.+.. .-+. ++++-+.+.. .+.++.+.+...=..
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 4567776543 2346899999999999995 5777632 3453 4777777654 455666666542111
Q ss_pred ----CCCCCCcHHH-----HHHHHHHHh--cCCcEEEEEecC
Q 002071 268 ----SSSGLGEFQS-----LLKTISKSI--TGKRFFLVLDDV 298 (973)
Q Consensus 268 ----~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 298 (973)
...+...... ..-.+.+++ +++..||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1112221111 111234444 589999999998
No 388
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.22 E-value=0.085 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.22 E-value=0.087 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998764
No 390
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.22 E-value=0.12 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+|+|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998764
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.22 E-value=0.12 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999876
No 392
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.19 E-value=0.15 Score=51.56 Aligned_cols=33 Identities=18% Similarity=0.465 Sum_probs=24.9
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEE
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWV 246 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 246 (973)
.+++|+|+.|+|||||++.+.. ......+.+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G---l~~p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC---LDKPTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT---SSCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhc---CCCCCceEEEE
Confidence 5899999999999999999875 22233455555
No 393
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.08 E-value=0.22 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 394
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.03 E-value=0.41 Score=53.10 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=56.6
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHH-HHHhcchhhhccCc-eEEEEEeCccc-cHHHHHHHHHHHhcCC--
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALA-QLACNNDEVNRKFD-KILWVCVSEAF-EEFRIARAIVEALDVS-- 268 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-- 268 (973)
+.++.|..-. .-..++|+|.+|+|||+|| ..+.+.. +-+ .++++-+.+.. ...++.+.+...=...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 4567776543 2346899999999999995 5777632 345 34777777654 4555666655422111
Q ss_pred -----CCCCCcHHHH-----HHHHHHHh--cCCcEEEEEecC
Q 002071 269 -----SSGLGEFQSL-----LKTISKSI--TGKRFFLVLDDV 298 (973)
Q Consensus 269 -----~~~~~~~~~~-----~~~l~~~l--~~kr~LlVlDdv 298 (973)
..+....... .-.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1122111111 12234444 589999999998
No 395
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.96 E-value=0.09 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 396
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.96 E-value=0.11 Score=51.80 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 397
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.95 E-value=0.11 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 446999999999999999999876
No 398
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.94 E-value=0.33 Score=51.73 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=53.7
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTISKSITGKR 290 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 290 (973)
.+++|+|..|.|||||++.+..- + ..-...+.+.-......... + +.+..-.. ........+...|..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~~-~---~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKHH-K---NYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSSC-S---SEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeeccccccc-h---hEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 47999999999999999999763 1 11234555532211110000 0 00000000 11123345666777778
Q ss_pred EEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChH
Q 002071 291 FFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKES 330 (973)
Q Consensus 291 ~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~ 330 (973)
=+|++|.+-.. ..++.+ ..+..+ +.-+|+||-...
T Consensus 242 ~ilildE~~~~--e~~~~l-~~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFY-NVLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCST--HHHHHH-HHHHTT--CCCEEEEEECSS
T ss_pred CEEEEcCCChH--HHHHHH-HHHhcC--CCEEEEEEcccH
Confidence 88999998652 233333 223322 222566665444
No 399
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.85 E-value=0.56 Score=52.11 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=57.4
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHH-HHHhcchhh----hccCc-eEEEEEeCccc-cHHHHHHHHHHHhc
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALA-QLACNNDEV----NRKFD-KILWVCVSEAF-EEFRIARAIVEALD 266 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~ 266 (973)
+.++.|..-. .-..++|+|..|+|||+|| ..+.+.... .++-+ .++++-+.+.. .+.++.+.+...=.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 4567776543 2346899999999999995 566664221 02244 46777777654 45556666554211
Q ss_pred C-------CCCCCCcHHHH-----HHHHHHHh--cCCcEEEEEecC
Q 002071 267 V-------SSSGLGEFQSL-----LKTISKSI--TGKRFFLVLDDV 298 (973)
Q Consensus 267 ~-------~~~~~~~~~~~-----~~~l~~~l--~~kr~LlVlDdv 298 (973)
. ...+....... .-.+.+++ +++..||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 1 11122111111 11234444 589999999998
No 400
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.84 E-value=0.16 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999865
No 401
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.83 E-value=0.11 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 402
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.81 E-value=0.45 Score=46.39 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=30.2
Q ss_pred EEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHH
Q 002071 212 IISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIV 262 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (973)
.|+|=|..|+||||.++.+++. .+.....+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 3778899999999999999873 333333344444333333444444444
No 403
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.80 E-value=0.18 Score=57.90 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=58.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCC---------------CCCCCc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVS---------------SSGLGE 274 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~---------------~~~~~~ 274 (973)
-.++.|+|.+|+|||||++.++...... =..++++...+. ...+...+ ..++.. .+...+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 4689999999999999999998632211 123456654433 22332222 111111 111123
Q ss_pred HHHHHHH-HHHHhcCCcEEEEEecCCCCCcc-----ChhhHHhhhcC-CCCCcEEEEEcCCh
Q 002071 275 FQSLLKT-ISKSITGKRFFLVLDDVWDGDYM-----KWEPFYHCLKN-GLPESKILVTTRKE 329 (973)
Q Consensus 275 ~~~~~~~-l~~~l~~kr~LlVlDdvw~~~~~-----~w~~l~~~l~~-~~~gs~iivTtr~~ 329 (973)
.++.+.. +...+..+.-++|+|-+..-+.. ....+...+.. ...|..||+||.+.
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 3444443 44455667779999954322211 12223222221 12466777777653
No 404
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.79 E-value=0.24 Score=54.28 Aligned_cols=100 Identities=10% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhh--------ccCc-eEEEEEeCccc-cHHHHHHHHHH
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVN--------RKFD-KILWVCVSEAF-EEFRIARAIVE 263 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~ 263 (973)
+.++.|..-. .-..++|+|..|+|||+|+.++.+..... ++=+ .++++-+.+.. ...++.+++.+
T Consensus 136 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 4566665543 12357899999999999999998754331 1112 56677676544 45556665544
Q ss_pred H--hcC-----CCCCCCcHHH-----HHHHHHHHh---cCCcEEEEEecC
Q 002071 264 A--LDV-----SSSGLGEFQS-----LLKTISKSI---TGKRFFLVLDDV 298 (973)
Q Consensus 264 ~--l~~-----~~~~~~~~~~-----~~~~l~~~l---~~kr~LlVlDdv 298 (973)
. +.. ...+...... ..-.+.+++ +++..|+++||+
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2 110 1112222211 122344555 378999999999
No 405
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.78 E-value=0.07 Score=53.03 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 406
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.77 E-value=0.081 Score=50.35 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEEeCCCChHHHHHHHHhcc
Q 002071 211 HIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998763
No 407
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.75 E-value=0.12 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||++.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 408
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.75 E-value=0.81 Score=52.09 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=36.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHh
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEAL 265 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (973)
.-.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34688999999999999999987642221 123577887654 3556666665443
No 409
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.75 E-value=0.13 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+++|+|..|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999763
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.74 E-value=0.1 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 411
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.72 E-value=0.12 Score=51.55 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 412
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.72 E-value=0.092 Score=56.57 Aligned_cols=111 Identities=11% Similarity=0.142 Sum_probs=59.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHH-HHHHHHHHhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFR-IARAIVEALDVSSSGLGEFQSLLKTISKSITGK 289 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (973)
.+++|+|..|+|||||.+.+... +.......+ +++.++..... -...++.+... .... ......+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~-~~~~---~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESKKCLVNQREV-HRDT---LGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCSSSEEEEEEB-TTTB---SCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhccccceeeeee-cccc---CCHHHHHHHHhhhC
Confidence 49999999999999999988762 222222222 22222211000 00000000000 0011 22344678888888
Q ss_pred cEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcCChHHHH
Q 002071 290 RFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTRKESVAF 333 (973)
Q Consensus 290 r~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr~~~v~~ 333 (973)
.=+|++|.+-+ .+.++.+.... ..|.-||+||-..+.+.
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 88999999964 23344433332 23566888887766553
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.67 E-value=0.14 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999854
No 414
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.67 E-value=0.36 Score=49.02 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=31.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAI 261 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (973)
-.++.|.|.+|+||||+|.+++.+. ....-..++|++.... ...+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~--~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER--ARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC--HHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC--HHHHHHHH
Confidence 4589999999999999998875431 2223345667765543 44444443
No 415
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.65 E-value=0.22 Score=53.87 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 192 KNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..++.+.+... .....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23678999999999999999998865
No 416
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.63 E-value=0.17 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||++.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 417
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.63 E-value=0.12 Score=52.74 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=26.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeC
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVS 249 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 249 (973)
-.+++|+|++|+|||||++.+...-.. ..-...+|+...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 468999999999999999998742111 122345566543
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.55 E-value=0.1 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 419
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.52 E-value=0.12 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999875
No 420
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.51 E-value=0.26 Score=54.38 Aligned_cols=100 Identities=10% Similarity=0.094 Sum_probs=58.4
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhcc--CceEEEEEeCccc-cHHHHHHHHHHHhcCC--
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRK--FDKILWVCVSEAF-EEFRIARAIVEALDVS-- 268 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-- 268 (973)
+.++.|..-. .-..++|+|.+|+|||+|+.+++++....+. =+.++++-+.+.. ...++.+++...=...
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 4567776543 2235778999999999999999875433221 1356677666554 4556666665431111
Q ss_pred -----CCCCCcHHH-----HHHHHHHHh---cCCcEEEEEecC
Q 002071 269 -----SSGLGEFQS-----LLKTISKSI---TGKRFFLVLDDV 298 (973)
Q Consensus 269 -----~~~~~~~~~-----~~~~l~~~l---~~kr~LlVlDdv 298 (973)
..+...... ..-.+.+++ +++..|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111211111 112234444 479999999998
No 421
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.43 E-value=0.3 Score=43.96 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=43.7
Q ss_pred cEEEecCCCcc--ccchhhhccccccEEecCCCCCCcccCcc-ccCCCCcceeecCCCCC
Q 002071 629 RYLNLSHQSIE--KLPETLCELYNLQKLDVSDCYGLKELPQG-IGKLVNMKHLLDDKTDS 685 (973)
Q Consensus 629 ~~L~Ls~~~i~--~Lp~~i~~L~~Lq~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~ 685 (973)
..++.+++.++ .+|..+ -.+|++|+|++|. +..+|.. +..+++|+.|+|.+|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 47888888888 888653 3479999999998 8888765 56799999999998853
No 422
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.2 Score=48.61 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568899999999999999998764
No 423
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.37 E-value=0.29 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999874
No 424
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.34 E-value=0.2 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999976
No 425
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.32 E-value=0.11 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhcc
Q 002071 211 HIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.+++|+|..|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 426
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.30 E-value=0.17 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 207 QKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.....++.+.|.||+||||++..+..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 34578999999999999999999875
No 427
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.23 E-value=0.78 Score=51.29 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=41.7
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCcccc-HHHHHHHH
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFE-EFRIARAI 261 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 261 (973)
++++.|..-. .-..++|+|..|+|||+|++++.+. .+-+.++++-+.+..+ +.++.+++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 5677776543 2347899999999999999998763 2346788888876654 44555554
No 428
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.20 E-value=0.46 Score=61.95 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=55.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTIS 283 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (973)
..++|-|+|++|+||||||.++.... ...=..++|+++.+.++... ++.++..-. .....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45689999999999999999997742 22334678888888776655 444442211 1123345555555
Q ss_pred HHh-cCCcEEEEEecCC
Q 002071 284 KSI-TGKRFFLVLDDVW 299 (973)
Q Consensus 284 ~~l-~~kr~LlVlDdvw 299 (973)
... +.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 444 3567799999994
No 429
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.13 E-value=0.14 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.2
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|.|.|++|+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 430
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.09 E-value=0.21 Score=50.84 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.05 E-value=0.14 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.8
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
+|+|.|..|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 432
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.00 E-value=0.21 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 433
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.99 E-value=0.15 Score=53.97 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999876
No 434
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.99 E-value=0.15 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.1
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 435
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.97 E-value=0.11 Score=52.52 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=15.9
Q ss_pred EEEEEEeCCCChHHHHHHHHh
Q 002071 211 HIISIVGMGGIGKTALAQLAC 231 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~ 231 (973)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999987
No 436
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.95 E-value=0.42 Score=55.18 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=53.2
Q ss_pred EEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHh---
Q 002071 211 HIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSSGLGEFQSLLKTIS-KSI--- 286 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l--- 286 (973)
+++.|.|.+|.||||++..+..... .. ...+.+.+........+. +.++.. ......+..... .+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~--~~-g~~Vl~~ApT~~Aa~~L~----e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAE--SL-GLEVGLCAPTGKAARRLG----EVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH--HT-TCCEEEEESSHHHHHHHH----HHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--hc-CCeEEEecCcHHHHHHhH----hhhccc---HHHHHHHHcCCcchhhhhh
Confidence 5889999999999999998876322 11 234445544333333222 222211 011111100000 000
Q ss_pred --cCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcC
Q 002071 287 --TGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTR 327 (973)
Q Consensus 287 --~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr 327 (973)
..+--+||+|.+...+...+..+...++ .+.++|+.--
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0123489999997665444555555544 5667777643
No 437
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.87 E-value=0.15 Score=51.07 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 438
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.87 E-value=0.15 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 439
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.86 E-value=0.15 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 440
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.79 E-value=0.22 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 441
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.79 E-value=0.16 Score=52.24 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999875
No 442
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.78 E-value=0.13 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||++.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 443
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.78 E-value=0.15 Score=48.66 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..++++|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998763
No 444
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.76 E-value=0.24 Score=53.15 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+++|+|..|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999999873
No 445
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.72 E-value=0.2 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..-.|+|+|.+|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3568999999999999999998764
No 446
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.71 E-value=0.16 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 447
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.60 E-value=0.79 Score=51.47 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=41.4
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccc-cHHHHHHHH
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAF-EEFRIARAI 261 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i 261 (973)
++++.|..-. .-..++|+|..|+|||+|++++.+. .+-+.++++-+.+.. .+.+++.++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 5677776543 2347899999999999999999874 234678888777653 444455443
No 448
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.60 E-value=0.21 Score=47.08 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...|+|+|.+|+|||||.+.+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998763
No 449
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.59 E-value=0.17 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 450
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.55 E-value=0.81 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.4
Q ss_pred CCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 207 QKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45789999999999999999998875
No 451
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.51 E-value=0.24 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999875
No 452
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.50 E-value=1.4 Score=48.81 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=56.1
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHH-HHHhcchhhhccCc-eEEEEEeCccc-cHHHHHHHHHHHhcCC--
Q 002071 194 ELISKLLCESSEHQKGLHIISIVGMGGIGKTALA-QLACNNDEVNRKFD-KILWVCVSEAF-EEFRIARAIVEALDVS-- 268 (973)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-- 268 (973)
+.++.|..-. .-..++|+|..|+|||+|| ..+.|. .+-+ .++++-+.+.. .+.++.+.+.+.=...
T Consensus 151 kaID~l~Pig-----rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPIG-----RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeeccccccc-----cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 4566666543 2236889999999999996 566662 2334 35788887664 4556666654431111
Q ss_pred -----CCCCCcHHH-----HHHHHHHHh--cCCcEEEEEecC
Q 002071 269 -----SSGLGEFQS-----LLKTISKSI--TGKRFFLVLDDV 298 (973)
Q Consensus 269 -----~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 298 (973)
..+...... ..-.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 111111111 111233444 589999999999
No 453
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.50 E-value=1.1 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.44 E-value=0.18 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 455
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.41 E-value=0.17 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 456
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.41 E-value=0.17 Score=48.87 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998763
No 457
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.36 E-value=0.19 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999876
No 458
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.26 E-value=0.18 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 459
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.20 E-value=0.18 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999976
No 460
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.17 E-value=0.31 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|+.|+|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46899999999999999999876
No 461
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.13 E-value=0.28 Score=54.17 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=34.9
Q ss_pred CceecchhHHHHHHHHhcCC--------CccCCCCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 183 EEICGRVSEKNELISKLLCE--------SSEHQKGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..++|-+..++.+...+... ........+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35788888888876665321 000011345688999999999999999987
No 462
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.08 E-value=0.19 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.5
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.07 E-value=0.19 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 464
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.02 E-value=0.74 Score=60.04 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=57.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTIS 283 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (973)
.-.++.|+|.+|+||||||.+++.... ..-..++|++....++.. .++.++.... ...+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 346999999999999999999987432 223478899888777654 2555554321 2245566666665
Q ss_pred HHh-cCCcEEEEEecCCC
Q 002071 284 KSI-TGKRFFLVLDDVWD 300 (973)
Q Consensus 284 ~~l-~~kr~LlVlDdvw~ 300 (973)
... +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544 34566999999854
No 465
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.99 E-value=0.19 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 466
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.99 E-value=0.19 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHhc
Q 002071 211 HIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.+++|+|..|+|||||++.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999976
No 467
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.94 E-value=0.66 Score=45.82 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...|.|-|..|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 468
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.81 E-value=0.19 Score=55.58 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 469
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.81 E-value=0.21 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999876
No 470
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.81 E-value=0.25 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988764
No 471
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.73 E-value=0.22 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999876
No 472
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.65 E-value=0.24 Score=46.17 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcc
Q 002071 211 HIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 473
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.63 E-value=0.21 Score=48.83 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998764
No 474
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.57 E-value=0.62 Score=46.02 Aligned_cols=106 Identities=12% Similarity=0.164 Sum_probs=54.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC----------CCCcHHHHH
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS----------GLGEFQSLL 279 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~ 279 (973)
--.|.+.|.||+||||+|..+.... ....++ +..+.+...-+... ...+..+..... ...+.+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~- 80 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL- 80 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH-
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH-
Confidence 3458889999999999988887642 222333 44445543222221 112222221110 01222221
Q ss_pred HHHHHHhcCCcEEEEEecCCCC------CccChhhHHhhhcCCCCCcEEEEEcCCh
Q 002071 280 KTISKSITGKRFFLVLDDVWDG------DYMKWEPFYHCLKNGLPESKILVTTRKE 329 (973)
Q Consensus 280 ~~l~~~l~~kr~LlVlDdvw~~------~~~~w~~l~~~l~~~~~gs~iivTtr~~ 329 (973)
+..+.=++|+|+.-.. ....|..+...++ .|-.|+.|+..+
T Consensus 81 ------L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 ------LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp ------HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred ------HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 2224558999987432 1224566655443 355788887644
No 475
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.51 E-value=0.54 Score=52.20 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=48.2
Q ss_pred EEEEEEeCCCChHHHHH-HHHhcchhhhccCc-eEEEEEeCccc-cHHHHHHHHHHHhcC-------CCCCCCc-----H
Q 002071 211 HIISIVGMGGIGKTALA-QLACNNDEVNRKFD-KILWVCVSEAF-EEFRIARAIVEALDV-------SSSGLGE-----F 275 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~-----~ 275 (973)
..++|+|.+|+|||+|| ..+.+.. .-+ .++++-+.+.. ...++.+.+...=.. ...+... .
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 35789999999999995 5777742 244 35777777654 344555444332111 0111111 1
Q ss_pred HHHHHHHHHHh--cCCcEEEEEecC
Q 002071 276 QSLLKTISKSI--TGKRFFLVLDDV 298 (973)
Q Consensus 276 ~~~~~~l~~~l--~~kr~LlVlDdv 298 (973)
....-.+.+++ +++..||++||+
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11122233333 599999999998
No 476
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.37 E-value=1.5 Score=43.98 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEeCCCChHHHHHHHHhcch-hhhccC-ceEEEEEeCccccHHHHHHHHHHHhcCC
Q 002071 191 EKNELISKLLCESSEHQKGLHIISIVGMGGIGKTALAQLACNND-EVNRKF-DKILWVCVSEAFEEFRIARAIVEALDVS 268 (973)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (973)
..++++..+.. -+.+.|+|..|.||||+.....-+. ...+.. ...+.+..........+.+.+...++..
T Consensus 65 ~q~~~i~~i~~--------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 65 FESEILEAISQ--------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhc--------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 34555555532 2478999999999998766554321 111222 2233333343333344555555544322
Q ss_pred CC---------------CC-----CcHHHHHHHHHHHhcCCcEEEEEecCCC
Q 002071 269 SS---------------GL-----GEFQSLLKTISKSITGKRFFLVLDDVWD 300 (973)
Q Consensus 269 ~~---------------~~-----~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 300 (973)
.. .. ...+.+.+.+...+++- -+||+|.++.
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 137 PGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp TTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred cCceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 00 00 12345555555544443 4789999976
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.36 E-value=0.27 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.200 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999876
No 478
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.26 E-value=1.6 Score=48.55 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=34.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEA 264 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (973)
.-.++.|.|.+|+||||+|.+++.+...+ =..++|++... +..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 34689999999999999999988753322 23566765543 344455554443
No 479
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.25 E-value=1.3 Score=44.57 Aligned_cols=104 Identities=16% Similarity=0.107 Sum_probs=54.3
Q ss_pred EEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCC--------CCC-----CCcHHHHH
Q 002071 213 ISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVS--------SSG-----LGEFQSLL 279 (973)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~--------~~~-----~~~~~~~~ 279 (973)
+.|+|..|.|||.+|..+... . -..++++ +....-..++.+.+.+ ++.. ... ....+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~---~~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L---STPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S---CSCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c---CCCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 778999999999999887653 1 1234444 3322222333333332 2211 000 01123333
Q ss_pred HHHHHHhcCCcEEEEEecCCCCCccChhhHHhhhcCCCCCcEEEEEcC
Q 002071 280 KTISKSITGKRFFLVLDDVWDGDYMKWEPFYHCLKNGLPESKILVTTR 327 (973)
Q Consensus 280 ~~l~~~l~~kr~LlVlDdvw~~~~~~w~~l~~~l~~~~~gs~iivTtr 327 (973)
.... .+.++--+||+|.+.......+..+...++ ..-++.+|..
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3222 334445699999998765556666655543 2345555644
No 480
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.24 E-value=0.29 Score=47.15 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999763
No 481
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.13 E-value=0.18 Score=48.86 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcc
Q 002071 211 HIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..+.|+|++|.||||+|..+++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999888873
No 482
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.12 E-value=0.25 Score=50.97 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEeCCCChHHHHHHHHhc
Q 002071 212 IISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (973)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999986
No 483
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.11 E-value=0.24 Score=51.78 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 45899999999999999999876
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.10 E-value=0.23 Score=50.15 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.8
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 485
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.06 E-value=0.72 Score=45.75 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
....|.|.|..|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999874
No 486
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.00 E-value=0.45 Score=50.23 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=28.3
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCc
Q 002071 208 KGLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSE 250 (973)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 250 (973)
...++|+|+|-||+||||+|..+... ....=..++-|.+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 45789999999999999999888763 222222456666543
No 487
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.92 E-value=0.83 Score=58.80 Aligned_cols=86 Identities=20% Similarity=0.157 Sum_probs=56.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSS-----SGLGEFQSLLKTIS 283 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 283 (973)
.-.++.|.|.+|+||||||.+++.... ..-..++|++.....+.. +++.++... ....+.+++.+.++
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa--~~g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHH--HcCCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHH
Confidence 345899999999999999999987432 222367888877766543 155555321 12235566666665
Q ss_pred HHh-cCCcEEEEEecCCCC
Q 002071 284 KSI-TGKRFFLVLDDVWDG 301 (973)
Q Consensus 284 ~~l-~~kr~LlVlDdvw~~ 301 (973)
+.. +.+.-+||+|.+...
T Consensus 804 ~lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHccCCCEEEEechhhh
Confidence 544 245669999999653
No 488
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.86 E-value=0.26 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998875
No 489
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.86 E-value=0.14 Score=53.49 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=18.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 490
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.80 E-value=0.26 Score=46.09 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=19.6
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998764
No 491
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.75 E-value=0.86 Score=58.65 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=57.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEEeCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVCVSEAFEEFRIARAIVEALDVSSS-----GLGEFQSLLKTIS 283 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (973)
.-+++-|.|.+|+||||||.+++.... ..=..++|++....++.. .++.++.... ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 356899999999999999999877432 233578999988877754 2455554321 1234566666555
Q ss_pred HHh-cCCcEEEEEecCCC
Q 002071 284 KSI-TGKRFFLVLDDVWD 300 (973)
Q Consensus 284 ~~l-~~kr~LlVlDdvw~ 300 (973)
... +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 544 34566999999854
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.70 E-value=0.3 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...|+|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 493
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.62 E-value=0.82 Score=45.87 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=26.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcchhhhccCceEEEEE
Q 002071 210 LHIISIVGMGGIGKTALAQLACNNDEVNRKFDKILWVC 247 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 247 (973)
..+|.|.|..|+||||+++.+..... ..++..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999987422 23455344443
No 494
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.55 E-value=0.28 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHhcc
Q 002071 211 HIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999764
No 495
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.55 E-value=0.33 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhcc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
..--|.|+|.+|+|||||+..+.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998764
No 496
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.54 E-value=0.29 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHhc
Q 002071 209 GLHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
...+++|+|+.|+|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 478999999999999999999975
No 497
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.33 E-value=0.23 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999865
No 498
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.29 E-value=0.29 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHhc
Q 002071 210 LHIISIVGMGGIGKTALAQLACN 232 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (973)
-.+++|+|..|+|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999976
No 499
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.28 E-value=0.64 Score=46.35 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=18.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHhcc
Q 002071 210 LHIISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-..|.|-|+.|+||||+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 500
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.19 E-value=0.29 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.3
Q ss_pred EEEEEeCCCChHHHHHHHHhcc
Q 002071 212 IISIVGMGGIGKTALAQLACNN 233 (973)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (973)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988653
Done!