Query 002073
Match_columns 972
No_of_seqs 567 out of 3826
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 15:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2012 Ubiquitin activating e 100.0 3E-224 5E-229 1907.8 59.3 814 143-968 2-817 (1013)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 4E-185 9E-190 1701.2 77.1 808 155-967 1-810 (1008)
3 cd01491 Ube1_repeat1 Ubiquitin 100.0 2E-76 4.3E-81 644.9 27.3 285 160-544 1-285 (286)
4 cd01490 Ube1_repeat2 Ubiquitin 100.0 3.6E-75 7.8E-80 663.5 28.0 275 577-887 1-275 (435)
5 KOG2013 SMT3/SUMO-activating c 100.0 9.7E-58 2.1E-62 503.9 16.4 307 568-891 5-369 (603)
6 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.3E-56 2.8E-61 494.8 23.4 250 577-910 1-255 (312)
7 cd01493 APPBP1_RUB Ubiquitin a 100.0 3.6E-55 7.8E-60 502.0 25.3 368 159-540 1-420 (425)
8 KOG2014 SMT3/SUMO-activating c 100.0 1.1E-54 2.3E-59 459.8 22.9 314 153-541 6-322 (331)
9 KOG2016 NEDD8-activating compl 100.0 1.8E-53 3.9E-58 467.0 13.1 376 157-540 6-516 (523)
10 cd01484 E1-2_like Ubiquitin ac 100.0 1.6E-51 3.4E-56 439.0 21.6 176 577-759 1-176 (234)
11 cd01488 Uba3_RUB Ubiquitin act 100.0 2.5E-48 5.4E-53 424.9 19.0 226 577-910 1-236 (291)
12 KOG2015 NEDD8-activating compl 100.0 3.3E-46 7.2E-51 396.1 16.9 181 566-756 31-223 (422)
13 cd01492 Aos1_SUMO Ubiquitin ac 100.0 3.1E-38 6.7E-43 329.9 20.6 149 159-309 2-153 (197)
14 cd01485 E1-1_like Ubiquitin ac 100.0 2.1E-37 4.5E-42 324.0 20.1 149 160-310 1-157 (198)
15 TIGR02356 adenyl_thiF thiazole 100.0 2.3E-36 5E-41 317.2 14.3 176 557-741 1-179 (202)
16 PRK08223 hypothetical protein; 100.0 3.8E-36 8.3E-41 327.0 16.4 181 555-745 7-202 (287)
17 cd00757 ThiF_MoeB_HesA_family 100.0 2E-35 4.2E-40 315.8 16.4 164 557-729 1-166 (228)
18 PRK05690 molybdopterin biosynt 100.0 3.7E-35 8.1E-40 316.6 14.5 166 555-729 10-178 (245)
19 PRK07411 hypothetical protein; 100.0 5.5E-35 1.2E-39 334.7 14.3 178 555-741 16-197 (390)
20 PRK08328 hypothetical protein; 100.0 7.4E-35 1.6E-39 311.8 13.4 164 556-728 8-172 (231)
21 TIGR01408 Ube1 ubiquitin-activ 100.0 5.2E-33 1.1E-37 346.2 31.8 154 157-312 398-564 (1008)
22 PRK05597 molybdopterin biosynt 100.0 1.6E-34 3.6E-39 327.1 14.3 179 556-743 7-189 (355)
23 TIGR02355 moeB molybdopterin s 100.0 5.1E-34 1.1E-38 306.6 15.1 166 555-729 2-170 (240)
24 cd01492 Aos1_SUMO Ubiquitin ac 100.0 6.9E-34 1.5E-38 297.2 14.3 152 556-717 2-153 (197)
25 PRK07878 molybdopterin biosynt 100.0 1.2E-32 2.7E-37 315.8 23.0 155 153-309 15-175 (392)
26 cd01489 Uba2_SUMO Ubiquitin ac 100.0 6.1E-33 1.3E-37 306.9 18.5 277 180-532 1-284 (312)
27 PRK05600 thiamine biosynthesis 100.0 1.7E-33 3.7E-38 319.7 14.4 176 555-739 19-201 (370)
28 PRK07878 molybdopterin biosynt 100.0 2.8E-33 6.1E-38 321.1 15.4 176 556-740 21-204 (392)
29 cd01485 E1-1_like Ubiquitin ac 100.0 2.4E-33 5.1E-38 293.5 13.4 154 557-717 1-156 (198)
30 PRK12475 thiamine/molybdopteri 100.0 5.5E-33 1.2E-37 312.3 15.4 166 555-729 2-171 (338)
31 cd01491 Ube1_repeat1 Ubiquitin 100.0 5.1E-33 1.1E-37 304.1 13.2 182 557-754 1-184 (286)
32 PRK07688 thiamine/molybdopteri 100.0 1.2E-32 2.5E-37 309.8 15.0 166 555-729 2-171 (339)
33 cd01493 APPBP1_RUB Ubiquitin a 100.0 6.9E-32 1.5E-36 310.1 19.7 186 556-751 1-186 (425)
34 PRK08223 hypothetical protein; 100.0 2.7E-31 5.9E-36 289.1 18.3 153 157-311 6-164 (287)
35 TIGR02356 adenyl_thiF thiazole 100.0 2.3E-31 5E-36 279.4 15.6 149 160-310 1-155 (202)
36 PRK05690 molybdopterin biosynt 100.0 4E-31 8.6E-36 285.3 17.8 153 154-308 6-164 (245)
37 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 1.3E-31 2.9E-36 286.6 13.2 161 573-742 9-193 (244)
38 cd00757 ThiF_MoeB_HesA_family 100.0 5.3E-31 1.1E-35 281.7 17.2 149 160-310 1-155 (228)
39 PRK08762 molybdopterin biosynt 100.0 3.5E-31 7.6E-36 302.7 15.3 177 556-741 114-298 (376)
40 COG0476 ThiF Dinucleotide-util 100.0 3.4E-31 7.5E-36 287.4 14.3 167 555-730 8-177 (254)
41 PRK05597 molybdopterin biosynt 100.0 1.1E-30 2.4E-35 295.9 17.9 152 155-308 3-160 (355)
42 PRK07411 hypothetical protein; 100.0 2E-30 4.4E-35 297.1 19.0 155 153-309 11-171 (390)
43 PRK08328 hypothetical protein; 100.0 3.3E-30 7.2E-35 275.9 18.9 155 154-310 3-162 (231)
44 cd01488 Uba3_RUB Ubiquitin act 100.0 1.5E-29 3.3E-34 277.2 22.7 265 180-542 1-275 (291)
45 PRK14851 hypothetical protein; 100.0 1.3E-30 2.8E-35 314.3 14.8 167 554-730 22-190 (679)
46 TIGR02355 moeB molybdopterin s 100.0 3.6E-30 7.9E-35 276.9 16.2 147 159-307 3-155 (240)
47 PRK05600 thiamine biosynthesis 100.0 1E-29 2.2E-34 289.0 18.2 155 153-309 14-174 (370)
48 PRK14852 hypothetical protein; 100.0 4E-30 8.6E-35 313.4 15.0 165 554-728 311-477 (989)
49 KOG2017 Molybdopterin synthase 100.0 9.6E-31 2.1E-35 281.3 6.6 171 545-728 38-210 (427)
50 PRK15116 sulfur acceptor prote 100.0 1.9E-29 4.1E-34 273.7 14.7 165 555-727 10-175 (268)
51 PRK07688 thiamine/molybdopteri 100.0 3.3E-28 7E-33 273.9 18.3 151 158-310 2-160 (339)
52 cd01484 E1-2_like Ubiquitin ac 100.0 2.5E-27 5.3E-32 253.3 23.6 228 180-519 1-234 (234)
53 PRK12475 thiamine/molybdopteri 100.0 3.7E-28 7.9E-33 273.3 17.9 151 158-310 2-160 (338)
54 cd00755 YgdL_like Family of ac 100.0 2.6E-28 5.7E-33 260.4 14.0 155 565-727 1-156 (231)
55 PRK07877 hypothetical protein; 100.0 2.5E-28 5.4E-33 295.1 14.8 182 530-728 65-251 (722)
56 PRK08644 thiamine biosynthesis 100.0 3.9E-28 8.5E-33 256.6 14.1 156 555-720 8-164 (212)
57 COG0476 ThiF Dinucleotide-util 100.0 1.4E-27 3E-32 259.3 17.4 158 153-312 3-166 (254)
58 PF00899 ThiF: ThiF family; I 99.9 5.5E-28 1.2E-32 237.8 11.6 135 574-717 1-135 (135)
59 PRK15116 sulfur acceptor prote 99.9 3.1E-27 6.6E-32 256.5 16.7 142 155-298 7-153 (268)
60 PTZ00245 ubiquitin activating 99.9 1.4E-27 3.1E-32 250.8 13.3 122 155-279 3-124 (287)
61 cd01490 Ube1_repeat2 Ubiquitin 99.9 3.3E-26 7.2E-31 262.1 23.9 131 180-312 1-144 (435)
62 PRK08762 molybdopterin biosynt 99.9 8.2E-27 1.8E-31 266.8 18.5 154 154-309 109-268 (376)
63 KOG2013 SMT3/SUMO-activating c 99.9 3.6E-27 7.8E-32 262.1 12.3 361 171-538 5-418 (603)
64 PRK14852 hypothetical protein; 99.9 9.8E-27 2.1E-31 283.9 17.2 155 155-311 309-469 (989)
65 PRK14851 hypothetical protein; 99.9 1.5E-26 3.3E-31 279.1 17.8 157 153-311 18-180 (679)
66 TIGR01381 E1_like_apg7 E1-like 99.9 1.3E-26 2.8E-31 272.1 16.6 192 566-764 329-561 (664)
67 COG1179 Dinucleotide-utilizing 99.9 1.5E-26 3.2E-31 241.2 12.3 161 555-723 10-171 (263)
68 cd01483 E1_enzyme_family Super 99.9 2.6E-26 5.6E-31 227.9 13.0 133 577-718 1-133 (143)
69 KOG2015 NEDD8-activating compl 99.9 2.2E-25 4.7E-30 237.9 20.5 277 168-542 30-319 (422)
70 PF00899 ThiF: ThiF family; I 99.9 2.1E-25 4.5E-30 219.6 17.1 130 177-308 1-134 (135)
71 cd01486 Apg7 Apg7 is an E1-lik 99.9 1.3E-25 2.8E-30 244.6 15.5 183 577-766 1-224 (307)
72 TIGR03603 cyclo_dehy_ocin bact 99.9 2.5E-26 5.5E-31 256.2 9.5 149 556-728 53-207 (318)
73 PRK08644 thiamine biosynthesis 99.9 2.7E-25 5.9E-30 235.0 16.0 144 159-305 9-157 (212)
74 cd01483 E1_enzyme_family Super 99.9 3.5E-25 7.6E-30 219.8 15.5 129 180-310 1-133 (143)
75 cd00755 YgdL_like Family of ac 99.9 2.9E-25 6.3E-30 237.1 15.1 132 168-301 1-137 (231)
76 cd01487 E1_ThiF_like E1_ThiF_l 99.9 3.1E-25 6.8E-30 227.7 13.4 142 577-728 1-145 (174)
77 TIGR02354 thiF_fam2 thiamine b 99.9 2.1E-24 4.6E-29 226.2 14.7 156 560-727 6-167 (200)
78 KOG2017 Molybdopterin synthase 99.9 3.5E-25 7.6E-30 238.6 8.5 169 153-323 39-216 (427)
79 PTZ00245 ubiquitin activating 99.9 4.9E-24 1.1E-28 224.3 11.5 114 556-685 7-120 (287)
80 PRK07877 hypothetical protein; 99.9 2.3E-23 5.1E-28 252.1 16.4 149 153-307 82-235 (722)
81 COG1179 Dinucleotide-utilizing 99.9 3E-23 6.6E-28 216.5 13.0 142 155-298 7-153 (263)
82 PRK06153 hypothetical protein; 99.9 2.9E-23 6.3E-28 232.7 12.9 129 568-708 169-300 (393)
83 KOG2016 NEDD8-activating compl 99.9 9.4E-23 2E-27 225.6 12.7 188 554-751 6-193 (523)
84 TIGR02354 thiF_fam2 thiamine b 99.9 8.8E-22 1.9E-26 206.5 15.2 140 164-307 7-151 (200)
85 cd01487 E1_ThiF_like E1_ThiF_l 99.9 8.3E-22 1.8E-26 202.5 14.0 127 180-309 1-132 (174)
86 cd01486 Apg7 Apg7 is an E1-lik 99.9 9.4E-22 2E-26 214.6 15.1 130 180-312 1-153 (307)
87 KOG2014 SMT3/SUMO-activating c 99.9 6.4E-22 1.4E-26 211.0 11.7 154 556-719 12-165 (331)
88 KOG2336 Molybdopterin biosynth 99.9 1.5E-21 3.2E-26 204.9 11.5 169 555-729 59-240 (422)
89 TIGR01381 E1_like_apg7 E1-like 99.9 3.7E-21 8E-26 226.4 16.2 140 170-312 330-493 (664)
90 TIGR03603 cyclo_dehy_ocin bact 99.9 2.4E-21 5.1E-26 216.4 13.6 144 154-310 48-197 (318)
91 KOG2018 Predicted dinucleotide 99.8 2.6E-20 5.7E-25 198.5 10.6 157 556-720 55-212 (430)
92 PRK06153 hypothetical protein; 99.8 4.3E-19 9.4E-24 199.3 14.6 126 170-299 168-299 (393)
93 KOG2012 Ubiquitin activating e 99.8 1.2E-19 2.7E-24 212.6 8.1 151 159-311 411-574 (1013)
94 TIGR03736 PRTRC_ThiF PRTRC sys 99.8 4.6E-18 1E-22 182.6 13.1 129 176-308 9-151 (244)
95 KOG2018 Predicted dinucleotide 99.7 1.8E-17 3.8E-22 177.1 10.4 140 157-298 53-197 (430)
96 PF10585 UBA_e1_thiolCys: Ubiq 99.6 8E-16 1.7E-20 122.6 1.1 45 720-764 1-45 (45)
97 KOG2336 Molybdopterin biosynth 99.5 1.5E-14 3.2E-19 152.7 9.0 153 154-309 55-228 (422)
98 TIGR03693 ocin_ThiF_like putat 99.4 3.4E-13 7.4E-18 158.2 9.8 146 556-727 104-260 (637)
99 KOG2337 Ubiquitin activating E 99.4 1.3E-12 2.8E-17 147.8 8.6 191 569-766 334-567 (669)
100 PF02134 UBACT: Repeat in ubiq 99.1 2.3E-11 5E-16 105.8 1.1 51 861-916 1-51 (67)
101 KOG2337 Ubiquitin activating E 99.0 7.7E-10 1.7E-14 125.8 10.8 139 172-313 334-496 (669)
102 TIGR03693 ocin_ThiF_like putat 99.0 1.5E-09 3.3E-14 128.0 13.4 135 154-304 99-244 (637)
103 COG4015 Predicted dinucleotide 97.9 4.8E-05 1E-09 75.9 8.7 121 178-305 18-146 (217)
104 PRK06718 precorrin-2 dehydroge 97.5 0.0014 3.1E-08 69.4 13.9 98 175-301 7-104 (202)
105 TIGR03882 cyclo_dehyd_2 bacter 97.5 0.00012 2.6E-09 77.0 5.3 59 566-624 96-159 (193)
106 TIGR01470 cysG_Nterm siroheme 97.5 0.0022 4.8E-08 68.1 14.3 104 176-307 7-110 (205)
107 PF01488 Shikimate_DH: Shikima 97.1 0.0015 3.3E-08 64.6 7.8 78 174-274 8-85 (135)
108 PRK06719 precorrin-2 dehydroge 97.1 0.011 2.3E-07 60.4 13.8 86 175-289 10-95 (157)
109 PRK12549 shikimate 5-dehydroge 97.0 0.0016 3.5E-08 72.6 7.9 76 573-682 125-200 (284)
110 PRK12549 shikimate 5-dehydroge 97.0 0.0026 5.7E-08 70.9 9.2 76 176-272 125-200 (284)
111 PF01488 Shikimate_DH: Shikima 97.0 0.002 4.3E-08 63.8 7.2 79 571-685 8-86 (135)
112 PRK05562 precorrin-2 dehydroge 96.9 0.015 3.3E-07 62.5 13.6 100 175-302 22-121 (223)
113 COG1748 LYS9 Saccharopine dehy 96.9 0.0026 5.6E-08 73.4 8.2 101 576-709 2-102 (389)
114 COG1748 LYS9 Saccharopine dehy 96.8 0.0049 1.1E-07 71.2 10.2 98 179-303 2-104 (389)
115 PF13241 NAD_binding_7: Putati 96.8 0.0024 5.1E-08 60.3 6.1 90 175-299 4-93 (103)
116 PRK06718 precorrin-2 dehydroge 96.7 0.0093 2E-07 63.3 9.9 91 572-702 7-97 (202)
117 COG4015 Predicted dinucleotide 96.5 0.0088 1.9E-07 60.2 8.1 126 575-713 18-146 (217)
118 TIGR01470 cysG_Nterm siroheme 96.2 0.019 4.2E-07 61.0 8.9 95 573-706 7-101 (205)
119 PF13241 NAD_binding_7: Putati 96.2 0.0092 2E-07 56.3 5.7 88 572-705 4-91 (103)
120 PRK06719 precorrin-2 dehydroge 96.1 0.033 7.2E-07 56.7 9.9 85 572-698 10-94 (157)
121 PF03435 Saccharop_dh: Sacchar 95.9 0.014 3.1E-07 67.6 6.8 97 578-705 1-97 (386)
122 PRK10637 cysG siroheme synthas 95.9 0.11 2.3E-06 62.0 14.3 104 175-306 9-112 (457)
123 COG1648 CysG Siroheme synthase 95.7 0.075 1.6E-06 56.8 10.6 100 175-302 9-108 (210)
124 PRK14027 quinate/shikimate deh 95.5 0.039 8.5E-07 61.6 7.9 78 176-272 125-202 (283)
125 PRK14027 quinate/shikimate deh 95.1 0.045 9.8E-07 61.1 7.1 78 573-682 125-202 (283)
126 PRK07819 3-hydroxybutyryl-CoA 95.1 0.033 7.1E-07 62.2 5.9 171 576-770 6-185 (286)
127 PRK05562 precorrin-2 dehydroge 95.0 0.085 1.8E-06 56.8 8.5 96 572-706 22-117 (223)
128 PRK14106 murD UDP-N-acetylmura 94.9 0.088 1.9E-06 62.2 9.3 96 175-296 2-97 (450)
129 TIGR01809 Shik-DH-AROM shikima 94.9 0.053 1.1E-06 60.5 6.9 77 573-683 123-199 (282)
130 TIGR01809 Shik-DH-AROM shikima 94.9 0.06 1.3E-06 60.0 7.3 75 176-273 123-199 (282)
131 PF00056 Ldh_1_N: lactate/mala 94.9 0.09 2E-06 52.6 7.8 73 180-273 2-78 (141)
132 PF03446 NAD_binding_2: NAD bi 94.9 0.055 1.2E-06 55.2 6.4 111 179-302 2-123 (163)
133 PRK12548 shikimate 5-dehydroge 94.8 0.072 1.6E-06 59.6 7.5 84 573-682 124-207 (289)
134 PF05237 MoeZ_MoeB: MoeZ/MoeB 94.6 0.026 5.7E-07 51.4 2.8 41 500-540 23-64 (84)
135 PRK05808 3-hydroxybutyryl-CoA 94.6 0.16 3.6E-06 56.3 9.7 32 576-613 4-35 (282)
136 PRK00258 aroE shikimate 5-dehy 94.4 0.091 2E-06 58.4 7.3 36 572-612 120-155 (278)
137 PRK00258 aroE shikimate 5-dehy 94.4 0.12 2.6E-06 57.5 8.2 75 175-273 120-194 (278)
138 COG0373 HemA Glutamyl-tRNA red 94.4 0.06 1.3E-06 62.7 5.9 76 176-277 176-251 (414)
139 cd05291 HicDH_like L-2-hydroxy 94.4 0.12 2.6E-06 58.3 8.2 72 179-273 1-77 (306)
140 COG0169 AroE Shikimate 5-dehyd 94.3 0.13 2.8E-06 57.5 7.9 74 177-272 125-198 (283)
141 TIGR03882 cyclo_dehyd_2 bacter 94.2 0.16 3.5E-06 53.6 8.2 87 164-306 91-178 (193)
142 COG0373 HemA Glutamyl-tRNA red 94.2 0.066 1.4E-06 62.4 5.7 77 571-686 174-250 (414)
143 PRK12548 shikimate 5-dehydroge 94.1 0.19 4.2E-06 56.2 9.1 59 176-250 124-182 (289)
144 PRK14106 murD UDP-N-acetylmura 94.1 0.11 2.5E-06 61.2 7.7 36 573-614 3-38 (450)
145 PF00070 Pyr_redox: Pyridine n 94.0 0.062 1.3E-06 48.0 4.0 54 577-647 1-54 (80)
146 cd01065 NAD_bind_Shikimate_DH 93.9 0.12 2.5E-06 51.7 6.2 36 573-613 17-52 (155)
147 PRK13940 glutamyl-tRNA reducta 93.9 0.12 2.6E-06 60.8 7.1 75 175-274 178-252 (414)
148 PRK13940 glutamyl-tRNA reducta 93.9 0.093 2E-06 61.7 6.2 77 571-685 177-253 (414)
149 PF02254 TrkA_N: TrkA-N domain 93.8 0.78 1.7E-05 43.4 11.5 87 181-295 1-93 (116)
150 PRK07066 3-hydroxybutyryl-CoA 93.8 0.22 4.8E-06 56.6 8.8 171 576-770 8-182 (321)
151 COG0569 TrkA K+ transport syst 93.7 0.25 5.4E-06 53.4 8.7 98 576-706 1-99 (225)
152 PRK04148 hypothetical protein; 93.7 0.57 1.2E-05 46.6 10.3 89 178-297 17-108 (134)
153 COG0169 AroE Shikimate 5-dehyd 93.6 0.17 3.6E-06 56.5 7.3 74 574-682 125-198 (283)
154 PRK06130 3-hydroxybutyryl-CoA 93.6 0.41 8.8E-06 53.9 10.6 32 576-613 5-36 (311)
155 PRK12749 quinate/shikimate deh 93.4 0.18 3.9E-06 56.5 7.2 83 573-682 122-204 (288)
156 PF03435 Saccharop_dh: Sacchar 93.3 0.25 5.5E-06 57.3 8.5 90 181-296 1-96 (386)
157 PRK12749 quinate/shikimate deh 93.3 0.3 6.5E-06 54.7 8.8 52 176-243 122-173 (288)
158 PLN00203 glutamyl-tRNA reducta 93.2 0.19 4.1E-06 60.7 7.3 75 176-273 264-338 (519)
159 PF02737 3HCDH_N: 3-hydroxyacy 93.1 0.09 2E-06 54.7 4.0 163 577-762 1-170 (180)
160 PRK00066 ldh L-lactate dehydro 93.1 0.38 8.2E-06 54.6 9.3 76 177-273 5-82 (315)
161 cd00300 LDH_like L-lactate deh 93.1 0.72 1.6E-05 51.9 11.4 71 181-273 1-75 (300)
162 PF02826 2-Hacid_dh_C: D-isome 93.0 0.028 6E-07 58.3 -0.1 93 570-681 31-126 (178)
163 cd05213 NAD_bind_Glutamyl_tRNA 92.9 0.36 7.8E-06 54.6 8.7 76 176-277 176-251 (311)
164 PRK08293 3-hydroxybutyryl-CoA 92.8 0.79 1.7E-05 51.1 11.2 33 576-614 4-36 (287)
165 cd01065 NAD_bind_Shikimate_DH 92.7 0.39 8.5E-06 47.8 7.7 35 176-210 17-51 (155)
166 PF01113 DapB_N: Dihydrodipico 92.6 0.34 7.4E-06 47.3 7.0 99 577-711 2-102 (124)
167 COG0569 TrkA K+ transport syst 92.6 0.76 1.7E-05 49.6 10.3 105 179-311 1-113 (225)
168 PRK09260 3-hydroxybutyryl-CoA 92.4 0.11 2.3E-06 57.9 3.7 33 576-614 2-34 (288)
169 COG1086 Predicted nucleoside-d 92.4 0.43 9.3E-06 57.3 8.7 87 568-681 243-332 (588)
170 cd05290 LDH_3 A subgroup of L- 92.3 0.53 1.2E-05 53.2 9.1 73 180-273 1-77 (307)
171 TIGR01035 hemA glutamyl-tRNA r 92.3 0.31 6.8E-06 57.4 7.5 36 175-210 177-212 (417)
172 cd05291 HicDH_like L-2-hydroxy 92.3 0.37 8.1E-06 54.3 7.8 74 576-684 1-78 (306)
173 cd01080 NAD_bind_m-THF_DH_Cycl 92.2 0.19 4.1E-06 51.9 4.9 35 572-612 41-76 (168)
174 KOG4169 15-hydroxyprostaglandi 92.2 0.24 5.2E-06 53.2 5.6 83 573-681 3-90 (261)
175 PLN02602 lactate dehydrogenase 92.1 0.45 9.8E-06 54.8 8.3 73 179-273 38-114 (350)
176 KOG4169 15-hydroxyprostaglandi 92.1 0.36 7.8E-06 51.9 6.8 63 176-259 3-66 (261)
177 cd05311 NAD_bind_2_malic_enz N 92.1 0.12 2.6E-06 55.8 3.4 37 572-613 22-60 (226)
178 PRK05708 2-dehydropantoate 2-r 92.0 0.66 1.4E-05 52.3 9.3 33 178-211 2-34 (305)
179 COG1648 CysG Siroheme synthase 92.0 0.36 7.8E-06 51.7 6.8 96 572-706 9-104 (210)
180 cd05293 LDH_1 A subgroup of L- 91.9 0.51 1.1E-05 53.5 8.4 74 178-273 3-80 (312)
181 PRK10637 cysG siroheme synthas 91.9 0.43 9.4E-06 56.9 8.1 93 572-703 9-101 (457)
182 PRK09599 6-phosphogluconate de 91.9 0.44 9.6E-06 53.5 7.8 112 180-302 2-123 (301)
183 PRK07530 3-hydroxybutyryl-CoA 91.5 0.56 1.2E-05 52.3 8.1 32 576-613 5-36 (292)
184 PRK05808 3-hydroxybutyryl-CoA 91.5 0.96 2.1E-05 50.2 9.8 33 179-212 4-36 (282)
185 PRK07819 3-hydroxybutyryl-CoA 91.3 0.75 1.6E-05 51.4 8.8 34 179-213 6-39 (286)
186 cd05311 NAD_bind_2_malic_enz N 91.3 0.24 5.1E-06 53.6 4.6 38 175-212 22-61 (226)
187 COG0111 SerA Phosphoglycerate 91.2 0.22 4.8E-06 56.7 4.5 90 572-681 139-232 (324)
188 COG0300 DltE Short-chain dehyd 91.1 0.6 1.3E-05 51.7 7.5 83 573-681 4-91 (265)
189 PF00056 Ldh_1_N: lactate/mala 91.0 0.63 1.4E-05 46.5 7.0 76 576-684 1-79 (141)
190 cd01078 NAD_bind_H4MPT_DH NADP 90.9 0.92 2E-05 47.4 8.5 78 175-273 25-106 (194)
191 PF10585 UBA_e1_thiolCys: Ubiq 90.8 0.2 4.2E-06 40.5 2.6 23 805-827 23-45 (45)
192 PF01118 Semialdhyde_dh: Semia 90.8 0.46 1E-05 46.0 5.7 49 670-719 62-111 (121)
193 cd01075 NAD_bind_Leu_Phe_Val_D 90.8 1.1 2.5E-05 47.4 9.1 36 175-211 25-60 (200)
194 PF03807 F420_oxidored: NADP o 90.7 1.5 3.4E-05 40.0 8.9 78 180-284 1-81 (96)
195 PTZ00117 malate dehydrogenase; 90.7 0.69 1.5E-05 52.6 7.8 35 177-211 4-38 (319)
196 cd05290 LDH_3 A subgroup of L- 90.7 0.58 1.3E-05 52.9 7.2 74 577-683 1-77 (307)
197 PF02737 3HCDH_N: 3-hydroxyacy 90.4 0.48 1.1E-05 49.3 5.8 33 180-213 1-33 (180)
198 PTZ00082 L-lactate dehydrogena 90.4 0.79 1.7E-05 52.2 7.9 37 573-614 4-40 (321)
199 PRK07066 3-hydroxybutyryl-CoA 90.4 0.48 1E-05 53.9 6.2 109 179-302 8-122 (321)
200 TIGR00872 gnd_rel 6-phosphoglu 90.3 0.39 8.4E-06 53.9 5.4 110 180-301 2-121 (298)
201 PRK01710 murD UDP-N-acetylmura 90.3 1.2 2.6E-05 53.1 9.8 96 174-296 10-106 (458)
202 PRK00066 ldh L-lactate dehydro 90.3 0.65 1.4E-05 52.7 7.2 76 575-683 6-82 (315)
203 PRK05476 S-adenosyl-L-homocyst 90.3 0.84 1.8E-05 53.9 8.2 36 573-614 210-245 (425)
204 PRK05854 short chain dehydroge 90.2 0.61 1.3E-05 52.5 6.8 35 573-613 12-47 (313)
205 PRK06130 3-hydroxybutyryl-CoA 90.1 1.9 4.1E-05 48.5 10.6 32 179-211 5-36 (311)
206 TIGR02992 ectoine_eutC ectoine 90.0 1.1 2.4E-05 51.1 8.7 75 178-274 129-204 (326)
207 TIGR00507 aroE shikimate 5-deh 90.0 0.95 2.1E-05 50.1 8.0 33 574-612 116-148 (270)
208 PRK06197 short chain dehydroge 89.9 0.57 1.2E-05 52.3 6.3 37 571-613 12-49 (306)
209 PRK07634 pyrroline-5-carboxyla 89.9 1.6 3.5E-05 47.0 9.6 81 177-284 3-86 (245)
210 PRK07530 3-hydroxybutyryl-CoA 89.9 3.3 7.1E-05 46.2 12.3 33 178-211 4-36 (292)
211 PRK01438 murD UDP-N-acetylmura 89.8 1.1 2.4E-05 53.5 9.0 93 176-295 14-106 (480)
212 PLN02545 3-hydroxybutyryl-CoA 89.7 1.5 3.2E-05 49.0 9.4 33 179-212 5-37 (295)
213 PRK07063 short chain dehydroge 89.7 0.9 2E-05 49.1 7.5 64 572-660 4-68 (260)
214 PF00070 Pyr_redox: Pyridine n 89.7 1.5 3.2E-05 39.1 7.5 54 180-245 1-54 (80)
215 PRK11880 pyrroline-5-carboxyla 89.7 1.2 2.7E-05 48.8 8.6 34 576-612 3-36 (267)
216 PRK06197 short chain dehydroge 89.6 1.1 2.5E-05 49.8 8.4 42 168-210 6-48 (306)
217 cd01078 NAD_bind_H4MPT_DH NADP 89.5 0.83 1.8E-05 47.8 6.7 83 572-685 25-108 (194)
218 PRK00141 murD UDP-N-acetylmura 89.4 1.2 2.5E-05 53.5 8.8 94 172-296 9-103 (473)
219 PRK04148 hypothetical protein; 89.3 2.3 5E-05 42.4 9.2 92 574-704 16-107 (134)
220 PRK12490 6-phosphogluconate de 89.3 0.71 1.5E-05 51.8 6.4 112 180-302 2-123 (299)
221 PRK07502 cyclohexadienyl dehyd 89.3 1.7 3.6E-05 48.9 9.4 34 178-211 6-40 (307)
222 PLN02819 lysine-ketoglutarate 89.2 1.4 3E-05 57.4 9.6 104 574-706 568-679 (1042)
223 PRK03659 glutathione-regulated 89.2 2 4.3E-05 53.1 10.8 90 178-295 400-495 (601)
224 PRK00045 hemA glutamyl-tRNA re 89.1 0.65 1.4E-05 54.8 6.2 36 176-211 180-215 (423)
225 cd01080 NAD_bind_m-THF_DH_Cycl 89.1 0.73 1.6E-05 47.6 5.8 35 175-210 41-76 (168)
226 PF02134 UBACT: Repeat in ubiq 89.1 1.1 2.5E-05 39.1 6.1 61 461-524 6-66 (67)
227 PRK07062 short chain dehydroge 89.1 1.3 2.8E-05 48.0 8.1 63 573-660 6-69 (265)
228 PTZ00082 L-lactate dehydrogena 89.0 1.2 2.6E-05 50.7 8.1 79 176-272 4-82 (321)
229 PRK15469 ghrA bifunctional gly 89.0 0.65 1.4E-05 52.7 5.9 34 573-612 134-167 (312)
230 PRK09242 tropinone reductase; 88.9 1.3 2.8E-05 47.7 8.0 86 572-682 6-96 (257)
231 PRK09496 trkA potassium transp 88.9 1.7 3.8E-05 51.2 9.7 94 176-297 229-328 (453)
232 PRK14192 bifunctional 5,10-met 88.8 0.7 1.5E-05 51.7 5.8 34 572-611 156-190 (283)
233 cd05293 LDH_1 A subgroup of L- 88.7 1.2 2.6E-05 50.6 7.7 75 575-683 3-80 (312)
234 PRK06141 ornithine cyclodeamin 88.7 1.3 2.8E-05 50.3 8.0 77 175-274 122-199 (314)
235 TIGR00507 aroE shikimate 5-deh 88.5 1.5 3.2E-05 48.5 8.2 33 177-210 116-148 (270)
236 PF01113 DapB_N: Dihydrodipico 88.5 1.8 3.8E-05 42.3 7.8 95 180-299 2-99 (124)
237 PRK03562 glutathione-regulated 88.4 2 4.2E-05 53.4 10.0 88 178-293 400-493 (621)
238 PRK07531 bifunctional 3-hydrox 88.4 2.3 5E-05 51.3 10.4 33 576-614 5-37 (495)
239 PLN00203 glutamyl-tRNA reducta 88.4 0.78 1.7E-05 55.5 6.3 35 573-612 264-298 (519)
240 PLN02350 phosphogluconate dehy 88.3 0.9 1.9E-05 54.7 6.7 117 179-302 7-136 (493)
241 TIGR00873 gnd 6-phosphoglucona 88.3 0.8 1.7E-05 54.8 6.2 116 180-301 1-126 (467)
242 PRK13403 ketol-acid reductoiso 88.1 1.7 3.6E-05 49.5 8.2 37 173-210 11-47 (335)
243 PRK07679 pyrroline-5-carboxyla 88.1 2.8 6E-05 46.5 10.1 82 177-285 2-86 (279)
244 PTZ00142 6-phosphogluconate de 88.1 0.7 1.5E-05 55.3 5.7 116 179-301 2-129 (470)
245 PRK13243 glyoxylate reductase; 88.1 0.67 1.5E-05 53.0 5.3 35 572-612 147-181 (333)
246 TIGR01759 MalateDH-SF1 malate 88.1 0.98 2.1E-05 51.5 6.6 76 179-273 4-88 (323)
247 PTZ00325 malate dehydrogenase; 88.0 1.1 2.3E-05 51.2 6.8 77 176-273 6-85 (321)
248 PRK07574 formate dehydrogenase 88.0 0.52 1.1E-05 55.0 4.3 35 572-612 189-223 (385)
249 PF01210 NAD_Gly3P_dh_N: NAD-d 88.0 1.5 3.3E-05 44.4 7.2 102 577-710 1-106 (157)
250 PRK08410 2-hydroxyacid dehydro 88.0 0.93 2E-05 51.4 6.3 87 572-681 142-231 (311)
251 PRK02705 murD UDP-N-acetylmura 87.7 2.1 4.5E-05 50.8 9.3 125 179-332 1-130 (459)
252 PRK14619 NAD(P)H-dependent gly 87.7 1.3 2.9E-05 49.8 7.3 33 575-613 4-36 (308)
253 PRK08293 3-hydroxybutyryl-CoA 87.7 4.4 9.5E-05 45.2 11.3 32 179-211 4-35 (287)
254 PLN02602 lactate dehydrogenase 87.7 1.2 2.6E-05 51.3 7.0 33 576-612 38-70 (350)
255 PLN03129 NADP-dependent malic 87.6 0.24 5.3E-06 59.9 1.3 109 571-706 317-435 (581)
256 PRK07831 short chain dehydroge 87.5 1.8 3.9E-05 46.9 8.0 34 573-612 15-50 (262)
257 PRK07417 arogenate dehydrogena 87.5 2.2 4.7E-05 47.4 8.8 31 577-613 2-32 (279)
258 PRK08251 short chain dehydroge 87.5 1.9 4E-05 46.1 8.0 62 575-661 2-64 (248)
259 PLN03096 glyceraldehyde-3-phos 87.5 0.72 1.6E-05 53.7 5.0 134 574-722 59-196 (395)
260 cd00401 AdoHcyase S-adenosyl-L 87.4 1.6 3.4E-05 51.5 7.8 36 573-614 200-235 (413)
261 PRK06487 glycerate dehydrogena 87.4 0.89 1.9E-05 51.7 5.7 35 572-612 145-179 (317)
262 COG0771 MurD UDP-N-acetylmuram 87.2 1.4 3E-05 52.3 7.2 92 176-295 5-97 (448)
263 PRK08618 ornithine cyclodeamin 87.2 2.2 4.8E-05 48.6 8.8 79 176-276 125-204 (325)
264 PRK11154 fadJ multifunctional 87.2 0.72 1.6E-05 58.0 5.2 171 576-770 310-488 (708)
265 PRK07417 arogenate dehydrogena 86.9 2.8 6E-05 46.6 9.2 31 180-211 2-32 (279)
266 PLN02780 ketoreductase/ oxidor 86.8 1.8 4E-05 49.0 7.9 61 575-660 53-114 (320)
267 PRK08618 ornithine cyclodeamin 86.8 2 4.4E-05 48.9 8.2 146 501-685 49-203 (325)
268 cd05191 NAD_bind_amino_acid_DH 86.8 0.75 1.6E-05 41.8 3.8 38 572-614 20-57 (86)
269 PRK15438 erythronate-4-phospha 86.8 1.5 3.2E-05 51.1 7.1 87 572-681 113-206 (378)
270 PRK00094 gpsA NAD(P)H-dependen 86.8 3.9 8.5E-05 45.9 10.4 32 180-212 3-34 (325)
271 PRK15469 ghrA bifunctional gly 86.8 2.6 5.6E-05 47.9 8.9 43 167-210 125-167 (312)
272 PRK09496 trkA potassium transp 86.7 2.8 6E-05 49.5 9.6 93 574-699 230-322 (453)
273 PLN02206 UDP-glucuronate decar 86.7 3.8 8.2E-05 48.8 10.6 103 178-305 119-239 (442)
274 cd05191 NAD_bind_amino_acid_DH 86.7 1.1 2.4E-05 40.7 4.8 36 175-210 20-55 (86)
275 PRK06035 3-hydroxyacyl-CoA deh 86.6 1.6 3.6E-05 48.6 7.2 33 179-212 4-36 (291)
276 PRK06522 2-dehydropantoate 2-r 86.6 3.8 8.2E-05 45.5 10.1 31 180-211 2-32 (304)
277 cd00300 LDH_like L-lactate deh 86.6 1.8 4E-05 48.7 7.6 72 578-683 1-75 (300)
278 PRK09260 3-hydroxybutyryl-CoA 86.6 4.4 9.6E-05 45.1 10.6 34 179-213 2-35 (288)
279 PRK07340 ornithine cyclodeamin 86.4 1.7 3.8E-05 49.0 7.3 76 175-274 122-198 (304)
280 PRK14619 NAD(P)H-dependent gly 86.4 3.5 7.5E-05 46.5 9.7 33 178-211 4-36 (308)
281 PRK06436 glycerate dehydrogena 86.3 0.79 1.7E-05 51.8 4.5 36 572-613 119-154 (303)
282 PRK07680 late competence prote 86.3 4.6 0.0001 44.6 10.5 78 180-284 2-82 (273)
283 PRK06932 glycerate dehydrogena 86.3 1 2.3E-05 51.1 5.4 35 572-612 144-178 (314)
284 COG0039 Mdh Malate/lactate deh 86.3 1.2 2.7E-05 50.4 5.9 32 179-210 1-33 (313)
285 PLN03139 formate dehydrogenase 86.2 0.62 1.3E-05 54.3 3.6 35 572-612 196-230 (386)
286 TIGR00936 ahcY adenosylhomocys 86.1 2.2 4.7E-05 50.2 8.0 36 573-614 193-228 (406)
287 PF02254 TrkA_N: TrkA-N domain 86.1 3 6.6E-05 39.4 7.7 85 578-697 1-85 (116)
288 PRK05854 short chain dehydroge 86.0 3.5 7.6E-05 46.4 9.5 59 175-253 11-70 (313)
289 PF02826 2-Hacid_dh_C: D-isome 86.0 0.69 1.5E-05 47.9 3.5 43 170-213 28-70 (178)
290 PRK06223 malate dehydrogenase; 85.9 5.4 0.00012 44.8 10.9 32 179-210 3-34 (307)
291 PLN02819 lysine-ketoglutarate 85.9 2 4.4E-05 55.9 8.3 96 177-298 568-679 (1042)
292 PF03807 F420_oxidored: NADP o 85.8 2.8 6.1E-05 38.3 7.1 90 577-704 1-92 (96)
293 PRK07576 short chain dehydroge 85.8 1.5 3.3E-05 47.7 6.3 37 571-613 5-42 (264)
294 cd01339 LDH-like_MDH L-lactate 85.7 6.2 0.00013 44.3 11.3 31 181-211 1-31 (300)
295 PRK00048 dihydrodipicolinate r 85.7 2.8 6E-05 46.2 8.2 128 576-758 2-131 (257)
296 PRK10537 voltage-gated potassi 85.7 2 4.4E-05 50.3 7.5 93 173-295 235-333 (393)
297 PRK07531 bifunctional 3-hydrox 85.7 4.8 0.0001 48.6 11.0 33 179-212 5-37 (495)
298 cd01075 NAD_bind_Leu_Phe_Val_D 85.6 0.81 1.7E-05 48.5 3.9 36 572-613 25-60 (200)
299 PF01118 Semialdhyde_dh: Semia 85.6 4.3 9.2E-05 39.3 8.6 92 180-295 1-94 (121)
300 PRK11730 fadB multifunctional 85.5 0.94 2E-05 57.1 5.0 170 576-770 314-491 (715)
301 PF00106 adh_short: short chai 85.5 1.2 2.5E-05 44.5 4.8 84 576-683 1-89 (167)
302 TIGR00465 ilvC ketol-acid redu 85.5 3.6 7.9E-05 46.8 9.2 33 176-209 1-33 (314)
303 PTZ00431 pyrroline carboxylate 85.5 4 8.7E-05 44.9 9.4 74 177-285 2-78 (260)
304 PRK04308 murD UDP-N-acetylmura 85.4 3.1 6.7E-05 49.3 9.1 92 176-295 3-95 (445)
305 PLN03209 translocon at the inn 85.3 3.3 7.1E-05 50.7 9.2 34 574-613 79-113 (576)
306 PRK07478 short chain dehydroge 85.3 1.7 3.6E-05 46.8 6.3 35 573-613 4-39 (254)
307 PRK09242 tropinone reductase; 85.3 4.5 9.8E-05 43.5 9.6 63 175-257 6-69 (257)
308 TIGR00872 gnd_rel 6-phosphoglu 85.3 0.94 2E-05 50.9 4.4 32 577-614 2-33 (298)
309 PRK05479 ketol-acid reductoiso 85.2 2.8 6.1E-05 47.9 8.2 35 174-209 13-47 (330)
310 TIGR01915 npdG NADPH-dependent 85.2 6.5 0.00014 42.0 10.6 84 180-284 2-88 (219)
311 cd05292 LDH_2 A subgroup of L- 85.2 3.1 6.7E-05 47.0 8.6 31 180-210 2-33 (308)
312 PRK00257 erythronate-4-phospha 85.2 1.1 2.3E-05 52.4 4.9 35 572-612 113-147 (381)
313 PRK05708 2-dehydropantoate 2-r 85.1 0.76 1.7E-05 51.8 3.6 33 575-613 2-34 (305)
314 PF13460 NAD_binding_10: NADH( 85.1 5.3 0.00011 40.6 9.5 93 181-304 1-103 (183)
315 COG1250 FadB 3-hydroxyacyl-CoA 85.0 1.5 3.2E-05 49.7 5.7 107 576-710 4-121 (307)
316 PRK08217 fabG 3-ketoacyl-(acyl 85.0 2 4.3E-05 45.8 6.6 35 573-613 3-38 (253)
317 cd01338 MDH_choloroplast_like 84.9 1.3 2.8E-05 50.5 5.4 74 179-273 3-87 (322)
318 PRK07063 short chain dehydroge 84.8 3.5 7.5E-05 44.5 8.5 34 175-209 4-38 (260)
319 PRK13529 malate dehydrogenase; 84.8 0.47 1E-05 57.2 1.9 133 556-707 258-417 (563)
320 PF00670 AdoHcyase_NAD: S-aden 84.8 1.9 4.2E-05 44.3 6.0 39 571-615 19-57 (162)
321 PRK05867 short chain dehydroge 84.8 1.8 3.9E-05 46.6 6.2 34 573-612 7-41 (253)
322 PRK00048 dihydrodipicolinate r 84.7 4.8 0.0001 44.3 9.5 34 179-212 2-37 (257)
323 PTZ00431 pyrroline carboxylate 84.7 2.4 5.3E-05 46.6 7.2 38 574-613 2-39 (260)
324 PRK06523 short chain dehydroge 84.6 2.4 5.1E-05 45.7 7.1 76 572-655 6-83 (260)
325 PRK12826 3-ketoacyl-(acyl-carr 84.6 1.7 3.7E-05 46.2 5.9 36 573-614 4-40 (251)
326 PF02558 ApbA: Ketopantoate re 84.6 0.97 2.1E-05 44.9 3.7 88 181-287 1-90 (151)
327 PLN02240 UDP-glucose 4-epimera 84.6 7.8 0.00017 43.8 11.5 34 176-210 3-37 (352)
328 PRK07576 short chain dehydroge 84.5 3.2 6.9E-05 45.2 8.0 40 171-211 2-42 (264)
329 PTZ00325 malate dehydrogenase; 84.4 1.7 3.7E-05 49.6 6.0 36 573-612 6-42 (321)
330 PRK08291 ectoine utilization p 84.4 3.7 8.1E-05 46.8 8.8 75 178-274 132-207 (330)
331 PRK15059 tartronate semialdehy 84.3 3.1 6.8E-05 46.6 8.0 108 180-301 2-121 (292)
332 PRK07062 short chain dehydroge 84.3 5 0.00011 43.4 9.5 60 176-255 6-66 (265)
333 cd00650 LDH_MDH_like NAD-depen 84.2 2.9 6.3E-05 46.0 7.6 71 181-272 1-78 (263)
334 TIGR02440 FadJ fatty oxidation 84.2 1.2 2.6E-05 56.0 5.1 171 576-770 305-483 (699)
335 PRK02472 murD UDP-N-acetylmura 84.1 3.4 7.3E-05 48.8 8.6 93 176-296 3-97 (447)
336 PRK06928 pyrroline-5-carboxyla 84.0 6.2 0.00014 43.8 10.2 79 180-284 3-84 (277)
337 TIGR02279 PaaC-3OHAcCoADH 3-hy 84.0 4.4 9.4E-05 49.1 9.5 34 178-212 5-38 (503)
338 PF01210 NAD_Gly3P_dh_N: NAD-d 83.9 4 8.7E-05 41.4 7.9 32 180-212 1-32 (157)
339 PRK12491 pyrroline-5-carboxyla 83.8 8.1 0.00018 42.9 11.0 80 178-285 2-84 (272)
340 PRK05335 tRNA (uracil-5-)-meth 83.8 0.94 2E-05 53.5 3.7 34 575-614 2-35 (436)
341 PRK12921 2-dehydropantoate 2-r 83.8 5.8 0.00012 44.2 9.9 30 180-210 2-31 (305)
342 PRK14175 bifunctional 5,10-met 83.7 1.9 4.1E-05 48.3 5.8 34 572-611 155-189 (286)
343 PF00106 adh_short: short chai 83.7 4.8 0.0001 40.1 8.4 32 180-211 2-34 (167)
344 PRK06249 2-dehydropantoate 2-r 83.7 1.5 3.3E-05 49.5 5.2 34 178-212 5-38 (313)
345 KOG0069 Glyoxylate/hydroxypyru 83.7 4.6 9.9E-05 46.2 8.9 88 170-289 154-244 (336)
346 TIGR02992 ectoine_eutC ectoine 83.6 3.1 6.8E-05 47.4 7.8 146 500-684 49-204 (326)
347 PRK04690 murD UDP-N-acetylmura 83.6 3.3 7E-05 49.6 8.3 92 176-296 6-98 (468)
348 PRK04663 murD UDP-N-acetylmura 83.6 2.5 5.5E-05 50.0 7.3 125 174-332 2-129 (438)
349 PRK11908 NAD-dependent epimera 83.6 4.7 0.0001 45.8 9.2 32 576-613 2-35 (347)
350 TIGR01763 MalateDH_bact malate 83.6 8.7 0.00019 43.5 11.2 32 179-210 2-33 (305)
351 PRK09186 flagellin modificatio 83.6 3 6.5E-05 44.7 7.3 33 573-611 2-35 (256)
352 PF02056 Glyco_hydro_4: Family 83.6 3 6.6E-05 43.7 6.9 110 577-713 1-114 (183)
353 PTZ00317 NADP-dependent malic 83.6 0.66 1.4E-05 56.0 2.3 61 555-615 259-342 (559)
354 TIGR00518 alaDH alanine dehydr 83.5 2.1 4.5E-05 49.8 6.3 35 176-211 165-199 (370)
355 cd05296 GH4_P_beta_glucosidase 83.4 2.7 5.8E-05 49.7 7.2 109 180-308 2-117 (419)
356 PRK07340 ornithine cyclodeamin 83.3 1.7 3.8E-05 49.0 5.5 135 501-683 49-197 (304)
357 PRK06476 pyrroline-5-carboxyla 83.2 2.8 6E-05 45.9 6.9 23 577-599 2-24 (258)
358 PRK02006 murD UDP-N-acetylmura 83.2 3.6 7.8E-05 49.6 8.4 94 176-295 5-101 (498)
359 PRK14618 NAD(P)H-dependent gly 83.2 4.1 8.8E-05 46.3 8.5 31 180-211 6-36 (328)
360 PRK12826 3-ketoacyl-(acyl-carr 83.2 4 8.7E-05 43.3 8.0 36 175-211 3-39 (251)
361 TIGR01757 Malate-DH_plant mala 83.2 3.4 7.3E-05 48.3 7.8 77 178-273 44-129 (387)
362 COG1893 ApbA Ketopantoate redu 83.1 5.3 0.00012 45.2 9.3 23 576-598 1-23 (307)
363 TIGR02437 FadB fatty oxidation 83.1 1.6 3.4E-05 55.1 5.5 33 576-614 314-346 (714)
364 PRK06141 ornithine cyclodeamin 83.1 2.6 5.6E-05 47.8 6.8 141 501-683 48-198 (314)
365 PRK11880 pyrroline-5-carboxyla 82.9 6.1 0.00013 43.3 9.5 78 179-284 3-82 (267)
366 PRK14620 NAD(P)H-dependent gly 82.9 3.6 7.7E-05 46.7 7.8 102 180-302 2-109 (326)
367 PF02558 ApbA: Ketopantoate re 82.8 1.3 2.8E-05 44.0 3.8 29 578-612 1-29 (151)
368 PRK03562 glutathione-regulated 82.8 1.5 3.2E-05 54.5 5.1 89 575-698 400-488 (621)
369 PRK06940 short chain dehydroge 82.8 2.7 6E-05 46.2 6.7 32 575-613 2-33 (275)
370 TIGR01771 L-LDH-NAD L-lactate 82.8 2.6 5.6E-05 47.5 6.6 68 183-273 1-73 (299)
371 PRK05875 short chain dehydroge 82.6 2.5 5.5E-05 46.0 6.4 36 572-613 4-40 (276)
372 PRK10669 putative cation:proto 82.6 6.7 0.00015 48.0 10.6 90 178-295 417-512 (558)
373 PLN02206 UDP-glucuronate decar 82.6 3.9 8.5E-05 48.6 8.3 34 574-613 118-152 (442)
374 COG1893 ApbA Ketopantoate redu 82.5 3.9 8.5E-05 46.3 7.9 84 179-289 1-92 (307)
375 PRK06129 3-hydroxyacyl-CoA deh 82.5 7.5 0.00016 43.8 10.2 109 179-302 3-121 (308)
376 TIGR03589 PseB UDP-N-acetylglu 82.4 13 0.00028 42.0 12.1 36 176-211 2-39 (324)
377 PRK08655 prephenate dehydrogen 82.4 5.3 0.00011 47.5 9.3 31 577-613 2-33 (437)
378 PLN00016 RNA-binding protein; 82.4 5.8 0.00013 45.8 9.5 113 174-305 48-171 (378)
379 PRK05442 malate dehydrogenase; 82.4 2.1 4.5E-05 49.0 5.6 32 179-210 5-43 (326)
380 PRK12384 sorbitol-6-phosphate 82.3 4.5 9.7E-05 43.6 8.1 33 575-613 2-35 (259)
381 PRK08229 2-dehydropantoate 2-r 82.3 8.2 0.00018 43.8 10.5 94 180-302 4-110 (341)
382 COG1023 Gnd Predicted 6-phosph 82.3 2.9 6.2E-05 45.5 6.2 121 180-312 2-138 (300)
383 PLN03209 translocon at the inn 82.3 8.4 0.00018 47.2 11.0 105 176-301 78-210 (576)
384 TIGR01035 hemA glutamyl-tRNA r 82.2 1.2 2.6E-05 52.5 3.8 36 572-612 177-212 (417)
385 PRK09599 6-phosphogluconate de 82.2 2 4.4E-05 48.2 5.5 118 577-710 2-123 (301)
386 PRK12367 short chain dehydroge 82.1 1.6 3.5E-05 47.4 4.5 39 569-613 8-47 (245)
387 PRK03803 murD UDP-N-acetylmura 82.0 4.2 9E-05 48.2 8.3 123 178-332 6-129 (448)
388 PRK05866 short chain dehydroge 82.0 2.9 6.2E-05 46.6 6.5 35 573-613 38-73 (293)
389 PRK06476 pyrroline-5-carboxyla 82.0 6.3 0.00014 43.1 9.1 23 180-202 2-24 (258)
390 COG1063 Tdh Threonine dehydrog 82.0 5.3 0.00012 46.0 8.9 97 577-703 171-267 (350)
391 PRK07792 fabG 3-ketoacyl-(acyl 81.9 2.7 5.8E-05 47.1 6.3 36 571-612 8-44 (306)
392 PTZ00117 malate dehydrogenase; 81.9 1.4 2.9E-05 50.2 3.9 35 574-613 4-38 (319)
393 PRK06249 2-dehydropantoate 2-r 81.7 1.3 2.9E-05 49.9 3.8 34 575-614 5-38 (313)
394 PRK12861 malic enzyme; Reviewe 81.7 0.64 1.4E-05 58.4 1.3 42 571-615 185-226 (764)
395 cd00704 MDH Malate dehydrogena 81.5 1.5 3.3E-05 49.9 4.2 33 179-211 1-40 (323)
396 TIGR03206 benzo_BadH 2-hydroxy 81.5 3.1 6.7E-05 44.4 6.4 35 573-613 1-36 (250)
397 PRK07831 short chain dehydroge 81.5 7.1 0.00015 42.2 9.3 35 175-210 14-50 (262)
398 PRK07067 sorbitol dehydrogenas 81.4 2.5 5.4E-05 45.5 5.7 36 573-614 4-40 (257)
399 PRK06522 2-dehydropantoate 2-r 81.4 1.5 3.2E-05 48.8 4.0 31 577-613 2-32 (304)
400 PLN02166 dTDP-glucose 4,6-dehy 81.4 8.1 0.00017 45.9 10.3 101 179-304 121-239 (436)
401 PLN02688 pyrroline-5-carboxyla 81.4 9.5 0.00021 41.8 10.3 77 180-284 2-81 (266)
402 cd00762 NAD_bind_malic_enz NAD 81.4 1.1 2.3E-05 49.3 2.7 38 571-613 21-68 (254)
403 PF10727 Rossmann-like: Rossma 81.3 3 6.6E-05 41.1 5.7 82 177-286 9-90 (127)
404 PRK11559 garR tartronate semia 81.3 4.2 9E-05 45.4 7.5 33 179-212 3-35 (296)
405 PRK05225 ketol-acid reductoiso 81.3 3.4 7.4E-05 49.0 6.9 42 163-204 17-62 (487)
406 PLN02688 pyrroline-5-carboxyla 81.2 6.5 0.00014 43.1 8.9 23 577-599 2-24 (266)
407 PRK12939 short chain dehydroge 81.1 3.3 7.3E-05 44.0 6.5 33 573-611 5-38 (250)
408 PRK08268 3-hydroxy-acyl-CoA de 81.1 4.8 0.00011 48.8 8.5 33 179-212 8-40 (507)
409 PRK08251 short chain dehydroge 81.1 9.2 0.0002 40.8 9.9 61 178-258 2-63 (248)
410 cd01337 MDH_glyoxysomal_mitoch 81.0 3.5 7.6E-05 46.8 6.8 73 180-273 2-77 (310)
411 PRK14982 acyl-ACP reductase; P 81.0 1.5 3.2E-05 50.4 3.8 37 572-613 152-190 (340)
412 PRK12827 short chain dehydroge 80.9 3.7 8.1E-05 43.5 6.8 34 573-612 4-38 (249)
413 PLN02306 hydroxypyruvate reduc 80.9 1.6 3.5E-05 51.0 4.2 35 572-612 162-197 (386)
414 PRK08291 ectoine utilization p 80.9 4.7 0.0001 46.0 7.9 145 501-684 53-207 (330)
415 KOG0069 Glyoxylate/hydroxypyru 80.8 0.96 2.1E-05 51.6 2.2 87 571-701 158-245 (336)
416 PRK11790 D-3-phosphoglycerate 80.8 2.1 4.6E-05 50.4 5.2 35 572-612 148-182 (409)
417 PRK12771 putative glutamate sy 80.8 5.4 0.00012 48.9 8.9 35 177-212 136-170 (564)
418 PRK07231 fabG 3-ketoacyl-(acyl 80.7 6.6 0.00014 41.7 8.6 74 175-271 2-88 (251)
419 cd05213 NAD_bind_Glutamyl_tRNA 80.7 1.5 3.2E-05 49.7 3.7 76 573-687 176-251 (311)
420 TIGR01181 dTDP_gluc_dehyt dTDP 80.5 11 0.00024 41.4 10.6 31 180-210 1-33 (317)
421 TIGR02441 fa_ox_alpha_mit fatt 80.5 1.7 3.7E-05 55.0 4.5 171 576-770 336-513 (737)
422 cd05211 NAD_bind_Glu_Leu_Phe_V 80.5 2.2 4.7E-05 45.9 4.7 38 175-212 20-57 (217)
423 PF10727 Rossmann-like: Rossma 80.4 7.3 0.00016 38.5 8.0 83 574-697 9-91 (127)
424 PRK06139 short chain dehydroge 80.1 3.1 6.6E-05 47.5 6.0 35 572-612 4-39 (330)
425 PF13460 NAD_binding_10: NADH( 80.1 8.5 0.00018 39.1 8.8 86 578-701 1-91 (183)
426 PRK08507 prephenate dehydrogen 80.1 8.2 0.00018 42.7 9.3 31 180-210 2-33 (275)
427 PRK07102 short chain dehydroge 80.1 5.1 0.00011 42.7 7.5 32 576-613 2-34 (243)
428 PRK00811 spermidine synthase; 79.9 3.5 7.6E-05 46.1 6.3 95 155-271 56-157 (283)
429 PRK12439 NAD(P)H-dependent gly 79.9 5.2 0.00011 45.9 7.9 93 179-287 8-100 (341)
430 TIGR02853 spore_dpaA dipicolin 79.9 1.6 3.6E-05 48.9 3.7 35 572-612 148-182 (287)
431 PRK06398 aldose dehydrogenase; 79.9 4.3 9.4E-05 44.0 6.9 75 572-656 3-79 (258)
432 PLN02166 dTDP-glucose 4,6-dehy 79.9 5.9 0.00013 47.0 8.6 33 575-613 120-153 (436)
433 PRK03659 glutathione-regulated 79.9 4.9 0.00011 49.7 8.1 89 575-698 400-488 (601)
434 COG1250 FadB 3-hydroxyacyl-CoA 79.8 4.5 9.7E-05 45.8 7.1 33 178-211 3-35 (307)
435 PLN02427 UDP-apiose/xylose syn 79.8 8.8 0.00019 44.4 9.8 36 175-210 11-47 (386)
436 PF03446 NAD_binding_2: NAD bi 79.8 1.8 3.9E-05 44.1 3.7 31 576-612 2-32 (163)
437 TIGR02622 CDP_4_6_dhtase CDP-g 79.7 5.3 0.00011 45.4 7.9 35 176-211 2-37 (349)
438 PRK15409 bifunctional glyoxyla 79.7 2.5 5.4E-05 48.2 5.1 34 572-611 142-176 (323)
439 PRK13301 putative L-aspartate 79.7 2.2 4.8E-05 47.2 4.5 115 178-302 2-127 (267)
440 PLN00106 malate dehydrogenase 79.7 5.4 0.00012 45.6 7.8 74 177-271 17-93 (323)
441 PRK13302 putative L-aspartate 79.7 1.1 2.5E-05 49.6 2.3 36 176-211 4-41 (271)
442 cd05296 GH4_P_beta_glucosidase 79.7 4.8 0.0001 47.6 7.6 110 576-712 1-113 (419)
443 PRK12550 shikimate 5-dehydroge 79.7 2 4.3E-05 47.9 4.2 34 575-613 122-155 (272)
444 PRK09880 L-idonate 5-dehydroge 79.6 11 0.00025 42.6 10.5 34 177-210 169-202 (343)
445 PRK13302 putative L-aspartate 79.5 5.8 0.00013 44.1 7.8 88 574-703 5-95 (271)
446 TIGR01772 MDH_euk_gproteo mala 79.5 3.2 6.9E-05 47.2 5.9 70 180-271 1-74 (312)
447 PRK07634 pyrroline-5-carboxyla 79.4 7.9 0.00017 41.7 8.7 25 575-599 4-28 (245)
448 PRK13403 ketol-acid reductoiso 79.3 1.9 4.1E-05 49.1 3.9 36 570-611 11-46 (335)
449 PRK13304 L-aspartate dehydroge 79.3 6.5 0.00014 43.5 8.1 89 576-704 2-90 (265)
450 PRK06720 hypothetical protein; 79.3 4.6 0.0001 41.6 6.5 36 572-613 13-49 (169)
451 COG2084 MmsB 3-hydroxyisobutyr 79.3 6.1 0.00013 44.3 7.9 112 179-302 1-124 (286)
452 PRK00421 murC UDP-N-acetylmura 79.3 3.6 7.7E-05 49.1 6.5 121 177-332 6-128 (461)
453 PRK07814 short chain dehydroge 79.2 4.1 8.9E-05 44.2 6.5 35 573-613 8-43 (263)
454 PRK12550 shikimate 5-dehydroge 79.2 2.7 5.9E-05 46.8 5.1 32 179-210 123-154 (272)
455 PRK00676 hemA glutamyl-tRNA re 79.2 1.9 4E-05 49.5 3.8 36 571-611 170-205 (338)
456 PRK12480 D-lactate dehydrogena 79.0 1.9 4.2E-05 49.3 3.9 36 572-613 143-178 (330)
457 COG1063 Tdh Threonine dehydrog 79.0 6.5 0.00014 45.3 8.3 90 177-289 168-263 (350)
458 PRK11199 tyrA bifunctional cho 79.0 5.4 0.00012 46.4 7.7 32 179-211 99-131 (374)
459 TIGR00065 ftsZ cell division p 78.9 8.6 0.00019 44.4 9.2 113 169-300 8-140 (349)
460 TIGR00137 gid_trmFO tRNA:m(5)U 78.8 1.9 4E-05 51.1 3.8 32 576-613 1-32 (433)
461 PRK11154 fadJ multifunctional 78.8 9.7 0.00021 48.1 10.4 108 178-301 309-427 (708)
462 PRK07856 short chain dehydroge 78.8 5.6 0.00012 42.8 7.3 36 573-614 4-40 (252)
463 PRK06125 short chain dehydroge 78.7 5.8 0.00013 42.8 7.4 35 573-613 5-40 (259)
464 PRK00045 hemA glutamyl-tRNA re 78.7 1.8 4E-05 51.1 3.8 36 573-613 180-215 (423)
465 TIGR02853 spore_dpaA dipicolin 78.6 2.6 5.7E-05 47.2 4.8 35 175-210 148-182 (287)
466 PRK07679 pyrroline-5-carboxyla 78.5 4.2 9.2E-05 45.1 6.4 93 575-704 3-97 (279)
467 cd05211 NAD_bind_Glu_Leu_Phe_V 78.5 2.2 4.7E-05 46.0 3.9 38 572-614 20-57 (217)
468 PRK07097 gluconate 5-dehydroge 78.4 4.4 9.6E-05 43.9 6.5 35 572-612 7-42 (265)
469 PRK03369 murD UDP-N-acetylmura 78.4 5.4 0.00012 48.1 7.7 88 177-296 11-99 (488)
470 PLN02545 3-hydroxybutyryl-CoA 78.4 2.1 4.6E-05 47.8 4.0 33 576-614 5-37 (295)
471 PRK06035 3-hydroxyacyl-CoA deh 78.3 2.1 4.5E-05 47.8 3.9 33 576-614 4-36 (291)
472 PRK12491 pyrroline-5-carboxyla 78.3 7.9 0.00017 43.0 8.4 83 575-695 2-84 (272)
473 PRK13304 L-aspartate dehydroge 78.2 9.7 0.00021 42.1 9.1 32 180-211 3-36 (265)
474 PRK06181 short chain dehydroge 78.2 4.9 0.00011 43.4 6.7 31 576-612 2-33 (263)
475 PRK03806 murD UDP-N-acetylmura 78.1 5.6 0.00012 47.0 7.6 123 176-332 4-126 (438)
476 PRK11730 fadB multifunctional 78.1 7.7 0.00017 49.1 9.2 33 179-212 314-346 (715)
477 TIGR01505 tartro_sem_red 2-hyd 78.1 5.7 0.00012 44.2 7.3 32 180-212 1-32 (291)
478 PRK12409 D-amino acid dehydrog 78.0 2.1 4.5E-05 49.9 3.9 33 576-614 2-34 (410)
479 TIGR01292 TRX_reduct thioredox 78.0 7.1 0.00015 42.7 8.0 32 577-614 2-33 (300)
480 PRK00676 hemA glutamyl-tRNA re 77.9 2.8 6.1E-05 48.0 4.8 38 175-212 171-208 (338)
481 PLN02350 phosphogluconate dehy 77.9 8.8 0.00019 46.4 9.2 123 576-710 7-136 (493)
482 PRK12769 putative oxidoreducta 77.8 5.7 0.00012 49.6 7.9 34 574-613 326-359 (654)
483 PRK07478 short chain dehydroge 77.8 8.1 0.00017 41.5 8.2 35 175-210 3-38 (254)
484 PRK08643 acetoin reductase; Va 77.7 5.7 0.00012 42.7 7.0 33 575-613 2-35 (256)
485 PRK10669 putative cation:proto 77.6 5.4 0.00012 48.9 7.5 79 575-688 417-495 (558)
486 PRK10537 voltage-gated potassi 77.6 5.1 0.00011 47.0 6.9 89 574-699 239-327 (393)
487 TIGR03466 HpnA hopanoid-associ 77.5 6.5 0.00014 43.7 7.6 31 577-613 2-33 (328)
488 PRK12859 3-ketoacyl-(acyl-carr 77.4 6 0.00013 42.8 7.1 34 572-611 3-39 (256)
489 PRK06046 alanine dehydrogenase 77.3 9 0.0002 43.7 8.7 75 177-274 128-203 (326)
490 PRK15461 NADH-dependent gamma- 77.2 5.9 0.00013 44.4 7.1 33 179-212 2-34 (296)
491 PRK07774 short chain dehydroge 77.1 3.1 6.7E-05 44.4 4.7 35 573-613 4-39 (250)
492 TIGR01202 bchC 2-desacetyl-2-h 77.1 9.1 0.0002 42.9 8.6 82 177-289 144-225 (308)
493 PRK11908 NAD-dependent epimera 77.1 24 0.00051 40.1 12.1 31 180-210 3-34 (347)
494 PRK11259 solA N-methyltryptoph 77.0 2.4 5.2E-05 48.5 4.0 35 575-615 3-37 (376)
495 TIGR01327 PGDH D-3-phosphoglyc 77.0 2.6 5.7E-05 51.2 4.5 35 572-612 135-169 (525)
496 PRK08589 short chain dehydroge 77.0 8.8 0.00019 42.0 8.3 76 173-271 1-89 (272)
497 TIGR02437 FadB fatty oxidation 77.0 8.6 0.00019 48.6 9.1 33 179-212 314-346 (714)
498 PLN02928 oxidoreductase family 76.9 2.3 5.1E-05 48.9 3.9 50 160-210 139-190 (347)
499 KOG1014 17 beta-hydroxysteroid 76.9 9.3 0.0002 43.1 8.3 85 571-683 46-135 (312)
500 TIGR00036 dapB dihydrodipicoli 76.9 7.8 0.00017 43.0 7.8 118 179-302 2-129 (266)
No 1
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-224 Score=1907.83 Aligned_cols=814 Identities=61% Similarity=1.007 Sum_probs=790.9
Q ss_pred ccccccCCCCCChhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCcccc
Q 002073 143 VPIMTLGNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNF 222 (972)
Q Consensus 143 ~~~~~~~~~~~~~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qf 222 (972)
+++|..++.+..+|||++||||||++|+++|+||+.|+|||+||+|||.||||||+|+||+++||+|+..+.++||++||
T Consensus 2 ~~n~~~~~~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf 81 (1013)
T KOG2012|consen 2 SNNMMDGNSASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQF 81 (1013)
T ss_pred CCcccccCcchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccce
Confidence 34555566667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 223 VFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 223 fl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
|++++|||+|||+++.++|+|||+||.|.++++.+++++|++|+|||+|+.+++.+.+||++||+++ |.||.++++|+
T Consensus 82 ~L~E~DigknRA~as~~~LaeLN~yV~V~v~t~~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~--i~fi~ad~RGL 159 (1013)
T KOG2012|consen 82 YLSEEDIGKNRAEASVEKLAELNNYVPVVVLTGPLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHG--IAFIAADTRGL 159 (1013)
T ss_pred eeeHHhcCCchHHHHHHHHHHhhcceeeEEecCcccHHHHhCCcEEEEecCchHHHHHHHHHHHhcC--eEEEEeccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEEcCCceEEecCCCCCCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCceecccCcce
Q 002073 303 FGSVFCDFGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYS 382 (972)
Q Consensus 303 ~G~vf~dfg~~f~v~d~~ge~p~~~~I~~I~~~~~~lVt~~~~~rh~~~dgd~V~f~ev~gm~eln~~~~~~I~~~~~~~ 382 (972)
||++|||||++|+|.|++||+|.+++|++|++++||+|||+|+.||+|+|||+|+|+||+||++||+|+|++|++++||+
T Consensus 160 fg~lFCDFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~s 239 (1013)
T KOG2012|consen 160 FGQLFCDFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYS 239 (1013)
T ss_pred hhhhhccCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccceeecceEEEeecCeeecccchhhhhcCCCccccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCh
Q 002073 383 FTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSE 462 (972)
Q Consensus 383 f~i~~Dt~~f~~y~~gG~~~qvk~pk~i~fksL~e~l~~p~~~l~~d~~k~~r~~~lh~~~~aL~~F~~~~grlP~~~~~ 462 (972)
|+| +||+.|++|.+||+++|||+|++++||||+++|++| +++.+||+|++||++||++|+||++|+++|||+|+|+++
T Consensus 240 f~I-gdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e 317 (1013)
T KOG2012|consen 240 FSI-GDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNE 317 (1013)
T ss_pred EEe-ccccchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCCh
Confidence 999 589999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhhhHhhhhcCCccccceeeEeeeccCCC
Q 002073 463 EDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLP 542 (972)
Q Consensus 463 ~Da~~l~~la~~i~~~~~~~~~~~ide~lv~~~a~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~~yfD~~e~Lp 542 (972)
+|+++|++++..+.+..+ ..+++|+++|++|+++++|.|.||+|++||+|||||+|+|||||+||.||||||++||||
T Consensus 318 ~DA~~l~~l~~~i~~~~~--~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP 395 (1013)
T KOG2012|consen 318 EDAEELVELARDISEGLG--LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLP 395 (1013)
T ss_pred hhHHHHHHHHHHhhhhcc--ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCC
Confidence 999999999999988765 356899999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCCCCccCCccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCC
Q 002073 543 TE--PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNL 620 (972)
Q Consensus 543 ~~--~~~~~~~~~~~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNL 620 (972)
++ ++++++++|.++|||.||++||.++|+||.++++|+|||||||||+||||||||++||..|+|+|+|||.||+|||
T Consensus 396 ~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNL 475 (1013)
T KOG2012|consen 396 SDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNL 475 (1013)
T ss_pred CcCCCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccc
Confidence 75 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCcccccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcccc
Q 002073 621 SRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQK 700 (972)
Q Consensus 621 nRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~k 700 (972)
|||||||++||||+||++||+++..|||+++|++++.+++++||+||+|+||++.|+|+||+||++||+|||++|+.+.|
T Consensus 476 nRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~k 555 (1013)
T KOG2012|consen 476 NRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRK 555 (1013)
T ss_pred cceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEecccCCccceeEEEeCcccCccCCCCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhcccCChhhHhhhcCCchhh
Q 002073 701 PLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEY 780 (972)
Q Consensus 701 Pli~sgt~G~~G~~~viip~~t~~y~~~~dp~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~~~~l~~p~~~ 780 (972)
||+++||+|+||++||++||+||+|++++|||||++|+||+||||+.|||||+|||++||++|.++++++|+||++|..+
T Consensus 556 PLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f~ 635 (1013)
T KOG2012|consen 556 PLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVFY 635 (1013)
T ss_pred chhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hhhhhccCchhHHHHHHHHHHHhhhccccchHHHHHHHHHhhHHHHhHhHHhhhccCCccccccCCCccccccCCCCCCc
Q 002073 781 TTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPL 860 (972)
Q Consensus 781 ~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~ci~~a~~~f~~~f~~~i~~Ll~~fp~d~~~~~g~~fws~~kr~p~pl 860 (972)
...++..++.+.++.+++|.++|. .+|.+|+|||+|||++|+++|+++|+|||++||+|+.|++|+||||||||||+||
T Consensus 636 e~sl~~~~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl 714 (1013)
T KOG2012|consen 636 ETSLKLIGEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPL 714 (1013)
T ss_pred HHHHhhccCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCce
Confidence 777888888888999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHhhccCCCCccCCCCCeeecCccccccccCCCCcHHHHHH
Q 002073 861 QFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVIND 940 (972)
Q Consensus 861 ~fd~~~~~h~~fv~aaanL~a~~fgi~~~~~~~~~~~~~~~~~~~~~p~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 940 (972)
+||.+|++|+.||+|||||||.+|||++. .++++++.++..+++|+|+|+++++|.+++.+....+++.|+.+++.+
T Consensus 715 ~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~ 791 (1013)
T KOG2012|consen 715 EFDVNDPLHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQ 791 (1013)
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHH
Confidence 99999999999999999999999999985 778899999999999999999999999999877666667788889999
Q ss_pred HHHHhhhhccCCCCCCCcceeeeccccc
Q 002073 941 LIIKLEQCRKNLPSGFRLKPIQFEKVCI 968 (972)
Q Consensus 941 l~~~l~~~~~~~~~~~~~~p~~FeK~~~ 968 (972)
|..+|+.++. ..+++|.|++||||-.
T Consensus 792 l~~~l~~~~~--~~~~~~~p~~FEKDDD 817 (1013)
T KOG2012|consen 792 LNKALPSPSV--LPSFKMKPLDFEKDDD 817 (1013)
T ss_pred Hhhccccccc--CCCCceeeeeeccccc
Confidence 9999999988 6689999999999743
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=4.1e-185 Score=1701.16 Aligned_cols=808 Identities=53% Similarity=0.900 Sum_probs=774.8
Q ss_pred hhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHH
Q 002073 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (972)
Q Consensus 155 ~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RA 234 (972)
++|++||||||++||.++|+||++++|||+|+||||+||||||+|+|||+|||+|++.|+++||+||||++++|||++||
T Consensus 1 ~id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 1 EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred CchHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCce
Q 002073 235 LASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEF 314 (972)
Q Consensus 235 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~~f 314 (972)
++++++|++|||+|+|+++++.++++++++||+||+|.++.+.+.++|++||++++|||||++++.|++|++|+|||++|
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f 160 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEF 160 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCCHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred EEecCCCCCCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCceecccCcceeeeccccccccc
Q 002073 315 TVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGT 394 (972)
Q Consensus 315 ~v~d~~ge~p~~~~I~~I~~~~~~lVt~~~~~rh~~~dgd~V~f~ev~gm~eln~~~~~~I~~~~~~~f~i~~Dt~~f~~ 394 (972)
.+.|++|+.|.+++|.+|+++++++|+++++.+|++++||+|+|+||+||+++|+++|++|+++++|+|+| +||+.|++
T Consensus 161 ~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i-~dt~~~~~ 239 (1008)
T TIGR01408 161 EVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSI-GDTTELGP 239 (1008)
T ss_pred EEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEe-ccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 59999999
Q ss_pred eeecceEEEeecCeeecccchhhhhcCCCccccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q 002073 395 YVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATN 474 (972)
Q Consensus 395 y~~gG~~~qvk~pk~i~fksL~e~l~~p~~~l~~d~~k~~r~~~lh~~~~aL~~F~~~~grlP~~~~~~Da~~l~~la~~ 474 (972)
|.+||+++|||+|++++|+||+++|.+| +++++||+|++|++++|++|+||++|.++|||+|.+++++|++++++++++
T Consensus 240 y~~gG~~~qvK~p~~~~Fksl~~~l~~p-~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~ 318 (1008)
T TIGR01408 240 YLHGGIATQVKTPKTVFFKSLREQLKDP-KCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATS 318 (1008)
T ss_pred hhcCceEEEEeccccccccCHHHHHcCC-cccccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhhhHhhhhcCCccccceeeEeeeccCCCCC-CCCCCccCC
Q 002073 475 INESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE-PLDSTEFKP 553 (972)
Q Consensus 475 i~~~~~~~~~~~ide~lv~~~a~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~~yfD~~e~Lp~~-~~~~~~~~~ 553 (972)
++++.+.. .+++|+++++.|+++++++++||||++||++||||||+|||||+||+||||||++++||.. ++.++++.|
T Consensus 319 i~~~~~~~-~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~ 397 (1008)
T TIGR01408 319 ISETLEEK-VPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLP 397 (1008)
T ss_pred HHHhcCCC-cccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccc
Confidence 99876432 3569999999999999999999999999999999999999999999999999999999975 445567788
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccc
Q 002073 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (972)
Q Consensus 554 ~~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk 633 (972)
.++|||||+++||.++|++|+++||+||||||||||++||||++||+||++|+|+|+|+|+||.|||||||||+.+|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccce
Q 002073 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (972)
Q Consensus 634 ~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~ 713 (972)
+||++|+++++++||+++|+++..+++++++++|+++||+++|+||+|+||+++|.|++++|+.+++|||++|+.|++|+
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~ 557 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGN 557 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceee
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCcccCccCCCCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhcccCChhhHhhhcCCchhhhhhhhccCchhHH
Q 002073 714 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQAR 793 (972)
Q Consensus 714 ~~viip~~t~~y~~~~dp~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~ 793 (972)
+++++|++|+||.|+++|+++++|+||+++||+.++|||+|||++|+++|.+.|+++|+|+++|..|.+++.+....+.+
T Consensus 558 v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1008)
T TIGR01408 558 TQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSR 637 (1008)
T ss_pred EEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887777778
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHhhHHHHhHhHHhhhccCCccccccCCCccccccCCCCCCcccCCCCcchHHHH
Q 002073 794 DNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFV 873 (972)
Q Consensus 794 ~~l~~v~~~l~~~~~~~~~~ci~~a~~~f~~~f~~~i~~Ll~~fp~d~~~~~g~~fws~~kr~p~pl~fd~~~~~h~~fv 873 (972)
+.|+.+.+.|...+|.+|+|||+|||.+|+++|+++|+|||++||+|++|++|+||||||||+|+||+||++|++|++||
T Consensus 638 ~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi 717 (1008)
T TIGR01408 638 EGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFI 717 (1008)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCHHHHHHHhhccCCCCccCCCCCeeecCccccccccCCCCcHHHHHHHHHHhhhhccCCC
Q 002073 874 MAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLP 953 (972)
Q Consensus 874 ~aaanL~a~~fgi~~~~~~~~~~~~~~~~~~~~~p~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 953 (972)
+|||||||.+|||+.++.+.+++.++++++++.||+|+|++++||.++|++.+.+..+.++.+.+++|.++|++++. +
T Consensus 718 ~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~ 795 (1008)
T TIGR01408 718 QAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEA--T 795 (1008)
T ss_pred HHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhcccc--c
Confidence 99999999999999875556668999999999999999999999999997665443233457789999999998876 3
Q ss_pred CC-CCcceeeecccc
Q 002073 954 SG-FRLKPIQFEKVC 967 (972)
Q Consensus 954 ~~-~~~~p~~FeK~~ 967 (972)
.+ ++|+|++||||-
T Consensus 796 ~~~~~~~p~~FeKDD 810 (1008)
T TIGR01408 796 KSDFRMAPLSFEKDD 810 (1008)
T ss_pred cCCCCCCceeeccCC
Confidence 44 899999999964
No 3
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=2e-76 Score=644.90 Aligned_cols=285 Identities=58% Similarity=0.974 Sum_probs=280.4
Q ss_pred hhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHH
Q 002073 160 LHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQ 239 (972)
Q Consensus 160 ~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~ 239 (972)
+|||||++||.++|+||++++|||+|+||+|+|+||||+|+|||+|||+|++.|+++||+||||++++|||++||+++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeecCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEecC
Q 002073 240 KLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDV 319 (972)
Q Consensus 240 ~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~~f~v~d~ 319 (972)
+|++|||+|+|+++++.++++++.+||+||+|.++.+.+.++|++||+++ ||||.++++|++|++|+|||++|.|.|+
T Consensus 81 ~L~eLNp~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~--ipfI~a~~~G~~G~vf~dfg~~f~~~d~ 158 (286)
T cd01491 81 RLAELNPYVPVTVSTGPLTTDELLKFQVVVLTDASLEDQLKINEFCHSPG--IKFISADTRGLFGSIFCDFGDEFTVYDP 158 (286)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcC--CEEEEEeccccEEEEEecCCCeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCceecccCcceeeeccccccccceeecc
Q 002073 320 DGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGG 399 (972)
Q Consensus 320 ~ge~p~~~~I~~I~~~~~~lVt~~~~~rh~~~dgd~V~f~ev~gm~eln~~~~~~I~~~~~~~f~i~~Dt~~f~~y~~gG 399 (972)
+||+|.+++|.+|+++.+++|+++++.||+|+|||+|+|+||+||+++|+++|++|++++||+|+| +||+.|++|++||
T Consensus 159 ~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i-~d~~~~~~y~~gG 237 (286)
T cd01491 159 NGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSI-GDTSSFSEYIRGG 237 (286)
T ss_pred CCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEE-CcCcCcCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred eEEEeecCeeecccchhhhhcCCCccccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhhc
Q 002073 400 IVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESL 479 (972)
Q Consensus 400 ~~~qvk~pk~i~fksL~e~l~~p~~~l~~d~~k~~r~~~lh~~~~aL~~F~~~~grlP~~~~~~Da~~l~~la~~i~~~~ 479 (972)
+++|||
T Consensus 238 ~~~qvK-------------------------------------------------------------------------- 243 (286)
T cd01491 238 IVTQVK-------------------------------------------------------------------------- 243 (286)
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhhhHhhhhcCCccccceeeEeeeccCCCCC
Q 002073 480 GDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE 544 (972)
Q Consensus 480 ~~~~~~~ide~lv~~~a~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~~yfD~~e~Lp~~ 544 (972)
++||||++||++||||||+|||||+||+||||||++|+||..
T Consensus 244 -----------------------~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l~~~ 285 (286)
T cd01491 244 -----------------------LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECLPED 285 (286)
T ss_pred -----------------------cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhcCCC
Confidence 789999999999999999999999999999999999999963
No 4
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=3.6e-75 Score=663.51 Aligned_cols=275 Identities=63% Similarity=1.145 Sum_probs=261.6
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEee
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~ 656 (972)
||+||||||+|||++|+||++||+||++|+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEEEeCcccCccCCCCCCCCCCC
Q 002073 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 736 (972)
Q Consensus 657 ~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~viip~~t~~y~~~~dp~~~~~ 736 (972)
.+++++++++|+++||+++|+||+|+||+++|.+++++|+.+++|+|++|+.|++|++++++|+.|+||.|+.+|+++++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCChhhHHHHHHHHhhhcccCChhhHhhhcCCchhhhhhhhccCchhHHHHHHHHHHHhhhccccchHHHHH
Q 002073 737 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 816 (972)
Q Consensus 737 p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~ci~ 816 (972)
|+||+++||+.++|||+|||++|+++|.+.++++|+|+ |+||++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~------------------------------------~~~c~~ 204 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYL------------------------------------FEDCVR 204 (435)
T ss_pred CCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhh------------------------------------HHHHHH
Confidence 99999999999999999999999999999888776554 689999
Q ss_pred HHHHhhHHHHhHhHHhhhccCCccccccCCCccccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHcCCC
Q 002073 817 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIP 887 (972)
Q Consensus 817 ~a~~~f~~~f~~~i~~Ll~~fp~d~~~~~g~~fws~~kr~p~pl~fd~~~~~h~~fv~aaanL~a~~fgi~ 887 (972)
|||.+|+++|+++|+|||++||+|+++++|+|||||+||+|+|++||++|++|++||.++|+|||++|||+
T Consensus 205 ~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~ 275 (435)
T cd01490 205 WARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIP 275 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999887777776666555555554
No 5
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-58 Score=503.95 Aligned_cols=307 Identities=33% Similarity=0.563 Sum_probs=240.2
Q ss_pred HHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhC
Q 002073 568 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 647 (972)
Q Consensus 568 ~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~in 647 (972)
+.++++.+.||+||||||||||+||+||++|+ ++|+|||.|+|+.|||||||||+.+|||++||.||++.++++|
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf-----~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fn 79 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGF-----EEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFN 79 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcC-----CeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEEEeCcccCccCC
Q 002073 648 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGA 727 (972)
Q Consensus 648 P~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~viip~~t~~y~~ 727 (972)
|.+++.++...+... -|+..||++||+|+|||||.+||+|||++|...++|||+|||.|+.|++++++++.||||.|
T Consensus 80 pn~~l~~yhanI~e~---~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC 156 (603)
T KOG2013|consen 80 PNIKLVPYHANIKEP---KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYEC 156 (603)
T ss_pred CCCceEeccccccCc---chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecc
Confidence 999999999998753 36779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCChhhHHHHHHH-HhhhcccCChhhH-hhhc-CCchhhhhhhh-c-----cCchhHHHHHHH
Q 002073 728 SRDPPEKQAPMCTVHSFPHNIDHCLTWARS-EFEGLLEKTPAEV-NAYL-SNPVEYTTSMA-N-----AGDAQARDNLER 798 (972)
Q Consensus 728 ~~dp~~~~~p~Ctl~~fP~~~~h~i~wAr~-~F~~lF~~~~~~~-~~~l-~~p~~~~~~~~-~-----~~~~~~~~~l~~ 798 (972)
...|..+.+|.||+||.|+.++|||.|||+ +|.++|......- .... .+|..- +.+. + .+..+..+.-+.
T Consensus 157 ~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~-e~~t~~~~~~~~et~d~~Er~~~ 235 (603)
T KOG2013|consen 157 IPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNC-EDMTEEEAEAFRETEDLKERRES 235 (603)
T ss_pred cCCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhh-hccChhhhhhhccchHHHHHHHH
Confidence 999999999999999999999999999995 7999998643210 0001 123211 1110 0 000111111111
Q ss_pred HHHHhhhccccchHHHHHHHHHhhHHHHhHhHHhhhc--------cCCcc----------ccc------------cCCCc
Q 002073 799 VLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIF--------TFPED----------AAT------------STGAP 848 (972)
Q Consensus 799 v~~~l~~~~~~~~~~ci~~a~~~f~~~f~~~i~~Ll~--------~fp~d----------~~~------------~~g~~ 848 (972)
+.+. .+...|. -...|.++|..+|..|+. ++|.. ..| .+.+-
T Consensus 236 i~~~---~~~~~~~-----~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~ 307 (603)
T KOG2013|consen 236 IVEI---DKNLDFG-----PFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQN 307 (603)
T ss_pred HHHH---hhccCCC-----hhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcc
Confidence 1110 0111111 123577888888888875 34421 111 01234
Q ss_pred ccccc--------------CCCCC-----CcccCCCCcchHHHHHHHHHHHHHHcCCCCCCC
Q 002073 849 FWSAP--------------KRFPH-----PLQFSSADPSHLHFVMAASILRAETFGIPIPDW 891 (972)
Q Consensus 849 fws~~--------------kr~p~-----pl~fd~~~~~h~~fv~aaanL~a~~fgi~~~~~ 891 (972)
+|+-. -|+|+ -+.||+||...++||.+|||+||++||||..+.
T Consensus 308 v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~ 369 (603)
T KOG2013|consen 308 VWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSL 369 (603)
T ss_pred eeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhh
Confidence 67642 13332 389999999999999999999999999998643
No 6
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.3e-56 Score=494.84 Aligned_cols=250 Identities=38% Similarity=0.653 Sum_probs=230.8
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEee
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~ 656 (972)
||+||||||+|||++||||++|+ |+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEEEeCcccCccCCCCCCCCCCC
Q 002073 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 736 (972)
Q Consensus 657 ~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~viip~~t~~y~~~~dp~~~~~ 736 (972)
.++.+. .++.+||+++|+||+|+||.++|.+++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+++++++
T Consensus 76 ~~i~~~---~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~ 152 (312)
T cd01489 76 ANIKDP---DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTF 152 (312)
T ss_pred ccCCCc---cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcC
Confidence 988753 35578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCChhhHHHHHHHHhhhcccCChhhHhhhcCCchhhhhhhhccCchhHHHHHHHHHHHhhhccccchHHHHH
Q 002073 737 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 816 (972)
Q Consensus 737 p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~ci~ 816 (972)
|+||++++|+.++|||+|||++|+
T Consensus 153 pictI~~~p~~~~hci~~a~~~f~-------------------------------------------------------- 176 (312)
T cd01489 153 PVCTIRSTPSQPIHCIVWAKSLFF-------------------------------------------------------- 176 (312)
T ss_pred CcceecCCCCCCEeehhHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999886
Q ss_pred HHHHhhHHHHhHhHHhhhccCCccccccCCCccccccCCCCCC-----cccCCCCcchHHHHHHHHHHHHHHcCCCCCCC
Q 002073 817 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHP-----LQFSSADPSHLHFVMAASILRAETFGIPIPDW 891 (972)
Q Consensus 817 ~a~~~f~~~f~~~i~~Ll~~fp~d~~~~~g~~fws~~kr~p~p-----l~fd~~~~~h~~fv~aaanL~a~~fgi~~~~~ 891 (972)
.|+++|+++|+||+++ ++||+++| +|.| ++||+||++|++||+++|||||++|||+..
T Consensus 177 ----~~~~~f~~~i~~l~~~----------~~~w~~~~-~p~p~~~~~~~fdkDd~~~~~~v~~~a~lRa~~f~I~~~-- 239 (312)
T cd01489 177 ----LFNKVFKDDIERLLSM----------EELWKTRK-PPVPLSWKELTFDKDDQDALDFVAAAANLRSHVFGIPMK-- 239 (312)
T ss_pred ----HHHHHHHHHHHHHHhh----------hhhhcCCC-CCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 5788999999999976 68999988 8877 568899999999999999999999999974
Q ss_pred CCCHHHHHHHhhccCCCCc
Q 002073 892 TNNPKMLAEAVDKVMVPDF 910 (972)
Q Consensus 892 ~~~~~~~~~~~~~~~~p~f 910 (972)
+.-.++.+ .+-+||.-
T Consensus 240 --~~~~~k~i-~g~IiPai 255 (312)
T cd01489 240 --SRFDIKQM-AGNIIPAI 255 (312)
T ss_pred --CHHHHHHH-hccccchh
Confidence 34445444 45577753
No 7
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=3.6e-55 Score=501.96 Aligned_cols=368 Identities=25% Similarity=0.400 Sum_probs=282.8
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHH
Q 002073 159 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 238 (972)
Q Consensus 159 ~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~ 238 (972)
.|||||+|+||.++|++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+||++|||++++|||++||++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeecCCC------hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCC
Q 002073 239 QKLQELNNAVVLSTLTSKLT------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGP 312 (972)
Q Consensus 239 ~~L~eLNp~V~V~~~~~~l~------~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~ 312 (972)
++|++|||+|+++++.+.++ ++++++||+||+|.++...+..|+++||+++ ||||.+.+.|++|+++++++
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~--iPlI~~~s~G~~G~v~v~~~- 157 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSAN--IPLLYVRSYGLYGYIRIQLK- 157 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEecccCEEEEEEEEC-
Confidence 99999999999999987652 5789999999999999999999999999999 99999999999999999998
Q ss_pred ceEEecCCCCCCcceeecccccCCCceeecccccccccccC------CeeE--EEeeccccccC-CCCCceecccCccee
Q 002073 313 EFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDG------DLVV--FSEVHGMTELN-DGKPRKIKSARPYSF 383 (972)
Q Consensus 313 ~f~v~d~~ge~p~~~~I~~I~~~~~~lVt~~~~~rh~~~dg------d~V~--f~ev~gm~eln-~~~~~~I~~~~~~~f 383 (972)
+|+++|++++..... .++.++||++..+.+..+.+-.|. .|+. .+-.+.+..-+ +.-|..-+.+..|+-
T Consensus 158 ~h~i~et~p~~~~~D--LRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f~~ 235 (425)
T cd01493 158 EHTIVESHPDNALED--LRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRD 235 (425)
T ss_pred CeEEEECCCCCCCcC--cccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 688999998875544 578899999999887654322111 0111 11112222222 222221111222211
Q ss_pred ee------ccccccccceeecceEEEeecCeeecccchhhhhcCCCccccccCccCCCCChHHHHHHHHHHHHHH-hCCC
Q 002073 384 TL------EEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSE-LGRF 456 (972)
Q Consensus 384 ~i------~~Dt~~f~~y~~gG~~~qvk~pk~i~fksL~e~l~~p~~~l~~d~~k~~r~~~lh~~~~aL~~F~~~-~grl 456 (972)
.+ ..|.++|.+-... ..+-...+ .+ -.++++.++++.. .+.. ..+..+|++.+||.+|.++ +|.+
T Consensus 236 ~i~~~~~~~~~eeNf~EA~~~-~~~~~~~~-~i-~~~v~~~~~~~~~---~~~~--~~~~~fwi~~~alk~F~~~~~g~l 307 (425)
T cd01493 236 LVRSLMRSNEDEENFEEAIKA-VNKALNRT-KI-PSSVEEIFNDDRC---ENLT--SQSSSFWIMARALKEFVAEENGLL 307 (425)
T ss_pred HHHHhcccCCCccchHHHHHH-HHHhhCCC-CC-cHHHHHHHhchhc---ccCC--CCCchHHHHHHHHHHHHHhcCCCC
Confidence 00 1344555443221 01111111 11 1345555555521 1111 2345699999999999988 9999
Q ss_pred CCCCC----------------------hhhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHhhcc--------cccCch
Q 002073 457 PVAGS----------------------EEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGAR--------AVLNPM 506 (972)
Q Consensus 457 P~~~~----------------------~~Da~~l~~la~~i~~~~~~~~~~~ide~lv~~~a~~~~--------~el~Pv 506 (972)
|-++. ..|++++.+++.++....+.. .+.|+++.|+.||++++ .--||+
T Consensus 308 Pl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~-~~~I~~~~i~~FCkna~~l~~i~~~~~~~~~ 386 (425)
T cd01493 308 PLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRS-PDSISDKEIKLFCKNAAFLRVIRGRSLEHNI 386 (425)
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHhhHHhhhcccCCcccchH
Confidence 98774 678889999998888777642 46899999999999862 223999
Q ss_pred hhHhhhhhhhhHhhhhcCCccccceeeEeeeccC
Q 002073 507 AAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 540 (972)
Q Consensus 507 aA~iGGiaAQEVIKaiTgKf~PI~q~~yfD~~e~ 540 (972)
|||+||+|||||||++|+||+|++|+|+|||+.+
T Consensus 387 ~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 387 SAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred HHHHhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 9999999999999999999999999999999865
No 8
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-54 Score=459.80 Aligned_cols=314 Identities=34% Similarity=0.468 Sum_probs=265.6
Q ss_pred CChhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCch
Q 002073 153 QTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 232 (972)
Q Consensus 153 ~~~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~ 232 (972)
.++.+..+||||||+||.++|++|++|||||+|++|+|+||||||+|+||+++|+.|+..|+++|++.|||+..+++|++
T Consensus 6 lse~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~ 85 (331)
T KOG2014|consen 6 LSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQT 85 (331)
T ss_pred hhHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCC---ChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEE
Q 002073 233 RALASVQKLQELNNAVVLSTLTSKL---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 309 (972)
Q Consensus 233 RAea~~~~L~eLNp~V~V~~~~~~l---~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~d 309 (972)
||+++.++|++|||.|+|.+.++++ +++||.+||+||.+..+.++..++|++||+++ |+|+.++++|++|++|+|
T Consensus 86 raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~--i~F~a~d~~g~~Gy~F~d 163 (331)
T KOG2014|consen 86 RAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLN--IAFYAGDCFGLCGYAFAD 163 (331)
T ss_pred HHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcC--ceEEeccccceeeeeeee
Confidence 9999999999999999999999876 56899999999999999999999999999999 999999999999999999
Q ss_pred cCCceEEecCCCCCCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCceecccCcceeeecccc
Q 002073 310 FGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDT 389 (972)
Q Consensus 310 fg~~f~v~d~~ge~p~~~~I~~I~~~~~~lVt~~~~~rh~~~dgd~V~f~ev~gm~eln~~~~~~I~~~~~~~f~i~~Dt 389 (972)
+++ |.+.+.. ..+ ..++ ..+..++ |.
T Consensus 164 L~~-h~y~~~~---~~~---~~~~-----------------------------------~~k~~k~------------~~ 189 (331)
T KOG2014|consen 164 LQE-HKYLEEK---TKV---AKVS-----------------------------------QTKRAKV------------DE 189 (331)
T ss_pred hhh-hhhhhhc---ccc---cccc-----------------------------------cccceee------------ee
Confidence 986 4443210 000 0000 0000000 10
Q ss_pred ccccceeecceEEEeecCeeecccchhhhhcCCCccccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCChhhHHHHH
Q 002073 390 TNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLI 469 (972)
Q Consensus 390 ~~f~~y~~gG~~~qvk~pk~i~fksL~e~l~~p~~~l~~d~~k~~r~~~lh~~~~aL~~F~~~~grlP~~~~~~Da~~l~ 469 (972)
+ +.+-..+.+.|+|++|+|+.++. ...-.+..|...+|++++++..|.+.+||.|+.-..+|.+.++
T Consensus 190 ~-----------~~~~vk~~~~~~~~~Eal~~~~~--~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~ 256 (331)
T KOG2014|consen 190 T-----------ETEWVKRKVVFPSVKEALSVDWT--KKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERLL 256 (331)
T ss_pred c-----------cceehhhhhcccCHHHHHhcccc--hhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 0 01122367889999999997631 1122345678889999999999999999999977799999999
Q ss_pred HHHHHHHhhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhhhHhhhhcCCccccceeeEeeeccCC
Q 002073 470 SVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESL 541 (972)
Q Consensus 470 ~la~~i~~~~~~~~~~~ide~lv~~~a~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~~yfD~~e~L 541 (972)
.+.+++++.. .-+++.++ +|..+...+++|+||++||++||||||++|+|-.|++|+|||||+++.
T Consensus 257 ~I~~ell~s~-----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 257 QIRNELLESE-----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred HHHHhhcccc-----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 9999998743 23556667 888899999999999999999999999999999999999999999884
No 9
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-53 Score=467.02 Aligned_cols=376 Identities=26% Similarity=0.405 Sum_probs=292.1
Q ss_pred hHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHH
Q 002073 157 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 236 (972)
Q Consensus 157 d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea 236 (972)
...+||||+|+||.+||..|..++||++|++++|+|++|||||+|||++|++|...|..+|++.|||+..+++|++||++
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a 85 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEA 85 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeecCC------ChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 002073 237 SVQKLQELNNAVVLSTLTSKL------TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (972)
Q Consensus 237 ~~~~L~eLNp~V~V~~~~~~l------~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~df 310 (972)
+++.|+||||.|..+...+.. +++++++|++||.++.+.+...++.++||+++ ||++.+.++|+.|+++...
T Consensus 86 ~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~--vpll~~rs~Gl~G~iRI~i 163 (523)
T KOG2016|consen 86 TLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREAN--VPLLLTRSYGLAGTIRISI 163 (523)
T ss_pred HHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcC--CceEEEeeecceEEEEEEe
Confidence 999999999999999887753 45799999999999999999999999999999 9999999999999999999
Q ss_pred CCceEEecCCCCCCcceeecccccCCCceeecccccccccccC------CeeE--------------------------E
Q 002073 311 GPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDG------DLVV--------------------------F 358 (972)
Q Consensus 311 g~~f~v~d~~ge~p~~~~I~~I~~~~~~lVt~~~~~rh~~~dg------d~V~--------------------------f 358 (972)
.+ |++++.+++.|... .++.++||++...++..+....|- -|+. |
T Consensus 164 kE-H~iieshPD~~~~D--LRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk~f 240 (523)
T KOG2016|consen 164 KE-HTIIESHPDNPLDD--LRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKKEF 240 (523)
T ss_pred ee-ccccccCCCCcccc--cccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence 75 99999999998877 678889999888877654332111 0100 0
Q ss_pred Ee-ec-ccc----------------------------c-cCCC-------------------------------------
Q 002073 359 SE-VH-GMT----------------------------E-LNDG------------------------------------- 370 (972)
Q Consensus 359 ~e-v~-gm~----------------------------e-ln~~------------------------------------- 370 (972)
.+ +. +|. + +++.
T Consensus 241 kd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~Gtl 320 (523)
T KOG2016|consen 241 KDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRGTL 320 (523)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCCCC
Confidence 00 00 000 0 0000
Q ss_pred ------CCceecccCcceeeeccccccccceeecceEEEe-------e------------cCeeecccchhhhhcCCCc-
Q 002073 371 ------KPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQV-------K------------QPKVLNFKPLREALEDPGD- 424 (972)
Q Consensus 371 ------~~~~I~~~~~~~f~i~~Dt~~f~~y~~gG~~~qv-------k------------~pk~i~fksL~e~l~~p~~- 424 (972)
....|+.+..|.-+...|.-.+..+++. +.+++ . .-++++|+++++... |..
T Consensus 321 PDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~-vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~~ 398 (523)
T KOG2016|consen 321 PDMTSSTEHYIRLQKIYHEKAEADALEVERRVQE-VLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSIT 398 (523)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccch
Confidence 0011222222222211121111111110 01111 1 126778888888887 411
Q ss_pred --cccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCC-hhhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHhhccc
Q 002073 425 --FLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS-EEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARA 501 (972)
Q Consensus 425 --~l~~d~~k~~r~~~lh~~~~aL~~F~~~~grlP~~~~-~~Da~~l~~la~~i~~~~~~~~~~~ide~lv~~~a~~~~~ 501 (972)
...++.........+|+++||+++|..++|++|+... ++|+.++..++..+..+++... ..+.++++.||||++++
T Consensus 399 ~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~-~~v~d~~i~E~cR~gaa 477 (523)
T KOG2016|consen 399 ELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDG-NAVTDDAIHEICRFGAA 477 (523)
T ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCc-ccCcHHHHHHHHhcCCc
Confidence 1112222223456899999999999999999999432 7899999999999999887532 46889999999999999
Q ss_pred ccCchhhHhhhhhhhhHhhhhcCCccccceeeEeeeccC
Q 002073 502 VLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 540 (972)
Q Consensus 502 el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~~yfD~~e~ 540 (972)
|+|.|+|||||+|||||||++|+||+||+|+|+|||+..
T Consensus 478 ElH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~ 516 (523)
T KOG2016|consen 478 ELHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQ 516 (523)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhceecccceeEeccccc
Confidence 999999999999999999999999999999999999854
No 10
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.6e-51 Score=438.99 Aligned_cols=176 Identities=48% Similarity=0.833 Sum_probs=169.3
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEee
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~ 656 (972)
||+|||+||+|||++|+|+++|+ |+|+|+|+|+||.|||||||||+++||||+||++|+++++++||+++|+++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEEEeCcccCccCCCCCCCCCCC
Q 002073 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 736 (972)
Q Consensus 657 ~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~viip~~t~~y~~~~dp~~~~~ 736 (972)
.++.++ +.++++|++++|+||+|+||.++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++++
T Consensus 76 ~~i~~~--~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~ 153 (234)
T cd01484 76 NKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNF 153 (234)
T ss_pred ccCChh--hhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCC
Confidence 998753 346678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCChhhHHHHHHHHh
Q 002073 737 PMCTVHSFPHNIDHCLTWARSEF 759 (972)
Q Consensus 737 p~Ctl~~fP~~~~h~i~wAr~~F 759 (972)
|+||+++||+.++|||+||+++|
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~~ 176 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARMLQ 176 (234)
T ss_pred CccccCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999876
No 11
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=2.5e-48 Score=424.85 Aligned_cols=226 Identities=32% Similarity=0.622 Sum_probs=199.9
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEee
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~ 656 (972)
||+||||||+|||++|+|+++|+ |+|+|+|+|+||.|||||||||+.+|||++||++|+++++++||+++|+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcc--------ccceEecccCCccceeEEEeCcccCccCCC
Q 002073 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--------QKPLLESGTLGAKCNTQMVIPHLTENYGAS 728 (972)
Q Consensus 657 ~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~--------~kPli~sgt~G~~G~~~viip~~t~~y~~~ 728 (972)
.++.+ ++++|++++|+||+|+||+++|+++++.|... ++|+|++|+.|++|++++++|+.|+||.|.
T Consensus 76 ~~i~~-----~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~ 150 (291)
T cd01488 76 GKIQD-----KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECS 150 (291)
T ss_pred cccCc-----hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccC
Confidence 88874 34689999999999999999999999998764 499999999999999999999999999998
Q ss_pred CC--CCCCCCCCccccCCCCChhhHHHHHHHHhhhcccCChhhHhhhcCCchhhhhhhhccCchhHHHHHHHHHHHhhhc
Q 002073 729 RD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKE 806 (972)
Q Consensus 729 ~d--p~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~l~~v~~~l~~~ 806 (972)
.+ |+++++|+||++++|+.++|||+||+.+.
T Consensus 151 ~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~~----------------------------------------------- 183 (291)
T cd01488 151 LDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQ----------------------------------------------- 183 (291)
T ss_pred CCCCCCCCCCCcccccCCCCCcchheeeeeeee-----------------------------------------------
Confidence 76 77889999999999999999999998640
Q ss_pred cccchHHHHHHHHHhhHHHHhHhHHhhhccCCccccccCCCccccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHcCC
Q 002073 807 KCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGI 886 (972)
Q Consensus 807 ~~~~~~~ci~~a~~~f~~~f~~~i~~Ll~~fp~d~~~~~g~~fws~~kr~p~pl~fd~~~~~h~~fv~aaanL~a~~fgi 886 (972)
|... .|. .+||+||+.|++||+..|+.||+.|||
T Consensus 184 ----------~~~~-----------------------------------~~~-~~~~~d~~~~~~~i~~~a~~ra~~f~i 217 (291)
T cd01488 184 ----------WPKE-----------------------------------FPF-VPLDGDDPEHIEWLYQKALERAAQFNI 217 (291)
T ss_pred ----------cccc-----------------------------------cCC-CcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 0000 011 479999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHhhccCCCCc
Q 002073 887 PIPDWTNNPKMLAEAVDKVMVPDF 910 (972)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~p~f 910 (972)
++.+ ...+.. +.+-++|..
T Consensus 218 ~~~~----~~~~~~-v~~~iiPai 236 (291)
T cd01488 218 SGVT----YSLTQG-VVKRIIPAV 236 (291)
T ss_pred Cccc----HHHHhh-hHheeeCcc
Confidence 9853 334444 444467764
No 12
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-46 Score=396.09 Aligned_cols=181 Identities=33% Similarity=0.610 Sum_probs=170.7
Q ss_pred CHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHh
Q 002073 566 GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 645 (972)
Q Consensus 566 G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~ 645 (972)
+++..+.|.+.||+|+||||+|||++||||++|+ +.++|||||+||.|||||||||+++|||++||++||+.+++
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF-----~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~ 105 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGF-----RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR 105 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhcc-----ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh
Confidence 5677889999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcc---c-------cceEecccCCccceeE
Q 002073 646 INPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF---Q-------KPLLESGTLGAKCNTQ 715 (972)
Q Consensus 646 inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~---~-------kPli~sgt~G~~G~~~ 715 (972)
..|+..|.+|..++.. ++.+|+++||+||+++|+++||+++|.+.+.. + +|+|++||.|+||++.
T Consensus 106 Rvp~~~v~~h~~kIqd-----~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~ar 180 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQD-----KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHAR 180 (422)
T ss_pred hCCCcEEeeeecchhc-----CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeE
Confidence 9999999999999875 45689999999999999999999999987653 2 6999999999999999
Q ss_pred EEeCcccCccCCCCC--CCCCCCCCccccCCCCChhhHHHHHH
Q 002073 716 MVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWAR 756 (972)
Q Consensus 716 viip~~t~~y~~~~d--p~~~~~p~Ctl~~fP~~~~h~i~wAr 756 (972)
+|+|+.|.||.|+.| ||+.++|+||+.|.|..|||||+|++
T Consensus 181 vI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~ 223 (422)
T KOG2015|consen 181 VIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVK 223 (422)
T ss_pred EEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhh
Confidence 999999999999887 88889999999999999999999965
No 13
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=3.1e-38 Score=329.90 Aligned_cols=149 Identities=40% Similarity=0.675 Sum_probs=142.7
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHH
Q 002073 159 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 238 (972)
Q Consensus 159 ~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~ 238 (972)
++||||+++||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+||+|||+++++|+|++||++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeecCCC---hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEE
Q 002073 239 QKLQELNNAVVLSTLTSKLT---KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 309 (972)
Q Consensus 239 ~~L~eLNp~V~V~~~~~~l~---~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~d 309 (972)
++|+++||+++|+.+...++ ++++++||+||+|.++.+.+..+|++||+++ +|||.+++.|++|++|+|
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~d 153 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLG--VKFYATGVHGLFGFVFAD 153 (197)
T ss_pred HHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEecCCEEEEEEe
Confidence 99999999999999887664 3678999999999999999999999999999 999999999999998753
No 14
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=2.1e-37 Score=324.01 Aligned_cols=149 Identities=40% Similarity=0.627 Sum_probs=142.0
Q ss_pred hhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCc--CccCchHHHHH
Q 002073 160 LHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSD--NDIGKNRALAS 237 (972)
Q Consensus 160 ~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~--~DIGk~RAea~ 237 (972)
+||||+++||.++|++|++++|+|+|+||+|+|+||||+++||++|+|+|+|.|+.+|++||||+++ +|+|++||+++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHhcCCCEEEEeecCCC------hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 002073 238 VQKLQELNNAVVLSTLTSKLT------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (972)
Q Consensus 238 ~~~L~eLNp~V~V~~~~~~l~------~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~df 310 (972)
+++|+++||+|+|+++.+.++ ++++++||+||+|.++.+.+..+|++|++++ ||||.+++.|++|++|+|+
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~~~ 157 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH--IPFISCATYGLIGYAFFDF 157 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEEch
Confidence 999999999999999987663 3578999999999999999999999999999 9999999999999988654
No 15
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=2.3e-36 Score=317.19 Aligned_cols=176 Identities=28% Similarity=0.492 Sum_probs=161.4
Q ss_pred chhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccccc
Q 002073 557 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (972)
Q Consensus 557 RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~ 634 (972)
|||||+++ ||.+.|++|++++|+|||+||+||+++++|+++|+ |+|+|+|.|.||.+||+||+||+++|+|++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~ 75 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDHVDLSNLQRQILFTEEDVGRP 75 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCEEcccchhhhhccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCcccee
Q 002073 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 714 (972)
Q Consensus 635 Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~ 714 (972)
|+++++++++++||+++|+++...+.+++ + +++++++|+||+|+||.++|.++++.|+.+++|+|.+++.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~~~--~--~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~ 151 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTAEN--L--ELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQL 151 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCHHH--H--HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEE
Confidence 99999999999999999999998886532 1 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCc-ccCccCCCCCCCCCCCCCccc
Q 002073 715 QMVIPH-LTENYGASRDPPEKQAPMCTV 741 (972)
Q Consensus 715 ~viip~-~t~~y~~~~dp~~~~~p~Ctl 741 (972)
.++.|+ .++||.|......+..+.|..
T Consensus 152 ~~~~p~~~~~c~~c~~~~~~~~~~~~~~ 179 (202)
T TIGR02356 152 MVFDPGGEGPCLRCLFPDIADTGPSCAT 179 (202)
T ss_pred EEEeCCCCCCChhhcCCCCcccCCCCcc
Confidence 999998 799999954332333455643
No 16
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3.8e-36 Score=327.01 Aligned_cols=181 Identities=27% Similarity=0.378 Sum_probs=166.9
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccccc
Q 002073 555 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (972)
Q Consensus 555 ~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~ 634 (972)
.+||.||+.+||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|.||.||||||++|+.+|||++
T Consensus 7 ~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-----G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~ 81 (287)
T PRK08223 7 DEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-----GKFTIADFDVFELRNFNRQAGAMMSTLGRP 81 (287)
T ss_pred HHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-----CeEEEEeCCCcchhccccccCcChhHCCCc
Confidence 579999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCCh--HHHHHHhhhhhccccceEecccCCccc
Q 002073 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAKC 712 (972)
Q Consensus 635 Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~--~aR~~v~~~c~~~~kPli~sgt~G~~G 712 (972)
|+++++++++++||+++|+++...+++++. +++++++|+||||+||+ ++|.++++.|+.+++|+|++++.|+.|
T Consensus 82 Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~----~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~g 157 (287)
T PRK08223 82 KAEVLAEMVRDINPELEIRAFPEGIGKENA----DAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGT 157 (287)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccCccCH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeE
Confidence 999999999999999999999999987553 46789999999999996 899999999999999999999999999
Q ss_pred eeEEEeCcccCccCCC-CC---CCC---------CCCCCccccCCC
Q 002073 713 NTQMVIPHLTENYGAS-RD---PPE---------KQAPMCTVHSFP 745 (972)
Q Consensus 713 ~~~viip~~t~~y~~~-~d---p~~---------~~~p~Ctl~~fP 745 (972)
++.++.|+ ++||.|. +. ||+ ...|.|....+.
T Consensus 158 qv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 158 ALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred EEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 99999986 8999983 22 333 467888877766
No 17
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=2e-35 Score=315.77 Aligned_cols=164 Identities=35% Similarity=0.579 Sum_probs=156.3
Q ss_pred chhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccccc
Q 002073 557 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (972)
Q Consensus 557 RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~ 634 (972)
||+||+++ ||.+.|++|++++|+||||||+||+++++|+++|+ |+|+|+|+|.||.+||+||+||+++|||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 75 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDVVELSNLQRQILHTEADVGQP 75 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEEcCcccccccccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCcccee
Q 002073 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 714 (972)
Q Consensus 635 Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~ 714 (972)
|+++++++++++||+++|+++..+++.++ + .++++++|+||+|+||.++|.++++.|+.+++|+|.+|+.|..|++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i~~~~--~--~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERLDAEN--A--EELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEecceeCHHH--H--HHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999998886432 1 4678899999999999999999999999999999999999999999
Q ss_pred EEEeCcccCccCCCC
Q 002073 715 QMVIPHLTENYGASR 729 (972)
Q Consensus 715 ~viip~~t~~y~~~~ 729 (972)
.+++|+.++||.|..
T Consensus 152 ~~~~p~~~~c~~c~~ 166 (228)
T cd00757 152 TVFIPGEGPCYRCLF 166 (228)
T ss_pred EEECCCCCCCccccC
Confidence 999999999999953
No 18
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=3.7e-35 Score=316.55 Aligned_cols=166 Identities=32% Similarity=0.478 Sum_probs=156.6
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccc
Q 002073 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (972)
Q Consensus 555 ~~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVG 632 (972)
..||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|.||.|||+||+||+++|||
T Consensus 10 ~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG 84 (245)
T PRK05690 10 MLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDTVSLSNLQRQVLHDDATIG 84 (245)
T ss_pred HHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEECcchhhhhhcCChhhCC
Confidence 3799999987 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccc
Q 002073 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (972)
Q Consensus 633 k~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G 712 (972)
++|+++++++++++||+++|+++..++++++. +++++++|+||+|+||.++|.++++.|+.+++|++.+++.|+.|
T Consensus 85 ~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~----~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 160 (245)
T PRK05690 85 QPKVESARAALARINPHIAIETINARLDDDEL----AALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEG 160 (245)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCc
Confidence 99999999999999999999999998875321 46789999999999999999999999999999999999999999
Q ss_pred eeEEEeCcc-cCccCCCC
Q 002073 713 NTQMVIPHL-TENYGASR 729 (972)
Q Consensus 713 ~~~viip~~-t~~y~~~~ 729 (972)
++.++.|+. ++||.|..
T Consensus 161 ~v~~~~~~~~~~c~~c~~ 178 (245)
T PRK05690 161 QVTVFTYQDDEPCYRCLS 178 (245)
T ss_pred eEEEEecCCCCceeeecc
Confidence 999999875 79999953
No 19
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=5.5e-35 Score=334.68 Aligned_cols=178 Identities=26% Similarity=0.447 Sum_probs=163.9
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccc
Q 002073 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (972)
Q Consensus 555 ~~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVG 632 (972)
.+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.||||||+||+..|||
T Consensus 16 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~RQ~l~~~~dvG 90 (390)
T PRK07411 16 YERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQRQVIHGTSWVG 90 (390)
T ss_pred HHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCcCcccChHHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccc
Q 002073 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (972)
Q Consensus 633 k~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G 712 (972)
++|+++++++++++||+++|+++..++++++. .+++.++|+||+|+||.++|.++++.|+.+++|++.+++.|+.|
T Consensus 91 ~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g 166 (390)
T PRK07411 91 KPKIESAKNRILEINPYCQVDLYETRLSSENA----LDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEG 166 (390)
T ss_pred CcHHHHHHHHHHHHCCCCeEEEEecccCHHhH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence 99999999999999999999999999886432 46789999999999999999999999999999999999999999
Q ss_pred eeEEEeCcccCccCCCC-C-CCCCCCCCccc
Q 002073 713 NTQMVIPHLTENYGASR-D-PPEKQAPMCTV 741 (972)
Q Consensus 713 ~~~viip~~t~~y~~~~-d-p~~~~~p~Ctl 741 (972)
++.++.|+.++||.|.- . |+....|.|.-
T Consensus 167 ~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~~ 197 (390)
T PRK07411 167 QATVFNYEGGPNYRDLYPEPPPPGMVPSCAE 197 (390)
T ss_pred EEEEECCCCCCChHHhcCCCCCcccCCCCcc
Confidence 99988888899999953 3 33344566743
No 20
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-35 Score=311.75 Aligned_cols=164 Identities=30% Similarity=0.476 Sum_probs=156.2
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccc-c
Q 002073 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ-A 634 (972)
Q Consensus 556 ~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk-~ 634 (972)
+||+||+++||.++|++|++++|+||||||+||+++++|+++|+ |+|+|+|+|.||.|||+||++|+++|+|+ +
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCccChhhhccccccChhhcCchH
Confidence 69999999999999999999999999999999999999999999 99999999999999999999999999999 6
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCcccee
Q 002073 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 714 (972)
Q Consensus 635 Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~ 714 (972)
|+++++++++++||+++|+++...+++++ + +++++++|+||+|+||.++|..+++.|+.+++|+|.+++.|+.|++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~--~--~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEEN--I--DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHH--H--HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 99999999999999999999998876533 2 4578999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCccCCC
Q 002073 715 QMVIPHLTENYGAS 728 (972)
Q Consensus 715 ~viip~~t~~y~~~ 728 (972)
.+++|+.|+||.|.
T Consensus 159 ~~~~p~~~~c~~~~ 172 (231)
T PRK08328 159 TTIVPGKTKRLREI 172 (231)
T ss_pred EEECCCCCCCHHHh
Confidence 99999999999884
No 21
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=5.2e-33 Score=346.23 Aligned_cols=154 Identities=21% Similarity=0.329 Sum_probs=146.6
Q ss_pred hHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcC-----CEEEEEeCCccCccCCccccccCcCccCc
Q 002073 157 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGV-----KSVTLHDEGTVELWDLSSNFVFSDNDIGK 231 (972)
Q Consensus 157 d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGV-----g~itLvD~d~V~~~DL~~qffl~~~DIGk 231 (972)
..+|||||+++||.++|++|++++|+|+|+||+|+|++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 4689999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeecCCC--------hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeeccee
Q 002073 232 NRALASVQKLQELNNAVVLSTLTSKLT--------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 303 (972)
Q Consensus 232 ~RAea~~~~L~eLNp~V~V~~~~~~l~--------~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~ 303 (972)
+||++++++|+++||.++|+++...++ +++++++|+||.|.|+.+.+..+|+.|+.++ +|||.+++.|+.
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~--iPli~~gt~G~~ 555 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFL--KPLLESGTLGTK 555 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeccCce
Confidence 999999999999999999999987663 3578899999999999999999999999999 999999999999
Q ss_pred EEEEEEcCC
Q 002073 304 GSVFCDFGP 312 (972)
Q Consensus 304 G~vf~dfg~ 312 (972)
|++.+..+.
T Consensus 556 G~v~v~ip~ 564 (1008)
T TIGR01408 556 GNTQVVVPH 564 (1008)
T ss_pred eeEEEEeCC
Confidence 999887753
No 22
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.6e-34 Score=327.12 Aligned_cols=179 Identities=27% Similarity=0.398 Sum_probs=165.0
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccc
Q 002073 556 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (972)
Q Consensus 556 ~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk 633 (972)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.|||+|||||++.|||+
T Consensus 7 ~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 81 (355)
T PRK05597 7 ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVGQ 81 (355)
T ss_pred hHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccce
Q 002073 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (972)
Q Consensus 634 ~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~ 713 (972)
+|+++++++++++||+++|+++..++++++. .++++++|+||+|+||+.+|.++++.|+.+++|+|.+++.|+.|+
T Consensus 82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~----~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~ 157 (355)
T PRK05597 82 PKAESAREAMLALNPDVKVTVSVRRLTWSNA----LDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQ 157 (355)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEEeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEE
Confidence 9999999999999999999999998876432 467889999999999999999999999999999999999999999
Q ss_pred eEEEeCcccCccCCC-CC-CCCCCCCCccccC
Q 002073 714 TQMVIPHLTENYGAS-RD-PPEKQAPMCTVHS 743 (972)
Q Consensus 714 ~~viip~~t~~y~~~-~d-p~~~~~p~Ctl~~ 743 (972)
+.++.|+.++||.|. +. |+....|.|.-..
T Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g 189 (355)
T PRK05597 158 LSVFHAGHGPIYEDLFPTPPPPGSVPSCSQAG 189 (355)
T ss_pred EEEEcCCCCCCHHHhCCCCCCccCCCCccccC
Confidence 999999889999994 33 4445677785443
No 23
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=5.1e-34 Score=306.64 Aligned_cols=166 Identities=30% Similarity=0.445 Sum_probs=153.6
Q ss_pred cCchhhhhhhc--CHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccc
Q 002073 555 NSRYDAQISVF--GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (972)
Q Consensus 555 ~~RYdrqi~l~--G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVG 632 (972)
..||+||+++| |.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.||.|||+||+||++.|||
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~RQ~l~~~~diG 76 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTVSLSNLQRQVLHSDANIG 76 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcccccCcccceeeeHhhCC
Confidence 36999999995 6899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccc
Q 002073 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (972)
Q Consensus 633 k~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G 712 (972)
++|+++++++++++||+++|+++..++++++. .++++++|+||+|+||.++|.++++.|+.+++|++.++..|+.|
T Consensus 77 ~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~----~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 77 QPKVESAKDALTQINPHIAINPINAKLDDAEL----AALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 99999999999999999999999988875322 46789999999999999999999999999999999999999999
Q ss_pred eeEEEe-CcccCccCCCC
Q 002073 713 NTQMVI-PHLTENYGASR 729 (972)
Q Consensus 713 ~~~vii-p~~t~~y~~~~ 729 (972)
++.++. +..++||.|..
T Consensus 153 ~v~~~~~~~~~~c~~C~~ 170 (240)
T TIGR02355 153 QVSVFTYQDGEPCYRCLS 170 (240)
T ss_pred EEEEEecCCCCCcccccc
Confidence 988765 44578998864
No 24
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=6.9e-34 Score=297.19 Aligned_cols=152 Identities=24% Similarity=0.453 Sum_probs=144.7
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccH
Q 002073 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 635 (972)
Q Consensus 556 ~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~K 635 (972)
.|||||+++||.++|++|++++|+|||+||+|||++|+|+++|| |+|+|+|+|.||.|||+|||||+.+|+|++|
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ve~snL~rqfl~~~~diG~~K 76 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCcccHhhCCCCccccHHHcCchH
Confidence 59999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeE
Q 002073 636 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 715 (972)
Q Consensus 636 s~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~ 715 (972)
+++++++++++||+++|+++...+... +.+||+++|+||+|+|+.++|.++++.|+.+++|++.+++.|+.|++.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~~~-----~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDISEK-----PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccc-----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 999999999999999999999877632 357899999999999999999999999999999999999999999976
Q ss_pred EE
Q 002073 716 MV 717 (972)
Q Consensus 716 vi 717 (972)
..
T Consensus 152 ~d 153 (197)
T cd01492 152 AD 153 (197)
T ss_pred Ee
Confidence 53
No 25
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=1.2e-32 Score=315.79 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=147.2
Q ss_pred CChhhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccC
Q 002073 153 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (972)
Q Consensus 153 ~~~~d~~~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIG 230 (972)
.+..+.+||+||+++ ||.++|+||++++|+|+|+||+|+++|+||+++|||+|+|+|+|.|+.+||+|||+++++|||
T Consensus 15 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG 94 (392)
T PRK07878 15 LTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVG 94 (392)
T ss_pred CCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCC
Confidence 345566899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 002073 231 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (972)
Q Consensus 231 k~RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~v 306 (972)
++||++++++|+++||+|+|+++...++. +++++||+||+|.++...+..+|++|++++ +|||++++.|++|++
T Consensus 95 ~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~G~v 172 (392)
T PRK07878 95 RSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAG--KPYVWGSIYRFEGQA 172 (392)
T ss_pred ChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEE
Confidence 99999999999999999999999888865 578899999999999999999999999999 999999999999999
Q ss_pred EEE
Q 002073 307 FCD 309 (972)
Q Consensus 307 f~d 309 (972)
++.
T Consensus 173 ~~~ 175 (392)
T PRK07878 173 SVF 175 (392)
T ss_pred EEE
Confidence 853
No 26
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=6.1e-33 Score=306.89 Aligned_cols=277 Identities=19% Similarity=0.305 Sum_probs=210.3
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~~ 259 (972)
+|||+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||+++++|||++||++++++|+++||+|+|+++...+++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred -----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEec-CCCCCCcceeecccc
Q 002073 260 -----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVD-VDGEDPHTGIIASIS 333 (972)
Q Consensus 260 -----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~~f~v~d-~~ge~p~~~~I~~I~ 333 (972)
+++++||+||.|.++.+.+..+|++|+.++ +|||.+++.|++|++++++|..+.+++ ..+++|.+..+..|.
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~--ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~ 158 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAAD--VPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIR 158 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceec
Confidence 789999999999999999999999999999 999999999999999999998887777 678888888888888
Q ss_pred cCCCceeecccccccccccCCeeEEEeeccccccCCCCCceecccCcceeeeccccccccceeecceEEEeecCeeeccc
Q 002073 334 NDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFK 413 (972)
Q Consensus 334 ~~~~~lVt~~~~~rh~~~dgd~V~f~ev~gm~eln~~~~~~I~~~~~~~f~i~~Dt~~f~~y~~gG~~~qvk~pk~i~fk 413 (972)
+...+.++|++..++-|+ .|..+ |.-.| ..... ....++.-|.|..+.|.
T Consensus 159 ~~p~~~~hci~~a~~~f~-----~~~~~-------------------f~~~i----~~l~~--~~~~w~~~~~p~p~~~~ 208 (312)
T cd01489 159 STPSQPIHCIVWAKSLFF-----LFNKV-------------------FKDDI----ERLLS--MEELWKTRKPPVPLSWK 208 (312)
T ss_pred CCCCCCEeehhHHHHHHH-----HHHHH-------------------HHHHH----HHHHh--hhhhhcCCCCCCCCCCC
Confidence 777788888876554433 11000 00000 00000 00000001111111111
Q ss_pred chhhhhcCCCccccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCC-hhhHHHHHHHHHHHHhhcCCCCCCCCCHHHH
Q 002073 414 PLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS-EEDAQKLISVATNINESLGDGRVEDINTKLL 492 (972)
Q Consensus 414 sL~e~l~~p~~~l~~d~~k~~r~~~lh~~~~aL~~F~~~~grlP~~~~-~~Da~~l~~la~~i~~~~~~~~~~~ide~lv 492 (972)
. .+-..+ +++.+-+.+.++.....++ ....+...+
T Consensus 209 ~-----------------------------------------~~fdkDd~~~~~~v~~~a~lRa~~f~---I~~~~~~~~ 244 (312)
T cd01489 209 E-----------------------------------------LTFDKDDQDALDFVAAAANLRSHVFG---IPMKSRFDI 244 (312)
T ss_pred C-----------------------------------------cCcCCCCHHHHHHHHHHHHHHHHHcC---CCCCCHHHH
Confidence 0 000111 2333444444555555554 345677788
Q ss_pred HHHHhhcccccCchhhHhhhhhhhhHhhhhcCCcccccee
Q 002073 493 RHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQF 532 (972)
Q Consensus 493 ~~~a~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~ 532 (972)
+.++...-+.++.+.|+++|++..|++|.++++..-.++.
T Consensus 245 k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~ 284 (312)
T cd01489 245 KQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTV 284 (312)
T ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhH
Confidence 8999888889999999999999999999999986655554
No 27
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.7e-33 Score=319.72 Aligned_cols=176 Identities=27% Similarity=0.482 Sum_probs=160.1
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccc
Q 002073 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (972)
Q Consensus 555 ~~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVG 632 (972)
..||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|+ |+|+|+|.|.||.|||+||+||+++|||
T Consensus 19 ~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ve~sNL~RQ~l~~~~diG 93 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDTVDVSNIHRQILFGASDVG 93 (370)
T ss_pred HHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCEEccccccccccCChhHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccc
Q 002073 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (972)
Q Consensus 633 k~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G 712 (972)
++|+++++++++++||+++|+++..++++++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+.|
T Consensus 94 ~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G 169 (370)
T PRK05600 94 RPKVEVAAERLKEIQPDIRVNALRERLTAENA----VELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHG 169 (370)
T ss_pred CHHHHHHHHHHHHHCCCCeeEEeeeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence 99999999999999999999999999975432 46789999999999999999999999999999999999999999
Q ss_pred eeEEEeCcc---cCccCCC-CC-CCCCCCCCc
Q 002073 713 NTQMVIPHL---TENYGAS-RD-PPEKQAPMC 739 (972)
Q Consensus 713 ~~~viip~~---t~~y~~~-~d-p~~~~~p~C 739 (972)
++.++.|.. ++||.|. ++ |+....+.|
T Consensus 170 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c 201 (370)
T PRK05600 170 ELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDC 201 (370)
T ss_pred EEEEEecCCCCCCCCcHhhCCCCCccccCCCC
Confidence 999888753 6788884 33 333344556
No 28
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=2.8e-33 Score=321.14 Aligned_cols=176 Identities=27% Similarity=0.495 Sum_probs=160.5
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccc
Q 002073 556 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (972)
Q Consensus 556 ~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk 633 (972)
+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.|||+|||||+++|||+
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 95 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDVVDESNLQRQVIHGQSDVGR 95 (392)
T ss_pred HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecCcccccccccChhcCCC
Confidence 799999998 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccce
Q 002073 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (972)
Q Consensus 634 ~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~ 713 (972)
+|+++++++|+++||+++|+++..+++.++. .++++++|+||+|+||+.+|.++|+.|+.+++|+|.+++.|+.|+
T Consensus 96 ~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 96 SKAQSARDSIVEINPLVNVRLHEFRLDPSNA----VELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred hHHHHHHHHHHHhCCCcEEEEEeccCChhHH----HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999998875432 467899999999999999999999999999999999999999999
Q ss_pred eEEEeCc----ccCccCCC-CC-CCCCCCCCcc
Q 002073 714 TQMVIPH----LTENYGAS-RD-PPEKQAPMCT 740 (972)
Q Consensus 714 ~~viip~----~t~~y~~~-~d-p~~~~~p~Ct 740 (972)
+.++.+. .++||.|. +. |+...++.|.
T Consensus 172 v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~ 204 (392)
T PRK07878 172 ASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCA 204 (392)
T ss_pred EEEEecCCCCCCCCeeeeecCCCCCccCCCCCc
Confidence 9988743 68999994 22 3333456663
No 29
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=2.4e-33 Score=293.46 Aligned_cols=154 Identities=26% Similarity=0.448 Sum_probs=144.2
Q ss_pred chhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCccccccc--Cccccc
Q 002073 557 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD--WNIGQA 634 (972)
Q Consensus 557 RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~--~dVGk~ 634 (972)
|||||+++||.++|++|++++|+|||+||+|||++|||+++|| |+|+|+|+|.||.+||+|||+|++ .|+|++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~ 75 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN 75 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCcCChhcCcccEecccchhhcCch
Confidence 7999999999999999999999999999999999999999999 999999999999999999999998 899999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCcccee
Q 002073 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 714 (972)
Q Consensus 635 Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~ 714 (972)
|+++++++++++||+++|+++...+....+ ..++||+++|+||+|.|+..+|.+++++|+.+++|++.+++.|+.|++
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~--~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 153 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDS--NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchh--hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 999999999999999999999887752112 236789999999999999999999999999999999999999999998
Q ss_pred EEE
Q 002073 715 QMV 717 (972)
Q Consensus 715 ~vi 717 (972)
.+.
T Consensus 154 ~~~ 156 (198)
T cd01485 154 FFD 156 (198)
T ss_pred EEc
Confidence 754
No 30
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=5.5e-33 Score=312.31 Aligned_cols=166 Identities=30% Similarity=0.458 Sum_probs=156.3
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccc
Q 002073 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (972)
Q Consensus 555 ~~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVG 632 (972)
.+||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~ 76 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAK 76 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHcc
Confidence 3699999988 89999999999999999999999999999999999 9999999999999999999999999985
Q ss_pred --ccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCc
Q 002073 633 --QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 710 (972)
Q Consensus 633 --k~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~ 710 (972)
++|+++|+++++++||+++|+++...+++++ + +++++++|+||+|+||.++|..+++.|+.+++|+|.+++.|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~--~--~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~ 152 (338)
T PRK12475 77 QKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEE--L--EELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGS 152 (338)
T ss_pred CCccHHHHHHHHHHHHCCCcEEEEEeccCCHHH--H--HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 8999999999999999999999998876432 2 456889999999999999999999999999999999999999
Q ss_pred cceeEEEeCcccCccCCCC
Q 002073 711 KCNTQMVIPHLTENYGASR 729 (972)
Q Consensus 711 ~G~~~viip~~t~~y~~~~ 729 (972)
.|.+.+++|+.|+||.|..
T Consensus 153 ~G~~~~~~P~~tpC~~Cl~ 171 (338)
T PRK12475 153 YGVTYTIIPGKTPCLRCLM 171 (338)
T ss_pred EEEEEEECCCCCCCHHHhc
Confidence 9999999999999999964
No 31
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=5.1e-33 Score=304.09 Aligned_cols=182 Identities=21% Similarity=0.325 Sum_probs=164.1
Q ss_pred chhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHH
Q 002073 557 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS 636 (972)
Q Consensus 557 RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks 636 (972)
.||||+++||.+.|+||++++|+|||+||+|||+||||+++|| |+|+|+|.|.++.+||+|||+|+++|||++|+
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~ve~snL~rqf~~~~~dIGk~Ka 75 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRA 75 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCccchhhcccCccCChHHhCHHHH
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEE
Q 002073 637 TVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 716 (972)
Q Consensus 637 ~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~v 716 (972)
++++++|+++||+++|+++...++ .+++.++|+||+|.|+.++|..+|++|+..++|+|.+++.|+.|++.+
T Consensus 76 ea~~~~L~eLNp~V~V~~~~~~~~--------~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 76 EASQARLAELNPYVPVTVSTGPLT--------TDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC 147 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC--------HHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe
Confidence 999999999999999999986532 467889999999999999999999999999999999999999999887
Q ss_pred EeCcccCccCCC-CC-CCCCCCCCccccCCCCChhhHHHH
Q 002073 717 VIPHLTENYGAS-RD-PPEKQAPMCTVHSFPHNIDHCLTW 754 (972)
Q Consensus 717 iip~~t~~y~~~-~d-p~~~~~p~Ctl~~fP~~~~h~i~w 754 (972)
..+ +||.|. .+ ++.++++.|.+.+-|..+.||+.=
T Consensus 148 dfg---~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~ 184 (286)
T cd01491 148 DFG---DEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDE 184 (286)
T ss_pred cCC---CeEEEeCCCCCcCCccceeeeecCCceEEEEECC
Confidence 544 667664 11 234567888888878888888643
No 32
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.98 E-value=1.2e-32 Score=309.78 Aligned_cols=166 Identities=30% Similarity=0.426 Sum_probs=156.2
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccc
Q 002073 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (972)
Q Consensus 555 ~~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVG 632 (972)
++||+||+++ ||.++|++|++++|+||||||+||+++++|+++|+ |+|+|+|.|.||.|||+||+||+++|||
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig 76 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVK 76 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhc
Confidence 4799999988 99999999999999999999999999999999999 9999999999999999999999999995
Q ss_pred --ccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCc
Q 002073 633 --QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 710 (972)
Q Consensus 633 --k~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~ 710 (972)
++|+++++++++++||+++|+++..++++++. .++++++|+||+|+||.++|.++++.|+.+++|++.+++.|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~----~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 77 NNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL----EELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeee
Confidence 59999999999999999999999988875432 356889999999999999999999999999999999999999
Q ss_pred cceeEEEeCcccCccCCCC
Q 002073 711 KCNTQMVIPHLTENYGASR 729 (972)
Q Consensus 711 ~G~~~viip~~t~~y~~~~ 729 (972)
.|++.++.|+.++||.|.-
T Consensus 153 ~G~~~~~~p~~~pC~~Cl~ 171 (339)
T PRK07688 153 YGLSYTIIPGKTPCLRCLL 171 (339)
T ss_pred eeEEEEECCCCCCCeEeec
Confidence 9999999999999999943
No 33
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.98 E-value=6.9e-32 Score=310.10 Aligned_cols=186 Identities=23% Similarity=0.366 Sum_probs=167.7
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccH
Q 002073 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 635 (972)
Q Consensus 556 ~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~K 635 (972)
.|||||+++||.++|++|++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++.+||||+|
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~V~~sDL~~nFfl~~~diGk~k 75 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVDEEDLGNNFFLDASSLGKSR 75 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCcCchhhccccccCChhhcCcHH
Confidence 49999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeE
Q 002073 636 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 715 (972)
Q Consensus 636 s~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~ 715 (972)
|+++++.|+++||+++++.+...+..-.. .+.+||+++|+||.|.++...+..++++|+..++|+|.+++.|+.|+++
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll~--~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~ 153 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALLD--NDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIR 153 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhhh--hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEE
Confidence 99999999999999999999876643111 2368999999999999999999999999999999999999999999999
Q ss_pred EEeCcccCccCCCCCCCCCCCCCccccCCCCChhhH
Q 002073 716 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 751 (972)
Q Consensus 716 viip~~t~~y~~~~dp~~~~~p~Ctl~~fP~~~~h~ 751 (972)
+.+|..+ ... .+|+.....+...++||++.+|+
T Consensus 154 v~~~~h~-i~e--t~p~~~~~DLRL~~P~peL~~~~ 186 (425)
T cd01493 154 IQLKEHT-IVE--SHPDNALEDLRLDNPFPELREHA 186 (425)
T ss_pred EEECCeE-EEE--CCCCCCCcCcccCCCcHHHHHHH
Confidence 9998422 333 34555667889999999999865
No 34
>PRK08223 hypothetical protein; Validated
Probab=99.97 E-value=2.7e-31 Score=289.14 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=145.1
Q ss_pred hHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHH
Q 002073 157 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 236 (972)
Q Consensus 157 d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea 236 (972)
-+++|+||+.++|.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||++||++
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~ 85 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEV 85 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCH--HHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 002073 237 SVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISL--DKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (972)
Q Consensus 237 ~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~--~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~df 310 (972)
++++|+++||+++|+++...+++ ++++++|+||+|.|+. +++..+|+.|++++ ||||++.+.|+.|++.+-.
T Consensus 86 a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~--iP~V~~~~~g~~gqv~v~~ 163 (287)
T PRK08223 86 LAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG--IPALTAAPLGMGTALLVFD 163 (287)
T ss_pred HHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC--CCEEEEeccCCeEEEEEEc
Confidence 99999999999999999988865 5688999999999974 89999999999999 9999999999999987655
Q ss_pred C
Q 002073 311 G 311 (972)
Q Consensus 311 g 311 (972)
+
T Consensus 164 p 164 (287)
T PRK08223 164 P 164 (287)
T ss_pred C
Confidence 3
No 35
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.97 E-value=2.3e-31 Score=279.41 Aligned_cols=149 Identities=27% Similarity=0.430 Sum_probs=143.1
Q ss_pred hhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHH
Q 002073 160 LHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 237 (972)
Q Consensus 160 ~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~ 237 (972)
|||||+++ ||.++|+||++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++||+|||+++++|+|++||+++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 002073 238 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (972)
Q Consensus 238 ~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~df 310 (972)
+++|+++||+++++.+...+++ ++++++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|+++.-.
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~--ip~i~~~~~g~~G~~~~~~ 155 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALG--TPLISAAVVGFGGQLMVFD 155 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCeEEEEEEe
Confidence 9999999999999999888765 368899999999999999999999999999 9999999999999998644
No 36
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.97 E-value=4e-31 Score=285.31 Aligned_cols=153 Identities=22% Similarity=0.343 Sum_probs=145.5
Q ss_pred ChhhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCc
Q 002073 154 TDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 231 (972)
Q Consensus 154 ~~~d~~~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk 231 (972)
++.+.+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||+
T Consensus 6 ~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~ 85 (245)
T PRK05690 6 SDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQ 85 (245)
T ss_pred CHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCC
Confidence 45556899999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 002073 232 NRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (972)
Q Consensus 232 ~RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf 307 (972)
+||++++++|+++||+++|+++...+++ +++++||+||+|.++.+.+..+|++|++++ +|||.+.+.|+.|++.
T Consensus 86 ~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v~ 163 (245)
T PRK05690 86 PKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAK--KPLVSGAAIRMEGQVT 163 (245)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhC--CEEEEeeeccCCceEE
Confidence 9999999999999999999999988875 468899999999999999999999999999 9999999999999986
Q ss_pred E
Q 002073 308 C 308 (972)
Q Consensus 308 ~ 308 (972)
.
T Consensus 164 ~ 164 (245)
T PRK05690 164 V 164 (245)
T ss_pred E
Confidence 4
No 37
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=1.3e-31 Score=286.57 Aligned_cols=161 Identities=27% Similarity=0.409 Sum_probs=144.1
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccC---C-CCc-eEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhC
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSC---G-NQG-KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 647 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~---~-~~g-~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~in 647 (972)
-+..+|+||||||+||+++++||++|+++ | +.| +|+|+|+|+||.|||||| +|.+.|||++||++++++++.++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 36889999999999999999999998644 2 123 999999999999999999 67889999999999999999998
Q ss_pred CCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhc--c-ccceEeccc--------CCc-----c
Q 002073 648 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--F-QKPLLESGT--------LGA-----K 711 (972)
Q Consensus 648 P~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~--~-~kPli~sgt--------~G~-----~ 711 (972)
+++|+++..++.++ .++.++|+||+|+||+++|.++++.|.+ + .+||+++|+ .|. +
T Consensus 88 -~~~i~a~~~~~~~~-------~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k 159 (244)
T TIGR03736 88 -GTDWTAHPERVERS-------STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAK 159 (244)
T ss_pred -CceEEEEEeeeCch-------hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccc
Confidence 89999999988762 2356899999999999999999999988 3 489999999 777 8
Q ss_pred ceeEEEeCcccCccCCCCCC---CCCCCCCcccc
Q 002073 712 CNTQMVIPHLTENYGASRDP---PEKQAPMCTVH 742 (972)
Q Consensus 712 G~~~viip~~t~~y~~~~dp---~~~~~p~Ctl~ 742 (972)
|++++++|++|++|.|..|| ++++.|+||+.
T Consensus 160 ~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla 193 (244)
T TIGR03736 160 GENRLRLPHVGELFPELIDPSVDPDDDRPSCSLA 193 (244)
T ss_pred cCCceecCCchhhCcccccCccCCCCCCCCchHH
Confidence 99999999999999999988 78899999984
No 38
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.97 E-value=5.3e-31 Score=281.67 Aligned_cols=149 Identities=26% Similarity=0.406 Sum_probs=142.8
Q ss_pred hhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHH
Q 002073 160 LHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 237 (972)
Q Consensus 160 ~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~ 237 (972)
|||||+++ ||.++|++|++++|+|+|+||+|+++|+||+++|||+++|+|+|.|+++||+||||++++|+|++||+++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 002073 238 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (972)
Q Consensus 238 ~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~df 310 (972)
+++|+++||+++|+.+...+++ ++++++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|++....
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~--ip~i~~g~~g~~g~v~~~~ 155 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLG--KPLVSGAVLGFEGQVTVFI 155 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEEEEEC
Confidence 9999999999999999888754 467889999999999999999999999999 9999999999999987644
No 39
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=3.5e-31 Score=302.73 Aligned_cols=177 Identities=29% Similarity=0.542 Sum_probs=161.0
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccc
Q 002073 556 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (972)
Q Consensus 556 ~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk 633 (972)
.||+||+.+ ||.+.|++|++++|+|||+||+||+++++|+++|+ |+|+|+|+|.||.|||+||+||++.|||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEecchhhccccccchhhCCC
Confidence 799999998 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccce
Q 002073 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (972)
Q Consensus 634 ~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~ 713 (972)
+|+++++++++++||+++|+++...+.+++. .++++++|+||+|+||.++|.++++.|+.+++|+|.+++.|+.|+
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNV----EALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999888765322 356789999999999999999999999999999999999999999
Q ss_pred eEEEeCcc----cCccCCCC-C-CCCCCCCCccc
Q 002073 714 TQMVIPHL----TENYGASR-D-PPEKQAPMCTV 741 (972)
Q Consensus 714 ~~viip~~----t~~y~~~~-d-p~~~~~p~Ctl 741 (972)
+.++.|+. ++||.|.- . |+....|.|..
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 298 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAE 298 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCcc
Confidence 99999876 89999952 2 33233466644
No 40
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=3.4e-31 Score=287.44 Aligned_cols=167 Identities=36% Similarity=0.599 Sum_probs=157.1
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccc
Q 002073 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (972)
Q Consensus 555 ~~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVG 632 (972)
..||+||+.+ +|.++|++|+++||+|||+||+||+++++|+++|+ |+++|+|.|+|+.|||+||++|++.|||
T Consensus 8 ~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGv-----g~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 8 IERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGV-----GKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred HHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCC-----CeEEEEcCCcccccccCceeeecccccC
Confidence 3799999999 45555999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccc
Q 002073 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (972)
Q Consensus 633 k~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G 712 (972)
++|++++++.+.++||.++++++...++.++. ..+++++|+|++|+||+++|..+|+.|+..++|++++++.|+.|
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~----~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g 158 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEG 158 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhH----HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceE
Confidence 99999999999999999999999999886553 47789999999999999999999999999999999999999999
Q ss_pred eeEEEeCc-ccCccCCCCC
Q 002073 713 NTQMVIPH-LTENYGASRD 730 (972)
Q Consensus 713 ~~~viip~-~t~~y~~~~d 730 (972)
++.++.|. .++||.|.-+
T Consensus 159 ~~~~~~~~~~~~c~~~~~~ 177 (254)
T COG0476 159 QVTVIIPGDKTPCYRCLFP 177 (254)
T ss_pred EEEEEecCCCCCcccccCC
Confidence 99999999 5999999543
No 41
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=1.1e-30 Score=295.92 Aligned_cols=152 Identities=23% Similarity=0.305 Sum_probs=146.7
Q ss_pred hhhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCch
Q 002073 155 DIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 232 (972)
Q Consensus 155 ~~d~~~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~ 232 (972)
+++.+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++
T Consensus 3 ~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 82 (355)
T PRK05597 3 NLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP 82 (355)
T ss_pred hHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCCh
Confidence 5677899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 002073 233 RALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (972)
Q Consensus 233 RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~ 308 (972)
||++++++|+++||+|+|+++...+++ +++++||+||+|.++.+.+..+|++|++++ +|||++.+.|+.|++.+
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~--ip~v~~~~~g~~g~v~~ 160 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLG--IPHVWASILGFDAQLSV 160 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCeEEEEE
Confidence 999999999999999999999888874 578999999999999999999999999999 99999999999999985
No 42
>PRK07411 hypothetical protein; Validated
Probab=99.97 E-value=2e-30 Score=297.09 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=148.1
Q ss_pred CChhhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccC
Q 002073 153 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (972)
Q Consensus 153 ~~~~d~~~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIG 230 (972)
.++.+.+||+||+++ ||.++|+||++++|+|+|+||+|+++|+||+++|||+|+|+|+|.|+.+||+|||+++++|||
T Consensus 11 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG 90 (390)
T PRK07411 11 LSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVG 90 (390)
T ss_pred CCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCC
Confidence 346667899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 002073 231 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (972)
Q Consensus 231 k~RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~v 306 (972)
++||++++++|+++||+|+|+++...+++ +++.+||+||+|.++.+.+..+|++|++.+ +|+|++.+.|++|++
T Consensus 91 ~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~g~~ 168 (390)
T PRK07411 91 KPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLN--KPNVYGSIFRFEGQA 168 (390)
T ss_pred CcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEccCEEEE
Confidence 99999999999999999999999988865 468899999999999999999999999999 999999999999998
Q ss_pred EEE
Q 002073 307 FCD 309 (972)
Q Consensus 307 f~d 309 (972)
.+-
T Consensus 169 ~v~ 171 (390)
T PRK07411 169 TVF 171 (390)
T ss_pred EEE
Confidence 765
No 43
>PRK08328 hypothetical protein; Provisional
Probab=99.97 E-value=3.3e-30 Score=275.90 Aligned_cols=155 Identities=27% Similarity=0.454 Sum_probs=145.9
Q ss_pred ChhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCc-h
Q 002073 154 TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK-N 232 (972)
Q Consensus 154 ~~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk-~ 232 (972)
++.+.+||+||+++||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|+ +
T Consensus 3 ~~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 3 SERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred CHHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchH
Confidence 345568999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 002073 233 RALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (972)
Q Consensus 233 RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~ 308 (972)
|+++++++|+++||+++|+++...+++ ++++++|+||+|.++.+.+..++++|++++ +|||.+++.|++|+++.
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~--ip~i~g~~~g~~G~v~~ 160 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKG--IPLVHGAVEGTYGQVTT 160 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeeccCEEEEEE
Confidence 999999999999999999999887765 368899999999999999999999999999 99999999999999986
Q ss_pred Ec
Q 002073 309 DF 310 (972)
Q Consensus 309 df 310 (972)
-.
T Consensus 161 ~~ 162 (231)
T PRK08328 161 IV 162 (231)
T ss_pred EC
Confidence 54
No 44
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=1.5e-29 Score=277.21 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=196.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCC-
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 258 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~- 258 (972)
+|||+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||.++|+++...++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred --hhhhcCCceEEEcCCCHHHHHHHHHHHHhcC------CCceeEEeeecceeEEEEEEcCCceEEecCCCC-CCcceee
Q 002073 259 --KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ------PAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGE-DPHTGII 329 (972)
Q Consensus 259 --~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~------~~IpfI~a~~~G~~G~vf~dfg~~f~v~d~~ge-~p~~~~I 329 (972)
++++++||+||++.|+.+.+..+|+.|.+.. ..+|||.+++.|+.|++.+..+....+++-.-+ .|.
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~---- 156 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPP---- 156 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCC----
Confidence 4789999999999999999999999875431 129999999999999998877532111110000 000
Q ss_pred cccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCceecccCcceeeeccccccccceeecceEEEeecCee
Q 002073 330 ASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKV 409 (972)
Q Consensus 330 ~~I~~~~~~lVt~~~~~rh~~~dgd~V~f~ev~gm~eln~~~~~~I~~~~~~~f~i~~Dt~~f~~y~~gG~~~qvk~pk~ 409 (972)
....+++....+.-.. +..- .| . +.
T Consensus 157 ----------------------------------------~~~~p~Cti~~~P~~~-~hci---~~-----a------~~ 181 (291)
T cd01488 157 ----------------------------------------QVTFPLCTIANTPRLP-EHCI---EY-----A------SL 181 (291)
T ss_pred ----------------------------------------CCCCCcccccCCCCCc-chhe---ee-----e------ee
Confidence 0000011000000000 0000 00 0 11
Q ss_pred ecccchhhhhcCCCccccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCCH
Q 002073 410 LNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINT 489 (972)
Q Consensus 410 i~fksL~e~l~~p~~~l~~d~~k~~r~~~lh~~~~aL~~F~~~~grlP~~~~~~Da~~l~~la~~i~~~~~~~~~~~ide 489 (972)
+.|. + ++ .+.--...+.++.+.+.+.|++..++++ .+.++-
T Consensus 182 ~~~~------------------~-~~-----------------~~~~~~~d~~~~~~~i~~~a~~ra~~f~---i~~~~~ 222 (291)
T cd01488 182 IQWP------------------K-EF-----------------PFVPLDGDDPEHIEWLYQKALERAAQFN---ISGVTY 222 (291)
T ss_pred eecc------------------c-cc-----------------CCCcCCCCCHHHHHHHHHHHHHHHHHcC---CCcccH
Confidence 1111 0 00 0111122346677777888888877775 345777
Q ss_pred HHHHHHHhhcccccCchhhHhhhhhhhhHhhhhcCCccccceeeEeeeccCCC
Q 002073 490 KLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLP 542 (972)
Q Consensus 490 ~lv~~~a~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~~yfD~~e~Lp 542 (972)
.+++.++...-+.++.+.|+|||..+-|++|.+|+...+++||+.|.|-+++-
T Consensus 223 ~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~ 275 (291)
T cd01488 223 SLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCY 275 (291)
T ss_pred HHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceE
Confidence 88999999999999999999999999999999999999999999999987754
No 45
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=314.29 Aligned_cols=167 Identities=26% Similarity=0.389 Sum_probs=156.1
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccc
Q 002073 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (972)
Q Consensus 554 ~~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk 633 (972)
..+||+||+.+||.+.|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|+||.||||||++|+.+|||+
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV-----G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGI-----GRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCC-----CeEEEEcCCEecccccccCcCcChhhCCC
Confidence 3489999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCC--hHHHHHHhhhhhccccceEecccCCcc
Q 002073 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDN--VNARLYVDQRCLYFQKPLLESGTLGAK 711 (972)
Q Consensus 634 ~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn--~~aR~~v~~~c~~~~kPli~sgt~G~~ 711 (972)
+|+++++++++++||+++|+++...+++++. ++|++++|+||+|+|| .++|.++++.|+.+++|+|.+|+.|+.
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~----~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~ 172 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNM----DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYS 172 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccccc
Confidence 9999999999999999999999999986432 5788999999999997 578999999999999999999999999
Q ss_pred ceeEEEeCcccCccCCCCC
Q 002073 712 CNTQMVIPHLTENYGASRD 730 (972)
Q Consensus 712 G~~~viip~~t~~y~~~~d 730 (972)
|++.++.|+ +.||.|.-+
T Consensus 173 g~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 173 SAMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred ceEEEEcCC-CCCHhHhcc
Confidence 999999997 677776433
No 46
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.97 E-value=3.6e-30 Score=276.85 Aligned_cols=147 Identities=23% Similarity=0.361 Sum_probs=141.0
Q ss_pred hhhhhhhhcc--CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHH
Q 002073 159 DLHSRQLAVY--GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 236 (972)
Q Consensus 159 ~~YsRQi~l~--G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea 236 (972)
+||+||+++| |.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||++++++|||++||++
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~ 82 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVES 82 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHH
Confidence 6899999997 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 002073 237 SVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (972)
Q Consensus 237 ~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf 307 (972)
++++|+++||+++|+++...+++ ++++++|+||+|.++.+.+..+|++|++++ +|||.+.+.|+.|++.
T Consensus 83 a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v~ 155 (240)
T TIGR02355 83 AKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAK--VPLVSGAAIRMEGQVS 155 (240)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEeEEE
Confidence 99999999999999999988875 467899999999999999999999999999 9999999999999875
No 47
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.96 E-value=1e-29 Score=288.97 Aligned_cols=155 Identities=25% Similarity=0.380 Sum_probs=147.6
Q ss_pred CChhhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccC
Q 002073 153 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (972)
Q Consensus 153 ~~~~d~~~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIG 230 (972)
.++.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|||+++++|||
T Consensus 14 ~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG 93 (370)
T PRK05600 14 LPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVG 93 (370)
T ss_pred CCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCC
Confidence 345666899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 002073 231 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (972)
Q Consensus 231 k~RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~v 306 (972)
++||++++++|+++||+|+|+++...+++ ++++++|+||+|.++.+.+..+|++|++++ +|||++.+.|+.|++
T Consensus 94 ~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~--iP~v~~~~~g~~G~v 171 (370)
T PRK05600 94 RPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITG--TPLVWGTVLRFHGEL 171 (370)
T ss_pred CHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCEEEE
Confidence 99999999999999999999999988875 478899999999999999999999999999 999999999999999
Q ss_pred EEE
Q 002073 307 FCD 309 (972)
Q Consensus 307 f~d 309 (972)
.+-
T Consensus 172 ~v~ 174 (370)
T PRK05600 172 AVF 174 (370)
T ss_pred EEE
Confidence 753
No 48
>PRK14852 hypothetical protein; Provisional
Probab=99.96 E-value=4e-30 Score=313.40 Aligned_cols=165 Identities=25% Similarity=0.419 Sum_probs=155.1
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccc
Q 002073 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (972)
Q Consensus 554 ~~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk 633 (972)
...||+||+.+||.+.|+||++++|+|||+||+||+++++||++|| |+|+|+|+|.||.||||||++|+.+|||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGV-----G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGI-----GNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEecccccccccCCChhhCCC
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCCh--HHHHHHhhhhhccccceEecccCCcc
Q 002073 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAK 711 (972)
Q Consensus 634 ~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~--~aR~~v~~~c~~~~kPli~sgt~G~~ 711 (972)
+|+++++++++++||.++|+++...+++++. ++|++++|+||+|+|++ ++|.+++..|+.+++|+|.+|+.|++
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~----~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETI----DAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHH----HHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 9999999999999999999999999976543 57899999999999984 67889999999999999999999999
Q ss_pred ceeEEEeCcccCccCCC
Q 002073 712 CNTQMVIPHLTENYGAS 728 (972)
Q Consensus 712 G~~~viip~~t~~y~~~ 728 (972)
|++.++.|+. .||.|.
T Consensus 462 g~v~v~~p~~-~~~~~~ 477 (989)
T PRK14852 462 CALLVFMPGG-MNFDSY 477 (989)
T ss_pred eeEEEEcCCC-CCHHHh
Confidence 9999998874 788874
No 49
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.96 E-value=9.6e-31 Score=281.33 Aligned_cols=171 Identities=28% Similarity=0.443 Sum_probs=159.4
Q ss_pred CCCCCccCCccCchhhhhhh--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCc
Q 002073 545 PLDSTEFKPINSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSR 622 (972)
Q Consensus 545 ~~~~~~~~~~~~RYdrqi~l--~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnR 622 (972)
.++.+++ .||+||+.+ ||..+|.+|++++|+||||||+||..+..|+.+|+ |+|-|+|.|.||.|||.|
T Consensus 38 ~Ls~dei----~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGv-----G~lGiVD~DvVe~sNlhR 108 (427)
T KOG2017|consen 38 GLSLDEI----LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGV-----GRLGIVDYDVVELSNLHR 108 (427)
T ss_pred CCCHHHH----HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCC-----CeecccccceeehhhHHH
Confidence 4455554 799999998 99999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccCcccccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccce
Q 002073 623 QFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPL 702 (972)
Q Consensus 623 QfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPl 702 (972)
|.++++..+|+.|++.|+..++++||+++|..|.+.+++.+. .+.+++||+|+||+||+.+|+.+++.|+..++|+
T Consensus 109 QVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa----~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpL 184 (427)
T KOG2017|consen 109 QVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNA----FDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPL 184 (427)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhH----HHHhhccceEEEcCCCccchhhhhhHHHHcCCcc
Confidence 999999999999999999999999999999999999988664 2567999999999999999999999999999999
Q ss_pred EecccCCccceeEEEeCcccCccCCC
Q 002073 703 LESGTLGAKCNTQMVIPHLTENYGAS 728 (972)
Q Consensus 703 i~sgt~G~~G~~~viip~~t~~y~~~ 728 (972)
+.+..+++.|+..++--.-.+||.|.
T Consensus 185 VSgSaLr~EGQLtvYny~~GPCYRCl 210 (427)
T KOG2017|consen 185 VSGSALRWEGQLTVYNYNNGPCYRCL 210 (427)
T ss_pred cccccccccceeEEeecCCCceeeec
Confidence 99999999999877755678999993
No 50
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=1.9e-29 Score=273.73 Aligned_cols=165 Identities=25% Similarity=0.409 Sum_probs=148.0
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccccc
Q 002073 555 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (972)
Q Consensus 555 ~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~ 634 (972)
..||+||.++||.+.|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|.|+.||||||+++..+|||++
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~ 84 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDDVCVTNTNRQIHALRDNVGLA 84 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCEecccccccccccChhhcChH
Confidence 369999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccce-
Q 002073 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN- 713 (972)
Q Consensus 635 Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~- 713 (972)
|++++++++.++||+++|+++...+++++.. ..+..++|+||+|+|++.++..++++|..+++|+|.+|..|.+..
T Consensus 85 Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~---~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVVDDFITPDNVA---EYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEEecccChhhHH---HHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 9999999999999999999998887754431 222357999999999999999999999999999999988887776
Q ss_pred eEEEeCcccCccCC
Q 002073 714 TQMVIPHLTENYGA 727 (972)
Q Consensus 714 ~~viip~~t~~y~~ 727 (972)
+++.+-.+...+.|
T Consensus 162 ~~~~~~di~~t~~~ 175 (268)
T PRK15116 162 TQIQVVDLAKTIQD 175 (268)
T ss_pred CeEEEEeeecccCC
Confidence 55667666666654
No 51
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.96 E-value=3.3e-28 Score=273.85 Aligned_cols=151 Identities=23% Similarity=0.370 Sum_probs=142.9
Q ss_pred Hhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccC--chH
Q 002073 158 EDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG--KNR 233 (972)
Q Consensus 158 ~~~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIG--k~R 233 (972)
++|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+++||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 3799999988 999999999999999999999999999999999999999999999999999999999999995 599
Q ss_pred HHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEE
Q 002073 234 ALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 309 (972)
Q Consensus 234 Aea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~d 309 (972)
|++++++|+++||+|+|+++...+++ ++++++|+||+|.++.+.+..+|++|++++ +|||++++.|++|+++..
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~--iP~i~~~~~g~~G~~~~~ 159 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYG--IPWIYGACVGSYGLSYTI 159 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeeeeeeeEEEEE
Confidence 99999999999999999999888865 468899999999999999999999999999 999999999999997654
Q ss_pred c
Q 002073 310 F 310 (972)
Q Consensus 310 f 310 (972)
.
T Consensus 160 ~ 160 (339)
T PRK07688 160 I 160 (339)
T ss_pred C
Confidence 3
No 52
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.96 E-value=2.5e-27 Score=253.30 Aligned_cols=228 Identities=18% Similarity=0.237 Sum_probs=184.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCC-
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 258 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~- 258 (972)
+|+|+|+||+|+|++|||+++|||+++|+|.|.|+.+||+|||+++++|+|++||++++++|+++||+++|+.+.+.++
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987762
Q ss_pred -----hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEecCCCCCCcceeecccc
Q 002073 259 -----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASIS 333 (972)
Q Consensus 259 -----~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~~f~v~d~~ge~p~~~~I~~I~ 333 (972)
++++++||+||.|.|+.+.+..+|++|++++ +|||.+++.|+.|++++-.+..-.+++-... |
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~--iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~-~--------- 148 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLI--VPLIESGTEGFKGNAQVILPGMTECIECTLY-P--------- 148 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcccCCceEEEEEcCCCCCCcccCCC-C---------
Confidence 4689999999999999999999999999999 9999999999999998766421111110000 0
Q ss_pred cCCCceeecccccccccccCCeeEEEeeccccccCCCCCceecccCcceeeeccccccccceeecceEEEeecCeeeccc
Q 002073 334 NDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFK 413 (972)
Q Consensus 334 ~~~~~lVt~~~~~rh~~~dgd~V~f~ev~gm~eln~~~~~~I~~~~~~~f~i~~Dt~~f~~y~~gG~~~qvk~pk~i~fk 413 (972)
. . +...-.
T Consensus 149 -----------------------------------~------------------~-------------------~~~p~C 156 (234)
T cd01484 149 -----------------------------------P------------------Q-------------------KNFPMC 156 (234)
T ss_pred -----------------------------------C------------------C-------------------CCCCcc
Confidence 0 0 000001
Q ss_pred chhhhhcCCCccccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCCHHHHH
Q 002073 414 PLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLR 493 (972)
Q Consensus 414 sL~e~l~~p~~~l~~d~~k~~r~~~lh~~~~aL~~F~~~~grlP~~~~~~Da~~l~~la~~i~~~~~~~~~~~ide~lv~ 493 (972)
+++ ..| + ..-|-...|.+.|+ .+.++.+.+.+.++...++++ .+.++...++
T Consensus 157 ti~---~~P------------~-~~~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~---i~~~~~~~~~ 208 (234)
T cd01484 157 TIA---SMP------------R-LPEHCIEWARMLQW---------DDPEHIQFIFQASNERASQYN---IRGVTYFLTK 208 (234)
T ss_pred ccC---CCC------------C-CchHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcC---CCCcCHHHHH
Confidence 111 012 1 23577777777775 356788888888888888775 4567888999
Q ss_pred HHHhhcccccCchhhHhhhhhhhhHh
Q 002073 494 HFAFGARAVLNPMAAMFGGIVGQEVV 519 (972)
Q Consensus 494 ~~a~~~~~el~PvaA~iGGiaAQEVI 519 (972)
.++...-+.++.+.|++.|++.-|++
T Consensus 209 ~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 209 GVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred HHhcCeecchhhHHHHHHHHHHHhhC
Confidence 99999999999999999999998863
No 53
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.95 E-value=3.7e-28 Score=273.33 Aligned_cols=151 Identities=23% Similarity=0.417 Sum_probs=142.7
Q ss_pred Hhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccC--chH
Q 002073 158 EDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG--KNR 233 (972)
Q Consensus 158 ~~~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIG--k~R 233 (972)
++|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+++||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 4699999998 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEE
Q 002073 234 ALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 309 (972)
Q Consensus 234 Aea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~d 309 (972)
|++++++|+++||+++|+++..++++ ++++++|+||+|.++.+.+..+|++|++++ +|||++++.|++|+++..
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~--ip~i~~~~~g~~G~~~~~ 159 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYN--IPWIYGGCVGSYGVTYTI 159 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEEEEEEE
Confidence 99999999999999999999887763 467899999999999999999999999999 999999999999998754
Q ss_pred c
Q 002073 310 F 310 (972)
Q Consensus 310 f 310 (972)
.
T Consensus 160 ~ 160 (338)
T PRK12475 160 I 160 (338)
T ss_pred C
Confidence 3
No 54
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=2.6e-28 Score=260.43 Aligned_cols=155 Identities=29% Similarity=0.439 Sum_probs=140.9
Q ss_pred cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHH
Q 002073 565 FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 644 (972)
Q Consensus 565 ~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~ 644 (972)
+|.+.|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||||||++++.+|||++|+++++++++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccce-eEEEeCcccC
Q 002073 645 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTE 723 (972)
Q Consensus 645 ~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~-~~viip~~t~ 723 (972)
++||+++|+++...+++++.. +.+..++|+||+|+|+..+|..++++|+.+++|+|.++..|.+.. +++.+..+..
T Consensus 76 ~inP~~~V~~~~~~i~~~~~~---~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNSE---DLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred HHCCCcEEEEeeeecCHhHHH---HHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 999999999999988865432 223357999999999999999999999999999999998888776 7777777666
Q ss_pred ccCC
Q 002073 724 NYGA 727 (972)
Q Consensus 724 ~y~~ 727 (972)
.+.|
T Consensus 153 t~~~ 156 (231)
T cd00755 153 TSGD 156 (231)
T ss_pred cccC
Confidence 6654
No 55
>PRK07877 hypothetical protein; Provisional
Probab=99.95 E-value=2.5e-28 Score=295.10 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=155.6
Q ss_pred ceeeEeeeccCCCCCCCCCCccCCccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHcc-ccCCCCceEE
Q 002073 530 YQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMG-VSCGNQGKLT 608 (972)
Q Consensus 530 ~q~~yfD~~e~Lp~~~~~~~~~~~~~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~G-v~~~~~g~i~ 608 (972)
..|.||==-+.+- .-++++++. ..||+||+.+||.++|++|++++|+|||+| +||.++.+||++| + |+|+
T Consensus 65 ~~w~~~pw~~~~v-~~~~~~~~~--~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv-----G~l~ 135 (722)
T PRK07877 65 GRWVYYPWRRTVV-HLLGPREFR--AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLC-----GELR 135 (722)
T ss_pred CcEEEecchhhee-ecCCHHHhh--HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCC-----CeEE
Confidence 3688885222211 113344442 379999999999999999999999999997 9999999999999 6 8999
Q ss_pred EEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHH
Q 002073 609 ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNAR 688 (972)
Q Consensus 609 iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR 688 (972)
|+|+|.||.|||||| +|+..|||++|+++++++++++||+++|+++...+++++. ++|++++|+||+|+||+++|
T Consensus 136 lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~----~~~l~~~DlVvD~~D~~~~R 210 (722)
T PRK07877 136 LADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLDVVVEECDSLDVK 210 (722)
T ss_pred EEcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHhcCCCEEEECCCCHHHH
Confidence 999999999999999 6899999999999999999999999999999999997553 57789999999999999999
Q ss_pred HHHhhhhhccccceEecccCCccceeE--E--EeCcccCccCCC
Q 002073 689 LYVDQRCLYFQKPLLESGTLGAKCNTQ--M--VIPHLTENYGAS 728 (972)
Q Consensus 689 ~~v~~~c~~~~kPli~sgt~G~~G~~~--v--iip~~t~~y~~~ 728 (972)
..+++.|+.+++|+|.++..+ |.+. . +.| .++||.|-
T Consensus 211 ~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl 251 (722)
T PRK07877 211 VLLREAARARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGL 251 (722)
T ss_pred HHHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCC-CCceeecc
Confidence 999999999999999888555 5542 2 345 68999993
No 56
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.95 E-value=3.9e-28 Score=256.63 Aligned_cols=156 Identities=28% Similarity=0.385 Sum_probs=139.6
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccccc
Q 002073 555 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (972)
Q Consensus 555 ~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~ 634 (972)
+.-++++.+.||.+.|++|++++|+||||||+||+++++|+++|+ |+|+|+|.|.||.+||+||+++ .+|+|++
T Consensus 8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~ 81 (212)
T PRK08644 8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDVVEPSNLNRQQYF-ISQIGMP 81 (212)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEeccccccccEee-hhhCCCh
Confidence 445667778899999999999999999999999999999999999 9999999999999999999976 6799999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcc-ccceEecccCCccce
Q 002073 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKCN 713 (972)
Q Consensus 635 Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~-~kPli~sgt~G~~G~ 713 (972)
|+++++++++++||+++|+++...+++++. +++++++|+||+|+||.++|.++++.|... ++|+|.++..|..|.
T Consensus 82 Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~----~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 82 KVEALKENLLEINPFVEIEAHNEKIDEDNI----EELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeeecCHHHH----HHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 999999999999999999999988875432 467899999999999999999999999998 999998766666666
Q ss_pred eEEEeCc
Q 002073 714 TQMVIPH 720 (972)
Q Consensus 714 ~~viip~ 720 (972)
+..+.|.
T Consensus 158 ~~~~~~~ 164 (212)
T PRK08644 158 SNSIKTR 164 (212)
T ss_pred ceEEEec
Confidence 5555443
No 57
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.95 E-value=1.4e-27 Score=259.27 Aligned_cols=158 Identities=30% Similarity=0.430 Sum_probs=149.2
Q ss_pred CChhhHhhhhhhhhccCH--HHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccC
Q 002073 153 QTDIDEDLHSRQLAVYGR--ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (972)
Q Consensus 153 ~~~~d~~~YsRQi~l~G~--e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIG 230 (972)
.++++..|||||+++|+. ++|++|+.++|||+|+||+|++++++|+++|||+++|+|+|.|+.+||+||++++++|+|
T Consensus 3 ~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 3 LSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred ccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccC
Confidence 457888999999999654 459999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 002073 231 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (972)
Q Consensus 231 k~RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~v 306 (972)
++||+++++.|+++||.+.+..+...++. +++.++|+|++|.++++++..+|++|+.++ +|++++++.|+.|++
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~--~pli~~~~~~~~g~~ 160 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLG--IPLVHGGAIGFEGQV 160 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhC--CCeEeeeeccceEEE
Confidence 99999999999999999999999987764 467899999999999999999999999999 999999999999999
Q ss_pred EEEcCC
Q 002073 307 FCDFGP 312 (972)
Q Consensus 307 f~dfg~ 312 (972)
++..+.
T Consensus 161 ~~~~~~ 166 (254)
T COG0476 161 TVIIPG 166 (254)
T ss_pred EEEecC
Confidence 998865
No 58
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.95 E-value=5.5e-28 Score=237.83 Aligned_cols=135 Identities=34% Similarity=0.653 Sum_probs=122.7
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
+++||+|+|+|++||+++++|+++|+ |+|+|+|.|.|+.+||+||+||+.+|+|++|+++++++++++||+++|+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~ 75 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVE 75 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeee
Confidence 47899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEEE
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMV 717 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~vi 717 (972)
++...+..+.. ..+++++|+||+|+|+.++|.+++++|+.+++|+|++|+.|++|+++++
T Consensus 76 ~~~~~~~~~~~----~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~~ 135 (135)
T PF00899_consen 76 AIPEKIDEENI----EELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVMV 135 (135)
T ss_dssp EEESHCSHHHH----HHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEEE
T ss_pred eeecccccccc----cccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEC
Confidence 99999853221 4567899999999999999999999999999999999999999998754
No 59
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.95 E-value=3.1e-27 Score=256.51 Aligned_cols=142 Identities=17% Similarity=0.306 Sum_probs=132.5
Q ss_pred hhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHH
Q 002073 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (972)
Q Consensus 155 ~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RA 234 (972)
+....||+||.++||.++|++|++++|+|+|+||+|+++|++|+++|||+|||+|.|.|+.+|++||+++..+|||++||
T Consensus 7 ~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kv 86 (268)
T PRK15116 7 DAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKA 86 (268)
T ss_pred HHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCChh----hh-cCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEee
Q 002073 235 LASVQKLQELNNAVVLSTLTSKLTKE----QL-SDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 298 (972)
Q Consensus 235 ea~~~~L~eLNp~V~V~~~~~~l~~e----~l-~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~ 298 (972)
++++++++++||+++|+.+.+.++++ ++ .+||+||+|.++...+..|+++|++++ ||||.++
T Consensus 87 e~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~~g 153 (268)
T PRK15116 87 EVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVTTG 153 (268)
T ss_pred HHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEC
Confidence 99999999999999999998777643 44 479999999999999999999999999 9999763
No 60
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.95 E-value=1.4e-27 Score=250.85 Aligned_cols=122 Identities=30% Similarity=0.481 Sum_probs=113.8
Q ss_pred hhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHH
Q 002073 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (972)
Q Consensus 155 ~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RA 234 (972)
+.+.+||||||++||.++|+||++++|||+|+||+|+|+||||+++|||+|+|+|+|.|+.+||+|||++++ |+|++||
T Consensus 3 ~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KA 81 (287)
T PTZ00245 3 DAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRG 81 (287)
T ss_pred HHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999997 6899999
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCChhhhcCCceEEEcCCCHHHHH
Q 002073 235 LASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAI 279 (972)
Q Consensus 235 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~~~~~~~~~~ 279 (972)
++++++|+++||+|+|+.+...++++ .+|++||+++.+.+...
T Consensus 82 eaAa~~L~eLNP~V~V~~i~~rld~~--n~fqvvV~~~~~le~av 124 (287)
T PTZ00245 82 ARALGALQRLNPHVSVYDAVTKLDGS--SGTRVTMAAVITEEDAV 124 (287)
T ss_pred HHHHHHHHHHCCCcEEEEcccccCCc--CCceEEEEEcccHHHHH
Confidence 99999999999999999998888764 48999999998877654
No 61
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.94 E-value=3.3e-26 Score=262.14 Aligned_cols=131 Identities=20% Similarity=0.361 Sum_probs=124.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-----CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 180 NILVSGMQGLGAEIAKNLILAGV-----KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGV-----g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
+|+|||+||+|+|++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+|+|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred cCCC--------hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCC
Q 002073 255 SKLT--------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGP 312 (972)
Q Consensus 255 ~~l~--------~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~ 312 (972)
..++ +++++++|+||.|.|+.+.+..+|+.|+.++ +|||.+++.|+.|++.+-.+.
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~--iPli~~gt~G~~G~v~v~iP~ 144 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYR--KPLLESGTLGTKGNTQVVIPH 144 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEEecccceeEEEEEeCC
Confidence 7664 3678999999999999999999999999999 999999999999999887753
No 62
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.94 E-value=8.2e-27 Score=266.82 Aligned_cols=154 Identities=25% Similarity=0.369 Sum_probs=145.5
Q ss_pred ChhhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCc
Q 002073 154 TDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 231 (972)
Q Consensus 154 ~~~d~~~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk 231 (972)
+..+.++|+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++||+|||+++++|||+
T Consensus 109 s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 109 TDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred CHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCC
Confidence 34455899999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 002073 232 NRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (972)
Q Consensus 232 ~RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf 307 (972)
+||++++++|+++||+++|+.+...+++ ++++++|+||.|.++.+.+..+|++|++++ ||||.+++.|+.|++.
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~--ip~i~~~~~g~~g~v~ 266 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLG--KPLVYGAVFRFEGQVS 266 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEEE
Confidence 9999999999999999999999887764 467899999999999999999999999999 9999999999999987
Q ss_pred EE
Q 002073 308 CD 309 (972)
Q Consensus 308 ~d 309 (972)
.-
T Consensus 267 ~~ 268 (376)
T PRK08762 267 VF 268 (376)
T ss_pred EE
Confidence 53
No 63
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.6e-27 Score=262.12 Aligned_cols=361 Identities=19% Similarity=0.292 Sum_probs=231.3
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEE
Q 002073 171 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 250 (972)
Q Consensus 171 e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V 250 (972)
+-++++.+++||+||+||+|+|++|||++.|+++|+|+|-|+++.+||+|||+++.+|||++||.++++..+.+||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCh-----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEE-cCCceEEecCC-CCC
Q 002073 251 STLTSKLTK-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD-FGPEFTVVDVD-GED 323 (972)
Q Consensus 251 ~~~~~~l~~-----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~d-fg~~f~v~d~~-ge~ 323 (972)
..+...+.+ +|+.+||+|.-|.++++.|..+|+.|.... +|+|.+++.|+.||+.+. .|. -.++|-. -+.
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~--vPLIesGt~Gf~GQv~~ii~Gk-TECyeC~pK~~ 161 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAAS--VPLIESGTGGFLGQVQVIIKGK-TECYECIPKPV 161 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhc--CCceecCcccccceEEEEecCC-cceecccCCCC
Confidence 999887754 588999999999999999999999999999 999999999999999875 454 3444433 345
Q ss_pred CcceeecccccCCCceeecccccccc-----c-ccCC--ee-----EEEeeccccccCCCCCce----------ecc--c
Q 002073 324 PHTGIIASISNDNPALVSCVDDERLE-----F-QDGD--LV-----VFSEVHGMTELNDGKPRK----------IKS--A 378 (972)
Q Consensus 324 p~~~~I~~I~~~~~~lVt~~~~~rh~-----~-~dgd--~V-----~f~ev~gm~eln~~~~~~----------I~~--~ 378 (972)
|.+..+.-|.+....-++|+-=.+|- | ++++ +. .-...+.|++-....++. +.. +
T Consensus 162 ~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~ 241 (603)
T KOG2013|consen 162 PKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDK 241 (603)
T ss_pred CCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhh
Confidence 66666666665444556665211211 0 1111 11 111111221000000000 000 0
Q ss_pred Cc-c-eeeecccccccc---ceeec--ceEEEeecCeeecccchhhhhcCC----CccccccCcc------CC-CCChHH
Q 002073 379 RP-Y-SFTLEEDTTNYG---TYVKG--GIVTQVKQPKVLNFKPLREALEDP----GDFLLSDFSK------FD-RPPPLH 440 (972)
Q Consensus 379 ~~-~-~f~i~~Dt~~f~---~y~~g--G~~~qvk~pk~i~fksL~e~l~~p----~~~l~~d~~k------~~-r~~~lh 440 (972)
+. | -+.+ ++.-|. .|.++ ..+++.+.|..++|.+.-..-..+ .+.+.+-..+ .+ ....+-
T Consensus 242 ~~~~~~~~i--~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~ 319 (603)
T KOG2013|consen 242 NLDFGPFKI--FNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFR 319 (603)
T ss_pred ccCCChhhh--hhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHH
Confidence 00 0 0111 111111 13322 235666777776654322111111 0011111110 01 112233
Q ss_pred HHHHHHH-HHHHHhCC--CCCCCChhhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhhh
Q 002073 441 LAFQALD-KFVSELGR--FPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQE 517 (972)
Q Consensus 441 ~~~~aL~-~F~~~~gr--lP~~~~~~Da~~l~~la~~i~~~~~~~~~~~ide~lv~~~a~~~~~el~PvaA~iGGiaAQE 517 (972)
.+.++|+ +.....+. +--..++.++-+|++-|..+....-. ...-..-.++.||...-..++..+|+|||+..-|
T Consensus 320 ~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~--ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~e 397 (603)
T KOG2013|consen 320 LSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFG--IPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTE 397 (603)
T ss_pred HHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhc--cchhhhhchHhHhcccchhhhhhhhHHHHHHHHH
Confidence 3444441 11111122 11122356667777777766554310 1111233478899888899999999999999999
Q ss_pred HhhhhcCCccccceeeEeeec
Q 002073 518 VVKACSGKFHPLYQFFYFDSV 538 (972)
Q Consensus 518 VIKaiTgKf~PI~q~~yfD~~ 538 (972)
.+|.++|+|.-.+..|++-..
T Consensus 398 aiKvl~~~~~~~~~~f~~~~~ 418 (603)
T KOG2013|consen 398 AIKVLGGDFDDCNMIFLAKRP 418 (603)
T ss_pred HHHHhccchhcceeeEEccCC
Confidence 999999999999999988643
No 64
>PRK14852 hypothetical protein; Provisional
Probab=99.94 E-value=9.8e-27 Score=283.89 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=144.9
Q ss_pred hhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHH
Q 002073 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (972)
Q Consensus 155 ~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RA 234 (972)
...+.+|+||+++||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+|||+++.+|||++||
T Consensus 309 ~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Ka 388 (989)
T PRK14852 309 AYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKL 388 (989)
T ss_pred HHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHH
Confidence 55567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCC--HHHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 002073 235 LASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDIS--LDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (972)
Q Consensus 235 ea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~--~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~ 308 (972)
++++++|+++||+|+|+++.+.+++ ++++++|+||+|.|+ .+.+..+++.|++++ ||||.+++.|+.|++++
T Consensus 389 evaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~--IP~I~ag~~G~~g~v~v 466 (989)
T PRK14852 389 DVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELG--IPVITAGPLGYSCALLV 466 (989)
T ss_pred HHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcC--CCEEEeeccccCeeEEE
Confidence 9999999999999999999888765 478899999999985 566778889999999 99999999999999987
Q ss_pred EcC
Q 002073 309 DFG 311 (972)
Q Consensus 309 dfg 311 (972)
..+
T Consensus 467 ~~p 469 (989)
T PRK14852 467 FMP 469 (989)
T ss_pred EcC
Confidence 653
No 65
>PRK14851 hypothetical protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=279.09 Aligned_cols=157 Identities=13% Similarity=0.192 Sum_probs=147.6
Q ss_pred CChhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCch
Q 002073 153 QTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 232 (972)
Q Consensus 153 ~~~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~ 232 (972)
..+...++|+||+++||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+|||+++.+|||++
T Consensus 18 ~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 18 AAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 34777799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCC--HHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 002073 233 RALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDIS--LDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (972)
Q Consensus 233 RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~--~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~v 306 (972)
|+++++++|+++||+++|+++.+.+++ ++++++|+||+|.|+ .+.+..+++.|++++ ||+|.+++.|+.|++
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~--iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKG--IPVITAGPLGYSSAM 175 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCC--CCEEEeecccccceE
Confidence 999999999999999999999998865 468899999999995 577889999999999 999999999999999
Q ss_pred EEEcC
Q 002073 307 FCDFG 311 (972)
Q Consensus 307 f~dfg 311 (972)
++..+
T Consensus 176 ~~~~p 180 (679)
T PRK14851 176 LVFTP 180 (679)
T ss_pred EEEcC
Confidence 87553
No 66
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.94 E-value=1.3e-26 Score=272.06 Aligned_cols=192 Identities=21% Similarity=0.250 Sum_probs=152.6
Q ss_pred CHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcc---cccHHHHHHHH
Q 002073 566 GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASA 642 (972)
Q Consensus 566 G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dV---Gk~Ks~vaa~~ 642 (972)
..-..++|+++||+||||||+||+++++|+++|| |+|+++|+|+||.|||+||+||+.+|+ |++||++|+++
T Consensus 329 P~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV-----g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~ 403 (664)
T TIGR01381 329 PDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV-----RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKA 403 (664)
T ss_pred ChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHH
Confidence 3334599999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred HHhhCCCcEEEEeeccc-------CCCcc-cccc-----hhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCC
Q 002073 643 ATSINPRLNIEALQNRV-------GPETE-NVFD-----DTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLG 709 (972)
Q Consensus 643 l~~inP~~~I~~~~~~v-------~~~~e-~i~~-----~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G 709 (972)
|+++||+++|+++..++ +++.+ .+.. ..+++++|+|++|+||.++|.+++.+|..++||+|+++ .|
T Consensus 404 Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lG 482 (664)
T TIGR01381 404 LKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LG 482 (664)
T ss_pred HHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-ec
Confidence 99999999999999885 33211 1111 35789999999999999999999999999999999975 89
Q ss_pred ccceeEEE---e---------------CcccCccCCC--CCCCCC-CC----CCccccCCCCChhhHHHHHHHHhhhccc
Q 002073 710 AKCNTQMV---I---------------PHLTENYGAS--RDPPEK-QA----PMCTVHSFPHNIDHCLTWARSEFEGLLE 764 (972)
Q Consensus 710 ~~G~~~vi---i---------------p~~t~~y~~~--~dp~~~-~~----p~Ctl~~fP~~~~h~i~wAr~~F~~lF~ 764 (972)
+.|++-+. - +...+||.|. .-|... .. ..||+ .-|-...-+-.-|-+++..+..
T Consensus 483 fdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCtV-trPgv~~ias~~AvEll~~llq 561 (664)
T TIGR01381 483 FDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCTV-TRPGTAMIASGLAVELLVSVLQ 561 (664)
T ss_pred cceEEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccceE-ecchHHHHHHHHHHHHHHHHhc
Confidence 98886654 0 1246799996 112211 11 46873 4455554555556666654444
No 67
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.94 E-value=1.5e-26 Score=241.17 Aligned_cols=161 Identities=25% Similarity=0.404 Sum_probs=147.0
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccccc
Q 002073 555 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (972)
Q Consensus 555 ~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~ 634 (972)
..||.|.-+++|++..++|++++|+|||+||+|+.++..|||.|+ |+|+|||+|.|..+|+|||.-....+|||+
T Consensus 10 ~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~NRQi~A~~~~iGk~ 84 (263)
T COG1179 10 RQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNTNRQIHALLGDIGKP 84 (263)
T ss_pred HHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEecccccccccchhhHhhhhhcccH
Confidence 479999999999999999999999999999999999999999999 999999999999999999999888999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccce-
Q 002073 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN- 713 (972)
Q Consensus 635 Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~- 713 (972)
|+++++++++.|||.++|+++...+++++.+ +-+..++|+||||+|++.++..+-.+|+.+++|+|.+|..|.+-.
T Consensus 85 Kv~vm~eri~~InP~c~V~~~~~f~t~en~~---~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DP 161 (263)
T COG1179 85 KVEVMKERIKQINPECEVTAINDFITEENLE---DLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDP 161 (263)
T ss_pred HHHHHHHHHHhhCCCceEeehHhhhCHhHHH---HHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCC
Confidence 9999999999999999999999999987653 334568999999999999999999999999999998887776665
Q ss_pred eEEEeCcccC
Q 002073 714 TQMVIPHLTE 723 (972)
Q Consensus 714 ~~viip~~t~ 723 (972)
+++-+-.+..
T Consensus 162 Tri~v~Disk 171 (263)
T COG1179 162 TRIQVADISK 171 (263)
T ss_pred ceEEeeechh
Confidence 6666655443
No 68
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=2.6e-26 Score=227.92 Aligned_cols=133 Identities=37% Similarity=0.624 Sum_probs=125.8
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEee
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~ 656 (972)
||+|||+||+||+++++|+++|+ |+|+|+|+|.++.+||+||++++.+|+|++|+++++++++++||+++|+.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe
Confidence 68999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEEEe
Q 002073 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVI 718 (972)
Q Consensus 657 ~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~vii 718 (972)
..+...+. .+++.++|+||+|.|+.++|.+++++|+.+++|++++|+.|+.|+++++.
T Consensus 76 ~~~~~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 88765332 46789999999999999999999999999999999999999999998876
No 69
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-25 Score=237.95 Aligned_cols=277 Identities=17% Similarity=0.269 Sum_probs=203.3
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCC
Q 002073 168 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA 247 (972)
Q Consensus 168 ~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~ 247 (972)
-+.|..+-|.+++|||+|+||+|+|++|||+++|.+.+.++|.|.++.+||+|||+++++|||++||+++++.+....|.
T Consensus 30 ~~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~ 109 (422)
T KOG2015|consen 30 PSEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG 109 (422)
T ss_pred CCHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCC---ChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCC--------CceeEEeeecceeEEEEEEcCCceEE
Q 002073 248 VVLSTLTSKL---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQP--------AISFIKAEVRGLFGSVFCDFGPEFTV 316 (972)
Q Consensus 248 V~V~~~~~~l---~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~--------~IpfI~a~~~G~~G~vf~dfg~~f~v 316 (972)
..|..+-..+ +.+|+++|++||+..|+.+.|.+||....+... -||+|.+++.|+-|.+.+..+.--.+
T Consensus 110 ~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaC 189 (422)
T KOG2015|consen 110 CVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITAC 189 (422)
T ss_pred cEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHH
Confidence 9999887665 568999999999999999999999987554321 16999999999999999887532111
Q ss_pred ecCCCCCCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCceecccCcceeeecccccccccee
Q 002073 317 VDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYV 396 (972)
Q Consensus 317 ~d~~ge~p~~~~I~~I~~~~~~lVt~~~~~rh~~~dgd~V~f~ev~gm~eln~~~~~~I~~~~~~~f~i~~Dt~~f~~y~ 396 (972)
++-. + .++. +.+++ +|-.+ ...|+-++....|
T Consensus 190 ieCt-----------l--------dlyp------pqvs~-------P~CTi-AntPRlpEHciEy--------------- 221 (422)
T KOG2015|consen 190 IECT-----------L--------DLYP------PQVSY-------PMCTI-ANTPRLPEHCIEY--------------- 221 (422)
T ss_pred HHhH-----------H--------hhcC------cccCc-------cccee-cCCCCCchHhhhh---------------
Confidence 1100 0 0000 00000 00000 0011111111111
Q ss_pred ecceEEEeecCeeecccchhhhhcCCCccccccCccCCCCChHHHHHHHHHHHHHHhC-CCCC-CCChhhHHHHHHHHHH
Q 002073 397 KGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELG-RFPV-AGSEEDAQKLISVATN 474 (972)
Q Consensus 397 ~gG~~~qvk~pk~i~fksL~e~l~~p~~~l~~d~~k~~r~~~lh~~~~aL~~F~~~~g-rlP~-~~~~~Da~~l~~la~~ 474 (972)
..+.++-+.+- ..|. +.++++.+.+++-+.+
T Consensus 222 -----------------------------------------------v~liqwpe~~~~g~~~~gdd~~hI~wi~er~~e 254 (422)
T KOG2015|consen 222 -----------------------------------------------VKLIQWPELNPFGVPLDGDDPEHIEWIVERSNE 254 (422)
T ss_pred -----------------------------------------------hhhhcchhhCccCCCCCCCCHHHHHHHHHHHHH
Confidence 11111111110 1222 2246777777777777
Q ss_pred HHhhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhhhHhhhhcCCccccceeeEeeeccCCC
Q 002073 475 INESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLP 542 (972)
Q Consensus 475 i~~~~~~~~~~~ide~lv~~~a~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~~yfD~~e~Lp 542 (972)
..+++. ...++..++.-+....-...+.++|+|.+..|-|++|++|.-+.|++||+.|++.|+.=
T Consensus 255 RA~ef~---I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~y 319 (422)
T KOG2015|consen 255 RANEFN---ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIY 319 (422)
T ss_pred Hhhhcc---cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeeccccee
Confidence 766653 33467777777777666777888899999999999999999999999999999998864
No 70
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.93 E-value=2.1e-25 Score=219.55 Aligned_cols=130 Identities=35% Similarity=0.600 Sum_probs=120.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
++++|+|+|+||+|+++|+||+++||++|+|+|+|.|+++|++|||+++.+|+|++||++++++|+++||+++++++...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 002073 257 LTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (972)
Q Consensus 257 l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~ 308 (972)
+++ ++++++|+||+|.++.+.+..++++|++++ +|||++++.|+.|++.+
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~--~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYG--IPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT---EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEE
Confidence 854 467899999999999999999999999999 99999999999999864
No 71
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.93 E-value=1.3e-25 Score=244.65 Aligned_cols=183 Identities=21% Similarity=0.231 Sum_probs=148.1
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCc--ccccHHHHHHHHHHhhCCCcEEEE
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN--IGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~d--VGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
||+||||||+||+++++|+++|| |+|+|+|+|.|+.|||+||+||+.+| +|++|+++|+++|+++||+++|++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999 99999999999999999999999999 999999999999999999999999
Q ss_pred eecccC-------CCc----cccc--chhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEEEeCc-
Q 002073 655 LQNRVG-------PET----ENVF--DDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPH- 720 (972)
Q Consensus 655 ~~~~v~-------~~~----e~i~--~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~viip~- 720 (972)
+...+. +.. ...+ -.++++++|+|++|+||.++|.+++.+|..++||+++ +..|+.|++-+.-..
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmrhg~~ 154 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMRHGAG 154 (307)
T ss_pred eeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEEeCCC
Confidence 987761 000 0000 1467899999999999999999999999999999998 577888775543211
Q ss_pred ------------------ccCccCCCCC-CCCCC------CCCccccCCCCChhhHHHHHHHHhhhcccCC
Q 002073 721 ------------------LTENYGASRD-PPEKQ------APMCTVHSFPHNIDHCLTWARSEFEGLLEKT 766 (972)
Q Consensus 721 ------------------~t~~y~~~~d-p~~~~------~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~ 766 (972)
.-.||-|.-- .|..+ -..||. .-|-..--+-..|-++|-.+...+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctv-trpG~a~ias~~avEl~~s~lqhp 224 (307)
T cd01486 155 PQSQSGSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTV-TRPGLSMIASSIAVELLVSLLQHP 224 (307)
T ss_pred cccccccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccce-ecCchHHHHHHHHHHHHHHHHcCC
Confidence 3568988521 22222 246877 467777777788888887776543
No 72
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.93 E-value=2.5e-26 Score=256.18 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=139.9
Q ss_pred Cchhhhhhh---cC-HHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcc
Q 002073 556 SRYDAQISV---FG-AKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI 631 (972)
Q Consensus 556 ~RYdrqi~l---~G-~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dV 631 (972)
.||.||+.+ || .++|++|++++|+ |||+||.++..||. || |+|+|+|.|.||.|||+ +||+++||
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GV-----g~L~ivD~D~Ve~SNL~--~L~~~~di 121 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NV-----GALFISDKTYFQETAEI--DLYSKEFI 121 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CC-----CEEEEEcCCEechhhHH--HHhChhhc
Confidence 699999998 55 5589999999999 99999999999999 99 99999999999999999 99999999
Q ss_pred cccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHH--HhhhhhccccceEecccCC
Q 002073 632 GQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLY--VDQRCLYFQKPLLESGTLG 709 (972)
Q Consensus 632 Gk~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~--v~~~c~~~~kPli~sgt~G 709 (972)
|++|+++|++++.++||+++|+.+. ++++++|+||+|+||+.+|.. +|+.|+..++|+|.++..|
T Consensus 122 G~~K~~~a~~~L~~lnp~v~i~~~~-------------~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g 188 (318)
T TIGR03603 122 LKKDIRDLTSNLDALELTKNVDELK-------------DLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDG 188 (318)
T ss_pred CcHHHHHHHHHHHHhCCCCEEeeHH-------------HHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEcc
Confidence 9999999999999999999997642 456789999999999999966 9999999999999999999
Q ss_pred ccceeEEEeCcccCccCCC
Q 002073 710 AKCNTQMVIPHLTENYGAS 728 (972)
Q Consensus 710 ~~G~~~viip~~t~~y~~~ 728 (972)
+.|++.+++|+.|+||.|.
T Consensus 189 ~~Gqv~~~~P~~t~C~~Cl 207 (318)
T TIGR03603 189 PFVFITCTLPPETGCFECL 207 (318)
T ss_pred CEEEEEEEeCCCCCcHHHc
Confidence 9999888889999999996
No 73
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.93 E-value=2.7e-25 Score=234.99 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=130.2
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHH
Q 002073 159 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 238 (972)
Q Consensus 159 ~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~ 238 (972)
+.|.++...||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|.|.|+.+||+||||+ ++|+|++||++++
T Consensus 9 ~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~ 87 (212)
T PRK08644 9 EFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALK 87 (212)
T ss_pred HHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHH
Confidence 444555555999999999999999999999999999999999999999999999999999999876 7899999999999
Q ss_pred HHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhc-CCCceeEEeeecceeEE
Q 002073 239 QKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNH-QPAISFIKAEVRGLFGS 305 (972)
Q Consensus 239 ~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~-~~~IpfI~a~~~G~~G~ 305 (972)
++|+++||+++|+.+...+++ ++++++|+||.|.++.+.+..+++.|+++ + +|+|.+...|.+|+
T Consensus 88 ~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~--~p~I~~~~~~~~~~ 157 (212)
T PRK08644 88 ENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPG--KKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCC--CCEEEeehhhccCC
Confidence 999999999999999888865 56789999999999999999999999999 9 99999865544444
No 74
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.93 E-value=3.5e-25 Score=219.79 Aligned_cols=129 Identities=31% Similarity=0.423 Sum_probs=123.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~~ 259 (972)
+|+|+|+||+|+++||||+++|+++|+|+|+|.|+++||+||||++++|+|++||++++++|+++||+++++.+...+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999887754
Q ss_pred ----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 002073 260 ----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (972)
Q Consensus 260 ----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~df 310 (972)
++++++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|++|++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~--i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCCcEEEEEEEE
Confidence 578999999999999999999999999999 9999999999999999876
No 75
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.93 E-value=2.9e-25 Score=237.11 Aligned_cols=132 Identities=23% Similarity=0.350 Sum_probs=123.6
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCC
Q 002073 168 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA 247 (972)
Q Consensus 168 ~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~ 247 (972)
+|.++|++|++++|+|+|+||+|+++|+||+++||++|+|+|+|.|+++||+||++++++|||++||++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCCChh----hh-cCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecc
Q 002073 248 VVLSTLTSKLTKE----QL-SDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (972)
Q Consensus 248 V~V~~~~~~l~~e----~l-~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G 301 (972)
++|+.+...++++ ++ .+||+||+|.++...+..|+++|++++ ||||.+...|
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~s~g~g 137 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVISSMGAG 137 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeCCc
Confidence 9999999887642 33 469999999999999999999999999 9999875433
No 76
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=3.1e-25 Score=227.74 Aligned_cols=142 Identities=27% Similarity=0.392 Sum_probs=128.2
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEee
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~ 656 (972)
||+||||||+||+++++|+++|+ |+|+|+|.|.||.+||+||+++ .+|+|++|+++++++++++||+++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEE
Confidence 69999999999999999999999 9999999999999999999955 67999999999999999999999999999
Q ss_pred cccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcc-ccceEecccCCccceeEEEeCcc--cCccCCC
Q 002073 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKCNTQMVIPHL--TENYGAS 728 (972)
Q Consensus 657 ~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~-~kPli~sgt~G~~G~~~viip~~--t~~y~~~ 728 (972)
.++++++. +++++++|+||+|+||.++|..+++.|.+. ++|+|.++..|..|++..+.|.. ..||.|.
T Consensus 75 ~~~~~~~~----~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDENNL----EGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 98875431 467899999999999999999888888877 99999998889999988777654 4688885
No 77
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.91 E-value=2.1e-24 Score=226.23 Aligned_cols=156 Identities=31% Similarity=0.435 Sum_probs=128.9
Q ss_pred hhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHH
Q 002073 560 AQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA 639 (972)
Q Consensus 560 rqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~va 639 (972)
.+.+-+|++.|++|++++|+||||||+||+++++|+++|+ |+|+|+|.|.||.+||+||+ |+.+|+|++|++++
T Consensus 6 ~~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~ 79 (200)
T TIGR02354 6 ALVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEAL 79 (200)
T ss_pred HHHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCEEccccccccc-CChhhCCCHHHHHH
Confidence 3456689999999999999999999999999999999999 99999999999999999997 56689999999999
Q ss_pred HHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcc--ccceEecccCCcccee--E
Q 002073 640 ASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--QKPLLESGTLGAKCNT--Q 715 (972)
Q Consensus 640 a~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~--~kPli~sgt~G~~G~~--~ 715 (972)
++.++++||.++|+++..++++++. .++++++|+||+|+||.++|..+.+.|... ..+++.+ .|..|+. .
T Consensus 80 ~~~l~~inp~~~i~~~~~~i~~~~~----~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~ 153 (200)
T TIGR02354 80 KENISEINPYTEIEAYDEKITEENI----DKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDAN 153 (200)
T ss_pred HHHHHHHCCCCEEEEeeeeCCHhHH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCc
Confidence 9999999999999999998875432 467889999999999999999876666554 4455543 3333332 3
Q ss_pred EE-eCc-ccCccCC
Q 002073 716 MV-IPH-LTENYGA 727 (972)
Q Consensus 716 vi-ip~-~t~~y~~ 727 (972)
.+ .+. ...||.|
T Consensus 154 ~~~~~~~~~~~~~~ 167 (200)
T TIGR02354 154 SIKTRKISKHFYLC 167 (200)
T ss_pred eEEecccCCCEEEc
Confidence 33 322 2458888
No 78
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.91 E-value=3.5e-25 Score=238.64 Aligned_cols=169 Identities=22% Similarity=0.275 Sum_probs=154.8
Q ss_pred CChhhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccC
Q 002073 153 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (972)
Q Consensus 153 ~~~~d~~~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIG 230 (972)
.+..+-.|||||+.+ +|.+||.+|++++|||||+||+|+.++..|+.+|||++-|+|.|+|+.+||.||...+++.+|
T Consensus 39 Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg 118 (427)
T KOG2017|consen 39 LSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVG 118 (427)
T ss_pred CCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhh
Confidence 456677899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 002073 231 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (972)
Q Consensus 231 k~RAea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~v 306 (972)
+.||++++..++++||.|+|..+.+.++. +.+++||||++|+|+..+|+.|++.|.-.| +|+|++...++-|++
T Consensus 119 ~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLg--kpLVSgSaLr~EGQL 196 (427)
T KOG2017|consen 119 MHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLG--KPLVSGSALRWEGQL 196 (427)
T ss_pred hHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcC--Cccccccccccccee
Confidence 99999999999999999999999998865 468999999999999999999999999999 999999999999998
Q ss_pred EE---EcCCceEEecCCCCC
Q 002073 307 FC---DFGPEFTVVDVDGED 323 (972)
Q Consensus 307 f~---dfg~~f~v~d~~ge~ 323 (972)
-+ +-|+.|.+.=+++-+
T Consensus 197 tvYny~~GPCYRClFP~Ppp 216 (427)
T KOG2017|consen 197 TVYNYNNGPCYRCLFPNPPP 216 (427)
T ss_pred EEeecCCCceeeecCCCCcC
Confidence 32 445556555554433
No 79
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.90 E-value=4.9e-24 Score=224.35 Aligned_cols=114 Identities=21% Similarity=0.404 Sum_probs=105.9
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccH
Q 002073 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 635 (972)
Q Consensus 556 ~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~K 635 (972)
.|||||+++||.++|+||++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.|||+|||+++. |+|++|
T Consensus 7 ~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGV-----GsItIvDdD~Ve~SNL~RQfl~~~-dvGk~K 80 (287)
T PTZ00245 7 VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGV-----RAVAVADEGLVTDADVCTNYLMQG-EAGGTR 80 (287)
T ss_pred HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCC-----CeEEEecCCccchhhhcccccccc-ccCCcH
Confidence 69999999999999999999999999999999999999999999 999999999999999999999997 789999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCCh
Q 002073 636 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV 685 (972)
Q Consensus 636 s~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~ 685 (972)
+++++++++++||+++|+++..++++. .++.+|+-+.-+.
T Consensus 81 AeaAa~~L~eLNP~V~V~~i~~rld~~----------n~fqvvV~~~~~l 120 (287)
T PTZ00245 81 GARALGALQRLNPHVSVYDAVTKLDGS----------SGTRVTMAAVITE 120 (287)
T ss_pred HHHHHHHHHHHCCCcEEEEcccccCCc----------CCceEEEEEcccH
Confidence 999999999999999999999888653 3678887775443
No 80
>PRK07877 hypothetical protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=252.10 Aligned_cols=149 Identities=24% Similarity=0.274 Sum_probs=139.0
Q ss_pred CChhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCc
Q 002073 153 QTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGK 231 (972)
Q Consensus 153 ~~~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk 231 (972)
..++-..||+||+.+||.++|++|++++|+|+|+| +|+.+|.+|+++|| |+|+|+|.|.|+.+||+|| +++..|||+
T Consensus 82 ~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~ 159 (722)
T PRK07877 82 PREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGV 159 (722)
T ss_pred HHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhccc
Confidence 35777899999999999999999999999999996 99999999999996 9999999999999999998 579999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeecCCChh----hhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 002073 232 NRALASVQKLQELNNAVVLSTLTSKLTKE----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (972)
Q Consensus 232 ~RAea~~~~L~eLNp~V~V~~~~~~l~~e----~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf 307 (972)
+||++++++|+++||+++|+++...++++ +++++|+||+|.|+.+.+..+|+.|++++ ||+|++...+ |++.
T Consensus 160 ~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~--iP~i~~~~~~--g~~~ 235 (722)
T PRK07877 160 NKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARR--IPVLMATSDR--GLLD 235 (722)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCC--CCcC
Confidence 99999999999999999999999999764 67789999999999999999999999999 9999988555 6664
No 81
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.89 E-value=3e-23 Score=216.50 Aligned_cols=142 Identities=19% Similarity=0.316 Sum_probs=134.5
Q ss_pred hhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHH
Q 002073 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (972)
Q Consensus 155 ~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RA 234 (972)
+...++++|.-+++|.++++||++++|+|+|+||+|+.++..|+++|||+|||+|.|.|+.+|+|||.....++||++|+
T Consensus 7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCChhh-----hcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEee
Q 002073 235 LASVQKLQELNNAVVLSTLTSKLTKEQ-----LSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 298 (972)
Q Consensus 235 ea~~~~L~eLNp~V~V~~~~~~l~~e~-----l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~ 298 (972)
+++++++.++||+++|+.+...+++++ ..+||+||+|.|+......|-.+|++++ ||+|.+.
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k--i~vIss~ 153 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK--IPVISSM 153 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC--CCEEeec
Confidence 999999999999999999999888764 3469999999999999999999999999 9999654
No 82
>PRK06153 hypothetical protein; Provisional
Probab=99.89 E-value=2.9e-23 Score=232.70 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=118.8
Q ss_pred HHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCccc-ccccCcccc--cHHHHHHHHHH
Q 002073 568 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF-LFRDWNIGQ--AKSTVAASAAT 644 (972)
Q Consensus 568 ~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQf-Lf~~~dVGk--~Ks~vaa~~l~ 644 (972)
..|++|++++|+||||||+||.++..||++|| |+|+|+|+|.||.||||||. +|+.+|+|+ +|++++++++.
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-----geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPV-----REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCC-----CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 57999999999999999999999999999999 99999999999999999998 678999999 99999999999
Q ss_pred hhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccC
Q 002073 645 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 708 (972)
Q Consensus 645 ~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~ 708 (972)
++|| .|+++...+++++. ..+.++|+||+|+|+.++|..++++|..+++|+|++|..
T Consensus 244 ~in~--~I~~~~~~I~~~n~-----~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 244 NMRR--GIVPHPEYIDEDNV-----DELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HhCC--eEEEEeecCCHHHH-----HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 9998 57788888865432 356899999999999999999999999999999998864
No 83
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.4e-23 Score=225.56 Aligned_cols=188 Identities=23% Similarity=0.357 Sum_probs=165.8
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccc
Q 002073 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (972)
Q Consensus 554 ~~~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk 633 (972)
.+.|||||+|+||+.+|..|..++||++|||++|||++|||++.|| |.++|+|...|+.+.+..+|+...+++||
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gi-----gs~tvvd~~~v~~~d~g~nF~~~~~~~Gk 80 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGI-----GSFTVVDGSKVEQGDLGNNFFLDAKSIGK 80 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhccccc-----ccEEEEecceeeecchhhHHHHHHHhhch
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccce
Q 002073 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (972)
Q Consensus 634 ~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~ 713 (972)
+||++..+.+++.||+++-....+. |++--.-+..||+++++|+.+==+.+....++++|+..++||+...+.|+.|.
T Consensus 81 srA~a~~e~LqeLN~~V~~~~vee~--p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~ 158 (523)
T KOG2016|consen 81 SRAEATLEFLQELNPSVSGSFVEES--PDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGT 158 (523)
T ss_pred hHHHHHHHHHHHhChhhhcCccccC--hhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEE
Confidence 9999999999999999876655443 22222235689999999998866777888999999999999999999999999
Q ss_pred eEEEeCcccCccCCCCCCCCCCCCCccccCCCCChhhH
Q 002073 714 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 751 (972)
Q Consensus 714 ~~viip~~t~~y~~~~dp~~~~~p~Ctl~~fP~~~~h~ 751 (972)
+++.+.. +..-..+|+.+...+..-.+||++++|.
T Consensus 159 iRI~ikE---H~iieshPD~~~~DLRL~nPwpeLi~~v 193 (523)
T KOG2016|consen 159 IRISIKE---HTIIESHPDNPLDDLRLDNPWPELIEYV 193 (523)
T ss_pred EEEEeee---ccccccCCCCcccccccCCCcHHHHHHH
Confidence 9999864 4444566777778889999999999886
No 84
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.87 E-value=8.8e-22 Score=206.49 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=120.8
Q ss_pred hhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHH
Q 002073 164 QLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 243 (972)
Q Consensus 164 Qi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~e 243 (972)
+..-.|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+.+||+||+| ..+|+|++|++++.++|++
T Consensus 7 ~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~ 85 (200)
T TIGR02354 7 LVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISE 85 (200)
T ss_pred HHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHH
Confidence 334579999999999999999999999999999999999999999999999999999975 6689999999999999999
Q ss_pred hcCCCEEEEeecCCChh----hhcCCceEEEcCCCHHHHHHHH-HHHHhcCCCceeEEeeecceeEEEE
Q 002073 244 LNNAVVLSTLTSKLTKE----QLSDFQAVVFTDISLDKAIEFD-DFCHNHQPAISFIKAEVRGLFGSVF 307 (972)
Q Consensus 244 LNp~V~V~~~~~~l~~e----~l~~fdvVV~~~~~~~~~~~ln-~~c~~~~~~IpfI~a~~~G~~G~vf 307 (972)
+||+++++++...++++ +++++|+||.|.++.+.+..++ ++|+.++ .+++.+ ..|+.|+.+
T Consensus 86 inp~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~--~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 86 INPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYK--DKYLIA-ASGLAGYDD 151 (200)
T ss_pred HCCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcC--CCcEEE-EeccccCCC
Confidence 99999999998888764 5778999999999989887755 5555555 444444 367777664
No 85
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.87 E-value=8.3e-22 Score=202.46 Aligned_cols=127 Identities=23% Similarity=0.240 Sum_probs=116.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~~ 259 (972)
+|+|+|+||+|++++++|+++||++++|+|.|.|+.+||+||+|. .+|+|++||++++++|+++||+++++++...+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 699999999999999999999999999999999999999999965 6899999999999999999999999999888765
Q ss_pred ----hhhcCCceEEEcCCCHHHHHHHHHHHHhc-CCCceeEEeeecceeEEEEEE
Q 002073 260 ----EQLSDFQAVVFTDISLDKAIEFDDFCHNH-QPAISFIKAEVRGLFGSVFCD 309 (972)
Q Consensus 260 ----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~-~~~IpfI~a~~~G~~G~vf~d 309 (972)
++++++|+||.|.++.+.+..+++.|.++ + +|||.+...|.+|++...
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~--ip~i~~~~~~~~~~~~~~ 132 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKN--KPVVCASGMAGFGDSNNI 132 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEehhhccCCeEEE
Confidence 57889999999999999998888777776 8 999999988888887643
No 86
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.87 E-value=9.4e-22 Score=214.60 Aligned_cols=130 Identities=21% Similarity=0.277 Sum_probs=120.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCc--cCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDND--IGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~D--IGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
+|||+|+||||+++|++|+++|||+|+|+|+|.|+.+||+|||+++.+| +|++||++++++|+++||+|+|+.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999886543
Q ss_pred -----------------C----hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCC
Q 002073 258 -----------------T----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGP 312 (972)
Q Consensus 258 -----------------~----~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~ 312 (972)
+ +++++++|+|++|.|+.+.|..++.+|+.++ +|+|. ...|+.|++..-.|-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~--k~~I~-aalGfdg~lvmrhg~ 153 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKN--KLVIN-AALGFDSYLVMRHGA 153 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CcEEE-EEeccceEEEEEeCC
Confidence 1 2568899999999999999999999999999 99998 588999999887763
No 87
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.4e-22 Score=211.02 Aligned_cols=154 Identities=23% Similarity=0.465 Sum_probs=143.9
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccH
Q 002073 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 635 (972)
Q Consensus 556 ~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~K 635 (972)
.-||||||+||.+.|++|+++||+|+|.+|+|.|++||++++|| |++++.|.-.|....++-|||.+.+++|+.|
T Consensus 12 alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV-----~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~r 86 (331)
T KOG2014|consen 12 ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGV-----GSLTLLDDRLVTEEDVGAQFLISASSVGQTR 86 (331)
T ss_pred HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhccc-----ceeEEeeccccchhcCCceeEEchhhhchHH
Confidence 57999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeE
Q 002073 636 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 715 (972)
Q Consensus 636 s~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~ 715 (972)
+++..++++.+||.++|....+.+..- +.+||.+||+||-.--+.+.+..+|..|+..+++++.+++.|+.|++.
T Consensus 87 aeas~erl~~LNPmV~v~~d~edl~ek-----~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F 161 (331)
T KOG2014|consen 87 AEASLERLQDLNPMVDVSVDKEDLSEK-----DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAF 161 (331)
T ss_pred HHHHHHHHHhcCCceEEEechhhhhhc-----chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeee
Confidence 999999999999999999888777643 358999999998877788999999999999999999999999999987
Q ss_pred EEeC
Q 002073 716 MVIP 719 (972)
Q Consensus 716 viip 719 (972)
.-+-
T Consensus 162 ~dL~ 165 (331)
T KOG2014|consen 162 ADLQ 165 (331)
T ss_pred eehh
Confidence 6543
No 88
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.86 E-value=1.5e-21 Score=204.95 Aligned_cols=169 Identities=25% Similarity=0.441 Sum_probs=147.4
Q ss_pred cCchhhhhhh--cC-HHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcc
Q 002073 555 NSRYDAQISV--FG-AKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI 631 (972)
Q Consensus 555 ~~RYdrqi~l--~G-~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dV 631 (972)
...|+|.+++ .| .+..++|+...|.|||.||+|+-.+.+|-|+|| |++.+.|.|.||..|+||-| |+++..
T Consensus 59 SNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGI-----GkLlLfDYDkVElANMNRLF-f~P~Qa 132 (422)
T KOG2336|consen 59 SNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPDQA 132 (422)
T ss_pred CChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCc-----ceEEEeecchhhhhcccccc-cCcccc
Confidence 3679999988 34 356899999999999999999999999999999 99999999999999999986 689999
Q ss_pred cccHHHHHHHHHHhhCCCcEEEEeecccCCCc-ccccch-----hcc--CCCcEEEEccCChHHHHHHhhhhhccccceE
Q 002073 632 GQAKSTVAASAATSINPRLNIEALQNRVGPET-ENVFDD-----TFW--ENITCVINALDNVNARLYVDQRCLYFQKPLL 703 (972)
Q Consensus 632 Gk~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~-e~i~~~-----~f~--~~~DvVi~alDn~~aR~~v~~~c~~~~kPli 703 (972)
|.+|+++|+..|..+||++.|+.|+-+++.-. -+-|.+ .+. +..|+|+.|+||++||+.+|..|-..+.-|+
T Consensus 133 GlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~Wm 212 (422)
T KOG2336|consen 133 GLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWM 212 (422)
T ss_pred cchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999998887421 111111 111 3489999999999999999999999999999
Q ss_pred ecccC--CccceeEEEeCcccCccCCCC
Q 002073 704 ESGTL--GAKCNTQMVIPHLTENYGASR 729 (972)
Q Consensus 704 ~sgt~--G~~G~~~viip~~t~~y~~~~ 729 (972)
+||.. ...|++|.++|+.|.||.|.+
T Consensus 213 ESGVSEnAVSGHIQ~i~PGetACFACaP 240 (422)
T KOG2336|consen 213 ESGVSENAVSGHIQLIVPGETACFACAP 240 (422)
T ss_pred HccCccccccceeEEecCCccceecccC
Confidence 99976 478999999999999999953
No 89
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.86 E-value=3.7e-21 Score=226.42 Aligned_cols=140 Identities=20% Similarity=0.237 Sum_probs=129.4
Q ss_pred HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCcc---CchHHHHHHHHHHHhcC
Q 002073 170 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI---GKNRALASVQKLQELNN 246 (972)
Q Consensus 170 ~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DI---Gk~RAea~~~~L~eLNp 246 (972)
.-+.++|++++|||+|+||||+++|++|+++|||+|||+|.|.|+.+||+||++++.+|+ |++||++++++|+++||
T Consensus 330 ~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP 409 (664)
T TIGR01381 330 DLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFP 409 (664)
T ss_pred hhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCC
Confidence 344589999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCEEEEeecCC-------Ch--------------hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEE
Q 002073 247 AVVLSTLTSKL-------TK--------------EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 305 (972)
Q Consensus 247 ~V~V~~~~~~l-------~~--------------e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~ 305 (972)
.|+++.+...+ ++ ++++++|+|++|.|+.+.|..++.+|..++ +|+|.+ ..|+.|+
T Consensus 410 ~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~--kplI~a-AlGfdg~ 486 (664)
T TIGR01381 410 SIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHK--KIAISA-ALGFDSY 486 (664)
T ss_pred CcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEE-EeccceE
Confidence 99999887653 32 367899999999999999999999999999 999998 5899999
Q ss_pred EEEEcCC
Q 002073 306 VFCDFGP 312 (972)
Q Consensus 306 vf~dfg~ 312 (972)
+..-.|-
T Consensus 487 lvmrhG~ 493 (664)
T TIGR01381 487 VVMRHGI 493 (664)
T ss_pred EEEEecc
Confidence 9987774
No 90
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.85 E-value=2.4e-21 Score=216.40 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=133.1
Q ss_pred ChhhHhhhhhhhhc---cC-HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCcc
Q 002073 154 TDIDEDLHSRQLAV---YG-RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 229 (972)
Q Consensus 154 ~~~d~~~YsRQi~l---~G-~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DI 229 (972)
+..+-.||+||+.+ +| .++|++|++++|+ +||+|+.+|.+|+. |||+++|+|.|.|+.+||+ ++++++||
T Consensus 48 ~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~di 121 (318)
T TIGR03603 48 TKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFI 121 (318)
T ss_pred CHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhc
Confidence 45556899999999 56 5589999999999 99999999999999 9999999999999999999 89999999
Q ss_pred CchHHHHHHHHHHHhcCCCEEEEeecCCChhhhcCCceEEEcCCCHHHHHH--HHHHHHhcCCCceeEEeeecceeEEEE
Q 002073 230 GKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIE--FDDFCHNHQPAISFIKAEVRGLFGSVF 307 (972)
Q Consensus 230 Gk~RAea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~~~~~~~~~~~--ln~~c~~~~~~IpfI~a~~~G~~G~vf 307 (972)
|++|+++++++|.++||.+.|+.. .+.++++|+||+|.|++..+.. +|++|.+++ +|||.+...|+.|++.
T Consensus 122 G~~K~~~a~~~L~~lnp~v~i~~~-----~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~--~PlV~gav~g~~Gqv~ 194 (318)
T TIGR03603 122 LKKDIRDLTSNLDALELTKNVDEL-----KDLLKDYNYIIICTEHSNISLLRGLNKLSKETK--KPNTIAFIDGPFVFIT 194 (318)
T ss_pred CcHHHHHHHHHHHHhCCCCEEeeH-----HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHC--CCEEEEEEccCEEEEE
Confidence 999999999999999999999864 3578899999999999998865 999999999 9999999999999988
Q ss_pred EEc
Q 002073 308 CDF 310 (972)
Q Consensus 308 ~df 310 (972)
.-+
T Consensus 195 ~~~ 197 (318)
T TIGR03603 195 CTL 197 (318)
T ss_pred EEe
Confidence 765
No 91
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.6e-20 Score=198.51 Aligned_cols=157 Identities=22% Similarity=0.312 Sum_probs=141.9
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccH
Q 002073 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 635 (972)
Q Consensus 556 ~RYdrqi~l~G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~K 635 (972)
+...|++++||+++++||.++-|+||||||+|+.++-+|++.|+ ++|.|+|+|.|..|.||||......|||.||
T Consensus 55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~-----qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK 129 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGV-----QKIRIVDFDQVSLSSLNRHSCATLADVGTPK 129 (430)
T ss_pred HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcC-----ceEEEechhhccHhhhhhhhhhhHhhcCCch
Confidence 34557778999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccce-e
Q 002073 636 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-T 714 (972)
Q Consensus 636 s~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~-~ 714 (972)
+.++++.+++|.|.++|++...-+++++++ +-.+.+.|.|+||+||++++.-+-.+|..+++++|.+-..+.+.. +
T Consensus 130 ~~clkkh~skiaPw~eIdar~~l~~~~s~e---dll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPT 206 (430)
T KOG2018|consen 130 VMCLKKHFSKIAPWCEIDARNMLWTSSSEE---DLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPT 206 (430)
T ss_pred HHHHHHHHHhhCccceecHHHhhcCCCchh---hhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCc
Confidence 999999999999999999999999887764 234567999999999999999999999999999998777776665 5
Q ss_pred EEEeCc
Q 002073 715 QMVIPH 720 (972)
Q Consensus 715 ~viip~ 720 (972)
.+-+..
T Consensus 207 rv~v~D 212 (430)
T KOG2018|consen 207 RVNVAD 212 (430)
T ss_pred eeehhh
Confidence 555544
No 92
>PRK06153 hypothetical protein; Provisional
Probab=99.79 E-value=4.3e-19 Score=199.28 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=115.8
Q ss_pred HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCcccc-ccCcCccCc--hHHHHHHHHHHHhcC
Q 002073 170 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNF-VFSDNDIGK--NRALASVQKLQELNN 246 (972)
Q Consensus 170 ~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qf-fl~~~DIGk--~RAea~~~~L~eLNp 246 (972)
.+.|+||++++|+||||||+|+.++..|+++||++|+|+|.|.|+.+||+||+ +++++|+|+ +||+++++++.++|+
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 46799999999999999999999999999999999999999999999999998 468999999 999999999999998
Q ss_pred CCEEEEeecCCChh---hhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeee
Q 002073 247 AVVLSTLTSKLTKE---QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEV 299 (972)
Q Consensus 247 ~V~V~~~~~~l~~e---~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~ 299 (972)
.|.++...++++ .+.++|+||+|.|+.+.+..|+++|++++ ||||.+++
T Consensus 248 --~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~g--IP~Id~G~ 299 (393)
T PRK06153 248 --GIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALG--IPFIDVGM 299 (393)
T ss_pred --eEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEeee
Confidence 456666677654 57889999999999999999999999999 99998765
No 93
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-19 Score=212.55 Aligned_cols=151 Identities=21% Similarity=0.333 Sum_probs=143.3
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCC-----EEEEEeCCccCccCCccccccCcCccCchH
Q 002073 159 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVK-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNR 233 (972)
Q Consensus 159 ~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg-----~itLvD~d~V~~~DL~~qffl~~~DIGk~R 233 (972)
+|||-||+++|..-|+||.+.+|++||+|++|||.+||++++||| .|++.|.|.++.+||+|||+++..|||++|
T Consensus 411 sRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~K 490 (1013)
T KOG2012|consen 411 SRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPK 490 (1013)
T ss_pred CccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchH
Confidence 699999999999999999999999999999999999999999994 699999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeecCC--------ChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEE
Q 002073 234 ALASVQKLQELNNAVVLSTLTSKL--------TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 305 (972)
Q Consensus 234 Aea~~~~L~eLNp~V~V~~~~~~l--------~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~ 305 (972)
+++++.....+||+++|+++...+ +++||.+.|+|..+.|+.+.|..++.-|--+. +|++.++|.|.-|.
T Consensus 491 Se~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~--kPLLESGTlGTKGn 568 (1013)
T KOG2012|consen 491 SEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYR--KPLLESGTLGTKGN 568 (1013)
T ss_pred HHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhc--cchhhccCcCCccc
Confidence 999999999999999999987664 45789999999999999999999999999999 99999999999998
Q ss_pred EEEEcC
Q 002073 306 VFCDFG 311 (972)
Q Consensus 306 vf~dfg 311 (972)
+-+..+
T Consensus 569 tQVvvP 574 (1013)
T KOG2012|consen 569 TQVVVP 574 (1013)
T ss_pred eeEEec
Confidence 877665
No 94
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.75 E-value=4.6e-18 Score=182.55 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=114.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcC-----C-----EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhc
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGV-----K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN 245 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGV-----g-----~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLN 245 (972)
-+.++|+|||+||+|++++++|+++|+ | +|+|+|+|.|+++||+||+ +.++|||++||+++++++...|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 367899999999999999999999973 4 9999999999999999995 5678999999999999999888
Q ss_pred CCCEEEEeecCCCh-hhhcCCceEEEcCCCHHHHHHHHHHHHh---cCCCceeEEeeecceeEEEEE
Q 002073 246 NAVVLSTLTSKLTK-EQLSDFQAVVFTDISLDKAIEFDDFCHN---HQPAISFIKAEVRGLFGSVFC 308 (972)
Q Consensus 246 p~V~V~~~~~~l~~-e~l~~fdvVV~~~~~~~~~~~ln~~c~~---~~~~IpfI~a~~~G~~G~vf~ 308 (972)
.++++++...+++ +++.++|+||.|.|+.+.|..|++.|++ .+ .||+.+++.+.-|++..
T Consensus 88 -~~~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~--~~~ld~Gn~~~~gqv~~ 151 (244)
T TIGR03736 88 -GTDWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGY--AYWLDLGNRADDGQVIL 151 (244)
T ss_pred -CceEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccc--cceecccCCCCCCcEEE
Confidence 7899998877754 4567899999999999999999999988 24 79999999999888754
No 95
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.8e-17 Score=177.12 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=126.8
Q ss_pred hHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHH
Q 002073 157 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 236 (972)
Q Consensus 157 d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea 236 (972)
-.+...|.+..+|.++|+|++++-|.|||+||+|+.++-.|+++||++|.|+|.|.|+++.|+||-..+-.|||.||+.+
T Consensus 53 ireqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~c 132 (430)
T KOG2018|consen 53 IREQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMC 132 (430)
T ss_pred HHHHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHH
Confidence 33445688888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCh----hh-hcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEee
Q 002073 237 SVQKLQELNNAVVLSTLTSKLTK----EQ-LSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 298 (972)
Q Consensus 237 ~~~~L~eLNp~V~V~~~~~~l~~----e~-l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~ 298 (972)
++++++++.|+++|.+...-.+. +. +.+-|.||+|.|++++...|-++|+.++ +++|.+-
T Consensus 133 lkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~--l~Viss~ 197 (430)
T KOG2018|consen 133 LKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHG--LKVISST 197 (430)
T ss_pred HHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcC--CceEecc
Confidence 99999999999999987654432 33 4467999999999999999999999999 9999643
No 96
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.55 E-value=8e-16 Score=122.57 Aligned_cols=45 Identities=49% Similarity=1.046 Sum_probs=40.2
Q ss_pred cccCccCCCCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhccc
Q 002073 720 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLE 764 (972)
Q Consensus 720 ~~t~~y~~~~dp~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~ 764 (972)
++|+||+|+.+|+++++|+||||+||+.++|||+|||++|+++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999995
No 97
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.53 E-value=1.5e-14 Score=152.69 Aligned_cols=153 Identities=22% Similarity=0.344 Sum_probs=129.6
Q ss_pred ChhhHhhhhhhhhc--cCH-HHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccC
Q 002073 154 TDIDEDLHSRQLAV--YGR-ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (972)
Q Consensus 154 ~~~d~~~YsRQi~l--~G~-e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIG 230 (972)
.-.|.+-|||-+.+ .|. +..+|++...|.|||.||+|+-+|..|.++|||++.|+|-|.|++.|++|- |++++..|
T Consensus 55 EVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRL-Ff~P~QaG 133 (422)
T KOG2336|consen 55 EVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPDQAG 133 (422)
T ss_pred hHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccc-ccCccccc
Confidence 35577889999888 554 667899999999999999999999999999999999999999999999997 56788899
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh-hhh---------------cCCceEEEcCCCHHHHHHHHHHHHhcCCCcee
Q 002073 231 KNRALASVQKLQELNNAVVLSTLTSKLTK-EQL---------------SDFQAVVFTDISLDKAIEFDDFCHNHQPAISF 294 (972)
Q Consensus 231 k~RAea~~~~L~eLNp~V~V~~~~~~l~~-e~l---------------~~fdvVV~~~~~~~~~~~ln~~c~~~~~~Ipf 294 (972)
.+|++++.+.|.++||+|.++++.-.++. +.| +..|+|+.|.++++.+..+|..|-+.+ --|
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~--q~W 211 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELN--QTW 211 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhh--hHH
Confidence 99999999999999999999999877642 111 236999999999999999999999998 667
Q ss_pred EEeeec--ceeEEEEEE
Q 002073 295 IKAEVR--GLFGSVFCD 309 (972)
Q Consensus 295 I~a~~~--G~~G~vf~d 309 (972)
.-+++. ...|.|...
T Consensus 212 mESGVSEnAVSGHIQ~i 228 (422)
T KOG2336|consen 212 MESGVSENAVSGHIQLI 228 (422)
T ss_pred HHccCccccccceeEEe
Confidence 665553 345555433
No 98
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.42 E-value=3.4e-13 Score=158.22 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=121.0
Q ss_pred Cchhhhhhhc------CHHHHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccC
Q 002073 556 SRYDAQISVF------GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW 629 (972)
Q Consensus 556 ~RYdrqi~l~------G~~~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~ 629 (972)
+||..||.+| |....++-+++||+|+|.|++|+.++.+|+.+|+ ++|..+|.|.+ .|||||
T Consensus 104 ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-----~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-----PRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-----CcEEEEecccc-chhhhH-------
Confidence 8999999986 4455566699999999999999999999999999 99999999999 999999
Q ss_pred cccccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCCh--HHHHHHhhhhhccc---cceEe
Q 002073 630 NIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQ---KPLLE 704 (972)
Q Consensus 630 dVGk~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~--~aR~~v~~~c~~~~---kPli~ 704 (972)
||+. ++.|++ +||+++|+.+....+ +.+ .+.++++|+||...|+. .--.++|..|+..+ +|++-
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~~---~dl--~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAED---QHL--HEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCcc---hhH--HHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 7777 555555 999999999875222 222 34568999999999955 45579999999999 56667
Q ss_pred cccCCccceeEEEeCcccCccCC
Q 002073 705 SGTLGAKCNTQMVIPHLTENYGA 727 (972)
Q Consensus 705 sgt~G~~G~~~viip~~t~~y~~ 727 (972)
+|+.+..|-+.. |+.|+||.|
T Consensus 240 ~G~~~liGPlft--PgkTGCWeC 260 (637)
T TIGR03693 240 LKQVGLAGPVFQ--QHGDECFEA 260 (637)
T ss_pred cccceeecceEC--CCCCcHHHH
Confidence 777777776544 999999999
No 99
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.35 E-value=1.3e-12 Score=147.83 Aligned_cols=191 Identities=19% Similarity=0.234 Sum_probs=144.6
Q ss_pred HHHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccc---ccHHHHHHHHHHh
Q 002073 569 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG---QAKSTVAASAATS 645 (972)
Q Consensus 569 ~q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVG---k~Ks~vaa~~l~~ 645 (972)
..+++.+.|+++.|||.+||.++++|.--|| +|||.+|..+|..||--||.||+-+|-+ ++||++||++|++
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~ 408 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGV-----RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKE 408 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhcc-----ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHH
Confidence 4589999999999999999999999999999 9999999999999999999999998864 9999999999999
Q ss_pred hCCCcEEEEeecccCC-------Cc-ccc---c--chhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccc
Q 002073 646 INPRLNIEALQNRVGP-------ET-ENV---F--DDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (972)
Q Consensus 646 inP~~~I~~~~~~v~~-------~~-e~i---~--~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G 712 (972)
|+|.++-+.+.-.|.- .. +.. + =+.+.+..|+|+-.+|+.++|..-.-.|...+|-+|++. +|+--
T Consensus 409 IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDs 487 (669)
T KOG2337|consen 409 IFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDS 487 (669)
T ss_pred hCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-cccce
Confidence 9999987777665531 10 000 0 035678999999999999999999888988888888653 33322
Q ss_pred eeE-------------------EEeCc-ccCccCCCCC--CCC----CC-CCCccccCCCCChhhHHHHHHHHhhhcccC
Q 002073 713 NTQ-------------------MVIPH-LTENYGASRD--PPE----KQ-APMCTVHSFPHNIDHCLTWARSEFEGLLEK 765 (972)
Q Consensus 713 ~~~-------------------viip~-~t~~y~~~~d--p~~----~~-~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~ 765 (972)
++- -.+|+ .-.||-|.-- |.. ++ --.||. .-|-...=.-..|-+++-.+...
T Consensus 488 ylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTV-tRPG~a~IA~alAVELlvslLQh 566 (669)
T KOG2337|consen 488 YLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTV-TRPGVANIASALAVELLVSLLQH 566 (669)
T ss_pred eEEEecCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeec-cCCchhHHHHHHHHHHHHHHHhC
Confidence 111 01232 3468888421 221 11 136877 46776666667788888877765
Q ss_pred C
Q 002073 766 T 766 (972)
Q Consensus 766 ~ 766 (972)
+
T Consensus 567 P 567 (669)
T KOG2337|consen 567 P 567 (669)
T ss_pred c
Confidence 5
No 100
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.09 E-value=2.3e-11 Score=105.75 Aligned_cols=51 Identities=37% Similarity=0.731 Sum_probs=39.4
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHhhccCCCCccCCCCC
Q 002073 861 QFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDA 916 (972)
Q Consensus 861 ~fd~~~~~h~~fv~aaanL~a~~fgi~~~~~~~~~~~~~~~~~~~~~p~f~p~~~~ 916 (972)
+||+||++|++||+++|||||++|||+ + .++..+++++ +++||+|.|++++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~-~---~~~~~~~~i~-~~iIP~~~~t~~i 51 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIP-P---LDREEIKKIA-GNIIPAFAPTNAI 51 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHH-TTEE-B-HHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC-c---ccHHHHHHHh-cCcCCCcCCchhH
Confidence 599999999999999999999999999 4 6788999999 8899999999864
No 101
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.04 E-value=7.7e-10 Score=125.78 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=116.9
Q ss_pred HHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCcc---CchHHHHHHHHHHHhcCCC
Q 002073 172 TMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI---GKNRALASVQKLQELNNAV 248 (972)
Q Consensus 172 ~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DI---Gk~RAea~~~~L~eLNp~V 248 (972)
...++++.++|+.|+|.+|+.||.||+--||++||++|...|+.+|--||-+++-+|. |++||++++++|++++|.+
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m 413 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSM 413 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccc
Confidence 4578999999999999999999999999999999999999999999999999998887 5999999999999999988
Q ss_pred EEEEeecCC-------C--------------hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 002073 249 VLSTLTSKL-------T--------------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (972)
Q Consensus 249 ~V~~~~~~l-------~--------------~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf 307 (972)
.-+.+.-.+ . ++.++..|+|++..|+.+.|..=.-+|-.++ +.+.-...|+-.|+.
T Consensus 414 ~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~---KivINaALGFDsylV 490 (669)
T KOG2337|consen 414 EATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKN---KIVINAALGFDSYLV 490 (669)
T ss_pred cccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhc---ceEeeeecccceeEE
Confidence 766654332 1 1357788999999999998876666777776 344456788888888
Q ss_pred EEcCCc
Q 002073 308 CDFGPE 313 (972)
Q Consensus 308 ~dfg~~ 313 (972)
.-.|..
T Consensus 491 MRHG~~ 496 (669)
T KOG2337|consen 491 MRHGTG 496 (669)
T ss_pred EecCCC
Confidence 777743
No 102
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.03 E-value=1.5e-09 Score=127.98 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=110.4
Q ss_pred ChhhHhhhhhhhhcc------CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcC
Q 002073 154 TDIDEDLHSRQLAVY------GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDN 227 (972)
Q Consensus 154 ~~~d~~~YsRQi~l~------G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~ 227 (972)
++...+||..||..+ |.+..++.++++|+|+|+||+|+.++.+|+.+|++.|..+|.|.+ .+|++|
T Consensus 99 ~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 99 ESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred CHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH-------
Confidence 345559999999884 667778889999999999999999999999999999999999999 999998
Q ss_pred ccCchHHHHHHHHHHHhcCCCEEEEeecCCCh---hhhcCCceEEEcCC--CHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 228 DIGKNRALASVQKLQELNNAVVLSTLTSKLTK---EQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 228 DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~~---e~l~~fdvVV~~~~--~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
||+. ++.+.+ .||.|.|+.++...++ +.++++|+||+..+ ......++|+.|.+.+ .+||-+-..|.
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkeg--k~~IPai~~G~ 242 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEG--KGFIPAICLKQ 242 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcC--CCeEEEEEccc
Confidence 7766 555444 9999999998754333 46889999998877 5567889999999999 66665555444
Q ss_pred eE
Q 002073 303 FG 304 (972)
Q Consensus 303 ~G 304 (972)
.+
T Consensus 243 ~~ 244 (637)
T TIGR03693 243 VG 244 (637)
T ss_pred ce
Confidence 33
No 103
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.88 E-value=4.8e-05 Score=75.92 Aligned_cols=121 Identities=18% Similarity=0.266 Sum_probs=97.3
Q ss_pred cCeEEEEcCChHHHHHHHHHH---HhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 178 ASNILVSGMQGLGAEIAKNLI---LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLv---LaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.-.|.++|||-+|.-+|-+|. +.|+.+|.++|...|+..|+-- ..--.-+|.+|++-+ ++|..-.+.-.|++..
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih--rr~Ga~~GEyKv~Fi-~rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH--RRLGAKVGEYKVDFI-KRLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH--HHhCCCcchhHHHHH-HHhCcCCCCceeeccc
Confidence 346999999999999999987 5799999999999999999852 223356899999864 4667777888999999
Q ss_pred cCCChhhhc--CCceEEEcC---CCHHHHHHHHHHHHhcCCCceeEEeeecceeEE
Q 002073 255 SKLTKEQLS--DFQAVVFTD---ISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 305 (972)
Q Consensus 255 ~~l~~e~l~--~fdvVV~~~---~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~ 305 (972)
+.++.++++ .=||||.|. +....-..|-++|++.+ +.-| ++.|.||+
T Consensus 95 E~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG--~~Ti--sT~GVFGi 146 (217)
T COG4015 95 ENITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERG--IKTI--STNGVFGI 146 (217)
T ss_pred ccccccchhhhcCCEEEEEecCCCcchhHHHHHHHHHHcC--ceEe--ecCceeec
Confidence 999887654 238888774 46777788999999999 7544 77888885
No 104
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.52 E-value=0.0014 Score=69.41 Aligned_cols=98 Identities=10% Similarity=0.048 Sum_probs=72.7
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.|++.+|+|||.|.+|...++.|..+| .+||+++++.. +.+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 478899999999999999999999999 68999975311 1122233323455566
Q ss_pred cCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecc
Q 002073 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G 301 (972)
..+.+..+.++|+||.|+++.+....+.+.|+ .+ +++-.++.--
T Consensus 61 ~~~~~~~l~~adlViaaT~d~elN~~i~~~a~-~~--~lvn~~d~~~ 104 (202)
T PRK06718 61 KEFEPSDIVDAFLVIAATNDPRVNEQVKEDLP-EN--ALFNVITDAE 104 (202)
T ss_pred cCCChhhcCCceEEEEcCCCHHHHHHHHHHHH-hC--CcEEECCCCc
Confidence 66777788999999999999998899999994 46 6555544433
No 105
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.49 E-value=0.00012 Score=77.02 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=41.4
Q ss_pred CHHHHHHHhcCcEEEEcCCcchHH-HHHHHHHccccCC-CCceEEEE---cCCcccccCCCccc
Q 002073 566 GAKLQKKLEDAKVFIVGSGALGCE-FLKNVALMGVSCG-NQGKLTIT---DDDVIEKSNLSRQF 624 (972)
Q Consensus 566 G~~~q~kL~~~kVlIVGaGgiG~e-~lknLa~~Gv~~~-~~g~i~ii---D~D~Ie~SNLnRQf 624 (972)
+...+++|++.+|.|+|.|+.|++ ++..|+.+|++.. ....++|+ |++..+.+|+|||+
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~ 159 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRA 159 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHH
Confidence 345789999999999999999999 9999999999332 22223444 44444444444443
No 106
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.45 E-value=0.0022 Score=68.12 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=80.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
|++.+|+|||.|.+|..-++.|..+|. .||+++++.. +.+.++-..-.|+.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------------------~~l~~l~~~~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------------------SELTLLAEQGGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHHcCCEEEEeC
Confidence 678899999999999999999999996 8999987432 11222222225777777
Q ss_pred CCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 002073 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf 307 (972)
...++.+.++++||.+.+..+....+-..|++.+ +++-.++--.+..++|
T Consensus 61 ~~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~--ilvn~~d~~e~~~f~~ 110 (205)
T TIGR01470 61 CFDADILEGAFLVIAATDDEELNRRVAHAARARG--VPVNVVDDPELCSFIF 110 (205)
T ss_pred CCCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcC--CEEEECCCcccCeEEE
Confidence 7777888999999999988888889999999999 8886666555544443
No 107
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.09 E-value=0.0015 Score=64.65 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=57.4
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 174 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 174 ~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
..+++++|+|+|+||.|..+++.|...|+++|+|+..+ ..||+.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence 36889999999999999999999999999999998732 23666666655 44445544
Q ss_pred ecCCChhhhcCCceEEEcCCC
Q 002073 254 TSKLTKEQLSDFQAVVFTDIS 274 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~~ 274 (972)
.-.=-.+.+.++|+||.|+..
T Consensus 65 ~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 65 PLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp EGGGHCHHHHTESEEEE-SST
T ss_pred eHHHHHHHHhhCCeEEEecCC
Confidence 322112567899999998763
No 108
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.07 E-value=0.011 Score=60.36 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=67.6
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.|++.+|+|+|.|.+|...++.|...|. .+++++++... .+.++. .++...
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l~---~i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKELP---YITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhcc---CcEEEe
Confidence 5788999999999999999999999997 89998754321 112221 234556
Q ss_pred cCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcC
Q 002073 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 289 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~ 289 (972)
..+.++.+.++|+||.++++.+....+...|++++
T Consensus 61 ~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 61 KTFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred cccChhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence 67777888999999999999998889999998843
No 109
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.01 E-value=0.0016 Score=72.57 Aligned_cols=76 Identities=21% Similarity=0.266 Sum_probs=58.8
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEE
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I 652 (972)
+..++|+|+|+||.|..++..|+.+|+ ++|+|+|.+. .|++.+++.+...+|...+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~~-------------------~ka~~la~~l~~~~~~~~~ 180 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVDP-------------------ARAAALADELNARFPAARA 180 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCCH-------------------HHHHHHHHHHHhhCCCeEE
Confidence 556899999999999999999999999 8999997652 6888889888777776544
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEcc
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~al 682 (972)
..... + .....++|+||||+
T Consensus 181 ~~~~~--------~--~~~~~~aDiVInaT 200 (284)
T PRK12549 181 TAGSD--------L--AAALAAADGLVHAT 200 (284)
T ss_pred Eeccc--------h--HhhhCCCCEEEECC
Confidence 33211 0 12346799999996
No 110
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.98 E-value=0.0026 Score=70.87 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=59.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+..++|+|+|+||+|..++..|+..|+++|+|+|.+ ..||+..++.+.+..+.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 456799999999999999999999999999999864 258899999988887765553322
Q ss_pred CCChhhhcCCceEEEcC
Q 002073 256 KLTKEQLSDFQAVVFTD 272 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~ 272 (972)
.+ .+.+.++|+||.|+
T Consensus 185 ~~-~~~~~~aDiVInaT 200 (284)
T PRK12549 185 DL-AAALAAADGLVHAT 200 (284)
T ss_pred ch-HhhhCCCCEEEECC
Confidence 11 23456788888875
No 111
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.95 E-value=0.002 Score=63.79 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=56.0
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
..|.+++++|+|+||.|..+++.|+..|+ .+|+|++ |. ..|++.+++.+ +..
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~n----------Rt---------~~ra~~l~~~~----~~~ 59 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGA-----KEITIVN----------RT---------PERAEALAEEF----GGV 59 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEE----------SS---------HHHHHHHHHHH----TGC
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEE----------CC---------HHHHHHHHHHc----Ccc
Confidence 36889999999999999999999999999 8999985 32 24666666666 333
Q ss_pred EEEEeecccCCCcccccchhccCCCcEEEEccCCh
Q 002073 651 NIEALQNRVGPETENVFDDTFWENITCVINALDNV 685 (972)
Q Consensus 651 ~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~ 685 (972)
++..+.- +++ ...+.++|+||+|+...
T Consensus 60 ~~~~~~~------~~~--~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 60 NIEAIPL------EDL--EEALQEADIVINATPSG 86 (135)
T ss_dssp SEEEEEG------GGH--CHHHHTESEEEE-SSTT
T ss_pred ccceeeH------HHH--HHHHhhCCeEEEecCCC
Confidence 3333321 011 13467899999998644
No 112
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.89 E-value=0.015 Score=62.54 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=77.9
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.+++.+|||||.|.+|..=++.|..+|. .||++-++.. +.|.++-..-.++...
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~-------------------------~el~~l~~~~~i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS-------------------------KEFLDLKKYGNLKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 4568899999999999999999999996 7999876532 1112222223477777
Q ss_pred cCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
....++.+.++++||.|+++.+...++.+.|++.+ +++..++.-..
T Consensus 76 r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~--~lvn~vd~p~~ 121 (223)
T PRK05562 76 GNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLY--KLYIDCSDYKK 121 (223)
T ss_pred CCCChHHhCCCcEEEECCCCHHHHHHHHHHHHHcC--CeEEEcCCccc
Confidence 77888889999999999999999999999999999 77776655444
No 113
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0026 Score=73.42 Aligned_cols=101 Identities=22% Similarity=0.307 Sum_probs=70.6
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEe
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~ 655 (972)
.+|+|+|||++|+.++.+||+.|. ++|+|.|... .|+..++ ...-+ +++++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs~-------------------~~~~~i~---~~~~~--~v~~~ 52 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRSK-------------------EKCARIA---ELIGG--KVEAL 52 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCCH-------------------HHHHHHH---hhccc--cceeE
Confidence 589999999999999999999998 8999997332 1221111 12222 55555
Q ss_pred ecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCC
Q 002073 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLG 709 (972)
Q Consensus 656 ~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G 709 (972)
.-.+.... .+ .+.++++|+||+|+.-.-.+ -+-+.|...++++++.....
T Consensus 53 ~vD~~d~~-al--~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 53 QVDAADVD-AL--VALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred EecccChH-HH--HHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 54443211 11 25677889999999877777 56678999999999865443
No 114
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0049 Score=71.16 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=71.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 258 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~ 258 (972)
.+|+|+|+|++|+-+|.+|+..|.+.|++.|... ..+.++.+.... ++++..-+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc-cceeEEeccc
Confidence 5899999999999999999999999999998422 223344333322 4444443332
Q ss_pred -----hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeeccee
Q 002073 259 -----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 303 (972)
Q Consensus 259 -----~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~ 303 (972)
.+.++++|+||.+..+.-.. .+-+.|-+.+ +.++.+....-.
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~g--v~yvDts~~~~~ 104 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTG--VDYVDTSYYEEP 104 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhC--CCEEEcccCCch
Confidence 25788999999988765544 7788999999 998887665544
No 115
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.81 E-value=0.0024 Score=60.32 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=65.7
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.|++.+|+|+|.|.+|..=++.|..+| .++|++.++. .. +. ..++ ...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~---------------------~~-------~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF---------------------SE-------GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH---------------------HH-------TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh---------------------hh-------hHHH--HHh
Confidence 478899999999999999999999999 5999998765 00 00 2222 334
Q ss_pred cCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeee
Q 002073 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEV 299 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~ 299 (972)
..+. +.+.++++|+.+.++.+...++.+.|++++ +++-.++.
T Consensus 52 ~~~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~--i~vn~~D~ 93 (103)
T PF13241_consen 52 REFE-EDLDGADLVFAATDDPELNEAIYADARARG--ILVNVVDD 93 (103)
T ss_dssp SS-G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTT--SEEEETT-
T ss_pred hhHH-HHHhhheEEEecCCCHHHHHHHHHHHhhCC--EEEEECCC
Confidence 4454 568899999999999999999999999999 87765543
No 116
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.66 E-value=0.0093 Score=63.27 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=63.7
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
.|++++|+|||.|.+|...++.|...|. +|+|++.+. .+ .+.+.+. .-.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga------~V~VIs~~~------~~---------------~l~~l~~----~~~ 55 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA------HIVVISPEL------TE---------------NLVKLVE----EGK 55 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEcCCC------CH---------------HHHHHHh----CCC
Confidence 4788999999999999999999999996 899986431 10 0111111 112
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccce
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPL 702 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPl 702 (972)
+..... .|....+.++|+||.|+|+.+.-..+...| ..++++
T Consensus 56 i~~~~~--------~~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lv 97 (202)
T PRK06718 56 IRWKQK--------EFEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALF 97 (202)
T ss_pred EEEEec--------CCChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcE
Confidence 333222 233445678999999999999999999999 456654
No 117
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.54 E-value=0.0088 Score=60.20 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=93.2
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
.-.|.++|||-+|--++-+|... .-|.-.+|.++|...||..++----+ -.-+|.+|++-+++ +.+-.+.-.|++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~--HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~r-l~~~~f~r~V~a 92 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEV--HRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIKR-LGRVHFGRRVEA 92 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHH--hcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHHH-hCcCCCCceeec
Confidence 34699999999999999888754 22222899999999999998732211 24689999987664 445566778999
Q ss_pred eecccCCCcccccchhccCCCcEEEEcc---CChHHHHHHhhhhhccccceEecccCCccce
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINAL---DNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~al---Dn~~aR~~v~~~c~~~~kPli~sgt~G~~G~ 713 (972)
..+.++.++.+.+ .+ |+|+-|+ |....-..+-++|...+...| +|.|..|.
T Consensus 93 ~pE~it~dNlhll-----~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti--sT~GVFGi 146 (217)
T COG4015 93 FPENITKDNLHLL-----KG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI--STNGVFGI 146 (217)
T ss_pred ccccccccchhhh-----cC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe--ecCceeec
Confidence 9999998776554 22 7776554 677777889999999998877 45555554
No 118
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.17 E-value=0.019 Score=61.00 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=69.9
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEE
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I 652 (972)
|++++|+|||.|.+|..-++.|...|. +++|++.+.- ..+.+ +.+. -+|
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga------~VtVvsp~~~---------------------~~l~~-l~~~---~~i 55 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA------QLRVIAEELE---------------------SELTL-LAEQ---GGI 55 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC------EEEEEcCCCC---------------------HHHHH-HHHc---CCE
Confidence 678899999999999999999999997 9999987531 00111 1111 145
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecc
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 706 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sg 706 (972)
+.+...+. ...+.++++||.|+|+.+....+-..|...++|+-.++
T Consensus 56 ~~~~~~~~--------~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 56 TWLARCFD--------ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEeCCCC--------HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 54443332 23467899999999999888899999999999885443
No 119
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.16 E-value=0.0092 Score=56.33 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=62.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
.|++.+|+|||.|.+|..-++.|...|. +++|+..+. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA------~v~vis~~~-~~~~----------------------------~~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA------KVTVISPEI-EFSE----------------------------GLIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB------EEEEEESSE-HHHH----------------------------TSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECCch-hhhh----------------------------hHHH
Confidence 4789999999999999999999999997 999997765 1000 1122
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEec
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLES 705 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~s 705 (972)
.....+ . ..+.++++|+.|+|+.+....+-..|...++|+-.+
T Consensus 49 --~~~~~~--------~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 49 --LIRREF--------E-EDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp --EEESS---------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred --HHhhhH--------H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 222222 1 335789999999999999999999999999987643
No 120
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.11 E-value=0.033 Score=56.75 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=61.8
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
.|++.+|+|||.|.+|...++.|...|. +++||+.+..+. +.++ +.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga------~V~VIsp~~~~~-------------------------l~~l-~~-- 55 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA------FVTVVSPEICKE-------------------------MKEL-PY-- 55 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCccCHH-------------------------HHhc-cC--
Confidence 5788999999999999999999999997 999997553210 0111 11
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcc
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 698 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~ 698 (972)
++.... .|.+..+.++|+||.|+|+.+.-..+...|...
T Consensus 56 i~~~~~--------~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 56 ITWKQK--------TFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred cEEEec--------ccChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 222222 233455688999999999999888888888763
No 121
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.89 E-value=0.014 Score=67.59 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=64.3
Q ss_pred EEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEeec
Q 002073 578 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 657 (972)
Q Consensus 578 VlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~~ 657 (972)
|+|+|+|.+|..+++.|++.+-. .+++|.|.+. .|++.+++.+ ...++....-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~----~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~ 53 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF----EEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQV 53 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-----EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC----CcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEE
Confidence 78999999999999999998740 3889887554 2333333322 2345666665
Q ss_pred ccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEec
Q 002073 658 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLES 705 (972)
Q Consensus 658 ~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~s 705 (972)
.+... +.+ ..+++++|+||||+... .-..+-+.|...++++++.
T Consensus 54 d~~~~-~~l--~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 54 DVNDP-ESL--AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp -TTTH-HHH--HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred ecCCH-HHH--HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 55532 222 46789999999999877 5668889999999999993
No 122
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.89 E-value=0.11 Score=61.96 Aligned_cols=104 Identities=12% Similarity=0.100 Sum_probs=80.7
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.|++.+|+|||.|.++..=++.|..+|. +||++-++.. +.|.++-..-.++...
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999997 7888854321 1223333334577777
Q ss_pred cCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 002073 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~v 306 (972)
....++.+.++++||.|+++.+...+|.+.|++.+ +++-.++.-....++
T Consensus 63 ~~~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~--~lvN~~d~~~~~~f~ 112 (457)
T PRK10637 63 GPFDESLLDTCWLAIAATDDDAVNQRVSEAAEARR--IFCNVVDAPKAASFI 112 (457)
T ss_pred CCCChHHhCCCEEEEECCCCHHHhHHHHHHHHHcC--cEEEECCCcccCeEE
Confidence 78888889999999999999999999999999999 877666654443333
No 123
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.65 E-value=0.075 Score=56.81 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=76.3
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.|.+++|+|||.|.+|.-=++.|+.+|. +++++-++. ... ...+.+-+ .+....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~--~~e--------------------l~~~~~~~---~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF--EPE--------------------LKALIEEG---KIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc--cHH--------------------HHHHHHhc---Ccchhh
Confidence 4678899999999999999999999998 788776543 111 11222222 255555
Q ss_pred cCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
+....+.+..+++||.++++.+...++.+.|++++ ++.-.++--.+
T Consensus 63 ~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~--i~vNv~D~p~~ 108 (210)
T COG1648 63 REFDAEDLDDAFLVIAATDDEELNERIAKAARERR--ILVNVVDDPEL 108 (210)
T ss_pred cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhC--CceeccCCccc
Confidence 66777777789999999999999999999999999 77776666555
No 124
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.45 E-value=0.039 Score=61.59 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=51.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+.+++|+|+|+||.|..|+-.|+..|+++|+|+|.+. .||+++++++.+..+...+.....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~~ 185 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVDA 185 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecCH
Confidence 3467999999999999999999999999999997432 377777777654444322222110
Q ss_pred CCChhhhcCCceEEEcC
Q 002073 256 KLTKEQLSDFQAVVFTD 272 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~ 272 (972)
.-..+.+..+|+||.|+
T Consensus 186 ~~~~~~~~~~divINaT 202 (283)
T PRK14027 186 RGIEDVIAAADGVVNAT 202 (283)
T ss_pred hHHHHHHhhcCEEEEcC
Confidence 00012344567777654
No 125
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.12 E-value=0.045 Score=61.09 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=53.4
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEE
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I 652 (972)
+.+++++|+||||.|..++-.|+..|+ .+|+|+|.+. .|++.+++.+....+...+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~ 180 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLDT-------------------SRAQALADVINNAVGREAV 180 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCCH-------------------HHHHHHHHHHhhccCcceE
Confidence 456799999999999999999999999 8999996442 3777787776544333222
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEcc
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~al 682 (972)
.... .. . + ......+|+||||+
T Consensus 181 ~~~~--~~----~-~-~~~~~~~divINaT 202 (283)
T PRK14027 181 VGVD--AR----G-I-EDVIAAADGVVNAT 202 (283)
T ss_pred EecC--Hh----H-H-HHHHhhcCEEEEcC
Confidence 2111 00 0 0 11235789999996
No 126
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.10 E-value=0.033 Score=62.23 Aligned_cols=171 Identities=16% Similarity=0.091 Sum_probs=87.3
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCC-c--ccccccCcccccHHHHHHHHHHhhCCCcEE
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS-R--QFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLn-R--QfLf~~~dVGk~Ks~vaa~~l~~inP~~~I 652 (972)
.+|.|||+|.+|+.++.+|++.|. .+++.|.+.=...... | +.+=+...-|+.....+...+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-------- 71 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV------DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALA-------- 71 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHh--------
Confidence 489999999999999999999998 8999986532211100 0 0000000111111111111111
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEccC-ChHHHHHHhhhhhc----cccceEecccCCc-cceeEEEeCcccCccC
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLY----FQKPLLESGTLGA-KCNTQMVIPHLTENYG 726 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~----~~kPli~sgt~G~-~G~~~viip~~t~~y~ 726 (972)
++...+ + + +-++++|+||.|+- +.+.+..+-..... .+..+. +.|.+. -........+-.-+.+
T Consensus 72 -----~l~~~~-~-~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~-snTS~~~~~~la~~~~~~~r~~g 141 (286)
T PRK07819 72 -----RLRFTT-D-L--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLA-SNTSSIPIMKLAAATKRPGRVLG 141 (286)
T ss_pred -----CeEeeC-C-H--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEE-ECCCCCCHHHHHhhcCCCccEEE
Confidence 111111 1 1 12578999999865 55556544332222 233343 333221 1111101111111112
Q ss_pred CCCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhcccCChhhH
Q 002073 727 ASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (972)
Q Consensus 727 ~~~dp~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~ 770 (972)
..--.|....|+..+-.-+.....++++++.++....++.|-.+
T Consensus 142 ~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 142 LHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred EecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 21111223446667778889999999999998877677665544
No 127
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.03 E-value=0.085 Score=56.85 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=70.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
.+++.+|+|||.|.++..=++.|...|. +|+|+-++.- + ++ ..+++ ++ +
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA------~VtVVap~i~------------~-el-----~~l~~-----~~--~ 70 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC------YVYILSKKFS------------K-EF-----LDLKK-----YG--N 70 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCCC------------H-HH-----HHHHh-----CC--C
Confidence 4568899999999999999999999997 9999966531 0 00 00111 22 3
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecc
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 706 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sg 706 (972)
|+.+...+. ...+.++++||.|+|+.+.-..+...|...++++..+.
T Consensus 71 i~~~~r~~~--------~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 71 LKLIKGNYD--------KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred EEEEeCCCC--------hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 444444332 34567899999999999999999999999998877543
No 128
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.94 E-value=0.088 Score=62.21 Aligned_cols=96 Identities=24% Similarity=0.223 Sum_probs=65.5
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.|++++|+|+|.|++|.++|+.|+..|. .|+++|.+.- ...+...++|.+++ ++...
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~~----~~~~~ 58 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE------------------DQLKEALEELGELG----IELVL 58 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcC----CEEEe
Confidence 3678999999999999999999999997 7999986431 01111223343332 34444
Q ss_pred cCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEE
Q 002073 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~ 296 (972)
....++...++|+||.+.... ....+-..|++++ ||++.
T Consensus 59 ~~~~~~~~~~~d~vv~~~g~~-~~~~~~~~a~~~~--i~~~~ 97 (450)
T PRK14106 59 GEYPEEFLEGVDLVVVSPGVP-LDSPPVVQAHKKG--IEVIG 97 (450)
T ss_pred CCcchhHhhcCCEEEECCCCC-CCCHHHHHHHHCC--CcEEe
Confidence 444555677899999876532 2234667889999 88774
No 129
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.92 E-value=0.053 Score=60.49 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=51.9
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEE
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I 652 (972)
++.++++|+|+||.|..++..|+.+|+ .+|+|++.+ ..|++.+++.+.... .+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-----~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~ 175 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-----TDITVINRN-------------------PDKLSRLVDLGVQVG---VI 175 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-----CeEEEEeCC-------------------HHHHHHHHHHhhhcC---cc
Confidence 567899999999999999999999999 899998532 246777776654321 11
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEccC
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINALD 683 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~alD 683 (972)
..+. . .++. ......+|+||||+-
T Consensus 176 ~~~~----~-~~~~--~~~~~~~DiVInaTp 199 (282)
T TIGR01809 176 TRLE----G-DSGG--LAIEKAAEVLVSTVP 199 (282)
T ss_pred eecc----c-hhhh--hhcccCCCEEEECCC
Confidence 1111 0 0000 123367999999973
No 130
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.90 E-value=0.06 Score=60.01 Aligned_cols=75 Identities=20% Similarity=0.113 Sum_probs=52.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee-
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT- 254 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~- 254 (972)
+++.+|+|+|+||.|..++..|...|+++|+|++.+ ..||+.+++++.+.. .+....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceeccc
Confidence 567899999999999999999999999999999742 237777776664331 121111
Q ss_pred -cCCChhhhcCCceEEEcCC
Q 002073 255 -SKLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 255 -~~l~~e~l~~fdvVV~~~~ 273 (972)
.++ .+.+.++|+||.|+.
T Consensus 181 ~~~~-~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 DSGG-LAIEKAAEVLVSTVP 199 (282)
T ss_pred hhhh-hhcccCCCEEEECCC
Confidence 111 134567899998863
No 131
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.87 E-value=0.09 Score=52.56 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=53.9
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCC-EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCC--EEEEeec
Q 002073 180 NILVSGM-QGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV--VLSTLTS 255 (972)
Q Consensus 180 ~VlIvG~-gGlG~EiaKNLvLaGVg-~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V--~V~~~~~ 255 (972)
||.|+|+ |.+|+.+|-.|++.|+. ++.|+|.+ ..+++..+.-|....+.. .+....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~- 61 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS- 61 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc-
Confidence 7999999 99999999999999985 59999852 225555555666554433 333333
Q ss_pred CCChhhhcCCceEEEcCC
Q 002073 256 KLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~ 273 (972)
-+.+.+++.|+||.|..
T Consensus 62 -~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 62 -GDYEALKDADIVVITAG 78 (141)
T ss_dssp -SSGGGGTTESEEEETTS
T ss_pred -ccccccccccEEEEecc
Confidence 35567889999999864
No 132
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.86 E-value=0.055 Score=55.16 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=64.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC-C
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK-L 257 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~-l 257 (972)
.+|.+||+|-.|..+|+||..+|. .++++|.+.-....+... |-..+....+.+++. ++-+...... -
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 489999999999999999999998 799998653222222111 111111111222221 4444443321 0
Q ss_pred Chh------h---hcCCceEEEcC-CCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 258 TKE------Q---LSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 258 ~~e------~---l~~fdvVV~~~-~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
.++ . +..=++||++. .+++...++.+.+.+++ +.||.+.+.|-
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeeeeeeecc
Confidence 111 1 22335777665 47888889999999999 99999998774
No 133
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.76 E-value=0.072 Score=59.62 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=54.4
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEE
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I 652 (972)
+.+++++|+|+||+|..++..|+..|+ .+|+|++.+.- ...|++.+++.+....+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCcee
Confidence 457889999999999999999999999 78999864310 013556666666555554444
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEcc
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~al 682 (972)
.... +.. .+.+ ...+..+|+||||+
T Consensus 183 ~~~d--~~~-~~~~--~~~~~~~DilINaT 207 (289)
T PRK12548 183 NVYD--LND-TEKL--KAEIASSDILVNAT 207 (289)
T ss_pred EEec--hhh-hhHH--HhhhccCCEEEEeC
Confidence 3222 221 1111 12345679999986
No 134
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=94.56 E-value=0.026 Score=51.39 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=30.9
Q ss_pred ccccCchhhHhhhhhhhhHhhhhcCCccccc-eeeEeeeccC
Q 002073 500 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLY-QFFYFDSVES 540 (972)
Q Consensus 500 ~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~-q~~yfD~~e~ 540 (972)
.|-|.|+.+++|.+.|+|+||.++|.-.|+. ..++||+.+.
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~ 64 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNM 64 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCC
Confidence 4789999999999999999999999877754 6788998754
No 135
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.56 E-value=0.16 Score=56.27 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC------ceEEEeCC
Confidence 479999999999999999999998 89999865
No 136
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.44 E-value=0.091 Score=58.41 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=32.3
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.+.+++++|+|+|++|..+++.|+..|+ .+|+|++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~-----~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGV-----AEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 3667899999999999999999999998 79999864
No 137
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.43 E-value=0.12 Score=57.46 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=53.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.+.+++|+|+|+||+|..+++.|...|+.+|++++.+ ..|++.+++.+....+ +.+ .
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 3667899999999999999999999999999999752 1356666666543321 222 1
Q ss_pred cCCChhhhcCCceEEEcCC
Q 002073 255 SKLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~ 273 (972)
..+ .+.+.++|+||.|..
T Consensus 177 ~~~-~~~~~~~DivInaTp 194 (278)
T PRK00258 177 LEL-QEELADFDLIINATS 194 (278)
T ss_pred ccc-hhccccCCEEEECCc
Confidence 111 245678899988763
No 138
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.41 E-value=0.06 Score=62.74 Aligned_cols=76 Identities=26% Similarity=0.304 Sum_probs=57.0
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
|.+++|||||+|-+|.-+||+|...|++.|+|.. |+ ..||+.+++++. ..+....
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN----------RT---------~erA~~La~~~~-----~~~~~l~- 230 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN----------RT---------LERAEELAKKLG-----AEAVALE- 230 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc----------CC---------HHHHHHHHHHhC-----CeeecHH-
Confidence 8899999999999999999999999999999964 22 237777777765 2222211
Q ss_pred CCChhhhcCCceEEEcCCCHHH
Q 002073 256 KLTKEQLSDFQAVVFTDISLDK 277 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~~~~~ 277 (972)
-..+.+..+|+||.++.....
T Consensus 231 -el~~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 231 -ELLEALAEADVVISSTSAPHP 251 (414)
T ss_pred -HHHHhhhhCCEEEEecCCCcc
Confidence 123578899999998875443
No 139
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.40 E-value=0.12 Score=58.31 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=51.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCC-EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcC----CCEEEEe
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN----AVVLSTL 253 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg-~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp----~V~V~~~ 253 (972)
.+|.|+|+|++|..+|..|+..|+. +|+|+|.+. .+++..+..|....+ .+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~-------------------~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE-------------------EKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------chhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 899998532 245555555555432 233332
Q ss_pred ecCCChhhhcCCceEEEcCC
Q 002073 254 TSKLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~ 273 (972)
.+.+.+.++|+||.|..
T Consensus 61 ---~~~~~l~~aDIVIitag 77 (306)
T cd05291 61 ---GDYSDCKDADIVVITAG 77 (306)
T ss_pred ---CCHHHhCCCCEEEEccC
Confidence 23345789999999865
No 140
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.28 E-value=0.13 Score=57.48 Aligned_cols=74 Identities=26% Similarity=0.337 Sum_probs=54.9
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
...+|+|+|+||.+..|+..|...|+++|+|+..+ ..||+.+++.+.+..+.+.......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~- 184 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALAD- 184 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccccc-
Confidence 46899999999999999999999999999998642 3488888888888877433332221
Q ss_pred CChhhhcCCceEEEcC
Q 002073 257 LTKEQLSDFQAVVFTD 272 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~ 272 (972)
+ +....+|+||-|+
T Consensus 185 ~--~~~~~~dliINaT 198 (283)
T COG0169 185 L--EGLEEADLLINAT 198 (283)
T ss_pred c--ccccccCEEEECC
Confidence 1 1111688888775
No 141
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=94.22 E-value=0.16 Score=53.61 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=69.4
Q ss_pred hhhccCHHHHHHhhcCeEEEEcCChHHHH-HHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHH
Q 002073 164 QLAVYGRETMRRLFASNILVSGMQGLGAE-IAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQ 242 (972)
Q Consensus 164 Qi~l~G~e~q~kL~~s~VlIvG~gGlG~E-iaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~ 242 (972)
.+..=+.++++++++++|.|+|.|+.|++ ++..|..+||+.+.
T Consensus 91 ~~g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------------------------ 134 (193)
T TIGR03882 91 GLGVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------------------------ 134 (193)
T ss_pred HcCCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------------------------
Confidence 34556778899999999999999999988 99999999998655
Q ss_pred HhcCCCEEEEeecCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 002073 243 ELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (972)
Q Consensus 243 eLNp~V~V~~~~~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~v 306 (972)
++ ...++|++.+........+|+..++.+ +|++.+...|..+.|
T Consensus 135 ---------------~~---a~l~vVl~~Dyl~p~L~~~n~~~l~~~--~~~l~v~~~~~~~~~ 178 (193)
T TIGR03882 135 ---------------SE---ADLTVVLTDDYLDPELAAINQRALAAG--RPWLLVKPGGVQPWI 178 (193)
T ss_pred ---------------CC---CCEEEEEeCCCCChHHHHHHHHHHHcC--CceEEEEeCCceEEE
Confidence 00 134555555556667789999999999 999999998887765
No 142
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.19 E-value=0.066 Score=62.41 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=58.6
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
..|.+++++|||||.+|.-+++.|+..|+ .+|+|. ||++ .||.-+|+.+. .
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~Ia----------NRT~---------erA~~La~~~~-----~ 224 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIA----------NRTL---------ERAEELAKKLG-----A 224 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEE----------cCCH---------HHHHHHHHHhC-----C
Confidence 34889999999999999999999999999 899997 6664 47777777665 2
Q ss_pred EEEEeecccCCCcccccchhccCCCcEEEEccCChH
Q 002073 651 NIEALQNRVGPETENVFDDTFWENITCVINALDNVN 686 (972)
Q Consensus 651 ~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~ 686 (972)
++..+.+ + ..++..+|+||.|+..+.
T Consensus 225 ~~~~l~e--------l--~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 225 EAVALEE--------L--LEALAEADVVISSTSAPH 250 (414)
T ss_pred eeecHHH--------H--HHhhhhCCEEEEecCCCc
Confidence 3322221 1 356789999999986543
No 143
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.13 E-value=0.19 Score=56.22 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=44.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEE
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 250 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V 250 (972)
+++.+|+|+|+||+|..|+..|+..|+++|+|++.+.- ...|++.+++.+.+..+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCcee
Confidence 56789999999999999999999999999999874210 113666666666655554333
No 144
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.12 E-value=0.11 Score=61.25 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=32.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+++++|+|+|+|.+|.++++.|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~------~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA------KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 568999999999999999999999998 899998754
No 145
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.02 E-value=0.062 Score=47.97 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=38.8
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhC
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 647 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~in 647 (972)
||+|||+|.+|+|+|..|+..|. +++|+++..- ++ ......=+..+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~------~vtli~~~~~--------~~---~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK------EVTLIERSDR--------LL---PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS------EEEEEESSSS--------SS---TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc------EEEEEeccch--------hh---hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999997 8999875432 11 1333344455566666654
No 146
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.91 E-value=0.12 Score=51.67 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+..++++|+|+|++|..+++.|+..|. ..++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~-----~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA-----AKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCC
Confidence 457899999999999999999999885 588888744
No 147
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.90 E-value=0.12 Score=60.79 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=52.9
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
.+.+.+|+|+|+||.|..++++|...|++.|+++..+ ..||+..++.+ +...+....
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~----~~~~~~~~~ 234 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAF----RNASAHYLS 234 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHh----cCCeEecHH
Confidence 3677899999999999999999999999999997642 12555544443 212222111
Q ss_pred cCCChhhhcCCceEEEcCCC
Q 002073 255 SKLTKEQLSDFQAVVFTDIS 274 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~ 274 (972)
++ .+.+.++|+||.|+.+
T Consensus 235 -~l-~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 235 -EL-PQLIKKADIIIAAVNV 252 (414)
T ss_pred -HH-HHHhccCCEEEECcCC
Confidence 11 3568899999999865
No 148
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.87 E-value=0.093 Score=61.70 Aligned_cols=77 Identities=17% Similarity=0.329 Sum_probs=53.2
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
..+.+++|+|||+|+.|..++++|+..|+ .+|+|+. |. ..|++.+++.+. ..
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~-----~~I~V~n----------Rt---------~~ra~~La~~~~----~~ 228 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAP-----KQIMLAN----------RT---------IEKAQKITSAFR----NA 228 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEC----------CC---------HHHHHHHHHHhc----CC
Confidence 34678999999999999999999999999 7999984 32 135555555432 11
Q ss_pred EEEEeecccCCCcccccchhccCCCcEEEEccCCh
Q 002073 651 NIEALQNRVGPETENVFDDTFWENITCVINALDNV 685 (972)
Q Consensus 651 ~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~ 685 (972)
.+..+. +. ...+.++|+||+|+-..
T Consensus 229 ~~~~~~--------~l--~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 229 SAHYLS--------EL--PQLIKKADIIIAAVNVL 253 (414)
T ss_pred eEecHH--------HH--HHHhccCCEEEECcCCC
Confidence 221111 11 24567899999998543
No 149
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.83 E-value=0.78 Score=43.43 Aligned_cols=87 Identities=24% Similarity=0.346 Sum_probs=59.7
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCC-h
Q 002073 181 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT-K 259 (972)
Q Consensus 181 VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~-~ 259 (972)
|+|+|+|.+|.++++.|...| ..++++|.+.- + .+.+.+.. +.++.++.+ +
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 789999999999999999955 68999996541 1 23333333 334445443 2
Q ss_pred h-----hhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeE
Q 002073 260 E-----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (972)
Q Consensus 260 e-----~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI 295 (972)
+ .+.+++.||++..+.+....+-..+++.++.++.|
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE
Confidence 2 45678889998888888888888999876444443
No 150
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.77 E-value=0.22 Score=56.62 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=89.3
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEe
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~ 655 (972)
++|.|||+|.+|+.++..|+..|. .+++.|.+.=.... .+.......+.+.+..+. ....
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~------~V~l~D~~~~~~~~------------~~~~i~~~~~~~~~~~~~--~~~~ 67 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL------DVVAWDPAPGAEAA------------LRANVANAWPALERQGLA--PGAS 67 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHH------------HHHHHHHHHHHHHHcCCC--hhhH
Confidence 579999999999999999999998 99999865421111 001111111111111110 0011
Q ss_pred ecccCCCcccccchhccCCCcEEEEccC-ChHHHHHHhhhhhcccc--ceEecccCCccce-eEEEeCcccCccCCCCCC
Q 002073 656 QNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGASRDP 731 (972)
Q Consensus 656 ~~~v~~~~e~i~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~k--Pli~sgt~G~~G~-~~viip~~t~~y~~~~dp 731 (972)
..++...+ + + .+-+.++|+|+.|+- +.+.+..+-......-. -+|.+.|.+..-. ..-...+-.-+.+...-.
T Consensus 68 ~~~i~~~~-~-l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hffn 144 (321)
T PRK07066 68 PARLRFVA-T-I-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFN 144 (321)
T ss_pred HhhceecC-C-H-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCC
Confidence 11222111 1 1 234689999999865 55556544333333322 2777777664221 000011111122221122
Q ss_pred CCCCCCCccccCCCCChhhHHHHHHHHhhhcccCChhhH
Q 002073 732 PEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (972)
Q Consensus 732 ~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~ 770 (972)
|..-.|+.=+-.-|....-++.+++++++. .++.|-.+
T Consensus 145 P~~~~pLVEVv~g~~T~~e~~~~~~~f~~~-lGk~pV~v 182 (321)
T PRK07066 145 PVYLLPLVEVLGGERTAPEAVDAAMGIYRA-LGMRPLHV 182 (321)
T ss_pred ccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCEeEec
Confidence 233456655656778888899999998876 55545433
No 151
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.25 Score=53.35 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=66.0
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEe
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~ 655 (972)
++++|+|+|-+|..+|+.|+..|- ++++||.|.- .+.+.+.. .....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~------~Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v 49 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH------NVVLIDRDEE----------------------RVEEFLAD---ELDTHVV 49 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC------ceEEEEcCHH----------------------HHHHHhhh---hcceEEE
Confidence 479999999999999999999996 8899987651 11111111 1122333
Q ss_pred ecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhc-cccceEecc
Q 002073 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY-FQKPLLESG 706 (972)
Q Consensus 656 ~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~-~~kPli~sg 706 (972)
...-+ ....+.+.-.+++|+++-++++-..-..+...... ++.|-+.+-
T Consensus 50 ~gd~t--~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 50 IGDAT--DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred EecCC--CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 32222 23445455578999999999997777766666655 788877543
No 152
>PRK04148 hypothetical protein; Provisional
Probab=93.65 E-value=0.57 Score=46.62 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=66.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
+.+|++||+| .|..+|+.|...|. .|+.+|-+.- .++ ..++. .+++..+++
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~----~a~~~----~~~~v~dDl 67 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVE----KAKKL----GLNAFVDDL 67 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHH----HHHHh----CCeEEECcC
Confidence 4689999999 99999999999996 8888885331 222 22222 234444444
Q ss_pred ---ChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEe
Q 002073 258 ---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKA 297 (972)
Q Consensus 258 ---~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a 297 (972)
+.+...++|+|..+..+.+.+.-+-+++++.+ .+++..
T Consensus 68 f~p~~~~y~~a~liysirpp~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 68 FNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred CCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 44678899999999999999999999999999 766643
No 153
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.64 E-value=0.17 Score=56.55 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=53.0
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
..++++|+||||.+..++..|+..|+ .+|+|++.+ ..|++.+++.+.+..+.+...
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~ 180 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA-----KRITVVNRT-------------------RERAEELADLFGELGAAVEAA 180 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEeCC-------------------HHHHHHHHHHhhhcccccccc
Confidence 46889999999999999999999999 799998422 257888888887776522211
Q ss_pred EeecccCCCcccccchhccCCCcEEEEcc
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINAL 682 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~al 682 (972)
... +.+. .+.+|+||||+
T Consensus 181 ~~~-----~~~~------~~~~dliINaT 198 (283)
T COG0169 181 ALA-----DLEG------LEEADLLINAT 198 (283)
T ss_pred ccc-----cccc------ccccCEEEECC
Confidence 111 1110 11689999996
No 154
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.61 E-value=0.41 Score=53.86 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=28.8
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 479999999999999999999997 78898854
No 155
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.44 E-value=0.18 Score=56.53 Aligned_cols=83 Identities=10% Similarity=0.140 Sum_probs=53.4
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEE
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I 652 (972)
+++++++|+|+||.+..++-.|+..|+ .+|+|++.+. + ...|++.+++.+....+ ..+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-----~~i~i~nRt~---------------~-~~~ka~~la~~~~~~~~-~~~ 179 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-----KEIKLFNRRD---------------E-FFDKALAFAQRVNENTD-CVV 179 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc---------------c-HHHHHHHHHHHhhhccC-ceE
Confidence 466799999999999999999999999 8999986331 0 23577777777654322 222
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEcc
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~al 682 (972)
.... +.. ...+. +-..++|+||||+
T Consensus 180 ~~~~--~~~--~~~l~-~~~~~aDivINaT 204 (288)
T PRK12749 180 TVTD--LAD--QQAFA-EALASADILTNGT 204 (288)
T ss_pred EEec--hhh--hhhhh-hhcccCCEEEECC
Confidence 2211 110 00010 1235789999986
No 156
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.30 E-value=0.25 Score=57.26 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=60.5
Q ss_pred EEEEcCChHHHHHHHHHHHhcCC-EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 002073 181 ILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (972)
Q Consensus 181 VlIvG~gGlG~EiaKNLvLaGVg-~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~~ 259 (972)
|+|+|+|.+|..+++.|+..+-- +|++.|.+. .|++...+.+ ....+....-++++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 79999999999999999999854 899988422 2444433333 23344444444432
Q ss_pred -----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEE
Q 002073 260 -----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (972)
Q Consensus 260 -----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~ 296 (972)
++++++|+||.|..+. ....+-+.|.+.+ +.+|.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g--~~yvD 96 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAG--VHYVD 96 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhC--CCeec
Confidence 4688999999998766 6668899999999 88887
No 157
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.30 E-value=0.3 Score=54.72 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=41.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHH
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 243 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~e 243 (972)
+++++|+|+|+||.+..|+-.|+..|+++|+|++.+. + ...||+..++++.+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~--~~~ka~~la~~~~~ 173 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E--FFDKALAFAQRVNE 173 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c--HHHHHHHHHHHhhh
Confidence 5677999999999999999999999999999998421 0 13477777777654
No 158
>PLN00203 glutamyl-tRNA reductase
Probab=93.17 E-value=0.19 Score=60.74 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=52.0
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
|.+.+|+|+|+|++|..++++|...|+..|++++.+ ..|++..++.+ +.+.+.+..-
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~ 320 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL 320 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH
Confidence 567899999999999999999999999999998742 12444433332 3333333221
Q ss_pred CCChhhhcCCceEEEcCC
Q 002073 256 KLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~ 273 (972)
.-..+.+.++|+||.|+.
T Consensus 321 ~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 321 DEMLACAAEADVVFTSTS 338 (519)
T ss_pred hhHHHHHhcCCEEEEccC
Confidence 111356789999999865
No 159
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.11 E-value=0.09 Score=54.74 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=75.0
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCccc---ccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF---LFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQf---Lf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
||.|||+|.+|..++-.+++.|. +++++|.+.-.....-+.+ |=+..+-|+.....+...+.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~------ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS------ 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE------
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc------
Confidence 68999999999999999999998 9999998653322111100 00000112222222233332222
Q ss_pred EeecccCCCcccccchhccCCCcEEEEccC-ChHHHHHHhhhhhcc--ccceEecccCCccce-eEEEeCcccCccCCCC
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYF--QKPLLESGTLGAKCN-TQMVIPHLTENYGASR 729 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~--~kPli~sgt~G~~G~-~~viip~~t~~y~~~~ 729 (972)
. .. + + .+. .++|+||.|+- +.+.++-+-..-... .--+|-+.|.+..-. ..-.+++-.-+.+..-
T Consensus 69 ~-~~----d----l-~~~-~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf 137 (180)
T PF02737_consen 69 F-TT----D----L-EEA-VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHF 137 (180)
T ss_dssp E-ES----S----G-GGG-CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE
T ss_pred c-cc----C----H-HHH-hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEec
Confidence 1 11 1 1 123 38999999875 555555333322221 112333333332110 0000000000111111
Q ss_pred CCCCCCCCCccccCCCCChhhHHHHHHHHhhhc
Q 002073 730 DPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGL 762 (972)
Q Consensus 730 dp~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~l 762 (972)
-.|....|+.=+-.-|...+-+++|++++++.+
T Consensus 138 ~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~ 170 (180)
T PF02737_consen 138 FNPPHLMPLVEVVPGPKTSPETVDRVRALLRSL 170 (180)
T ss_dssp -SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHT
T ss_pred ccccccCceEEEeCCCCCCHHHHHHHHHHHHHC
Confidence 112234566667778889999999999987765
No 160
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.09 E-value=0.38 Score=54.60 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=53.9
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCC-EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCC-EEEEee
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV-VLSTLT 254 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg-~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V-~V~~~~ 254 (972)
+..+|.|+|+|.+|+.+|-.|+..|+- +|.|+|- -..+++..+.-|+...|.. .+....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~ 65 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYA 65 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEe
Confidence 346999999999999999999999985 7999984 1235555556666665431 233333
Q ss_pred cCCChhhhcCCceEEEcCC
Q 002073 255 SKLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~ 273 (972)
+ +.+.+++.|+||.+..
T Consensus 66 ~--~~~~~~~adivIitag 82 (315)
T PRK00066 66 G--DYSDCKDADLVVITAG 82 (315)
T ss_pred C--CHHHhCCCCEEEEecC
Confidence 3 2345899999998754
No 161
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.06 E-value=0.72 Score=51.95 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=52.2
Q ss_pred EEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCC---CEEEEeecC
Q 002073 181 ILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA---VVLSTLTSK 256 (972)
Q Consensus 181 VlIvG~gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~---V~V~~~~~~ 256 (972)
|.|||+|.+|+.+|-.|+..|+ .+++|+|.+ +.|++..+..|.+..+. +.+... .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~-~- 59 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG-G- 59 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC-C-
Confidence 5799999999999999999997 679999952 23566666677766653 344321 2
Q ss_pred CChhhhcCCceEEEcCC
Q 002073 257 LTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~ 273 (972)
+.+.+.++|+||.|..
T Consensus 60 -~~~~l~~aDiVIitag 75 (300)
T cd00300 60 -DYADAADADIVVITAG 75 (300)
T ss_pred -CHHHhCCCCEEEEcCC
Confidence 2457889999999865
No 162
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.98 E-value=0.028 Score=58.28 Aligned_cols=93 Identities=17% Similarity=0.293 Sum_probs=55.8
Q ss_pred HHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCC
Q 002073 570 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 649 (972)
Q Consensus 570 q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~ 649 (972)
...|.+++|.|||.|.||.++++.|.-.|+ +++.+|...-..... .+.|-.. .-+.+.+ +.
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~~~~~~~~~--------~~~~~~~-~~l~ell----~~ 91 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM------RVIGYDRSPKPEEGA--------DEFGVEY-VSLDELL----AQ 91 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-------EEEEEESSCHHHHHH--------HHTTEEE-SSHHHHH----HH
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc------eeEEecccCChhhhc--------cccccee-eehhhhc----ch
Confidence 346889999999999999999999999998 899988765432200 0001000 0111111 12
Q ss_pred cEEEEeecccCCCcccccchhccCCCc---EEEEc
Q 002073 650 LNIEALQNRVGPETENVFDDTFWENIT---CVINA 681 (972)
Q Consensus 650 ~~I~~~~~~v~~~~e~i~~~~f~~~~D---vVi~a 681 (972)
..|....-..+++|..+++.++++.+- ++||.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 455555556667777777776665543 56664
No 163
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=92.88 E-value=0.36 Score=54.63 Aligned_cols=76 Identities=24% Similarity=0.265 Sum_probs=53.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+...+|+|+|+|.+|..++++|...|+..|+++|.+. .|++..++.+ +. .+... +
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~----g~-~~~~~-~ 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKEL----GG-NAVPL-D 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHc----CC-eEEeH-H
Confidence 6789999999999999999999999999999998532 2444444443 11 11111 1
Q ss_pred CCChhhhcCCceEEEcCCCHHH
Q 002073 256 KLTKEQLSDFQAVVFTDISLDK 277 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~~~~~ 277 (972)
+ ..+.+.++|+||.|..+...
T Consensus 231 ~-~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 231 E-LLELLNEADVVISATGAPHY 251 (311)
T ss_pred H-HHHHHhcCCEEEECCCCCch
Confidence 1 12456789999999875544
No 164
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.81 E-value=0.79 Score=51.10 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=29.7
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF------DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999997 899998653
No 165
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.65 E-value=0.39 Score=47.84 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=31.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
+...+|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 55789999999999999999999998778999885
No 166
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=92.61 E-value=0.34 Score=47.29 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=59.3
Q ss_pred cEEEEcC-CcchHHHHHHHHH-ccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 577 KVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 577 kVlIVGa-GgiG~e~lknLa~-~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
||.|+|+ |-.|.++++.+.. .|+ --.-.+|... |. +-..|+|. .+..-...+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-----~lv~~v~~~~---~~------~~g~d~g~--------~~~~~~~~~~v-- 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-----ELVGAVDRKP---SA------KVGKDVGE--------LAGIGPLGVPV-- 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-----EEEEEEETTT---ST------TTTSBCHH--------HCTSST-SSBE--
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC---cc------cccchhhh--------hhCcCCccccc--
Confidence 7999999 9999999999998 666 2234444332 00 11235541 11111111111
Q ss_pred eecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCcc
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 711 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~ 711 (972)
..+. ++.++.+|+||+.+ ++++-...-++|.++++|++ .||.|+.
T Consensus 58 -----~~~l-----~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~V-iGTTG~~ 102 (124)
T PF01113_consen 58 -----TDDL-----EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLV-IGTTGFS 102 (124)
T ss_dssp -----BS-H-----HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEE-EE-SSSH
T ss_pred -----chhH-----HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEE-EECCCCC
Confidence 1122 24455699999999 88888888899999999999 5777763
No 167
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.57 E-value=0.76 Score=49.62 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=67.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC-
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL- 257 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l- 257 (972)
.+++|+|+|-+|..+|++|+..|- .++++|.+.- .+.+.++ ....+.++..+-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~----------------------~~~~~~~---~~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE----------------------RVEEFLA---DELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH----------------------HHHHHhh---hhcceEEEEecCC
Confidence 378999999999999999999997 6777775331 1112222 112333333332
Q ss_pred Ch-----hhhcCCceEEEcCCCHHHHHHHHHHHHh-cCCCceeEEeeecce-eEEEEEEcC
Q 002073 258 TK-----EQLSDFQAVVFTDISLDKAIEFDDFCHN-HQPAISFIKAEVRGL-FGSVFCDFG 311 (972)
Q Consensus 258 ~~-----e~l~~fdvVV~~~~~~~~~~~ln~~c~~-~~~~IpfI~a~~~G~-~G~vf~dfg 311 (972)
++ --+.++|+||.+..+......+-.+..+ .+ +|-+.+.+..- +..++...|
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g 113 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLG 113 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcC
Confidence 22 2366889999988876666666666655 78 88887776543 444544444
No 168
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.41 E-value=0.11 Score=57.94 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=29.8
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
++|.|||+|.+|+.++.+|+..|. +++++|.|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~------~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF------QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC------cEEEEeCCH
Confidence 479999999999999999999997 899998764
No 169
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.40 E-value=0.43 Score=57.31 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=66.9
Q ss_pred HHHHHHhcCcEEEEcCC-cchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhh
Q 002073 568 KLQKKLEDAKVFIVGSG-ALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI 646 (972)
Q Consensus 568 ~~q~kL~~~kVlIVGaG-giG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~i 646 (972)
....-+.+++|+|-|+| .||+|+++.++..+. .+|.++|.|. .|-..+...++..
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~E-------------------~~~~~i~~el~~~ 298 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRDE-------------------YKLYLIDMELREK 298 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCch-------------------HHHHHHHHHHHhh
Confidence 34677889999999985 599999999999999 8999997665 4455667788888
Q ss_pred CCCcEEEEeecccCCCcccccchhccCC--CcEEEEc
Q 002073 647 NPRLNIEALQNRVGPETENVFDDTFWEN--ITCVINA 681 (972)
Q Consensus 647 nP~~~I~~~~~~v~~~~e~i~~~~f~~~--~DvVi~a 681 (972)
.|..++..+-..+... +.+ ...+++ .|+|+-|
T Consensus 299 ~~~~~~~~~igdVrD~-~~~--~~~~~~~kvd~VfHA 332 (588)
T COG1086 299 FPELKLRFYIGDVRDR-DRV--ERAMEGHKVDIVFHA 332 (588)
T ss_pred CCCcceEEEecccccH-HHH--HHHHhcCCCceEEEh
Confidence 8888888888877642 222 233455 8888887
No 170
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.32 E-value=0.53 Score=53.24 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=52.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCC---CEEEEeec
Q 002073 180 NILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA---VVLSTLTS 255 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~---V~V~~~~~ 255 (972)
+|.|||+|.+|+.+|-.|+..|+ +.+.|+|- -+.+|+.-+--|+...+. ..++...+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEEC
Confidence 68999999999999999999998 67999984 123455555555554432 22333333
Q ss_pred CCChhhhcCCceEEEcCC
Q 002073 256 KLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~ 273 (972)
+.+.+++.|+||.|..
T Consensus 62 --~y~~~~~aDivvitaG 77 (307)
T cd05290 62 --DYDDCADADIIVITAG 77 (307)
T ss_pred --CHHHhCCCCEEEECCC
Confidence 3567899999998754
No 171
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.31 E-value=0.31 Score=57.39 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=33.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
.+.+.+|+|+|+|.+|..+++.|...|+..++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 377899999999999999999999999999999875
No 172
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.26 E-value=0.37 Score=54.29 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=49.8
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCC----CcE
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINP----RLN 651 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP----~~~ 651 (972)
.||.|||+|++|+.++..|+..|+. .+|+++|.+. .|++..+..+.+..+ ...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~----~ei~l~D~~~-------------------~~~~~~a~dL~~~~~~~~~~~~ 57 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA----DELVLIDINE-------------------EKAEGEALDLEDALAFLPSPVK 57 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCCc-------------------chhhHhHhhHHHHhhccCCCeE
Confidence 3799999999999999999999982 4899997542 344555555544431 122
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccCC
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALDN 684 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn 684 (972)
+.. .. .+-+.++|+||+|...
T Consensus 58 i~~-----~~-------~~~l~~aDIVIitag~ 78 (306)
T cd05291 58 IKA-----GD-------YSDCKDADIVVITAGA 78 (306)
T ss_pred EEc-----CC-------HHHhCCCCEEEEccCC
Confidence 221 11 1225799999999864
No 173
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.24 E-value=0.19 Score=51.92 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=30.5
Q ss_pred HHhcCcEEEEcCCcc-hHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGAL-GCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgi-G~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|.+++|+|||+|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~------~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA------TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC------EEEEEEC
Confidence 478999999999985 8889999999998 6888863
No 174
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=92.19 E-value=0.24 Score=53.20 Aligned_cols=83 Identities=27% Similarity=0.412 Sum_probs=59.1
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 573 L~~~kVlIVG-aGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
+..++++++| |||||-++.|.|+.-|+ ..+.|.| ..| | ..+...|+++||..+
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi-----k~~~i~~--~~E--n-----------------~~a~akL~ai~p~~~ 56 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI-----KVLVIDD--SEE--N-----------------PEAIAKLQAINPSVS 56 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc-----hheeehh--hhh--C-----------------HHHHHHHhccCCCce
Confidence 4577888887 89999999999999999 4544443 221 1 235567899999999
Q ss_pred EEEeecccCC--Ccccccch--hccCCCcEEEEc
Q 002073 652 IEALQNRVGP--ETENVFDD--TFWENITCVINA 681 (972)
Q Consensus 652 I~~~~~~v~~--~~e~i~~~--~f~~~~DvVi~a 681 (972)
+..++-.+.. +.+..|+. .-+...|++||.
T Consensus 57 v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 57 VIFIKCDVTNRGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred EEEEEeccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence 9999888874 12222321 236788999995
No 175
>PLN02602 lactate dehydrogenase
Probab=92.14 E-value=0.45 Score=54.79 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=51.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcC---CCEEEEee
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN---AVVLSTLT 254 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp---~V~V~~~~ 254 (972)
.+|.|+|+|.+|+.+|-.|+..|+ .++.|+|-. +.+++..+.-|+...+ .+.|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN-------------------PDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------CchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 579999842 2244444444544433 3444431
Q ss_pred cCCChhhhcCCceEEEcCC
Q 002073 255 SKLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~ 273 (972)
-+.+.+++.|+||.|..
T Consensus 98 --~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 --TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred --CCHHHhCCCCEEEECCC
Confidence 13456899999999854
No 176
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=92.12 E-value=0.36 Score=51.89 Aligned_cols=63 Identities=29% Similarity=0.462 Sum_probs=50.2
Q ss_pred hhcCeEEEE-cCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 176 LFASNILVS-GMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 176 L~~s~VlIv-G~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
+.+++|+++ |+||+|-+.+|.|...|++.+.|.|.. +| -.+..+|++.||.++|..++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence 457788887 599999999999999999888876631 11 24567899999999999988
Q ss_pred cCCCh
Q 002073 255 SKLTK 259 (972)
Q Consensus 255 ~~l~~ 259 (972)
-+++.
T Consensus 62 ~DVt~ 66 (261)
T KOG4169|consen 62 CDVTN 66 (261)
T ss_pred ecccc
Confidence 77653
No 177
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.08 E-value=0.12 Score=55.80 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=34.3
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCc--eEEEEcCC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQG--KLTITDDD 613 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g--~i~iiD~D 613 (972)
.+++.+|+|+|+|+.|+.+++.|+..|+ . +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-----~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-----KPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-----CcceEEEEeCC
Confidence 4778899999999999999999999999 6 99999976
No 178
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.98 E-value=0.66 Score=52.29 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=29.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
..+|+|+|+|++|+-++-.|..+|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3479999999999999999999996 79998864
No 179
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.96 E-value=0.36 Score=51.65 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=68.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
.|.+++|+|||.|.+|..=++.|+.+|. +++|+-.+. + +.-..+.+ .+ +
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga------~v~Vvs~~~-~-----------------~el~~~~~----~~---~ 57 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA------DVTVVSPEF-E-----------------PELKALIE----EG---K 57 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC------EEEEEcCCc-c-----------------HHHHHHHH----hc---C
Confidence 4678899999999999999999999997 999985554 1 11111111 11 1
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecc
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 706 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sg 706 (972)
|+.+... |+...+..+++||-|+|+.+--..+-+.|..+++|+-...
T Consensus 58 i~~~~~~--------~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 58 IKWIERE--------FDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred cchhhcc--------cChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 2222222 3334456699999999999999999999999999876433
No 180
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.94 E-value=0.51 Score=53.50 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=51.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCC-EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCC---CEEEEe
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA---VVLSTL 253 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg-~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~---V~V~~~ 253 (972)
..+|.|+|+|.+|+.+|-.|+..|.. ++.|+|.. +.+++..+.-|+...|+ ..|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 45899999999999999999999984 69999842 12444445555555532 234322
Q ss_pred ecCCChhhhcCCceEEEcCC
Q 002073 254 TSKLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~ 273 (972)
. +.+.+++.|+||.|..
T Consensus 64 -~--dy~~~~~adivvitaG 80 (312)
T cd05293 64 -K--DYSVTANSKVVIVTAG 80 (312)
T ss_pred -C--CHHHhCCCCEEEECCC
Confidence 2 3345899999998654
No 181
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.89 E-value=0.43 Score=56.90 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=67.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
.|++++|+|||.|.++..=++.|...|. +|+|+-.+. .+ ++ .+ +.. .-+
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga------~v~visp~~------------~~-~~--------~~-l~~---~~~ 57 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA------RLTVNALAF------------IP-QF--------TA-WAD---AGM 57 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCCC------------CH-HH--------HH-HHh---CCC
Confidence 5789999999999999999999999997 899985432 11 10 11 111 124
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceE
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 703 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli 703 (972)
|+.+...+. ...+.++++||.|+|+.+.-..+...|...++++-
T Consensus 58 i~~~~~~~~--------~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 58 LTLVEGPFD--------ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred EEEEeCCCC--------hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 444444332 34567899999999999999999999998888754
No 182
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.86 E-value=0.44 Score=53.48 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=68.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHh-cCCCEEEEeecC-C
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSK-L 257 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eL-Np~V~V~~~~~~-l 257 (972)
+|.|||+|-+|..+|++|...|. .++++|.+.-....+.. .|-..+....+.++.. ++++-+...... .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~--------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE--------EGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH--------CCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 68999876432222211 1211111112222222 355555555442 1
Q ss_pred Chh-------hhcCCceEEEcC-CCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 258 TKE-------QLSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 258 ~~e-------~l~~fdvVV~~~-~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
..+ .+..-++||++. .+.....++.+.+++.+ +.|+.+.+.|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g--~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG--IHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC--CEEEeCCCCcC
Confidence 111 233346777764 35566667888899999 88888777664
No 183
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.54 E-value=0.56 Score=52.32 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.5
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
++|.|||+|.+|..++.+|++.|. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 679999999999999999999998 89999865
No 184
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.48 E-value=0.96 Score=50.21 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.+|.|||+|-+|..+|..++.+|. .++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 579999999999999999999998 899998653
No 185
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.34 E-value=0.75 Score=51.44 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=30.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCcc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 213 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V 213 (972)
++|.|||+|..|..||.+++++|. .++++|.+.-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 489999999999999999999997 7999997543
No 186
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.25 E-value=0.24 Score=53.57 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=35.3
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCC--EEEEEeCCc
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVK--SVTLHDEGT 212 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg--~itLvD~d~ 212 (972)
.+++.+|+|+|+||.|..||+.|...|++ +|+|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57888999999999999999999999999 999999763
No 187
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.20 E-value=0.22 Score=56.69 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=60.3
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccc-cCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEK-SNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~-SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
.|..++|.|||+|.||+.+++.+.-.|+ ++...|.=.-+. .... |-. ....|.++-+..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm------~v~~~d~~~~~~~~~~~----------~~~----~~~~Ld~lL~~s 198 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM------KVIGYDPYSPRERAGVD----------GVV----GVDSLDELLAEA 198 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC------eEEEECCCCchhhhccc----------cce----ecccHHHHHhhC
Confidence 6789999999999999999999999999 888888622211 1100 000 011233333445
Q ss_pred EEEEeecccCCCcccccchhccCCC---cEEEEc
Q 002073 651 NIEALQNRVGPETENVFDDTFWENI---TCVINA 681 (972)
Q Consensus 651 ~I~~~~~~v~~~~e~i~~~~f~~~~---DvVi~a 681 (972)
.|.....-++++|..+++...+... -++|||
T Consensus 199 Div~lh~PlT~eT~g~i~~~~~a~MK~gailIN~ 232 (324)
T COG0111 199 DILTLHLPLTPETRGLINAEELAKMKPGAILINA 232 (324)
T ss_pred CEEEEcCCCCcchhcccCHHHHhhCCCCeEEEEC
Confidence 6777777778888888777666544 377776
No 188
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.12 E-value=0.6 Score=51.67 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=60.0
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
+..++++|-|| +|||-|+++.||+-|. +++++-.+ +.|-+.+++.+.+.+ .++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~------~liLvaR~-------------------~~kL~~la~~l~~~~-~v~ 57 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY------NLILVARR-------------------EDKLEALAKELEDKT-GVE 57 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCc-------------------HHHHHHHHHHHHHhh-Cce
Confidence 45678999996 9999999999999998 88887322 467788889998877 788
Q ss_pred EEEeecccCCCcc--cccchhc--cCCCcEEEEc
Q 002073 652 IEALQNRVGPETE--NVFDDTF--WENITCVINA 681 (972)
Q Consensus 652 I~~~~~~v~~~~e--~i~~~~f--~~~~DvVi~a 681 (972)
++.+..+++..++ .++++.. ....|+.||+
T Consensus 58 v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 58 VEVIPADLSDPEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred EEEEECcCCChhHHHHHHHHHHhcCCcccEEEEC
Confidence 8888887775332 1221111 1257777776
No 189
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.00 E-value=0.63 Score=46.53 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=51.4
Q ss_pred CcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc--EE
Q 002073 576 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL--NI 652 (972)
Q Consensus 576 ~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~--~I 652 (972)
.||.|||+ |.+|+.++-.|++.|++ .+|.|+|.+. .|++..+.-+.+..+.. ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~----~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~ 57 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA----DEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPV 57 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS----SEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CceEEeccCc-------------------ccceeeehhhhhhhhhccccc
Confidence 37999999 99999999999999994 5699987442 25555555555544333 22
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEccCC
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINALDN 684 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn 684 (972)
.... + + .+-+++.|+||.+...
T Consensus 58 ~i~~---~--~-----~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 58 RITS---G--D-----YEALKDADIVVITAGV 79 (141)
T ss_dssp EEEE---S--S-----GGGGTTESEEEETTST
T ss_pred cccc---c--c-----ccccccccEEEEeccc
Confidence 2222 1 1 1336789999988643
No 190
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.93 E-value=0.92 Score=47.42 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=51.7
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 175 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 175 kL~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
.+++++|+|+|. |++|..+++.|+..| .++++++.+ ..|++...+.+.+.. .+.+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467889999996 999999999999988 489988643 235666666665332 2333332
Q ss_pred ec-CCC--hhhhcCCceEEEcCC
Q 002073 254 TS-KLT--KEQLSDFQAVVFTDI 273 (972)
Q Consensus 254 ~~-~l~--~e~l~~fdvVV~~~~ 273 (972)
.. +.. .+.+.++|+||.+..
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCC
Confidence 11 111 145678888887764
No 191
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=90.84 E-value=0.2 Score=40.48 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=19.6
Q ss_pred hccccchHHHHHHHHHhhHHHHh
Q 002073 805 KEKCEIFQDCITWARLKFEDYFS 827 (972)
Q Consensus 805 ~~~~~~~~~ci~~a~~~f~~~f~ 827 (972)
...|.+.+.||.||+.+|+.+|.
T Consensus 23 r~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 23 RNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCchHHHHHHHHHHHHHhC
Confidence 46799999999999999999983
No 192
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.80 E-value=0.46 Score=45.98 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=32.4
Q ss_pred hccCCCcEEEEccCChHHHHHHhhhhhccccceEeccc-CCccceeEEEeC
Q 002073 670 TFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT-LGAKCNTQMVIP 719 (972)
Q Consensus 670 ~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt-~G~~G~~~viip 719 (972)
+.+.+.|+||.|+++-.++.+.... ...++++|+... .-....+..++|
T Consensus 62 ~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~~~~~~~~p 111 (121)
T PF01118_consen 62 EELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLDDDVPYGLP 111 (121)
T ss_dssp HHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTSTTSEEE-H
T ss_pred hHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCCCCCCEEeC
Confidence 3358999999999998888877766 777888886433 323333444444
No 193
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.76 E-value=1.1 Score=47.38 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=32.0
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
.|++++|+|+|+|.+|..+|++|...|. +|+++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4678899999999999999999999998 77788754
No 194
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.72 E-value=1.5 Score=40.03 Aligned_cols=78 Identities=14% Similarity=0.262 Sum_probs=48.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC--CEEEEE-eCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGV--KSVTLH-DEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGV--g~itLv-D~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
+|.|+|+|.+|..+++.|+..|+ ..|+++ +.+ ....+++.+..+ +.+.. .+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-----------------------~~~~~~~~~~~~-~~~~~--~~ 54 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-----------------------PEKAAELAKEYG-VQATA--DD 54 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-----------------------HHHHHHHHHHCT-TEEES--EE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-----------------------HHHHHHHHHhhc-ccccc--CC
Confidence 68999999999999999999994 344433 321 112333444444 22221 11
Q ss_pred CChhhhcCCceEEEcCCCHHHHHHHHHH
Q 002073 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~~~~~~~ln~~ 284 (972)
..+.++..|+||+|..+......+.++
T Consensus 55 -~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 55 -NEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp -HHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred -hHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 345677899999999877666666666
No 195
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.69 E-value=0.69 Score=52.57 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=32.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
.+.+|.|+|+|.+|..++-.|++.|+..+.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 46799999999999999999999998889999963
No 196
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.66 E-value=0.58 Score=52.93 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=49.8
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCC---cEEE
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR---LNIE 653 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~---~~I~ 653 (972)
||.|||+|.+|+.+|-.|++.|++ ++|.|+|- .+.|++.-+.-|.+..+- .+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~----~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~ 57 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF----SEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTK 57 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEE
Confidence 689999999999999999999984 68999973 234555555555554431 1222
Q ss_pred EeecccCCCcccccchhccCCCcEEEEccC
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINALD 683 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~alD 683 (972)
.+. + + .+-++++|+||-+..
T Consensus 58 i~~---~-~------y~~~~~aDivvitaG 77 (307)
T cd05290 58 IRA---G-D------YDDCADADIIVITAG 77 (307)
T ss_pred EEE---C-C------HHHhCCCCEEEECCC
Confidence 222 1 1 133678999988754
No 197
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.41 E-value=0.48 Score=49.31 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=28.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCcc
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 213 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V 213 (972)
+|.|+|+|.+|.-||-.++++|. .++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence 69999999999999999999997 8999997543
No 198
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.39 E-value=0.79 Score=52.21 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=31.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
++..||.|||+|.+|+.++-.+++.|+ .+|+|+|-+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeCCC
Confidence 455799999999999999999999998 4699998543
No 199
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.38 E-value=0.48 Score=53.93 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=63.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCC-----CEEEEe
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA-----VVLSTL 253 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~-----V~V~~~ 253 (972)
++|.|||+|-+|+.+|.+++.+|. .++++|.+.-.... .+.+.....+.+.+..+. -.++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 74 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA------------LRANVANAWPALERQGLAPGASPARLRFV 74 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH------------HHHHHHHHHHHHHHcCCChhhHHhhceec
Confidence 589999999999999999999997 89999975421111 112222233333332211 011211
Q ss_pred ecCCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 254 TSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
+ + -++.+.+.|+|+-+.. +.+.+..+-+-..+.-++=.+|.+.|.|+
T Consensus 75 ~-~-l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l 122 (321)
T PRK07066 75 A-T-IEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGL 122 (321)
T ss_pred C-C-HHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCcc
Confidence 1 1 1256789999998864 55544443332223222234677777765
No 200
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.34 E-value=0.39 Score=53.93 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=61.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHH-h-cCCCEEEEeecCC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE-L-NNAVVLSTLTSKL 257 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~e-L-Np~V~V~~~~~~l 257 (972)
+|.|||+|..|..+|.+|+..|. .|+++|.+.-....+... |...+.. .+.+.+ + .+++-+...+...
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s-~~~~~~~~~~~dvIi~~vp~~~ 71 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVAN-LRELSQRLSAPRVVWVMVPHGI 71 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCC-HHHHHhhcCCCCEEEEEcCchH
Confidence 69999999999999999999996 788888765332222211 1000000 111111 1 2444444433321
Q ss_pred Chh-------hhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecc
Q 002073 258 TKE-------QLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (972)
Q Consensus 258 ~~e-------~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G 301 (972)
.++ .+..=++||.+.. ......++.+.+.+.+ +.|+.+.+.|
T Consensus 72 ~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g--~~~vda~vsG 121 (298)
T TIGR00872 72 VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG--IHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC--CeEEecCCCC
Confidence 111 1223356776644 3345555566677777 7777776655
No 201
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.34 E-value=1.2 Score=53.09 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=61.2
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 174 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 174 ~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
.-+.+++|+|+|+|+.|..+|+-|...|. .+++.|...... .....++|.+.. + ...
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~------------------~~~~~~~l~~~g--i--~~~ 66 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEE------------------LGEVSNELKELG--V--KLV 66 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCcc------------------chHHHHHHHhCC--C--EEE
Confidence 34567899999999999999999999997 799988543110 001112344332 3 333
Q ss_pred ecCCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEE
Q 002073 254 TSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 296 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~ 296 (972)
.+...++.+.++|+||.+.. +. ...+-..+++.+ ||++.
T Consensus 67 ~~~~~~~~~~~~dlVV~Spgi~~--~~p~~~~a~~~~--i~i~s 106 (458)
T PRK01710 67 LGENYLDKLDGFDVIFKTPSMRI--DSPELVKAKEEG--AYITS 106 (458)
T ss_pred eCCCChHHhccCCEEEECCCCCC--CchHHHHHHHcC--CcEEe
Confidence 33323466788999998753 22 122344567888 88873
No 202
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.32 E-value=0.65 Score=52.72 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=51.2
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc-EEE
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL-NIE 653 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~-~I~ 653 (972)
..||.|||||.+|+.++-.|+..|+. .+|.|+|- .+.|++..+.-+.+..|.. ++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~----~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~ 62 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA----DELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTK 62 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeE
Confidence 46999999999999999999999983 47999874 2345555566666655432 121
Q ss_pred EeecccCCCcccccchhccCCCcEEEEccC
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINALD 683 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~alD 683 (972)
... ++ + +-++++|+||.+..
T Consensus 63 i~~---~~-----~--~~~~~adivIitag 82 (315)
T PRK00066 63 IYA---GD-----Y--SDCKDADLVVITAG 82 (315)
T ss_pred EEe---CC-----H--HHhCCCCEEEEecC
Confidence 111 11 1 23689999988754
No 203
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.26 E-value=0.84 Score=53.86 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=32.6
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+..++|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga------~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA------RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCc
Confidence 578899999999999999999999998 799988664
No 204
>PRK05854 short chain dehydrogenase; Provisional
Probab=90.21 E-value=0.61 Score=52.51 Aligned_cols=35 Identities=17% Similarity=0.416 Sum_probs=29.4
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+++++++|.|+ ||||.++++.|++.|. ++++++.+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~------~Vil~~R~ 47 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA------EVILPVRN 47 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 45788999995 8899999999999997 78877643
No 205
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.05 E-value=1.9 Score=48.53 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=29.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
.+|.|||+|.+|..+|..|+.+|. .|+++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999997 79999854
No 206
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=89.99 E-value=1.1 Score=51.08 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=55.5
Q ss_pred cCeEEEEcCChHHHHHHHHHH-HhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 178 ASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLv-LaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
.++|+|+|+|+.|...++.|. ..|+.+++|++.+ ..|++..++++++..+ +++....+
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~~~- 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAATD- 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeCC-
Confidence 468999999999999999997 5789999998642 2478888888765433 44443321
Q ss_pred CChhhhcCCceEEEcCCC
Q 002073 257 LTKEQLSDFQAVVFTDIS 274 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~ 274 (972)
-++.+.++|+||.|+.+
T Consensus 188 -~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 -PRAAMSGADIIVTTTPS 204 (326)
T ss_pred -HHHHhccCCEEEEecCC
Confidence 24567899999998765
No 207
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.96 E-value=0.95 Score=50.07 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=28.8
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
..++++|+|+|++|..++..|+..|. +++++|.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~------~v~v~~R 148 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC------NVIIANR 148 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 46789999999999999999999886 7888763
No 208
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.94 E-value=0.57 Score=52.26 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=30.8
Q ss_pred HHHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 571 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 571 ~kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
..+.+++|+|.|+ |+||.++++.|+..|. ++++++.+
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~------~vi~~~r~ 49 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA------HVVLAVRN 49 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4467789999995 9999999999999997 77777643
No 209
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.90 E-value=1.6 Score=47.04 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=48.2
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGV---g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
+..+|.|+|+|.+|..+++.|...|. ..+++++... ..|++ .+.+..+ +. ..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~------------------~~~~~----~~~~~~~-~~--~~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSN------------------VEKLD----QLQARYN-VS--TT 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCC------------------HHHHH----HHHHHcC-cE--Ee
Confidence 45689999999999999999998873 2344443210 11322 2222222 22 22
Q ss_pred ecCCChhhhcCCceEEEcCCCHHHHHHHHHH
Q 002073 254 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~ 284 (972)
. + .++.+.+.|+||+|..+......+.++
T Consensus 58 ~-~-~~~~~~~~DiViiavp~~~~~~v~~~l 86 (245)
T PRK07634 58 T-D-WKQHVTSVDTIVLAMPPSAHEELLAEL 86 (245)
T ss_pred C-C-hHHHHhcCCEEEEecCHHHHHHHHHHH
Confidence 1 1 234577899999998765544444443
No 210
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.90 E-value=3.3 Score=46.24 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=29.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
..+|.|+|+|..|..+|.+|+.+|. .|+++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 79999864
No 211
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.78 E-value=1.1 Score=53.49 Aligned_cols=93 Identities=19% Similarity=0.133 Sum_probs=58.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+...+|+|+|.|++|.++|..|...|. +++++|.... ..+....+.|++.+ +.+.. +
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~g--v~~~~--~ 70 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEALG--ATVRL--G 70 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHcC--CEEEE--C
Confidence 457799999999999999999999998 6999986421 12223344555543 44432 2
Q ss_pred CCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeE
Q 002073 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI 295 (972)
.-. +....+|+||.+..-.. ...+-..+++.+ +|++
T Consensus 71 ~~~-~~~~~~D~Vv~s~Gi~~-~~~~~~~a~~~g--i~v~ 106 (480)
T PRK01438 71 PGP-TLPEDTDLVVTSPGWRP-DAPLLAAAADAG--IPVW 106 (480)
T ss_pred CCc-cccCCCCEEEECCCcCC-CCHHHHHHHHCC--Ceec
Confidence 111 13456899998764211 112334567788 8875
No 212
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.75 E-value=1.5 Score=49.02 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
++|.|||+|-+|..+|.+|+.+|. .|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999996 899998643
No 213
>PRK07063 short chain dehydrogenase; Provisional
Probab=89.70 E-value=0.9 Score=49.08 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=44.0
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
++.+++++|.|+ |+||.++++.|+..|. +++++|.+ ..+.+.+++.+...++..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA------AVALADLD-------------------AALAERAAAAIARDVAGA 58 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhccCCc
Confidence 366889999995 8999999999999997 78887632 123444555555444445
Q ss_pred EEEEeecccC
Q 002073 651 NIEALQNRVG 660 (972)
Q Consensus 651 ~I~~~~~~v~ 660 (972)
++..+...++
T Consensus 59 ~~~~~~~Dl~ 68 (260)
T PRK07063 59 RVLAVPADVT 68 (260)
T ss_pred eEEEEEccCC
Confidence 5555555554
No 214
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.68 E-value=1.5 Score=39.09 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=39.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhc
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN 245 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLN 245 (972)
+|+|+|.|.+|+|+|..|...|. ++||++...- ++ ...+..-++.+.++|++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999996 8999986442 11 1233444566677777763
No 215
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.66 E-value=1.2 Score=48.75 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=27.1
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.+|.|||+|.+|..++..|...|. ....++++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~---~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGV---PAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCC---CcceEEEEcC
Confidence 479999999999999999999884 1136677653
No 216
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.60 E-value=1.1 Score=49.84 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=32.8
Q ss_pred cCHHHHHHhhcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 168 YGRETMRRLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 168 ~G~e~q~kL~~s~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
|+...+..+.+++|+|.| .||+|.++|+.|+..|. ++++++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 344444567788999998 58999999999999997 6777653
No 217
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.48 E-value=0.83 Score=47.76 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=52.5
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~------~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~ 78 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA------RVVLVGRD-------------------LERAQKAADSLRARF-GE 78 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhhc-CC
Confidence 457789999996 9999999999999875 78887543 235555555554322 23
Q ss_pred EEEEeecccCCCcccccchhccCCCcEEEEccCCh
Q 002073 651 NIEALQNRVGPETENVFDDTFWENITCVINALDNV 685 (972)
Q Consensus 651 ~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~ 685 (972)
.+.... .. +.+++ .+.+.++|+||+|+...
T Consensus 79 ~~~~~~--~~-~~~~~--~~~~~~~diVi~at~~g 108 (194)
T cd01078 79 GVGAVE--TS-DDAAR--AAAIKGADVVFAAGAAG 108 (194)
T ss_pred cEEEee--CC-CHHHH--HHHHhcCCEEEECCCCC
Confidence 333221 11 11111 24457899999987533
No 218
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.42 E-value=1.2 Score=53.46 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=60.4
Q ss_pred HHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEE
Q 002073 172 TMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLS 251 (972)
Q Consensus 172 ~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~ 251 (972)
+..-+...+|+|+|+|+.|..+|+.|...|. .+++.|.+. .+. .+.+.++ .|.
T Consensus 9 ~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~-------------------~~~---~~~l~~~----gi~ 61 (473)
T PRK00141 9 ALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNE-------------------TAR---HKLIEVT----GVA 61 (473)
T ss_pred hcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCh-------------------HHH---HHHHHhc----CcE
Confidence 3445667899999999999999999999998 899988431 011 1112221 333
Q ss_pred EeecCCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEE
Q 002073 252 TLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 296 (972)
Q Consensus 252 ~~~~~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~ 296 (972)
...+.-.++.+.++|+||.+.. +... ..-..+++++ ||++.
T Consensus 62 ~~~~~~~~~~~~~~d~vV~Spgi~~~~--p~~~~a~~~g--i~v~~ 103 (473)
T PRK00141 62 DISTAEASDQLDSFSLVVTSPGWRPDS--PLLVDAQSQG--LEVIG 103 (473)
T ss_pred EEeCCCchhHhcCCCEEEeCCCCCCCC--HHHHHHHHCC--Cceee
Confidence 3333333456778999998753 2221 2233567888 88774
No 219
>PRK04148 hypothetical protein; Provisional
Probab=89.31 E-value=2.3 Score=42.40 Aligned_cols=92 Identities=12% Similarity=0.180 Sum_probs=66.7
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
++.++++||+| -|.++++.|+.+|. .++.+|.+.- .+ +.+++. .+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~------~ViaIDi~~~-------------------aV----~~a~~~----~~~ 61 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF------DVIVIDINEK-------------------AV----EKAKKL----GLN 61 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC------EEEEEECCHH-------------------HH----HHHHHh----CCe
Confidence 34689999999 99999999999997 9999985431 12 222222 123
Q ss_pred EeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEe
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 704 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~ 704 (972)
+....+...+ .++.+++|+|-..--..+-...+-+.+...+.+++-
T Consensus 62 ~v~dDlf~p~-----~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 62 AFVDDLFNPN-----LEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLII 107 (134)
T ss_pred EEECcCCCCC-----HHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4444433222 356789999999988888899999999999998873
No 220
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.29 E-value=0.71 Score=51.83 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=61.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHh-cCCCEEEEeecC-C
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSK-L 257 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eL-Np~V~V~~~~~~-l 257 (972)
+|.|||+|-+|..+|++|...|. .|+++|.+.-....+. +.|-..+....+.+++. ++++-+...... .
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAG--------KLGITARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH--------HCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999997 6888987542111111 11211111111112221 134444444332 1
Q ss_pred Ch----hh---hcCCceEEEcC-CCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 258 TK----EQ---LSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 258 ~~----e~---l~~fdvVV~~~-~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
.+ +. +..=.+||.+. .+.....++.+.+.+++ +.|+.+.+.|.
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g--~~~vdapV~G~ 123 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG--IHYVDCGTSGG 123 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC--CeEEeCCCCCC
Confidence 11 11 22224666653 35556666777777777 77776666554
No 221
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.25 E-value=1.7 Score=48.94 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=29.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEG 211 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGV-g~itLvD~d 211 (972)
..+|+|||+|.+|..+++.|...|. .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4689999999999999999999997 478888853
No 222
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.23 E-value=1.4 Score=57.36 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=63.2
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccC-----CC---CceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHh
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSC-----GN---QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 645 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~-----~~---~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~ 645 (972)
+.++|+|+|||.+|..+++.|++.+-.. +. .-.++|.|.+ ..+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence 4779999999999999999999863210 00 0125555533 2233333332
Q ss_pred hCCCcEEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecc
Q 002073 646 INPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 706 (972)
Q Consensus 646 inP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sg 706 (972)
.|++. +..-.+.. .+.+ ..++++.|+||+|+-.. .-..+...|...++++++..
T Consensus 626 -~~~~~--~v~lDv~D-~e~L--~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 -IENAE--AVQLDVSD-SESL--LKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -cCCCc--eEEeecCC-HHHH--HHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 24332 22222321 1222 23456899999999763 45678889999999988653
No 223
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.23 E-value=2 Score=53.12 Aligned_cols=90 Identities=14% Similarity=0.308 Sum_probs=64.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++.. ..++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~g----~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKYG----YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhCC----CeEEEeeC
Confidence 4689999999999999999999999 6889987542 222 233321 22333333
Q ss_pred C-hh-----hhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeE
Q 002073 258 T-KE-----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (972)
Q Consensus 258 ~-~e-----~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI 295 (972)
+ ++ -++++++||.+.++.+....+-..+|+++|.++.|
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEE
Confidence 2 22 35678999999998888888889999987544444
No 224
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.10 E-value=0.65 Score=54.82 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=33.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
+.+.+|+|+|+|++|..+++.|...|+..++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 678999999999999999999999999999998753
No 225
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.07 E-value=0.73 Score=47.60 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.3
Q ss_pred HhhcCeEEEEcCChH-HHHHHHHHHHhcCCEEEEEeC
Q 002073 175 RLFASNILVSGMQGL-GAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 175 kL~~s~VlIvG~gGl-G~EiaKNLvLaGVg~itLvD~ 210 (972)
.|.+++|+|+|.|.+ |..+|++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 578999999999985 8889999999999 6998884
No 226
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=89.06 E-value=1.1 Score=39.13 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhhhHhhhhcC
Q 002073 461 SEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSG 524 (972)
Q Consensus 461 ~~~Da~~l~~la~~i~~~~~~~~~~~ide~lv~~~a~~~~~el~PvaA~iGGiaAQEVIKaiTg 524 (972)
++.+.+-+.+.++-....++. ..++...+++++...-+.+.|..|++.|++..|++|.++|
T Consensus 6 d~~h~~fI~a~anLrA~~f~I---~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 6 DPLHLDFIYAAANLRAQNFGI---PPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTT------S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhCC---CcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 455566666666666666653 2478888999998888999999999999999999999876
No 227
>PRK07062 short chain dehydrogenase; Provisional
Probab=89.06 E-value=1.3 Score=48.01 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=44.4
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
++++.++|.|+ |+||.++++.|+..|. ++++++.+. .+.+.+++.+.+..|+.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 60 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA------SVAICGRDE-------------------ERLASAEARLREKFPGAR 60 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCCCce
Confidence 56788999997 7899999999999997 788876532 233344555555566666
Q ss_pred EEEeecccC
Q 002073 652 IEALQNRVG 660 (972)
Q Consensus 652 I~~~~~~v~ 660 (972)
+..+...+.
T Consensus 61 ~~~~~~D~~ 69 (265)
T PRK07062 61 LLAARCDVL 69 (265)
T ss_pred EEEEEecCC
Confidence 666555554
No 228
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.05 E-value=1.2 Score=50.74 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=50.1
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
++..+|.|||+|.+|+.+|-.++..|+..+.|+|-+.-.. .| ++.-............+|....
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~-------------~~--~~ld~~~~~~~~~~~~~I~~~~- 67 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIP-------------QG--KALDISHSNVIAGSNSKVIGTN- 67 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchh-------------hH--HHHHHHhhhhccCCCeEEEECC-
Confidence 3457999999999999999999999987799999633110 01 1111111122222334554322
Q ss_pred CCChhhhcCCceEEEcC
Q 002073 256 KLTKEQLSDFQAVVFTD 272 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~ 272 (972)
+.+.+++.|+||.|.
T Consensus 68 --d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 68 --NYEDIAGSDVVIVTA 82 (321)
T ss_pred --CHHHhCCCCEEEECC
Confidence 224678999999965
No 229
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.05 E-value=0.65 Score=52.67 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=29.9
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
+..++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~------~V~~~~~ 167 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF------PLRCWSR 167 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 456799999999999999999999998 7777764
No 230
>PRK09242 tropinone reductase; Provisional
Probab=88.95 E-value=1.3 Score=47.73 Aligned_cols=86 Identities=16% Similarity=0.388 Sum_probs=55.3
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
.+.+++++|+|+ |+||.++++.|+..|. ++++++.+. .+.+.+++.+...+|+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~------~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~ 60 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA------DVLIVARDA-------------------DALAQARDELAEEFPER 60 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCC
Confidence 356789999996 8999999999999997 788886431 23344555565556666
Q ss_pred EEEEeecccCCCcc--cccc--hhccCCCcEEEEcc
Q 002073 651 NIEALQNRVGPETE--NVFD--DTFWENITCVINAL 682 (972)
Q Consensus 651 ~I~~~~~~v~~~~e--~i~~--~~f~~~~DvVi~al 682 (972)
++..+...+..... ..+. ...+...|+||++.
T Consensus 61 ~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a 96 (257)
T PRK09242 61 EVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNA 96 (257)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 77766665553211 1111 11235677777764
No 231
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.90 E-value=1.7 Score=51.20 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=61.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+...+|+|+|+|.+|..+++.|...|. .++++|.+.= ..+.+++..+.+. +..+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-----------------------~~~~~~~~~~~~~--~i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-----------------------RAEELAEELPNTL--VLHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-----------------------HHHHHHHHCCCCe--EEEC
Confidence 557899999999999999999999888 6888885431 1223333323333 2333
Q ss_pred CC-Ch-----hhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEe
Q 002073 256 KL-TK-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKA 297 (972)
Q Consensus 256 ~l-~~-----e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a 297 (972)
+. +. ..+.+++.||.+..+......+...|++.+ .+-|.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~--~~~ii~ 328 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG--AKKVIA 328 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC--CCeEEE
Confidence 32 22 245688998888776566666667788887 444433
No 232
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.78 E-value=0.7 Score=51.70 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcCCc-chHHHHHHHHHccccCCCCceEEEEc
Q 002073 572 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITD 611 (972)
Q Consensus 572 kL~~~kVlIVGaGg-iG~e~lknLa~~Gv~~~~~g~i~iiD 611 (972)
.++.++|+|+|+|+ +|..++..|...|. .+++.+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga------tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA------TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC------EEEEEe
Confidence 46788999999999 99999999999987 788875
No 233
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.67 E-value=1.2 Score=50.60 Aligned_cols=75 Identities=24% Similarity=0.257 Sum_probs=50.9
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc---E
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL---N 651 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~---~ 651 (972)
..||.|||||.+|+.++-.|++.|++ .+|.|+|-+ +.|++..+.-+....|.. +
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~----~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~ 59 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA----DELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPK 59 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCE
Confidence 46899999999999999999999984 589999742 234555555555554322 2
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccC
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALD 683 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alD 683 (972)
|... .+ + +-++++|+||.+..
T Consensus 60 v~~~-----~d----y--~~~~~adivvitaG 80 (312)
T cd05293 60 IEAD-----KD----Y--SVTANSKVVIVTAG 80 (312)
T ss_pred EEEC-----CC----H--HHhCCCCEEEECCC
Confidence 3221 11 1 23689999988754
No 234
>PRK06141 ornithine cyclodeaminase; Validated
Probab=88.65 E-value=1.3 Score=50.27 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=55.0
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHH-hcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvL-aGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
+-..++|+|+|+|+.|..+++.+.+ .|+.+|++++.+ ..|++..++.+++.. +.+.+.
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g--~~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQG--FDAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcC--CceEEe
Confidence 4457899999999999999997765 688999998742 347777777776642 223332
Q ss_pred ecCCChhhhcCCceEEEcCCC
Q 002073 254 TSKLTKEQLSDFQAVVFTDIS 274 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~~ 274 (972)
.. .++.+.++|+||.|+.+
T Consensus 181 ~~--~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 TD--LEAAVRQADIISCATLS 199 (314)
T ss_pred CC--HHHHHhcCCEEEEeeCC
Confidence 11 23467899999887754
No 235
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.53 E-value=1.5 Score=48.50 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=29.7
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
..++|+|+|+||+|..++..|...|. +++++|.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999999999999999999996 8999874
No 236
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=88.46 E-value=1.8 Score=42.30 Aligned_cols=95 Identities=18% Similarity=0.298 Sum_probs=58.3
Q ss_pred eEEEEcC-ChHHHHHHHHHHH-hcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhc-CCCEEEEeecC
Q 002073 180 NILVSGM-QGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAVVLSTLTSK 256 (972)
Q Consensus 180 ~VlIvG~-gGlG~EiaKNLvL-aGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLN-p~V~V~~~~~~ 256 (972)
||.|+|+ |-+|.++++.+.. .|+.=+-.+|...- +.. ..|+| .+..+. ..+.+. .+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~---~~~------g~d~g---------~~~~~~~~~~~v~---~~ 60 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS---AKV------GKDVG---------ELAGIGPLGVPVT---DD 60 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS---TTT------TSBCH---------HHCTSST-SSBEB---S-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc---ccc------cchhh---------hhhCcCCcccccc---hh
Confidence 7999999 9999999999999 78876777776541 110 12333 111111 122222 11
Q ss_pred CChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeee
Q 002073 257 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEV 299 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~ 299 (972)
+ ++.+...||||+.. ..+.....-++|.+++ +|+|.+.|
T Consensus 61 l-~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViGTT 99 (124)
T PF01113_consen 61 L-EELLEEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIGTT 99 (124)
T ss_dssp H-HHHTTH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE-S
T ss_pred H-HHhcccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEECC
Confidence 2 34556689999888 5666777788888888 88886443
No 237
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.44 E-value=2 Score=53.41 Aligned_cols=88 Identities=11% Similarity=0.282 Sum_probs=63.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
..+|+|+|+|-+|..+++.|...|+ .++++|.|.- |++ .+++. .. .++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~--~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIE----TLRKF--GM--KVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhc--CC--eEEEEeC
Confidence 4799999999999999999999998 6888887552 222 22222 22 2333333
Q ss_pred -Chh-----hhcCCceEEEcCCCHHHHHHHHHHHHhcCCCce
Q 002073 258 -TKE-----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAIS 293 (972)
Q Consensus 258 -~~e-----~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~Ip 293 (972)
+++ -++++++||++.++.+....+-..+|++.|.++
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~ 493 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQ 493 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCe
Confidence 222 455789999999988888888889999875443
No 238
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.44 E-value=2.3 Score=51.32 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=29.8
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
.+|.|||+|.+|+.++.+|+..|. .+++.|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~------~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI------DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCH
Confidence 479999999999999999999998 899998753
No 239
>PLN00203 glutamyl-tRNA reductase
Probab=88.42 E-value=0.78 Score=55.53 Aligned_cols=35 Identities=23% Similarity=0.535 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
|.+++|+|||+|.+|..+++.|...|+ .+|++++.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-----~~V~V~nR 298 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-----TKMVVVNR 298 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-----CeEEEEeC
Confidence 457899999999999999999999998 78998753
No 240
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=88.28 E-value=0.9 Score=54.66 Aligned_cols=117 Identities=11% Similarity=0.101 Sum_probs=72.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCch---HHHHHHHHHHHh-cCCCEEEEee
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN---RALASVQKLQEL-NNAVVLSTLT 254 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~---RAea~~~~L~eL-Np~V~V~~~~ 254 (972)
++|.+||+|-.|..+|+||+..|. +|+++|.+.-....+...+ ..-|.. -+....+..+.+ .|++-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~~----~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA----KKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHhh----hhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999998 8999986532222221100 000110 111122222222 3666666554
Q ss_pred cCC-Ch-------hhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 255 SKL-TK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 255 ~~l-~~-------e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
..- .+ ..+..=|+||++.. +++...++.+.+.+++ +.||.+.+.|-
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G--i~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG--LLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEeCCCcCC
Confidence 321 11 12344578888765 5777788899999999 99998888764
No 241
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=88.26 E-value=0.8 Score=54.82 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=68.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHh-cCCCEEEEeec-CC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTS-KL 257 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eL-Np~V~V~~~~~-~l 257 (972)
.|.|||+|..|..+|.||+..|. +|+++|.+.-....+...+.-. -+-.-+....+..+.+ .|++-+..... ..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~g---~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAKG---KKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccCC---CCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 47899999999999999999998 7999987654433332210000 0000111112222233 35555544433 11
Q ss_pred Ch-------hhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecc
Q 002073 258 TK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (972)
Q Consensus 258 ~~-------e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G 301 (972)
.+ ..+..=++||++.. ......+..+.+.+++ +.||.+.+.|
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g--i~fvdapVsG 126 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG--ILFVGSGVSG 126 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC--CEEEcCCCCC
Confidence 11 12334478888764 4455555566788888 9999988887
No 242
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=88.15 E-value=1.7 Score=49.54 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=33.2
Q ss_pred HHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 173 MRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 173 q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
...|++++|.|||+|.+|..+|+||..+|+ +++++|.
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r 47 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVR 47 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEEC
Confidence 467999999999999999999999999999 6777763
No 243
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.15 E-value=2.8 Score=46.54 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=50.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGV---g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
...+|.+||+|.+|..++++|...|+ ..++++|... ..+++ .+.+.. .+.+ .
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~----~l~~~~-g~~~--~ 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQ----ELHQKY-GVKG--T 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHH----HHHHhc-CceE--e
Confidence 34589999999999999999999983 3444433210 01222 222211 1322 2
Q ss_pred ecCCChhhhcCCceEEEcCCCHHHHHHHHHHH
Q 002073 254 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 285 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c 285 (972)
. + ..+...+.|+||+|..+......+.++.
T Consensus 57 ~-~-~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 H-N-KKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 2245678999999998777666666554
No 244
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.15 E-value=0.7 Score=55.30 Aligned_cols=116 Identities=12% Similarity=0.129 Sum_probs=69.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCch--HHHHHHHHHHHh-cCCCEEEEeec
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN--RALASVQKLQEL-NNAVVLSTLTS 255 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~--RAea~~~~L~eL-Np~V~V~~~~~ 255 (972)
++|.|||+|-.|..+|.||...|. +|+++|.+.-....+... ...-|.+ .+....+.++.+ .|++-+-....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 799999755332222110 0000100 111122233333 35544443222
Q ss_pred -CCCh-------hhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecc
Q 002073 256 -KLTK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (972)
Q Consensus 256 -~l~~-------e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G 301 (972)
...+ ..+..=|+||++.. ....-.+..+.+.+++ +.|+.+.+.|
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G--i~fldapVSG 129 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG--ILYLGMGVSG 129 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEcCCCCC
Confidence 1111 12444578888765 4555556678888889 9999988887
No 245
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.14 E-value=0.67 Score=53.01 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|..++|.|||.|.||.++++.|...|. ++..+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM------RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5789999999999999999999998887 7888775
No 246
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.13 E-value=0.98 Score=51.51 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=50.1
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcC-C-----EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhc-CCCE-
Q 002073 179 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAVV- 249 (972)
Q Consensus 179 s~VlIvG~-gGlG~EiaKNLvLaGV-g-----~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLN-p~V~- 249 (972)
.+|.|+|+ |.+|+.+|-.|+..|+ + ++.|+|-.. .+.+++..+.-|+... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~~ 66 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLAG 66 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccCC
Confidence 48999998 9999999999999997 4 688887421 1123333444455444 3322
Q ss_pred EEEeecCCChhhhcCCceEEEcCC
Q 002073 250 LSTLTSKLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 250 V~~~~~~l~~e~l~~fdvVV~~~~ 273 (972)
++...+ +.+.+++.|+||.|..
T Consensus 67 ~~i~~~--~~~~~~daDvVVitAG 88 (323)
T TIGR01759 67 VVATTD--PEEAFKDVDAALLVGA 88 (323)
T ss_pred cEEecC--hHHHhCCCCEEEEeCC
Confidence 222221 3467889999998764
No 247
>PTZ00325 malate dehydrogenase; Provisional
Probab=88.01 E-value=1.1 Score=51.17 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=50.1
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 176 LFASNILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 176 L~~s~VlIvG~-gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
++..+|+|+|+ |.+|+.+|-.|+..|. .++.|+|-+.. +++ +.-|+..++.+.+...
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~-------------------~g~--a~Dl~~~~~~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA-------------------PGV--AADLSHIDTPAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC-------------------ccc--ccchhhcCcCceEEEe
Confidence 34459999999 9999999999987776 47999996211 111 1122333344555544
Q ss_pred ecCCC-hhhhcCCceEEEcCC
Q 002073 254 TSKLT-KEQLSDFQAVVFTDI 273 (972)
Q Consensus 254 ~~~l~-~e~l~~fdvVV~~~~ 273 (972)
+..-+ .+.+++.|+||.|..
T Consensus 65 td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 65 ADGELWEKALRGADLVLICAG 85 (321)
T ss_pred cCCCchHHHhCCCCEEEECCC
Confidence 33222 467889999998754
No 248
>PRK07574 formate dehydrogenase; Provisional
Probab=88.00 E-value=0.52 Score=54.97 Aligned_cols=35 Identities=40% Similarity=0.564 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|..++|.|||.|.||..+++.|...|+ +++.+|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~------~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV------KLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5788999999999999999999999998 8888874
No 249
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.97 E-value=1.5 Score=44.41 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=58.5
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCC--CcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNL--SRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNL--nRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
||.|+|+|..|+.++..|+..|. ++++...|.=....+ +|+- ....|+.++..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~------~V~l~~~~~~~~~~i~~~~~n-------------------~~~~~~~~l~~ 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH------EVTLWGRDEEQIEEINETRQN-------------------PKYLPGIKLPE 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE------EEEEETSCHHHHHHHHHHTSE-------------------TTTSTTSBEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------EEEEEeccHHHHHHHHHhCCC-------------------CCCCCCcccCc
Confidence 68999999999999999999996 889887764111111 1110 01123322221
Q ss_pred eecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcc--ccceEecccCCc
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--QKPLLESGTLGA 710 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~--~kPli~sgt~G~ 710 (972)
...++.+- .+.+++.|+|+-|+-...-|.++.+..-.. +.+++ .-+-|.
T Consensus 56 -~i~~t~dl-----~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii-~~~KG~ 106 (157)
T PF01210_consen 56 -NIKATTDL-----EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII-SATKGF 106 (157)
T ss_dssp -TEEEESSH-----HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE-ETS-SE
T ss_pred -ccccccCH-----HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE-EecCCc
Confidence 11122211 234678999999999888888888876643 44555 333343
No 250
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=87.96 E-value=0.93 Score=51.36 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=54.8
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
.|..++|.|||.|.||.++++.+.-.|+ ++..+|.-.-. + +.+-.. ..+.++-+...
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm------~V~~~d~~~~~-----~-------~~~~~~-----~~l~ell~~sD 198 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA------KVVYYSTSGKN-----K-------NEEYER-----VSLEELLKTSD 198 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC------EEEEECCCccc-----c-------ccCcee-----ecHHHHhhcCC
Confidence 5779999999999999999999987776 78888762110 0 111000 12333344456
Q ss_pred EEEeecccCCCcccccchhccCCC---cEEEEc
Q 002073 652 IEALQNRVGPETENVFDDTFWENI---TCVINA 681 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~---DvVi~a 681 (972)
+....-..+++|.++++.+.++.. -++||+
T Consensus 199 vv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 199 IISIHAPLNEKTKNLIAYKELKLLKDGAILINV 231 (311)
T ss_pred EEEEeCCCCchhhcccCHHHHHhCCCCeEEEEC
Confidence 666666666777777766655433 255554
No 251
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.72 E-value=2.1 Score=50.81 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=70.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 258 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~ 258 (972)
++|+|+|+|+.|..+|+.|...|. ++++.|..... +...+...|.++ .+.+..-. ...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g~-~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLGK-PLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEECC-ccc
Confidence 479999999999999999999997 79998864321 122223345444 24443211 111
Q ss_pred h----hhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEecCCCCCCcceeeccc
Q 002073 259 K----EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 332 (972)
Q Consensus 259 ~----e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~~f~v~d~~ge~p~~~~I~~I 332 (972)
. ..+.++|+||.+.. +.. ..+-..+++.+ +|++.--.. ...... -.+-..|.=++|....+.++.+|
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi~~~--~~~~~~a~~~~--i~v~~~~~~--~~~~~~-~~~~I~VTGT~GKTTTt~ml~~i 130 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGIPWD--HPTLVELRERG--IEVIGEIEL--AWRALK-HIPWVGITGTNGKTTVTALLAHI 130 (459)
T ss_pred hhhhhHHhhcCCEEEECCCCCCC--CHHHHHHHHcC--CcEEEhHHH--HHHhhc-CCCEEEEeCCCchHHHHHHHHHH
Confidence 1 25678999988653 222 22344567888 887642211 111111 11223344456666555555554
No 252
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.72 E-value=1.3 Score=49.85 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=29.8
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
..+|.|+|+|.+|+.+++.|+..|. +++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4689999999999999999999997 88888865
No 253
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.70 E-value=4.4 Score=45.18 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=29.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
.+|.|+|+|.+|..+|..|+.+|. .|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 589999999999999999999997 79999864
No 254
>PLN02602 lactate dehydrogenase
Probab=87.67 E-value=1.2 Score=51.30 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.0
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.||.|||+|.+|+.++-.|+..|++ ++|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~----~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA----DELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeC
Confidence 6999999999999999999999984 68999974
No 255
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=87.57 E-value=0.24 Score=59.85 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=67.4
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHc-----cccCCC-CceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHH
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVALM-----GVSCGN-QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 644 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa~~-----Gv~~~~-~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~ 644 (972)
.+|.+.||+++|||+.|.-+++.|+.. |++-.+ ..+|+++|.+-+=... | ..++...|..-|.+
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 678899999999999999999999885 552111 2589999987542221 1 11144455444432
Q ss_pred hhCCCcEEEEeecccCCCcccccchhccCC--CcEEEEccC--ChHHHHHHhhhhhccccceEecc
Q 002073 645 SINPRLNIEALQNRVGPETENVFDDTFWEN--ITCVINALD--NVNARLYVDQRCLYFQKPLLESG 706 (972)
Q Consensus 645 ~inP~~~I~~~~~~v~~~~e~i~~~~f~~~--~DvVi~alD--n~~aR~~v~~~c~~~~kPli~sg 706 (972)
.+.. .+- .+-.+. .|++|.+.- +.-....|..++.....|+|..-
T Consensus 387 --~~~~----------~~L-----~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaL 435 (581)
T PLN03129 387 --HEPG----------ASL-----LEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFAL 435 (581)
T ss_pred --cccC----------CCH-----HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 1110 011 122334 788877653 55567778888877788888543
No 256
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.54 E-value=1.8 Score=46.85 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=28.4
Q ss_pred HhcCcEEEEcC-C-cchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 573 LEDAKVFIVGS-G-ALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 573 L~~~kVlIVGa-G-giG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
+.+++++|.|+ | |||..+++.|+..|. +++++|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~------~V~~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA------RVVISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC------EEEEEeC
Confidence 34678999997 6 799999999999998 6777753
No 257
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.53 E-value=2.2 Score=47.41 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=27.9
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~------~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH------TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC------EEEEEECC
Confidence 69999999999999999999987 78888764
No 258
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.52 E-value=1.9 Score=46.14 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=43.3
Q ss_pred cCcEEEEc-CCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 575 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 575 ~~kVlIVG-aGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
+++++|.| .|+||.++++.|+..|. ++++++.+. .+...+.+.+.+.+|..++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~------~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR------DLALCARRT-------------------DRLEELKAELLARYPGIKVA 56 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEE
Confidence 46799999 59999999999999986 788876532 12333444555566666776
Q ss_pred EeecccCC
Q 002073 654 ALQNRVGP 661 (972)
Q Consensus 654 ~~~~~v~~ 661 (972)
.+..+++.
T Consensus 57 ~~~~D~~~ 64 (248)
T PRK08251 57 VAALDVND 64 (248)
T ss_pred EEEcCCCC
Confidence 66665553
No 259
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=87.48 E-value=0.72 Score=53.75 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=75.1
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHH--HHHHHhhCCCcE
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA--ASAATSINPRLN 651 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~va--a~~l~~inP~~~ 651 (972)
+..||.|+|+|.||..+++.|...+. +..+|+.|. |.-+...+..-+.|. +--|+.+.++- ......+| +-+
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~---~~~evvaIN-d~~~~~~~ayLl~yD-S~hG~f~~~v~~~~g~~l~v~-gk~ 132 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKD---SPLDVVAIN-DTGGVKQASHLLKYD-STLGTFDADVKPVGDDAISVD-GKV 132 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCC---CCeEEEEEc-CCCCHHHHHHHHhhc-ccCCCcCCcEEEecCCEEEEC-CEE
Confidence 45799999999999999999887543 225777664 454554444333332 23366554331 11111111 112
Q ss_pred EEEeecccCCCcccccchhcc--CCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEEEeCccc
Q 002073 652 IEALQNRVGPETENVFDDTFW--ENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLT 722 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~--~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~viip~~t 722 (972)
|....++ +++ +.-| .+.|+||.|+.-...|.+.......--+-++-++. .++.+..++|++.
T Consensus 133 I~v~~~~-dp~------~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap--~~~~~ptvV~GVN 196 (395)
T PLN03096 133 IKVVSDR-NPL------NLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP--GKGDIPTYVVGVN 196 (395)
T ss_pred EEEEEcC-Ccc------cccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC--CCCCCCeEeCccC
Confidence 2222211 111 1225 58999999999988888765544332344444555 4456677888765
No 260
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.40 E-value=1.6 Score=51.45 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=31.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+...+|+|+|+|.||..+++.+..+|+ +++++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga------~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA------RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECCh
Confidence 467899999999999999999999998 688887654
No 261
>PRK06487 glycerate dehydrogenase; Provisional
Probab=87.39 E-value=0.89 Score=51.67 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=30.8
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|.+++|.|||.|.||.++++.|.-.|+ ++...|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm------~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM------RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5889999999999999999999988887 7777764
No 262
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.24 E-value=1.4 Score=52.34 Aligned_cols=92 Identities=21% Similarity=0.258 Sum_probs=60.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+.+.+|+|+|+|..|..+++.|...|. .+++.|.+... .+...+ ..+-+. |++..+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~-~~~~~~--------------------~~~~~~--i~~~~g 60 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAP-EGLAAQ--------------------PLLLEG--IEVELG 60 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCc-cchhhh--------------------hhhccC--ceeecC
Confidence 448899999999999999999999995 89999976543 222111 111122 333344
Q ss_pred CCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeE
Q 002073 256 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFI 295 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI 295 (972)
....+.+..+|+||.+-. ++... +-+.+++.+ ++++
T Consensus 61 ~~~~~~~~~~d~vV~SPGi~~~~p--~v~~A~~~g--i~i~ 97 (448)
T COG0771 61 SHDDEDLAEFDLVVKSPGIPPTHP--LVEAAKAAG--IEII 97 (448)
T ss_pred ccchhccccCCEEEECCCCCCCCH--HHHHHHHcC--CcEE
Confidence 444467889999998754 32222 444566777 7755
No 263
>PRK08618 ornithine cyclodeaminase; Validated
Probab=87.23 E-value=2.2 Score=48.58 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=56.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHH-HhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 176 LFASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLv-LaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
-...+|+|+|+|+.|..++..+. ..|+++|+++|.+ ..|++...+++++..+ +++....
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~~~ 184 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYVVN 184 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEEeC
Confidence 35688999999999999998875 5699999998753 2377777777765432 3443332
Q ss_pred cCCChhhhcCCceEEEcCCCHH
Q 002073 255 SKLTKEQLSDFQAVVFTDISLD 276 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~~~ 276 (972)
+ .++.+.+.|+||.|+.+.+
T Consensus 185 ~--~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 185 S--ADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred C--HHHHHhcCCEEEEccCCCC
Confidence 2 2456789999999886544
No 264
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.16 E-value=0.72 Score=58.05 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=90.0
Q ss_pred CcEEEEcCCcchHHHHHHHH-HccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhC---CCcE
Q 002073 576 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN---PRLN 651 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa-~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~in---P~~~ 651 (972)
++|.|||+|.+|+.++-.++ +.|+ .++++|.+. ..+.| ++....-..+.+.+.. +. .
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~------~V~l~d~~~---~~l~~---------~~~~~~~~l~~~~~~~~~~~~-~ 370 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL------PVRIKDINP---QGINH---------ALKYSWDLLDKKVKRRHLKPS-E 370 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC------eEEEEeCCH---HHHHH---------HHHHHHHHHHHHHHcCCCCHH-H
Confidence 67999999999999999999 8898 999998753 11111 1111111111111100 00 0
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEcc-CChHHHHHHhhhhhcccc--ceEecccCCccce-eEEEeCcccCccCC
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 727 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~al-Dn~~aR~~v~~~c~~~~k--Pli~sgt~G~~G~-~~viip~~t~~y~~ 727 (972)
......++...+. + +-++++|+||.|+ .+.+.+..+-...-..-. .++-+.|.+.--. ..-.+.+-.-+.+.
T Consensus 371 ~~~~~~~i~~~~~--~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~ 446 (708)
T PRK11154 371 RDKQMALISGTTD--Y--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGL 446 (708)
T ss_pred HHHHHhcEEEeCC--h--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEE
Confidence 0000011111111 1 2247899999985 466777655555444433 3555555542111 00001111112222
Q ss_pred CCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhcccCChhhH
Q 002073 728 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (972)
Q Consensus 728 ~~dp~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~ 770 (972)
.--.|....|++-+-.-|.....++.++.++...+ +..|-.+
T Consensus 447 Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~-gk~pv~v 488 (708)
T PRK11154 447 HYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQ-GKTPIVV 488 (708)
T ss_pred ecCCccccCceEEEECCCCCCHHHHHHHHHHHHHc-CCceEEE
Confidence 22223334577777788889999999999887653 5555433
No 265
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.92 E-value=2.8 Score=46.58 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=28.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
+|.|||+|.+|..+|+.|...|. .|+++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999996 78888863
No 266
>PLN02780 ketoreductase/ oxidoreductase
Probab=86.83 E-value=1.8 Score=48.97 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=42.8
Q ss_pred cCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 575 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 575 ~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
++.++|.|+ ||||.++++.|+..|. ++++++.+. .|.+.+++.+...++..++.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~------~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL------NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC------CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEE
Confidence 567999996 8899999999999998 788886432 24445556666655555555
Q ss_pred EeecccC
Q 002073 654 ALQNRVG 660 (972)
Q Consensus 654 ~~~~~v~ 660 (972)
.+...+.
T Consensus 108 ~~~~Dl~ 114 (320)
T PLN02780 108 TVVVDFS 114 (320)
T ss_pred EEEEECC
Confidence 5544443
No 267
>PRK08618 ornithine cyclodeaminase; Validated
Probab=86.83 E-value=2 Score=48.88 Aligned_cols=146 Identities=16% Similarity=0.097 Sum_probs=81.5
Q ss_pred cccCchhhHhhhhhhhhHhhhhcCC------cccc-c-eeeEeeeccCCCCCCCCCCccCCccCchhhhhhhcCHHHHHH
Q 002073 501 AVLNPMAAMFGGIVGQEVVKACSGK------FHPL-Y-QFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKK 572 (972)
Q Consensus 501 ~el~PvaA~iGGiaAQEVIKaiTgK------f~PI-~-q~~yfD~~e~Lp~~~~~~~~~~~~~~RYdrqi~l~G~~~q~k 572 (972)
+.+.-|.+.++|.- --.+|.++.- --|- + ..+.||.-++.|..-++...+.. -|-..- ...+.+...+
T Consensus 49 ~~~~~mp~~~~~~~-~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~--~RTaa~-sala~~~la~ 124 (325)
T PRK08618 49 NTSLIMPGYAEGLE-ALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYLTQ--IRTGAL-SGVATKYLAR 124 (325)
T ss_pred CcEEEeeeecCCCC-eEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchhhh--hhHHHH-HHHHHHHhcC
Confidence 45556666665421 1247876532 2232 2 36778887777653332221100 111110 1122233333
Q ss_pred HhcCcEEEEcCCcchHHHHHHHH-HccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa-~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
-...+++|||+|+.|...+..++ ..|+ .++.|+|.+ ..|++.+++.+.... .++
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~ 179 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDI-----ERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTE 179 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCc-----cEEEEECCC-------------------HHHHHHHHHHHHHhc-CCc
Confidence 45678999999999998888775 5678 889988644 246666677665433 233
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccCCh
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALDNV 685 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~ 685 (972)
+..+.. . ++...+.|+|++|+-+.
T Consensus 180 ~~~~~~-----~-----~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 180 IYVVNS-----A-----DEAIEEADIIVTVTNAK 203 (325)
T ss_pred EEEeCC-----H-----HHHHhcCCEEEEccCCC
Confidence 333221 1 23347899999998644
No 268
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.80 E-value=0.75 Score=41.79 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=33.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
.+..++++|+|+|..|..++..|...|. .++++.|.|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~-----~~v~v~~rdi 57 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGG-----KKVVLCDRDI 57 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCE
Confidence 3678999999999999999999999976 6899998843
No 269
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=86.78 E-value=1.5 Score=51.08 Aligned_cols=87 Identities=21% Similarity=0.323 Sum_probs=56.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
.|..++|.|||+|.||..+++.|...|+ ++...|.-.-+. .+.+. . ..+.++-+...
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~------~V~~~dp~~~~~-----------~~~~~--~----~~L~ell~~sD 169 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI------KTLLCDPPRADR-----------GDEGD--F----RSLDELVQEAD 169 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCccccc-----------ccccc--c----CCHHHHHhhCC
Confidence 5779999999999999999999999998 888887532110 00010 0 11222333455
Q ss_pred EEEeecccCCC----cccccchhccCCC---cEEEEc
Q 002073 652 IEALQNRVGPE----TENVFDDTFWENI---TCVINA 681 (972)
Q Consensus 652 I~~~~~~v~~~----~e~i~~~~f~~~~---DvVi~a 681 (972)
|.....-++++ |.++++.+++..+ -++||+
T Consensus 170 iI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 170 ILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred EEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 66666666654 6677777766544 377775
No 270
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.76 E-value=3.9 Score=45.92 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=28.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
+|.|+|+|.+|+.+|.+|...|. .++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 79999999999999999999997 589988643
No 271
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=86.76 E-value=2.6 Score=47.88 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=35.3
Q ss_pred ccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 167 VYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 167 l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
-|.......+.+++|.|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus 125 ~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~ 167 (312)
T PRK15469 125 HWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSR 167 (312)
T ss_pred CcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 355333346889999999999999999999999998 6777875
No 272
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.75 E-value=2.8 Score=49.49 Aligned_cols=93 Identities=14% Similarity=0.208 Sum_probs=60.3
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
...+|+|+|+|.+|..+++.|...|. .++++|.|.= +.+ .+.+..+++.+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~------~v~vid~~~~-------------------~~~----~~~~~~~~~~~- 279 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY------SVKLIERDPE-------------------RAE----ELAEELPNTLV- 279 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCHH-------------------HHH----HHHHHCCCCeE-
Confidence 56889999999999999999999987 8899986531 111 12222233332
Q ss_pred EeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccc
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQ 699 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~ 699 (972)
+..... ....+.....+++|.||.++++...-..+...|...+
T Consensus 280 -i~gd~~--~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~ 322 (453)
T PRK09496 280 -LHGDGT--DQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG 322 (453)
T ss_pred -EECCCC--CHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC
Confidence 222222 1223334456789999999988776666655565544
No 273
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.68 E-value=3.8 Score=48.78 Aligned_cols=103 Identities=13% Similarity=0.206 Sum_probs=63.6
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 178 ASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 178 ~s~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
..+|||.| .|-+|+.+++.|...|. +|+.+|..... +.+.....+ .++ .++.+..+
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~------------------~~~~~~~~~--~~~--~~~~i~~D 175 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG------------------RKENVMHHF--SNP--NFELIRHD 175 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc------------------chhhhhhhc--cCC--ceEEEECC
Confidence 36899999 58999999999999997 56666642210 000000111 122 34445555
Q ss_pred CChhhhcCCceEEEcCC---------CHH--------HHHHHHHHHHhcCCCceeEEeeecceeEE
Q 002073 257 LTKEQLSDFQAVVFTDI---------SLD--------KAIEFDDFCHNHQPAISFIKAEVRGLFGS 305 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~---------~~~--------~~~~ln~~c~~~~~~IpfI~a~~~G~~G~ 305 (972)
+.+..+.++|+||-+.. +.. .-..+-+.|++.+ ++||.+++...||.
T Consensus 176 ~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg~ 239 (442)
T PLN02206 176 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGD 239 (442)
T ss_pred ccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhCC
Confidence 55555667888875432 111 1235567899998 89999998776653
No 274
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.65 E-value=1.1 Score=40.71 Aligned_cols=36 Identities=36% Similarity=0.397 Sum_probs=33.7
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
.+...+|+|+|.|++|.-++..|...|...++++|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 477899999999999999999999998889999988
No 275
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.64 E-value=1.6 Score=48.63 Aligned_cols=33 Identities=30% Similarity=0.308 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.+|.|+|+|.+|..+|..|+.+|. .|+++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 589999999999999999999998 799999754
No 276
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.61 E-value=3.8 Score=45.53 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=28.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
+|+|+|+|.+|+.+|..|+.+|. .|+++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 69999999999999999999995 79999863
No 277
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=86.61 E-value=1.8 Score=48.72 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=49.6
Q ss_pred EEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCC---cEEEE
Q 002073 578 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR---LNIEA 654 (972)
Q Consensus 578 VlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~---~~I~~ 654 (972)
|.|||+|.+|+.++-.|+..|+. .+|+++|.+ +.|++..+..|.+..+. .++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~----~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~ 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA----SELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE
Confidence 57999999999999999999984 589999753 24555556666665543 12221
Q ss_pred eecccCCCcccccchhccCCCcEEEEccC
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINALD 683 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~alD 683 (972)
+.+ .+-++++|+||.+..
T Consensus 58 -----~~~------~~~l~~aDiVIitag 75 (300)
T cd00300 58 -----GGD------YADAADADIVVITAG 75 (300)
T ss_pred -----CCC------HHHhCCCCEEEEcCC
Confidence 111 124679999999875
No 278
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.60 E-value=4.4 Score=45.13 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCcc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 213 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V 213 (972)
++|.|||+|-+|..+|.+|+.+|. .|+++|.+.-
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence 479999999999999999999997 7999987543
No 279
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.42 E-value=1.7 Score=49.02 Aligned_cols=76 Identities=13% Similarity=0.047 Sum_probs=56.3
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHH-hcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvL-aGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
+....+|+|+|+|+.|...++.+.. .|+.++.++|.+ ..|++..++++++.+. .+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~-- 178 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE-- 178 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--
Confidence 3456899999999999999999974 688999998753 3478888888876532 332
Q ss_pred ecCCChhhhcCCceEEEcCCC
Q 002073 254 TSKLTKEQLSDFQAVVFTDIS 274 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~~ 274 (972)
..+ .++.+.++|+||.|+.+
T Consensus 179 ~~~-~~~av~~aDiVitaT~s 198 (304)
T PRK07340 179 PLD-GEAIPEAVDLVVTATTS 198 (304)
T ss_pred ECC-HHHHhhcCCEEEEccCC
Confidence 122 23467899999998865
No 280
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.39 E-value=3.5 Score=46.49 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.6
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
..+|.|+|+|.+|..+|++|..+|. .|+++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3579999999999999999999996 78999865
No 281
>PRK06436 glycerate dehydrogenase; Provisional
Probab=86.34 E-value=0.79 Score=51.78 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.|..++|.|||.|.||.++++.|...|+ +++.+|..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~------~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM------NIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 4789999999999999999998887887 88888754
No 282
>PRK07680 late competence protein ComER; Validated
Probab=86.31 E-value=4.6 Score=44.59 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=49.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGV---g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
+|.|||+|.+|..+++.|...|. ..++++|.+. .++ +.+.+..+.+.+ .. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~----~~~~~~~~g~~~--~~-~ 55 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKA----YHIKERYPGIHV--AK-T 55 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHH----HHHHHHcCCeEE--EC-C
Confidence 59999999999999999999984 4567765421 122 223332233322 11 1
Q ss_pred CChhhhcCCceEEEcCCCHHHHHHHHHH
Q 002073 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~~~~~~~ln~~ 284 (972)
..+.+.+.|+||+|..+......+.++
T Consensus 56 -~~~~~~~aDiVilav~p~~~~~vl~~l 82 (273)
T PRK07680 56 -IEEVISQSDLIFICVKPLDIYPLLQKL 82 (273)
T ss_pred -HHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence 224567899999998655544445444
No 283
>PRK06932 glycerate dehydrogenase; Provisional
Probab=86.30 E-value=1 Score=51.06 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|..++|.|||.|.||.++++.+.-.|+ +++.+|.
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~------~V~~~~~ 178 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM------KVLYAEH 178 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC------EEEEECC
Confidence 5889999999999999999999988887 6776653
No 284
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=86.28 E-value=1.2 Score=50.36 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=30.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCC-EEEEEeC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVK-SVTLHDE 210 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg-~itLvD~ 210 (972)
.+|.|+|+|.+|+..|-.|+.-+++ .+.|+|-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi 33 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI 33 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence 3799999999999999999999999 9999984
No 285
>PLN03139 formate dehydrogenase; Provisional
Probab=86.16 E-value=0.62 Score=54.34 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|..++|.|||.|.||..+++.|..+|+ ++...|.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~------~V~~~d~ 230 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC------NLLYHDR 230 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC------EEEEECC
Confidence 4789999999999999999999999998 7777774
No 286
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.15 E-value=2.2 Score=50.20 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=32.3
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+..++|+|+|+|.+|.-+++.+..+|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga------~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA------RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC------EEEEEeCCh
Confidence 568899999999999999999999998 789988665
No 287
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.08 E-value=3 Score=39.39 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=57.0
Q ss_pred EEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEeec
Q 002073 578 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 657 (972)
Q Consensus 578 VlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~~ 657 (972)
|+|+|.|.+|-++++.|...|. .++++|.|.-. .+.+.... + ..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~------~vvvid~d~~~-----------------------~~~~~~~~--~--~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI------DVVVIDRDPER-----------------------VEELREEG--V--EVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS------EEEEEESSHHH-----------------------HHHHHHTT--S--EEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC------EEEEEECCcHH-----------------------HHHHHhcc--c--ccccc
Confidence 6899999999999999999665 89999877521 12222222 2 23333
Q ss_pred ccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhc
Q 002073 658 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY 697 (972)
Q Consensus 658 ~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~ 697 (972)
... +...+...-+++++.|+.++++...-..+...+..
T Consensus 48 d~~--~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 48 DAT--DPEVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp -TT--SHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred cch--hhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 332 23344455678999999999988877777777665
No 288
>PRK05854 short chain dehydrogenase; Provisional
Probab=86.04 E-value=3.5 Score=46.38 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=41.5
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 175 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 175 kL~~s~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
.|++++|+|.| .+|+|.++|+.|+..|. +|.+.+.+ ..+++.+.+.|.+.++...+..+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence 35677888887 67999999999999996 67776532 13556666677666665444443
No 289
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=85.96 E-value=0.69 Score=47.93 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=35.4
Q ss_pred HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCcc
Q 002073 170 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 213 (972)
Q Consensus 170 ~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V 213 (972)
......|.+++|.|+|+|.+|.++|+-|.-.|. +|..+|+..-
T Consensus 28 ~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~ 70 (178)
T PF02826_consen 28 RFPGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK 70 (178)
T ss_dssp TTTBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred CCCccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence 334458899999999999999999999999999 8999997543
No 290
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.91 E-value=5.4 Score=44.81 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
.+|.|+|+|.+|.-+|..++..|.+.+.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 48999999999999999999998669999996
No 291
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=85.90 E-value=2 Score=55.85 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=59.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhc-CC------------EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHH
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAG-VK------------SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 243 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaG-Vg------------~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~e 243 (972)
+.++|+|+|+|.+|..+|.+|+..+ +. .+++.|. -..+|+.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHHh---
Confidence 4679999999999999999998753 32 2444332 22344433332
Q ss_pred hcCCCEEEEe-ecCCC--hhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEee
Q 002073 244 LNNAVVLSTL-TSKLT--KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 298 (972)
Q Consensus 244 LNp~V~V~~~-~~~l~--~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~ 298 (972)
.|.++.... ..+.. .+.+++.|+||.|..+ .....+.+.|-+++ +.++...
T Consensus 626 -~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaG--kHvv~ek 679 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELK--KHLVTAS 679 (1042)
T ss_pred -cCCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcC--CCEEECc
Confidence 243222111 11111 1234679999988754 45678888999999 7777653
No 292
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=85.76 E-value=2.8 Score=38.29 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=53.9
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEE-cCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEe
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT-DDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~ii-D~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~ 655 (972)
||.+||+|.+|..+++.|+..|+ ...+++++ +.+. .|+..+++ ..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~-------------------~~~~~~~~----~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSP-------------------EKAAELAK----EYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSH-------------------HHHHHHHH----HCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcH-------------------HHHHHHHH----hhc-cccccC
Confidence 68999999999999999999996 22577654 3221 23332332 232 122110
Q ss_pred ecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhh-hhccccceEe
Q 002073 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQR-CLYFQKPLLE 704 (972)
Q Consensus 656 ~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~-c~~~~kPli~ 704 (972)
+. .+..+..|+||.|+........+... ....++-+|+
T Consensus 54 ------~~-----~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 54 ------DN-----EEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp ------EH-----HHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ------Ch-----HHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence 11 24456899999999888877777766 2334455553
No 293
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.76 E-value=1.5 Score=47.73 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=31.6
Q ss_pred HHHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 571 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 571 ~kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.++.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~------~V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA------NVAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 3567889999997 8999999999999997 78888754
No 294
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=85.74 E-value=6.2 Score=44.35 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=28.3
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 181 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 181 VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
|.|+|+|.+|.-+|-.|++.|...++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999987699999975
No 295
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=85.71 E-value=2.8 Score=46.21 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=75.3
Q ss_pred CcEEEEcC-CcchHHHHHHHHHc-cccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 576 AKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 576 ~kVlIVGa-GgiG~e~lknLa~~-Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
.||.|+|+ |.+|..+++.+... ++ .-..++|.+. +...+. ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~-----elvav~d~~~---~~~~~~------------------------~~~~i~ 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL-----ELVAAVDRPG---SPLVGQ------------------------GALGVA 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCC---cccccc------------------------CCCCcc
Confidence 48999999 99999999988764 45 2334456442 111100 001111
Q ss_pred EeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEecccCCccceeEEEeCcccCccCCCCCCCC
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPE 733 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~sgt~G~~G~~~viip~~t~~y~~~~dp~~ 733 (972)
. ..+- +..++.+|+||+++ .+.+-..+-..|..+++|++ .||.|+.-. ....-.. -.
T Consensus 50 ~-----~~dl-----~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vv-igttG~s~~----------~~~~l~~-aa 106 (257)
T PRK00048 50 I-----TDDL-----EAVLADADVLIDFT-TPEATLENLEFALEHGKPLV-IGTTGFTEE----------QLAELEE-AA 106 (257)
T ss_pred c-----cCCH-----HHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEE-EECCCCCHH----------HHHHHHH-Hh
Confidence 1 0111 23345799999998 66666788899999999999 446665421 0000001 11
Q ss_pred CCCCCccccCCCCChhhHHHHHHHH
Q 002073 734 KQAPMCTVHSFPHNIDHCLTWARSE 758 (972)
Q Consensus 734 ~~~p~Ctl~~fP~~~~h~i~wAr~~ 758 (972)
+..|.....||-..+.--.+.++..
T Consensus 107 ~~~~v~~s~n~s~g~~~~~~l~~~a 131 (257)
T PRK00048 107 KKIPVVIAPNFSIGVNLLMKLAEKA 131 (257)
T ss_pred cCCCEEEECcchHHHHHHHHHHHHH
Confidence 4566666777777766666666653
No 296
>PRK10537 voltage-gated potassium channel; Provisional
Probab=85.68 E-value=2 Score=50.30 Aligned_cols=93 Identities=10% Similarity=0.025 Sum_probs=60.2
Q ss_pred HHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEE
Q 002073 173 MRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST 252 (972)
Q Consensus 173 q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~ 252 (972)
+...++.||+|+|.|.+|.++++.|...|. .++++|++.++. . ....+ .+
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------------------------~---~~~g~--~v 284 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------------------------R---LPDDA--DL 284 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------------------------h---ccCCC--cE
Confidence 344457899999999999999999998887 678888652210 0 00111 12
Q ss_pred eecCCC-hh-----hhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeE
Q 002073 253 LTSKLT-KE-----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (972)
Q Consensus 253 ~~~~l~-~e-----~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI 295 (972)
..++.+ ++ .+++++.||.+.++.+....+-..+|+.++.++.|
T Consensus 285 I~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kII 333 (393)
T PRK10537 285 IPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTV 333 (393)
T ss_pred EEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEE
Confidence 233322 22 35577888888777666666667788887544444
No 297
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.66 E-value=4.8 Score=48.62 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=30.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.+|.|||+|-+|+.+|.+|+.+|. .|+++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 379999999999999999999998 899999754
No 298
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=85.59 E-value=0.81 Score=48.52 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=32.2
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.|+.++|.|+|.|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~------~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA------KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 3678899999999999999999999997 88888755
No 299
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=85.55 E-value=4.3 Score=39.25 Aligned_cols=92 Identities=20% Similarity=0.117 Sum_probs=52.1
Q ss_pred eEEEEc-CChHHHHHHHHHHHhc-CCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 180 NILVSG-MQGLGAEIAKNLILAG-VKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 180 ~VlIvG-~gGlG~EiaKNLvLaG-Vg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
||.|+| .|-+|.++++.|...- +..+.++... ...|+.-++... .+...-.+.+.. .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~---------------~~~g~~~~~~~~----~~~~~~~~~~~~--~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSS---------------RSAGKPLSEVFP----HPKGFEDLSVED--A 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEEST---------------TTTTSBHHHTTG----GGTTTEEEBEEE--T
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeec---------------cccCCeeehhcc----ccccccceeEee--c
Confidence 699999 8889999998888732 2223333321 124443222111 111223333333 4
Q ss_pred ChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeE
Q 002073 258 TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (972)
Q Consensus 258 ~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI 295 (972)
+.+.+.+.|+|++|..+... ..+...+.+.+ +++|
T Consensus 60 ~~~~~~~~Dvvf~a~~~~~~-~~~~~~~~~~g--~~Vi 94 (121)
T PF01118_consen 60 DPEELSDVDVVFLALPHGAS-KELAPKLLKAG--IKVI 94 (121)
T ss_dssp SGHHHTTESEEEE-SCHHHH-HHHHHHHHHTT--SEEE
T ss_pred chhHhhcCCEEEecCchhHH-HHHHHHHhhCC--cEEE
Confidence 55667999999999765444 44455557777 6555
No 300
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.49 E-value=0.94 Score=57.07 Aligned_cols=170 Identities=17% Similarity=0.179 Sum_probs=84.6
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccC----CCcccccccCcccccHHHHHHHHHHhhCCCcE
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SN----LnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~ 651 (972)
++|.|||+|..|+.++-.+++.|. .++++|.+.=.... +.+ .|=+.-.-|+.....+.+.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~-~l~~~~~~g~~~~~~~~~~~~~------ 380 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV------PVIMKDINQKALDLGMTEAAK-LLNKQVERGKIDGAKMAGVLSS------ 380 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHH-HHHHHHHcCCCChhhHHHHHhC------
Confidence 579999999999999999999998 99999966321110 000 0000001121111111222211
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccC-ChHHHHHHhhhhhcccc--ceEecccCCccce-eEEEeCcccCccCC
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 727 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~k--Pli~sgt~G~~G~-~~viip~~t~~y~~ 727 (972)
|+.. + + + +-++++|+||.|+- +.+.+..+-...-..-. .+|-+.|.+.-=. ..-.+.+-.-+.+.
T Consensus 381 i~~~-------~-~-~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~ 449 (715)
T PRK11730 381 IRPT-------L-D-Y--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGM 449 (715)
T ss_pred eEEe-------C-C-H--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEE
Confidence 1111 1 1 1 22578999999854 66666644444333322 3554444442110 00000110111111
Q ss_pred CCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhcccCChhhH
Q 002073 728 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (972)
Q Consensus 728 ~~dp~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~ 770 (972)
.--.|....|+.=+-.-|...+.++.++.+++..+ ++.|-.+
T Consensus 450 Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~l-gk~pv~v 491 (715)
T PRK11730 450 HFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKM-GKTPIVV 491 (715)
T ss_pred ecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHh-CCceEEe
Confidence 11112223455545556777788888888876543 5555444
No 301
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.49 E-value=1.2 Score=44.54 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=52.6
Q ss_pred CcEEEEc-CCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 576 AKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 576 ~kVlIVG-aGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
+.++|+| .||||-++++.|++.|. .++.+++.+ .-..+...+++.+...+ .++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-----~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~ 56 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-----RVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITF 56 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-----EEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-----eEEEEeeec-----------------ccccccccccccccccc--ccccc
Confidence 3688999 58999999999999987 788887654 11234444555565444 56777
Q ss_pred eecccCCCcc--cccc--hhccCCCcEEEEccC
Q 002073 655 LQNRVGPETE--NVFD--DTFWENITCVINALD 683 (972)
Q Consensus 655 ~~~~v~~~~e--~i~~--~~f~~~~DvVi~alD 683 (972)
+...+..... ..++ ...+..+|++|++..
T Consensus 57 ~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag 89 (167)
T PF00106_consen 57 IECDLSDPESIRALIEEVIKRFGPLDILINNAG 89 (167)
T ss_dssp EESETTSHHHHHHHHHHHHHHHSSESEEEEECS
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 7665553211 1111 123457788877643
No 302
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=85.47 E-value=3.6 Score=46.76 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=28.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEe
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHD 209 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD 209 (972)
|++++|.|||+|.+|..+|++|..+|+ .+++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEE
Confidence 467899999999999999999999998 455444
No 303
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=85.46 E-value=4 Score=44.88 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=48.6
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGV---g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
...+|.|+|+|-+|+.+++.|..+|+ ..+.++|.+.-. ++ +...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~~ 48 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVYL 48 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEEe
Confidence 44689999999999999999999884 236666543210 00 1111
Q ss_pred ecCCChhhhcCCceEEEcCCCHHHHHHHHHHH
Q 002073 254 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 285 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c 285 (972)
.+ ..+.+.++|+||+|..+......+.++.
T Consensus 49 ~~--~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 49 QS--NEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred CC--hHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 11 2234678999999987766666666544
No 304
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.42 E-value=3.1 Score=49.30 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=59.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+.+.+|+|+|.|+.|..+|+-|...|. .+++.|..... . ...+|.+... .+....+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~-----------------~----~~~~l~~~~~--gi~~~~g 58 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP-----------------E----RVAQIGKMFD--GLVFYTG 58 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc-----------------h----hHHHHhhccC--CcEEEeC
Confidence 457799999999999999999999997 78888854321 0 0123433222 3344444
Q ss_pred CCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeE
Q 002073 256 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFI 295 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI 295 (972)
...+..+.++|+||.+.. +.. ..+-..+++++ +|++
T Consensus 59 ~~~~~~~~~~d~vv~spgi~~~--~p~~~~a~~~~--i~v~ 95 (445)
T PRK04308 59 RLKDALDNGFDILALSPGISER--QPDIEAFKQNG--GRVL 95 (445)
T ss_pred CCCHHHHhCCCEEEECCCCCCC--CHHHHHHHHcC--CcEE
Confidence 444555678999998764 221 12344567788 8877
No 305
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.34 E-value=3.3 Score=50.69 Aligned_cols=34 Identities=15% Similarity=0.462 Sum_probs=27.8
Q ss_pred hcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 574 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 574 ~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.++.|+|.|+ |+||..+++.|+..|. ++++++.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~------~Vval~Rn 113 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF------RVRAGVRS 113 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 3567999996 8999999999999997 77766543
No 306
>PRK07478 short chain dehydrogenase; Provisional
Probab=85.30 E-value=1.7 Score=46.81 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=29.4
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+.+++++|.|+ |+||.++++.|+..|. ++.+++.+
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~------~v~~~~r~ 39 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA------KVVVGARR 39 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 45678999996 8899999999999998 78777643
No 307
>PRK09242 tropinone reductase; Provisional
Probab=85.28 E-value=4.5 Score=43.54 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=45.0
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 175 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 175 kL~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
+|++++++|.|. ||+|.++++.|+..|. +|++++.+ ..+++...+.+.+.+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 467789999985 7999999999999997 67777642 12445556667666666666655
Q ss_pred ecCC
Q 002073 254 TSKL 257 (972)
Q Consensus 254 ~~~l 257 (972)
..++
T Consensus 66 ~~Dl 69 (257)
T PRK09242 66 AADV 69 (257)
T ss_pred ECCC
Confidence 5444
No 308
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.26 E-value=0.94 Score=50.86 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.4
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+|.|||+|.+|+.++.+|+..|. ++++.|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~------~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH------DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC------EEEEEECCH
Confidence 69999999999999999999997 788887653
No 309
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=85.25 E-value=2.8 Score=47.94 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=30.4
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEe
Q 002073 174 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHD 209 (972)
Q Consensus 174 ~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD 209 (972)
..|++++|.|||+|.+|..+|+||..+|+ .+.+.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 45778999999999999999999999998 566655
No 310
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=85.25 E-value=6.5 Score=42.05 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=49.8
Q ss_pred eEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcC--CCEEEEeecC
Q 002073 180 NILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN--AVVLSTLTSK 256 (972)
Q Consensus 180 ~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp--~V~V~~~~~~ 256 (972)
+|.|+| +|.+|..+++.|+..| ..|++++.+. .+++...+.+.+... .+.++.....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~~~ 61 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTGAD 61 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEEeC
Confidence 699997 8999999999999999 5788776421 233332222211111 0111111111
Q ss_pred CChhhhcCCceEEEcCCCHHHHHHHHHH
Q 002073 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~~~~~~~ln~~ 284 (972)
..+.+...|+||+|.-+......+.++
T Consensus 62 -~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 62 -NAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred -hHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 235677899999998765555444444
No 311
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.20 E-value=3.1 Score=47.05 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=28.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-CEEEEEeC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGV-KSVTLHDE 210 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGV-g~itLvD~ 210 (972)
+|.|||+|.+|+.+|-.|+..|+ .++.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 78999995
No 312
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=85.19 E-value=1.1 Score=52.35 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|..++|.|||+|.||..+++.|...|+ ++.+.|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~------~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW------KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 4778999999999999999999999998 8888885
No 313
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.15 E-value=0.76 Score=51.79 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
..||+|+|+||||+-++-.|++.|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL------PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC------CeEEEEec
Confidence 4689999999999999999999986 78888764
No 314
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=85.06 E-value=5.3 Score=40.63 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=59.7
Q ss_pred EEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 002073 181 ILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (972)
Q Consensus 181 VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~~ 259 (972)
|+|+|+ |.+|..+++.|+..| .+|+.+=. + ..|++. .+ .++....++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R----------~---------~~~~~~--------~~--~~~~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR----------S---------PSKAED--------SP--GVEIIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES----------S---------GGGHHH--------CT--TEEEEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec----------C---------chhccc--------cc--ccccceeeehh
Confidence 789996 999999999999999 56766422 1 112221 44 44444554432
Q ss_pred -----hhhcCCceEEEcCCC----HHHHHHHHHHHHhcCCCceeEEeeecceeE
Q 002073 260 -----EQLSDFQAVVFTDIS----LDKAIEFDDFCHNHQPAISFIKAEVRGLFG 304 (972)
Q Consensus 260 -----e~l~~fdvVV~~~~~----~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G 304 (972)
+.++++|+||.+..+ ......+-+.|++.+. ..+|..++.|.++
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~-~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGV-KRVVYLSSAGVYR 103 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTS-SEEEEEEETTGTT
T ss_pred hhhhhhhhhhcchhhhhhhhhccccccccccccccccccc-ccceeeeccccCC
Confidence 356789999987642 4445577778888882 2556656555433
No 315
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=85.05 E-value=1.5 Score=49.68 Aligned_cols=107 Identities=23% Similarity=0.343 Sum_probs=62.3
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCccc--------ccCCCcccccccCcccccHHHHHHHHHHhhC
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE--------KSNLSRQFLFRDWNIGQAKSTVAASAATSIN 647 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie--------~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~in 647 (972)
++|.|||+|-.|+-+|..+|..|+ .+++.|...=. ..+|.|+. .-|+.+.+.+...+.++.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~------~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY------DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARIT 72 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC------ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhcc
Confidence 589999999999999999999778 89999866110 11122221 113333333333333333
Q ss_pred CCcEEEEeecccCCCcccccchhccCCCcEEEEcc-CChHHHHHHhhhhhccccc--eEecccCCc
Q 002073 648 PRLNIEALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYFQKP--LLESGTLGA 710 (972)
Q Consensus 648 P~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~al-Dn~~aR~~v~~~c~~~~kP--li~sgt~G~ 710 (972)
|...+ .-+.++|+||.|+ -|.+.+..+=+..-..-+| ++.|.|.+.
T Consensus 73 ~~~~~-----------------~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl 121 (307)
T COG1250 73 PTTDL-----------------AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL 121 (307)
T ss_pred ccCch-----------------hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCC
Confidence 22111 1357899999976 4666666444443333333 666666553
No 316
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.99 E-value=2 Score=45.79 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=30.1
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+.+.+++|+|+ |+||..+++.|+..|. +++++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~------~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA------KLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56789999997 9999999999999987 68888743
No 317
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.94 E-value=1.3 Score=50.49 Aligned_cols=74 Identities=9% Similarity=0.144 Sum_probs=48.3
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcC-C-----EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhc----CC
Q 002073 179 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NA 247 (972)
Q Consensus 179 s~VlIvG~-gGlG~EiaKNLvLaGV-g-----~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLN----p~ 247 (972)
.+|.|+|+ |.+|+.+|-.|+..|+ + ++.|+|-.. + +.|++.-+--|+... +.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~----~-------------~~~a~g~a~Dl~~~~~~~~~~ 65 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ----A-------------LKALEGVAMELEDCAFPLLAE 65 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCC----c-------------ccccceeehhhhhccccccCc
Confidence 58999999 9999999999999887 4 699998521 1 111222222333332 23
Q ss_pred CEEEEeecCCChhhhcCCceEEEcCC
Q 002073 248 VVLSTLTSKLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 248 V~V~~~~~~l~~e~l~~fdvVV~~~~ 273 (972)
+.|. .+ +.+.+++.|+||.|..
T Consensus 66 ~~i~--~~--~~~~~~daDivvitaG 87 (322)
T cd01338 66 IVIT--DD--PNVAFKDADWALLVGA 87 (322)
T ss_pred eEEe--cC--cHHHhCCCCEEEEeCC
Confidence 3332 22 3567889999998864
No 318
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.84 E-value=3.5 Score=44.51 Aligned_cols=34 Identities=44% Similarity=0.661 Sum_probs=29.2
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEe
Q 002073 175 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHD 209 (972)
Q Consensus 175 kL~~s~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD 209 (972)
+|.+++|+|.| .||+|.++++.|+..|. ++.++|
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~ 38 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALAD 38 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 46788999998 57999999999999997 577776
No 319
>PRK13529 malate dehydrogenase; Provisional
Probab=84.83 E-value=0.47 Score=57.23 Aligned_cols=133 Identities=15% Similarity=0.263 Sum_probs=76.9
Q ss_pred CchhhhhhhcCHHHH------------------HHHhcCcEEEEcCCcchHHHHHHHHH----ccccCC-CCceEEEEcC
Q 002073 556 SRYDAQISVFGAKLQ------------------KKLEDAKVFIVGSGALGCEFLKNVAL----MGVSCG-NQGKLTITDD 612 (972)
Q Consensus 556 ~RYdrqi~l~G~~~q------------------~kL~~~kVlIVGaGgiG~e~lknLa~----~Gv~~~-~~g~i~iiD~ 612 (972)
+||...+.+|..+.| .+|.+.||+++|||+.|.-+++.|+. .|++-. -..+|.++|.
T Consensus 258 ~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~ 337 (563)
T PRK13529 258 ERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDR 337 (563)
T ss_pred HHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcC
Confidence 566666666655544 67889999999999999999999987 577211 1258999998
Q ss_pred CcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEeecccCCCcccccchhccCCC--cEEEEccC--ChHHH
Q 002073 613 DVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENI--TCVINALD--NVNAR 688 (972)
Q Consensus 613 D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~~~v~~~~e~i~~~~f~~~~--DvVi~alD--n~~aR 688 (972)
+-+=... | .|+...|..-|.+ .++........ ....+ .+-.+.. |++|.+.- +.-..
T Consensus 338 ~GLl~~~--r------~~l~~~k~~fa~~----~~~~~~~~~~~-----~~~~L--~e~v~~~kPtvLIG~S~~~g~Ft~ 398 (563)
T PRK13529 338 QGLLTDD--M------PDLLDFQKPYARK----REELADWDTEG-----DVISL--LEVVRNVKPTVLIGVSGQPGAFTE 398 (563)
T ss_pred CCeEeCC--C------CcchHHHHHHhhh----ccccccccccc-----CCCCH--HHHHhccCCCEEEEecCCCCCCCH
Confidence 7542221 1 1344445443332 12110000000 00011 1223343 77877654 45566
Q ss_pred HHHhhhhhccccceEeccc
Q 002073 689 LYVDQRCLYFQKPLLESGT 707 (972)
Q Consensus 689 ~~v~~~c~~~~kPli~sgt 707 (972)
..|..++.....|+|.+-+
T Consensus 399 evv~~Ma~~~erPIIFaLS 417 (563)
T PRK13529 399 EIVKEMAAHCERPIIFPLS 417 (563)
T ss_pred HHHHHHHhcCCCCEEEECC
Confidence 7777777777788885433
No 320
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.80 E-value=1.9 Score=44.28 Aligned_cols=39 Identities=26% Similarity=0.473 Sum_probs=30.2
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcc
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 615 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~I 615 (972)
--|..++++|+|-|-+|.-+|+.|..+|. +++|+|-|.+
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga------~V~V~e~DPi 57 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGA------RVTVTEIDPI 57 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-------EEEEE-SSHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCC------EEEEEECChH
Confidence 35678899999999999999999999998 9999998875
No 321
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.79 E-value=1.8 Score=46.60 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.4
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
+++++++|.|+ |+||.++++.|+..|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA------QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEcC
Confidence 56788999997 8999999999999997 7877754
No 322
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=84.67 E-value=4.8 Score=44.34 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=27.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHH-hcCCEEEEEeCCc
Q 002073 179 SNILVSGM-QGLGAEIAKNLIL-AGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~-gGlG~EiaKNLvL-aGVg~itLvD~d~ 212 (972)
.+|+|+|+ |.+|..+++.+.. .++.-+.++|.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 38999999 9999999998875 4676666777654
No 323
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=84.67 E-value=2.4 Score=46.61 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=29.0
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.+.||.+||+|.+|+.+++.|...|... ..++++.|.+
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~--~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIG--KENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCC--cceEEEECCC
Confidence 3568999999999999999999988511 1347776643
No 324
>PRK06523 short chain dehydrogenase; Provisional
Probab=84.62 E-value=2.4 Score=45.74 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=46.9
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccH-HHHHHHHHHhhCCC
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK-STVAASAATSINPR 649 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~K-s~vaa~~l~~inP~ 649 (972)
++++++++|.|+ |+||.++++.|+..|. ++++++.+.-+ ++.....+-.-|+.... .+.+.+.+.+..+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~r~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA------RVVTTARSRPD--DLPEGVEFVAADLTTAEGCAAVARAVLERLGG 77 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC------EEEEEeCChhh--hcCCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 466789999996 8999999999999998 78888876432 22333333445665433 22233334443343
Q ss_pred cEEEEe
Q 002073 650 LNIEAL 655 (972)
Q Consensus 650 ~~I~~~ 655 (972)
+.+-.+
T Consensus 78 id~vi~ 83 (260)
T PRK06523 78 VDILVH 83 (260)
T ss_pred CCEEEE
Confidence 444333
No 325
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.57 E-value=1.7 Score=46.19 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=30.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 573 L~~~kVlIVG-aGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+++++|+|.| .|++|..+++.|+..|. ++++++.+.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~------~V~~~~r~~ 40 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA------EVIVVDICG 40 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCCH
Confidence 4577899999 59999999999999997 788887653
No 326
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=84.56 E-value=0.97 Score=44.91 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=49.7
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccc-cCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCC-
Q 002073 181 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFV-FSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 258 (972)
Q Consensus 181 VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qff-l~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~- 258 (972)
|+|+|+|++|+.+|-.|..+|. .+++++... ..+.+..+=+ ++..+ |+ ..+...... ..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~-~~--------------~~~~~~~~~--~~~ 61 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPD-GD--------------ETVQPPIVI--SAP 61 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETT-EE--------------EEEEEEEEE--SSH
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecc-cc--------------eeccccccc--Ccc
Confidence 7999999999999999999887 688877533 1111111100 00000 00 001111111 11
Q ss_pred hhhhcCCceEEEcCCCHHHHHHHHHHHHh
Q 002073 259 KEQLSDFQAVVFTDISLDKAIEFDDFCHN 287 (972)
Q Consensus 259 ~e~l~~fdvVV~~~~~~~~~~~ln~~c~~ 287 (972)
......+|+||+|.-+.+....+..+.+.
T Consensus 62 ~~~~~~~D~viv~vKa~~~~~~l~~l~~~ 90 (151)
T PF02558_consen 62 SADAGPYDLVIVAVKAYQLEQALQSLKPY 90 (151)
T ss_dssp GHHHSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred hhccCCCcEEEEEecccchHHHHHHHhhc
Confidence 13567899999999877777666664433
No 327
>PLN02240 UDP-glucose 4-epimerase
Probab=84.56 E-value=7.8 Score=43.82 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=29.0
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 176 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 176 L~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
|++.+|+|.|. |.+|..+++.|...|. +|+++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 55689999985 8999999999999996 7888873
No 328
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.45 E-value=3.2 Score=45.20 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=33.4
Q ss_pred HHHHHhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 171 ETMRRLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 171 e~q~kL~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
++|.+|.+.+|+|.|. ||+|.++++.|+..|. +|.++|.+
T Consensus 2 ~~~~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 2 TTMFDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred CccccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3456788899999986 8999999999999997 58887753
No 329
>PTZ00325 malate dehydrogenase; Provisional
Probab=84.42 E-value=1.7 Score=49.56 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=30.9
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
++-.||.|+|+ |.+|+.++-.|+..|++ .+|.++|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~----~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHV----SELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCC----CEEEEEec
Confidence 34569999998 99999999999988873 68999986
No 330
>PRK08291 ectoine utilization protein EutC; Validated
Probab=84.36 E-value=3.7 Score=46.84 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=53.5
Q ss_pred cCeEEEEcCChHHHHHHHHHHH-hcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 178 ASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvL-aGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
..+|+|+|+|+.|..++..+.. .|+..+++++.+ ..|++..++++++.. .+++....+
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~d- 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVARD- 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeCC-
Confidence 4689999999999999999985 578999998642 237777777765432 244433321
Q ss_pred CChhhhcCCceEEEcCCC
Q 002073 257 LTKEQLSDFQAVVFTDIS 274 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~ 274 (972)
-++.+.++|+||.|+.+
T Consensus 191 -~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 -VHEAVAGADIIVTTTPS 207 (330)
T ss_pred -HHHHHccCCEEEEeeCC
Confidence 23567789999988754
No 331
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=84.31 E-value=3.1 Score=46.64 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=65.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC-C
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL-T 258 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l-~ 258 (972)
+|.+||+|-+|..++.+|+.+|. .++++|.+.- ...+ . +.|-..+....+.+ -..++-+......- .
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~~~-----~---~~g~~~~~s~~~~~--~~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-ADEL-----L---SLGAVSVETARQVT--EASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HHHH-----H---HcCCeecCCHHHHH--hcCCEEEEeCCChHHH
Confidence 69999999999999999999996 7888886531 1111 1 12222221111111 13344444443320 0
Q ss_pred hhh----------hcCCceEEEcC-CCHHHHHHHHHHHHhcCCCceeEEeeecc
Q 002073 259 KEQ----------LSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (972)
Q Consensus 259 ~e~----------l~~fdvVV~~~-~~~~~~~~ln~~c~~~~~~IpfI~a~~~G 301 (972)
.+. +..=.+||++. .+.....++.+.+.+++ +.|+.+-+.|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~~~vdaPVsG 121 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--GDYLDAPVSG 121 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CCEEEecCCC
Confidence 111 12224666654 47778888999999999 8888876655
No 332
>PRK07062 short chain dehydrogenase; Provisional
Probab=84.31 E-value=5 Score=43.41 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=41.5
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 176 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 176 L~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
|+++.++|.|. +|+|.++++.|+..|. +|.+++.+. .+.+.+.+.+.+..+..++....
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 56788999986 6899999999999998 577776432 23444555666655555555443
Q ss_pred c
Q 002073 255 S 255 (972)
Q Consensus 255 ~ 255 (972)
.
T Consensus 66 ~ 66 (265)
T PRK07062 66 C 66 (265)
T ss_pred e
Confidence 3
No 333
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=84.24 E-value=2.9 Score=45.99 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=47.0
Q ss_pred EEEEcC-ChHHHHHHHHHHHhc--C-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhc---CCCEEEEe
Q 002073 181 ILVSGM-QGLGAEIAKNLILAG--V-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN---NAVVLSTL 253 (972)
Q Consensus 181 VlIvG~-gGlG~EiaKNLvLaG--V-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLN---p~V~V~~~ 253 (972)
|.|+|+ |.+|..+|..|+..| . .+++|+|.+. .+++.....|++.. +..+|+..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~~ 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSIT 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEEC
Confidence 579999 999999999999998 4 6899998533 12222333333333 23455542
Q ss_pred ecCCChhhhcCCceEEEcC
Q 002073 254 TSKLTKEQLSDFQAVVFTD 272 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~~ 272 (972)
.++ .+.+.+.|+||.+.
T Consensus 62 -~d~-~~~~~~aDiVv~t~ 78 (263)
T cd00650 62 -DDP-YEAFKDADVVIITA 78 (263)
T ss_pred -Cch-HHHhCCCCEEEECC
Confidence 211 45678999999965
No 334
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.23 E-value=1.2 Score=56.04 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=86.9
Q ss_pred CcEEEEcCCcchHHHHHHHH-HccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHH-HHHHHHh--hCCCcE
Q 002073 576 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTV-AASAATS--INPRLN 651 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa-~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~v-aa~~l~~--inP~~~ 651 (972)
++|.|||+|.+|+.++-.++ ..|+ .++++|.+.= -+.| +..+..- +.+.+.+ +.+. .
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~------~V~l~d~~~~---~l~~---------~~~~~~~~l~~~~~~~~~~~~-~ 365 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI------PVRIKDINPQ---GINN---------ALKYAWKLLDKGVKRRHMTPA-E 365 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC------eEEEEeCCHH---HHHH---------HHHHHHHHHHHHHHcCCCCHH-H
Confidence 57999999999999999998 4898 9999987631 1111 1111100 1111110 0000 0
Q ss_pred EEEeecccCCCcccccchhccCCCcEEEEccC-ChHHHHHHhhhhhcccc--ceEecccCCccce-eEEEeCcccCccCC
Q 002073 652 IEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 727 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~k--Pli~sgt~G~~G~-~~viip~~t~~y~~ 727 (972)
......++...+. + +-++++|+||.|+- +.+.+..+-........ -+|-+.|.+..-. ..-.+.+-.-+.+.
T Consensus 366 ~~~~~~~i~~~~~--~--~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~ 441 (699)
T TIGR02440 366 RDNQMALITGTTD--Y--RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGL 441 (699)
T ss_pred HHHHHcCeEEeCC--h--HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEE
Confidence 0000011111111 1 22579999999864 56666644444433333 2454555442211 00001111112222
Q ss_pred CCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhcccCChhhH
Q 002073 728 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (972)
Q Consensus 728 ~~dp~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~ 770 (972)
.--.|....|+.-+-.-|...+.+++++.+++.. .++.|-.+
T Consensus 442 HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~-~gk~pv~v 483 (699)
T TIGR02440 442 HYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKK-QGKTPIVV 483 (699)
T ss_pred ecCCccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCeEEEE
Confidence 2122333456666667788889999999987776 46665544
No 335
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.14 E-value=3.4 Score=48.84 Aligned_cols=93 Identities=22% Similarity=0.209 Sum_probs=57.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+++++|+|+|.|++|..+|+.|...|. +|++.|.+.... ....+.|.+.. +.+ ..+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~-------------------~~~~~~l~~~g--~~~--~~~ 58 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSE-------------------NPEAQELLEEG--IKV--ICG 58 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccc-------------------hhHHHHHHhcC--CEE--EeC
Confidence 457899999999999999999999997 788888543110 11223444432 333 222
Q ss_pred CCChhhhcC-CceEEEcCC-CHHHHHHHHHHHHhcCCCceeEE
Q 002073 256 KLTKEQLSD-FQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 296 (972)
Q Consensus 256 ~l~~e~l~~-fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~ 296 (972)
....+.+.. +|+||.+.. +.. ..+-+.+++++ +|++.
T Consensus 59 ~~~~~~~~~~~d~vV~s~gi~~~--~~~~~~a~~~~--i~v~~ 97 (447)
T PRK02472 59 SHPLELLDEDFDLMVKNPGIPYT--NPMVEKALEKG--IPIIT 97 (447)
T ss_pred CCCHHHhcCcCCEEEECCCCCCC--CHHHHHHHHCC--CcEEe
Confidence 222233444 899888653 211 23455667888 88774
No 336
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.04 E-value=6.2 Score=43.85 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=49.3
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGV---g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
+|.|||+|.+|..+++.|...|. .++.+++.+.- .++ +.+.+..+.+.+. .+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~~---~~ 57 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVELA---DN 57 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEEe---CC
Confidence 69999999999999999999983 46777664210 111 1222222333221 11
Q ss_pred CChhhhcCCceEEEcCCCHHHHHHHHHH
Q 002073 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~~~~~~~ln~~ 284 (972)
..+.+.++|+||+|..+......+.++
T Consensus 58 -~~e~~~~aDvVilavpp~~~~~vl~~l 84 (277)
T PRK06928 58 -EAEIFTKCDHSFICVPPLAVLPLLKDC 84 (277)
T ss_pred -HHHHHhhCCEEEEecCHHHHHHHHHHH
Confidence 234567899999998765555455544
No 337
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=83.97 E-value=4.4 Score=49.11 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=30.2
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
-++|.|||+|..|..||.+++.+|. .++++|.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 4679999999999999999999997 799998643
No 338
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=83.88 E-value=4 Score=41.35 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=29.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
+|.|+|+|..|+.+|.-|+..| ..++|+..+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 6999999999999999999999 6899988654
No 339
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.84 E-value=8.1 Score=42.94 Aligned_cols=80 Identities=9% Similarity=0.105 Sum_probs=50.2
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGV---g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
+.+|.+||+|-+|..++++|...|. ..|+++|.+. .++ +.+.+... + +...
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~-------------------~~~----~~l~~~~g-~--~~~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV-------------------SNL----KNASDKYG-I--TITT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH-------------------HHH----HHHHHhcC-c--EEeC
Confidence 4589999999999999999999985 3466655311 122 22332111 3 2221
Q ss_pred cCCChhhhcCCceEEEcCCCHHHHHHHHHHH
Q 002073 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 285 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c 285 (972)
+ ..+.+.+.|+||+|..+......+.++.
T Consensus 56 -~-~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 -N-NNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -C-cHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 1 2345678999999998755555555543
No 340
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=83.83 E-value=0.94 Score=53.47 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
..+|+|||+|-+||+.|-.|++.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl------~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV------PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC------cEEEEEccC
Confidence 3589999999999999999999999 899998643
No 341
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.76 E-value=5.8 Score=44.19 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
+|+|+|+|++|+.+|..|+.+|. .|++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999995 6888875
No 342
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.74 E-value=1.9 Score=48.35 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHhcCcEEEEcCCc-chHHHHHHHHHccccCCCCceEEEEc
Q 002073 572 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITD 611 (972)
Q Consensus 572 kL~~~kVlIVGaGg-iG~e~lknLa~~Gv~~~~~g~i~iiD 611 (972)
.|+.++|+|||.|. +|..+++.|...|. ++++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga------tVtv~~ 189 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA------SVTILH 189 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC------eEEEEe
Confidence 47789999999999 99999999999987 888876
No 343
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.71 E-value=4.8 Score=40.06 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=28.3
Q ss_pred eEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 180 NILVSG-MQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 180 ~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
.|+|.| .+|+|.++|+.|+..|-..+.++..+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 678887 88999999999999999899988754
No 344
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=83.68 E-value=1.5 Score=49.49 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=29.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
..+|+|+|+|++|+-+|..|..+|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 3589999999999999999999994 888887654
No 345
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=83.66 E-value=4.6 Score=46.23 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=56.7
Q ss_pred HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCE
Q 002073 170 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVV 249 (972)
Q Consensus 170 ~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~ 249 (972)
.--...+++++|.|+|+|.+|.++|+.|.-.| ..|.-..... .+-+...+...+
T Consensus 154 ~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~-------------------~~~~~~~~~~~~------ 207 (336)
T KOG0069|consen 154 WPLGYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQ-------------------LPPEEAYEYYAE------ 207 (336)
T ss_pred ccccccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccC-------------------CchhhHHHhccc------
Confidence 33456889999999999999999999999977 4444332111 111222222222
Q ss_pred EEEeecCC-ChhhhcCCceEEEcC-CCHHHHHHHHHH-HHhcC
Q 002073 250 LSTLTSKL-TKEQLSDFQAVVFTD-ISLDKAIEFDDF-CHNHQ 289 (972)
Q Consensus 250 V~~~~~~l-~~e~l~~fdvVV~~~-~~~~~~~~ln~~-c~~~~ 289 (972)
.. .++.+.+.|+||+|. .+.+++..+|+- |...+
T Consensus 208 ------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 208 ------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred ------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 12 246788999988765 578888888863 44443
No 346
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=83.64 E-value=3.1 Score=47.42 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=81.2
Q ss_pred ccccCchhhHhhhhhhhhHhhhhcCC------ccccc--eeeEeeeccCCCCCC-CCCCccCCccCchhhhhhhcCHHHH
Q 002073 500 RAVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEP-LDSTEFKPINSRYDAQISVFGAKLQ 570 (972)
Q Consensus 500 ~~el~PvaA~iGGiaAQEVIKaiTgK------f~PI~--q~~yfD~~e~Lp~~~-~~~~~~~~~~~RYdrqi~l~G~~~q 570 (972)
.+.+..|.|.++|.-. -.+|.++.- -.|-. -.+.||.-.+.|..- ++...+ ..-|-+.-- .......
T Consensus 49 ~~~~~~m~~~~~~~~~-~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~l--T~~RTaa~~-~laa~~l 124 (326)
T TIGR02992 49 NGEVDVKTAYVPGLDG-FAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYL--TDVRTAAAG-AVAARHL 124 (326)
T ss_pred CCeEEEeehhcCCCCc-eEEEEecccCCccccCCCceeEEEEEEECCCCCceEEEcCCchH--HHHHHHHHH-HHHHHHh
Confidence 3466777788776321 237776542 22332 246677766655322 111111 112222211 1111111
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHH-HccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCC
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 649 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa-~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~ 649 (972)
.+-..++++|||+|+.|...++.|+ ..|+ .+++|.+.+ ..|++.+++.+.+.. .
T Consensus 125 a~~~~~~v~iiGaG~qA~~~~~al~~~~~i-----~~v~V~~R~-------------------~~~a~~~a~~~~~~~-g 179 (326)
T TIGR02992 125 AREDSSVVAIFGAGMQARLQLEALTLVRDI-----RSARIWARD-------------------SAKAEALALQLSSLL-G 179 (326)
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHHhCCc-----cEEEEECCC-------------------HHHHHHHHHHHHhhc-C
Confidence 1223568999999999999999997 4787 788887532 247777777775433 2
Q ss_pred cEEEEeecccCCCcccccchhccCCCcEEEEccCC
Q 002073 650 LNIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (972)
Q Consensus 650 ~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn 684 (972)
+++.... +. .+...++|+|++|+-.
T Consensus 180 ~~v~~~~-----~~-----~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 180 IDVTAAT-----DP-----RAAMSGADIIVTTTPS 204 (326)
T ss_pred ceEEEeC-----CH-----HHHhccCCEEEEecCC
Confidence 3443321 11 2335789999999854
No 347
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.64 E-value=3.3 Score=49.64 Aligned_cols=92 Identities=16% Similarity=0.057 Sum_probs=59.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+++++|+|+|+|-.|..+|+-|...|. .+++.|.+... + ... ...|++ . +.....
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~~~--~-------------~~~----~~~l~~---~--~~~~~~ 60 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLP-AQALTLFCNAV--E-------------ARE----VGALAD---A--ALLVET 60 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCCcc--c-------------chH----HHHHhh---c--CEEEeC
Confidence 457899999999999999999999998 58888864331 0 001 112433 2 222233
Q ss_pred CCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEE
Q 002073 256 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 296 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~ 296 (972)
.-+++.+.++|+||.+.. +.. ..+-+.+++.+ ||++.
T Consensus 61 ~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~~--i~i~~ 98 (468)
T PRK04690 61 EASAQRLAAFDVVVKSPGISPY--RPEALAAAARG--TPFIG 98 (468)
T ss_pred CCChHHccCCCEEEECCCCCCC--CHHHHHHHHcC--CcEEE
Confidence 344567788999998754 221 12344567888 88885
No 348
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.63 E-value=2.5 Score=50.01 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=72.7
Q ss_pred HHhhc-CeEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEE
Q 002073 174 RRLFA-SNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLS 251 (972)
Q Consensus 174 ~kL~~-s~VlIvG~gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~ 251 (972)
.|+++ .+|+|+|+|+.|...+.-|...|- -.+++.|..... . ..++|++ .+.
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~-----------------~----~~~~l~~-----g~~ 55 (438)
T PRK04663 2 DRWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETP-----------------P----GQEQLPE-----DVE 55 (438)
T ss_pred CcccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCc-----------------h----hHHHhhc-----CCE
Confidence 35566 789999999999999999999954 478888854210 0 1123422 333
Q ss_pred EeecCCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEecCCCCCCcceeec
Q 002073 252 TLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIA 330 (972)
Q Consensus 252 ~~~~~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~~f~v~d~~ge~p~~~~I~ 330 (972)
...+..+++.+.++|+||.+.. +.. ...-..+++++ ||++.-. .+.+.+. . ..-..|.=++|....+.++.
T Consensus 56 ~~~g~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~g--i~i~~~~--el~~~~~-~-~~~I~VTGTnGKTTTt~ll~ 127 (438)
T PRK04663 56 LHSGGWNLEWLLEADLVVTNPGIALA--TPEIQQVLAAG--IPVVGDI--ELFAWAV-D-KPVIAITGSNGKSTVTDLTG 127 (438)
T ss_pred EEeCCCChHHhccCCEEEECCCCCCC--CHHHHHHHHCC--CcEEEHH--HHHHhhc-C-CCEEEEeCCCCHHHHHHHHH
Confidence 3334445566788999988764 221 12334567788 8886322 2222221 1 12233444566665555555
Q ss_pred cc
Q 002073 331 SI 332 (972)
Q Consensus 331 ~I 332 (972)
+|
T Consensus 128 ~i 129 (438)
T PRK04663 128 VM 129 (438)
T ss_pred HH
Confidence 54
No 349
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=83.61 E-value=4.7 Score=45.82 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=26.1
Q ss_pred CcEEEEcC-CcchHHHHHHHHHc-cccCCCCceEEEEcCC
Q 002073 576 AKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDDD 613 (972)
Q Consensus 576 ~kVlIVGa-GgiG~e~lknLa~~-Gv~~~~~g~i~iiD~D 613 (972)
++|+|.|+ |-||+.+++.|... |. +++.+|.+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~------~V~~~~r~ 35 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW------EVYGMDMQ 35 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC------eEEEEeCc
Confidence 47999997 88999999999876 45 78877643
No 350
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.60 E-value=8.7 Score=43.48 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
.+|.|+|+|-+|+-+|-.|+..|...++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999878999996
No 351
>PRK09186 flagellin modification protein A; Provisional
Probab=83.59 E-value=3 Score=44.68 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=28.1
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEc
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 611 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD 611 (972)
+.+++|+|.|+ |+||.++++.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~------~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG------IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 35688999996 8999999999999997 677775
No 352
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=83.59 E-value=3 Score=43.74 Aligned_cols=110 Identities=21% Similarity=0.184 Sum_probs=66.4
Q ss_pred cEEEEcCCcchHH-HHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHH-HHHHHHHHhhCCCcEEEE
Q 002073 577 KVFIVGSGALGCE-FLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAATSINPRLNIEA 654 (972)
Q Consensus 577 kVlIVGaGgiG~e-~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks-~vaa~~l~~inP~~~I~~ 654 (972)
||.+||+|+.-.. .+..+++.- ..-+.++|.+.|-|. .|+ ..+ ..+.+.+++.+++++|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~-~~l~~~ei~L~Did~------~RL----------~~~~~~~~~~~~~~~~~~~v~~ 63 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT-EELSGSEIVLMDIDE------ERL----------EIVERLARRMVEEAGADLKVEA 63 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT-TTSTEEEEEEE-SCH------HHH----------HHHHHHHHHHHHHCTTSSEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcC-ccCCCcEEEEEcCCH------HHH----------HHHHHHHHHHHHhcCCCeEEEE
Confidence 6899999998754 334333321 111226999998765 221 112 244555667888888877
Q ss_pred eecccCCCcccccchhccCCCcEEEEcc--CChHHHHHHhhhhhccccceEecccCCccce
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINAL--DNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~al--Dn~~aR~~v~~~c~~~~kPli~sgt~G~~G~ 713 (972)
..++ .+-+++.|+||+++ +..++|..=.+.+.++++.-...-|.|..|-
T Consensus 64 ttd~----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~ 114 (183)
T PF02056_consen 64 TTDR----------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGF 114 (183)
T ss_dssp ESSH----------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHH
T ss_pred eCCH----------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHH
Confidence 6532 23467899999974 4556777666777777776655566666554
No 353
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=83.56 E-value=0.66 Score=55.98 Aligned_cols=61 Identities=20% Similarity=0.357 Sum_probs=45.7
Q ss_pred cCchhhhhhhcCHHHH------------------HHHhcCcEEEEcCCcchHHHHHHHHH----ccccCCC-CceEEEEc
Q 002073 555 NSRYDAQISVFGAKLQ------------------KKLEDAKVFIVGSGALGCEFLKNVAL----MGVSCGN-QGKLTITD 611 (972)
Q Consensus 555 ~~RYdrqi~l~G~~~q------------------~kL~~~kVlIVGaGgiG~e~lknLa~----~Gv~~~~-~g~i~iiD 611 (972)
-+||...+.+|..+.| .+|.+.||+++|||+.|.-+++.|+. .|++-.+ ..+|+++|
T Consensus 259 L~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD 338 (559)
T PTZ00317 259 LERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVD 338 (559)
T ss_pred HHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence 3567666777766554 67889999999999999999998884 6872211 25899999
Q ss_pred CCcc
Q 002073 612 DDVI 615 (972)
Q Consensus 612 ~D~I 615 (972)
.+-+
T Consensus 339 ~~GL 342 (559)
T PTZ00317 339 SKGL 342 (559)
T ss_pred CCCe
Confidence 8743
No 354
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.47 E-value=2.1 Score=49.77 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=31.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
+...+|+|+|+|++|..+++.+...|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 69999864
No 355
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=83.40 E-value=2.7 Score=49.73 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=74.1
Q ss_pred eEEEEcCChHHH-HHHHHHHH----hcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 180 NILVSGMQGLGA-EIAKNLIL----AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 180 ~VlIvG~gGlG~-EiaKNLvL----aGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
+|.|||.|++-+ ++.+-|+. .++++|+|+|-|. ...|.. -...+.+.+.+.++.++|+..+
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 789999999866 67777776 5779999999763 111110 1233455566777777777665
Q ss_pred cCCChhhhcCCceEEEcCC--CHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 002073 255 SKLTKEQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (972)
Q Consensus 255 ~~l~~e~l~~fdvVV~~~~--~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~ 308 (972)
+ -++.+.+.|+||.+.. ..+.+.+-.++..++| + +..+|.|..|..+.
T Consensus 68 d--~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~G--i--~gqET~G~GG~~~a 117 (419)
T cd05296 68 D--RREALEGADFVFTQIRVGGLEARALDERIPLKHG--V--IGQETTGAGGFAKA 117 (419)
T ss_pred C--HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcC--C--ccccCCCcchHHHh
Confidence 4 3567889999998864 4455556666778887 4 45788888875543
No 356
>PRK07340 ornithine cyclodeaminase; Validated
Probab=83.35 E-value=1.7 Score=49.01 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=78.5
Q ss_pred cccCchhhHhhhhhhhhHhhhhcC------Cccccc--eeeEeeeccCCCCCCCCCCccCCccCchhhhhhh-----cCH
Q 002073 501 AVLNPMAAMFGGIVGQEVVKACSG------KFHPLY--QFFYFDSVESLPTEPLDSTEFKPINSRYDAQISV-----FGA 567 (972)
Q Consensus 501 ~el~PvaA~iGGiaAQEVIKaiTg------Kf~PI~--q~~yfD~~e~Lp~~~~~~~~~~~~~~RYdrqi~l-----~G~ 567 (972)
+.+.-|.|..+++. .+|.++. +--|-. -.+.||.-.+.|..-++.. |=-.+|- ...
T Consensus 49 ~~~~~mpa~~~~~~---g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~p~a~~d~~--------~lT~~RTaA~sala~ 117 (304)
T PRK07340 49 GVLLSMPASAADLA---ITKLVTVCPGNAARGLPTIQGEVVVADAATGERLFLLDGP--------TVTGRRTAAVSLLAA 117 (304)
T ss_pred CEEEEEeeccCCcc---EEEEEEeCCCCccCCCCcceEEEEEEECCCCcEEEEEcCh--------hHHHHHHHHHHHHHH
Confidence 34455555555543 3776552 112222 2556777766664322221 1112221 233
Q ss_pred HHHHHHhcCcEEEEcCCcchHHHHHHHHH-ccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhh
Q 002073 568 KLQKKLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI 646 (972)
Q Consensus 568 ~~q~kL~~~kVlIVGaGgiG~e~lknLa~-~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~i 646 (972)
+...+....+++|+|+|..|...++.+.. .|+ .++.|.|.+ ..|++.+++.+.+.
T Consensus 118 ~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~a~~~~~~ 173 (304)
T PRK07340 118 RTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPV-----RRVWVRGRT-------------------AASAAAFCAHARAL 173 (304)
T ss_pred HHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhc
Confidence 33344456899999999999999999975 577 678887543 35777788877654
Q ss_pred CCCcEEEEeecccCCCcccccchhccCCCcEEEEccC
Q 002073 647 NPRLNIEALQNRVGPETENVFDDTFWENITCVINALD 683 (972)
Q Consensus 647 nP~~~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alD 683 (972)
++ .+. . . +. ++...++|+||+|+-
T Consensus 174 ~~--~~~-~----~-~~-----~~av~~aDiVitaT~ 197 (304)
T PRK07340 174 GP--TAE-P----L-DG-----EAIPEAVDLVVTATT 197 (304)
T ss_pred CC--eeE-E----C-CH-----HHHhhcCCEEEEccC
Confidence 32 222 1 1 11 234578999999984
No 357
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.23 E-value=2.8 Score=45.90 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.5
Q ss_pred cEEEEcCCcchHHHHHHHHHccc
Q 002073 577 KVFIVGSGALGCEFLKNVALMGV 599 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv 599 (972)
+|.|||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999998885
No 358
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.20 E-value=3.6 Score=49.58 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=59.7
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+.+.+|+|+|+|+.|..+|+-|...|. +++..|..... + ..+.|.+.-+.+. ....
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~-----------------~----~~~~L~~~~~~~~--~~~g 60 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTREAP-----------------P----NLAALRAELPDAE--FVGG 60 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCCc-----------------h----hHHHHHhhcCCcE--EEeC
Confidence 456789999999999999999999997 78888854310 0 0112433322333 3334
Q ss_pred CCChhhhcCCceEEEcCC-CHH--HHHHHHHHHHhcCCCceeE
Q 002073 256 KLTKEQLSDFQAVVFTDI-SLD--KAIEFDDFCHNHQPAISFI 295 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~-~~~--~~~~ln~~c~~~~~~IpfI 295 (972)
...++.+.++|+||.+.. +.. ....+-..+++.+ ||++
T Consensus 61 ~~~~~~~~~~d~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~ 101 (498)
T PRK02006 61 PFDPALLDGVDLVALSPGLSPLEAALAPLVAAARERG--IPVW 101 (498)
T ss_pred CCchhHhcCCCEEEECCCCCCcccccCHHHHHHHHCC--CcEE
Confidence 444566778999998753 221 0112334457778 8887
No 359
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.18 E-value=4.1 Score=46.28 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=28.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
+|.|+|+|.+|+.+|.+|+.+|. .|+++|.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 79999999999999999999996 68888864
No 360
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=83.16 E-value=4 Score=43.35 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=30.3
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 175 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 175 kL~~s~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
.+++++|+|.| .|++|..+++.|...|. +|++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46678999998 79999999999999997 67777654
No 361
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=83.16 E-value=3.4 Score=48.32 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=52.9
Q ss_pred cCeEEEEcC-ChHHHHHHHHHHHhcCC------EEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhc-CCC-
Q 002073 178 ASNILVSGM-QGLGAEIAKNLILAGVK------SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAV- 248 (972)
Q Consensus 178 ~s~VlIvG~-gGlG~EiaKNLvLaGVg------~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLN-p~V- 248 (972)
-.+|.|+|+ |.+|+.+|-.|+..|+- .++|+|- |+-+.+++.-+--|+... |..
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~~ 106 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLLR 106 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhcC
Confidence 358999999 99999999999999984 3666653 233446665555555544 432
Q ss_pred EEEEeecCCChhhhcCCceEEEcCC
Q 002073 249 VLSTLTSKLTKEQLSDFQAVVFTDI 273 (972)
Q Consensus 249 ~V~~~~~~l~~e~l~~fdvVV~~~~ 273 (972)
.+.+..+ +.+.+++.|+||.|..
T Consensus 107 ~v~i~~~--~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 107 EVSIGID--PYEVFEDADWALLIGA 129 (387)
T ss_pred ceEEecC--CHHHhCCCCEEEECCC
Confidence 2332222 4567899999999764
No 362
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.14 E-value=5.3 Score=45.25 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.9
Q ss_pred CcEEEEcCCcchHHHHHHHHHcc
Q 002073 576 AKVFIVGSGALGCEFLKNVALMG 598 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~G 598 (972)
.||+|+|+||+||.++-.|++.|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999999999998
No 363
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.13 E-value=1.6 Score=55.10 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=30.3
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
.+|.|||+|..|+.++-.+++.|+ .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT------PIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------eEEEEeCCH
Confidence 579999999999999999999999 999998763
No 364
>PRK06141 ornithine cyclodeaminase; Validated
Probab=83.11 E-value=2.6 Score=47.85 Aligned_cols=141 Identities=21% Similarity=0.240 Sum_probs=81.6
Q ss_pred cccCchhhHhhh-hhhhhHhhhhcC------Cccccce--eeEeeeccCCCCCCCCCCccCCccCchhhhhhhcCHHHHH
Q 002073 501 AVLNPMAAMFGG-IVGQEVVKACSG------KFHPLYQ--FFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQK 571 (972)
Q Consensus 501 ~el~PvaA~iGG-iaAQEVIKaiTg------Kf~PI~q--~~yfD~~e~Lp~~~~~~~~~~~~~~RYdrqi~l~G~~~q~ 571 (972)
+.+..|.+.+++ ++ .+|.++. |--|-.+ .+.||.-.+.|..-++...+. .-|-..- .-.+.+...
T Consensus 48 ~~~~~mp~~~~~~~~---g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~lT--~~RTaa~-sala~~~La 121 (314)
T PRK06141 48 ATLLLMPAWNEGRYI---GVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELT--ARRTAAA-SALAASYLA 121 (314)
T ss_pred ceEEEeeeecCCCee---EEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcchh--cchhHHH-HHHHHHHhC
Confidence 456666666643 22 3887663 2234333 566888777775322222110 0121111 112333344
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHH-ccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~-~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
+...++|+|||+|+.|..+++.+.. .|+ .+|+|.+.+ ..|++.+++.+.+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~-----~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~-- 175 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPI-----KQVRVWGRD-------------------PAKAEALAAELRAQGF-- 175 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcCC--
Confidence 4467899999999999999997775 576 788887532 3577777777765322
Q ss_pred EEEEeecccCCCcccccchhccCCCcEEEEccC
Q 002073 651 NIEALQNRVGPETENVFDDTFWENITCVINALD 683 (972)
Q Consensus 651 ~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alD 683 (972)
++.... +. .+..+++|+|++|+.
T Consensus 176 ~~~~~~-----~~-----~~av~~aDIVi~aT~ 198 (314)
T PRK06141 176 DAEVVT-----DL-----EAAVRQADIISCATL 198 (314)
T ss_pred ceEEeC-----CH-----HHHHhcCCEEEEeeC
Confidence 233211 11 234578999999987
No 365
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.89 E-value=6.1 Score=43.28 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=47.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcC--CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGV--KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGV--g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
.+|.|||+|.+|..++..|...|. ..++++|.+. .+++ ++.+.. .+.+ .. +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~----~~~~~~-g~~~--~~-~ 55 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRA----ALAEEY-GVRA--AT-D 55 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHH----HHHHhc-CCee--cC-C
Confidence 479999999999999999999984 3566665321 1222 222211 1221 11 1
Q ss_pred CChhhhcCCceEEEcCCCHHHHHHHHHH
Q 002073 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~~~~~~~ln~~ 284 (972)
..+.+.+.|+||+|..+......+.++
T Consensus 56 -~~~~~~~advVil~v~~~~~~~v~~~l 82 (267)
T PRK11880 56 -NQEAAQEADVVVLAVKPQVMEEVLSEL 82 (267)
T ss_pred -hHHHHhcCCEEEEEcCHHHHHHHHHHH
Confidence 234567899999998665544444443
No 366
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.88 E-value=3.6 Score=46.66 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=57.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccc---cc-cCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSN---FV-FSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~q---ff-l~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+|.|+|+|.+|+.++..|..+|. .|++++.+.-....+..+ .- +. | ..+.+.+. +. .
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~----~-----------~~~~~~i~--~~-~ 62 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLP----T-----------CHLPDNIS--VK-S 62 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCC----C-----------CcCCCCeE--Ee-C
Confidence 69999999999999999999994 688887543111111110 00 00 0 00111112 21 1
Q ss_pred CCChhhh-cCCceEEEcCCCHHHHHHHHHHHH-hcCCCceeEEeeecce
Q 002073 256 KLTKEQL-SDFQAVVFTDISLDKAIEFDDFCH-NHQPAISFIKAEVRGL 302 (972)
Q Consensus 256 ~l~~e~l-~~fdvVV~~~~~~~~~~~ln~~c~-~~~~~IpfI~a~~~G~ 302 (972)
++. +.+ ..+|+||++.-+......+.++.. ...++.++| .-+.|+
T Consensus 63 ~~~-~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv-~~~nGi 109 (326)
T PRK14620 63 AID-EVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPIL-ICSKGI 109 (326)
T ss_pred CHH-HHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEE-EEEcCe
Confidence 111 233 578999999887776666666543 222223443 356665
No 367
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=82.85 E-value=1.3 Score=43.98 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=25.7
Q ss_pred EEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 578 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 578 VlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
|+|+|+|++|+.++-.|++.|. ++++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~------~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH------DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC------ceEEEEc
Confidence 7899999999999999999987 7777753
No 368
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.84 E-value=1.5 Score=54.48 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=63.2
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
+.+|+|+|+|-+|..+++.|...|+ +++++|.|.- +++.++ +. +.+ .
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~~~~----~~--g~~--v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV------KMTVLDHDPD-------------------HIETLR----KF--GMK--V 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHHHHH----hc--CCe--E
Confidence 5789999999999999999999998 8999998862 222222 21 222 3
Q ss_pred eecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcc
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 698 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~ 698 (972)
+..+.+ ..+++...-.++.|.||.++|+.+.-..+-..++..
T Consensus 447 ~~GDat--~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 447 FYGDAT--RMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred EEEeCC--CHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 333333 223444455678999999999998888777777665
No 369
>PRK06940 short chain dehydrogenase; Provisional
Probab=82.83 E-value=2.7 Score=46.17 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=26.9
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
++.++|.|+|+||.++++.|+ .|. +++++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~------~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK------KVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC------EEEEEeCC
Confidence 567899999999999999996 676 88888754
No 370
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=82.82 E-value=2.6 Score=47.55 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=47.4
Q ss_pred EEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhc----CCCEEEEeecCC
Q 002073 183 VSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NAVVLSTLTSKL 257 (972)
Q Consensus 183 IvG~gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLN----p~V~V~~~~~~l 257 (972)
|||+|.+|+.+|-.|+..|+ .+|.|+|-. +.+++..+.-|+... ..+.|. .+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~--~~-- 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN-------------------KDKAEGEAMDLQHAASFLPTPKKIR--SG-- 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CChhhHHHHHHHHhhcccCCCeEEe--cC--
Confidence 68999999999999999997 579999841 223444444455443 234444 22
Q ss_pred ChhhhcCCceEEEcCC
Q 002073 258 TKEQLSDFQAVVFTDI 273 (972)
Q Consensus 258 ~~e~l~~fdvVV~~~~ 273 (972)
+.+.+++.|+||.|..
T Consensus 58 ~~~~~~daDivVitag 73 (299)
T TIGR01771 58 DYSDCKDADLVVITAG 73 (299)
T ss_pred CHHHHCCCCEEEECCC
Confidence 3567899999999754
No 371
>PRK05875 short chain dehydrogenase; Provisional
Probab=82.63 E-value=2.5 Score=46.00 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.+.+++++|.|+ |+||.++++.|+..|. ++++++.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~------~V~~~~r~ 40 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA------AVMIVGRN 40 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 356789999996 8999999999999998 78877643
No 372
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.59 E-value=6.7 Score=48.00 Aligned_cols=90 Identities=20% Similarity=0.298 Sum_probs=56.3
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
+-+|+|+|+|.+|.++++.|...|. .++++|.|.- | .+++++. .+.+..++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~-------------------~----~~~~~~~----g~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT-------------------R----VDELRER----GIRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH-------------------H----HHHHHHC----CCeEEEcCC
Confidence 4799999999999999999999997 6888886431 2 2233332 233444443
Q ss_pred C-hh-----hhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeE
Q 002073 258 T-KE-----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (972)
Q Consensus 258 ~-~e-----~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI 295 (972)
+ ++ -++++|.|+.+..+.+....+-..+|+.++.++.|
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEII 512 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEE
Confidence 3 22 35678877776554444434444456655434333
No 373
>PLN02206 UDP-glucuronate decarboxylase
Probab=82.59 E-value=3.9 Score=48.63 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=28.7
Q ss_pred hcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 574 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 574 ~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+.+||+|.|+ |-||+.+++.|...|. +++++|.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~------~V~~ld~~ 152 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD------SVIVVDNF 152 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC------EEEEEeCC
Confidence 3578999995 8899999999999987 77777643
No 374
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=82.54 E-value=3.9 Score=46.31 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=52.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec---
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS--- 255 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~--- 255 (972)
.+|+|+|+|++|+..+-.|.++| ..++++-.+. ++ +++++- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~~----~~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------RL----EALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------HH----HHHHhC--CeEEecCCCccc
Confidence 37999999999999999999999 7777653211 11 222221 112221111
Q ss_pred -----CCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcC
Q 002073 256 -----KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 289 (972)
Q Consensus 256 -----~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~ 289 (972)
..+.+.+..+|+||++.-+.+....+..+....+
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~ 92 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLG 92 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCC
Confidence 1134566789999999887776666666555544
No 375
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.50 E-value=7.5 Score=43.82 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCE---------
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVV--------- 249 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~--------- 249 (972)
.+|.|+|+|-+|+.+|.+|...|. +|+++|.+.-....... +.+.....+.+....-.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~~~------------~~~~~l~~l~~~g~~~~~~~~~~~~~ 69 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAAPA------------YIAGRLEDLAAFDLLDGEAPDAVLAR 69 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHHHH------------HHHHHHHHHHHcCCCchhhHHHHhcC
Q ss_pred EEEeecCCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 250 LSTLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 250 V~~~~~~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
++...+ -.+.+.+.|+|+.|.. +.+....+-+.+.+..++-.+|.+.+.+.
T Consensus 70 i~~~~~--~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~ 121 (308)
T PRK06129 70 IRVTDS--LADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSAL 121 (308)
T ss_pred eEEECc--HHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCC
No 376
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=82.40 E-value=13 Score=42.03 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=29.3
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhc-CCEEEEEeCC
Q 002073 176 LFASNILVSGM-QGLGAEIAKNLILAG-VKSVTLHDEG 211 (972)
Q Consensus 176 L~~s~VlIvG~-gGlG~EiaKNLvLaG-Vg~itLvD~d 211 (972)
|++.+|||.|. |++|..+++.|+..| ..+|+++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 35678999984 889999999999987 4578888743
No 377
>PRK08655 prephenate dehydrogenase; Provisional
Probab=82.40 E-value=5.3 Score=47.51 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=27.1
Q ss_pred cEEEEc-CCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 577 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 577 kVlIVG-aGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+|.||| +|++|..+++.|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~------~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF------EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC------EEEEEECC
Confidence 799997 89999999999999886 78888754
No 378
>PLN00016 RNA-binding protein; Provisional
Probab=82.38 E-value=5.8 Score=45.84 Aligned_cols=113 Identities=20% Similarity=0.310 Sum_probs=68.0
Q ss_pred HHhhcCeEEEE----cC-ChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCC
Q 002073 174 RRLFASNILVS----GM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV 248 (972)
Q Consensus 174 ~kL~~s~VlIv----G~-gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V 248 (972)
......+|||+ |. |-+|..+++.|+..|. .|++++...-....+.. .+ ..++.++-..
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~----------~~-----~~~~~~l~~~- 110 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK----------EP-----FSRFSELSSA- 110 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc----------Cc-----hhhhhHhhhc-
Confidence 34555789999 75 7799999999999995 78888754321111100 00 0111122111
Q ss_pred EEEEeecCCCh--hhh--cCCceEEEcCC-CHHHHHHHHHHHHhcCCCc-eeEEeeecceeEE
Q 002073 249 VLSTLTSKLTK--EQL--SDFQAVVFTDI-SLDKAIEFDDFCHNHQPAI-SFIKAEVRGLFGS 305 (972)
Q Consensus 249 ~V~~~~~~l~~--e~l--~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~I-pfI~a~~~G~~G~ 305 (972)
.++....++++ +.+ .++|+||.+.. .......+-+.|++.+ + .||.+++.|.+|.
T Consensus 111 ~v~~v~~D~~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~g--vkr~V~~SS~~vyg~ 171 (378)
T PLN00016 111 GVKTVWGDPADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPG--LKQFLFCSSAGVYKK 171 (378)
T ss_pred CceEEEecHHHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEccHhhcCC
Confidence 13333334332 223 36899988754 4555667778899888 6 6888888877653
No 379
>PRK05442 malate dehydrogenase; Provisional
Probab=82.35 E-value=2.1 Score=48.97 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=28.6
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcC-C-----EEEEEeC
Q 002073 179 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDE 210 (972)
Q Consensus 179 s~VlIvG~-gGlG~EiaKNLvLaGV-g-----~itLvD~ 210 (972)
.+|.|+|+ |.+|+.+|-.|+..|+ + ++.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 48999998 9999999999999887 4 6999985
No 380
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=82.35 E-value=4.5 Score=43.56 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=28.0
Q ss_pred cCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 575 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 575 ~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~------~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY------RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 467999996 7899999999999987 78888744
No 381
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=82.31 E-value=8.2 Score=43.83 Aligned_cols=94 Identities=22% Similarity=0.247 Sum_probs=0.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCC-----------
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV----------- 248 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V----------- 248 (972)
+|+|+|+|.+|+.+|..|..+| .+|+++| |.... +.+++..-.+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G-~~V~~~~-----------------------r~~~~-~~~~~~g~~~~~~~~~~~~~~ 58 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAG-ADVTLIG-----------------------RARIG-DELRAHGLTLTDYRGRDVRVP 58 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcC-CcEEEEe-----------------------cHHHH-HHHHhcCceeecCCCcceecc
Q ss_pred --EEEEeecCCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 249 --VLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 249 --~V~~~~~~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
.+...... +.+..+|+||+|..+......+.++.....+...++.. +.|+
T Consensus 59 ~~~~~~~~~~---~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~-~nG~ 110 (341)
T PRK08229 59 PSAIAFSTDP---AALATADLVLVTVKSAATADAAAALAGHARPGAVVVSF-QNGV 110 (341)
T ss_pred cceeEeccCh---hhccCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEe-CCCC
No 382
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=82.29 E-value=2.9 Score=45.45 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=82.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEE---eecC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST---LTSK 256 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~---~~~~ 256 (972)
++.+||+|-.|..++++|...|- .+..+|-+.-....+... |-.-|..+.+.+++|-+- ++.. -..+
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~gh-dvV~yD~n~~av~~~~~~--------ga~~a~sl~el~~~L~~p-r~vWlMvPag~ 71 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGH-DVVGYDVNQTAVEELKDE--------GATGAASLDELVAKLSAP-RIVWLMVPAGD 71 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCC-eEEEEcCCHHHHHHHHhc--------CCccccCHHHHHHhcCCC-cEEEEEccCCC
Confidence 46789999999999999999997 677888766655555433 222333445556666543 2222 2333
Q ss_pred CChh-------hhcCCceEEEcC-CCHHHHHHHHHHHHhcCCCceeEEeeecce-----eEEEEEEcCC
Q 002073 257 LTKE-------QLSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL-----FGSVFCDFGP 312 (972)
Q Consensus 257 l~~e-------~l~~fdvVV~~~-~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~-----~G~vf~dfg~ 312 (972)
+++. .++.=|+||+.. .+.+...+-.+...+++ |.|+.++|.|- .|+.|..-|+
T Consensus 72 it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kg--i~flD~GTSGG~~G~~~G~~lMiGG~ 138 (300)
T COG1023 72 ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKG--IHFLDVGTSGGVWGAERGYCLMIGGD 138 (300)
T ss_pred chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcC--CeEEeccCCCCchhhhcCceEEecCc
Confidence 4442 456669999865 46777777788888999 99999999773 3555555554
No 383
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=82.26 E-value=8.4 Score=47.23 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=60.2
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhc-------CC
Q 002073 176 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-------NA 247 (972)
Q Consensus 176 L~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLN-------p~ 247 (972)
..+..|+|.|. |++|..+++.|+..|. +|++++.+. .+++...+.+.++. +.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence 34568999985 8999999999999997 566654321 13333333332211 11
Q ss_pred CEEEEeecCCCh-----hhhcCCceEEEcCCCH---------------HHHHHHHHHHHhcCCCceeEEeeecc
Q 002073 248 VVLSTLTSKLTK-----EQLSDFQAVVFTDISL---------------DKAIEFDDFCHNHQPAISFIKAEVRG 301 (972)
Q Consensus 248 V~V~~~~~~l~~-----e~l~~fdvVV~~~~~~---------------~~~~~ln~~c~~~~~~IpfI~a~~~G 301 (972)
..+.++..++++ ..+.+.|+||.+.... .....+-+.|+..+. -.||...+.|
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-gRIV~VSSig 210 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-NHFILVTSLG 210 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-CEEEEEccch
Confidence 235555555543 2467889988774311 112344556666651 2466666655
No 384
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=82.21 E-value=1.2 Score=52.52 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=32.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.+.+.+|+|+|+|.+|..+++.|...|+ .+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGV-----GKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 4778999999999999999999999998 78999864
No 385
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=82.17 E-value=2 Score=48.18 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=63.0
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhh-CCCcEEEEe
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI-NPRLNIEAL 655 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~i-nP~~~I~~~ 655 (972)
+|.+||+|.+|..++++|+..|. ++++.|.+.-....+. +.|-.-+....+.+... ++++=+...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~------~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH------EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC------eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEe
Confidence 69999999999999999999997 7888887631111110 01111111122222222 344444443
Q ss_pred ecccCCCcccccch--hccCCCcEEEEccC-ChHHHHHHhhhhhccccceEecccCCc
Q 002073 656 QNRVGPETENVFDD--TFWENITCVINALD-NVNARLYVDQRCLYFQKPLLESGTLGA 710 (972)
Q Consensus 656 ~~~v~~~~e~i~~~--~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~kPli~sgt~G~ 710 (972)
... .....+++. ..+..-++||++.- +...-..+.+.+...++-++++...|.
T Consensus 68 ~~~--~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 68 PAG--EITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred cCC--cHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 321 011112110 12334467777633 333334455677777888888777764
No 386
>PRK12367 short chain dehydrogenase; Provisional
Probab=82.12 E-value=1.6 Score=47.44 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=34.5
Q ss_pred HHHHHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 569 LQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 569 ~q~kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.|.+++.++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~------~Vi~~~r~ 47 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA------KVIGLTHS 47 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 488999999999996 8899999999999997 78888755
No 387
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.04 E-value=4.2 Score=48.24 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=73.3
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
.-.|+|+|+|+.|..+|+-|...|. .++..|...- .+ ..+.|.+.++.+.+. .+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~-----------------~~----~~~~l~~~~~g~~~~--~~~~ 61 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQ-----------------PP----GLDTLAREFPDVELR--CGGF 61 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCC-----------------ch----hHHHHHhhcCCcEEE--eCCC
Confidence 4579999999999999999999997 7888884320 00 112355444444443 3334
Q ss_pred ChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEecCCCCCCcceeeccc
Q 002073 258 TKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 332 (972)
Q Consensus 258 ~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~~f~v~d~~ge~p~~~~I~~I 332 (972)
+++.+.++|+||.+.. +.. ...-..+++++ +|++.-. .+.+.+. -.+--.|.=++|....+.+|.+|
T Consensus 62 ~~~~~~~~d~vV~sp~i~~~--~p~~~~a~~~~--i~i~~~~--el~~~~~--~~~~I~VTGT~GKTTTt~li~~i 129 (448)
T PRK03803 62 DCELLVQASEIIISPGLALD--TPALRAAAAMG--IEVIGDI--ELFAREA--KAPVIAITGSNGKSTVTTLVGEM 129 (448)
T ss_pred ChHHhcCCCEEEECCCCCCC--CHHHHHHHHCC--CcEEEHH--HHHHHhc--CCCEEEEECCCcHHHHHHHHHHH
Confidence 4567788999988764 221 12234567788 8887311 1122221 11223444456666666666665
No 388
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.02 E-value=2.9 Score=46.64 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=29.6
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+.+++++|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~------~Vi~~~R~ 73 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA------TVVAVARR 73 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 45678999996 9999999999999997 78887643
No 389
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.97 E-value=6.3 Score=43.14 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=21.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGV 202 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGV 202 (972)
+|.|||+|-+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999884
No 390
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.96 E-value=5.3 Score=45.95 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=57.1
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEee
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~ 656 (972)
+|+|+|+|.||.-.+..+..+|. .+|+++|.+. .|-+.|++.. . ..+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-----~~Viv~d~~~-------------------~Rl~~A~~~~----g-~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-----SVVIVVDRSP-------------------ERLELAKEAG----G-ADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCCH-------------------HHHHHHHHhC----C-CeEeecC
Confidence 89999999999999999999999 8999997654 1222222211 1 1111000
Q ss_pred cccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceE
Q 002073 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 703 (972)
Q Consensus 657 ~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli 703 (972)
.. ....+.+....--..+|+||+|+.+..+....-+.++..+.-.+
T Consensus 222 ~~-~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 222 SE-DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred cc-ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 00 00001111111114699999999988877766666665554433
No 391
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.90 E-value=2.7 Score=47.11 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=30.2
Q ss_pred HHHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 571 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 571 ~kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
..|.+++++|.|+ |+||.++++.|+..|. +++++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga------~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA------TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 3466789999996 7899999999999997 7777764
No 392
>PTZ00117 malate dehydrogenase; Provisional
Probab=81.87 E-value=1.4 Score=50.22 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=31.5
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
++.||.|||+|.+|..++-.+++.|+ ..|.|+|-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-----~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-----GDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEECC
Confidence 56799999999999999999999998 689999854
No 393
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=81.71 E-value=1.3 Score=49.89 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=29.7
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+.+|+|||+|++|+.++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~------~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF------DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEeCC
Confidence 4689999999999999999999997 788886654
No 394
>PRK12861 malic enzyme; Reviewed
Probab=81.69 E-value=0.64 Score=58.40 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=36.3
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcc
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 615 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~I 615 (972)
++|.+.||++.|||+-|..+++.|...|+. ..+|+++|..-+
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~---~~~i~~~D~~Gl 226 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLP---VENIWVTDIEGV 226 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCC---hhhEEEEcCCCe
Confidence 678899999999999999999999999992 138999997654
No 395
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.53 E-value=1.5 Score=49.92 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCE------EEEEeCC
Q 002073 179 SNILVSGM-QGLGAEIAKNLILAGVKS------VTLHDEG 211 (972)
Q Consensus 179 s~VlIvG~-gGlG~EiaKNLvLaGVg~------itLvD~d 211 (972)
.+|+|+|+ |.+|+.+|..|+..|+-. +.|+|..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 48999999 999999999999988755 9999864
No 396
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=81.51 E-value=3.1 Score=44.35 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=29.4
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
|++++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~------~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA------KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEecCC
Confidence 45788999995 8899999999999987 78877644
No 397
>PRK07831 short chain dehydrogenase; Provisional
Probab=81.50 E-value=7.1 Score=42.19 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=28.5
Q ss_pred HhhcCeEEEEcC-C-hHHHHHHHHHHHhcCCEEEEEeC
Q 002073 175 RLFASNILVSGM-Q-GLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 175 kL~~s~VlIvG~-g-GlG~EiaKNLvLaGVg~itLvD~ 210 (972)
.+.+.+|+|.|. | |+|..+++.|+..|. +|++.|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeC
Confidence 344678999997 5 799999999999998 4777653
No 398
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=81.44 E-value=2.5 Score=45.53 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=31.1
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~------~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA------RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEcCCH
Confidence 56788999996 9999999999999998 788887654
No 399
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.42 E-value=1.5 Score=48.80 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=28.1
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
||+|+|+|++|+.++..|+..|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~------~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH------DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 69999999999999999999986 88998853
No 400
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=81.40 E-value=8.1 Score=45.93 Aligned_cols=101 Identities=14% Similarity=0.195 Sum_probs=63.1
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 179 SNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 179 s~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
.+|+|.| .|-+|+.+++.|...|. +|+.+|...... + +.+..+.....++....++
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~~-----------------~-----~~~~~~~~~~~~~~~~~Di 177 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTGR-----------------K-----ENLVHLFGNPRFELIRHDV 177 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCcc-----------------H-----hHhhhhccCCceEEEECcc
Confidence 3799998 57899999999999996 788887432100 0 0011111112344444555
Q ss_pred ChhhhcCCceEEEcCC---------CH--------HHHHHHHHHHHhcCCCceeEEeeecceeE
Q 002073 258 TKEQLSDFQAVVFTDI---------SL--------DKAIEFDDFCHNHQPAISFIKAEVRGLFG 304 (972)
Q Consensus 258 ~~e~l~~fdvVV~~~~---------~~--------~~~~~ln~~c~~~~~~IpfI~a~~~G~~G 304 (972)
.+..+.++|+||-+.. +. ..-..+-+.|++++ +.||.+++...||
T Consensus 178 ~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg 239 (436)
T PLN02166 178 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYG 239 (436)
T ss_pred ccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhC
Confidence 4455667898886432 11 11245567899988 7899998877766
No 401
>PLN02688 pyrroline-5-carboxylate reductase
Probab=81.38 E-value=9.5 Score=41.75 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=47.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGV---g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
+|.+||+|.+|..++++|..+|. ..|+++++ | ...|+ +.+.+. .+.+. . +
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~---------r---------~~~~~----~~~~~~--g~~~~--~-~ 54 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADD---------S---------NPARR----DVFQSL--GVKTA--A-S 54 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeC---------C---------CHHHH----HHHHHc--CCEEe--C-C
Confidence 69999999999999999999985 24555521 0 01122 223332 23221 1 1
Q ss_pred CChhhhcCCceEEEcCCCHHHHHHHHHH
Q 002073 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~~~~~~~ln~~ 284 (972)
..+...+.|+||.|..+......+.++
T Consensus 55 -~~e~~~~aDvVil~v~~~~~~~vl~~l 81 (266)
T PLN02688 55 -NTEVVKSSDVIILAVKPQVVKDVLTEL 81 (266)
T ss_pred -hHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence 224567899999998655545455544
No 402
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=81.38 E-value=1.1 Score=49.34 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCc----------eEEEEcCC
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQG----------KLTITDDD 613 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g----------~i~iiD~D 613 (972)
++|.+.||+++|+|+-|.-+++.|...|+ . +|+++|..
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~-----~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXV-----KEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHH-----hcCCCHHHHhccEEEECCC
No 403
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=81.35 E-value=3 Score=41.14 Aligned_cols=82 Identities=21% Similarity=0.145 Sum_probs=46.1
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
...+|.|||+|-+|..+++.|..+|. .|.-+- +|.....++++++-+...+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~----------------------srs~~sa~~a~~~~~~~~~~~---- 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH-EVVGVY----------------------SRSPASAERAAAFIGAGAILD---- 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS-EEEEES----------------------SCHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC-eEEEEE----------------------eCCcccccccccccccccccc----
Confidence 45689999999999999999999996 343221 133345666666666554432
Q ss_pred CChhhhcCCceEEEcCCCHHHHHHHHHHHH
Q 002073 257 LTKEQLSDFQAVVFTDISLDKAIEFDDFCH 286 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~ 286 (972)
.++.+..+|+|++|..+........+++.
T Consensus 62 -~~~~~~~aDlv~iavpDdaI~~va~~La~ 90 (127)
T PF10727_consen 62 -LEEILRDADLVFIAVPDDAIAEVAEQLAQ 90 (127)
T ss_dssp -TTGGGCC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred -cccccccCCEEEEEechHHHHHHHHHHHH
Confidence 23567789999998754443333444443
No 404
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=81.29 E-value=4.2 Score=45.35 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=29.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.+|.|+|+|.+|..+|++|...|. .++++|.+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 479999999999999999999996 688888643
No 405
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=81.27 E-value=3.4 Score=49.00 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=36.0
Q ss_pred hhhhccCHHHH----HHhhcCeEEEEcCChHHHHHHHHHHHhcCCE
Q 002073 163 RQLAVYGRETM----RRLFASNILVSGMQGLGAEIAKNLILAGVKS 204 (972)
Q Consensus 163 RQi~l~G~e~q----~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~ 204 (972)
+|-|+|+.+.. ..|++++|+|||+|..|..-|-||--+|+..
T Consensus 17 ~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnV 62 (487)
T PRK05225 17 GKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDI 62 (487)
T ss_pred ccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCcccccee
Confidence 44577887766 7899999999999999999999999999943
No 406
>PLN02688 pyrroline-5-carboxylate reductase
Probab=81.18 E-value=6.5 Score=43.07 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=21.4
Q ss_pred cEEEEcCCcchHHHHHHHHHccc
Q 002073 577 KVFIVGSGALGCEFLKNVALMGV 599 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv 599 (972)
||.+||+|.+|+.++++|...|.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999884
No 407
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.09 E-value=3.3 Score=44.00 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=28.2
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEc
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 611 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD 611 (972)
+.+++++|.|+ |+||.++++.|+..|. ++++++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~------~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA------TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC------EEEEEe
Confidence 45788999996 8999999999999997 677764
No 408
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=81.09 E-value=4.8 Score=48.77 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
++|.|||+|-.|.-||.+|+.+|. .++++|.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999998 799998654
No 409
>PRK08251 short chain dehydrogenase; Provisional
Probab=81.08 E-value=9.2 Score=40.78 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=42.7
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 178 ASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 178 ~s~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
+.+|+|.| .||+|.++++.|+..|. ++++.+.+. .+.+.....+.+.+|...+.....+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 45788887 88999999999999995 688776531 2334455566666676666666554
Q ss_pred CC
Q 002073 257 LT 258 (972)
Q Consensus 257 l~ 258 (972)
++
T Consensus 62 ~~ 63 (248)
T PRK08251 62 VN 63 (248)
T ss_pred CC
Confidence 43
No 410
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.00 E-value=3.5 Score=46.80 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=48.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 180 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 180 ~VlIvG~-gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
+|.|+|+ |.+|+.+|-.|+..|+ .++.|+|-.. |+.-+--|+.-.+.+.+......-
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~---------------------a~g~alDL~~~~~~~~i~~~~~~~ 60 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVN---------------------TPGVAADLSHINTPAKVTGYLGPE 60 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCc---------------------cceeehHhHhCCCcceEEEecCCC
Confidence 7999999 9999999999999997 6899999640 111111233332445665431110
Q ss_pred -ChhhhcCCceEEEcCC
Q 002073 258 -TKEQLSDFQAVVFTDI 273 (972)
Q Consensus 258 -~~e~l~~fdvVV~~~~ 273 (972)
..+.+++.|+||.|..
T Consensus 61 ~~y~~~~daDivvitaG 77 (310)
T cd01337 61 ELKKALKGADVVVIPAG 77 (310)
T ss_pred chHHhcCCCCEEEEeCC
Confidence 1356889999998754
No 411
>PRK14982 acyl-ACP reductase; Provisional
Probab=80.98 E-value=1.5 Score=50.39 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHH-ccccCCCCceEEEEcCC
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDDD 613 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~-~Gv~~~~~g~i~iiD~D 613 (972)
.|.+++|+|+|| |.||+++++.|+. .|+ .++++++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv-----~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV-----AELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC-----CEEEEEcCC
Confidence 578899999999 8999999999985 577 789988643
No 412
>PRK12827 short chain dehydrogenase; Provisional
Probab=80.95 E-value=3.7 Score=43.52 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
+.+++++|.|+ |+||.++++.|+..|. ++++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~------~v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA------DVIVLDI 38 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEcC
Confidence 45678999995 8999999999999997 7788763
No 413
>PLN02306 hydroxypyruvate reductase
Probab=80.90 E-value=1.6 Score=51.00 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=30.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHH-HccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa-~~Gv~~~~~g~i~iiD~ 612 (972)
.|..++|.|||.|.||+++++.|. -+|+ ++...|.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm------~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM------NLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 488999999999999999999986 6676 7888875
No 414
>PRK08291 ectoine utilization protein EutC; Validated
Probab=80.86 E-value=4.7 Score=46.04 Aligned_cols=145 Identities=13% Similarity=0.154 Sum_probs=79.5
Q ss_pred cccCchhhHhhhhhhhhHhhhhcCC------ccccc--eeeEeeeccCCCCCC-CCCCccCCccCchhhhhhhcCHHHHH
Q 002073 501 AVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEP-LDSTEFKPINSRYDAQISVFGAKLQK 571 (972)
Q Consensus 501 ~el~PvaA~iGGiaAQEVIKaiTgK------f~PI~--q~~yfD~~e~Lp~~~-~~~~~~~~~~~RYdrqi~l~G~~~q~ 571 (972)
+.++.|.++++|.-. -.+|.++.- -.|-. -.+.||.-.+.|..- ++... -..-|-+.- ...+.....
T Consensus 53 ~~~~~mp~~~~~~~~-~g~K~~~~~~~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~--lt~~rT~a~-~~~a~~~la 128 (330)
T PRK08291 53 GEVDVKTAYIPGLDS-FAIKVSPGFFDNPKLGLPSLNGLMVVLSARTGLVEALLLDNGY--LTDVRTAAA-GAVAARHLA 128 (330)
T ss_pred CcEEEeecccCCCCe-eEEEeccCCCCccccCCCcceEEEEEEeCCCCceEEEEcCCch--HHHHHHHHH-HHHHHHHhC
Confidence 467778888876311 237877642 22322 355677655544321 11111 111222211 112222222
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHH-ccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~-~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
+-..++++|+|+|+.|...+..|+. .|+ .+++|++.+ ..|++.+++.+++.. .+
T Consensus 129 ~~~~~~v~IiGaG~~a~~~~~al~~~~~~-----~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~ 183 (330)
T PRK08291 129 REDASRAAVIGAGEQARLQLEALTLVRPI-----REVRVWARD-------------------AAKAEAYAADLRAEL-GI 183 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHhhcc-Cc
Confidence 2234689999999999999999985 577 788888532 246777777765432 23
Q ss_pred EEEEeecccCCCcccccchhccCCCcEEEEccCC
Q 002073 651 NIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (972)
Q Consensus 651 ~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn 684 (972)
++..+. +. ++.+.+.|+|++|+-.
T Consensus 184 ~v~~~~-----d~-----~~al~~aDiVi~aT~s 207 (330)
T PRK08291 184 PVTVAR-----DV-----HEAVAGADIIVTTTPS 207 (330)
T ss_pred eEEEeC-----CH-----HHHHccCCEEEEeeCC
Confidence 333322 11 2335678999999853
No 415
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=80.78 E-value=0.96 Score=51.59 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=54.9
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
..+..++|.|+|+|.||.++|+.|--.|- .|+.++.++ ..+ +.+.+. +..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~--------------~i~y~~r~~---------~~~--~~~~~~----~~~- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGC--------------VILYHSRTQ---------LPP--EEAYEY----YAE- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccc--------------eeeeecccC---------Cch--hhHHHh----ccc-
Confidence 45679999999999999999999988442 122222111 111 111111 111
Q ss_pred EEEEeecccCCCcccccchhccCCCcEE-EEccCChHHHHHHhhhhhccccc
Q 002073 651 NIEALQNRVGPETENVFDDTFWENITCV-INALDNVNARLYVDQRCLYFQKP 701 (972)
Q Consensus 651 ~I~~~~~~v~~~~e~i~~~~f~~~~DvV-i~alDn~~aR~~v~~~c~~~~kP 701 (972)
.+++ ++++.+.|+| ++|-.+.+++..+|+.....-++
T Consensus 208 ------------~~d~--~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~ 245 (336)
T KOG0069|consen 208 ------------FVDI--EELLANSDVIVVNCPLTKETRHLINKKFIEKMKD 245 (336)
T ss_pred ------------ccCH--HHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCC
Confidence 1112 4678889966 66778999999999877665443
No 416
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.76 E-value=2.1 Score=50.36 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|..++|.|||.|.||..+++.+.-.|+ ++...|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm------~V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM------RVYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5789999999999999999999998888 8888874
No 417
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=80.75 E-value=5.4 Score=48.87 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=31.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.+.+|+|+|.|..|...|..|.+.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 56799999999999999999999998 599999643
No 418
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.68 E-value=6.6 Score=41.74 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEe
Q 002073 175 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (972)
Q Consensus 175 kL~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~ 253 (972)
++++++|+|.|. |++|.++++.|+..|.. |++++... .+.+.+...+.. ...+..+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~---~~~~~~~ 58 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNE-------------------EAAERVAAEILA---GGRAIAV 58 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCH-------------------HHHHHHHHHHhc---CCeEEEE
Q ss_pred ecCCCh------------hhhcCCceEEEc
Q 002073 254 TSKLTK------------EQLSDFQAVVFT 271 (972)
Q Consensus 254 ~~~l~~------------e~l~~fdvVV~~ 271 (972)
..++.+ +.+...|+||.+
T Consensus 59 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ 88 (251)
T PRK07231 59 AADVSDEADVEAAVAAALERFGSVDILVNN 88 (251)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCCCEEEEC
No 419
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=80.65 E-value=1.5 Score=49.70 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=52.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEE
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I 652 (972)
+...+|+|+|+|.+|..+++.|...|. .+++++|.+. .|+..+++.+. ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-----~~V~v~~r~~-------------------~ra~~la~~~g-----~~~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-----AEITIANRTY-------------------ERAEELAKELG-----GNA 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeCCH-------------------HHHHHHHHHcC-----CeE
Confidence 678999999999999999999999888 7899986432 34444444431 122
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEccCChHH
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINALDNVNA 687 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~a 687 (972)
..+. +. .+.+..+|+||.|+.+...
T Consensus 227 ~~~~--------~~--~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 227 VPLD--------EL--LELLNEADVVISATGAPHY 251 (311)
T ss_pred EeHH--------HH--HHHHhcCCEEEECCCCCch
Confidence 1111 11 1335678999999988776
No 420
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=80.51 E-value=11 Score=41.37 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcC-CEEEEEeC
Q 002073 180 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDE 210 (972)
Q Consensus 180 ~VlIvG~-gGlG~EiaKNLvLaGV-g~itLvD~ 210 (972)
+|+|.|. |.+|..+++.|...|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5889985 8999999999999883 46777763
No 421
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=80.51 E-value=1.7 Score=55.00 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=84.6
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHH-HHh--hCCCcEE
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASA-ATS--INPRLNI 652 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~-l~~--inP~~~I 652 (972)
.+|.|||+|.+|+.++-.++..|+ .++++|.+.= .|.| |+.+..-..+. +++ +.+. ..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~------~V~l~d~~~~---~l~~---------~~~~i~~~l~~~~~~g~~~~~-~~ 396 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL------KTVLKDATPA---GLDR---------GQQQVFKGLNKKVKRKKITSL-ER 396 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC------cEEEecCCHH---HHHH---------HHHHHHHHHHHHHHcCCCCHH-HH
Confidence 479999999999999999999999 9999986642 1111 11111111111 110 0000 00
Q ss_pred EEeecccCCCcccccchhccCCCcEEEEcc-CChHHHHHHhhhhhccccc--eEecccCCccce-eEEEeCcccCccCCC
Q 002073 653 EALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYFQKP--LLESGTLGAKCN-TQMVIPHLTENYGAS 728 (972)
Q Consensus 653 ~~~~~~v~~~~e~i~~~~f~~~~DvVi~al-Dn~~aR~~v~~~c~~~~kP--li~sgt~G~~G~-~~viip~~t~~y~~~ 728 (972)
.....++...++ + +-+.++|+||.|+ .+.+.+..+-...-..-.| ++-+.|.+..-. ..-.+.+-.-+.+..
T Consensus 397 ~~~~~~i~~~~~--~--~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~H 472 (737)
T TIGR02441 397 DSILSNLTPTLD--Y--SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMH 472 (737)
T ss_pred HHHHhCeEEeCC--H--HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEe
Confidence 011112221111 1 2257999999985 4666666554444443333 444444432111 000001101111111
Q ss_pred CCCCCCCCCCccccCCCCChhhHHHHHHHHhhhcccCChhhH
Q 002073 729 RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (972)
Q Consensus 729 ~dp~~~~~p~Ctl~~fP~~~~h~i~wAr~~F~~lF~~~~~~~ 770 (972)
--.|....|+.-+-.-|...+.++.++.+++..+ ++.|--+
T Consensus 473 ff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~l-gk~pv~v 513 (737)
T TIGR02441 473 YFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQ-GKVVIVV 513 (737)
T ss_pred ccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHC-CCeEEEE
Confidence 1112223455555556788888999988876544 5555433
No 422
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=80.46 E-value=2.2 Score=45.95 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=34.8
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.|+..+|+|.|.|.+|..+|+.|...|.+-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 57889999999999999999999999999999998653
No 423
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=80.43 E-value=7.3 Score=38.49 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=45.4
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
.+.||.|||+|-+|..+++.|...|. .|.-+ |. .+...++.+...-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~------~v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~ 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH------EVVGV---------------YS-------RSPASAERAAAFIGAGAIL 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS------EEEEE---------------SS-------CHH-HHHHHHC--TT----
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC------eEEEE---------------Ee-------CCccccccccccccccccc
Confidence 46789999999999999999999997 44432 11 1122334444444433222
Q ss_pred EeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhc
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY 697 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~ 697 (972)
.. .+..+..|+||-|+-+-.........+..
T Consensus 61 ~~-------------~~~~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 61 DL-------------EEILRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp -T-------------TGGGCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred cc-------------ccccccCCEEEEEechHHHHHHHHHHHHh
Confidence 11 23456899999888666655555665544
No 424
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.11 E-value=3.1 Score=47.47 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=30.2
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~------~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA------RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 356789999997 8999999999999998 7888764
No 425
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=80.10 E-value=8.5 Score=39.08 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=52.0
Q ss_pred EEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEee
Q 002073 578 VFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (972)
Q Consensus 578 VlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~~ 656 (972)
|+|+|+ |.+|..+++.|...|. +++.+= | . ..|.+. .+.++ ...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~------~V~~~~----------R-----~----~~~~~~--------~~~~~--~~~ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH------EVTALV----------R-----S----PSKAED--------SPGVE--IIQ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS------EEEEEE----------S-----S----GGGHHH--------CTTEE--EEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC------EEEEEe----------c-----C----chhccc--------ccccc--cce
Confidence 789998 9999999999999997 776641 1 1 112222 44444 444
Q ss_pred cccCCCcccccchhccCCCcEEEEccCC----hHHHHHHhhhhhccccc
Q 002073 657 NRVGPETENVFDDTFWENITCVINALDN----VNARLYVDQRCLYFQKP 701 (972)
Q Consensus 657 ~~v~~~~e~i~~~~f~~~~DvVi~alDn----~~aR~~v~~~c~~~~kP 701 (972)
..+... +.+ ..-+.++|.||.++.. ...-..+-+.|...+++
T Consensus 46 ~d~~d~-~~~--~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 46 GDLFDP-DSV--KAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp SCTTCH-HHH--HHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred eeehhh-hhh--hhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 444321 111 2345689999999863 23333455555555554
No 426
>PRK08507 prephenate dehydrogenase; Validated
Probab=80.06 E-value=8.2 Score=42.67 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=27.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-CEEEEEeC
Q 002073 180 NILVSGMQGLGAEIAKNLILAGV-KSVTLHDE 210 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGV-g~itLvD~ 210 (972)
+|.|||+|.+|..+|.+|...|. ..|+.+|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 69999999999999999999996 36777764
No 427
>PRK07102 short chain dehydrogenase; Provisional
Probab=80.05 E-value=5.1 Score=42.71 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=27.6
Q ss_pred CcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 576 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 576 ~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~------~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA------RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC------EEEEEeCC
Confidence 47899995 9999999999999987 78888754
No 428
>PRK00811 spermidine synthase; Provisional
Probab=79.95 E-value=3.5 Score=46.08 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=53.1
Q ss_pred hhhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHH
Q 002073 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (972)
Q Consensus 155 ~~d~~~YsRQi~l~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RA 234 (972)
+-++-.|.+.+.-...-.. -...+||++|+|+ |.-...-|-..++.+|+.+|-|. .-+
T Consensus 56 ~~de~~Y~e~l~h~~~~~~--~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~-------------------~vv 113 (283)
T PRK00811 56 ERDEFIYHEMMTHVPLFAH--PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE-------------------RVV 113 (283)
T ss_pred CcchhhHHHHhhhHHHhhC--CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH-------------------HHH
Confidence 4556677776544332221 2357999999964 43333334446899999998654 234
Q ss_pred HHHHHHHHHhcC----CCEEEEeecCCCh---hhhcCCceEEEc
Q 002073 235 LASVQKLQELNN----AVVLSTLTSKLTK---EQLSDFQAVVFT 271 (972)
Q Consensus 235 ea~~~~L~eLNp----~V~V~~~~~~l~~---e~l~~fdvVV~~ 271 (972)
+.+.+.+.+++. +-+++.+.++... ..-..||+||+-
T Consensus 114 ~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D 157 (283)
T PRK00811 114 EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVD 157 (283)
T ss_pred HHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEEC
Confidence 455666655421 2234444443211 112379999874
No 429
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.93 E-value=5.2 Score=45.86 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=51.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCCC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 258 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l~ 258 (972)
.+|.|+|+|..|+.+|..|+..| .++++..+.-....++.. .......+. -..+.+. +.+. .++.
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~-~~~~~~l~~---------~~~l~~~--i~~t-~d~~ 72 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDN-HRNSRYLGN---------DVVLSDT--LRAT-TDFA 72 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhc-CCCcccCCC---------CcccCCC--eEEE-CCHH
Confidence 57999999999999999999998 466665433222222211 000111110 0011111 2221 1111
Q ss_pred hhhhcCCceEEEcCCCHHHHHHHHHHHHh
Q 002073 259 KEQLSDFQAVVFTDISLDKAIEFDDFCHN 287 (972)
Q Consensus 259 ~e~l~~fdvVV~~~~~~~~~~~ln~~c~~ 287 (972)
+.+...|+||++.-+...+..+.++...
T Consensus 73 -~a~~~aDlVilavps~~~~~vl~~i~~~ 100 (341)
T PRK12439 73 -EAANCADVVVMGVPSHGFRGVLTELAKE 100 (341)
T ss_pred -HHHhcCCEEEEEeCHHHHHHHHHHHHhh
Confidence 3567899999998877666666665443
No 430
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=79.93 E-value=1.6 Score=48.86 Aligned_cols=35 Identities=14% Similarity=0.434 Sum_probs=31.3
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|.+++++|+|+|.+|..+++.|..+|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~------~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA------RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678999999999999999999999997 7888764
No 431
>PRK06398 aldose dehydrogenase; Validated
Probab=79.91 E-value=4.3 Score=44.00 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=47.5
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHH-HHHHHHHHhhCCC
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAATSINPR 649 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks-~vaa~~l~~inP~ 649 (972)
.|++++++|.|+ |+||.++++.|+..|. ++++++.+.-+.. +..+-..|+..+.+ +.+.+.+.+....
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~------~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS------NVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356789999995 7999999999999997 8888876542211 22233457766543 3334444444444
Q ss_pred cEEEEee
Q 002073 650 LNIEALQ 656 (972)
Q Consensus 650 ~~I~~~~ 656 (972)
+.+-.+.
T Consensus 73 id~li~~ 79 (258)
T PRK06398 73 IDILVNN 79 (258)
T ss_pred CCEEEEC
Confidence 4444443
No 432
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=79.89 E-value=5.9 Score=47.04 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=28.6
Q ss_pred cCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 575 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 575 ~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
..||+|.|+ |-||+.+++.|...|. +++++|.+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~------~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD------EVIVIDNF 153 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 468999995 8899999999999987 88888754
No 433
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.86 E-value=4.9 Score=49.73 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=63.0
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
+.+|+|+|.|-+|..+++.|...|+ +++++|.|.- +++ .+++. +. ..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~----~~~~~--g~--~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM------RITVLERDIS-------------------AVN----LMRKY--GY--KV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHH----HHHhC--CC--eE
Confidence 5689999999999999999999998 8999998751 122 22221 12 23
Q ss_pred eecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhcc
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 698 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~ 698 (972)
+..+.+ ..+++...-.+++|.||.++||.+.-..+-..++..
T Consensus 447 ~~GDat--~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 447 YYGDAT--QLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred EEeeCC--CHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 333333 233444555678999999999998887777777654
No 434
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=79.85 E-value=4.5 Score=45.85 Aligned_cols=33 Identities=36% Similarity=0.445 Sum_probs=29.3
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
-.+|.|+|.|-.|+-||..++.+|. .|+++|..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence 3689999999999999999999776 79999875
No 435
>PLN02427 UDP-apiose/xylose synthase
Probab=79.83 E-value=8.8 Score=44.36 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=28.8
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 175 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 175 kL~~s~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
+++..+|||.| .|-+|+.+++.|+..|--.|+.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 45567899998 5899999999999985336777774
No 436
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=79.79 E-value=1.8 Score=44.06 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=25.9
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.+|.+||+|..|+.++++|+..|. .+++.|.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~------~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY------EVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT------EEEEEES
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC------eEEeecc
Confidence 479999999999999999999998 7888763
No 437
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=79.75 E-value=5.3 Score=45.45 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=29.1
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 176 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 176 L~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
+++.+|||.|. |.+|+.+++.|+..|- +|+++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 45689999995 7799999999999996 67777754
No 438
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=79.72 E-value=2.5 Score=48.21 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHH-HccccCCCCceEEEEc
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITD 611 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa-~~Gv~~~~~g~i~iiD 611 (972)
.|..+++.|||.|.||.++++.+. -.|+ ++...|
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm------~V~~~~ 176 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM------PILYNA 176 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC------EEEEEC
Confidence 588999999999999999999986 5555 666655
No 439
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=79.71 E-value=2.2 Score=47.17 Aligned_cols=115 Identities=12% Similarity=0.155 Sum_probs=66.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhc---CCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 178 ASNILVSGMQGLGAEIAKNLILAG---VKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLvLaG---Vg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
..||.|||||.+|..|++.|..-+ +.-..+.|.+.-....+. +..++-...+.|....|++-|++-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----------GRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----------ccCcccCCHHHHhhcCCCEEEECCC
Confidence 358999999999999999986533 333334444321111111 1112222244455566777776643
Q ss_pred cCC----Chhhhc-CCceEEEcCC---CHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 255 SKL----TKEQLS-DFQAVVFTDI---SLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 255 ~~l----~~e~l~-~fdvVV~~~~---~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
-.. -+..|+ +.|+||.+.. +.+...++.+.|++++..+.+-.+...|+
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGl 127 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGL 127 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhH
Confidence 321 234565 7899998754 55577789999999874344433334444
No 440
>PLN00106 malate dehydrogenase
Probab=79.70 E-value=5.4 Score=45.56 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred hcCeEEEEcC-ChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEE-e
Q 002073 177 FASNILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST-L 253 (972)
Q Consensus 177 ~~s~VlIvG~-gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~-~ 253 (972)
...+|+|+|+ |.+|+.+|-.|++.|+ ..+.|+|-+. ...+ +--|+.-++.+.+.. .
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-----~~g~----------------a~Dl~~~~~~~~i~~~~ 75 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-----TPGV----------------AADVSHINTPAQVRGFL 75 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-----CCee----------------EchhhhCCcCceEEEEe
Q ss_pred ecCCChhhhcCCceEEEc
Q 002073 254 TSKLTKEQLSDFQAVVFT 271 (972)
Q Consensus 254 ~~~l~~e~l~~fdvVV~~ 271 (972)
...--.+.+++.|+||.+
T Consensus 76 ~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 76 GDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCCHHHHcCCCCEEEEe
No 441
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=79.67 E-value=1.1 Score=49.65 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=27.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHh--cCCEEEEEeCC
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILA--GVKSVTLHDEG 211 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLa--GVg~itLvD~d 211 (972)
|...+|.|+|+|.+|..++++|... |+.-+.++|.+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 4457999999999999999999863 55434466654
No 442
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=79.67 E-value=4.8 Score=47.61 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=69.2
Q ss_pred CcEEEEcCCcchH-HHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 576 AKVFIVGSGALGC-EFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 576 ~kVlIVGaGgiG~-e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
.||.|||+|+.-. ++++.|++..- .-+.++|+++|-|. ...|.. =...+.+.+.+.++.++|++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~-~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~ 65 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYE-ELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHL 65 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccc-cCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEE
Confidence 3799999999754 67777776311 00228999999774 333222 12345566667777788776
Q ss_pred eecccCCCcccccchhccCCCcEEEEcc--CChHHHHHHhhhhhccccceEecccCCccc
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINAL--DNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~al--Dn~~aR~~v~~~c~~~~kPli~sgt~G~~G 712 (972)
..++ .+-+++.|+||+++ ...++|..-.+...++++-- .-|.|..|
T Consensus 66 t~d~----------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~g--qET~G~GG 113 (419)
T cd05296 66 TTDR----------REALEGADFVFTQIRVGGLEARALDERIPLKHGVIG--QETTGAGG 113 (419)
T ss_pred eCCH----------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCcc--ccCCCcch
Confidence 5432 23467899999975 34566666666667776542 45666666
No 443
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=79.66 E-value=2 Score=47.89 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=30.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+++++|+|+||.+..++-.|+..|+ .+|+|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGF-----TDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCC
Confidence 3589999999999999999999999 899998643
No 444
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.60 E-value=11 Score=42.62 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
...+|+|.|+|++|..++.-+...|.+++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999888999988888774
No 445
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=79.54 E-value=5.8 Score=44.09 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=52.8
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHc--cccCCCCceEE-EEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALM--GVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~--Gv~~~~~g~i~-iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~ 650 (972)
...||.|||+|.+|..++++|... |+ +++ +.|.+. .|++.+++. .+ ..
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~------el~aV~dr~~-------------------~~a~~~a~~---~g-~~ 55 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGL------TLSAVAVRDP-------------------QRHADFIWG---LR-RP 55 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCe------EEEEEECCCH-------------------HHHHHHHHh---cC-CC
Confidence 346899999999999999999864 44 444 444321 233333322 11 00
Q ss_pred EEEEeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceE
Q 002073 651 NIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 703 (972)
Q Consensus 651 ~I~~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli 703 (972)
. ...+. ++++...|+|+.|+-+..-+ .+...+...+++++
T Consensus 56 ~-------~~~~~-----eell~~~D~Vvi~tp~~~h~-e~~~~aL~aGk~Vi 95 (271)
T PRK13302 56 P-------PVVPL-----DQLATHADIVVEAAPASVLR-AIVEPVLAAGKKAI 95 (271)
T ss_pred c-------ccCCH-----HHHhcCCCEEEECCCcHHHH-HHHHHHHHcCCcEE
Confidence 0 01111 23456789999998765544 44466677888887
No 446
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=79.53 E-value=3.2 Score=47.15 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcC-CEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 002073 180 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (972)
Q Consensus 180 ~VlIvG~-gGlG~EiaKNLvLaGV-g~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l 257 (972)
+|.|+|+ |.+|+.+|-.|+..|+ ..+.|+| +-+ |+.-+--|+...+.+.|......
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~D-------------------i~~--a~g~a~DL~~~~~~~~i~~~~~~- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYD-------------------IAG--AAGVAADLSHIPTAASVKGFSGE- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEec-------------------CCC--CcEEEchhhcCCcCceEEEecCC-
Q ss_pred C--hhhhcCCceEEEc
Q 002073 258 T--KEQLSDFQAVVFT 271 (972)
Q Consensus 258 ~--~e~l~~fdvVV~~ 271 (972)
+ .+.+++.|+||.|
T Consensus 59 ~~~~~~~~daDivvit 74 (312)
T TIGR01772 59 EGLENALKGADVVVIP 74 (312)
T ss_pred CchHHHcCCCCEEEEe
No 447
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.44 E-value=7.9 Score=41.72 Aligned_cols=25 Identities=8% Similarity=0.344 Sum_probs=22.6
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccc
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGV 599 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv 599 (972)
..||.|||+|.+|..+++.|+..|.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCC
Confidence 5689999999999999999998873
No 448
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=79.34 E-value=1.9 Score=49.11 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=32.5
Q ss_pred HHHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEc
Q 002073 570 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 611 (972)
Q Consensus 570 q~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD 611 (972)
.+.|++++|.|||.|.+|..+++||...|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~------~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV------EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC------EEEEEE
Confidence 468899999999999999999999999999 777765
No 449
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=79.33 E-value=6.5 Score=43.48 Aligned_cols=89 Identities=21% Similarity=0.190 Sum_probs=51.1
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEEe
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~~ 655 (972)
.||.|||+|.+|..+++.|...+... .-+.++|.+. .+++.+++ ... . ..+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~---elv~v~d~~~-------------------~~a~~~a~---~~~--~--~~~ 52 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINA---ELYAFYDRNL-------------------EKAENLAS---KTG--A--KAC 52 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCe---EEEEEECCCH-------------------HHHHHHHH---hcC--C--eeE
Confidence 47999999999999999998764200 2234555431 23333333 111 1 111
Q ss_pred ecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccccceEe
Q 002073 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 704 (972)
Q Consensus 656 ~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~kPli~ 704 (972)
.+ + ++++.+.|+|+.|+... +..-+-..+...++.++.
T Consensus 53 -----~~----~-~ell~~~DvVvi~a~~~-~~~~~~~~al~~Gk~Vvv 90 (265)
T PRK13304 53 -----LS----I-DELVEDVDLVVECASVN-AVEEVVPKSLENGKDVII 90 (265)
T ss_pred -----CC----H-HHHhcCCCEEEEcCChH-HHHHHHHHHHHcCCCEEE
Confidence 11 1 23347899999998544 444444455567787764
No 450
>PRK06720 hypothetical protein; Provisional
Probab=79.32 E-value=4.6 Score=41.61 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
++.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~------~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA------KVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 367788999997 5699999999999996 78888755
No 451
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=79.32 E-value=6.1 Score=44.34 Aligned_cols=112 Identities=23% Similarity=0.259 Sum_probs=68.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecCC-
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL- 257 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~l- 257 (972)
.+|.+||+|-.|.-+|+||+.+|. .++++|.+.-....+-.. -|-.-+...++... .-++-+......-
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~-------~Ga~~a~s~~eaa~--~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAA-------AGATVAASPAEAAA--EADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHH-------cCCcccCCHHHHHH--hCCEEEEecCCHHH
Confidence 479999999999999999999995 899998754331111111 12111111111111 1244454444321
Q ss_pred ------C-hhh---hcCCceEEEcC-CCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 258 ------T-KEQ---LSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 258 ------~-~e~---l~~fdvVV~~~-~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
- ... ++.=.+||++. .+.+...++.+...+++ ..|+.+-+.|-
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G--~~~lDAPVsGg 124 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG--LEFLDAPVSGG 124 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC--CcEEecCccCC
Confidence 0 112 22345666654 57888889999999999 89998888774
No 452
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.27 E-value=3.6 Score=49.06 Aligned_cols=121 Identities=20% Similarity=0.274 Sum_probs=69.6
Q ss_pred hcCeEEEEcCChHHHH-HHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 177 FASNILVSGMQGLGAE-IAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~E-iaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
...+|+|+|+|+.|.. +|+-|...|. .+++.|.... .. .+.|.+. .+.+. .+
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~------------------~~----~~~l~~~--gi~~~--~~ 58 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKES------------------AV----TQRLLEL--GAIIF--IG 58 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCC------------------hH----HHHHHHC--CCEEe--CC
Confidence 4568999999999999 7999999998 5888875431 00 1234443 34443 22
Q ss_pred CCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEecCCCCCCcceeeccc
Q 002073 256 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 332 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~~f~v~d~~ge~p~~~~I~~I 332 (972)
..++.+.++|+||.+.. +.. ...-..+++++ +|++.-.-. .+.+.. -..-..|.=++|....+.++.+|
T Consensus 59 -~~~~~~~~~d~vv~spgi~~~--~~~~~~a~~~~--i~i~~~~e~--~~~~~~-~~~~I~ITGTnGKTTTt~ll~~i 128 (461)
T PRK00421 59 -HDAENIKDADVVVYSSAIPDD--NPELVAARELG--IPVVRRAEM--LAELMR-FRTSIAVAGTHGKTTTTSLLAHV 128 (461)
T ss_pred -CCHHHCCCCCEEEECCCCCCC--CHHHHHHHHCC--CcEEeHHHH--HHHHHc-cCcEEEEECCCCHHHHHHHHHHH
Confidence 24556778999998764 222 11234567788 888742111 111110 01123334456666665666555
No 453
>PRK07814 short chain dehydrogenase; Provisional
Probab=79.25 E-value=4.1 Score=44.20 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=29.9
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~------~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA------DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999996 6799999999999997 88888754
No 454
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=79.22 E-value=2.7 Score=46.79 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=30.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
.+|+|+|+||.+..++-.|...|+++|+|++.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999999999999999974
No 455
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=79.20 E-value=1.9 Score=49.49 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=32.9
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEc
Q 002073 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 611 (972)
Q Consensus 571 ~kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD 611 (972)
..|.+++|+|||+|-+|.-++++|...|+ .+|+|+.
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~-----~~i~v~n 205 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGY-----SRITFCS 205 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCC-----CEEEEEc
Confidence 34789999999999999999999999999 8999983
No 456
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=79.04 E-value=1.9 Score=49.28 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.|..++|.|||+|.+|..+++.|...|. +++..|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~------~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA------TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 3778899999999999999999999887 88888754
No 457
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.01 E-value=6.5 Score=45.26 Aligned_cols=90 Identities=14% Similarity=0.014 Sum_probs=58.2
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
...+|+|+|+|++|.-.+.-+-+.|...|.++|.+.- |.+.+++. ...-.+.....+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~-------------------Rl~~A~~~----~g~~~~~~~~~~ 224 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE-------------------RLELAKEA----GGADVVVNPSED 224 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-------------------HHHHHHHh----CCCeEeecCccc
Confidence 3348999999999999999999999999999985331 32222221 111111111110
Q ss_pred -CCh---hhh--cCCceEEEcCCCHHHHHHHHHHHHhcC
Q 002073 257 -LTK---EQL--SDFQAVVFTDISLDKAIEFDDFCHNHQ 289 (972)
Q Consensus 257 -l~~---e~l--~~fdvVV~~~~~~~~~~~ln~~c~~~~ 289 (972)
... +.- .++|+|+.|..+........++++..+
T Consensus 225 ~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG 263 (350)
T COG1063 225 DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGG 263 (350)
T ss_pred cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCC
Confidence 000 111 369999999998777777888888887
No 458
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=79.01 E-value=5.4 Score=46.40 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=29.0
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCC
Q 002073 179 SNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEG 211 (972)
Q Consensus 179 s~VlIvG-~gGlG~EiaKNLvLaGVg~itLvD~d 211 (972)
.+|+|+| +|.+|..+|+.|..+|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6899998 99999999999999995 79999863
No 459
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=78.88 E-value=8.6 Score=44.42 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEE--EeCCc--cCccCCccccccCcC-----------ccCchH
Q 002073 169 GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTL--HDEGT--VELWDLSSNFVFSDN-----------DIGKNR 233 (972)
Q Consensus 169 G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itL--vD~d~--V~~~DL~~qffl~~~-----------DIGk~R 233 (972)
+.+.++--.+.+|.|+|+||-|+-++.+|...|+..+.+ +|.|. ....+...-..+.++ ++|+.-
T Consensus 8 ~~~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~ 87 (349)
T TIGR00065 8 FRELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKA 87 (349)
T ss_pred hhhhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHH
Q ss_pred HHHHHHHHHHhcCCCEEEEeecCCChhhhcCCceEEEcCC-----CHHHHHHHHHHHHhcCCCceeEEeeec
Q 002073 234 ALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI-----SLDKAIEFDDFCHNHQPAISFIKAEVR 300 (972)
Q Consensus 234 Aea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~~~~-----~~~~~~~ln~~c~~~~~~IpfI~a~~~ 300 (972)
|+...+++++ .++++|.|+++.. ..-..-.+.+++++.+ ++.+..-+.
T Consensus 88 aee~~d~Ir~-----------------~le~~D~vfI~aglGGGTGSG~apvia~~ake~~--~l~vaivt~ 140 (349)
T TIGR00065 88 AEESRDEIRK-----------------LLEGADMVFITAGMGGGTGTGAAPVVAKIAKELG--ALTVAVVTK 140 (349)
T ss_pred HHHHHHHHHH-----------------HHhCCCEEEEEEeccCccchhHHHHHHHHHHHcC--CCEEEEEeC
No 460
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=78.82 E-value=1.9 Score=51.15 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
.+|+|||+|-.|||+|..|++.|+ +++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~------~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV------PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC------cEEEEecc
Confidence 379999999999999999999998 89999864
No 461
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.79 E-value=9.7 Score=48.12 Aligned_cols=108 Identities=13% Similarity=0.100 Sum_probs=62.6
Q ss_pred cCeEEEEcCChHHHHHHHHHH-HhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCC---------
Q 002073 178 ASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA--------- 247 (972)
Q Consensus 178 ~s~VlIvG~gGlG~EiaKNLv-LaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~--------- 247 (972)
-++|.|||+|-.|+.||-.++ .+|+ .|+++|.+. +.+. -++.+++...+++.+....
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~---~~l~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 375 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP---QGIN---------HALKYSWDLLDKKVKRRHLKPSERDKQM 375 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH---HHHH---------HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 367999999999999999999 8897 899999743 1111 1222333322222221110
Q ss_pred CEEEEeecCCChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecc
Q 002073 248 VVLSTLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (972)
Q Consensus 248 V~V~~~~~~l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G 301 (972)
-.++..+ ++ +-+++.|+||-+.. +++.+..+-.-..+.-+|=.++.+.|.+
T Consensus 376 ~~i~~~~-~~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 376 ALISGTT-DY--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred hcEEEeC-Ch--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 0222222 22 35689999998864 6666655555444443333455555544
No 462
>PRK07856 short chain dehydrogenase; Provisional
Probab=78.76 E-value=5.6 Score=42.77 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=31.1
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~------~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA------TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCCh
Confidence 56789999995 8899999999999997 788888754
No 463
>PRK06125 short chain dehydrogenase; Provisional
Probab=78.71 E-value=5.8 Score=42.82 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=30.1
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+.+++++|.|+ |+||.++++.|+..|. ++++++.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~------~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC------HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 56789999997 7899999999999997 78887654
No 464
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.65 E-value=1.8 Score=51.06 Aligned_cols=36 Identities=33% Similarity=0.584 Sum_probs=32.3
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+.+.+|+|+|+|.+|..+++.|...|+ .+++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-----RKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-----CeEEEEeCC
Confidence 678999999999999999999999998 789988643
No 465
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.60 E-value=2.6 Score=47.23 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=32.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
.|.+++|+|+|+|++|..+|+.|...|. +|+++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999999999999999999999997 8999875
No 466
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.52 E-value=4.2 Score=45.09 Aligned_cols=93 Identities=6% Similarity=0.095 Sum_probs=54.8
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
..+|.+||+|.+|..+++.|...|+. ...+++++|.+. ..+++.+++. . .+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~--~~~~v~v~~r~~------------------~~~~~~l~~~----~-g~~~~- 56 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVV--KGEQITVSNRSN------------------ETRLQELHQK----Y-GVKGT- 56 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC--CcceEEEECCCC------------------HHHHHHHHHh----c-CceEe-
Confidence 45899999999999999999998831 113455543210 0122222221 1 22221
Q ss_pred eecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhc--cccceEe
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--FQKPLLE 704 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~--~~kPli~ 704 (972)
.+. .+..+..|+||-|+-....+..+...... .++.+|+
T Consensus 57 ------~~~-----~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 57 ------HNK-----KELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred ------CCH-----HHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 111 12345789999999988888877766532 2344555
No 467
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=78.46 E-value=2.2 Score=45.96 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=34.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
.|+.++|+|.|.|.+|..+++.|...|. ..+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-----~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-----KVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-----EEEEEEcCCC
Confidence 5678999999999999999999999998 7888888654
No 468
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=78.44 E-value=4.4 Score=43.94 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
++.+++++|.|+ |+||.++++.|+..|. +++++|.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~------~vv~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGA------TIVFNDI 42 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeC
Confidence 466788999996 8899999999999997 6777753
No 469
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.44 E-value=5.4 Score=48.08 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=57.3
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
.+.+|+|+|+|..|..+++-|...|. .+++.|... .+ .+.++++ .+. .....
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~----~~~l~~~--g~~--~~~~~ 62 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DA----LRPHAER--GVA--TVSTS 62 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HH----HHHHHhC--CCE--EEcCc
Confidence 46799999999999999999999996 788888421 01 1123332 222 22332
Q ss_pred CChhhhcCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEE
Q 002073 257 LTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 296 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~ 296 (972)
...+.+.++|+||.+.. +.. ..+-..+++.+ ||++.
T Consensus 63 ~~~~~l~~~D~VV~SpGi~~~--~p~~~~a~~~g--i~v~~ 99 (488)
T PRK03369 63 DAVQQIADYALVVTSPGFRPT--APVLAAAAAAG--VPIWG 99 (488)
T ss_pred chHhHhhcCCEEEECCCCCCC--CHHHHHHHHCC--CcEee
Confidence 24456778999998764 222 22345668888 88873
No 470
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.37 E-value=2.1 Score=47.77 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=29.7
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
++|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~------~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM------DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999997 899998653
No 471
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.34 E-value=2.1 Score=47.81 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=29.9
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY------DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999998 899998654
No 472
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.30 E-value=7.9 Score=43.03 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=50.4
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
+.+|.+||+|-+|..+++.|...|.. ...+|++.|.+. .+.+.+++. . +++ .
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~--~~~~I~v~~r~~-------------------~~~~~l~~~---~--g~~--~ 53 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIV--SPDQIICSDLNV-------------------SNLKNASDK---Y--GIT--I 53 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCC--CCceEEEECCCH-------------------HHHHHHHHh---c--CcE--E
Confidence 45899999999999999999998851 113566664321 222222221 1 122 1
Q ss_pred eecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhh
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRC 695 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c 695 (972)
.. +. .+..+++|+||-|+-....+..+....
T Consensus 54 ~~-----~~-----~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 54 TT-----NN-----NEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred eC-----Cc-----HHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 11 11 123457899999998766666666654
No 473
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=78.16 E-value=9.7 Score=42.12 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=25.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhc--CCEEEEEeCC
Q 002073 180 NILVSGMQGLGAEIAKNLILAG--VKSVTLHDEG 211 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaG--Vg~itLvD~d 211 (972)
+|.|+|+|.+|..+++.|...+ +.-+.++|.+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 7999999999999999998764 4445566654
No 474
>PRK06181 short chain dehydrogenase; Provisional
Probab=78.16 E-value=4.9 Score=43.35 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=26.8
Q ss_pred CcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 576 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 576 ~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.+|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~------~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA------QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 57899997 9999999999999886 7888764
No 475
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.11 E-value=5.6 Score=46.99 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=70.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 176 L~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
+.+++|+|+|.|+.|..+++-|...|. +++..|.... . .. ...|.+ .+.+ ..+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~------------~-----~~----~~~l~~---g~~~--~~~ 56 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRIT------------P-----PG----LDKLPE---NVER--HTG 56 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCC------------c-----hh----HHHHhc---CCEE--EeC
Confidence 456789999999999999999888897 7899885420 0 00 112321 3343 233
Q ss_pred CCChhhhcCCceEEEcCCCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEecCCCCCCcceeeccc
Q 002073 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 332 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~~~IpfI~a~~~G~~G~vf~dfg~~f~v~d~~ge~p~~~~I~~I 332 (972)
..++..+..+|+||....-... ...-..+++.+ +|++. .. -+++.++ + .+-..|.=++|....+.+|.+|
T Consensus 57 ~~~~~~~~~~d~vv~spgi~~~-~~~~~~a~~~g--~~v~~-~~-el~~~~~-~-~~~I~VTGTnGKTTTt~ll~~i 126 (438)
T PRK03806 57 SLNDEWLLAADLIVASPGIALA-HPSLSAAADAG--IEIVG-DI-ELFCREA-Q-APIVAITGSNGKSTVTTLVGEM 126 (438)
T ss_pred CCCHHHhcCCCEEEECCCCCCC-CHHHHHHHHCC--CeEEE-HH-HHHhhhc-C-CCEEEEeCCCCHHHHHHHHHHH
Confidence 3344556788998887642111 22344568889 88543 21 2222222 1 1223344456666555566555
No 476
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.07 E-value=7.7 Score=49.05 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.+|.|||+|-.|..||-.++.+|. .|+|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999998 899999653
No 477
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=78.06 E-value=5.7 Score=44.21 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=28.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 180 ~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
+|.|||+|-+|..+|.+|...|. .|+++|.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 58999999999999999999996 788988653
No 478
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=78.02 E-value=2.1 Score=49.88 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=30.7
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~------~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY------QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC------eEEEEeCCC
Confidence 489999999999999999999997 899999876
No 479
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=77.99 E-value=7.1 Score=42.75 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=29.3
Q ss_pred cEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCc
Q 002073 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (972)
Q Consensus 577 kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~ 614 (972)
+|+|||+|..|.+.|..|++.|. +++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~------~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANL------KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC------CEEEEeccC
Confidence 68999999999999999999998 799999754
No 480
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=77.89 E-value=2.8 Score=48.04 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=34.6
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 175 kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.|.+++|||||.|-+|..+||+|...|++.|++.....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 48899999999999999999999999999999986543
No 481
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=77.86 E-value=8.8 Score=46.35 Aligned_cols=123 Identities=14% Similarity=0.168 Sum_probs=68.6
Q ss_pred CcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCccccc---HHHHHHHHHHhh-CCCcE
Q 002073 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA---KSTVAASAATSI-NPRLN 651 (972)
Q Consensus 576 ~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~---Ks~vaa~~l~~i-nP~~~ 651 (972)
.+|.+||+|..|..+++||+..|. ++++.|.+.=....+... ...-|-. -+..+++.+..+ .|++=
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~------~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF------PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC------eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEE
Confidence 479999999999999999999998 899987652111111000 0000110 112233333322 24443
Q ss_pred EEEeecccCCCcccccc--hhccCCCcEEEEccCC-hHHHHHHhhhhhccccceEecccCCc
Q 002073 652 IEALQNRVGPETENVFD--DTFWENITCVINALDN-VNARLYVDQRCLYFQKPLLESGTLGA 710 (972)
Q Consensus 652 I~~~~~~v~~~~e~i~~--~~f~~~~DvVi~alDn-~~aR~~v~~~c~~~~kPli~sgt~G~ 710 (972)
|..+... ...+.+++ ...++.=|+|||+.-. ++.-..+...+...++.+++++..|.
T Consensus 77 i~~v~~~--~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 77 IILVKAG--APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred EEECCCc--HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 4333221 11122221 1223455799997554 34444456777888999999998875
No 482
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.79 E-value=5.7 Score=49.63 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=30.8
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
...+|+|||+|..|-..|..|+++|. +++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEecC
Confidence 46799999999999999999999998 79998864
No 483
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.77 E-value=8.1 Score=41.51 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=29.1
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 175 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 175 kL~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
++.+++|+|.|. ||+|.++++.|+..|. ++.+.+.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 456788999984 7999999999999998 5777764
No 484
>PRK08643 acetoin reductase; Validated
Probab=77.74 E-value=5.7 Score=42.69 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=27.9
Q ss_pred cCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 575 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 575 ~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+++++|+|+ |+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~------~v~~~~r~ 35 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF------KVAIVDYN 35 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 467889885 8999999999999997 78888754
No 485
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.64 E-value=5.4 Score=48.86 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=53.0
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEEE
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~~ 654 (972)
+-+|+|+|+|.+|.++++.|...|. +++++|.|.- +++.+ ++. + +.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~------~vvvId~d~~-------------------~~~~~----~~~--g--~~~ 463 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI------PLVVIETSRT-------------------RVDEL----RER--G--IRA 463 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC------CEEEEECCHH-------------------HHHHH----HHC--C--CeE
Confidence 6789999999999999999999998 8999997752 22222 221 1 233
Q ss_pred eecccCCCcccccchhccCCCcEEEEccCChHHH
Q 002073 655 LQNRVGPETENVFDDTFWENITCVINALDNVNAR 688 (972)
Q Consensus 655 ~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR 688 (972)
+..+.+ +++.+.+.-.+++|.|+-++++...-
T Consensus 464 i~GD~~--~~~~L~~a~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 464 VLGNAA--NEEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred EEcCCC--CHHHHHhcCccccCEEEEEcCChHHH
Confidence 333333 23344445567899888887665443
No 486
>PRK10537 voltage-gated potassium channel; Provisional
Probab=77.60 E-value=5.1 Score=47.00 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=58.6
Q ss_pred hcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCcEEE
Q 002073 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (972)
Q Consensus 574 ~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~~~I~ 653 (972)
++.+++|+|.|.+|.++++.|...|. .++++|.|.++.. + ..+..
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~------~vvVId~d~~~~~------~---------------------~~g~~-- 283 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ------AVTVIVPLGLEHR------L---------------------PDDAD-- 283 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC------CEEEEECchhhhh------c---------------------cCCCc--
Confidence 36789999999999999999998887 7888887632210 0 01111
Q ss_pred EeecccCCCcccccchhccCCCcEEEEccCChHHHHHHhhhhhccc
Q 002073 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQ 699 (972)
Q Consensus 654 ~~~~~v~~~~e~i~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~ 699 (972)
.+..+. ..++.+...-.++++.|+.++||.+.-..+-..++..+
T Consensus 284 vI~GD~--td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 284 LIPGDS--SDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred EEEeCC--CCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 222222 22344445556789999999988776666665555544
No 487
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=77.50 E-value=6.5 Score=43.66 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=27.2
Q ss_pred cEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 577 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 577 kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+|+|.|+ |.||..+++.|+..|. +++++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~------~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE------EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC------EEEEEEec
Confidence 6999995 9999999999999986 78888764
No 488
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.42 E-value=6 Score=42.80 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=29.5
Q ss_pred HHhcCcEEEEcCC---cchHHHHHHHHHccccCCCCceEEEEc
Q 002073 572 KLEDAKVFIVGSG---ALGCEFLKNVALMGVSCGNQGKLTITD 611 (972)
Q Consensus 572 kL~~~kVlIVGaG---giG~e~lknLa~~Gv~~~~~g~i~iiD 611 (972)
+|.+++++|.|++ |||.++++.|+..|. ++++++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~------~vi~~~ 39 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA------DIFFTY 39 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC------eEEEEe
Confidence 5778999999984 899999999999998 677765
No 489
>PRK06046 alanine dehydrogenase; Validated
Probab=77.27 E-value=9 Score=43.69 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=53.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHH-HhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 002073 177 FASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLv-LaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~ 255 (972)
...+|.|+|+|+.|...+.++. ..+++.+.++|.+. .+++..++++++..+ +.+....
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~~-~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVVG-CDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEeC-
Confidence 3578999999999999999998 56899999987532 366666777765433 4444433
Q ss_pred CCChhhhcCCceEEEcCCC
Q 002073 256 KLTKEQLSDFQAVVFTDIS 274 (972)
Q Consensus 256 ~l~~e~l~~fdvVV~~~~~ 274 (972)
++ ++.+. .|+||.|+.+
T Consensus 187 ~~-~~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 DI-EEACD-CDILVTTTPS 203 (326)
T ss_pred CH-HHHhh-CCEEEEecCC
Confidence 22 34455 8999988765
No 490
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=77.21 E-value=5.9 Score=44.45 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=29.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.+|.|||+|-+|..+|.+|+..|. .|+++|.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 379999999999999999999996 789998754
No 491
>PRK07774 short chain dehydrogenase; Provisional
Probab=77.14 E-value=3.1 Score=44.43 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=30.2
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCC
Q 002073 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (972)
Q Consensus 573 L~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D 613 (972)
+++++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~------~vi~~~r~ 39 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA------SVVVADIN 39 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999997 9999999999999997 78887654
No 492
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.13 E-value=9.1 Score=42.86 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=51.8
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 002073 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (972)
Q Consensus 177 ~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~~~ 256 (972)
...+|+|+|+|++|...+.-+...|...+.++|.+.- |.+.+.. ..-+|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~-------------------rl~~a~~-~~~i~~~--------- 194 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPR-------------------RRDGATG-YEVLDPE--------- 194 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-------------------HHHhhhh-ccccChh---------
Confidence 4568999999999999998888889988877764211 1111110 0001110
Q ss_pred CChhhhcCCceEEEcCCCHHHHHHHHHHHHhcC
Q 002073 257 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 289 (972)
Q Consensus 257 l~~e~l~~fdvVV~~~~~~~~~~~ln~~c~~~~ 289 (972)
++.-..+|+|+.|..........-+.++..+
T Consensus 195 --~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~G 225 (308)
T TIGR01202 195 --KDPRRDYRAIYDASGDPSLIDTLVRRLAKGG 225 (308)
T ss_pred --hccCCCCCEEEECCCCHHHHHHHHHhhhcCc
Confidence 0011368999999987665555566777777
No 493
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=77.08 E-value=24 Score=40.07 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=25.2
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 180 NILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 180 ~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
+|||.|+ |-+|+.+++.|...|=-+|+.+|.
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 6999996 999999999999763237887764
No 494
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=77.05 E-value=2.4 Score=48.47 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=31.6
Q ss_pred cCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcCCcc
Q 002073 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 615 (972)
Q Consensus 575 ~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~I 615 (972)
...|+|||+|.+|+.+|..|++.|. +++|+|.+.+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~------~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL------RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC------eEEEEecccC
Confidence 3569999999999999999999998 8999998764
No 495
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.02 E-value=2.6 Score=51.22 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHHccccCCCCceEEEEcC
Q 002073 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (972)
Q Consensus 572 kL~~~kVlIVGaGgiG~e~lknLa~~Gv~~~~~g~i~iiD~ 612 (972)
.|..++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM------KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 4789999999999999999999998887 7888774
No 496
>PRK08589 short chain dehydrogenase; Validated
Probab=76.95 E-value=8.8 Score=41.97 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEE
Q 002073 173 MRRLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLS 251 (972)
Q Consensus 173 q~kL~~s~VlIvG~-gGlG~EiaKNLvLaGVg~itLvD~d~V~~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~ 251 (972)
|.+|.+++|+|.|. +|+|.++|+.|+..|. ++.+++ .. .+.+...+.+.+.+. ++.
T Consensus 1 m~~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~-------------------r~-~~~~~~~~~~~~~~~--~~~ 57 (272)
T PRK08589 1 MKRLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD-------------------IA-EAVSETVDKIKSNGG--KAK 57 (272)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe-------------------Cc-HHHHHHHHHHHhcCC--eEE
Q ss_pred EeecCCCh------------hhhcCCceEEEc
Q 002073 252 TLTSKLTK------------EQLSDFQAVVFT 271 (972)
Q Consensus 252 ~~~~~l~~------------e~l~~fdvVV~~ 271 (972)
.+..++++ +.+...|++|.+
T Consensus 58 ~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ 89 (272)
T PRK08589 58 AYHVDISDEQQVKDFASEIKEQFGRVDVLFNN 89 (272)
T ss_pred EEEeecCCHHHHHHHHHHHHHHcCCcCEEEEC
No 497
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=76.95 E-value=8.6 Score=48.62 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 002073 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (972)
Q Consensus 179 s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~d~ 212 (972)
.+|.|||+|-.|+.||-.++.+|+ .|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999998 899999754
No 498
>PLN02928 oxidoreductase family protein
Probab=76.92 E-value=2.3 Score=48.94 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=0.0
Q ss_pred hhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 002073 160 LHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (972)
Q Consensus 160 ~YsRQi~l--~G~e~q~kL~~s~VlIvG~gGlG~EiaKNLvLaGVg~itLvD~ 210 (972)
.|.+.++- |+...-..|.+++|+|+|+|.+|.++|+.|.-.|. +|+.+|.
T Consensus 139 ~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 139 EMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred HHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
No 499
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=76.90 E-value=9.3 Score=43.11 Aligned_cols=85 Identities=15% Similarity=0.277 Sum_probs=62.4
Q ss_pred HHHhcCcEEEEcC-CcchHHHHHHHHHccccCCCCceEEEEcCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCC
Q 002073 571 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 649 (972)
Q Consensus 571 ~kL~~~kVlIVGa-GgiG~e~lknLa~~Gv~~~~~g~i~iiD~D~Ie~SNLnRQfLf~~~dVGk~Ks~vaa~~l~~inP~ 649 (972)
+++. .=.+|.|+ .|||-++++-||+-|+ ++.||= | .+.|-+..++.+.+..+
T Consensus 46 ~~~g-~WAVVTGaTDGIGKayA~eLAkrG~------nvvLIs----------R---------t~~KL~~v~kEI~~~~~- 98 (312)
T KOG1014|consen 46 EKLG-SWAVVTGATDGIGKAYARELAKRGF------NVVLIS----------R---------TQEKLEAVAKEIEEKYK- 98 (312)
T ss_pred HhcC-CEEEEECCCCcchHHHHHHHHHcCC------EEEEEe----------C---------CHHHHHHHHHHHHHHhC-
Confidence 3444 44566786 7899999999999999 688762 2 25788999999999998
Q ss_pred cEEEEeecccCCCcccccc--hhccCCCc--EEEEccC
Q 002073 650 LNIEALQNRVGPETENVFD--DTFWENIT--CVINALD 683 (972)
Q Consensus 650 ~~I~~~~~~v~~~~e~i~~--~~f~~~~D--vVi~alD 683 (972)
+++..+..+++..++ +|+ .+.+.+.| +.||++.
T Consensus 99 vev~~i~~Dft~~~~-~ye~i~~~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 99 VEVRIIAIDFTKGDE-VYEKLLEKLAGLDVGILVNNVG 135 (312)
T ss_pred cEEEEEEEecCCCch-hHHHHHHHhcCCceEEEEeccc
Confidence 889888888876654 332 23455666 5688764
No 500
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=76.87 E-value=7.8 Score=42.95 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=60.6
Q ss_pred CeEEEEc-CChHHHHHHHHHHH-hcCCEEEEEe-CCccC-ccCCccccccCcCccCchHHHHHHHHHHHhcCCCEEEEee
Q 002073 179 SNILVSG-MQGLGAEIAKNLIL-AGVKSVTLHD-EGTVE-LWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (972)
Q Consensus 179 s~VlIvG-~gGlG~EiaKNLvL-aGVg~itLvD-~d~V~-~~DL~~qffl~~~DIGk~RAea~~~~L~eLNp~V~V~~~~ 254 (972)
-+|.|+| +|..|..+++.+.. .++.=+.++| .+.-. ..|++.. ......|-+-. ...+.+ ...++|-|.+-.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~--~~~~~~gv~~~-~d~~~l-~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGEL--AGIGKVGVPVT-DDLEAV-ETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHh--cCcCcCCceee-CCHHHh-cCCCCEEEECCC
Confidence 3899999 59999999999985 6887788888 32211 1122111 00000110000 001112 122444333221
Q ss_pred cCCChh----hh-cCCceEEEcCC-CHHHHHHHHHHHHhcCCCceeEEeeecce
Q 002073 255 SKLTKE----QL-SDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (972)
Q Consensus 255 ~~l~~e----~l-~~fdvVV~~~~-~~~~~~~ln~~c~~~~~~IpfI~a~~~G~ 302 (972)
-....+ .+ .+..+|+.+.. +.+....|.++|++.+ +|++++..+.+
T Consensus 78 p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g--~~v~~a~NfSl 129 (266)
T TIGR00036 78 PEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAG--IAAVIAPNFSI 129 (266)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCC--ccEEEECcccH
Confidence 111111 12 24577776543 5566777777888877 77777655443
Done!