Query 002074
Match_columns 972
No_of_seqs 314 out of 2057
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02900 alanyl-tRNA synthetas 100.0 1E-248 3E-253 2244.9 92.1 899 48-968 1-935 (936)
2 COG0013 AlaS Alanyl-tRNA synth 100.0 1E-246 2E-251 2167.6 85.7 860 56-971 4-879 (879)
3 KOG0188 Alanyl-tRNA synthetase 100.0 1E-247 3E-252 2079.6 66.4 864 58-971 2-895 (895)
4 TIGR00344 alaS alanine--tRNA l 100.0 3E-234 6E-239 2115.0 85.0 838 62-950 1-851 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 1E-231 3E-236 2100.1 86.5 852 57-971 1-865 (865)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 5E-209 1E-213 1895.9 81.7 794 51-967 49-901 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 8E-208 2E-212 1885.0 81.3 797 50-970 51-899 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 5E-193 1E-197 1674.0 54.1 583 58-797 1-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 3E-175 6E-180 1538.4 15.4 545 62-637 1-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 3E-108 6E-113 853.3 18.9 230 60-306 1-232 (232)
11 COG2872 Predicted metal-depend 100.0 7E-47 1.5E-51 400.4 23.3 226 541-802 11-239 (241)
12 PLN02961 alanine-tRNA ligase 100.0 4.7E-46 1E-50 395.5 25.2 209 567-796 2-222 (223)
13 KOG2105 Predicted metal-depend 100.0 1.1E-42 2.3E-47 364.1 28.1 360 566-969 42-410 (415)
14 PRK12305 thrS threonyl-tRNA sy 99.8 1.3E-17 2.9E-22 200.8 19.0 144 641-802 7-161 (575)
15 PLN02837 threonine-tRNA ligase 99.7 4.1E-17 8.8E-22 197.3 20.2 154 627-801 30-201 (614)
16 PRK00413 thrS threonyl-tRNA sy 99.7 2.2E-16 4.8E-21 192.5 20.3 165 621-803 49-227 (638)
17 PRK12444 threonyl-tRNA synthet 99.6 3.6E-15 7.8E-20 181.8 20.5 143 641-801 73-229 (639)
18 TIGR00418 thrS threonyl-tRNA s 99.6 2.7E-14 5.8E-19 171.9 15.7 141 644-801 1-154 (563)
19 PLN02908 threonyl-tRNA synthet 99.4 4.6E-12 1E-16 155.5 21.1 144 641-803 120-278 (686)
20 PF07973 tRNA_SAD: Threonyl an 99.4 8.7E-13 1.9E-17 105.4 6.2 44 735-794 1-44 (44)
21 smart00863 tRNA_SAD Threonyl a 99.1 1E-10 2.2E-15 93.3 4.8 44 735-794 1-44 (44)
22 COG0441 ThrS Threonyl-tRNA syn 99.1 9.2E-10 2E-14 131.2 14.1 137 641-798 27-171 (589)
23 PF02272 DHHA1: DHHA1 domain; 97.8 2.8E-05 6E-10 67.5 5.7 65 892-965 3-68 (68)
24 cd00768 class_II_aaRS-like_cor 96.0 0.02 4.3E-07 59.6 8.2 181 61-299 3-211 (211)
25 PRK09348 glyQ glycyl-tRNA synt 95.1 0.18 3.9E-06 54.6 11.0 177 56-312 2-180 (283)
26 PRK14799 thrS threonyl-tRNA sy 94.2 0.2 4.4E-06 60.8 10.1 44 758-801 74-122 (545)
27 TIGR00388 glyQ glycyl-tRNA syn 94.1 0.43 9.3E-06 52.0 11.0 175 58-312 1-177 (293)
28 KOG1637 Threonyl-tRNA syntheta 93.8 0.028 6E-07 65.1 1.7 36 642-679 68-103 (560)
29 cd00733 GlyRS_alpha_core Class 90.5 2.2 4.8E-05 46.4 10.8 173 60-312 2-176 (279)
30 COG0752 GlyQ Glycyl-tRNA synth 89.2 2.8 6E-05 45.5 10.1 61 56-132 3-64 (298)
31 PRK14908 glycyl-tRNA synthetas 88.6 3.6 7.8E-05 53.1 12.4 177 56-312 3-181 (1000)
32 cd00669 Asp_Lys_Asn_RS_core As 88.3 0.97 2.1E-05 50.2 6.5 102 61-176 5-116 (269)
33 TIGR00458 aspS_arch aspartyl-t 85.8 4.5 9.8E-05 48.0 10.6 99 62-176 138-247 (428)
34 TIGR00462 genX lysyl-tRNA synt 84.3 3.7 8.1E-05 46.4 8.6 114 61-190 5-135 (304)
35 PRK03932 asnC asparaginyl-tRNA 84.0 9.5 0.0002 45.6 12.2 105 61-175 137-254 (450)
36 cd00776 AsxRS_core Asx tRNA sy 83.4 6.1 0.00013 45.1 9.9 101 60-176 27-138 (322)
37 PF02091 tRNA-synt_2e: Glycyl- 81.4 0.77 1.7E-05 50.1 1.6 172 61-312 2-175 (284)
38 cd00670 Gly_His_Pro_Ser_Thr_tR 80.8 7.6 0.00017 41.4 9.1 106 61-182 6-149 (235)
39 PRK00488 pheS phenylalanyl-tRN 80.2 2 4.4E-05 49.2 4.5 41 258-308 274-324 (339)
40 TIGR00644 recJ single-stranded 79.1 22 0.00048 43.5 13.2 97 863-969 325-421 (539)
41 PF01411 tRNA-synt_2c: tRNA sy 77.1 0.51 1.1E-05 57.6 -1.5 82 213-320 116-200 (552)
42 PTZ00450 macrophage migration 73.2 3.4 7.5E-05 40.0 3.4 25 167-191 77-101 (113)
43 KOG1501 Arginine N-methyltrans 69.1 3.6 7.8E-05 48.1 2.8 79 289-369 72-157 (636)
44 PRK06462 asparagine synthetase 68.8 20 0.00042 41.3 8.8 29 288-316 299-327 (335)
45 KOG1759 Macrophage migration i 66.4 5.5 0.00012 38.6 3.1 24 169-192 78-101 (115)
46 PF01422 zf-NF-X1: NF-X1 type 60.6 3.7 8E-05 27.8 0.5 9 233-241 12-20 (20)
47 PTZ00397 macrophage migration 59.2 8.8 0.00019 37.0 3.1 29 164-192 74-102 (116)
48 PF01187 MIF: Macrophage migra 48.6 12 0.00027 35.9 2.3 25 168-192 76-100 (114)
49 COG0016 PheS Phenylalanyl-tRNA 48.0 18 0.00039 41.5 3.7 182 48-308 100-321 (335)
50 PTZ00326 phenylalanyl-tRNA syn 45.5 38 0.00081 41.0 6.0 122 120-308 358-483 (494)
51 PF01409 tRNA-synt_2d: tRNA sy 42.3 13 0.00027 41.0 1.4 26 60-85 19-44 (247)
52 smart00438 ZnF_NFX Repressor o 41.3 11 0.00025 27.2 0.5 11 233-243 12-22 (26)
53 PTZ00401 aspartyl-tRNA synthet 40.8 33 0.00072 42.1 4.7 98 62-175 218-327 (550)
54 PLN02853 Probable phenylalanyl 39.0 36 0.00079 41.0 4.6 26 59-84 222-247 (492)
55 COG2024 Phenylalanyl-tRNA synt 37.9 46 0.001 38.6 4.9 59 237-308 279-344 (536)
56 PRK11070 ssDNA exonuclease Rec 34.0 5.4E+02 0.012 32.1 13.6 95 864-969 355-453 (575)
57 cd00777 AspRS_core Asp tRNA sy 32.8 23 0.0005 39.7 1.6 104 61-176 5-116 (280)
58 PLN02850 aspartate-tRNA ligase 32.8 50 0.0011 40.5 4.5 100 62-174 230-338 (530)
59 TIGR00470 sepS O-phosphoseryl- 31.7 45 0.00098 40.0 3.7 19 289-307 317-335 (533)
60 PF11867 DUF3387: Domain of un 30.5 2.2E+02 0.0048 32.7 9.1 198 284-498 33-256 (335)
61 KOG2783 Phenylalanyl-tRNA synt 29.5 28 0.00062 40.4 1.6 41 28-76 50-90 (436)
62 PF00152 tRNA-synt_2: tRNA syn 25.8 37 0.00081 38.7 1.7 105 61-175 26-140 (335)
63 PLN02850 aspartate-tRNA ligase 24.3 37 0.0008 41.6 1.4 29 288-316 494-522 (530)
64 TIGR00457 asnS asparaginyl-tRN 24.1 39 0.00085 40.5 1.5 29 288-316 417-445 (453)
65 PTZ00425 asparagine-tRNA ligas 23.1 41 0.00089 41.6 1.5 29 288-316 550-578 (586)
66 cd00775 LysRS_core Lys_tRNA sy 23.1 41 0.0009 38.5 1.4 23 293-315 302-324 (329)
67 PTZ00401 aspartyl-tRNA synthet 22.8 42 0.00092 41.2 1.5 29 288-316 514-542 (550)
68 PLN02532 asparagine-tRNA synth 22.2 44 0.00095 41.7 1.5 29 288-316 597-625 (633)
69 PLN02603 asparaginyl-tRNA synt 22.2 45 0.00097 41.2 1.5 30 287-316 528-557 (565)
70 TIGR00443 hisZ_biosyn_reg ATP 21.9 1.9E+02 0.0041 32.8 6.4 112 60-182 11-143 (314)
71 cd00773 HisRS-like_core Class 21.8 1.4E+02 0.0029 32.8 5.1 116 60-183 5-139 (261)
72 TIGR00499 lysS_bact lysyl-tRNA 21.8 46 0.00099 40.4 1.5 100 61-175 176-293 (496)
73 COG1190 LysU Lysyl-tRNA synthe 21.4 35 0.00075 41.1 0.3 197 2-212 121-353 (502)
74 PLN02221 asparaginyl-tRNA synt 21.2 47 0.001 41.0 1.4 46 119-174 326-372 (572)
75 COG0017 AsnS Aspartyl/asparagi 21.1 57 0.0012 38.8 2.1 90 61-161 138-234 (435)
76 KOG1159 NADP-dependent flavopr 20.5 54 0.0012 39.4 1.6 86 44-161 227-313 (574)
77 PLN02502 lysyl-tRNA synthetase 20.4 51 0.0011 40.6 1.5 86 62-162 234-332 (553)
78 PRK12445 lysyl-tRNA synthetase 20.2 52 0.0011 40.1 1.5 91 62-162 189-287 (505)
79 PRK05159 aspC aspartyl-tRNA sy 20.1 53 0.0011 39.2 1.5 29 288-316 401-429 (437)
80 TIGR00418 thrS threonyl-tRNA s 20.0 1.5E+02 0.0032 36.5 5.4 116 61-188 204-350 (563)
No 1
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=1.3e-248 Score=2244.93 Aligned_cols=899 Identities=68% Similarity=1.068 Sum_probs=816.7
Q ss_pred ccCCCCCCcCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCccccccccccccc
Q 002074 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (972)
Q Consensus 48 ~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~Qk 127 (972)
||-.|...++|+++|||++||+||++|||++||||||||+||||||||||||+||||||+|..+|++++++|+|+|||||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 78888888999999999999999999999999999999999999999999999999999999999777778999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 002074 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (972)
Q Consensus 128 CiR~gGkhnDl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~ 207 (972)
|||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+.+ |+|+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 99999999
Q ss_pred HHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCC
Q 002074 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (972)
Q Consensus 208 iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~ 287 (972)
||+++||++||+++|.+||||+||+||||||||||||||++++++.++++.||+|||||||||||||||+.||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998877766677789999999999999999999999999999
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhheeeeecCCCcc
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 367 (972)
||||||||||||+|||||++||||||+|.|||+.|++++|+++|+|.....+.+..++||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998888875533232456789999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002074 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (972)
Q Consensus 368 sn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~ 447 (972)
||+|||||||||||||+|+++.+||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999644899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHH
Q 002074 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (972)
Q Consensus 448 ~i~~~~---~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~ 524 (972)
++++.+ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.........+...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998764 36799999999999999999999999999999999999999999999999876532221111223233344
Q ss_pred HhhcCCCCcccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCe-eEEEEeE
Q 002074 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRNV 603 (972)
Q Consensus 525 l~~~~~~~T~d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~-~~~V~dv 603 (972)
+....++++++|.||++..+++|+|++++.+++.++++..++.++|+||+|+|||||||||+|+|+|..+++ .+.|.+|
T Consensus 479 ~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv 558 (936)
T PLN02900 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDV 558 (936)
T ss_pred HHhccCCCCCcccccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEEE
Confidence 433223444469999944338999999998888899998888899999999999999999999999987666 7999999
Q ss_pred EEECCEEEEEEEeecCCccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCC
Q 002074 604 QIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 683 (972)
Q Consensus 604 ~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 683 (972)
++.+|.++|++.+.. +++.+|++|.+.|||+||+++|++|||||||++||+++||.++.|.|++++++++||||+++.
T Consensus 559 ~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 636 (936)
T PLN02900 559 QKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGK 636 (936)
T ss_pred EEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCC
Confidence 999999999987654 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccchhhcCCcCCCCeEEEEECCcccccccCCCCccccce-eee
Q 002074 684 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SAE 762 (972)
Q Consensus 684 ~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~-d~e 762 (972)
++|++++.+||+.||++|++|+||++.+++++||+++.|++++|+++|++.||||+|+ ++ |.+
T Consensus 637 ~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~e 700 (936)
T PLN02900 637 PMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSME 700 (936)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Ccccee
Confidence 9999999999999999999999999999999999997899999999999999999998 56 999
Q ss_pred eccCcccccccccccEEEEeEeeecCCeEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcc---------------------
Q 002074 763 LCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKI--------------------- 821 (972)
Q Consensus 763 lCgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~ll~~--------------------- 821 (972)
+||||||.||||||.|+|++++++++|++||+|+||.+|+++++....++++++.++++
T Consensus 701 lCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 780 (936)
T PLN02900 701 LCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAVI 780 (936)
T ss_pred CCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999998
Q ss_pred ---cCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceEEEEecccCCHHHHHHHHHHHHhcc-CC
Q 002074 822 ---EGSLLEK------NQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GM 891 (972)
Q Consensus 822 ---~~~~l~~------~~~k~~~ke~~~l~~~~a~~~~~~l~~~~~~~g~~~vv~~~~~~~d~~~L~~~a~~l~~~~-~~ 891 (972)
++.++.. +++++++|++++++.+++...++.+.+++...+..+++..++.+.+++.|+++++.++++. +.
T Consensus 781 ~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~la~~l~~~~~~~ 860 (936)
T PLN02900 781 PAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDP 860 (936)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEecCCCCHHHHHHHHHHHHhhcCCc
Confidence 4444433 6788888888888888888888887766554444677777754579999999999998853 43
Q ss_pred cEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCccCCCCCCCeeeecCCcCCHHHHHHHHHHHHH
Q 002074 892 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAA 968 (972)
Q Consensus 892 ~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkGGgGk~~~AQG~g~~~~~l~~al~~~~~~l~ 968 (972)
.+++++...+++++.+++++++++ ..++++|++|+|++++.+||||| |+|.||||+|++++++++|++.++++++
T Consensus 861 ~vvl~~~~~~~~k~~~~~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G~~~~AQggg~~~~~l~~al~~~~~~~~ 935 (936)
T PLN02900 861 AAVVLSSDEEKGKVSLVAAVPPGV-VKKGLKAGKWLGAIAKLCGGGGG-GKPGFAQGQGRDAEKLDAALEKARAFAV 935 (936)
T ss_pred eEEEEEecCCCCeEEEEEEEChHH-hhcCCCHHHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHHHHHHHHHHHHHHh
Confidence 566665432457888888888776 55679999999999999999999 9999999999999999999999999875
No 2
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-246 Score=2167.59 Aligned_cols=860 Identities=44% Similarity=0.748 Sum_probs=782.2
Q ss_pred cCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCC
Q 002074 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKH 135 (972)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkh 135 (972)
.+||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|..+|++ .|+||||||||+
T Consensus 4 ~~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~-----~r~~~sQkcIR~---- 74 (879)
T COG0013 4 MKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPA-----NRAVTSQKCIRT---- 74 (879)
T ss_pred ccCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCC-----CCeecccccccc----
Confidence 45999999999999999999999999999999999999999999999999999866653 399999999999
Q ss_pred CCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--C
Q 002074 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (972)
Q Consensus 136 nDl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~--~ 213 (972)
|||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||+ .|+||+++|+++ +
T Consensus 75 NDieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~--------~Ddea~~~W~~~~gi 146 (879)
T COG0013 75 NDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYE--------DDDEAYNEWEKIIGI 146 (879)
T ss_pred CchhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEec--------CchHHHHHHHhhcCC
Confidence 899999999999999999999999999999999999999999999999999999997 499999999998 9
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCC--CCCCCCCCCCCeEEEeeeeccccccC-CCCccccCCCCcc
Q 002074 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRE-SDGSLKPLPAKHV 290 (972)
Q Consensus 214 ~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~--~~~~~~~~~~r~lEiwNlVFmq~~~~-~~g~l~~Lp~k~I 290 (972)
|++||+|+|.+||||+||+ ||||||||||||||+..+ ....+++|++|||||||||||||||+ .+|+|.|||+|||
T Consensus 147 p~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~I 225 (879)
T COG0013 147 PPERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNI 225 (879)
T ss_pred CHHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCc
Confidence 9999999999999999999 999999999999986443 33567899999999999999999999 7999999999999
Q ss_pred ccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhheeeeecCCCccCCC
Q 002074 291 DTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNE 370 (972)
Q Consensus 291 DTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~f~i~DGv~Psn~ 370 (972)
|||||||||+|||||+|||||||+|.|||+.+++++|. .|.. +.+.++++|||||||+||++|||+|||+|||+
T Consensus 226 DTGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~-~~~~-----~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNe 299 (879)
T COG0013 226 DTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGK-KYGE-----DEEDPDVSFRVIADHIRSLAFMIADGVLPSNE 299 (879)
T ss_pred ccCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCC-cCCc-----cccccceeEEEehhHHHHHHHHHhCCCCcCCC
Confidence 99999999999999999999999999999999999987 4531 22334789999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002074 371 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQ 450 (972)
Q Consensus 371 grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~ 450 (972)
|||||||||||||+||+ +.||++.|||++|||.+++.|++.||||+++++.|+++|+.||++|.+||++|+++|+++++
T Consensus 300 grGYvlRriiRRa~R~~-~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~ 378 (879)
T COG0013 300 GRGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELA 378 (879)
T ss_pred CccHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 57999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcC-CCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcC
Q 002074 451 DVQG-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRG 529 (972)
Q Consensus 451 ~~~~-~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (972)
++++ +.|||++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+.+ .+.. .........+.. .
T Consensus 379 ~~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~---~~~~~~~~~~~~-~ 453 (879)
T COG0013 379 KLKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGE---GAKESEDLELID-K 453 (879)
T ss_pred hhccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-cccc---ccchhhhhhhhc-c
Confidence 8764 78999999999999999999999999999999999999999999999999754 1111 001111111111 2
Q ss_pred CCCcccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeC-CeeEEEEeEEEEC-
Q 002074 530 VLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGL-FGSFYVRNVQIYG- 607 (972)
Q Consensus 530 ~~~T~d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~-~~~~~V~dv~~~~- 607 (972)
.++| +|.||+ ..+.+++|+.++.++..++++.+++.++||||+||||||||||++|+|+|..+ +..+.|.|||+.+
T Consensus 454 ~~~t-ef~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~ 531 (879)
T COG0013 454 LPET-EFLGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGN 531 (879)
T ss_pred CCCc-eeeecc-cccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCC
Confidence 3556 599999 78888999999988766888889999999999999999999999999999887 4789999999997
Q ss_pred CEEEEEEEeecCCccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCH
Q 002074 608 GFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDP 687 (972)
Q Consensus 608 g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ 687 (972)
+.++|.+.+.. +.+++|+.|.++|||+||..+|+||||||||++|||++||.|++|+||+++++++||||+|++++|+
T Consensus 532 ~~~vH~~~~~~--G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~ 609 (879)
T COG0013 532 GVIVHKGKVES--GELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTA 609 (879)
T ss_pred ceEEEEEeecc--CccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCH
Confidence 89999998776 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccchhhcCCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCc
Q 002074 688 EHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGT 767 (972)
Q Consensus 688 eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGT 767 (972)
|||++||++||++|++|.||.+.+|++++|++. |++++|||+|++.||||+|| ++|+|+||||
T Consensus 610 Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig----------------~~SvElCGGT 672 (879)
T COG0013 610 EELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIG----------------DFSVELCGGT 672 (879)
T ss_pred HHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEEC----------------CceeeccCCc
Confidence 999999999999999999999999999999998 99999999999999999999 5899999999
Q ss_pred ccccccccccEEEEeEeeecCCeEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcccCChhhH-----HHHHHHHHHHHHHH
Q 002074 768 HLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEK-----NQVRKAQKKVAEEN 842 (972)
Q Consensus 768 HV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~ll~~~~~~l~~-----~~~k~~~ke~~~l~ 842 (972)
||.|||+||.|||++++++++|+|||+|+||..|+++++..+.++++++.+++++.+.+++ +++++++|++++++
T Consensus 673 Hv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~~~~~~~kv~~l~~~~k~lekel~~lk 752 (879)
T COG0013 673 HVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLK 752 (879)
T ss_pred ccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999995444433 78889999999988
Q ss_pred HHHHHHHHHHHHHHh---hcCCcceEEEEecccCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccc
Q 002074 843 LQKAVKVATETAEAA---ASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSK 919 (972)
Q Consensus 843 ~~~a~~~~~~l~~~~---~~~g~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~ 919 (972)
.+++......+.... +..|.++++..+. +.+++.|+.+++.++++.+..++++.+.. ++|+.+++++++++ ..
T Consensus 753 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~-~~d~~~Lr~~a~~lk~k~~~~vivl~~~~-~~Kv~~~~~v~~~~-~~- 828 (879)
T COG0013 753 KKLAAAELADLLSNAKAEEIGGVKVLAKEVD-GADMKELREIADDLKKKLGSAVIVLASVA-DGKVSLVVAVSKDL-TD- 828 (879)
T ss_pred HHHHHHHHHhhhhcccceeeCCEEEEEEEec-CCCHHHHHHHHHHHHhhcCCcEEEEEEec-CCeEEEEEEechhh-hc-
Confidence 877766655544332 2467888888886 68999999999999994445555554433 34899999998765 43
Q ss_pred cccHHHHHHHHhhhcCCccCCCCCCCeeeecCCcCCHHHHHHHHHHHHHhhh
Q 002074 920 QLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 971 (972)
Q Consensus 920 ~~~a~~l~k~v~~~lgGkGGgGk~~~AQG~g~~~~~l~~al~~~~~~l~~~L 971 (972)
+++|++|+++++..+||||| |+|+||||+|+++.++++|++.+.++++++|
T Consensus 829 ~~~a~~lvk~la~~~gG~GG-Gr~d~Aqggg~d~~~~~~al~~~~~~i~~~l 879 (879)
T COG0013 829 KVKAGELVKELAAIVGGKGG-GRPDMAQGGGKDPEKLDEALELVIEWVKEKL 879 (879)
T ss_pred ccCHHHHHHHHHHhcCCCCC-CchhhheeCCCCcccHHHHHHHHHHHHHhhC
Confidence 49999999999999999999 9999999999999999999999999998765
No 3
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-247 Score=2079.64 Aligned_cols=864 Identities=56% Similarity=0.919 Sum_probs=778.3
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 002074 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (972)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (972)
||++|||++||+||+++.|++|+||||||.+||||||+|||||||||+|||. +++++||+|+|||||+||||||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHND 75 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHND 75 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCC
Confidence 7999999999999999999999999999999999999999999999999998 3468999999999999999999
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh-CCCC
Q 002074 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPAS 216 (972)
Q Consensus 138 l~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~-~~~~ 216 (972)
||+||+|.|||||||||||||||||||+|||.|||||||++||||++|||||||+||+++|||+|.||++||+++ +|++
T Consensus 76 LdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~s 155 (895)
T KOG0188|consen 76 LDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDS 155 (895)
T ss_pred hhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCchH
Q 002074 217 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF 296 (972)
Q Consensus 217 ~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGmGL 296 (972)
||++|+.+||||+||+||||||||||||||+|+++++.+||.|+|+++||||||||||||++||+|.|||+|||||||||
T Consensus 156 rILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGf 235 (895)
T KOG0188|consen 156 RILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGF 235 (895)
T ss_pred hccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhheeeeecCCCccCCCCcchHH
Q 002074 297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376 (972)
Q Consensus 297 ERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~f~i~DGv~Psn~grgYvl 376 (972)
|||++|||+|.||||||+|+|||++|++.++++ |+| ++.+.+|+||||+|||+||++++||||.+|+|+||||||
T Consensus 236 ERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvL 310 (895)
T KOG0188|consen 236 ERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVL 310 (895)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHH
Confidence 999999999999999999999999999999997 998 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 002074 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GK 455 (972)
Q Consensus 377 RrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~~-~~ 455 (972)
|||||||+||++++||++++||.+|||+|+++||++||||+.+++.|.++|+.||+.|++||++|.++|++.++.++ ++
T Consensus 311 RRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~ 390 (895)
T KOG0188|consen 311 RRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSK 390 (895)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887 57
Q ss_pred CCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCccc
Q 002074 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (972)
Q Consensus 456 ~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d 535 (972)
.|||+++|.||||||||+|||++||+|+|++||+++|+.+.++.+++|+.+.+.+.+ +.+++ +.+| +|||+|
T Consensus 391 tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdD 462 (895)
T KOG0188|consen 391 TIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDD 462 (895)
T ss_pred cCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCC
Confidence 999999999999999999999999999999999999999999999999876443322 33332 3333 799999
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCe---eEEEEeEEEECCEEEE
Q 002074 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIH 612 (972)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~---~~~V~dv~~~~g~i~H 612 (972)
++||.-...++++|++++.++.+++++..+++++||||+|+||+|+|||.+|+|.|...+. .+.|..++- ||+|+|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh 541 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVH 541 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEE
Confidence 9999535689999999999999999999999999999999999999999999999976443 455555565 899999
Q ss_pred EEEeecCCccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHH
Q 002074 613 IGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRR 692 (972)
Q Consensus 613 ~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~ 692 (972)
.+.. + +.+++|++|.+.+|.+||+.+|++|||||||++|||+++ ..+.|+||+|.||++||||++..++|.+|+++
T Consensus 542 ~g~l-~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~ 617 (895)
T KOG0188|consen 542 IGVL-E--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKK 617 (895)
T ss_pred Eeee-c--cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHH
Confidence 9986 3 789999999999999999999999999999999999999 56789999999999999999988899999999
Q ss_pred HHHHHHHHHHcCCCEEEEEeCHHHHHhhccchhhcCCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccc
Q 002074 693 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNT 772 (972)
Q Consensus 693 IE~~vNe~I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nT 772 (972)
+|+.+|++|.++.+|...++++++|++++|+|++|+|.||++||||++|. +..+++|+|||||+.||
T Consensus 618 vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~-------------~~~~svE~CgGTH~~~t 684 (895)
T KOG0188|consen 618 VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGA-------------GQLTSVEFCGGTHLTNT 684 (895)
T ss_pred HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEecc-------------ccccceeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999983 23579999999999999
Q ss_pred cccccEEEEeEeeecCCeEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcccC------------Chhh---H----HHHHH
Q 002074 773 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEG------------SLLE---K----NQVRK 833 (972)
Q Consensus 773 geIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~ll~~~~------------~~l~---~----~~~k~ 833 (972)
|+||.|.|++++++++|+|||.+|||+.|.++++.++.+.+.++..-.+.. ..++ + +.++.
T Consensus 685 ~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~~~~~~~~~~~~~~kei~~l~~~~~~a~iP~~~k~~~~~~~k~ 764 (895)
T KOG0188|consen 685 SHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAEDLDKDLRKTDKALEKEIQELGENLDHAVIPYWQKDEIRELLKK 764 (895)
T ss_pred cccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhhccccchHHhHHHHHHHHHH
Confidence 999999999999999999999999999999998877742222221110001 1111 1 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hhh-cCCcceEEEEecccCCHHHHHHHHHHHHh-ccCCcEEEEEeeCCCCeEEE
Q 002074 834 AQKKVAEENLQKAVKVATETAE----AAA-SNGKPFCISRVEVGLDAAAVREAVLKVIE-QKGMPVMVFSTDETTNKAVV 907 (972)
Q Consensus 834 ~~ke~~~l~~~~a~~~~~~l~~----~~~-~~g~~~vv~~~~~~~d~~~L~~~a~~l~~-~~~~~vvll~~~~~~~k~~~ 907 (972)
++|.++.+...+.....++.++ ..+ ..+.+++|+.++.. ..+++ .|+.++++++ +++.+|+.|
T Consensus 765 ~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~~~~~~~~v~~~~~~----------~~~k~~~~~~~i~lls-d~~~gkv~~ 833 (895)
T KOG0188|consen 765 LQKRMDDLSRALKAAVQKEVLEEAKQLKESNPNQPLLVHYIESS----------KLLKKQAPDKSIMLLS-DDESGKVTC 833 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEecch----------HHHHhcCCCCeeEEec-cCCCCeEEE
Confidence 4444443332222222122211 111 35678888888632 33444 4888999998 666789999
Q ss_pred EEecCCcccccccccHHHHHHHHhhhcCCccCCCCCCCeeeecCCcCCHHHHHHHHHHHHHhhh
Q 002074 908 CAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 971 (972)
Q Consensus 908 ~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkGGgGk~~~AQG~g~~~~~l~~al~~~~~~l~~~L 971 (972)
.|.|++.+ ..++++|.+|++.++..+||||| ||+..+||.|.++.+|++|++.|.+++..+|
T Consensus 834 ~c~V~~~a-~~~gl~a~~w~q~v~~~~ggk~g-gK~~~~q~~g~~~~~l~~av~~a~~~a~~~L 895 (895)
T KOG0188|consen 834 LCQVPQNA-ANKGLKASEWVQSVSGTMGGKGG-GKGVLAQATGNNVGCLDEAVSLATEFALLKL 895 (895)
T ss_pred EEeecHHH-hhccCCHHHHHHHHHHhhCCccC-CccchhhhhCCcHHHHHHHHHHHHHHhhccC
Confidence 99999998 88899999999999999999999 9999999999999999999999999987665
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=2.8e-234 Score=2114.97 Aligned_cols=838 Identities=42% Similarity=0.714 Sum_probs=760.6
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCCCCCC
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDV 141 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnDl~~V 141 (972)
|||++||+||++|||++||||||||+|||||||||||||||||||+|.++|+ ++|+||||||||+ ||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~V 71 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENV 71 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhh
Confidence 6999999999999999999999999999999999999999999999999886 5899999999999 899999
Q ss_pred CCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh-CCCCCccc
Q 002074 142 GKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLP 220 (972)
Q Consensus 142 G~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~-~~~~~I~~ 220 (972)
|+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||+++ +|++||++
T Consensus 72 G~t~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~~--------D~ea~~iW~~~g~~~~~i~~ 143 (851)
T TIGR00344 72 GRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYED--------DEEAYEIWEKHGIPAERIIR 143 (851)
T ss_pred cCCCcchhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcCC--------CHHHHHHHHhcCCCHHHccc
Confidence 9999999999999999999999999999999999999999999999999974 89999999999 99999999
Q ss_pred CCCCCCcccCCCCCCCcCceeEEeecCCC---CCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCchHH
Q 002074 221 FGCKDNFWEMGDTGPCGPCSEIHYDRTGN---RDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (972)
Q Consensus 221 ~~~~dNfW~mG~~GpCGPcsEi~yd~~~~---~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGmGLE 297 (972)
+|.+||||+||+ ||||||||||||+++. +.+..++|.||+|||||||||||||||++||+|+|||+||||||||||
T Consensus 144 ~~~~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLE 222 (851)
T TIGR00344 144 CGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLE 222 (851)
T ss_pred CCccCCcCCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHH
Confidence 999999999999 9999999999998643 345567788999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccc--cccchhhhhhhhhhheeeeecCCCccCCCCcchH
Q 002074 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDAD--KVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (972)
Q Consensus 298 Rl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~--~~~~a~rviaDH~R~~~f~i~DGv~Psn~grgYv 375 (972)
||+|||||++||||||+|.|||++|++++|+++|.+..+..+.+ ..++||||||||+||++|||+||++|||+|||||
T Consensus 223 Rl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYv 302 (851)
T TIGR00344 223 RFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYV 302 (851)
T ss_pred HHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchh
Confidence 99999999999999999999999999999986444433222222 2346999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002074 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGK 455 (972)
Q Consensus 376 lRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~~~~ 455 (972)
||||||||+|+++ +||++.|||++|||.|++.|++.||||.++++.|++||..||++|.+||++|+++|++++++++++
T Consensus 303 lRrilRRa~r~~~-~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~ 381 (851)
T TIGR00344 303 LRRLIRRALRHGK-KLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKK 381 (851)
T ss_pred HHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999995 799999999999999999999999999999999999999999999999999999999999876566
Q ss_pred CCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCccc
Q 002074 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (972)
Q Consensus 456 ~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d 535 (972)
.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++... +..+ +..+.. ..++| +
T Consensus 382 ~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~---~~~~---~~~~~~-~~~~t-~ 453 (851)
T TIGR00344 382 ELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTIS---FELQ---EIALAN-VYPAT-E 453 (851)
T ss_pred ccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhccc---cccc---HHHHhc-ccCCc-c
Confidence 89999999999999999999999999999999999999999999999998654321 1112 222222 12445 5
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEEE
Q 002074 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGS 615 (972)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 615 (972)
|.+|+ ..+++|+|++++.+++.++++..++.++|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|++.
T Consensus 454 ~l~Y~-~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 532 (851)
T TIGR00344 454 FLGYE-DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGE 532 (851)
T ss_pred cccee-cccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEE
Confidence 99999 58899999999988888888888888999999999999999999999999877678999999999999999987
Q ss_pred eecCCccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHH
Q 002074 616 LTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 695 (972)
Q Consensus 616 ~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~ 695 (972)
+.. +++++|++|.+.|||+||+++|++|||||||++||+++||.+++|.|++++++++||||++++++|++++++||+
T Consensus 533 ~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~ 610 (851)
T TIGR00344 533 VEG--GSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED 610 (851)
T ss_pred ecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHH
Confidence 644 678999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHcCCCEEEEEeCHHHHHhhccchhhcCCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCccccccccc
Q 002074 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA 775 (972)
Q Consensus 696 ~vNe~I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeI 775 (972)
.||++|++|+||.+++++++||++. +.+++|+++|++.||||+|+ ++|.++||||||.|||||
T Consensus 611 ~vNelI~~n~pV~~~~~~~eeA~~~-~~~~~~~e~y~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeI 673 (851)
T TIGR00344 611 LVNEQILANIPIKVIFMDLDEAKAK-GAFALFGEKYGEKVRVVSVG----------------DVSVELCGGTHVRNTGEI 673 (851)
T ss_pred HHHHHHHhCCceEEEEeCHHHHHhc-chhhhcCCCCCCeEEEEEEC----------------CeeccCCCCCccCChhhC
Confidence 9999999999999999999999997 56677889999999999998 589999999999999999
Q ss_pred ccEEEEeEeeecCCeEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcccCChhhH------HHHHHHHHHHHHHHHHHHHHH
Q 002074 776 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEK------NQVRKAQKKVAEENLQKAVKV 849 (972)
Q Consensus 776 g~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~ll~~~~~~l~~------~~~k~~~ke~~~l~~~~a~~~ 849 (972)
|.|+|++++++++|++||+|+||.+|+++++..++.++++++.+++++.+++. +++++++|++++++++++...
T Consensus 674 g~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~l~~~L~~~~~~i~~~v~~l~~e~k~l~k~~~~l~~~l~~~~ 753 (851)
T TIGR00344 674 GLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLKIADQK 753 (851)
T ss_pred eEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998766654 678888888888888888777
Q ss_pred HHHHHHHhh-cCCcceEEEEecccCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHH
Q 002074 850 ATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLT 928 (972)
Q Consensus 850 ~~~l~~~~~-~~g~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k 928 (972)
++.+.+.++ ..+.++++..++ +.+++.|+++++.++++.+..++++++. .++++.+++++++++ .+++++|++|+|
T Consensus 754 ~~~l~~~~~~~~~~~~i~~~~~-~~d~~~lr~la~~l~~~~~~~vvll~~~-~~~k~~~v~~~~~~~-~~~~~~A~~lvk 830 (851)
T TIGR00344 754 IDELKDKAETINGVKVLVEVVD-AKDMKSLKTMADRLKSKLGSAIYVLASF-ANGKVKLVCGVSNDV-LNKGIKAGELIN 830 (851)
T ss_pred HHHHhhhhhccCCeEEEEEEcc-CCCHHHHHHHHHHHHhhcCCeEEEEEEc-CCCeEEEEEEEChhH-hhcCCCHHHHHH
Confidence 777765544 356677777775 5699999999999988644566666653 457888888888876 566799999999
Q ss_pred HHhhhcCCccCCCCCCCeeeec
Q 002074 929 AALQPLKGRCGKGKGGLASGQG 950 (972)
Q Consensus 929 ~v~~~lgGkGGgGk~~~AQG~g 950 (972)
++++.+||||| |+|.||||+|
T Consensus 831 ~~~~~~gGkGG-G~~~~AQggg 851 (851)
T TIGR00344 831 QIAQVLGGKGG-GRPDLAQAGG 851 (851)
T ss_pred HHHHHcCCCCC-CcHHhcccCC
Confidence 99999999999 9999999985
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-231 Score=2100.12 Aligned_cols=852 Identities=46% Similarity=0.776 Sum_probs=778.1
Q ss_pred CCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCC
Q 002074 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (972)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhn 136 (972)
.||++|||++||+||++|||++||||||||+|||||||||||||||||||+|..+|+ ++|+||||||||+ |
T Consensus 1 ~~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----n 71 (865)
T PRK00252 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPP-----YPRATTSQKCIRT----N 71 (865)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----c
Confidence 489999999999999999999999999999999999999999999999999999886 5899999999999 9
Q ss_pred CCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CC
Q 002074 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (972)
Q Consensus 137 Dl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~--~~ 214 (972)
||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||.+ |+||++||++. +|
T Consensus 72 Dld~VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~~--------D~e~~~iW~~~~g~~ 143 (865)
T PRK00252 72 DLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYED--------DDEAYDIWKKEIGVP 143 (865)
T ss_pred chhhccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcCC--------CHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999974 89999999976 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCC--CCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCcccc
Q 002074 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (972)
Q Consensus 215 ~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~--~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDT 292 (972)
++||++++.+||||+||+||||||||||||||++.. ++..+++.|+||||||||||||||||+++|+|.|||+|||||
T Consensus 144 ~~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDT 223 (865)
T PRK00252 144 PERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDT 223 (865)
T ss_pred HHHeecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeec
Confidence 999999999999999999999999999999997532 334577889999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhheeeeecCCCccCCCCc
Q 002074 293 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGR 372 (972)
Q Consensus 293 GmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~f~i~DGv~Psn~gr 372 (972)
|||||||+|||||++||||||+|.|||+.|++++|+ +|. .++||||||||+||++|||+||++|||+||
T Consensus 224 G~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~-~y~----------~~~a~rviaDH~R~~~f~i~DG~~Psn~gr 292 (865)
T PRK00252 224 GMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGV-KYE----------DDVSFRVIADHIRAVAFLIADGVLPSNEGR 292 (865)
T ss_pred CcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCC-CCC----------CCceEEEEcchHHHHHHHHccCcccCCCCc
Confidence 999999999999999999999999999999999997 463 257999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002074 373 EYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV 452 (972)
Q Consensus 373 gYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~ 452 (972)
|||||||||||+|++ +.||++.|||++|||.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++.
T Consensus 293 gYvlRrilRRa~r~~-~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~ 371 (865)
T PRK00252 293 GYVLRRILRRAVRHG-RLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKL 371 (865)
T ss_pred chHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 6799999999999999999999999999999999999999999999999999999999999875
Q ss_pred c-CCCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCC
Q 002074 453 Q-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVL 531 (972)
Q Consensus 453 ~-~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (972)
+ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||+.++.... ...+..+.. ..
T Consensus 372 ~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~-~~- 443 (865)
T PRK00252 372 KAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGD------YNALEELLD-DL- 443 (865)
T ss_pred cCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccc------hhHHHHHhh-cC-
Confidence 4 25799999999999999999999999999999999999999999999999875432210 112223322 22
Q ss_pred CcccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEE-CCEE
Q 002074 532 ATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFV 610 (972)
Q Consensus 532 ~T~d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i 610 (972)
+| +|.||+ ..+++|+|++|+.++++++++.+++.++|+||+|+|||||||||+|+|+|.. +..++|.+|++. +|.+
T Consensus 444 ~t-~f~~Y~-~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i 520 (865)
T PRK00252 444 AT-EFVGYD-TLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLI 520 (865)
T ss_pred CC-eeeeee-eccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEE
Confidence 45 488999 6789999999998888898888888899999999999999999999999977 678999999998 9999
Q ss_pred EEEEEeecCCccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHH
Q 002074 611 IHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHL 690 (972)
Q Consensus 611 ~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel 690 (972)
+|.+.... +++++|++|.+.|||+||+++|++|||+|||++||+++||.+++|.|++++++++||||++++++|++++
T Consensus 521 ~H~~~~~~--~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel 598 (865)
T PRK00252 521 VHRGKVEE--GELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEEL 598 (865)
T ss_pred EEEEEecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHH
Confidence 99997544 6789999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccchhhcCCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccc
Q 002074 691 RRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLS 770 (972)
Q Consensus 691 ~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~ 770 (972)
.+||+.||++|++|+||++.+++++||++. |++++|+++|++.||||+|+ ++|.++||||||.
T Consensus 599 ~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~-~~~~~~~~~y~~~VRVV~Ig----------------~~d~~~CgGTHV~ 661 (865)
T PRK00252 599 RKIEDLVNEKIRENLPVETEEMSIEEAKKM-GAMALFGEKYGDEVRVVSIG----------------DFSIELCGGTHVS 661 (865)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCHHHHHhC-CchhhccccCCCeEEEEEEC----------------CceeeCCCCCccC
Confidence 999999999999999999999999999995 78888888999999999998 5899999999999
Q ss_pred cccccccEEEEeEeeecCCeEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcccCChhhH------HHHHHHHHHHHHHHHH
Q 002074 771 NTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEK------NQVRKAQKKVAEENLQ 844 (972)
Q Consensus 771 nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~ll~~~~~~l~~------~~~k~~~ke~~~l~~~ 844 (972)
||||||.|+|++++++++|++||+|+||.+|+++++..++++++++++++++..++.. +++++++|++++++.+
T Consensus 662 nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l~~~~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~ 741 (865)
T PRK00252 662 NTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLKELAALLKAKPSELPERVEALLEELKELEKELEQLKAK 741 (865)
T ss_pred CcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998766654 6788888888888888
Q ss_pred HHHHHHHHHHHHhh-cCCcceEEEEecccCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccccccH
Q 002074 845 KAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEV 923 (972)
Q Consensus 845 ~a~~~~~~l~~~~~-~~g~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a 923 (972)
++...++++.+++. ..+.++++..++ +.+++.|+.+++.+++..+..+++++. ..++++.+++++++++ ..++++|
T Consensus 742 l~~~~~~~l~~~~~~i~~~~~vv~~~~-~~d~~~L~~la~~l~~~~~~~vvll~~-~~~~k~~~vv~v~~~~-~~~gl~A 818 (865)
T PRK00252 742 LAAAAAGDLLAQAKEVNGVKVLAAQVE-GVDAKALRTLADDLKDKLGSGVVVLAT-VEDGKVSLVVAVTKDL-TDKGLKA 818 (865)
T ss_pred HHHHHhhhhhhhhhccCCeEEEEEEec-CCCHHHHHHHHHHHHhhcCCeEEEEEE-ccCCeEEEEEEEChhH-hhcCcCH
Confidence 88888877766544 345566676764 679999999999998753335555553 3356787888888776 5567999
Q ss_pred HHHHHHHhhhcCCccCCCCCCCeeeecCCcCCHHHHHHHHHHHHHhhh
Q 002074 924 SEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 971 (972)
Q Consensus 924 ~~l~k~v~~~lgGkGGgGk~~~AQG~g~~~~~l~~al~~~~~~l~~~L 971 (972)
++|++++++.+||||| |++.+|||+++++++++++++.+.++++.+|
T Consensus 819 ~~l~k~l~~~lgGkGG-Gk~~~AQGgg~~~~~l~~al~~a~~~l~~~~ 865 (865)
T PRK00252 819 GDLVKELAKIVGGKGG-GRPDMAQAGGKDPAKLDEALAAVKEWLAAKL 865 (865)
T ss_pred HHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999 9999999999999999999999999997654
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=5.3e-209 Score=1895.86 Aligned_cols=794 Identities=28% Similarity=0.450 Sum_probs=710.8
Q ss_pred CCCCCcCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccc-cccCCCCccccccccccccccc
Q 002074 51 ADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCI 129 (972)
Q Consensus 51 ~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~fl-G~~~p~~~~~~~~r~~~~QkCi 129 (972)
..+..++|+++|||++||+||+++||++||||||||+||++||||||||+||||||+ |..+|+ ++|+|+|||||
T Consensus 49 ~~~~~~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~r~~~sQkCi 123 (902)
T TIGR03683 49 NPIFSKKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPP-----ANPLVISQPCI 123 (902)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCC-----CCCceeccccc
Confidence 334557799999999999999999999999999999999999999999999999998 999886 47999999999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHH
Q 002074 130 RAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNE 204 (972)
Q Consensus 130 R~gGkhnDl~~VG~t~rHhTfFEMlGnfSfg-----dYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E 204 (972)
|+ |||||||+|+||||||||||||||| ||||+|||+|||||| ++||||++|| |+
T Consensus 124 R~----nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~~lgi~~~~i--~~-------------- 182 (902)
T TIGR03683 124 RL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-EELGIDPEEI--TY-------------- 182 (902)
T ss_pred cc----cccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-HHcCCCHHHe--ee--------------
Confidence 99 8999999999999999999999999 999999999999999 9999999998 32
Q ss_pred HHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCC------
Q 002074 205 ARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES------ 278 (972)
Q Consensus 205 ~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~------ 278 (972)
+||||+|| ||||||||||| + | |||||||||||+|++
T Consensus 183 -------------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmq~~~~~~~~~~~ 224 (902)
T TIGR03683 183 -------------------KESPWEGG--GNAGPCFEVIV-G--G--------------LELATLVFMQYEEDKEGEIEI 224 (902)
T ss_pred -------------------cCCccCCC--CCCCCceeeee-C--c--------------Eeeeeeeeeeecccccccccc
Confidence 69999999 99999999999 2 2 999999999999998
Q ss_pred -CCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCccccc---
Q 002074 279 -DGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKV--- 343 (972)
Q Consensus 279 -~g~l~~Lp~k~IDTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~-----------~y~~~~~~~~~~~~--- 343 (972)
||+|+|||+||||||||||||+|||||+|||||| +|.|||+.|++++|++ +|.|.++.++.+.+
T Consensus 225 ~~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~ 303 (902)
T TIGR03683 225 KGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLREL 303 (902)
T ss_pred CCCeeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhccccCccccchhhHH
Confidence 8999999999999999999999999999999999 9999999999999974 46666665443311
Q ss_pred ----------------c-----chhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHH
Q 002074 344 ----------------D-----MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLV 402 (972)
Q Consensus 344 ----------------~-----~a~rviaDH~R~~~f~i~DGv~Psn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv 402 (972)
+ .++|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.| |++||
T Consensus 304 ~~~~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv 381 (902)
T TIGR03683 304 RKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLM-RELGLDIP-LSDLV 381 (902)
T ss_pred hhhhhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHH
Confidence 1 4779999999999999999999999999999999999999999 57999999 99999
Q ss_pred HHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHH
Q 002074 403 NIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEE 482 (972)
Q Consensus 403 ~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e 482 (972)
+.+++.|++.||||.++++.|++||+.||++|.+||++|.++|++++++ ++.|||++||+||||||||+|||++||+|
T Consensus 382 ~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~--~~~i~g~~~f~LyDTyGfP~dl~~eia~e 459 (902)
T TIGR03683 382 EMQLEELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLKT--KKEIPLDDLIELYDSHGIPPEIVKEIAAE 459 (902)
T ss_pred HHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 46799999999999999999999999999
Q ss_pred cCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCeee
Q 002074 483 RGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFI 559 (972)
Q Consensus 483 ~g~~vD~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~a~Vl~i~~~~~~~ 559 (972)
+|++||++ +|+++|++||++||++.+. ..... ..+ .++|+|+ +.+|+ |..+++|+|++++.
T Consensus 460 ~g~~vd~~~~F~~~~~~~~~~~~~~~~~------~~~~~--~~~--~~~~~T~-~l~y~~~~~~e~~a~Vl~i~~----- 523 (902)
T TIGR03683 460 LGAEVEIPDNFYSIVAERHEKEEKEEEL------PKDYE--ERA--KDLPETR-RLFYEDPTMREFEAKVLGVFD----- 523 (902)
T ss_pred cCCcccCCccHHHHHHHHHHHHHhcccc------ccchh--HHH--hcCCCce-EeccccCccceEEEEEEEEEc-----
Confidence 99999998 9999999999998764211 01111 111 2467785 77777 44789999999972
Q ss_pred eeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEEEeecCCccCCCCCEEEEEEchhhhh
Q 002074 560 ESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRK 639 (972)
Q Consensus 560 ~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~ 639 (972)
.+|+||+|+|||||||||+|+|+|..+++.++|.+|++.+|.++|.+. . +.+++|++|.++|||+||+
T Consensus 524 --------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~l~~G~~V~~~VD~~rR~ 591 (902)
T TIGR03683 524 --------NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVD--G--EGIKEGDEVKGEIDWERRL 591 (902)
T ss_pred --------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHH
Confidence 269999999999999999999999887778999999999999999985 2 3478999999999999999
Q ss_pred hHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHh
Q 002074 640 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 719 (972)
Q Consensus 640 ~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~ 719 (972)
++|+||||||||++||+++||.|++|+||+++++++||||+|.+++|++++++||++||++|++|+||++.+++++||++
T Consensus 592 ~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~ 671 (902)
T TIGR03683 592 RLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQ 671 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHh
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hccchhhc-CCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeeecCCeEEEEEEeC
Q 002074 720 INGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTT 798 (972)
Q Consensus 720 ~~glr~~f-~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG 798 (972)
..+++.++ +++|++.||||+|+ ++|+++||||||.||||||.|+|++++++++|++||+|+||
T Consensus 672 ~~~~~l~~~~~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G 735 (902)
T TIGR03683 672 KYGFRLYQGGVPPGREIRVVEIE----------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAG 735 (902)
T ss_pred cCchhhhccCCCCCCeEEEEEEC----------------CeeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEC
Confidence 87765554 45678899999998 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcceEEEEecc
Q 002074 799 GLAYKAFEAACSLEKEVDDASKIEGSLLEK------NQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEV 871 (972)
Q Consensus 799 ~~A~~~~~~~~~~~~~l~~ll~~~~~~l~~------~~~k~~~ke~~~l~~~~a~~~~~~l~~~~~-~~g~~~vv~~~~~ 871 (972)
.+|+++++..+++++++++++++++.+++. +++++++|++++++++++...++.+...+. .++.++++..+
T Consensus 736 ~~A~~~~~~~~~~l~~~a~~L~~~~~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~~~~l~~~~~~i~g~~vi~~~~-- 813 (902)
T TIGR03683 736 EAALEYIQELEDLLRESSDILKVPPEQLPETVKRFFEEWKEQRKEIERLKKKLAELKIYELISEAERIGGVEVIVELV-- 813 (902)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCEEEEEEEe--
Confidence 999999999999999999999998776654 678888888888888888777777765544 34556666655
Q ss_pred cCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCccCCCCCCCeeeecC
Q 002074 872 GLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGT 951 (972)
Q Consensus 872 ~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkGGgGk~~~AQG~g~ 951 (972)
+.+++.|+.+++.+++. + .++++++. .++++.+++++++++ +++|++|++++++.+||||| |+|.+|||+|+
T Consensus 814 ~~d~~~lr~la~~l~~~-~-~vvvl~~~-~~~k~~~v~~~~~~~----~~~A~~lvk~l~~~lgGkGG-Gk~~~AQGgg~ 885 (902)
T TIGR03683 814 DADMDELQEIAEKLAEK-G-LVVVLVSG-GGGNGRVVISSGEKA----GVDAGELVREIAKELGGGGG-GKPDLAQGGGP 885 (902)
T ss_pred CCCHHHHHHHHHHHhcC-C-cEEEEEEc-cCCcEEEEEEEChhH----hhhHHHHHHHHHHhcCCCcC-CchhheeecCC
Confidence 46899999999999764 3 44444443 245666666665543 68999999999999999999 99999999999
Q ss_pred CcCCHHHHHHHHHHHH
Q 002074 952 DAAQVTPAMDLAAEFA 967 (972)
Q Consensus 952 ~~~~l~~al~~~~~~l 967 (972)
+++++++|++.+.++|
T Consensus 886 ~~~~l~~al~~~~~~l 901 (902)
T TIGR03683 886 DDLKIDEALEKIKSFL 901 (902)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998876
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.4e-208 Score=1884.95 Aligned_cols=797 Identities=27% Similarity=0.463 Sum_probs=713.6
Q ss_pred CCCCCCcCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccc-cccCCCCcccccccccccccc
Q 002074 50 GADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKC 128 (972)
Q Consensus 50 ~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~fl-G~~~p~~~~~~~~r~~~~QkC 128 (972)
|..+..++||++|||++||+||++|||++||||||||+||++||||||||+||||||+ |..+|+ ++|+|+||||
T Consensus 51 ~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~~~~~sQ~C 125 (900)
T PRK13902 51 GNPIFSKKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPP-----ANPLVISQPC 125 (900)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCC-----CCCceecccc
Confidence 4445667799999999999999999999999999999999999999999999999998 999875 5799999999
Q ss_pred cccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcH
Q 002074 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDN 203 (972)
Q Consensus 129 iR~gGkhnDl~~VG~t~rHhTfFEMlGnfSfg-----dYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~ 203 (972)
||+ |||||||+|+||||||||||||||| ||||+|||+|||||||++|||||+|| |+
T Consensus 126 iR~----nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~~~I--~~------------- 186 (900)
T PRK13902 126 IRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDPEEI--TF------------- 186 (900)
T ss_pred cch----hhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCHHHe--ee-------------
Confidence 999 8999999999999999999999999 99999999999999999999999998 22
Q ss_pred HHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccc
Q 002074 204 EARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK 283 (972)
Q Consensus 204 E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~ 283 (972)
+||||+|| ||||||||||| + | |||||||||||+++ +|+|+
T Consensus 187 --------------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmqy~~~-~g~~~ 226 (900)
T PRK13902 187 --------------------KESWWEGG--GNAGPCFEVLV-R--G--------------LELATLVFMQYKKD-GNRYV 226 (900)
T ss_pred --------------------cccccCCC--CCCCCceeeee-C--C--------------EEeeeeeeeEEEcC-CCeee
Confidence 69999999 99999999999 2 2 99999999999998 89999
Q ss_pred cCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCccccc---------
Q 002074 284 PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKV--------- 343 (972)
Q Consensus 284 ~Lp~k~IDTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~-----------~y~~~~~~~~~~~~--------- 343 (972)
|||+||||||||||||+||+||+|||||| +|.|||+.|++++|++ +|.|.++.++.+.+
T Consensus 227 ~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 305 (900)
T PRK13902 227 EMPLKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAK 305 (900)
T ss_pred eCCCCeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCCcccchhHHHHHHHHHh
Confidence 99999999999999999999999999999 9999999999999974 25566654331211
Q ss_pred ---------------cchhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHH
Q 002074 344 ---------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKV 408 (972)
Q Consensus 344 ---------------~~a~rviaDH~R~~~f~i~DGv~Psn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~ 408 (972)
..++|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.| |++||+.+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~ 383 (900)
T PRK13902 306 KLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLL-DELGLDVP-LSELVDMQIDE 383 (900)
T ss_pred hcccchhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHH
Confidence 15789999999999999999999999999999999999999999 47999999 99999999999
Q ss_pred hcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHHcCceeC
Q 002074 409 MGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVD 488 (972)
Q Consensus 409 m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD 488 (972)
|++.||||.++++.|++||+.||++|.+||++|.++|++++++. +.|||++||+||||||||+|||++||+++|++||
T Consensus 384 ~~~~ypel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~--~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd 461 (900)
T PRK13902 384 LKEDYPELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKK--EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVE 461 (900)
T ss_pred HhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999864 6799999999999999999999999999999999
Q ss_pred h-hhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCeeeeeecCC
Q 002074 489 I-EGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPG 565 (972)
Q Consensus 489 ~-~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~a~Vl~i~~~~~~~~~~~~~ 565 (972)
+ ++|+++|++|+++|+++.++ . ... . ..+ .++|+|+ +.+|+ |..+++|+|++++.
T Consensus 462 ~p~~F~~~~~~~~~~~~~~~~~--~----~~~-~-~~~--~~~~~T~-~l~y~~~~~~~~~a~Vl~i~~----------- 519 (900)
T PRK13902 462 VPDNFYSLVAERHEKAEEEEEE--P----VVE-E-ERL--KDLPETE-KLFYEDPYMREFEAKVLGVID----------- 519 (900)
T ss_pred chhhHHHHHHHHHHHHhhcccc--c----cch-h-hHh--hcCCCce-EeccccCccceEEEEEEEEEc-----------
Confidence 9 89999999999998863111 0 000 0 111 2567785 77887 44789999999973
Q ss_pred CeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEEEeecCCccCCCCCEEEEEEchhhhhhHhhhh
Q 002074 566 NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNH 645 (972)
Q Consensus 566 ~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~H 645 (972)
.+|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|.+. . +.+.+|++|.++|||+||+++|+||
T Consensus 520 --~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~~~~G~~V~~~VD~~rR~~~mr~H 593 (900)
T PRK13902 520 --NYVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLE--G--EPPKKGDEVRGEIDWERRYRLMRHH 593 (900)
T ss_pred --CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHHHH
Confidence 279999999999999999999999877778999999999999999985 2 3455699999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccchh
Q 002074 646 TCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRA 725 (972)
Q Consensus 646 TAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~glr~ 725 (972)
||||||++||+++||.|++|+|++++++++||||+|++++|++++.+||++||++|++|+||++.+++++||++..+++.
T Consensus 594 TAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l 673 (900)
T PRK13902 594 TATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRL 673 (900)
T ss_pred HHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhh
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999877765
Q ss_pred hc-CCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeeecCCeEEEEEEeCHHHHHH
Q 002074 726 VF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKA 804 (972)
Q Consensus 726 ~f-~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~ 804 (972)
++ +++|++.||||+|+ ++|.++||||||.||||||.|+|++++++++|++||+|+||.+|+++
T Consensus 674 ~~~g~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~ 737 (900)
T PRK13902 674 YQGGVPPGKTIRVVEIG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEY 737 (900)
T ss_pred hccCCCCCCeEEEEEEC----------------CeeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHH
Confidence 54 46788999999998 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcceEEEEecccCCHHH
Q 002074 805 FEAACSLEKEVDDASKIEGSLLEK------NQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAA 877 (972)
Q Consensus 805 ~~~~~~~~~~l~~ll~~~~~~l~~------~~~k~~~ke~~~l~~~~a~~~~~~l~~~~~-~~g~~~vv~~~~~~~d~~~ 877 (972)
++..+++++++++++++++.+++. +++++++|++++++.+++...++.+..++. .++.++++..+ +.+++.
T Consensus 738 ~~~~~~~l~~~a~~L~~~~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~~~~l~~~~~~~~g~~~i~~~~--~~d~~~ 815 (900)
T PRK13902 738 IQELEDLLKEAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELLSKAEEVGGVKVVVEEV--DADEDE 815 (900)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEeCCEEEEEEEe--CCCHHH
Confidence 999999999999999998777654 778888999999988888888877766554 35666766666 568999
Q ss_pred HHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCccCCCCCCCeeeecCCcCCHH
Q 002074 878 VREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVT 957 (972)
Q Consensus 878 L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkGGgGk~~~AQG~g~~~~~l~ 957 (972)
|+.+++.+++..+ .+++++ . +++..+++++++++ .++|++|++++++.+||||| |+|.||||+|+++++++
T Consensus 816 Lr~~a~~l~~~~~-~vvl~~-~--~~k~~~v~~~~~~~----~~~a~~lvk~l~~~~gGkGG-Gk~~~AQGgg~~~~~l~ 886 (900)
T PRK13902 816 LRKIANELAKEGK-VALVVL-G--NGGGQIVVGVGEDV----GVNAGEIVRELAKVLGGKGG-GKPDLAQGGGPDPKKKE 886 (900)
T ss_pred HHHHHHHHHhcCC-eEEEEE-c--CCcEEEEEEEChhh----hhhHHHHHHHHHHhcCCCCC-CchHheeeCCCCHHHHH
Confidence 9999999988543 344444 2 34556666666554 38999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 002074 958 PAMDLAAEFAAMK 970 (972)
Q Consensus 958 ~al~~~~~~l~~~ 970 (972)
+|++.+.+++.+.
T Consensus 887 ~al~~~~~~l~~~ 899 (900)
T PRK13902 887 EALEAAKEVLKEA 899 (900)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999764
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.8e-193 Score=1673.95 Aligned_cols=583 Identities=41% Similarity=0.731 Sum_probs=544.4
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 002074 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (972)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (972)
||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++|+ ++|+||||||||+ ||
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~D 71 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GD 71 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cc
Confidence 78999999999999999999999999999999999999999999999999999876 5799999999999 79
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccc--cCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh-CC
Q 002074 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV--YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LP 214 (972)
Q Consensus 138 l~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~--lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~-~~ 214 (972)
||||| |+|||||||||||||||||||+|||+|||||||++ |||||+|||||||+||+. +|+|+||++||+++ +|
T Consensus 72 le~VG-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~--~~~D~Ea~~iW~~~g~~ 148 (594)
T PRK01584 72 IDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEE--IPRDEETASVWESLGIP 148 (594)
T ss_pred ccccC-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCC--CCCCHHHHHHHHHcCCC
Confidence 99999 89999999999999999999999999999999998 999999999999999885 89999999999999 99
Q ss_pred CCCcccCCCCCCcc-cCCCCCCCcCceeEEeecCCCCCCC--CCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccc
Q 002074 215 ASRVLPFGCKDNFW-EMGDTGPCGPCSEIHYDRTGNRDAA--SLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVD 291 (972)
Q Consensus 215 ~~~I~~~~~~dNfW-~mG~~GpCGPcsEi~yd~~~~~~~~--~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~ID 291 (972)
++||++++.+|||| +||++||||||||||||+|+. .+. +.++++|+|||||||+|||||||++||+|+|||+||||
T Consensus 149 ~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~ID 227 (594)
T PRK01584 149 KDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVD 227 (594)
T ss_pred HHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCcee
Confidence 99999999999999 799999999999999999754 221 23456889999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhheeeeecC--CCccCC
Q 002074 292 TGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD--GSCPGN 369 (972)
Q Consensus 292 TGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~f~i~D--Gv~Psn 369 (972)
||||||||+|||||++||||||+|.|||+.|++++|+ +|.. . +..+.||||||||+||++|||+| |++|||
T Consensus 228 TGmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~-~y~~----~--~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN 300 (594)
T PRK01584 228 TGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGK-IYGQ----N--EEDDRSIRIIADHIRAACFILGDPFVVLPSN 300 (594)
T ss_pred CCcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCC-CcCC----C--CCCceeEEEEecHHHHHHHHhhcccCCCCCC
Confidence 9999999999999999999999999999999999997 5731 1 23468999999999999999999 999999
Q ss_pred CCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002074 370 EGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAA 449 (972)
Q Consensus 370 ~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i 449 (972)
+|||||||||||||+|+| +.||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+
T Consensus 301 ~grGYvlRrilRRa~r~~-~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i 379 (594)
T PRK01584 301 VGQGYVLRRLIRRSIRHA-KKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLI 379 (594)
T ss_pred CCCchHHHHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-CCCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhc
Q 002074 450 QDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKR 528 (972)
Q Consensus 450 ~~~~-~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~ 528 (972)
++++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++ +
T Consensus 380 ~~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~-~-------------------- 438 (594)
T PRK01584 380 PNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKG-A-------------------- 438 (594)
T ss_pred HHhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhc-c--------------------
Confidence 8764 56899999999999999999999999999999999999999999998887641 0
Q ss_pred CCCCcccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECC
Q 002074 529 GVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGG 608 (972)
Q Consensus 529 ~~~~T~d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g 608 (972)
. . +|. ||++|+|+
T Consensus 439 ~---~-~f~---------------------------------------------g~~~d~g~------------------ 451 (594)
T PRK01584 439 D---K-VFK---------------------------------------------GGLADHSY------------------ 451 (594)
T ss_pred c---c-ccc---------------------------------------------CCcCcccc------------------
Confidence 0 0 010 35666654
Q ss_pred EEEEEEEeecCCccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHH
Q 002074 609 FVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPE 688 (972)
Q Consensus 609 ~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~e 688 (972)
.+|++|||+|||++||+++||.++.|+||+++++++||||++++++|++
T Consensus 452 -------------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~e 500 (594)
T PRK01584 452 -------------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDD 500 (594)
T ss_pred -------------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHH
Confidence 3799999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccchhhcCCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcc
Q 002074 689 HLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTH 768 (972)
Q Consensus 689 el~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTH 768 (972)
++.+||+.||++|++|+||.+.+++++||++. +.+++|+++|++.||||+|| ++|.++|||||
T Consensus 501 dL~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~-~~~~lf~e~y~~~VRVV~Ig----------------d~d~elCGGTH 563 (594)
T PRK01584 501 EIKKVEDIVNLQIKNDLSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEID----------------GFSKEVCGGPH 563 (594)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCHHHHHhc-chhhhccccCCCcEEEEEEC----------------CeeeeCCCCCC
Confidence 99999999999999999999999999999996 67788888999999999998 58999999999
Q ss_pred cccccccccEEEEeEeeecCCeEEEEEEe
Q 002074 769 LSNTREAEAFALLSEEGIAKGIRRITAVT 797 (972)
Q Consensus 769 V~nTgeIg~fkI~~~~~~~~Gv~RI~~vt 797 (972)
|.|||+||.|+|++++++++|+|||+|++
T Consensus 564 V~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 564 VENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred CCCcccCceEEEEecccccCCeEEEEEEe
Confidence 99999999999999999999999999986
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=2.5e-175 Score=1538.39 Aligned_cols=545 Identities=54% Similarity=0.928 Sum_probs=454.1
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccccc-CCCCcccccccccccccccccCCCCCCCCC
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTA-DPNTQLSKLTRACNTQKCIRAGGKHNDLDD 140 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~-~p~~~~~~~~r~~~~QkCiR~gGkhnDl~~ 140 (972)
|||++||+||++|||++||||||||+||||||||||||+||||||+|.. +|+ ++|+|+||||||+|||||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~-----~~r~~~~Q~CiR~~GkhnDld~ 75 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPP-----ANRLVSSQKCIRTGGKHNDLDN 75 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--S-----SSCEEEEEEEE-EETTEECGGG
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCC-----CCcccccceeeccCCCcchhhh
Confidence 7999999999999999999999999999999999999999999999998 554 6799999999999999999999
Q ss_pred CCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CCCCCc
Q 002074 141 VGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRV 218 (972)
Q Consensus 141 VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~--~~~~~I 218 (972)
||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||.+ |+||++||+++ +|++||
T Consensus 76 VG~t~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~--------d~ea~~~w~~~~g~~~~~i 147 (552)
T PF01411_consen 76 VGRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEW--------DGEAGEIWEKIVGGPEERI 147 (552)
T ss_dssp TTTSSS--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECC--------ECCCCCCCCECCTTECCCE
T ss_pred cCCCceEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCC--------chhHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999987 66999999999 899999
Q ss_pred ccCCCCCCcccCCCCCCCcCceeEEeecCCCCC---CCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCch
Q 002074 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD---AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (972)
Q Consensus 219 ~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~---~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGmG 295 (972)
++||.+||||+||++||||||||||||+|..+. ..+.++++++||+||||+|||||+|++||+++|||+++||||||
T Consensus 148 ~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmg 227 (552)
T PF01411_consen 148 LVFGKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMG 227 (552)
T ss_dssp EEE-CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEE
T ss_pred EecCCCCceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCC
Confidence 999999999999999999999999999976543 24567788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhheeeeecCCCccCCCCcchH
Q 002074 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (972)
Q Consensus 296 LERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~f~i~DGv~Psn~grgYv 375 (972)
|||++++|||++|||+||+|.|+++.++++++. +|. +....++|+|+||||+||++|||+||++|||+|||||
T Consensus 228 ler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~------~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYv 300 (552)
T PF01411_consen 228 LERLAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYK------DEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYV 300 (552)
T ss_dssp HHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TT------SSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHH
T ss_pred cHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Ccc------cccccccEEEEEcchhhceeeEecCCeeecccCCcch
Confidence 999999999999999999999999999999997 672 2345678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 002074 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-G 454 (972)
Q Consensus 376 lRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~~-~ 454 (972)
||||||||+|++ +.||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ +
T Consensus 301 lRriiRRa~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~ 379 (552)
T PF01411_consen 301 LRRIIRRAVRFG-RKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKK 379 (552)
T ss_dssp HHHHHHHHHHHH-HHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999 67999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred CCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcc
Q 002074 455 KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATD 534 (972)
Q Consensus 455 ~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~ 534 (972)
+.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.... +..+.. .+ ..++.++
T Consensus 380 ~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~--~~~~~~---~~--~~l~~~t 452 (552)
T PF01411_consen 380 KELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSS--IEEDVS---AL--AELPKTT 452 (552)
T ss_dssp SEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH----------SSS---TT--TTCHHHE
T ss_pred cCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccc--hhhhHH---HH--hhhhccc
Confidence 7899999999999999999999999999999999999999999999999876543220 011111 11 2345556
Q ss_pred cccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEE
Q 002074 535 DSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG 614 (972)
Q Consensus 535 d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~ 614 (972)
+|+||+ .++++|+|++|+.+++++.++..++..+||||+|+|||||||||+|+|+|..++..+.|.+|++.+|.++|.+
T Consensus 453 eF~gYe-~~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~ 531 (552)
T PF01411_consen 453 EFVGYE-YLECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIG 531 (552)
T ss_dssp ETCCCC-------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEE
T ss_pred ccceee-cccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEE
Confidence 799999 6688999999999888888888888889999999999999999999999998888999999999999999999
Q ss_pred EeecCCccCCCCCEEEEEEchhh
Q 002074 615 SLTEGAGRFSVGEEVICKVDYDR 637 (972)
Q Consensus 615 ~~~~~~~~l~~G~~V~~~VD~~r 637 (972)
.... +.+++|+.|.++|||+|
T Consensus 532 ~~~~--g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 532 EVES--GSLKVGDEVTAEVDWER 552 (552)
T ss_dssp SSG---GG--TTSEEEEEE-HHH
T ss_pred eccC--CCCCCCCEEEEEecCCC
Confidence 8655 78999999999999997
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=2.7e-108 Score=853.34 Aligned_cols=230 Identities=63% Similarity=1.115 Sum_probs=221.8
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCCCC
Q 002074 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLD 139 (972)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnDl~ 139 (972)
++|||++||+||++|||+++|||||||++|||||||||||+||||||+|.++|+ ++|+|++|||||+ ||||
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~-----~~r~~~~QkCiR~----~Die 71 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPP-----ANRLVNSQKCIRA----GDID 71 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCC-----CCceeeeeeceec----CChh
Confidence 479999999999999999999999999999999999999999999999999876 6899999999999 7999
Q ss_pred CCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CCCCC
Q 002074 140 DVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 217 (972)
Q Consensus 140 ~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~--~~~~~ 217 (972)
|||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||.+. +|++|
T Consensus 72 nVG~t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~--------dde~~~~w~~~~g~~~~~ 143 (232)
T cd00673 72 NVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEG--------DDEEEAIWWWKIGLPGIR 143 (232)
T ss_pred hccccccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCC--------CHHHHHHHHHhhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999975 89999999988 99999
Q ss_pred cccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCchHH
Q 002074 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (972)
Q Consensus 218 I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGmGLE 297 (972)
|++++.+||||+||++||||||||||||+++++++...+++|++|||||||||||||+|+++|+|.|||+||||||||||
T Consensus 144 i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlE 223 (232)
T cd00673 144 IERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLE 223 (232)
T ss_pred eeeCCccCCCCCCCCCcCCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHH
Confidence 99999999999999999999999999999877666667888999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 002074 298 RLTSILQNK 306 (972)
Q Consensus 298 Rl~~vlq~~ 306 (972)
||+|||||+
T Consensus 224 Rla~vlQg~ 232 (232)
T cd00673 224 RLVWVLQGV 232 (232)
T ss_pred HHHHHHcCC
Confidence 999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=7e-47 Score=400.45 Aligned_cols=226 Identities=29% Similarity=0.430 Sum_probs=206.7
Q ss_pred cceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEEEeecCC
Q 002074 541 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGA 620 (972)
Q Consensus 541 y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~ 620 (972)
|..+++|+|+.+..+ .|+||+|+|||+|||||+|+|+|.+.++...|.++.+.+..|+|++...
T Consensus 11 y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~--- 74 (241)
T COG2872 11 YLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEH--- 74 (241)
T ss_pred ccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCc---
Confidence 678999999998642 6999999999999999999999999999999999999999999998632
Q ss_pred ccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHH
Q 002074 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (972)
Q Consensus 621 ~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~ 700 (972)
..+.+|++|.++|||+||+++||+|||+|||++++.+.++ .+..|.++++++.|+||+... +++.+.++++++|++
T Consensus 75 ~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne~ 150 (241)
T COG2872 75 AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANEL 150 (241)
T ss_pred ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--chhhHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999998 456899999999999999643 899999999999999
Q ss_pred HHcCCCEEEEEeCHHHHHhhccchhhcCCcCC---CCeEEEEECCcccccccCCCCccccceeeeeccCccccccccccc
Q 002074 701 IKAELDVFSKEATLAEAKCINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (972)
Q Consensus 701 I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~---~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~ 777 (972)
|.+|+||...+++.+||.+.|+++++-.+.++ ..+|+|+|+ ++|++|||||||+||+|||.
T Consensus 151 v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~----------------did~qpCgGtHVk~T~EIG~ 214 (241)
T COG2872 151 VKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIG----------------DIDVQPCGGTHVKNTGEIGE 214 (241)
T ss_pred HHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEEC----------------CeeccCCCCcccCCccceEE
Confidence 99999999999999999999999887663333 479999998 58999999999999999999
Q ss_pred EEEEeEeeecCCeEEEEEEeCHHHH
Q 002074 778 FALLSEEGIAKGIRRITAVTTGLAY 802 (972)
Q Consensus 778 fkI~~~~~~~~Gv~RI~~vtG~~A~ 802 (972)
|+|++.++++++.+||+|.+|.+|.
T Consensus 215 Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 215 IKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred EEEEEEEEecCceEEEEEEeccccc
Confidence 9999999999999999999999875
No 12
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=4.7e-46 Score=395.51 Aligned_cols=209 Identities=27% Similarity=0.390 Sum_probs=177.4
Q ss_pred eEEEEeccccccccCCCccCceEEEEeCC--eeEEEEeEEEECCEEEEEEEeec----CCccCCCCCEEEEEEchhhhhh
Q 002074 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLF--GSFYVRNVQIYGGFVIHIGSLTE----GAGRFSVGEEVICKVDYDRRKL 640 (972)
Q Consensus 567 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~--~~~~V~dv~~~~g~i~H~~~~~~----~~~~l~~G~~V~~~VD~~rR~~ 640 (972)
.+.|+||+|+|||||||||+|+|+|...+ ..+.|.+|++.+|.++|++.+.. +.++|.+|++|.++|||+||+.
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~ 81 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL 81 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence 46799999999999999999999997532 36999999999999999986531 0146889999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHH-hCCceecccccccCCceEEEeeCCCCCCHHH----HHHHHHHHHHHHHcCCCEEEEEeCHH
Q 002074 641 IAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHGKPVDPEH----LRRIESIVNEQIKAELDVFSKEATLA 715 (972)
Q Consensus 641 ~m~~HTAtHLLsaAL~~v-lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee----l~~IE~~vNe~I~~n~pV~~~~~~~e 715 (972)
+|++|||+|||++||+++ +|.++.++|+++ ++..++||. ..++.++ +.+||+++|++|++++||++.+++++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ 158 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYD 158 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHH
Confidence 999999999999999998 787777888875 567888876 4577655 47999999999999999999999999
Q ss_pred HHHhhccchhhcCCc-CCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeeecCCeEEEE
Q 002074 716 EAKCINGLRAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (972)
Q Consensus 716 eA~~~~glr~~f~e~-y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~ 794 (972)
||+++++ ++.+... .++.||||+|+ +++.++||||||.||+|||.|+|++.+ +++|.+||+
T Consensus 159 ea~~~~~-~~~~~~~~~~~~vRiV~I~----------------~~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~ 220 (223)
T PLN02961 159 EAAELCG-GSLPDYIAKDSTPRIVKIG----------------DSPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVS 220 (223)
T ss_pred HHHHhcC-CcCCCcCCCCCceEEEEEC----------------CCccCccCCcccCchhccccEEEEEEE-ecCCEEEEE
Confidence 9998754 2332211 14689999998 578999999999999999999999986 458999999
Q ss_pred EE
Q 002074 795 AV 796 (972)
Q Consensus 795 ~v 796 (972)
|-
T Consensus 221 ~~ 222 (223)
T PLN02961 221 YT 222 (223)
T ss_pred Ee
Confidence 84
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=364.15 Aligned_cols=360 Identities=21% Similarity=0.266 Sum_probs=272.6
Q ss_pred CeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEEEeecCCccCCCCCEEEEEEchhhhhhHhhhh
Q 002074 566 NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNH 645 (972)
Q Consensus 566 ~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~H 645 (972)
+.+.+.|..|++||||||||+|.|++. .+.|..|.+.|...-|.+. .++.+|.+|.+.|||+||.++||+|
T Consensus 42 eg~~i~lqdtiLfpegggqp~d~gf~~----~v~V~~VsR~G~~A~H~~~-----~~iePGt~V~V~VD~qkR~D~MQQH 112 (415)
T KOG2105|consen 42 EGYEIELQDTILFPEGGGQPSDSGFLK----IVEVSHVSRFGLHAKHHVN-----DYIEPGTTVEVAVDEQKRMDYMQQH 112 (415)
T ss_pred ecceeeeeeeEeccCCCCCCCcccccc----ceeEEEeeccccchhhccC-----CCCCCCCeEEEEecHHHHhHHHHHh
Confidence 467899999999999999999999994 4678889888877777754 6799999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHH--HHHhhccc
Q 002074 646 TCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLA--EAKCINGL 723 (972)
Q Consensus 646 TAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~e--eA~~~~gl 723 (972)
|+||||+|++.+.|...+ .++.++.-+..+..+. .++|.||+..||+.+|+.|+.-+||.+.+.+++ +..+..|
T Consensus 113 sGQHLitAvad~~fKlkT--tSWelG~~~sa~e~~~-~~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~eVeqVS~- 188 (415)
T KOG2105|consen 113 SGQHLITAVADHLFKLKT--TSWELGRFRSAIELDT-PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSG- 188 (415)
T ss_pred cchhHHHHHHHhhhccce--eeeeccceeeccccCC-CCccHHHHHHHHHHHHHHHHhccchheeecccCCcchhhccC-
Confidence 999999999999886543 2333332222334343 479999999999999999999999999988764 3444433
Q ss_pred hhhcCCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeeecCCeEEEEEEeCHHHHH
Q 002074 724 RAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYK 803 (972)
Q Consensus 724 r~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~ 803 (972)
|-++ +.-.+++|+|.|+ ++|.++||||||+||++|+.|+|++.++-.+|-.-+.|+.|.|++.
T Consensus 189 ~~~~-D~haG~iRvvnI~----------------~vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~ 251 (415)
T KOG2105|consen 189 RGLP-DDHAGPIRVVNIE----------------GVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLK 251 (415)
T ss_pred CCCc-ccccCceEEEeec----------------CccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHH
Confidence 2221 1223589999998 6899999999999999999999999998888877888999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceEEEEecccCCHHH
Q 002074 804 AFEAACSLEKEVDDASKIEGSLLEK------NQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAA 877 (972)
Q Consensus 804 ~~~~~~~~~~~l~~ll~~~~~~l~~------~~~k~~~ke~~~l~~~~a~~~~~~l~~~~~~~g~~~vv~~~~~~~d~~~ 877 (972)
|++..+.++..+..+|+|...+..+ ++.+.++|....+...+|...+.++.......| +++.+.. ..+.+.
T Consensus 252 ~mersh~t~~a~taLLkCgaed~vEavkk~qnstk~LqKnn~~~lr~LA~~iahsL~Ns~d~gG--~vi~~~~-e~~sE~ 328 (415)
T KOG2105|consen 252 WMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGG--VVILHRK-EGDSEF 328 (415)
T ss_pred HHHHhcchHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcCcCc--eEEeehh-hccHHH
Confidence 9999999999999999998665542 333444444444444455555555544333334 3344443 357888
Q ss_pred HHHHHHHHHhccCCcEEEEEee-CCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCccCCCCCCCeeeecCCcCCH
Q 002074 878 VREAVLKVIEQKGMPVMVFSTD-ETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQV 956 (972)
Q Consensus 878 L~~~a~~l~~~~~~~vvll~~~-~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkGGgGk~~~AQG~g~~~~~l 956 (972)
++-+++.+.. ..+++++... +.+|..+++++.+. ....+...+++.+.|||| ||...+||+.++.+..
T Consensus 329 ~N~ianei~s--~EtlL~~~~~dek~GgLflLa~~~a--------svetLg~rvae~LeG~Ga-~K~Gr~QGKaTkmSrr 397 (415)
T KOG2105|consen 329 MNIIANEIGS--EETLLFLTVGDEKGGGLFLLAGPPA--------SVETLGPRVAEVLEGKGA-GKKGRFQGKATKMSRR 397 (415)
T ss_pred HHHHhhccCC--eeEEEEEEeeccCCceEEEecCCch--------hhhhhhHHHHHHhhcCCC-CcCcccccchhhhhHH
Confidence 8877776643 2344444443 33455666665432 334567789999999999 9999999999999888
Q ss_pred HHHHHHHHHHHHh
Q 002074 957 TPAMDLAAEFAAM 969 (972)
Q Consensus 957 ~~al~~~~~~l~~ 969 (972)
-++.+++..|+..
T Consensus 398 mea~AlLqDYiS~ 410 (415)
T KOG2105|consen 398 MEAQALLQDYIST 410 (415)
T ss_pred HHHHHHHHHHhhc
Confidence 8999999999864
No 14
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.76 E-value=1.3e-17 Score=200.81 Aligned_cols=144 Identities=24% Similarity=0.365 Sum_probs=118.1
Q ss_pred HhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhh
Q 002074 641 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 720 (972)
Q Consensus 641 ~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~ 720 (972)
.+.+|||+|||++|++++||......| +..++++|+||+...++|++++.+||+.||++|.+|+||+..+++++||.++
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~~~~~~~-~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPDAKLGIG-PPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEeC-CCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 368999999999999999986543444 5568899999998778999999999999999999999999999999999987
Q ss_pred ccch----hhcCCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeee-------cCC
Q 002074 721 NGLR----AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKG 789 (972)
Q Consensus 721 ~glr----~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~-------~~G 789 (972)
..-. .++....++.||||+|| ++ .++|+||||+|||+||.|+|++.++. +++
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig----------------~~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~ 148 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNG----------------DF-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQ 148 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEEC----------------CE-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcc
Confidence 4311 11222233479999998 33 36899999999999999999998553 689
Q ss_pred eEEEEEEeCHHHH
Q 002074 790 IRRITAVTTGLAY 802 (972)
Q Consensus 790 v~RI~~vtG~~A~ 802 (972)
++||++++=+...
T Consensus 149 l~Ri~g~~~~~~~ 161 (575)
T PRK12305 149 LQRIYGTAWETKE 161 (575)
T ss_pred eEEEEEEecCCHH
Confidence 9999998876654
No 15
>PLN02837 threonine-tRNA ligase
Probab=99.74 E-value=4.1e-17 Score=197.26 Aligned_cols=154 Identities=25% Similarity=0.424 Sum_probs=128.4
Q ss_pred CEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 002074 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELD 706 (972)
Q Consensus 627 ~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~p 706 (972)
.+|.+.+|...|...+.+||++|||++|++++||....+.|+.+ ++++|+||+. .++|++++.+||+.||++|.+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~-~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~p 107 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLP 107 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999999999999987656677654 5789999997 689999999999999999999999
Q ss_pred EEEEEeCHHHHHhhccchhhcCCcC---------CCCeEEEEECCcccccccCCCCccccceeeeeccCccccccccc--
Q 002074 707 VFSKEATLAEAKCINGLRAVFGEVY---------PDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA-- 775 (972)
Q Consensus 707 V~~~~~~~eeA~~~~glr~~f~e~y---------~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeI-- 775 (972)
|+..+++++||.++. .. .++.| .+.|||++|| +.+.++|+||||+|||+|
T Consensus 108 I~~~~v~~eEA~~~f--~~-~~~~~k~~Ll~~~~~~~Iriy~ig----------------~~~~D~c~GpHv~sTg~I~~ 168 (614)
T PLN02837 108 LVREEVSREEAQKRI--MA-INEPYKLEILEGIKEEPITIYHIG----------------EEWWDLCAGPHVERTGKINK 168 (614)
T ss_pred EEEEEecHHHHHHHH--HH-cCCchhHHHhccCCCCeEEEEEEC----------------CeEEEecCCCCccccccccc
Confidence 999999999999862 11 11111 3569999998 345778999999999999
Q ss_pred ccEEEEeEeee-------cCCeEEEEEEeCHHH
Q 002074 776 EAFALLSEEGI-------AKGIRRITAVTTGLA 801 (972)
Q Consensus 776 g~fkI~~~~~~-------~~Gv~RI~~vtG~~A 801 (972)
+.|+|++.++. ..-..||+.++-+.-
T Consensus 169 ~~~kl~~~~g~ywrg~~~~~~l~ri~g~~~~~~ 201 (614)
T PLN02837 169 KAVELESVAGAYWRGDEKNQMLQRIYGTAWESE 201 (614)
T ss_pred ceEEEEEeehhhhcccccCcceEEEEEEecCCH
Confidence 89999888762 234679988887654
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.71 E-value=2.2e-16 Score=192.45 Aligned_cols=165 Identities=23% Similarity=0.328 Sum_probs=131.8
Q ss_pred ccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHH
Q 002074 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (972)
Q Consensus 621 ~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~ 700 (972)
.++..+.+|+..-....+-..+.+||++|||++|++++||......| +..++++|+||+...++|++++.+||+.||++
T Consensus 49 ~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~-~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~i 127 (638)
T PRK00413 49 TPIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIG-PVIENGFYYDFDRERPFTPEDLEAIEKEMKEI 127 (638)
T ss_pred ccccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEEC-CccCCeEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34566777887777777777789999999999999999985433344 55678999999987789999999999999999
Q ss_pred HHcCCCEEEEEeCHHHHHhhccch------hhcCCcCC-CCeEEEEECCcccccccCCCCccccceeeeeccCccccccc
Q 002074 701 IKAELDVFSKEATLAEAKCINGLR------AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTR 773 (972)
Q Consensus 701 I~~n~pV~~~~~~~eeA~~~~glr------~~f~e~y~-~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTg 773 (972)
|.+|+||...+++.+||.++..-. .++..... +.||++++++ + .++|+||||+|||
T Consensus 128 I~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~----------------~-~d~c~G~hv~~Tg 190 (638)
T PRK00413 128 IKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGE----------------F-VDLCRGPHVPSTG 190 (638)
T ss_pred HhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECC----------------E-EEECCCCCCCccc
Confidence 999999999999999999863211 11111112 3799999983 3 5789999999999
Q ss_pred ccccEEEEeEeee-------cCCeEEEEEEeCHHHHH
Q 002074 774 EAEAFALLSEEGI-------AKGIRRITAVTTGLAYK 803 (972)
Q Consensus 774 eIg~fkI~~~~~~-------~~Gv~RI~~vtG~~A~~ 803 (972)
+||.|+|++.++. +++.+||+.++-....+
T Consensus 191 ~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~ 227 (638)
T PRK00413 191 KIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKE 227 (638)
T ss_pred CCceeEEEEEcceEEcCCCcchheEEEEeeecCCHHH
Confidence 9999999998553 67899999988877643
No 17
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.65 E-value=3.6e-15 Score=181.79 Aligned_cols=143 Identities=23% Similarity=0.346 Sum_probs=116.9
Q ss_pred HhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhh
Q 002074 641 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 720 (972)
Q Consensus 641 ~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~ 720 (972)
...+||++|||++|++++||......|. ..++++|+||+...++|++++.+||+.||++|.+|+||...+++++||.++
T Consensus 73 ~iy~hS~~hlL~~A~~~~~~~~~~~i~~-~~~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~ 151 (639)
T PRK12444 73 EIARHSAAHILAQAVKRLYGDVNLGVGP-VIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKL 151 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCC-cCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHH
Confidence 4689999999999999999976545554 448899999998778999999999999999999999999999999999986
Q ss_pred ccch------hhcCCcC-CCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeee-------
Q 002074 721 NGLR------AVFGEVY-PDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI------- 786 (972)
Q Consensus 721 ~glr------~~f~e~y-~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~------- 786 (972)
..-. .++.... .+.|||+++++ ..+.|+||||+|||+|+.|+|++.++.
T Consensus 152 F~~~~~~~K~~ll~~~~~~~~v~iy~~~~-----------------~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~ 214 (639)
T PRK12444 152 FQEMNDRLKLELLEAIPSGESITLYKQGE-----------------FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSN 214 (639)
T ss_pred HhhcCCchHHHHHhcCCCCCeEEEEEECC-----------------EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCC
Confidence 3211 0111111 14599999983 356799999999999999999988775
Q ss_pred cCCeEEEEEEeCHHH
Q 002074 787 AKGIRRITAVTTGLA 801 (972)
Q Consensus 787 ~~Gv~RI~~vtG~~A 801 (972)
+++++||+.++=+.-
T Consensus 215 ~~~l~Ri~g~a~~~~ 229 (639)
T PRK12444 215 NQVLQRIYGVAFSSQ 229 (639)
T ss_pred CcceEEEEEEecCCH
Confidence 678999999886554
No 18
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.56 E-value=2.7e-14 Score=171.89 Aligned_cols=141 Identities=26% Similarity=0.315 Sum_probs=115.7
Q ss_pred hhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccc
Q 002074 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 723 (972)
Q Consensus 644 ~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~gl 723 (972)
+||++|||++|++++++....+.|+.+ ++++|+||+...++|++++.+||+.||++|.+++||....++++||.++...
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 699999999999999987766788776 5679999998778999999999999999999999999999999999986320
Q ss_pred -----hhhcCCc-CCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeee-------cCCe
Q 002074 724 -----RAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 790 (972)
Q Consensus 724 -----r~~f~e~-y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~-------~~Gv 790 (972)
..++.+. +.+.||++.++ +++.+.|.||||+|||.|+.|+|++.+.. ..-+
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g----------------~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l 143 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWG----------------KAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKML 143 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeC----------------CEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCce
Confidence 0111221 34679999998 45789999999999999999999976552 2457
Q ss_pred EEEEEEeCHHH
Q 002074 791 RRITAVTTGLA 801 (972)
Q Consensus 791 ~RI~~vtG~~A 801 (972)
.||+.++=+..
T Consensus 144 ~Ri~g~~~~~~ 154 (563)
T TIGR00418 144 QRIYGTAWADK 154 (563)
T ss_pred EeeeeccCCCH
Confidence 79998875554
No 19
>PLN02908 threonyl-tRNA synthetase
Probab=99.43 E-value=4.6e-12 Score=155.51 Aligned_cols=144 Identities=22% Similarity=0.288 Sum_probs=114.9
Q ss_pred HhhhhhHHHHHHHHHHHHhCCceecccccccC-CceEEEeeCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Q 002074 641 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLP-EKLRFDFSHG-KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (972)
Q Consensus 641 ~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~-d~~r~Df~~~-~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~ 718 (972)
-+.+||++|||.+|++++||..+ ..|..+++ +++|+||... .++|++++.+||+.||++|.+++|++..+++++||.
T Consensus 120 ~~y~hS~ahlL~~A~~~~~~~~l-~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~ 198 (686)
T PLN02908 120 DTFWHSSAHILGEALELEYGCKL-CIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEAL 198 (686)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeE-EecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHH
Confidence 47899999999999999998654 46656654 7889999853 579999999999999999999999999999999999
Q ss_pred hhccc---h-hhcCCcCC--CCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeee------
Q 002074 719 CINGL---R-AVFGEVYP--DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI------ 786 (972)
Q Consensus 719 ~~~gl---r-~~f~e~y~--~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~------ 786 (972)
++..- . .+.. ..+ +.|+|.++|+ .+++|.||||+|||+|+.|+|++.++.
T Consensus 199 e~F~~~~~K~~ll~-~~~~~~~v~vY~~g~-----------------~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~ 260 (686)
T PLN02908 199 EMFSENKFKVEIIN-DLPEDATITVYRCGP-----------------LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDV 260 (686)
T ss_pred HHHhhCCcHHHHHh-hCCCCCeeEEEEECC-----------------EEEecCCCCCCCCCccceeEEEEecceEEcCCC
Confidence 76421 0 0111 122 3689999983 356699999999999999999988743
Q ss_pred -cCCeEEEEEEeCHHHHH
Q 002074 787 -AKGIRRITAVTTGLAYK 803 (972)
Q Consensus 787 -~~Gv~RI~~vtG~~A~~ 803 (972)
.....||+.++=+...+
T Consensus 261 ~~~~lqRi~G~sfp~~~~ 278 (686)
T PLN02908 261 DRESLQRVYGISFPDKKL 278 (686)
T ss_pred cchhhEEEeeeccCChHH
Confidence 24578999999887644
No 20
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.37 E-value=8.7e-13 Score=105.42 Aligned_cols=44 Identities=52% Similarity=0.869 Sum_probs=37.9
Q ss_pred eEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeeecCCeEEEE
Q 002074 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (972)
Q Consensus 735 VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~ 794 (972)
||||+|+ ++|.++||||||.|||+||.|+|++.++.++|++||+
T Consensus 1 vRvv~i~----------------~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEET----------------TTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEEC----------------CeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 7999998 5899999999999999999999999999999999996
No 21
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.09 E-value=1e-10 Score=93.34 Aligned_cols=44 Identities=55% Similarity=0.857 Sum_probs=40.5
Q ss_pred eEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeeecCCeEEEE
Q 002074 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (972)
Q Consensus 735 VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~ 794 (972)
||+|.|+ ++|.++||||||.||++||.|+|++.++...+.+||+
T Consensus 1 vriv~i~----------------~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIG----------------DFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEEC----------------CEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 6899998 5899999999999999999999999999888888984
No 22
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=9.2e-10 Score=131.17 Aligned_cols=137 Identities=28% Similarity=0.441 Sum_probs=104.8
Q ss_pred HhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhh
Q 002074 641 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 720 (972)
Q Consensus 641 ~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~ 720 (972)
-..+||++|||..|+.++++. ...| .+.++++++||+...++|++++.+||+.|+++|.++++|....+++++|++.
T Consensus 27 ~~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~ 103 (589)
T COG0441 27 EIIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAP 103 (589)
T ss_pred hhhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHH
Confidence 357899999999999999987 4677 5778999999998888999999999999999999999999999999999987
Q ss_pred ccchhhcCCcCCCCeEEEE-ECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeee-------cCCeEE
Q 002074 721 NGLRAVFGEVYPDPVRVVA-IGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRR 792 (972)
Q Consensus 721 ~glr~~f~e~y~~~VRVV~-Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~-------~~Gv~R 792 (972)
.+ .|. +.+|+ ++. |-+.+-.+...++|-|+||++||.| .|++++.++- ++-..|
T Consensus 104 f~-------~yK--~~~i~~~~~--------~~s~y~~~~~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~r 165 (589)
T COG0441 104 FG-------PYK--AELIDCKGH--------PLSEYSQGEFVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQR 165 (589)
T ss_pred hh-------hhH--HHHHhcCCC--------CceeEecCccccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeE
Confidence 43 232 11111 010 0001111235789999999999999 9999988753 233557
Q ss_pred EEEEeC
Q 002074 793 ITAVTT 798 (972)
Q Consensus 793 I~~vtG 798 (972)
|+-.+-
T Consensus 166 iygta~ 171 (589)
T COG0441 166 IYGTAF 171 (589)
T ss_pred Eecccc
Confidence 776655
No 23
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=97.85 E-value=2.8e-05 Score=67.54 Aligned_cols=65 Identities=26% Similarity=0.375 Sum_probs=51.4
Q ss_pred cEEEEEeeCCCCeEEEEEecCCcccccccccHH-HHHHHHhhhcCCccCCCCCCCeeeecCCcCCHHHHHHHHHH
Q 002074 892 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVS-EWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAE 965 (972)
Q Consensus 892 ~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~-~l~k~v~~~lgGkGGgGk~~~AQG~g~~~~~l~~al~~~~~ 965 (972)
++++++.. ++++.+.+.+++ +++.. +|++.+++.++|+|| |.+.+|||++++..+++++++.+.+
T Consensus 3 ~~i~~~~~--~~~~~~s~rs~~------~~~~~~~~~~~~~~~~~G~GG-Gh~~aAg~~~~~~~~l~~~~~~~~e 68 (68)
T PF02272_consen 3 PVIVFSEE--DGKIKVSARSSK------GVDDKGEILKELAEKLGGKGG-GHPDAAGGSIPKPEKLEEFLKALEE 68 (68)
T ss_dssp EEEEEEEE--SSTEEEEEEESS------SSTHH-HHHHHCHHHGTCEEE-EESSEEEEEESCGGHHHHHHHHHHH
T ss_pred EEEEEEEc--CCEEEEEEEECC------chhhHHHHHHHHHHHcCCCCC-CCHHHhcccCCCchhHHHHHHHhcC
Confidence 55666633 466777776544 35555 999999999999999 9999999999998779999887754
No 24
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=96.05 E-value=0.02 Score=59.57 Aligned_cols=181 Identities=21% Similarity=0.197 Sum_probs=102.8
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCC--------ccccc---ccccccccccc-cccCC--CCcccccccccccc
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--------LLFAN---AGMNQYKPIFL-GTADP--NTQLSKLTRACNTQ 126 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dpt--------llftn---AGm~qfk~~fl-G~~~p--~~~~~~~~r~~~~Q 126 (972)
+.+.+.+-++|.+.|+..|-++++++..+-. +.+.| ..+..+.|-.+ +.... .|......|+...+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 4678888999999999999999998742110 11111 11112222111 11000 00000124788999
Q ss_pred cccccCCCCCCCCCCCCCCCcchhhhhcccccccccc-----HHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCC
Q 002074 127 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAP 201 (972)
Q Consensus 127 kCiR~gGkhnDl~~VG~t~rHhTfFEMlGnfSfgdYf-----K~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~ 201 (972)
+|.|.. -..-+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++.+-.++. .
T Consensus 83 ~vfr~e-----~~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~~~~~~~--~--------- 143 (211)
T cd00768 83 PAFRNE-----GGRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKLDIVFVE--K--------- 143 (211)
T ss_pred ceeecC-----CCccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCcceEEEe--c---------
Confidence 999962 21111 3677889999999999644 3678899999996 588743322210 1
Q ss_pred cHHHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccc------
Q 002074 202 DNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFN------ 275 (972)
Q Consensus 202 D~E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~------ 275 (972)
....||. +.+|+|.+|+++...+ |..||+++-...-+
T Consensus 144 ---------------------~~~~~~~----~~~g~~~~i~~~~~~~------------~~~eig~~g~~~~~~~~~~~ 186 (211)
T cd00768 144 ---------------------TPGEFSP----GGAGPGFEIEVDHPEG------------RGLEIGSGGYRQDEQARAAD 186 (211)
T ss_pred ---------------------Cchhhcc----ccCCceEEEEEEccCC------------CeEEEeeceeecCchhHhhh
Confidence 0112332 4689999999975322 33566655433222
Q ss_pred ---cCCCCccccCCCCccccCchHHHH
Q 002074 276 ---RESDGSLKPLPAKHVDTGLGFERL 299 (972)
Q Consensus 276 ---~~~~g~l~~Lp~k~IDTGmGLERl 299 (972)
.+++++. ..| .+|=-|+|+||+
T Consensus 187 l~~~~~~~~~-~~p-~~~~~~~~~~R~ 211 (211)
T cd00768 187 LYFLDEALEY-RYP-PTIGFGLGLERL 211 (211)
T ss_pred hheecccccc-cCc-eeecCccCccCC
Confidence 2233433 344 466667999995
No 25
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=95.10 E-value=0.18 Score=54.59 Aligned_cols=177 Identities=21% Similarity=0.285 Sum_probs=100.4
Q ss_pred cCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-C
Q 002074 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-G 133 (972)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-G 133 (972)
.+|+-.+|-.+--+|..++|+.++-++.+= + |--.|-|. |+..--|. | -+++-+|+|.|.. |
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E---------v--GAGT~~P~Tflr~Lgpe-p----w~vaYvqPsRRP~DG 65 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDME---------V--GAGTFHPATFLRALGPE-P----WNAAYVQPSRRPTDG 65 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccccCCHHHHHHhcCCC-c----cccccccCCCCCCCC
Confidence 468999999999999999999999877652 2 34478884 43322221 1 3679999999973 1
Q ss_pred CCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhC
Q 002074 134 KHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (972)
Q Consensus 134 khnDl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~~ 213 (972)
+.-+ |--+ -.||.=|..+=-=|-.+ ..+.=.+=| +.+||||.
T Consensus 66 RYGe--NPNR-Lq~y~QfQVilKPsP~n-----iQelYL~SL-~~lGid~~----------------------------- 107 (283)
T PRK09348 66 RYGE--NPNR-LQHYYQFQVILKPSPDN-----IQELYLGSL-EALGIDPL----------------------------- 107 (283)
T ss_pred CcCC--Cchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCcc-----------------------------
Confidence 1111 1111 23444344332222221 111111111 23555554
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccC
Q 002074 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (972)
Q Consensus 214 ~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTG 293 (972)
+|=+||= +|| |+-=--|--|-==|+--| | +||=-. +=|.+ ..| + ++..-.+.-=
T Consensus 108 --~hDIRFV-EDn-WEsPTLGAwGlGWEVWld---G--------------MEITQF--TYFQQ-vGG-i-~~~pv~~EIT 161 (283)
T PRK09348 108 --EHDIRFV-EDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQF--TYFQQ-VGG-I-ECKPVTGEIT 161 (283)
T ss_pred --ccceeEe-ecC-CCCCcccccccceEEEEC---C--------------eeeeee--eeeee-eCC-e-eccccceeee
Confidence 3335552 455 543112555545566543 1 676533 22333 333 3 4555567778
Q ss_pred chHHHHHHHHhCCCCCccc
Q 002074 294 LGFERLTSILQNKMSNYDT 312 (972)
Q Consensus 294 mGLERl~~vlq~~~snydt 312 (972)
+||||||+.|||+.|+||.
T Consensus 162 YGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 162 YGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred hhHHHHHHHHhCCCceeee
Confidence 9999999999999999997
No 26
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=94.22 E-value=0.2 Score=60.81 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=36.9
Q ss_pred ceeeeeccC-cccccccccccEEEEeEeeec----CCeEEEEEEeCHHH
Q 002074 758 SISAELCGG-THLSNTREAEAFALLSEEGIA----KGIRRITAVTTGLA 801 (972)
Q Consensus 758 ~~d~elCgG-THV~nTgeIg~fkI~~~~~~~----~Gv~RI~~vtG~~A 801 (972)
+.-+.+|+| +||+|||.|+.||+++.++.+ .-..||+.++=+.-
T Consensus 74 ~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~~ 122 (545)
T PRK14799 74 GNKVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFETE 122 (545)
T ss_pred cCceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCCH
Confidence 346889999 999999999999999998842 45789999987654
No 27
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=94.06 E-value=0.43 Score=52.01 Aligned_cols=175 Identities=19% Similarity=0.294 Sum_probs=96.8
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-CCC
Q 002074 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKH 135 (972)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-Gkh 135 (972)
|+-.+|-.+--+|..++|+.++-++.+= + |--.|-|. |+..--|. | -+++-+|+|.|.. |+.
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~E---------v--GAGT~hPaTflralgpe-p----w~vAYVqPsRRP~DGRY 64 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDME---------K--GAGTMHPMTFLRSLGPE-P----WAVAYVEPSRRPTDGRY 64 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccc---------c--ccccCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCC
Confidence 5778889999999999999999877652 2 34478884 44332221 1 3779999999972 111
Q ss_pred CCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhCCC
Q 002074 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (972)
Q Consensus 136 nDl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~~~~ 215 (972)
- +|--+ -.||.=|..+=-=|-.+ ..+.=.+=| +.+||+|.
T Consensus 65 G--eNPNR-Lq~yyQfQVilKPsP~n-----iQelYL~SL-~~lGid~~------------------------------- 104 (293)
T TIGR00388 65 G--ENPNR-LQHYYQFQVVIKPSPDN-----IQELYLDSL-RALGIDPT------------------------------- 104 (293)
T ss_pred C--CCchh-hhheeeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc-------------------------------
Confidence 1 22222 22343344332222221 011111111 23455543
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCch
Q 002074 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (972)
Q Consensus 216 ~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGmG 295 (972)
+|=+||= +|| |+-=--|--|===|+--| | +||=- |+=|.+ ..| + ++..-.+.-=+|
T Consensus 105 ~hDIRFV-EDn-WEsPTLGAwGlGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EITYG 160 (293)
T TIGR00388 105 EHDIRFV-EDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-L-ECKPVSVEITYG 160 (293)
T ss_pred ccCeeEe-ecC-CCCCcccccccccEEEEC---C--------------eeeee--eeeeee-eCC-e-eccccceeeehh
Confidence 3445553 455 543112555544566543 1 66643 333333 233 3 344445677899
Q ss_pred HHHHHHHHhCCCCCccc
Q 002074 296 FERLTSILQNKMSNYDT 312 (972)
Q Consensus 296 LERl~~vlq~~~snydt 312 (972)
|||||+.|||+.|+||.
T Consensus 161 LERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 161 LERLAMYIQGVENVYDL 177 (293)
T ss_pred HHHHHHHHhCCCeeeee
Confidence 99999999999999997
No 28
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=0.028 Score=65.06 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEe
Q 002074 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDF 679 (972)
Q Consensus 642 m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df 679 (972)
..|||++|+|..|+.+.+|.+. ..|.. .+++|++|+
T Consensus 68 vfwhssahvlg~a~e~~~g~~l-c~Gpp-~~~gf~yd~ 103 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAHL-CIGPP-IEEGFYYDM 103 (560)
T ss_pred eeeehhhhHhhHHHHHhcCeeE-eeCCC-CcCceehhh
Confidence 5899999999999999999875 46764 457888875
No 29
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=90.52 E-value=2.2 Score=46.41 Aligned_cols=173 Identities=21% Similarity=0.319 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-CCCCC
Q 002074 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHND 137 (972)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-GkhnD 137 (972)
-.+|-.+--+|..++|+.++-++.+= -|--.|-|. |+..--|. | -+++-+|+|.|.. |+.-+
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~E-----------vGAGT~hPaTflr~Lgpe-p----w~vAYVqPsrRP~DGRYGe 65 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDME-----------VGAGTFHPATFLRALGPE-P----WNVAYVEPSRRPTDGRYGE 65 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCcCC
Confidence 35677788899999999998876652 234478884 43322221 1 3679999999972 11111
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhCCCCC
Q 002074 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 217 (972)
Q Consensus 138 l~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~~~~~~ 217 (972)
|--+ -.||.=|..+=-=|-.+ ..+.=.+=| +.+||||. +|
T Consensus 66 --NPNR-Lq~y~QfQViiKPsP~n-----iQelYL~SL-~~lGid~~-------------------------------~h 105 (279)
T cd00733 66 --NPNR-LQHYYQFQVIIKPSPDN-----IQELYLESL-EALGINPK-------------------------------EH 105 (279)
T ss_pred --Cchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc-------------------------------cc
Confidence 1111 23444344332222221 111111111 23455553 33
Q ss_pred cccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCchHH
Q 002074 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (972)
Q Consensus 218 I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGmGLE 297 (972)
=+||= +|| |+-=--|--|-==|+--| | +||=-. +=|.+ ..| + ++..-.+.-=+|||
T Consensus 106 DIRFV-EDn-WEsPTLGAwGLGWEVWld---G--------------MEITQF--TYFQQ-vGG-i-~~~pv~~EiTYGLE 161 (279)
T cd00733 106 DIRFV-EDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQF--TYFQQ-VGG-I-PCKPISVEITYGLE 161 (279)
T ss_pred CeeEe-ecC-CCCCcccccccccEEEEC---C--------------eeeeee--eeeee-eCC-e-eccccceeeehhHH
Confidence 35552 455 543112555555566643 1 676533 32333 333 3 45555677789999
Q ss_pred HHHHHHhCCCCCccc
Q 002074 298 RLTSILQNKMSNYDT 312 (972)
Q Consensus 298 Rl~~vlq~~~snydt 312 (972)
|||+.|||+.|+||.
T Consensus 162 RiamylQ~vd~v~dl 176 (279)
T cd00733 162 RIAMYLQGVDNVYDI 176 (279)
T ss_pred HHHHHHhCCCceecc
Confidence 999999999999996
No 30
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=89.15 E-value=2.8 Score=45.45 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=43.5
Q ss_pred cCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC
Q 002074 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG 132 (972)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g 132 (972)
++|+-..|--+--+|..++|+.++-++-+= + |--.|-|+ ||..--|. | =.|+-+|+|-|.+
T Consensus 3 ~~~~fQ~~IltLq~yW~~qGC~i~QpyD~e---------v--GAGT~hPaTfLralGpe-P----w~aAYVqPSRRP~ 64 (298)
T COG0752 3 KKLTFQGLILTLQNYWAEQGCTILQPYDME---------V--GAGTFHPATFLRALGPE-P----WNAAYVQPSRRPT 64 (298)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEecccccc---------c--ccCcCChHHHHHhcCCC-c----cceeeeccCCCCC
Confidence 468889999999999999999998766441 2 34478896 44333221 1 2568899999974
No 31
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=88.56 E-value=3.6 Score=53.11 Aligned_cols=177 Identities=20% Similarity=0.309 Sum_probs=102.0
Q ss_pred cCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-C
Q 002074 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-G 133 (972)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-G 133 (972)
..|+-++|-.+--+|+.++|+.++-++.+= + |--.|-|. |+..--|. | -+++-+|+|.|.. |
T Consensus 3 ~~~~~q~~i~~l~~~w~~~gc~~~qp~~~e---------~--gagt~~p~t~~~~l~~~-~----~~~ayv~p~~rp~d~ 66 (1000)
T PRK14908 3 QPLTMQDMLLALLRYWSEQGCIIHQGYDLE---------V--GAGTFNPATFLRVLGPE-P----WRVAYVEPSRRPDDG 66 (1000)
T ss_pred CcccHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccCcCCHHHHHhhcCCC-C----CcccccCCCCCCCCC
Confidence 348999999999999999999999877652 2 34467784 43322221 1 2678999999972 1
Q ss_pred CCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhC
Q 002074 134 KHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (972)
Q Consensus 134 khnDl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~~ 213 (972)
+.- +|--+ -.||+=|..+=-=|-++ ..+.=.+=| +.+|||+..
T Consensus 67 ryg--~npnr-l~~~~q~qvi~kp~p~~-----~q~~yl~sl-~~~gi~~~~---------------------------- 109 (1000)
T PRK14908 67 RYG--QNPNR-LQTYTQFQVILKPVPGN-----PQELYLESL-KAIGIDLRD---------------------------- 109 (1000)
T ss_pred CcC--CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHcCCCccc----------------------------
Confidence 111 12112 23555555543333332 111111111 235666543
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccC
Q 002074 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (972)
Q Consensus 214 ~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTG 293 (972)
|=+|| -+|| |+-=--|--|===|+--| | +||=-.- =|.+ ..| + ++..-.+.-=
T Consensus 110 ---~dirf-ved~-we~p~lga~glgwevw~~---g--------------meitqft--yfqq-~gg-~-~~~~~~~eit 162 (1000)
T PRK14908 110 ---HDIRF-VHDD-WENPTIGAWGLGWEVWLD---G--------------MEITQFT--YFQQ-AGG-K-PLDPISGEIT 162 (1000)
T ss_pred ---cceeE-eecC-CCCCcccccccccEEEEC---C--------------eeeeeee--eehh-cCC-e-eccccceeee
Confidence 33454 2455 543112555545565543 1 6765332 2222 333 3 4555677788
Q ss_pred chHHHHHHHHhCCCCCccc
Q 002074 294 LGFERLTSILQNKMSNYDT 312 (972)
Q Consensus 294 mGLERl~~vlq~~~snydt 312 (972)
+|||||++.|||+.+.||.
T Consensus 163 ygler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 163 YGIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred ccHHHHHHHHhCCCeeeee
Confidence 9999999999999999986
No 32
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=88.32 E-value=0.97 Score=50.25 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCccc-CCCC-Cccccccccccc---ccccccccCCCC----ccccccccccccccccc
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVP-VNDP-TLLFANAGMNQY---KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp-~~dp-tllftnAGm~qf---k~~flG~~~p~~----~~~~~~r~~~~QkCiR~ 131 (972)
++|-+.+-+||.++|-..|..--+.+ ..++ .-.|.-. .| ++++|-+.+--. -.+.+.|+-..-+|.|.
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~ 81 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRN 81 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeC
Confidence 57888899999999999885444432 1111 1112110 01 223332211000 00124577788899995
Q ss_pred CCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHcc
Q 002074 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLT 176 (972)
Q Consensus 132 gGkhnDl~~VG~t~rHhTfFEMlGn-fSfgdYfK~eai~~awe~lt 176 (972)
| +.|.||+.=|-||-- .+|.|| ++.+..+=+++.
T Consensus 82 -----e----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv~ 116 (269)
T cd00669 82 -----E----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLVR 116 (269)
T ss_pred -----C----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHHH
Confidence 4 337899999999843 377776 556655555543
No 33
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=85.85 E-value=4.5 Score=47.97 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------ccccccccCCCC----ccccccccccccccccc
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qf------k~~flG~~~p~~----~~~~~~r~~~~QkCiR~ 131 (972)
.|-+.+=+||.++|-..|..--|++. ++ -.|-..| ++.+|-+.+--. -.+.+.|+-..-+|.|.
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~-~~-----eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~ 211 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVAS-AT-----EGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRA 211 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecC-CC-----CCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEeccccc
Confidence 44456678999999998854444431 10 0112222 334443332100 00225688888999997
Q ss_pred CCCCCCCCCCCCCCCcchhhhhcccc-ccccccHHHHHHHHHHHcc
Q 002074 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (972)
Q Consensus 132 gGkhnDl~~VG~t~rHhTfFEMlGnf-SfgdYfK~eai~~awe~lt 176 (972)
. +.+ |.||.+=|-||--. +|.|| ++.++.+=+++.
T Consensus 212 E-------~~~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 212 E-------EHN-THRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred C-------CCC-CccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 3 332 56999888888544 77787 566655555443
No 34
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=84.31 E-value=3.7 Score=46.44 Aligned_cols=114 Identities=17% Similarity=0.256 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc-----------ccccccccCC---C-Cccccccccccc
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY-----------KPIFLGTADP---N-TQLSKLTRACNT 125 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qf-----------k~~flG~~~p---~-~~~~~~~r~~~~ 125 (972)
+.|-+.+=+||.++|-..|..--+.+.. -+.+|..+| ++.||-+++. . --.+.+.|+-..
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~-----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAP-----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCC-----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 4677888899999999988665555421 111222333 3445544321 0 001235788888
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHcccccC-CCCCceEEEE
Q 002074 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTKVYR-LPADRLYATY 190 (972)
Q Consensus 126 QkCiR~gGkhnDl~~VG~t~rHhTfFEMlGn-fSfgdYfK~eai~~awe~lt~~lg-l~~~rL~vT~ 190 (972)
-||.|+. .+ +.||.+=|-||-- ++|.|| ++.++..=+++..++. +.+.--.+||
T Consensus 80 gp~FRaE-------~~--~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~~~~~~~~~~it~ 135 (304)
T TIGR00462 80 CKVFRNG-------ER--GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELLGDPFAPWERLSY 135 (304)
T ss_pred cCceeCC-------CC--CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcEEEEH
Confidence 9999983 33 3699998888833 355676 6677777777665543 2222223576
No 35
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=84.02 E-value=9.5 Score=45.62 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccC-CCCCc-cccc-ccc-----ccc-ccccccccCC---CCcccccccccccccc
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV-NDPTL-LFAN-AGM-----NQY-KPIFLGTADP---NTQLSKLTRACNTQKC 128 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~-~dptl-lftn-AGm-----~qf-k~~flG~~~p---~~~~~~~~r~~~~QkC 128 (972)
++|-+.+=+||.++|...|..--+.+. .++.. +|.- +-+ +-| ++++|-+.+- .--.+.+.|+-..-+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 456667778999999998855444331 11111 1211 101 112 3444433211 0000125688888999
Q ss_pred cccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHc
Q 002074 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELL 175 (972)
Q Consensus 129 iR~gGkhnDl~~VG~t~rHhTfFEMlGn-fSfgdYfK~eai~~awe~l 175 (972)
.|.. + ..|.||..=|-||-- .+|.|| +|.+..+=+++
T Consensus 217 FR~E-------~-~~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~li 254 (450)
T PRK03932 217 FRAE-------N-SNTRRHLAEFWMIEPEMAFADL--EDNMDLAEEML 254 (450)
T ss_pred cccC-------C-CCCccccccccccceEEeccCH--HHHHHHHHHHH
Confidence 9973 2 235799888888754 477776 45555444443
No 36
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=83.44 E-value=6.1 Score=45.10 Aligned_cols=101 Identities=23% Similarity=0.393 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------ccccccccCC---CCcccccccccccccccc
Q 002074 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADP---NTQLSKLTRACNTQKCIR 130 (972)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qf------k~~flG~~~p---~~~~~~~~r~~~~QkCiR 130 (972)
-+.|.+.+-+||.++|...|..-.+.+. +. .++..+| +|.||-.++- .--+..+.|+-...+|.|
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~-~~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR 100 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITST-DT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFR 100 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecC-CC-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccc
Confidence 4578888999999999999966556542 11 1344445 4455544321 000111567888899999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhcccc-ccc-cccHHHHHHHHHHHcc
Q 002074 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELLT 176 (972)
Q Consensus 131 ~gGkhnDl~~VG~t~rHhTfFEMlGnf-Sfg-dYfK~eai~~awe~lt 176 (972)
.. + ..|.||+.=|-||.-. +|. || ++.|+.+=++|.
T Consensus 101 ~E----~----~~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll~ 138 (322)
T cd00776 101 AE----K----SNTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELIK 138 (322)
T ss_pred cC----C----CCcCCCcceeeccceeeeccCCH--HHHHHHHHHHHH
Confidence 73 1 2356999988888654 444 55 455555554443
No 37
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=81.41 E-value=0.77 Score=50.11 Aligned_cols=172 Identities=23% Similarity=0.345 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-CCCCCC
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHNDL 138 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-GkhnDl 138 (972)
.+|-.+--+|..++|+.++.++.+= -|--.|-|. |+..--|. | -+++-+|+|.|.. |+.-
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~e-----------vGAGT~~P~Tflr~Lgpe-p----w~vaYVqPsrRP~DGRYG-- 63 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIE-----------VGAGTFHPATFLRALGPE-P----WNVAYVQPSRRPTDGRYG-- 63 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS-------------SSGGGSHHHHTTTSSSS------EEEEEEEEEE-GGG--TT--
T ss_pred HHHHHHHHHHHHHCCCEEECCcccc-----------cccccCCHHHHHHhcCCC-C----ccccccccCCCCCCCccC--
Confidence 3566677889999999999877652 234467774 44433332 2 3789999999972 1111
Q ss_pred CCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhCCCCCc
Q 002074 139 DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 218 (972)
Q Consensus 139 ~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~~~~~~I 218 (972)
+|--+- .||.=|..+=-=|-++ ..+.=.+=| +.+||++. +|=
T Consensus 64 eNPNRL-q~y~QfQVilKPsP~n-----iq~lYL~SL-~~lGId~~-------------------------------~hD 105 (284)
T PF02091_consen 64 ENPNRL-QHYYQFQVILKPSPDN-----IQELYLESL-EALGIDPK-------------------------------EHD 105 (284)
T ss_dssp TSSS---SEEEEEEEEEES--TT-----HHHHHHHHH-HHCT--CC-------------------------------CS-
T ss_pred CCchHh-hhhheeEEEEcCCCcc-----HHHHHHHHH-HHhCCCcc-------------------------------ccc
Confidence 222222 2333333322222211 111111111 23555553 333
Q ss_pred ccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCchHHH
Q 002074 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFER 298 (972)
Q Consensus 219 ~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGmGLER 298 (972)
+||= +|| |+-=--|--|-==|+--| | +||=-.-+ |.+ ..| + ++..-.+.-=+||||
T Consensus 106 IRFV-EDn-WEsPtLGAwGlGWEVWld---G--------------MEITQfTY--FQQ-vGG-i-~~~pv~~EITYGLER 161 (284)
T PF02091_consen 106 IRFV-EDN-WESPTLGAWGLGWEVWLD---G--------------MEITQFTY--FQQ-VGG-I-DCKPVSVEITYGLER 161 (284)
T ss_dssp EEEE-EE--EEETTTTEEEEEEEEEET---T--------------CEEEEEEE--EEE-ETT-E-E-SS--EEEEEEHHH
T ss_pred eeEe-ecC-CCCCcccccccccEEEEC---C--------------EEEEEeee--eee-eCC-c-cccccceehhhhHHH
Confidence 4552 455 543112444544555543 1 67654332 333 223 3 455667788899999
Q ss_pred HHHHHhCCCCCccc
Q 002074 299 LTSILQNKMSNYDT 312 (972)
Q Consensus 299 l~~vlq~~~snydt 312 (972)
||+.|||+.++||.
T Consensus 162 iamylQ~vdnv~dl 175 (284)
T PF02091_consen 162 IAMYLQGVDNVYDL 175 (284)
T ss_dssp HHHHHCT-SSGGGS
T ss_pred HHHHHhCCCeeEee
Confidence 99999999999997
No 38
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=80.78 E-value=7.6 Score=41.42 Aligned_cols=106 Identities=21% Similarity=0.254 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccc--------ccccc--------------c--------cccccc
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK--------------P--------IFLGTA 110 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAG--------m~qfk--------------~--------~flG~~ 110 (972)
..|.+.|.+.|++.|...|....+.|.+ +|...| |..|. | ++....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV----LFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH----HHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 4688888999999999888776666631 122222 22221 1 111111
Q ss_pred CC--CCcccccccccccccccccCCCCCCCCCC-CCCCCcchhhhhcccccccc-----ccHHHHHHHHHHHcccccCCC
Q 002074 111 DP--NTQLSKLTRACNTQKCIRAGGKHNDLDDV-GKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYRLP 182 (972)
Q Consensus 111 ~p--~~~~~~~~r~~~~QkCiR~gGkhnDl~~V-G~t~rHhTfFEMlGnfSfgd-----YfK~eai~~awe~lt~~lgl~ 182 (972)
.+ .-| -|.+.+.+|.|. ....- |.. |-+- |.|.|-+.||+ ..-.|.++.++++|.+ ||++
T Consensus 82 ~~~~~lP----~r~~~~g~~fR~-----E~~~~~gl~-R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~-lgl~ 149 (235)
T cd00670 82 LSYRALP----LRLDQIGPCFRH-----EPSGRRGLM-RVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIARE-LGLP 149 (235)
T ss_pred ccchhcC----eeeeeecccccC-----CCCCCCCCh-hhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHHH-cCCc
Confidence 11 112 378889999995 44332 322 4444 89999999985 3456889999999954 7885
No 39
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=80.22 E-value=2 Score=49.20 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=28.7
Q ss_pred CCCCCeEEEeeeeccccccCCCCcccc--CCCCcccc--------CchHHHHHHHHhCCCC
Q 002074 258 NDDPTCIEIWNIVFIQFNRESDGSLKP--LPAKHVDT--------GLGFERLTSILQNKMS 308 (972)
Q Consensus 258 ~~~~r~lEiwNlVFmq~~~~~~g~l~~--Lp~k~IDT--------GmGLERl~~vlq~~~s 308 (972)
|....||||- ..|-+.| |....||. |||+||||++.-|.+.
T Consensus 274 ck~~~WiEil----------G~Gmv~p~vl~~~gid~~~~~G~AfG~GleRlaMl~ygi~D 324 (339)
T PRK00488 274 CKGTGWLEIL----------GCGMVHPNVLRNVGIDPEEYSGFAFGMGIERLAMLKYGIDD 324 (339)
T ss_pred cCCCCceEEe----------ccCccCHHHHHHcCCCcccceEEEEeecHHHHHHHHhCCcH
Confidence 3445689987 3454444 55555664 9999999999988764
No 40
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=79.08 E-value=22 Score=43.50 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=60.0
Q ss_pred ceEEEEecccCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCccCCCC
Q 002074 863 PFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGK 942 (972)
Q Consensus 863 ~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkGGgGk 942 (972)
.++|.. .++.....+--+|.++.+..+.++++++..++. ... .+ .. ...++|+.++++.+...++++|| |=
T Consensus 325 ~~~v~~-~~~~~~Gv~GivA~rl~~~~~kP~ivls~~~~~-~~k--gS-~R---s~~g~nl~~~l~~~~~~~l~~~G-GH 395 (539)
T TIGR00644 325 SVIVVA-GENWHPGVLGIVASRLAETFNKPVIVLAIDEGK-GAK--GS-AR---SISGIDLYDLLSELREALFLKFG-GH 395 (539)
T ss_pred cEEEEE-eCCCCCchHHHHHHHHHHHHCCCEEEEEEcCCc-eEE--Ee-ec---cCCCCcHHHHHHHHHHhhccccC-Ch
Confidence 344433 334455566667788888666777877754322 111 11 11 22479999999998886777777 54
Q ss_pred CCCeeeecCCcCCHHHHHHHHHHHHHh
Q 002074 943 GGLASGQGTDAAQVTPAMDLAAEFAAM 969 (972)
Q Consensus 943 ~~~AQG~g~~~~~l~~al~~~~~~l~~ 969 (972)
.+|=|-.-..++++++++.+.+++.+
T Consensus 396 -~~AaG~~i~~~~~~~f~~~l~~~~~~ 421 (539)
T TIGR00644 396 -AMAAGLTLKRENLEEFREKLEEKFKK 421 (539)
T ss_pred -HHcCeeEEcHHHHHHHHHHHHHHHHh
Confidence 33544444567888888888777654
No 41
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=77.08 E-value=0.51 Score=57.59 Aligned_cols=82 Identities=24% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeec---cccccCCCCccccCCCCc
Q 002074 213 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVF---IQFNRESDGSLKPLPAKH 289 (972)
Q Consensus 213 ~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVF---mq~~~~~~g~l~~Lp~k~ 289 (972)
+|++||.-- ...| -|.||+|=|.++ |+ .|.-+++| |+|....++ ....|-.-
T Consensus 116 i~~~~l~vt---~~~~----d~ea~~~w~~~~---g~--------------~~~~i~~~~~~~nfw~~g~~-gpcgpcse 170 (552)
T PF01411_consen 116 IPPDRLYVT---VFEW----DGEAGEIWEKIV---GG--------------PEERILVFGKKDNFWEMGDT-GPCGPCSE 170 (552)
T ss_dssp --GGGEEEE---EECC----ECCCCCCCCECC---TT--------------ECCCEEEE-CCEEEEESSTS-EEEEEEEE
T ss_pred CChHhEEEE---EeCC----chhHHHHHHHhc---CC--------------CHHHeEecCCCCceEECCCC-CCCCCCEE
Confidence 888888652 2233 248999998874 22 57778899 999976664 67899999
Q ss_pred cccCchHHHHHHHHhCCCCCccccccHHHHH
Q 002074 290 VDTGLGFERLTSILQNKMSNYDTDVFMPIFD 320 (972)
Q Consensus 290 IDTGmGLERl~~vlq~~~snydtdlf~pii~ 320 (972)
||+|+|+||..|..++.++.|+. .|..|.+
T Consensus 171 I~~d~G~e~~~~~~~~~~~~~~~-~~~eiwn 200 (552)
T PF01411_consen 171 IFYDRGEERGCWDSQGTPTCDDD-RFLEIWN 200 (552)
T ss_dssp EEEEEECCCHHHHHHSTSSHHHH-HECCCCC
T ss_pred EEECCCcccCccccccccccccc-cHHHHHH
Confidence 99999999999999999997765 5555433
No 42
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=73.18 E-value=3.4 Score=40.03 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.2
Q ss_pred HHHHHHHHcccccCCCCCceEEEEE
Q 002074 167 AIEWAWELLTKVYRLPADRLYATYF 191 (972)
Q Consensus 167 ai~~awe~lt~~lgl~~~rL~vT~~ 191 (972)
--+---++|+++||||++|+|+.|+
T Consensus 77 ~s~~i~~~l~~~LgIp~dRiYI~f~ 101 (113)
T PTZ00450 77 MTPRITAAITKECGIPAERIYVFYY 101 (113)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEEE
Confidence 3345668899999999999999997
No 43
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=69.13 E-value=3.6 Score=48.13 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=55.4
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhh----hhhhhhe---eeee
Q 002074 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVV----ADHIRTL---SFAI 361 (972)
Q Consensus 289 ~IDTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rvi----aDH~R~~---~f~i 361 (972)
.|+||-||=-|-++-.|..+.|-..+|.|+.+...++..+.+.+.++..- ++.++-..++ ||-+-+- +=+|
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vI--nkrStev~vg~~~RadI~v~e~fdtEli 149 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVI--NKRSTEVKVGGSSRADIAVREDFDTELI 149 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeee--ccccceeeecCcchhhhhhHhhhhhhhh
Confidence 68999999999999999999999999999999999988766665444221 1111112233 3333333 3378
Q ss_pred cCCCccCC
Q 002074 362 ADGSCPGN 369 (972)
Q Consensus 362 ~DGv~Psn 369 (972)
..|++||=
T Consensus 150 geGalps~ 157 (636)
T KOG1501|consen 150 GEGALPSL 157 (636)
T ss_pred ccccchhH
Confidence 89999883
No 44
>PRK06462 asparagine synthetase A; Reviewed
Probab=68.83 E-value=20 Score=41.29 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=23.6
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf~ 316 (972)
++==-|||+|||++.+-|.++.=|+-+|.
T Consensus 299 p~~G~glGidRLvm~~~g~~~Irdv~~FP 327 (335)
T PRK06462 299 PSAGFGIGVERLTRYICGLRHIREVQPFP 327 (335)
T ss_pred CCCeEEEcHHHHHHHHcCCCchheeeecc
Confidence 35667999999999999999887775554
No 45
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=66.42 E-value=5.5 Score=38.58 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.8
Q ss_pred HHHHHHcccccCCCCCceEEEEEC
Q 002074 169 EWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 169 ~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
+--.|||.++|+|||+|+|++||.
T Consensus 78 a~l~~il~~~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 78 AALTEILEKELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEec
Confidence 345689999999999999999984
No 46
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.62 E-value=3.7 Score=27.76 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.6
Q ss_pred CCCCcCcee
Q 002074 233 TGPCGPCSE 241 (972)
Q Consensus 233 ~GpCGPcsE 241 (972)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 599999974
No 47
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=59.19 E-value=8.8 Score=36.96 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-.+---++|.+.||+||+|+||.+++
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 56666677789999999999999999875
No 48
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=48.60 E-value=12 Score=35.94 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=18.6
Q ss_pred HHHHHHHcccccCCCCCceEEEEEC
Q 002074 168 IEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 168 i~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
.+--.+||.+.||||++|+|+.++.
T Consensus 76 s~~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 76 SAAITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHHHhCCCcCceEEEEEE
Confidence 3344578999999999999999874
No 49
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=48.04 E-value=18 Score=41.54 Aligned_cols=182 Identities=21% Similarity=0.279 Sum_probs=95.6
Q ss_pred ccCCCCC-CcCCChHHHHHHHHHhhhhCCCeeecCCCcc-----------c-----CCCCCcccccccccccccccccc-
Q 002074 48 MPGADPQ-VVEWPATKVRDTFFKFFEDKNHVNWKSSPVV-----------P-----VNDPTLLFANAGMNQYKPIFLGT- 109 (972)
Q Consensus 48 ~~~~~~~-~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslv-----------p-----~~dptllftnAGm~qfk~~flG~- 109 (972)
+||.... -..=...++.+...++|.+.|-+++...-+- | |+-.+.+|.+..-. | ..|-+
T Consensus 100 lp~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~--~-~lLRTH 176 (335)
T COG0016 100 LPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDRE--K-LLLRTH 176 (335)
T ss_pred CCCccCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCC--c-eeeccc
Confidence 5665322 2222367788888888888999888654332 2 23333444444221 1 11100
Q ss_pred c----------CCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhh-hhc-----cccccccccHHHHHHHHHH
Q 002074 110 A----------DPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFF-EML-----GNWSFGDYFKNEAIEWAWE 173 (972)
Q Consensus 110 ~----------~p~~~~~~~~r~~~~QkCiR~gGkhnDl~~VG~t~rHhTfF-EMl-----GnfSfgdYfK~eai~~awe 173 (972)
. ..+.| -|+.+..+|.| ||-.+ ..|+-.| .+= -|.||.| -.-.--+
T Consensus 177 Ts~vq~R~l~~~~~~P----~k~~~~grvyR-----~D~~D----aTHs~~FhQiEGlvvd~~~s~~~-----Lkg~L~~ 238 (335)
T COG0016 177 TSPVQARTLAENAKIP----IKIFSPGRVYR-----NDTVD----ATHSPEFHQIEGLVVDKNISFAD-----LKGTLEE 238 (335)
T ss_pred CcHhhHHHHHhCCCCC----ceEecccceec-----CCCCC----cccchheeeeEEEEEeCCccHHH-----HHHHHHH
Confidence 0 00113 38899999999 58443 5665544 343 4667654 2223335
Q ss_pred HcccccCCC-CCceEEEEECCCCcCCCCCcHHHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCC
Q 002074 174 LLTKVYRLP-ADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDA 252 (972)
Q Consensus 174 ~lt~~lgl~-~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~ 252 (972)
|+.+-+|.+ +=|.--+||- | | =|+-|+.....+
T Consensus 239 f~~~~fg~~~~vRfrpsyFP-----------------------------------F----T---EPS~Evdv~~~~---- 272 (335)
T COG0016 239 FAKKFFGEDVKVRFRPSYFP-----------------------------------F----T---EPSAEVDVYCPG---- 272 (335)
T ss_pred HHHHhcCCCcceEeecCCCC-----------------------------------C----C---CCeEEEEEEEcC----
Confidence 555545555 3344334431 2 3 358888854322
Q ss_pred CCCCCCCCCCeEEEeeeeccccccCCCCcccc---CCCCcc--ccCchHHHHHHHHhCCCC
Q 002074 253 ASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP---LPAKHV--DTGLGFERLTSILQNKMS 308 (972)
Q Consensus 253 ~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~---Lp~k~I--DTGmGLERl~~vlq~~~s 308 (972)
|..||||.+-=-..=| -|.+ .|...+ ==|||+||||++.-|.+.
T Consensus 273 -------~~~WlEi~G~Gmv~P~-----VL~~~G~~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 273 -------CGGWLEILGCGMVHPN-----VLEAVGIDPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred -------CCCEEEEecccccCHH-----HHHhcCCCCCcceEEEEeecHHHHHHHHhCCcH
Confidence 1468998853111000 0112 222233 569999999999988653
No 50
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=45.54 E-value=38 Score=41.03 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=70.8
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccc-cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCC
Q 002074 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAG 198 (972)
Q Consensus 120 ~r~~~~QkCiR~gGkhnDl~~VG~t~rHhTfFEMlGnfSfg-dYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~ 198 (972)
.|..+..+|.| ||=.+ ..|+-.|.=++-+-+| +.=-.+-+..+-+|+.. +|+..=|+.-+||-
T Consensus 358 ~k~fsigrVfR-----~d~~D----atH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~-lG~~~~RfrP~yfP------ 421 (494)
T PTZ00326 358 KKYFSIDRVFR-----NETLD----ATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRR-IGITKLRFKPAFNP------ 421 (494)
T ss_pred ceEEecCCEec-----CCCCC----CCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHh-cCCCceEEecCCCC------
Confidence 37788889999 46333 3454433322222222 12225678888888865 58755455445542
Q ss_pred CCCcHHHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeecccccc-C
Q 002074 199 LAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR-E 277 (972)
Q Consensus 199 l~~D~E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~-~ 277 (972)
| | =|+-||+..+.+ +.+||||-|.=..+=+- .
T Consensus 422 ----------------------f-----------T---EPS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL~ 454 (494)
T PTZ00326 422 ----------------------Y-----------T---EPSMEIFGYHPG-----------LKKWVEVGNSGIFRPEMLR 454 (494)
T ss_pred ----------------------C-----------C---CCeeEEEEEecC-----------CCcEEEEeCcCccCHHHHH
Confidence 1 2 357888865422 13589998865444111 1
Q ss_pred CCCccccCCCC--ccccCchHHHHHHHHhCCCC
Q 002074 278 SDGSLKPLPAK--HVDTGLGFERLTSILQNKMS 308 (972)
Q Consensus 278 ~~g~l~~Lp~k--~IDTGmGLERl~~vlq~~~s 308 (972)
+-| +|.+ .+==||||||+|++.-|.++
T Consensus 455 ~~G----i~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 455 PMG----FPEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred hcC----CCCcceEEEEEecHHHHHHHHhCCcH
Confidence 112 2333 56679999999999988553
No 51
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=42.28 E-value=13 Score=41.02 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcc
Q 002074 60 ATKVRDTFFKFFEDKNHVNWKSSPVV 85 (972)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslv 85 (972)
..++++.--++|...|...+..+++.
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v~ 44 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEVE 44 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSEE
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeEE
Confidence 66788888889999999999977773
No 52
>smart00438 ZnF_NFX Repressor of transcription.
Probab=41.35 E-value=11 Score=27.16 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=8.9
Q ss_pred CCCCcCceeEE
Q 002074 233 TGPCGPCSEIH 243 (972)
Q Consensus 233 ~GpCGPcsEi~ 243 (972)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999654
No 53
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=40.84 E-value=33 Score=42.15 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------ccccccccCCC---C-ccccccccccccccccc
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPN---T-QLSKLTRACNTQKCIRA 131 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qf------k~~flG~~~p~---~-~~~~~~r~~~~QkCiR~ 131 (972)
.|-+.|=+||.++|...|..-.|+... +..|-+.| ++++|-+.+-- - -.+.+.|+-..-+|+|+
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~------~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRa 291 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAP------SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRS 291 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCC------CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeC
Confidence 566777889999999988654444311 11233333 34455433210 0 00236788888999997
Q ss_pred CCCCCCCCCCCCCCCcchhhhhccc-cccc-cccHHHHHHHHHHHc
Q 002074 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELL 175 (972)
Q Consensus 132 gGkhnDl~~VG~t~rHhTfFEMlGn-fSfg-dYfK~eai~~awe~l 175 (972)
|+. .|.||++=|-||-- .+|+ +| .|.+..+=+++
T Consensus 292 -------E~s-~T~RHl~EFt~Le~E~~~~~~y--~evm~~~e~l~ 327 (550)
T PTZ00401 292 -------ENS-NTHRHLTEFVGLDVEMRINEHY--YEVLDLAESLF 327 (550)
T ss_pred -------CCC-CCCCCccchhhhhhhhHhcCCH--HHHHHHHHHHH
Confidence 333 36799999999977 7886 56 34444444443
No 54
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=39.00 E-value=36 Score=41.04 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHhhhhCCCeeecCCCc
Q 002074 59 PATKVRDTFFKFFEDKNHVNWKSSPV 84 (972)
Q Consensus 59 ~~~eiR~~Fl~fF~~~gH~~v~sssl 84 (972)
...++|+.+-++|.+.|.+.++..|.
T Consensus 222 Pl~~~~~ei~~if~~mGF~e~~~g~~ 247 (492)
T PLN02853 222 PLLKVRQQFRKIFLQMGFEEMPTNNF 247 (492)
T ss_pred HHHHHHHHHHHHHHhCCCEEecCCCC
Confidence 47899999999999999999974443
No 55
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=37.94 E-value=46 Score=38.59 Aligned_cols=59 Identities=25% Similarity=0.325 Sum_probs=38.6
Q ss_pred cCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCcccc-------CCCCccccCchHHHHHHHHhCCCC
Q 002074 237 GPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP-------LPAKHVDTGLGFERLTSILQNKMS 308 (972)
Q Consensus 237 GPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~-------Lp~k~IDTGmGLERl~~vlq~~~s 308 (972)
|--||+|--|.-- .++ +..-+|-|+||..- |-|+| +|.++..-|.|.||||+||.|.+.
T Consensus 279 ~TQTEVyAyHPkL-~gs--~~kysdgWiEiATF----------GlYSP~ALaeY~Id~pVMNLGlGVERlaMIl~g~~D 344 (536)
T COG2024 279 GTQTEVYAYHPKL-VGS--IEKYSDGWIEIATF----------GLYSPIALAEYGIDYPVMNLGLGVERLAMILHGADD 344 (536)
T ss_pred CccceEEEecccc-ccc--ccccCCCcEEEEee----------cccChHHHHHcCCCCceeecchhHHHHHHHHhCchH
Confidence 4579999544210 001 12345789999853 33444 567777789999999999998543
No 56
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=34.02 E-value=5.4e+02 Score=32.06 Aligned_cols=95 Identities=13% Similarity=0.062 Sum_probs=54.0
Q ss_pred eEEEEecccCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHHHHhh----hcCCccC
Q 002074 864 FCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQ----PLKGRCG 939 (972)
Q Consensus 864 ~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~----~lgGkGG 939 (972)
++|..- ++...-.+=-+|.+|.+..+.++++++..+ ++. +-++.. ...++|+.+.++.+.. .+-.-||
T Consensus 355 ~ivv~~-~~wh~GViGIVAsrl~e~y~rP~ivls~~~-~g~---~kGS~R---Si~g~~l~~aL~~~~~~~~~ll~~fGG 426 (575)
T PRK11070 355 GLAMYH-PEWHQGVVGILASRIKERFHRPVIAFAPAG-DGT---LKGSGR---SIQGLHMRDALERLDTLYPGLILKFGG 426 (575)
T ss_pred EEEEEe-CCCCccHHHHHHHHHHHHHCCCEEEEEEcC-CCe---EEEEEe---CCCCCcHHHHHHHhhhcccchhhccCC
Confidence 444333 355666777788889886667778777532 232 122112 1246899988887542 3333332
Q ss_pred CCCCCCeeeecCCcCCHHHHHHHHHHHHHh
Q 002074 940 KGKGGLASGQGTDAAQVTPAMDLAAEFAAM 969 (972)
Q Consensus 940 gGk~~~AQG~g~~~~~l~~al~~~~~~l~~ 969 (972)
-.+|=|-.-..++++++.+.+.+++.+
T Consensus 427 ---H~~AaG~ti~~e~l~~f~~~l~~~~~~ 453 (575)
T PRK11070 427 ---HAMAAGLSLEEDKFELFQQRFGELVTE 453 (575)
T ss_pred ---hHHhCcceeCHHHHHHHHHHHHHHHHH
Confidence 233433333667888877777766643
No 57
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=32.81 E-value=23 Score=39.69 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCc--cccccccccccc-ccccccCCCC----cccccccccccccccccCC
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTL--LFANAGMNQYKP-IFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptl--lftnAGm~qfk~-~flG~~~p~~----~~~~~~r~~~~QkCiR~gG 133 (972)
++|-+.+=+||.++|-..|..=-|++...+.. .++..=- ..+. ++|-+.+--. -.+...|+-...+|.|.
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~-- 81 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRD-- 81 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccCHHHHHHHHHhcCcCcEEEeccceeC--
Confidence 46777888999999999885444443222221 2111100 0011 1132221000 00124678888999997
Q ss_pred CCCCCCCCCCCCCcchhhhhcccc-ccccccHHHHHHHHHHHcc
Q 002074 134 KHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (972)
Q Consensus 134 khnDl~~VG~t~rHhTfFEMlGnf-SfgdYfK~eai~~awe~lt 176 (972)
|+.+ ++||. =|-|++-. +|.|| ++.++..=+++.
T Consensus 82 -----e~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~ 116 (280)
T cd00777 82 -----EDLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLK 116 (280)
T ss_pred -----CCCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHH
Confidence 3344 45665 77888544 77776 556655555544
No 58
>PLN02850 aspartate-tRNA ligase
Probab=32.76 E-value=50 Score=40.46 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCC-CC-Cccccccccccc-ccccccccCC---CC-cccccccccccccccccCCC
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DP-TLLFANAGMNQY-KPIFLGTADP---NT-QLSKLTRACNTQKCIRAGGK 134 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~-dp-tllftnAGm~qf-k~~flG~~~p---~~-~~~~~~r~~~~QkCiR~gGk 134 (972)
.|-+.|=+||.++|...|..--|++.. ++ .-.|.- ..| ++++|-+.+- .- -.+.+.|+-..-+|+|+.
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE-- 304 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAE-- 304 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccC--
Confidence 556777899999999888544443311 11 011211 011 4555544321 00 012367888899999973
Q ss_pred CCCCCCCCCCCCcchhhhhcccc-ccc-cccHHHHHHHHHHH
Q 002074 135 HNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWEL 174 (972)
Q Consensus 135 hnDl~~VG~t~rHhTfFEMlGnf-Sfg-dYfK~eai~~awe~ 174 (972)
+ ..|.||.+=|-||--. +|+ +| +|.+..+=++
T Consensus 305 -----~-s~t~RHl~EFt~Le~Em~~~~~y--~evm~~~E~l 338 (530)
T PLN02850 305 -----D-SFTHRHLCEFTGLDLEMEIKEHY--SEVLDVVDEL 338 (530)
T ss_pred -----C-CCCCccchhhccchhhhhhhcCH--HHHHHHHHHH
Confidence 3 2578999999998655 777 45 3444444333
No 59
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=31.75 E-value=45 Score=40.05 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=15.8
Q ss_pred ccccCchHHHHHHHHhCCC
Q 002074 289 HVDTGLGFERLTSILQNKM 307 (972)
Q Consensus 289 ~IDTGmGLERl~~vlq~~~ 307 (972)
++==|||+||||++.-|.+
T Consensus 317 V~AFGIGVERlAMi~ygi~ 335 (533)
T TIGR00470 317 VMNLGLGVERLAMILYGYE 335 (533)
T ss_pred eEEEEecHHHHHHHHhCCc
Confidence 3667999999999998844
No 60
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=30.54 E-value=2.2e+02 Score=32.69 Aligned_cols=198 Identities=15% Similarity=0.151 Sum_probs=110.4
Q ss_pred cCCCCccccCchHHHHHHHHhCCCCCccc------cccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhh---hhhhh
Q 002074 284 PLPAKHVDTGLGFERLTSILQNKMSNYDT------DVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRV---VADHI 354 (972)
Q Consensus 284 ~Lp~k~IDTGmGLERl~~vlq~~~snydt------dlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rv---iaDH~ 354 (972)
...-..+-++-+++|+..+...+...+.. .-|......+.+..... . +.. . -..||- .-..+
T Consensus 33 ~~d~~~~~~~~~~~~l~~l~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~-----~-p~~-~--a~~~~~d~~~f~~i 103 (335)
T PF11867_consen 33 GFDYSKFFEASPFERLELLDDAVDHILSLEDEERRKRFLKLVKELSKAYALC-----L-PDP-E--AEEYRDDIAFFQAI 103 (335)
T ss_pred CCChHHhcCCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH-----C-CCH-H--HHHHHHHHHHHHHH
Confidence 34444567788899999988877766642 23444444444332210 0 111 0 012221 33455
Q ss_pred hheeeeecCCCc-cCCCCcchHHHHHHHHHHHHhH-----hhhCCCcchhhhHHHHHHHHhcc-cChhhHHcHHHHHHHH
Q 002074 355 RTLSFAIADGSC-PGNEGREYVLRRILRRAVRYGS-----EVLKAQDGFFNGLVNIVVKVMGD-VFPELKQREAHIREII 427 (972)
Q Consensus 355 R~~~f~i~DGv~-Psn~grgYvlRrilRRa~~~~~-----~~l~~~~~~l~~lv~~v~~~m~~-~ypel~~~~~~I~~ii 427 (972)
|+...-+..+-- |+....+.=+|.||-.++..-. ...|.+.|=++-|-+...+.+.. .+|.++. +.|+..|
T Consensus 104 r~~i~k~~~~~~~~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~--e~L~~~l 181 (335)
T PF11867_consen 104 RAAIRKLYSDDDGPDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKA--ELLEKLL 181 (335)
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHH--HHHHHHH
Confidence 666555544444 8888899999999999998531 11255555455555555555543 2777654 6788888
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHH------cCceeChhhHHHHHH
Q 002074 428 AAEEASFGKTLL----KGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEE------RGLLVDIEGFNNAMD 497 (972)
Q Consensus 428 ~~EE~~F~~tl~----~g~~~l~~~i~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e------~g~~vD~~~f~~~~~ 497 (972)
+.+-....+.-- +=.++|+++|.+.+++.++-+.++.-. ++|.++|.++ .|++-++-.|+.++.
T Consensus 182 ~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eL------i~la~el~~~~~r~~~~gLseeE~AFyd~L~ 255 (335)
T PF11867_consen 182 RDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEEL------IKLAKELREEEERAEELGLSEEELAFYDALA 255 (335)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH------HHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 887766543211 123456666766666677777776421 2445555443 355444445666654
Q ss_pred H
Q 002074 498 E 498 (972)
Q Consensus 498 ~ 498 (972)
+
T Consensus 256 ~ 256 (335)
T PF11867_consen 256 K 256 (335)
T ss_pred c
Confidence 3
No 61
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.54 E-value=28 Score=40.35 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=26.6
Q ss_pred eEecccchhhhhccccccccccCCCCCCcCCChHHHHHHHHHhhhhCCC
Q 002074 28 AVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNH 76 (972)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH 76 (972)
+.+||--+.++++..+ -|+-..-...-+|+.|-++|.+-+-
T Consensus 50 ~~~Nv~~~i~~~~gr~--------lh~~~~hplg~lr~~i~~~f~~~~~ 90 (436)
T KOG2783|consen 50 AWSNVTPSILSLLGRN--------LHQKESHPLGILRQRIEDYFYKTYR 90 (436)
T ss_pred ccccCChhhhhhcccc--------hhhhccCchhHHHHHHHHHHHHhhc
Confidence 3456665665555443 2444444577899999999998755
No 62
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=25.82 E-value=37 Score=38.74 Aligned_cols=105 Identities=18% Similarity=0.324 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCC--ccccccc--cccc-ccccccccCCCC---cc-ccccccccccccccc
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--LLFANAG--MNQY-KPIFLGTADPNT---QL-SKLTRACNTQKCIRA 131 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dpt--llftnAG--m~qf-k~~flG~~~p~~---~~-~~~~r~~~~QkCiR~ 131 (972)
+.|-+.+=+||.++|...|..--+++...+. =.|.--. ..-| +|.||-+.+--. -+ +.+.|+-...+|.|.
T Consensus 26 s~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~ 105 (335)
T PF00152_consen 26 SAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRN 105 (335)
T ss_dssp HHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-B
T ss_pred HHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccchhhhheecceec
Confidence 4567778899999999998655555532222 2333220 0011 344554432100 00 114566777999997
Q ss_pred CCCCCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHc
Q 002074 132 GGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELL 175 (972)
Q Consensus 132 gGkhnDl~~VG~t~rHhTfFEMlG-nfSfgdYfK~eai~~awe~l 175 (972)
. +. .|.||..=|-||- -.+|.||.. .|+.+-+++
T Consensus 106 E-------~~-~~~rHl~EFtmLE~e~a~~~~~~--lm~~~e~li 140 (335)
T PF00152_consen 106 E-------ES-RTRRHLPEFTMLEWEMAFADYDD--LMDLIEELI 140 (335)
T ss_dssp S-------SS-CBTTBSSEEEEEEEEEETSSHHH--HHHHHHHHH
T ss_pred c-------Cc-ccccchhhhhhhhhccccCcHHH--hHHHHHHHH
Confidence 3 22 5899998777873 345677644 444444443
No 63
>PLN02850 aspartate-tRNA ligase
Probab=24.30 E-value=37 Score=41.57 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.7
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf~ 316 (972)
+|==-|||||||++++-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 35578999999999999999988886664
No 64
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=24.08 E-value=39 Score=40.53 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=23.7
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf~ 316 (972)
++==-|||+|||++.+-|.+++=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 56667999999999999998887775553
No 65
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=23.08 E-value=41 Score=41.58 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=25.2
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf~ 316 (972)
+|==-|||||||++.+-|.+++=|+-+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 67778999999999999999998886654
No 66
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=23.07 E-value=41 Score=38.54 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhCCCCCcccccc
Q 002074 293 GLGFERLTSILQNKMSNYDTDVF 315 (972)
Q Consensus 293 GmGLERl~~vlq~~~snydtdlf 315 (972)
|+|||||++.+-|.++.=|+-.|
T Consensus 302 glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 302 GIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred EecHHHHHHHHcCCCcHHhcccC
No 67
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=22.83 E-value=42 Score=41.24 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.2
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf~ 316 (972)
+|==-|+|||||++++-|.++.=|+-+|.
T Consensus 514 PhgG~GiGlERLvM~~lg~~nIR~v~lFP 542 (550)
T PTZ00401 514 PHGGFGVGLERVVMLYLGLSNVRLASLFP 542 (550)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeecCC
Confidence 35567999999999999999988876664
No 68
>PLN02532 asparagine-tRNA synthetase
Probab=22.22 E-value=44 Score=41.67 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=24.9
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf~ 316 (972)
+|==-|||||||++.+-|.+++=|+-+|.
T Consensus 597 PHgGfGLG~ERLvm~ltGl~nIRDvi~FP 625 (633)
T PLN02532 597 KHSGFSLGFELMVLFATGLPDVRDAIPFP 625 (633)
T ss_pred CCeEEEEhHHHHHHHHhCCCchheEeecC
Confidence 67778999999999999999988875554
No 69
>PLN02603 asparaginyl-tRNA synthetase
Probab=22.20 E-value=45 Score=41.17 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=25.2
Q ss_pred CCccccCchHHHHHHHHhCCCCCccccccH
Q 002074 287 AKHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (972)
Q Consensus 287 ~k~IDTGmGLERl~~vlq~~~snydtdlf~ 316 (972)
-+|---|||+|||++.+-|.+|+=|+-+|.
T Consensus 528 pPhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 528 VPHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred CCCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 357778999999999999999988875554
No 70
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=21.86 E-value=1.9e+02 Score=32.79 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcc-----cccccccccccc---cccccC---C-------CC--ccccc
Q 002074 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLL-----FANAGMNQYKPI---FLGTAD---P-------NT--QLSKL 119 (972)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptll-----ftnAGm~qfk~~---flG~~~---p-------~~--~~~~~ 119 (972)
-.+|++.+.+.|+++|...|.+..+-|. + ++ ..+..|..|.+- .++..+ + .+ .....
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~-~--~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~~~~~~p 87 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYL-D--TLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARAVSTRLRDRPLP 87 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhH-H--HhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHHHHHhcccCCCC
Confidence 5689999999999999999966554442 1 11 234446666442 111111 0 00 00112
Q ss_pred ccccccccccccCCCCCCCCCCCCC-CCcchhhhhccccccccccHHHHHHHHHHHcccccCCC
Q 002074 120 TRACNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLP 182 (972)
Q Consensus 120 ~r~~~~QkCiR~gGkhnDl~~VG~t-~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~ 182 (972)
.|.+-+.+|.|.. =..-|+. ..+.+-||..|.=|. .=-.|.|..|++.|.+ +|+.
T Consensus 88 ~r~~y~g~VfR~~-----~~~~gr~re~~Q~g~Eiig~~~~--~adaEvi~l~~~~l~~-lg~~ 143 (314)
T TIGR00443 88 LRLCYAGNVFRTN-----ESGAGRSREFTQAGVELIGAGGP--AADAEVIALLIEALKA-LGLK 143 (314)
T ss_pred eEEEEeceEeecC-----CCcCCCcccccccceEEeCCCCc--hhHHHHHHHHHHHHHH-cCCC
Confidence 4778889999962 2223333 345778999997766 2347999999999975 7875
No 71
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=21.80 E-value=1.4e+02 Score=32.83 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCC--CCCc-cccccccccccc-----cccccc-CC-------CCcc--ccccc
Q 002074 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVN--DPTL-LFANAGMNQYKP-----IFLGTA-DP-------NTQL--SKLTR 121 (972)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~--dptl-lftnAGm~qfk~-----~flG~~-~p-------~~~~--~~~~r 121 (972)
-+.|++.+.+.|+++|...|....+.|.+ -.+. -....-|..|.+ +.|-.. .| .++. ....|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k 84 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLPLK 84 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCCeE
Confidence 35789999999999999999777776631 0000 001111333321 111000 00 0110 01247
Q ss_pred ccccccccccCCCCCCCCCCCCC-CCcchhhhhccccccccccHHHHHHHHHHHcccccCCCC
Q 002074 122 ACNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPA 183 (972)
Q Consensus 122 ~~~~QkCiR~gGkhnDl~~VG~t-~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~ 183 (972)
...+++|.|.. . ..=|+. ..+..-||++|.-|.- --.|.|..++++|. .||++.
T Consensus 85 ~~y~g~vfR~e----~-~~~g~~re~~Q~g~Eiig~~~~~--~daE~i~l~~~~l~-~lg~~~ 139 (261)
T cd00773 85 LYYIGPVFRYE----R-PQKGRYREFYQVGVEIIGSDSPL--ADAEVIALAVEILE-ALGLKD 139 (261)
T ss_pred EEEEcCEEecC----C-CCCCCccceEEeceeeeCCCChH--HHHHHHHHHHHHHH-HcCCCc
Confidence 88999999962 1 112333 3346678899886552 13789999999985 478754
No 72
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=21.76 E-value=46 Score=40.43 Aligned_cols=100 Identities=16% Similarity=0.307 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc--------ccccccccCCC---Cc-ccccccccccccc
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPN---TQ-LSKLTRACNTQKC 128 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qf--------k~~flG~~~p~---~~-~~~~~r~~~~QkC 128 (972)
+.|-+.+=+||.++|-..|..--|.+.. ..|..-+| ++.||-.++-- -- .+.+.|+-..-+|
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~------gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~ 249 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIP------GGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRN 249 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCC------CCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecc
Confidence 3455667789999999988544444321 01212222 33445443210 00 0135677888899
Q ss_pred cccCCCCCCCCCCCCCCCcchhhhhccc-ccccccc-----HHHHHHHHHHHc
Q 002074 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYF-----KNEAIEWAWELL 175 (972)
Q Consensus 129 iR~gGkhnDl~~VG~t~rHhTfFEMlGn-fSfgdYf-----K~eai~~awe~l 175 (972)
+|.. .+ +.||..=|-||-- ++|.||- -++-|..++.-+
T Consensus 250 FRnE-------~~--~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l 293 (496)
T TIGR00499 250 FRNE-------GV--DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQEL 293 (496)
T ss_pred eecC-------CC--CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9973 33 3599999999865 4778872 344455444444
No 73
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=21.36 E-value=35 Score=41.09 Aligned_cols=197 Identities=22% Similarity=0.262 Sum_probs=90.9
Q ss_pred Cccccccccc--ceeeehhhhcCcceeeeEecccchhhh---hccccccccccCCCCCCcC--CChHHHHHHHHHhhhhC
Q 002074 2 TGLLRKTETA--SFVATARVLLNPSLTLAVTNHHHSLIS---RFSASAVAAMPGADPQVVE--WPATKVRDTFFKFFEDK 74 (972)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~eiR~~Fl~fF~~~ 74 (972)
+|-+-+|.|. |.-++--.||.+||. -.-.-||.|-. |+----|--+ ++|+++. +.-+.|.+..=.|+.++
T Consensus 121 ~G~~~~T~~GelSv~v~~~~lLsKsL~-pLPeK~hgL~D~E~RyR~RylDLi--~N~e~r~~f~~Rs~ii~~iR~fl~~~ 197 (502)
T COG1190 121 EGPLFKTKTGELSVSVEELRLLSKSLR-PLPEKFHGLTDKEIRYRQRYLDLI--VNPESRQTFIKRSKIIRAIREFLDDR 197 (502)
T ss_pred eeeeeecCCCceEEEEEEEeeecccCC-CCChhhcCCccHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3445555443 333444456677764 34456666521 2211111111 1111111 22334555555799999
Q ss_pred CCeeec--CCCcccCCCCCccccccccccccc-ccccccCCCCcc-----cccccccccccccccCCCCCCCCCCCCCCC
Q 002074 75 NHVNWK--SSPVVPVNDPTLLFANAGMNQYKP-IFLGTADPNTQL-----SKLTRACNTQKCIRAGGKHNDLDDVGKDTY 146 (972)
Q Consensus 75 gH~~v~--ssslvp~~dptllftnAGm~qfk~-~flG~~~p~~~~-----~~~~r~~~~QkCiR~gGkhnDl~~VG~t~r 146 (972)
|-..|. =-..||-+..---|++- +|.+.= .+|-.++--. | +.+.|+--.-++.| |=|.|.+
T Consensus 198 gFlEVETP~lq~i~GGA~ArPF~Th-hNald~dlyLRIApELy-LKRliVGG~erVfEIgr~FR---------NEGid~t 266 (502)
T COG1190 198 GFLEVETPMLQPIPGGAAARPFITH-HNALDMDLYLRIAPELY-LKRLIVGGFERVFEIGRNFR---------NEGIDTT 266 (502)
T ss_pred CCeEeccccccccCCCcccccceee-ecccCCceEEeeccHHH-HHHHHhcCchhheeeccccc---------cCCCccc
Confidence 998884 34444433333333332 222221 2222211000 0 00112333334444 5688899
Q ss_pred cchhhhhccc-ccccccc-----HHHHHHHHHHHccc---------ccCCCCCceEEEEECCC-CcC-----CCCCcHHH
Q 002074 147 HHTFFEMLGN-WSFGDYF-----KNEAIEWAWELLTK---------VYRLPADRLYATYFGGD-EKA-----GLAPDNEA 205 (972)
Q Consensus 147 HhTfFEMlGn-fSfgdYf-----K~eai~~awe~lt~---------~lgl~~~rL~vT~~~~~-~~~-----~l~~D~E~ 205 (972)
|--=|.||-. |...||- -++-|+.+-.-++. .+.+.+.-.-+|+++-= +.+ -+..|+++
T Consensus 267 HNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~ 346 (502)
T COG1190 267 HNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDDLFDDEEA 346 (502)
T ss_pred cCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCccccccCCHHHH
Confidence 9888888865 4566762 34444443333332 12333433344554210 011 24578899
Q ss_pred HHHHHhh
Q 002074 206 RDIWLKF 212 (972)
Q Consensus 206 ~~iW~~~ 212 (972)
+.+-+++
T Consensus 347 ~~~ak~~ 353 (502)
T COG1190 347 KELAKKH 353 (502)
T ss_pred HHHHHHh
Confidence 9998877
No 74
>PLN02221 asparaginyl-tRNA synthetase
Probab=21.24 E-value=47 Score=41.05 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=33.8
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHH
Q 002074 119 LTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWEL 174 (972)
Q Consensus 119 ~~r~~~~QkCiR~gGkhnDl~~VG~t~rHhTfFEMlGn-fSfgdYfK~eai~~awe~ 174 (972)
+.|+-...+|+|+- + ..|.||++=|-||-- ++|.|| ++.+..+=++
T Consensus 326 l~rVfeIgP~FRAE-------~-s~T~RHL~EFtmlE~Emaf~d~--~dvm~l~E~l 372 (572)
T PLN02221 326 LSSVYTFGPTFRAE-------N-SHTSRHLAEFWMVEPEIAFADL--EDDMNCAEAY 372 (572)
T ss_pred cCCeEEEccceecC-------C-CCCCcccccccceeeeeecCCH--HHHHHHHHHH
Confidence 67888999999982 2 258899999999844 478887 5565554433
No 75
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=21.15 E-value=57 Score=38.83 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCC--Ccccccccccccc-cccccccCC---CCcccccccccccccccccCCC
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDP--TLLFANAGMNQYK-PIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp--tllftnAGm~qfk-~~flG~~~p---~~~~~~~~r~~~~QkCiR~gGk 134 (972)
+.|.++|-+||.++|-..|.+-=+++.+++ +-||-- ..|. +.||.+..- .--...+.|+-+..+++|+
T Consensus 138 s~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v---~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRA--- 211 (435)
T COG0017 138 SSILRAIREFFYENGFTEVHTPIITASATEGGGELFKV---DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRA--- 211 (435)
T ss_pred HHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEE---eecCcceEEecCHHHHHHHHHHHhCceEEecCceec---
Confidence 477889999999999999987666664332 233332 2332 255554421 0001126799999999999
Q ss_pred CCCCCCCCCCCCcchhhhhc-ccccccc
Q 002074 135 HNDLDDVGKDTYHHTFFEML-GNWSFGD 161 (972)
Q Consensus 135 hnDl~~VG~t~rHhTfFEMl-GnfSfgd 161 (972)
|+ -.|.||++=|-|+ -.-+|-|
T Consensus 212 ----E~-s~T~RHL~EF~~ld~Emaf~~ 234 (435)
T COG0017 212 ----EK-SNTRRHLSEFWMLDPEMAFAD 234 (435)
T ss_pred ----CC-CCCcchhhhHheecceeccCc
Confidence 22 2389999988776 2334444
No 76
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=20.48 E-value=54 Score=39.37 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=56.8
Q ss_pred ccccccCCCCCCcCCChHHHHHHHHHhhhhCCCeeecCCCcccC-CCCCcccccccccccccccccccCCCCcccccccc
Q 002074 44 AVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPV-NDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRA 122 (972)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~-~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~ 122 (972)
-.---||.--...|.+.+|--+.|+++- |-......+|.|. +|++ .++| + +.+-
T Consensus 227 ~~~~epGDvl~l~P~N~de~V~~Fie~~---gl~~~~~~~l~~~s~~~~---------~~~~---~----------~~~p 281 (574)
T KOG1159|consen 227 YEEFEPGDVLSLLPSNSDETVQRFIEYL---GLDEDQLKPLKISSNDRS---------SPLP---L----------LPNP 281 (574)
T ss_pred cccccCCCEEEEecCCchHHHHHHHHHc---CCChhhccccccccCccc---------cccc---c----------cCCc
Confidence 3445677777778889999999999886 5555566666653 3322 3444 1 1122
Q ss_pred cccccccccCCCCCCCCCCCCCCCcchhhhhcccccccc
Q 002074 123 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD 161 (972)
Q Consensus 123 ~~~QkCiR~gGkhnDl~~VG~t~rHhTfFEMlGnfSfgd 161 (972)
++.--|+-- |-|+..|= |-+|||||+.||-..
T Consensus 282 ~sl~~~lk~---~~D~~SvP----rrsFFe~l~~~s~~~ 313 (574)
T KOG1159|consen 282 LSLLNLLKY---VLDFNSVP----RRSFFEMLAHFSTDE 313 (574)
T ss_pred hhHHHHHHH---hcccccCc----chHHHHHHHHHccCh
Confidence 444455554 57888753 679999999999873
No 77
>PLN02502 lysyl-tRNA synthetase
Probab=20.40 E-value=51 Score=40.61 Aligned_cols=86 Identities=15% Similarity=0.298 Sum_probs=49.4
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccc--------cccccccCCCC----ccccccccccccccc
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADPNT----QLSKLTRACNTQKCI 129 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk--------~~flG~~~p~~----~~~~~~r~~~~QkCi 129 (972)
.|-+.+=+||.++|-..|..=-+.+. . .+|+--+|+ +.||-.++--. -.+.+.|+-..-+|+
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~-~-----gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~F 307 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMI-A-----GGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQF 307 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeecc-C-----CCccccceeeecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCee
Confidence 44466778999999888843333331 0 122222332 23333322100 001256778888999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhccc-cccccc
Q 002074 130 RAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDY 162 (972)
Q Consensus 130 R~gGkhnDl~~VG~t~rHhTfFEMlGn-fSfgdY 162 (972)
|. |.++ .||..=|-||-- ++|.||
T Consensus 308 Rn-------E~~~--~rH~pEFtmlE~y~a~~d~ 332 (553)
T PLN02502 308 RN-------EGIS--TRHNPEFTTCEFYQAYADY 332 (553)
T ss_pred eC-------CCCC--CccccceeehhhhhhcCCH
Confidence 96 3333 499999999866 588887
No 78
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=20.16 E-value=52 Score=40.09 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhCCCeeecCCCccc--CCCCCccccccccccc-ccccccccCCC---C-cccccccccccccccccCCC
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVP--VNDPTLLFANAGMNQY-KPIFLGTADPN---T-QLSKLTRACNTQKCIRAGGK 134 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp--~~dptllftnAGm~qf-k~~flG~~~p~---~-~~~~~~r~~~~QkCiR~gGk 134 (972)
+|-+.+=+||.++|-..|..--|.| -....-.|+.- .+.| ++.||-.++.- - -.+.+.|+-..-+|+|..
T Consensus 189 ~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~-~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE-- 265 (505)
T PRK12445 189 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-- 265 (505)
T ss_pred HHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecc-cccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCC--
Confidence 4555666899999988885433322 11111112100 1112 12334332210 0 001256778889999972
Q ss_pred CCCCCCCCCCCCcchhhhhc-cccccccc
Q 002074 135 HNDLDDVGKDTYHHTFFEML-GNWSFGDY 162 (972)
Q Consensus 135 hnDl~~VG~t~rHhTfFEMl-GnfSfgdY 162 (972)
.+ |.||..=|-|| --++|.||
T Consensus 266 -----~~--~~rH~pEFTmlE~y~a~~d~ 287 (505)
T PRK12445 266 -----GI--SVRHNPEFTMMELYMAYADY 287 (505)
T ss_pred -----CC--CCCcCcccceeeeeeecCCH
Confidence 23 68999999998 44577787
No 79
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=20.08 E-value=53 Score=39.22 Aligned_cols=29 Identities=34% Similarity=0.372 Sum_probs=24.5
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf~ 316 (972)
++==.|||+|||++++-|.+|.=|+-+|.
T Consensus 401 p~~G~giGidRl~m~~~g~~~Irdv~~FP 429 (437)
T PRK05159 401 PHGGFGLGLERLTMKLLGLENIREAVLFP 429 (437)
T ss_pred CCCeeeEhHHHHHHHHcCCCchhEEeecc
Confidence 56778999999999999999888775554
No 80
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=20.05 E-value=1.5e+02 Score=36.49 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccc--------ccccc-----cccccccC-C-------CCcc--c
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK-----PIFLGTAD-P-------NTQL--S 117 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAG--------m~qfk-----~~flG~~~-p-------~~~~--~ 117 (972)
..|.+.+.+.|.+.|+..|-.-.+.+ +=+|..+| |..|. .+.|.... | .+.+ +
T Consensus 204 ~~i~~~~~~~~~~~G~~ev~tP~l~~----~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~ 279 (563)
T TIGR00418 204 NLLEDFVRQKQIKYGYMEVETPIMYD----LELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYR 279 (563)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccCC----HHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChH
Confidence 46667777778889999997666654 22666666 55553 23332221 1 0111 0
Q ss_pred cc-ccccccccccccCCCCCCCCC--CCCCCCcchhhhhcccccccc--ccHHH---HHHHHHHHcccccCCCCCceEE
Q 002074 118 KL-TRACNTQKCIRAGGKHNDLDD--VGKDTYHHTFFEMLGNWSFGD--YFKNE---AIEWAWELLTKVYRLPADRLYA 188 (972)
Q Consensus 118 ~~-~r~~~~QkCiR~gGkhnDl~~--VG~t~rHhTfFEMlGnfSfgd--YfK~e---ai~~awe~lt~~lgl~~~rL~v 188 (972)
.+ -|+.-..+|.|- .... -|. .|-+. |.|.|-++||. .-..| .|.++++++ +.|||+.-++-+
T Consensus 280 ~lP~rl~~~g~~fR~-----E~~g~~~Gl-~R~re-F~q~~~~~~~~~~~~~~e~~~~i~~~~~~~-~~lgl~~~~~~l 350 (563)
T TIGR00418 280 DLPLRIAELGYSHRY-----EQSGELHGL-MRVRG-FTQDDAHIFCTEDQIKEEFKNQFRLIQKVY-SDFGFSFDKYEL 350 (563)
T ss_pred HCCceeeEeccccCC-----CCCcCCcCc-ccccc-eEEeeeEEEcCHHHHHHHHHHHHHHHHHHH-HHcCCCeEEEEE
Confidence 11 377888899995 3110 122 14444 78999999974 33334 889999999 569998655543
Done!