Query 002074
Match_columns 972
No_of_seqs 314 out of 2057
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 5E-198 2E-202 1756.2 49.5 639 50-799 49-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 3E-185 1E-189 1646.6 46.7 625 53-799 55-738 (739)
3 3hy0_A Alanyl-tRNA synthetase; 100.0 2E-174 7E-179 1451.1 28.6 424 58-506 2-438 (441)
4 1yfs_A Alanyl-tRNA synthetase; 100.0 6E-174 2E-178 1455.3 24.9 423 58-508 3-430 (465)
5 3kew_A DHHA1 domain protein; s 100.0 3.1E-55 1.1E-59 469.0 24.7 224 540-804 11-234 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 3.2E-50 1.1E-54 423.9 18.1 200 540-796 13-214 (216)
7 1v4p_A Alanyl-tRNA synthetase; 99.9 6.2E-26 2.1E-30 227.3 17.3 144 640-799 4-152 (157)
8 1tke_A Threonyl-tRNA synthetas 99.9 2.6E-24 8.9E-29 227.8 18.0 167 605-797 39-222 (224)
9 1nyr_A Threonyl-tRNA synthetas 99.9 5.3E-22 1.8E-26 240.0 16.0 172 606-801 42-225 (645)
10 1qf6_A THRRS, threonyl-tRNA sy 99.8 9.6E-21 3.3E-25 228.5 19.4 168 606-798 40-223 (642)
11 2zvf_A Alanyl-tRNA synthetase; 99.8 1.3E-18 4.3E-23 176.5 18.3 163 797-971 1-170 (171)
12 3g98_A Alanyl-tRNA synthetase; 99.6 6.9E-15 2.4E-19 139.2 11.7 105 859-968 6-110 (111)
13 3rf1_A Glycyl-tRNA synthetase 93.3 0.38 1.3E-05 51.2 10.5 183 50-312 17-201 (311)
14 1j5w_A Glycyl-tRNA synthetase 83.5 0.39 1.3E-05 50.8 1.9 175 58-312 13-189 (298)
15 2dq3_A Seryl-tRNA synthetase; 67.1 8.8 0.0003 43.9 7.4 110 60-182 175-316 (425)
16 4dh4_A MIF; trimer, isomerase; 66.2 2.9 9.8E-05 38.7 2.5 30 163-192 72-101 (114)
17 2zxr_A Single-stranded DNA spe 66.0 24 0.00081 42.7 11.1 85 872-971 338-422 (666)
18 3fwu_A Macrophage migration in 60.2 4.6 0.00016 38.7 2.8 29 164-192 94-122 (133)
19 2cja_A Seryl-tRNA synthetase; 59.8 27 0.00092 41.0 9.7 53 121-182 346-407 (522)
20 3djh_A Macrophage migration in 59.7 4.4 0.00015 37.5 2.5 29 164-192 72-100 (114)
21 3kan_A D-dopachrome tautomeras 58.3 4.8 0.00016 37.6 2.5 29 164-192 73-101 (117)
22 3b64_A Macrophage migration in 57.7 5.5 0.00019 36.5 2.8 30 163-192 72-101 (112)
23 3fwt_A Macrophage migration in 55.5 5.6 0.00019 38.0 2.5 29 164-192 94-122 (133)
24 3t5s_A Gilaa.00834.A, macropha 53.2 5.9 0.0002 38.0 2.3 29 164-192 94-122 (135)
25 2wkb_A Macrophage migration in 52.4 7.5 0.00026 36.5 2.8 30 163-192 72-101 (125)
26 2xcz_A Possible ATLS1-like lig 51.4 7.3 0.00025 35.8 2.5 29 164-192 73-101 (115)
27 1hfo_A Migration inhibitory fa 51.3 7.3 0.00025 35.6 2.5 29 164-192 72-100 (113)
28 1uiz_A MIF, macrophage migrati 49.6 8.1 0.00028 35.5 2.5 29 164-192 73-101 (115)
29 2os5_A Acemif; macrophage migr 49.6 8 0.00027 35.8 2.5 29 164-192 73-101 (119)
30 1nnh_A Asparaginyl-tRNA synthe 43.5 9.2 0.00031 41.5 2.2 108 61-179 19-141 (294)
31 2opa_A Probable tautomerase YW 41.1 14 0.00047 29.6 2.3 29 164-192 16-44 (61)
32 1otf_A 4-oxalocrotonate tautom 40.9 14 0.00047 29.6 2.3 30 163-192 15-44 (62)
33 3n4h_A Putative tautomerase; C 39.4 14 0.00049 35.5 2.6 53 164-216 78-135 (148)
34 3abf_A 4-oxalocrotonate tautom 38.7 18 0.00062 29.1 2.8 29 164-192 17-45 (64)
35 1gyx_A YDCE, B1461, hypothetic 36.4 39 0.0013 28.6 4.6 41 164-211 17-57 (76)
36 3m20_A 4-oxalocrotonate tautom 35.9 29 0.001 28.1 3.6 29 164-192 15-43 (62)
37 3m21_A Probable tautomerase HP 30.4 30 0.001 28.5 2.8 29 164-192 19-47 (67)
38 1mww_A Hypothetical protein HI 30.0 25 0.00086 32.8 2.5 29 164-192 75-103 (128)
39 1eov_A ASPRS, aspartyl-tRNA sy 28.6 42 0.0015 38.9 4.6 99 62-176 183-293 (487)
40 2aal_A Malonate semialdehyde d 27.1 30 0.001 32.4 2.5 29 164-192 81-109 (131)
41 3a5y_A GENX, putative lysyl-tR 27.0 23 0.00078 39.3 1.9 103 62-180 41-160 (345)
42 2i7u_A Four-alpha-helix bundle 26.7 9.5 0.00033 30.3 -0.9 15 925-939 17-31 (62)
43 3a5y_A GENX, putative lysyl-tR 26.2 65 0.0022 35.6 5.4 28 288-315 313-340 (345)
44 3mb2_A 4-oxalocrotonate tautom 26.1 35 0.0012 28.5 2.5 29 164-192 17-45 (72)
45 2x4k_A 4-oxalocrotonate tautom 25.2 36 0.0012 26.9 2.3 29 164-192 19-47 (63)
46 2atz_A H. pylori predicted cod 24.7 1.1E+02 0.0037 30.3 5.9 89 623-717 65-154 (180)
47 1wyd_A Hypothetical aspartyl-t 24.5 27 0.00093 39.9 2.0 101 61-176 138-247 (429)
48 3nem_A Aspartyl-tRNA synthetas 24.5 27 0.00091 40.1 1.9 102 62-175 142-258 (438)
49 3bju_A Lysyl-tRNA synthetase; 23.6 29 0.00098 40.7 2.0 100 62-176 181-298 (521)
50 3m4p_A Ehasnrs, asparaginyl-tR 23.5 28 0.00097 40.1 1.9 89 62-162 161-257 (456)
51 1n9w_A Aspartyl-tRNA synthetas 23.4 29 0.00099 39.6 1.9 102 61-177 129-240 (422)
52 3i7f_A Aspartyl-tRNA synthetas 23.0 29 0.001 40.9 1.9 87 62-162 249-347 (548)
53 1nnh_A Asparaginyl-tRNA synthe 22.8 74 0.0025 34.3 4.9 32 284-315 253-284 (294)
54 4ex5_A Lysine--tRNA ligase; st 22.7 30 0.001 40.6 1.9 99 62-175 209-325 (529)
55 1e1o_A Lysyl-tRNA synthetase, 22.5 31 0.0011 40.3 1.9 103 62-176 188-298 (504)
56 3a74_A Lysyl-tRNA synthetase; 22.4 31 0.0011 40.1 1.9 104 62-177 179-290 (493)
57 1apy_A Aspartylglucosaminidase 22.2 85 0.0029 31.1 4.7 51 165-240 107-160 (162)
58 2xgt_A Asparaginyl-tRNA synthe 22.0 32 0.0011 39.4 1.9 28 288-315 399-426 (435)
59 1x54_A Asparaginyl-tRNA synthe 21.9 32 0.0011 39.3 1.9 102 62-177 140-249 (434)
60 1eov_A ASPRS, aspartyl-tRNA sy 21.2 34 0.0012 39.8 1.9 28 288-315 451-478 (487)
61 3ry0_A Putative tautomerase; o 20.6 50 0.0017 26.8 2.3 29 164-192 16-44 (65)
62 4gyx_A Type III collagen fragm 20.0 37 0.0012 23.6 1.1 10 231-240 19-28 (31)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=5.3e-198 Score=1756.21 Aligned_cols=639 Identities=28% Similarity=0.453 Sum_probs=579.7
Q ss_pred CCCCCCcCCChHHHHHHHHHhhhhCC---CeeecCCCcccCCCCCcccccccccccccccc-cccCCCCccccccccccc
Q 002074 50 GADPQVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNT 125 (972)
Q Consensus 50 ~~~~~~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp~~dptllftnAGm~qfk~~fl-G~~~p~~~~~~~~r~~~~ 125 (972)
|..+..++||++|||++||+||++|| |++||||||||+||||||||||||+||||||+ |..+|+ ++|+|||
T Consensus 49 ~~~~~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~ 123 (752)
T 2zze_A 49 GKPGIPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVIS 123 (752)
T ss_dssp TSCSSSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEE
T ss_pred CCCcccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCcccc
Confidence 33356678999999999999999999 99999999999999999999999999999997 999886 5799999
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCC
Q 002074 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLA 200 (972)
Q Consensus 126 QkCiR~gGkhnDl~~VG~t~rHhTfFEMlGnfSfg-----dYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~ 200 (972)
|||||+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 124 QkCiR~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~---------- 187 (752)
T 2zze_A 124 QPSIRF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F---------- 187 (752)
T ss_dssp EEEECC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E----------
T ss_pred ccceec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e----------
Confidence 999996 7999999999999999999999999 999999999999999999999999994 2
Q ss_pred CcHHHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeecccc------
Q 002074 201 PDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF------ 274 (972)
Q Consensus 201 ~D~E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~------ 274 (972)
+||||+|| |||||||||||| + |||||||||||
T Consensus 188 -----------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~ 225 (752)
T 2zze_A 188 -----------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPEN 225 (752)
T ss_dssp -----------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTT
T ss_pred -----------------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeecccccc
Confidence 69999999 999999999997 1 99999999999
Q ss_pred -------ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCC
Q 002074 275 -------NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVG 336 (972)
Q Consensus 275 -------~~~~~g~l~~Lp~k~IDTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~-----------~y~~~~~ 336 (972)
|| ++|+|+|||+||||||||||||+|||||++||||| +|.|||++|++++|++ +|.|.++
T Consensus 226 ~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~ 303 (752)
T 2zze_A 226 APQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFD 303 (752)
T ss_dssp CCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCC
T ss_pred ccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCC
Confidence 88 69999999999999999999999999999999999 9999999999999985 2334444
Q ss_pred CCccccc------------------------cchhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhC
Q 002074 337 ADDADKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLK 392 (972)
Q Consensus 337 ~~~~~~~------------------------~~a~rviaDH~R~~~f~i~DGv~Psn~grgYvlRrilRRa~~~~~~~l~ 392 (972)
.++...+ +.++||||||+||++|||+||++|||+|||||||||||||+|+|+ +||
T Consensus 304 ~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~-~lg 382 (752)
T 2zze_A 304 IEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLR-ELG 382 (752)
T ss_dssp SSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHH-HTT
T ss_pred ccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHH-HhC
Confidence 2221111 468899999999999999999999999999999999999999995 799
Q ss_pred CCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChhhhhhhhccC
Q 002074 393 AQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTY 469 (972)
Q Consensus 393 ~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~~---~~~l~g~~af~LydTy 469 (972)
++.| |++|||.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ ++.|||++||+|||||
T Consensus 383 ~~~~-l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTy 461 (752)
T 2zze_A 383 LEVP-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESH 461 (752)
T ss_dssp CCCC-HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHH
T ss_pred CCcc-hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhcc
Confidence 9999 99999999999999999999999999999999999999999999999999998764 3579999999999999
Q ss_pred CCChHHHHHHHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcc--cceeee
Q 002074 470 GFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHK 546 (972)
Q Consensus 470 GfP~dlt~~ia~e~g~~vD~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~ 546 (972)
|||+|||++||+|+|++||++ +|+++|++||+++|++.. .. ..+ ...+ ...|+|+ +.+|+ |.++++
T Consensus 462 GfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~--~~---~~~---~~~~--~~~~~T~-~l~Y~~~yl~~~~ 530 (752)
T 2zze_A 462 GLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG--EE---LVD---FELL--KDLPDTR-RLYYEDPFMXEFD 530 (752)
T ss_dssp CCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC------------CCC---SSSS--SSSCCCE-EHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc--cc---chh---hHHh--ccCCCce-eecccCCccceEE
Confidence 999999999999999999999 899999999999886421 10 000 0011 1346674 77887 347899
Q ss_pred EEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEEEeecCCccCCCC
Q 002074 547 SVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVG 626 (972)
Q Consensus 547 a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G 626 (972)
|+|+++.. .+||||+|||||||||||+|+|+|..++..+.|.||++.+|.++|.+.. . +.+++|
T Consensus 531 a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vG 594 (752)
T 2zze_A 531 AXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEG 594 (752)
T ss_dssp EEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTT
T ss_pred EEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcC
Confidence 99999973 3699999999999999999999998777789999999999999999874 3 678899
Q ss_pred CEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 002074 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELD 706 (972)
Q Consensus 627 ~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~p 706 (972)
++|.++|||+||+.+|++|||+|||++||+++||.+++|.|+++.++++||||++..++|++++++||++||++|++|+|
T Consensus 595 d~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlp 674 (752)
T 2zze_A 595 MIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRX 674 (752)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCB
T ss_pred CeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred EEEEEeCHHHHHhhccchhhc--CCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEe
Q 002074 707 VFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEE 784 (972)
Q Consensus 707 V~~~~~~~eeA~~~~glr~~f--~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~ 784 (972)
|++.+++++||+++.++ ++| +++|++.||||+|| ++|+++||||||+|||+||.|+|++++
T Consensus 675 V~~~~~s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s 737 (752)
T 2zze_A 675 VTWEWLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTE 737 (752)
T ss_dssp EEEEEEEHHHHHHHHCG-GGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEE
T ss_pred cceeecCHHHHhhcchh-hhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEE
Confidence 99999999999998654 445 67888999999998 589999999999999999999999999
Q ss_pred eecCCeEEEEEEeCH
Q 002074 785 GIAKGIRRITAVTTG 799 (972)
Q Consensus 785 ~~~~Gv~RI~~vtG~ 799 (972)
++++|++||+|+||.
T Consensus 738 ~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 738 RIQDGVERIIFACGE 752 (752)
T ss_dssp EEETTEEEEEEEECC
T ss_pred EEcCCEEEEEEEeCC
Confidence 999999999999994
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.9e-185 Score=1646.56 Aligned_cols=625 Identities=28% Similarity=0.458 Sum_probs=570.5
Q ss_pred CCCcCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccc-cccCCCCccccccccccccccccc
Q 002074 53 PQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRA 131 (972)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~fl-G~~~p~~~~~~~~r~~~~QkCiR~ 131 (972)
|..++|+++|||++||+||+++||+++|||||||+||||||||||||+||||||+ |..+|+ +.|+|++|||||+
T Consensus 55 ~~~~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~-----~~~~~~~Q~ciR~ 129 (739)
T 2ztg_A 55 VFKKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPP-----ANPLTISQPCIRL 129 (739)
T ss_dssp SSSSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCS-----SSSEEEEEEEECG
T ss_pred CcCCCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCC-----CCCcccccccccC
Confidence 4557899999999999999999999999999999999999999999999999997 998876 4799999999997
Q ss_pred CCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHH
Q 002074 132 GGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEAR 206 (972)
Q Consensus 132 gGkhnDl~~VG~t~rHhTfFEMlGnfSfg-----dYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~ 206 (972)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++|||||+||. +
T Consensus 130 ----~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~~~~~i~--~---------------- 186 (739)
T 2ztg_A 130 ----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGVKKEDIV--Y---------------- 186 (739)
T ss_dssp ----GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTCCGGGCE--E----------------
T ss_pred ----cccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-HHhCCCHHHee--e----------------
Confidence 7999999999999999999999999 999999999999999 88999999872 1
Q ss_pred HHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccc---
Q 002074 207 DIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK--- 283 (972)
Q Consensus 207 ~iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~--- 283 (972)
+||||+|| |||||||||||| | |||||+|||||||+++|+++
T Consensus 187 -----------------~dnfW~~g--Gp~Gpc~Ei~~d---g--------------~EiwnlVfmq~~r~~~g~~~~~~ 230 (739)
T 2ztg_A 187 -----------------KEEPWAGG--GNAGPCLEAIVG---G--------------LEVATLVFMNLEEHPEGDIEIKG 230 (739)
T ss_dssp -----------------EEEEEEET--TEEEEEEEEEET---T--------------EEEEEEEEEEEEECTTCCEEETT
T ss_pred -----------------ccCcccCC--CCCCCeeEEEEC---C--------------EEeeeeeeEEeeecCCCceeecC
Confidence 69999999 999999999997 2 99999999999999999998
Q ss_pred ----cCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCC-----------------CCCCCCCcccc
Q 002074 284 ----PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPY-----------------SGKVGADDADK 342 (972)
Q Consensus 284 ----~Lp~k~IDTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y-----------------~~~~~~~~~~~ 342 (972)
|||+|+||||||||||+|+|||++||||| +|.|||++|++++|++ | .|+++.++.+.
T Consensus 231 ~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~-y~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 308 (739)
T 2ztg_A 231 ARYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVS-FNREDERVRRIVAESSKLAGIMGELRGER 308 (739)
T ss_dssp EEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCS-SCTTCHHHHHHHHHHHHHHHHHTTCCTHH
T ss_pred ccccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCC-ccccccchhhhhhhhhhcccccCcccchh
Confidence 99999999999999999999999999999 9999999999999984 4 23333222121
Q ss_pred cc------------------------chhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchh
Q 002074 343 VD------------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFF 398 (972)
Q Consensus 343 ~~------------------------~a~rviaDH~R~~~f~i~DGv~Psn~grgYvlRrilRRa~~~~~~~l~~~~~~l 398 (972)
++ .++||||||+||++|||+||++|||+|||||||||||||+|+| ++||++.| |
T Consensus 309 i~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l 386 (739)
T 2ztg_A 309 LNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLD-L 386 (739)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-H
T ss_pred HHHHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-H
Confidence 11 4788999999999999999999999999999999999999999 57999999 9
Q ss_pred hhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhhhhccCCCChHHHHH
Q 002074 399 NGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQL 478 (972)
Q Consensus 399 ~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~~~~~l~g~~af~LydTyGfP~dlt~~ 478 (972)
++|||.|++.|++ ||.++++.|++||+.||++|.+||++|+++|+++++++++ |||++||+||||||||+|||++
T Consensus 387 ~~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~--l~g~~af~LyDTyGfP~dlt~~ 461 (739)
T 2ztg_A 387 YDLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKK--LEKDDLIELYDSHGIPVELAVG 461 (739)
T ss_dssp HHHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSB--CCHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCCCHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999987633 9999999999999999999999
Q ss_pred HHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeC
Q 002074 479 MAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTG 555 (972)
Q Consensus 479 ia~e~g~~vD~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~a~Vl~i~~~ 555 (972)
||+|+|++||++ +|+++|++||++||++. . . + + .+. ...|+|+ +.+|+ |..+++|+|+++..
T Consensus 462 ia~e~g~~vd~~~~F~~~m~~q~~~a~~~~--~-~-----~---~-~~~-~~~~~T~-~l~Y~~~y~~~~~a~Vl~i~~- 526 (739)
T 2ztg_A 462 IAAEKGAEVEMPKDIYAELAKRHSKAEKVQ--E-K-----K---I-TLQ-NEYPATE-KLYYDDPTLLEFEAEVIGVEG- 526 (739)
T ss_dssp HHHHTTCBCCCCTTHHHHHHHTTSBCCCCC--C-C-----C---C-CCS-SCCCCCE-ECTTTCTTCCEEEEEEEEEET-
T ss_pred HHHHcCCeeCCcccHHHHHHHHHHHHhhcc--c-c-----c---h-hhh-ccCCCce-eecccCCcccEEEEEEEEEEc-
Confidence 999999999999 89999999999887631 1 0 1 0 111 1246674 88887 34789999999973
Q ss_pred CeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEEEeecCCccC-CCCCEEEEEEc
Q 002074 556 SEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRF-SVGEEVICKVD 634 (972)
Q Consensus 556 ~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l-~~G~~V~~~VD 634 (972)
.+||||+|||||||||||+|+|+|..++..+.|.||++.+|.++|.+. +.+ ++|++|.++||
T Consensus 527 ------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~-----~~~~~~Gd~V~~~VD 589 (739)
T 2ztg_A 527 ------------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK-----GAKPEVGTKVKGVID 589 (739)
T ss_dssp ------------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECC-----SSCCCTTCEEEEEEC
T ss_pred ------------CEEEEeCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEc-----ccCCCCCCEEEEEEc
Confidence 369999999999999999999999877778999999999999999875 344 68999999999
Q ss_pred hhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCH
Q 002074 635 YDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATL 714 (972)
Q Consensus 635 ~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~ 714 (972)
|+||+.+|++|||+|||++||+++||.+++|.||+++++++||||++..++|++++++||++||++|++|+||++.++++
T Consensus 590 ~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~ 669 (739)
T 2ztg_A 590 SDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDR 669 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHhhccchhhc-CCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEeeecCCeEEE
Q 002074 715 AEAKCINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 793 (972)
Q Consensus 715 eeA~~~~glr~~f-~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI 793 (972)
+||+++.+++.+. +++|++.||||+|| + ++++||||||+|||+||.|+|++++++++|++||
T Consensus 670 eEA~~~~~l~L~~~~~~~~d~VRVV~IG----------------d-~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRI 732 (739)
T 2ztg_A 670 IEAERKFGFRLYQGGVPPGRKIRVVQVG----------------D-DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRF 732 (739)
T ss_dssp HHHHHHHCGGGGTTCCCCSSEEEEEEET----------------T-EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEE
T ss_pred HHHHHhCCHhhhcCCCCCCCeEEEEEEC----------------C-eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEE
Confidence 9999986655443 56777899999998 4 8999999999999999999999999999999999
Q ss_pred EEEeCH
Q 002074 794 TAVTTG 799 (972)
Q Consensus 794 ~~vtG~ 799 (972)
+|+||.
T Consensus 733 eavtG~ 738 (739)
T 2ztg_A 733 EFAAGE 738 (739)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999996
No 3
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=2.1e-174 Score=1451.09 Aligned_cols=424 Identities=50% Similarity=0.891 Sum_probs=404.7
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 002074 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (972)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (972)
++++|||++||+||++|||++||||||||+||||||||||||+||||||+|.++|+ ++|||||||||||||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnD 76 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHND 76 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCC-----CCCccccccceecCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999875 6899999999999999999
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcc--cccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--C
Q 002074 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (972)
Q Consensus 138 l~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt--~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~--~ 213 (972)
|||||+|+|||||||||||||||||||+|||+||||||| ++|||||+|||||||++ |+||++||++. |
T Consensus 77 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~--------D~Ea~~iW~~~~Gv 148 (441)
T 3hy0_A 77 LENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYES--------DDEAYEIWEKEVGI 148 (441)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETT--------CHHHHHHHHHTTCC
T ss_pred HHhhCCCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCC--------CHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999 67999999999999985 89999999995 9
Q ss_pred CCCCcccCC-------CCCCcccCCCCCCCcCceeEEeecCCCCC--CCCCCCCCCCCeEEEeeeeccccccCCCCcccc
Q 002074 214 PASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284 (972)
Q Consensus 214 ~~~~I~~~~-------~~dNfW~mG~~GpCGPcsEi~yd~~~~~~--~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~ 284 (972)
|++||+++| .+||||+||+||||||||||||||++... ..+.+++||+|||||||||||||||+++|+|.|
T Consensus 149 p~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p 228 (441)
T 3hy0_A 149 PRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP 228 (441)
T ss_dssp CGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred CHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCcccc
Confidence 999999999 89999999999999999999999974321 123468899999999999999999999999999
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhheeeeecCC
Q 002074 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADG 364 (972)
Q Consensus 285 Lp~k~IDTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~f~i~DG 364 (972)
||+||||||||||||+|||||++||||||+|.|||++|++++|.+ | ..++|+||||||+||++|||+||
T Consensus 229 Lp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~----------~~~~s~rvIADH~R~~~f~iaDG 297 (441)
T 3hy0_A 229 LPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-D----------LSNKSLRVIADHIRSCAFLIADG 297 (441)
T ss_dssp EEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-C----------TTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCC-c----------cccceeEEecchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999974 3 13679999999999999999999
Q ss_pred CccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002074 365 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEK 444 (972)
Q Consensus 365 v~Psn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~ 444 (972)
++|||+|||||||||||||+|+|+ +||++.|||++|||.|++.|++.||||.++++.|++||+.||++|.+||++|+++
T Consensus 298 v~PsNeGrGYVLRRilRRAvr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~ 376 (441)
T 3hy0_A 298 VMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLAL 376 (441)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHH-HHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhh
Q 002074 445 FKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506 (972)
Q Consensus 445 l~~~i~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~ 506 (972)
|++++++.+++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++
T Consensus 377 l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 377 LDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp HHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhc
Confidence 99999876556899999999999999999999999999999999999999999999999975
No 4
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=6e-174 Score=1455.30 Aligned_cols=423 Identities=48% Similarity=0.895 Sum_probs=404.8
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 002074 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (972)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (972)
|+++|||++||+||++|||++||||||||+||||||||||||+||||||+|.++|+ ++||||||||||+||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hND 77 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHND 77 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCC-----CCceeccccccccCCCccc
Confidence 89999999999999999999999999999999999999999999999999999886 6899999999999999999
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CCC
Q 002074 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPA 215 (972)
Q Consensus 138 l~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~--~~~ 215 (972)
|||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||++. ||+
T Consensus 78 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~--------D~Ea~~iW~~~~G~p~ 149 (465)
T 1yfs_A 78 LEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPS 149 (465)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCG
T ss_pred HhhcCCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCC--------CHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999985 99999999996 999
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCch
Q 002074 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (972)
Q Consensus 216 ~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGmG 295 (972)
+||+++|.+||||+||+|||||||||||||++++++ ++||||||||||||||||++||+|.|||+||||||||
T Consensus 150 ~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmG 222 (465)
T 1yfs_A 150 ERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMG 222 (465)
T ss_dssp GGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred HHeeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCC-------CCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcC
Confidence 999999999999999999999999999999987654 2789999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhheeeeecCCCccCCCCcchH
Q 002074 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (972)
Q Consensus 296 LERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~f~i~DGv~Psn~grgYv 375 (972)
||||+|||||++||||||+|.|||++|++++|++ |.. + +..|+|+||||||+||++|||+||++|||+|||||
T Consensus 223 LERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~~----~--~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYV 295 (465)
T 1yfs_A 223 LERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGE----K--FETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 (465)
T ss_dssp HHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TTS----C--HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHH
T ss_pred HHHHHHHHcCCCccchhhhHHHHHHHHHHHhCCC-CCC----C--cccceeEEEEcchhhhhhhhhccccccCCCCcchH
Confidence 9999999999999999999999999999999984 742 1 44678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 002074 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-- 453 (972)
Q Consensus 376 lRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~~-- 453 (972)
||||||||+|+|+ +||++.|||++|||.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++
T Consensus 296 LRRilRRavr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~ 374 (465)
T 1yfs_A 296 IRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEE 374 (465)
T ss_dssp HHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999995 6999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -CCCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhh
Q 002074 454 -GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQN 508 (972)
Q Consensus 454 -~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~~~ 508 (972)
++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 375 ~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~ 430 (465)
T 1yfs_A 375 GRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFK 430 (465)
T ss_dssp TCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC--
T ss_pred CCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhh
Confidence 2369999999999999999999999999999999999999999999999998754
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=3.1e-55 Score=469.03 Aligned_cols=224 Identities=23% Similarity=0.280 Sum_probs=205.7
Q ss_pred ccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEEEeecC
Q 002074 540 IWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEG 619 (972)
Q Consensus 540 ~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~ 619 (972)
.|..+++|+|+++..+ ++.++|+||+|||||||||||+|+|+|. .+.|.+|++.+|.++|+++
T Consensus 11 ~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~~~V~~v~~~~g~i~H~~~---- 73 (241)
T 3kew_A 11 QYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----GIKVLDVYEEEGKVYHVLE---- 73 (241)
T ss_dssp TTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----TEEEEEEEEETTEEEEEES----
T ss_pred cccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----eEEEEEEEEeCCEEEEEEC----
Confidence 3678999999999863 3468899999999999999999999993 5899999999999999985
Q ss_pred CccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Q 002074 620 AGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNE 699 (972)
Q Consensus 620 ~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe 699 (972)
+++++|++|.+.|||+||+++|++|||+|||++||+++||.+ +.|+++.++++||||+ +++|++++.+||++||+
T Consensus 74 -~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~~IE~~vn~ 148 (241)
T 3kew_A 74 -KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIREAEKEANR 148 (241)
T ss_dssp -SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHHHHHHHHHH
T ss_pred -CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999987 6999999999999999 78999999999999999
Q ss_pred HHHcCCCEEEEEeCHHHHHhhccchhhcCCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEE
Q 002074 700 QIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFA 779 (972)
Q Consensus 700 ~I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fk 779 (972)
+|++|+||++.+++++||+++ +++++ +++|++.||||+|| ++|.++||||||+|||+||.|+
T Consensus 149 ~I~~~~pV~~~~~~~~eA~~~-~~~~~-~e~~~~~VRvv~ig----------------~~~~~~CgGtHV~~TgeIg~fk 210 (241)
T 3kew_A 149 LIFENLEVKSYAPSKKELKKV-KTRRA-LPKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQVIK 210 (241)
T ss_dssp HHHHTCBEEEECCCTTTTTTC-CCSSC-CCCCSSCCCEEEET----------------TTEEEECCSCCCSBSGGGCCEE
T ss_pred HHHcCCCEEEEEcCHHHHHhc-Chhhc-CCccCCcEEEEEEC----------------CeEEEcCCCCCcCCHhhcCCEE
Confidence 999999999999999999997 57775 67799999999998 5899999999999999999999
Q ss_pred EEeEeeecCCeEEEEEEeCHHHHHH
Q 002074 780 LLSEEGIAKGIRRITAVTTGLAYKA 804 (972)
Q Consensus 780 I~~~~~~~~Gv~RI~~vtG~~A~~~ 804 (972)
|+++++++ |.+||+|+||.+|++.
T Consensus 211 I~~~~~~~-~~~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 211 IRRWEKHK-NATRIEYVAGNRAVSE 234 (241)
T ss_dssp EEEEEEET-TEEEEEEEEGGGGC--
T ss_pred EEEEeccC-CcEEEEEEECHHHHhc
Confidence 99999975 5579999999999863
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=3.2e-50 Score=423.93 Aligned_cols=200 Identities=30% Similarity=0.396 Sum_probs=182.9
Q ss_pred ccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEE-CCEEEEEEEeec
Q 002074 540 IWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSLTE 618 (972)
Q Consensus 540 ~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i~H~~~~~~ 618 (972)
.|..+++|+|+++. + + +|+||+|||||||||||+|+|+|. + ++|.+|++. +|.++|++.. .
T Consensus 13 ~y~~~~~a~V~~~~-~----------~--~vvld~T~Fype~GGQ~~D~G~i~---~-~~V~~v~~~~~~~i~H~~~~-~ 74 (216)
T 2e1b_A 13 AYLKEAKGRVLEIR-D----------N--AILLDQTIFYPTGGGQPHDRGTIN---G-VEVLDVYKDEEGNVWHVVKE-P 74 (216)
T ss_dssp TTCCEEEECBCCCC-S----------S--CCCBSCCCSCCCCTTCCCCCEEET---T-EEEEEEECCTTCCCEEEESC-G
T ss_pred cccceeeEEEEEEe-C----------C--EEEEeCCCccCCCCCCCCCEEEEc---c-EEEEEEEECcCCEEEEEEcc-C
Confidence 36789999999882 1 1 599999999999999999999995 2 999999997 9999999863 3
Q ss_pred CCccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCc-eecccccccCCceEEEeeCCCCCCHHHHHHHHHHH
Q 002074 619 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH-VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIV 697 (972)
Q Consensus 619 ~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~-v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~v 697 (972)
+++++|++|.+.|||+||+.+|++|||+|||++||+++||.+ +.+.|++++++++||||+++++++++ +++||++|
T Consensus 75 --~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~v 151 (216)
T 2e1b_A 75 --EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLF 151 (216)
T ss_dssp --GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHH
T ss_pred --CCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHHHH
Confidence 578999999999999999999999999999999999999983 44679999999999999998889987 99999999
Q ss_pred HHHHHcCCCEEEEEeCHHHHHhhccchhhcCCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCccccccccccc
Q 002074 698 NEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (972)
Q Consensus 698 Ne~I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~ 777 (972)
|++|++|+||.+.++++ ||||+|| ++|.++||||||+|||+||.
T Consensus 152 n~~I~~~~pv~~~~~~~--------------------vRvv~ig----------------~~~~~~CgGtHV~~TgeIg~ 195 (216)
T 2e1b_A 152 NKYVDEGGEVKIWWEGD--------------------RRYTQIR----------------DFEVIPCGGTHVKDIKEIGH 195 (216)
T ss_dssp HHHHHHCCBEEEEESSS--------------------CEEEEET----------------TSCEECCCSCCCSBGGGTCC
T ss_pred HHHHhcCCCEEEEEcCC--------------------EEEEEEC----------------CEEEECCCCCCcccHhhCce
Confidence 99999999999987764 8999998 58999999999999999999
Q ss_pred EEEEeEeeecCCeEEEEEE
Q 002074 778 FALLSEEGIAKGIRRITAV 796 (972)
Q Consensus 778 fkI~~~~~~~~Gv~RI~~v 796 (972)
|+|++++++++|+|||+|.
T Consensus 196 fkI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 196 IKKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeEEcCCEEEEEEE
Confidence 9999999999999999986
No 7
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.94 E-value=6.2e-26 Score=227.33 Aligned_cols=144 Identities=22% Similarity=0.192 Sum_probs=119.3
Q ss_pred hHhhhhhHHHHHHHHHHHHhCCceecccc-cccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Q 002074 640 LIAPNHTCTHMLNFALREVLGDHVDQKGS-VVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (972)
Q Consensus 640 ~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs-~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~ 718 (972)
..|++|||+|||++|++++||.++.+.++ .+.++++|+||++..++|++++.+||+.||++|++|+||++.+++++||.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 46999999999999999999955545544 56666788888876789999999999999999999999999999999999
Q ss_pred hhccchhhcCCcCC---CCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEee-ecCCeEEEE
Q 002074 719 CINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG-IAKGIRRIT 794 (972)
Q Consensus 719 ~~~glr~~f~e~y~---~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~-~~~Gv~RI~ 794 (972)
++++...+..+.+| +.||||+|| ++|.++||||||+|||+||.|+|++.++ .+++..||+
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig----------------~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~ 147 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIH 147 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEET----------------TTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEE
T ss_pred HhhCccccccccCCCCCCeEEEEEEC----------------CeeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEE
Confidence 98664322112234 369999998 5899999999999999999999999986 345667999
Q ss_pred EEeCH
Q 002074 795 AVTTG 799 (972)
Q Consensus 795 ~vtG~ 799 (972)
|..+.
T Consensus 148 ~~v~~ 152 (157)
T 1v4p_A 148 FELLE 152 (157)
T ss_dssp EEEC-
T ss_pred EEEee
Confidence 98774
No 8
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.92 E-value=2.6e-24 Score=227.80 Aligned_cols=167 Identities=19% Similarity=0.326 Sum_probs=135.9
Q ss_pred EECCEEEEEEEeecCCccCCCCCEEEEEEchhhhh-hHhhhhhHHHHHHHHHHHHhCC-ceecccccccCCceEEEeeCC
Q 002074 605 IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRK-LIAPNHTCTHMLNFALREVLGD-HVDQKGSVVLPEKLRFDFSHG 682 (972)
Q Consensus 605 ~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~-~~m~~HTAtHLLsaAL~~vlG~-~v~q~Gs~v~~d~~r~Df~~~ 682 (972)
+.+|.+++. . .++..|+.|+ .|+++.+. ..|++|||+|||++|++++||. ++ ..| +..++++||||++.
T Consensus 39 kvNg~l~dL----~--~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~-~~g-~~~~~g~y~d~~~~ 109 (224)
T 1tke_A 39 RVNGELVDA----C--DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKM-AIG-PVIDNGFYYDVDLD 109 (224)
T ss_dssp EETTEEEET----T--CCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEE-CCC-CEETTEEEEEEECS
T ss_pred EECCEEecc----c--eEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEE-EEC-CccCCeEEEEEeCC
Confidence 347887763 1 4677788777 47887664 7899999999999999999974 44 346 45588999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccc------hhhcCC-c-CCCCeEEEEECCcccccccCCCCc
Q 002074 683 KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGE-V-YPDPVRVVAIGRKVEDLLADPENK 754 (972)
Q Consensus 683 ~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~gl------r~~f~e-~-y~~~VRVV~Ig~~~~~~l~~~~~~ 754 (972)
.++|++++.+||++||++|++|+||+..+++++||.++... ..++.+ . +.+.|||+++|
T Consensus 110 ~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g------------- 176 (224)
T 1tke_A 110 RTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE------------- 176 (224)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEET-------------
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeC-------------
Confidence 89999999999999999999999999999999999986421 223332 3 55789999998
Q ss_pred cccceeeeeccCcccccccccccEEEEeEeee-------cCCeEEEEEEe
Q 002074 755 EWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVT 797 (972)
Q Consensus 755 ~~~~~d~elCgGTHV~nTgeIg~fkI~~~~~~-------~~Gv~RI~~vt 797 (972)
++ .++||||||+|||+||.|+|++.++- ++-..||+.++
T Consensus 177 ---~~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a 222 (224)
T 1tke_A 177 ---EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (224)
T ss_dssp ---TE-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred ---CE-EEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEec
Confidence 34 68999999999999999999998762 34478999876
No 9
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.87 E-value=5.3e-22 Score=239.98 Aligned_cols=172 Identities=18% Similarity=0.324 Sum_probs=139.5
Q ss_pred ECCEEEEEEEeecCCccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCC
Q 002074 606 YGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPV 685 (972)
Q Consensus 606 ~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~l 685 (972)
.+|.+++.. .++..+.+|...-..+.+-..+++|||+|||++|++++||.+..+.|+.+ ++++||||++..++
T Consensus 42 vng~~~dl~------~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~ 114 (645)
T 1nyr_A 42 FNGQLVDLT------KPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNI 114 (645)
T ss_dssp ETTEEECTT------SCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCC
T ss_pred ECCEEEeCC------cccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCC
Confidence 477766531 45666666666444555668899999999999999999998888999987 89999999988899
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccch----hhcCCcC-CCCeEEEEECCcccccccCCCCcccccee
Q 002074 686 DPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLR----AVFGEVY-PDPVRVVAIGRKVEDLLADPENKEWLSIS 760 (972)
Q Consensus 686 t~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~glr----~~f~e~y-~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d 760 (972)
|++++.+||+.||++|++|+||++.+++++||.++++-. .+..... .+.||||+|| ++
T Consensus 115 t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g----------------~~- 177 (645)
T 1nyr_A 115 SSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQG----------------DF- 177 (645)
T ss_dssp CSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEET----------------TE-
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEEC----------------CE-
Confidence 999999999999999999999999999999999875310 0111111 1479999998 45
Q ss_pred eeeccCcccccccccccEEEEeEee-------ecCCeEEEEEEeCHHH
Q 002074 761 AELCGGTHLSNTREAEAFALLSEEG-------IAKGIRRITAVTTGLA 801 (972)
Q Consensus 761 ~elCgGTHV~nTgeIg~fkI~~~~~-------~~~Gv~RI~~vtG~~A 801 (972)
.++||||||+|||+||.|+|++.++ ..+...||+.++....
T Consensus 178 ~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~ 225 (645)
T 1nyr_A 178 TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDK 225 (645)
T ss_dssp EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSH
T ss_pred EEecCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCH
Confidence 7899999999999999999999973 4566889999987543
No 10
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.85 E-value=9.6e-21 Score=228.53 Aligned_cols=168 Identities=18% Similarity=0.294 Sum_probs=133.6
Q ss_pred ECCEEEEEEEeecCCccCCCCCEEEEEEchh-hhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCC
Q 002074 606 YGGFVIHIGSLTEGAGRFSVGEEVICKVDYD-RRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKP 684 (972)
Q Consensus 606 ~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~-rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~ 684 (972)
.+|.+++.. .++..+.+|. -|+++ .+-..+++|||+|||++|++++||....+.|+.+. +++||||++..+
T Consensus 40 vng~~~dl~------~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~~ 111 (642)
T 1qf6_A 40 VNGELVDAC------DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRT 111 (642)
T ss_dssp ETTEEEETT------SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSSC
T ss_pred ECCEEeccc------cccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCCCC
Confidence 477777632 4566555555 45555 56678999999999999999999764448898775 889999999889
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccc------hhhc-CCcCC-CCeEEEEECCcccccccCCCCccc
Q 002074 685 VDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVF-GEVYP-DPVRVVAIGRKVEDLLADPENKEW 756 (972)
Q Consensus 685 lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~gl------r~~f-~e~y~-~~VRVV~Ig~~~~~~l~~~~~~~~ 756 (972)
+|++++.+||+.||++|++|+||+..+++++||+++... ..+. ++.++ +.||+|++|
T Consensus 112 ~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g--------------- 176 (642)
T 1qf6_A 112 LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE--------------- 176 (642)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEET---------------
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEEC---------------
Confidence 999999999999999999999999999999999987421 1111 22222 479999998
Q ss_pred cceeeeeccCcccccccccccEEEEeEee---e----cCCeEEEEEEeC
Q 002074 757 LSISAELCGGTHLSNTREAEAFALLSEEG---I----AKGIRRITAVTT 798 (972)
Q Consensus 757 ~~~d~elCgGTHV~nTgeIg~fkI~~~~~---~----~~Gv~RI~~vtG 798 (972)
++ .++||||||+|||+||.|+|++.++ . ..-+.||+-++-
T Consensus 177 -~~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~ 223 (642)
T 1qf6_A 177 -EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAW 223 (642)
T ss_dssp -TE-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEEC
T ss_pred -CE-EEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeecccc
Confidence 34 6899999999999999999999987 2 233679998874
No 11
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=99.79 E-value=1.3e-18 Score=176.55 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=133.5
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhhcccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcceEEEEe
Q 002074 797 TTGLAYKAFEAACSLEKEVDDASKIEGSLLEK------NQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRV 869 (972)
Q Consensus 797 tG~~A~~~~~~~~~~~~~l~~ll~~~~~~l~~------~~~k~~~ke~~~l~~~~a~~~~~~l~~~~~-~~g~~~vv~~~ 869 (972)
.|.+|+++++..++++++++.++++++++++. +++++++|++++++.+++...+.++..++. ..+.++++..+
T Consensus 1 ~G~~A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i~g~~~~~~~~ 80 (171)
T 2zvf_A 1 MGEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVAEVV 80 (171)
T ss_dssp -CGGGTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEEEEC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEeCCEEEEEEEe
Confidence 48999999999999999999999998777654 788888999999988888877777765543 35677777666
Q ss_pred cccCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCccCCCCCCCeeee
Q 002074 870 EVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQ 949 (972)
Q Consensus 870 ~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkGGgGk~~~AQG~ 949 (972)
+.|++.|+.+++.+++. +..+++++.. ++ +.++++++++ +++|++|++++++.+||||| |+|+||||+
T Consensus 81 --~~d~~~lr~~~~~l~~~-~~vv~l~~~~--~~-~~~v~~~~~~-----~~~a~~lvk~~~~~~gGkGG-Gkp~~AQgg 148 (171)
T 2zvf_A 81 --DADMQALQKLAERLAEK-GAVGCLMAKG--EG-KVFVVTFSGQ-----KYDARELLREIGRVAKGSGG-GRKDVAQGA 148 (171)
T ss_dssp --SCCHHHHHHHHHHHHHT-TEEEEEEEEC--SS-SEEEEEEESS-----SSCHHHHHHHHHHHHTEECC-BCSSEEEEE
T ss_pred --CCCHHHHHHHHHHHhcC-CCEEEEEEcC--CC-eEEEEEECCC-----CCCHHHHHHHHHHHcCCCCC-CcHHHcccC
Confidence 67999999999999887 4444444432 34 5566665542 59999999999999999999 999999999
Q ss_pred cCCcCCHHHHHHHHHHHHHhhh
Q 002074 950 GTDAAQVTPAMDLAAEFAAMKL 971 (972)
Q Consensus 950 g~~~~~l~~al~~~~~~l~~~L 971 (972)
|++++++++|++.+++++.+++
T Consensus 149 g~~~~~l~~al~~~~~~~~~~~ 170 (171)
T 2zvf_A 149 VQQLLDREEMLDVIFRFLSEHE 170 (171)
T ss_dssp ESSCCCHHHHHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999997654
No 12
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=99.58 E-value=6.9e-15 Score=139.15 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=90.6
Q ss_pred cCCcceEEEEecccCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCcc
Q 002074 859 SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRC 938 (972)
Q Consensus 859 ~~g~~~vv~~~~~~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkG 938 (972)
..+.++++..++ +.+++.||++++.++++....++++++. .++++.+++++++++ ..+ ++|++|++++++.+||||
T Consensus 6 i~g~~~~~~~~~-~~d~~~Lr~~~~~l~~~~~~~vvvl~~~-~~~kv~~v~~v~~~~-~~~-~~A~~lvk~v~~~~gGkG 81 (111)
T 3g98_A 6 VGDFTLHYGVFE-EVEPEELRNLADMLRQRTKKDVVFIASR-KGDKINFVIGVSKEI-SDK-VNAKEVIREVGKVLKGGG 81 (111)
T ss_dssp ETTEEEEEEEEE-SCCHHHHHHHHHHHTTSSSSEEEEEEEE-ETTEEEEEEEECGGG-TTT-SCHHHHHHHHHHHTTBCC
T ss_pred ECCEEEEEEEeC-CCCHHHHHHHHHHHHhhcCCcEEEEEEe-cCCcEEEEEEECHHH-hcc-CCHHHHHHHHHHHcCCCc
Confidence 357788888886 7899999999999988543466666554 357899999999887 555 999999999999999999
Q ss_pred CCCCCCCeeeecCCcCCHHHHHHHHHHHHH
Q 002074 939 GKGKGGLASGQGTDAAQVTPAMDLAAEFAA 968 (972)
Q Consensus 939 GgGk~~~AQG~g~~~~~l~~al~~~~~~l~ 968 (972)
| |||+||||+|++++++++|++.++++++
T Consensus 82 G-Gkp~~AQggg~~~~~l~~al~~~~~~l~ 110 (111)
T 3g98_A 82 G-GRADLAQGGGKAPDKFPEAVKLLKEILS 110 (111)
T ss_dssp E-ECSSEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred C-CcHHHeeecCCCHHHHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999875
No 13
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=93.32 E-value=0.38 Score=51.22 Aligned_cols=183 Identities=20% Similarity=0.260 Sum_probs=103.2
Q ss_pred CCCCCCcCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccc
Q 002074 50 GADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKC 128 (972)
Q Consensus 50 ~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~-flG~~~p~~~~~~~~r~~~~QkC 128 (972)
|.--+...|+-.+|--+--+|..++|+.++-++.+= .|--.|-|. ||..--|. | -+++-+|+|
T Consensus 17 ~~~~~~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E-----------vGAGT~hPaTfLRalGpe-P----w~~AYVqPs 80 (311)
T 3rf1_A 17 NLYFQSNAMTFSQMILNLQNYWQEQGCAIMQPYDMP-----------AGAGTFHPATFLRSLGKK-P----WAAAYVAPS 80 (311)
T ss_dssp CCCCGGGSCCHHHHHHHHHHHHHTTTCEECCCCSSC-----------CSSGGGSHHHHTTTSSSS-C----EEEEEEEEE
T ss_pred cceeccCcCcHHHHHHHHHHHHHHCCCEEECCcccc-----------ccCCCCCHHHHHHhcCCC-c----ceeeeeccC
Confidence 444556779999999999999999999998877642 234478885 55333332 1 378999999
Q ss_pred cccC-CCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 002074 129 IRAG-GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (972)
Q Consensus 129 iR~g-GkhnDl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~ 207 (972)
-|.. |+.-+=+| + -.||.=|..+=-=|-.+ ..+.=.+=| +.|||||.
T Consensus 81 RRP~DGRYGeNPN--R-Lq~yyQfQVilKPsP~n-----iQeLYL~SL-~alGId~~----------------------- 128 (311)
T 3rf1_A 81 RRPTDGRYGENPN--R-LGAYYQFQVLIKPSPDN-----IQELYLKSL-ENLGFDLK----------------------- 128 (311)
T ss_dssp ECGGGCCTTCCSS--C-CSEEEEEEEEEESCCTT-----HHHHHHHHH-HHTTCCGG-----------------------
T ss_pred CCCCCCCcCCCch--h-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCcc-----------------------
Confidence 9972 22212111 1 23444444332222221 011111111 23455543
Q ss_pred HHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCC
Q 002074 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (972)
Q Consensus 208 iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~ 287 (972)
+|=+|| -+|| |+-=--|--|-==|+--| | +||=- |+=|.+ ..| + ++..
T Consensus 129 --------~HDIRF-VEDn-WEsPTLGAWGLGWEVWld---G--------------MEVTQ--FTYFQQ-vGG-i-~c~p 176 (311)
T 3rf1_A 129 --------SHDIRF-VEDN-WESPSLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-I-AVDL 176 (311)
T ss_dssp --------GSCEEE-EECC-EEETTTTEEEEEEEEEET---T--------------EEEEE--EEEEEE-ETT-E-ECSS
T ss_pred --------ccCeeE-eccC-CCCCcccccccceEEEEc---C--------------eeEee--eeeeee-eCC-c-cccc
Confidence 233555 2455 542112444544455433 1 56542 333333 333 3 3444
Q ss_pred CccccCchHHHHHHHHhCCCCCccc
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDT 312 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydt 312 (972)
-.+.-=+||||||+.|||+.|+||.
T Consensus 177 v~~EITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 177 VSAEITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp CCEEEEEEHHHHHHHHTTCSSGGGS
T ss_pred cceeeehhHHHHHHHHhCCCeeeec
Confidence 5677789999999999999999986
No 14
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=83.46 E-value=0.39 Score=50.81 Aligned_cols=175 Identities=20% Similarity=0.296 Sum_probs=97.8
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-CCC
Q 002074 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKH 135 (972)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-Gkh 135 (972)
|--.+|--+--+|..++|+.++-++.+= .|--.|-|. ||..--|. | -+++-+|+|.|.. |+.
T Consensus 13 ~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E-----------vGAGT~~PaTfLRaLGpe-p----w~~AYVqPsRRP~DGRY 76 (298)
T 1j5w_A 13 MYLQDVIMKLNDFWASKGCLLEQPYDME-----------VGAGTFHPATFFGSLRKG-P----WKVAYVQPSRRPTDGRY 76 (298)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC-----------CSSGGGSHHHHTGGGCSS-C----EEEEEEEEEECCC----
T ss_pred HHHHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCC-c----ceeeeeccCCCCCCCCc
Confidence 5578899999999999999998877652 244578884 44322221 1 3789999999972 111
Q ss_pred CCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhCCC
Q 002074 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (972)
Q Consensus 136 nDl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~~~~ 215 (972)
-+ |--+ -.||.=|..+=-=|-.+ ..+.=.+=| +.|||||.
T Consensus 77 Ge--NPNR-Lq~y~QfQVilKPsP~n-----iQeLYL~SL-~alGid~~------------------------------- 116 (298)
T 1j5w_A 77 GE--NPNR-LQRYFQYQVIIKPSPEN-----SQELYLESL-EYLGINLK------------------------------- 116 (298)
T ss_dssp -C--CTTC-CSEEEEEEEEEESCCSS-----HHHHHHHHH-HHTTCCTT-------------------------------
T ss_pred CC--Cchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc-------------------------------
Confidence 11 1111 23444444432222222 000001111 23455543
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCch
Q 002074 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (972)
Q Consensus 216 ~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGmG 295 (972)
+|=+|| .+|| |+-=--|.-|-==|+--| | +||=- |+=|.+- .| + ++..-.+.-=+|
T Consensus 117 ~HDIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQ--FTYFQQv-GG-i-~c~pv~~EITYG 172 (298)
T 1j5w_A 117 EHDIRF-VEDN-WESPTLGAWGVGWEVWLD---G--------------MEITQ--FTYFQQI-GG-I-SLKDIPLEITYG 172 (298)
T ss_dssp TSCEEE-EEEC-CEEGGGTEEEEEEEEEET---T--------------EEEEE--EEEEEEB-TT-B-CCSSCCEEEEEE
T ss_pred cCCcee-eccC-CCCCccccccccceeeEc---c--------------eeeeh--hhhhhhc-CC-c-ccCccceeeccc
Confidence 344555 2566 542112555544565543 1 67653 3333332 33 3 455557777899
Q ss_pred HHHHHHHHhCCCCCccc
Q 002074 296 FERLTSILQNKMSNYDT 312 (972)
Q Consensus 296 LERl~~vlq~~~snydt 312 (972)
|||||+.|||+.|+||.
T Consensus 173 LERiamylQ~vd~vydl 189 (298)
T 1j5w_A 173 LERIAMYLQGVDNVYEV 189 (298)
T ss_dssp HHHHHHHHHTCSSGGGC
T ss_pred HHHHHHHHhCCCceecc
Confidence 99999999999999997
No 15
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=67.15 E-value=8.8 Score=43.87 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccc--------ccccc--ccccc-cc------------CCCCcc
Q 002074 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK--PIFLG-TA------------DPNTQL 116 (972)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAG--------m~qfk--~~flG-~~------------~p~~~~ 116 (972)
-..|.+.++++|.++|+..|-.-.+++.. +|..+| |..|. .++|- .. ....++
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~----l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPE----ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHH----HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHH----HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 34677788889999999999766666521 222222 22221 12221 11 000100
Q ss_pred cccccccccccccccCCCCCCCCCCCCCC----Ccchhhhhccccccccc-----cHHHHHHHHHHHcccccCCC
Q 002074 117 SKLTRACNTQKCIRAGGKHNDLDDVGKDT----YHHTFFEMLGNWSFGDY-----FKNEAIEWAWELLTKVYRLP 182 (972)
Q Consensus 117 ~~~~r~~~~QkCiR~gGkhnDl~~VG~t~----rHhTfFEMlGnfSfgdY-----fK~eai~~awe~lt~~lgl~ 182 (972)
-.|.+-.++|.|- ....-|++. |=|. |.|..-++|+.= .-+|.+.++++++. .||||
T Consensus 251 --Plrl~~~g~~FR~-----E~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~-~LGL~ 316 (425)
T 2dq3_A 251 --PIYLTAYTPCYRR-----EAGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQ-LLGLP 316 (425)
T ss_dssp --CEEEEEEEEEECC-----CCSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred --CeEEEEecCEecC-----CCCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHH-HCCCc
Confidence 1378888999994 443334331 3333 556677888732 23678999999996 49998
No 16
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=66.15 E-value=2.9 Score=38.68 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 163 fK~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
-|++-++-..++|.++||+||+|+||.+++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 367778888899999999999999999975
No 17
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=66.05 E-value=24 Score=42.66 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=57.0
Q ss_pred cCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCccCCCCCCCeeeecC
Q 002074 872 GLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGT 951 (972)
Q Consensus 872 ~~d~~~L~~~a~~l~~~~~~~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkGGgGk~~~AQG~g~ 951 (972)
+.-...+--++..+++..+.++++++. ++.+ +- ...++|+.+++..+...++ +|| |= .+|=|-.-
T Consensus 338 ~wh~GViGIVAsrl~e~~~rP~iv~a~----~kgS--aR------Si~g~nl~~~L~~~~~ll~-~gG-GH-~~AAG~si 402 (666)
T 2zxr_A 338 EGHPGVMGIVASRILEATLRPVFLVAQ----GKGT--VR------SLAPISAVEALRSAEDLLL-RYG-GH-KEAAGFAM 402 (666)
T ss_dssp TCCHHHHHHHHHHHHHHHCSCEEEEET----TEEE--EE------CCTTCCHHHHHHHTGGGCS-EEE-EC-SSEEEEEC
T ss_pred CcCcccHHHHHHHHHHHhCCCEEEEEC----CEEE--EE------CCCCccHHHHHHHHHhhCc-ccC-CC-hHHccccc
Confidence 445667777788888855666777763 2422 11 1137999999999887664 444 44 45655555
Q ss_pred CcCCHHHHHHHHHHHHHhhh
Q 002074 952 DAAQVTPAMDLAAEFAAMKL 971 (972)
Q Consensus 952 ~~~~l~~al~~~~~~l~~~L 971 (972)
..++++++.+.+.+.+.+.+
T Consensus 403 ~~~~l~~f~~~l~~~~~~~~ 422 (666)
T 2zxr_A 403 DEALFPAFKARVEAYAARFP 422 (666)
T ss_dssp CGGGHHHHHHHHHHHHHTSC
T ss_pred CcccHHHHHHHHHHHHHHhc
Confidence 67789999999988887543
No 18
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=60.23 E-value=4.6 Score=38.70 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-.+-..++|.+.|||||+|+||.+++
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 94 PEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 56667777899999999999999999975
No 19
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=59.77 E-value=27 Score=40.97 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=35.3
Q ss_pred cccc-cccccccCCCCCCCCC--CCCCCCcchhhhhccccccccc-----cHHHHH-HHHHHHcccccCCC
Q 002074 121 RACN-TQKCIRAGGKHNDLDD--VGKDTYHHTFFEMLGNWSFGDY-----FKNEAI-EWAWELLTKVYRLP 182 (972)
Q Consensus 121 r~~~-~QkCiR~gGkhnDl~~--VG~t~rHhTfFEMlGnfSfgdY-----fK~eai-~~awe~lt~~lgl~ 182 (972)
|++. .++|.|- . .. -|.. |=|- |+|..-++|++- +=++.+ .++++|+. .||||
T Consensus 346 rl~q~ig~~FR~-----E-pgs~~GL~-R~RE-F~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~-~LGLp 407 (522)
T 2cja_A 346 KVFDRSGTSHRY-----E-SGGIHGIE-RVDE-FHRIEIVWIGTKEEVLKCAEELHDRYMHIFND-ILDIE 407 (522)
T ss_dssp EEEECSSEEECC-----C-SSSCCCTT-SCSE-EEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH-TSCCC
T ss_pred eEEEEcCceEeC-----C-CCCCCCCe-EeEE-EEEeeEEEEeChHHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence 6777 8899994 4 22 2222 3333 678888999841 224567 88888885 49999
No 20
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=59.68 E-value=4.4 Score=37.46 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-.+--.++|.+.||+||+|+||.+++
T Consensus 72 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 72 NRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 55666677789999999999999999975
No 21
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=58.30 E-value=4.8 Score=37.55 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
+++-.+--.++|.+.||+||+|+||.+++
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 45555666788999999999999999975
No 22
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=57.66 E-value=5.5 Score=36.48 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 163 fK~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
-|++-++-..++|.+.||+||+++||++++
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 72 EPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 377788888999999999999999999975
No 23
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=55.45 E-value=5.6 Score=38.05 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-.+-.-++|.+.||+||+|+||.+++
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 94 PKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 56666677789999999999999999975
No 24
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=53.21 E-value=5.9 Score=38.01 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-.+-.-++|.+.||+||+|+||.+++
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 45566667799999999999999999975
No 25
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=52.37 E-value=7.5 Score=36.46 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 163 fK~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
-|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 72 NNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp THHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 478888889999999999999999999975
No 26
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=51.35 E-value=7.3 Score=35.78 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..++|.+.||+||+++||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 73 TQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999999976
No 27
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=51.35 E-value=7.3 Score=35.60 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..++|.+.||+||+++||++.+
T Consensus 72 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 72 NRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 67778888899999999999999999976
No 28
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=49.65 E-value=8.1 Score=35.48 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..++|.+.||+||+++||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 73 NKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 67778888899999999999999999976
No 29
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=49.65 E-value=8 Score=35.82 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..++|.+.||+||+++||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 73 NIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999999976
No 30
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=43.54 E-value=9.2 Score=41.46 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccc-----cccccc----ccccccccCCC----C-cccccccccccc
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFAN-----AGMNQY----KPIFLGTADPN----T-QLSKLTRACNTQ 126 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftn-----AGm~qf----k~~flG~~~p~----~-~~~~~~r~~~~Q 126 (972)
+.|.+.+-+||.++|...|..--+.+.+| ++-.. |=|.++ ++++|-.. |. . -.+...|+-..-
T Consensus 19 s~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~S-pe~~~~~l~~~g~~rvf~ig 95 (294)
T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHS-MILHKQLAIAMGLKKIFVLS 95 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSC-SHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccC-hHHHHHHHhhcCccceEEEE
Confidence 46777888899999999886544444311 11000 112111 12334211 10 0 001246888889
Q ss_pred cccccCCCCCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHccccc
Q 002074 127 KCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVY 179 (972)
Q Consensus 127 kCiR~gGkhnDl~~VG~t~rHhTfFEMlG-nfSfgdYfK~eai~~awe~lt~~l 179 (972)
+|.|. +=+.. .|+||..=|-|++ -.+|.|| +|.+..+.+|+...+
T Consensus 96 ~~FR~-----E~pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 96 PNIRL-----ESRQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EEECC-----CCGGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred ccEeC-----CCCCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 99995 42112 2579998888885 4455564 688999988877543
No 31
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=41.14 E-value=14 Score=29.57 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 16 k~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 16 KRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 66667777888999999999999999875
No 32
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=40.93 E-value=14 Score=29.59 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 163 fK~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 366677778888999999999999999875
No 33
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=39.40 E-value=14 Score=35.52 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEECCCCcC----C-CCCcHHHHHHHHhhCCCC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA----G-LAPDNEARDIWLKFLPAS 216 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~----~-l~~D~E~~~iW~~~~~~~ 216 (972)
|++-++-..+.|.+.||+|++++||++.+-.... | +.+|......|.+.+|++
T Consensus 78 k~~l~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~~~~~g~e~~W~~~~~~~ 135 (148)
T 3n4h_A 78 KEELLLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRLLMEPGEEEKWFNSLPEG 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC-----------------
T ss_pred HHHHHHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEECCCCcchHHHHHhCcHH
Confidence 6778888889999999999999999998643211 2 455666666777665553
No 34
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=38.75 E-value=18 Score=29.13 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-.-+.|.+.||+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55567777788889999999999999875
No 35
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=36.37 E-value=39 Score=28.62 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~ 211 (972)
|++-++-..+.|.+.||+|++++||.+.+ .++++=+. +|..
T Consensus 17 k~~L~~~l~~~l~~~lgip~~~v~V~i~e------~~~~~w~~-v~~~ 57 (76)
T 1gyx_A 17 KAALAADITDVIIRHLNSKDSSISIALQQ------IQPESWQA-IWDA 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEEEE------CCGGGHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCceEEEEEEE------eChHHEEE-EEch
Confidence 56667777888889999999999999976 34455555 6643
No 36
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=35.93 E-value=29 Score=28.15 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-.-+.+.+.||+|++.++|.+.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66667777788888999999999999875
No 37
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=30.39 E-value=30 Score=28.51 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 66667777888889999999999999875
No 38
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=29.96 E-value=25 Score=32.77 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..+.|.+.||+||+++||++.+
T Consensus 75 K~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 75 KKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 66778888888999999999999999975
No 39
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=28.59 E-value=42 Score=38.93 Aligned_cols=99 Identities=17% Similarity=0.310 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------ccccccccCC---CCc-cccccccccccccccc
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADP---NTQ-LSKLTRACNTQKCIRA 131 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qf------k~~flG~~~p---~~~-~~~~~r~~~~QkCiR~ 131 (972)
.|-+.+=+||.++|...|..--|.+.. +.+|-..| ++++|-+++- .-- .+.+.|+-..-+|.|.
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~------~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~ 256 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAP------SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 256 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEec------CCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEec
Confidence 445556789999999888654444421 11222222 1334432210 000 0124677788899997
Q ss_pred CCCCCCCCCCCCCCCcchhhhhccc-cccc-cccHHHHHHHHHHHcc
Q 002074 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (972)
Q Consensus 132 gGkhnDl~~VG~t~rHhTfFEMlGn-fSfg-dYfK~eai~~awe~lt 176 (972)
|+. .|+||..=|-||+- .||| || +|.++.+-+++.
T Consensus 257 -------E~~-~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 257 -------ENS-NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp -------CCC-CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred -------CCC-CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 333 36899988999986 7898 57 556665555543
No 40
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=27.15 E-value=30 Score=32.41 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..+.|.+.||+||+++||++.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77888888999999999999999999976
No 41
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=26.99 E-value=23 Score=39.33 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccc------------ccccccCC---C-Cccccccccccc
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP------------IFLGTADP---N-TQLSKLTRACNT 125 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~------------~flG~~~p---~-~~~~~~~r~~~~ 125 (972)
+|-+.+=+||.++|-..|..=-|.+.. +. .|+..+|+= .||-+.+- . --.+.+.|+-..
T Consensus 41 ~i~~~iR~ff~~~gF~EVeTPiL~~~~-~~----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqI 115 (345)
T 3a5y_A 41 AIMAEIRRFFADRGVLEVETPCMSQAT-VT----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQL 115 (345)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC-CC----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEecC-CC----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEEE
Confidence 344556679999999888754454422 11 123334432 23322110 0 000135678888
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHcccccC
Q 002074 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVYR 180 (972)
Q Consensus 126 QkCiR~gGkhnDl~~VG~t~rHhTfFEMlG-nfSfgdYfK~eai~~awe~lt~~lg 180 (972)
-+|.|. |+. |.||..=|-||- -.+|.|| ++.++.+=+++..+++
T Consensus 116 g~~FR~-------E~~--~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 116 CRSFRN-------EEM--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLD 160 (345)
T ss_dssp EEEECC-------CCC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHC
T ss_pred EcceeC-------CCC--cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHc
Confidence 999997 334 789999888884 4577776 5566666565555444
No 42
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=26.68 E-value=9.5 Score=30.27 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=9.5
Q ss_pred HHHHHHhhhcCCccC
Q 002074 925 EWLTAALQPLKGRCG 939 (972)
Q Consensus 925 ~l~k~v~~~lgGkGG 939 (972)
++..+.+..+.|+||
T Consensus 17 klaeeaakllegggg 31 (62)
T 2i7u_A 17 KLAEEAAKLLEGGGG 31 (62)
T ss_dssp HHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhcCCC
Confidence 445566777776666
No 43
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=26.17 E-value=65 Score=35.64 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=23.1
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf 315 (972)
+|=--|+|+|||++++-|.+|.=|.=.|
T Consensus 313 PhgG~glGiDRLvmll~g~~~IRdVi~F 340 (345)
T 3a5y_A 313 DCSGVALGVDRLVMLALGAETLAEVIAF 340 (345)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGGSSS
T ss_pred CCcEEEEcHHHHHHHHcCCCcHheEecC
Confidence 4555699999999999999998777554
No 44
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=26.13 E-value=35 Score=28.50 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 17 K~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 17 KAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 66677777888889999999999999865
No 45
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=25.21 E-value=36 Score=26.87 Aligned_cols=29 Identities=3% Similarity=-0.107 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55566777788889999999999999875
No 46
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=24.72 E-value=1.1e+02 Score=30.33 Aligned_cols=89 Identities=16% Similarity=0.036 Sum_probs=62.7
Q ss_pred CCCCCEEE-EEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHH
Q 002074 623 FSVGEEVI-CKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQI 701 (972)
Q Consensus 623 l~~G~~V~-~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I 701 (972)
+..|+.|+ ..+|..-|---..+|-|++||.. .|---..+--..+|..+.+= -|.+..+-++..++=+.+-...
T Consensus 65 i~~~~kveniVfdYnG~~pErF~hraqlLlRe-----eGfinftaY~tKtpghlhly-IhkghttL~E~~ql~~~lS~kL 138 (180)
T 2atz_A 65 ILRNDKVENIVFDYNGRNPERFYHKAQLLLRE-----EGFMNFTAYNTKTPGHLHLY-VHKGHTELGEGERLVKTLSMKL 138 (180)
T ss_dssp SBTTTEESCEEEEECSSCHHHHHHHHHHHHHH-----TTCCCEEEEECSSTTCEEEE-ECCCSEEHHHHHHHHHHHHHHH
T ss_pred hcCCCceeEEEEEeCCCCHHHHHHHHHHHHHH-----hCcceeEeeccCCCCeEEEE-EecCCccHHHHHHHHHHHHHHH
Confidence 55677776 67888888888899999998763 34321111112356666663 3556778888888888888899
Q ss_pred HcCCCEEEEEeCHHHH
Q 002074 702 KAELDVFSKEATLAEA 717 (972)
Q Consensus 702 ~~n~pV~~~~~~~eeA 717 (972)
++.+|.+++..|-.+.
T Consensus 139 a~klpkeWr~fPs~dl 154 (180)
T 2atz_A 139 AQGLPKEWKVFPSNEW 154 (180)
T ss_dssp HTTSCCCEEEESCTTS
T ss_pred HhhCccceeeCCCccC
Confidence 9999999998875443
No 47
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=24.48 E-value=27 Score=39.86 Aligned_cols=101 Identities=16% Similarity=0.302 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccC-CCC--Cccccccccccc-ccccccccCCCCc----ccccccccccccccccC
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV-NDP--TLLFANAGMNQY-KPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~-~dp--tllftnAGm~qf-k~~flG~~~p~~~----~~~~~r~~~~QkCiR~g 132 (972)
++|-+.+-+||.++|...|..--+.+. ..+ .++-|+. | ++++|-++ |.-. .+.+.|+-..-+|.|.
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~----~~~~~~L~~S-pql~~~~~~~g~~rvf~ig~~FR~- 211 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFLAQS-PQLYKELMAGVVERVFEVAPAWRA- 211 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEE----TTEEEEECSC-CHHHHHHHHHHHSEEEEEEEEECC-
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEec----CCceEEecCC-cHHHHHHHHhCcCceEEEcccccc-
Confidence 356667788999999988865444432 111 1111211 1 23444221 2100 0013577788899996
Q ss_pred CCCCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHcc
Q 002074 133 GKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (972)
Q Consensus 133 GkhnDl~~VG~t~rHhTfFEMlG-nfSfgdYfK~eai~~awe~lt 176 (972)
+ +. .++||..=|-|+. -.+|.|| +|.+..+.+++.
T Consensus 212 ----E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~ 247 (429)
T 1wyd_A 212 ----E--ES-DTPFHLAEFISMDVEMAFADY--NDVMQLLEKILH 247 (429)
T ss_dssp ----C--CC-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHH
T ss_pred ----c--CC-ccccccceeeEeeeeecCCCH--HHHHHHHHHHHH
Confidence 2 22 2569998788875 4555575 556666655544
No 48
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=24.46 E-value=27 Score=40.08 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc----ccccccccCC---CCcc-cccccccccccccccCC
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY----KPIFLGTADP---NTQL-SKLTRACNTQKCIRAGG 133 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qf----k~~flG~~~p---~~~~-~~~~r~~~~QkCiR~gG 133 (972)
+|-+.+=+||.++|...|..=-+.+. ++.- .|-+.+| ++++|-+++- .--+ +.+.|+-..-+|.|..
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~-~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E- 216 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIAT-ATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAE- 216 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS-CSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecC-CCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECC-
Confidence 45566778999999888864333331 1100 0101111 2344433211 0000 2356788889999973
Q ss_pred CCCCCCCCCCCCCcchhhhhcc-cccccc-cc-----HHHHHHHHHHHc
Q 002074 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGD-YF-----KNEAIEWAWELL 175 (972)
Q Consensus 134 khnDl~~VG~t~rHhTfFEMlG-nfSfgd-Yf-----K~eai~~awe~l 175 (972)
+ .. |.||..=|-||- -.+|.| |- -++-|.+++.-+
T Consensus 217 ---~---~~-t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v 258 (438)
T 3nem_A 217 ---E---HN-TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 258 (438)
T ss_dssp ---S---SC-CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ---C---CC-CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHH
Confidence 2 22 579987777774 557777 62 344455555433
No 49
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=23.56 E-value=29 Score=40.72 Aligned_cols=100 Identities=11% Similarity=0.206 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccc--------cccccccCCCC----ccccccccccccccc
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADPNT----QLSKLTRACNTQKCI 129 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk--------~~flG~~~p~~----~~~~~~r~~~~QkCi 129 (972)
+|-+.+=+||.++|-..|..--|.|.. ..|+--+|. ++||-.++--. -.+.+.|+-..-+|+
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~------gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~F 254 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIP------GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQF 254 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------CSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccC------CCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcce
Confidence 344456679999998888654444421 112222221 34444332100 001256788889999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhcc-cccccccc-----HHHHHHHHHHHcc
Q 002074 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELLT 176 (972)
Q Consensus 130 R~gGkhnDl~~VG~t~rHhTfFEMlG-nfSfgdYf-----K~eai~~awe~lt 176 (972)
|. |+++ .||..=|-||- -.+|.||- -++-|.++|.-+.
T Consensus 255 R~-------E~~~--trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 255 RN-------EGID--LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp CC-------SCCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eC-------CCCC--CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 97 3333 49999888884 67888873 3455566665443
No 50
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=23.51 E-value=28 Score=40.07 Aligned_cols=89 Identities=17% Similarity=0.349 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhhCCCeeecCCCccc---CCCCCccccccccccc-ccccccccCC---CCcccccccccccccccccCCC
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVP---VNDPTLLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp---~~dptllftnAGm~qf-k~~flG~~~p---~~~~~~~~r~~~~QkCiR~gGk 134 (972)
+|-+.+=+||.++|...|..=-|.+ ..--+ +|. .+-| ++++|-.++- .--++.+.|+-..-+|+|..
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~-~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E-- 234 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGST-LFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAE-- 234 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------CC-CCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCC--
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCCCccc-ccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecC--
Confidence 3444556899999988886433332 11111 121 1122 2344433321 00011256778888999962
Q ss_pred CCCCCCCCCCCCcchhhhhcc-ccccccc
Q 002074 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDY 162 (972)
Q Consensus 135 hnDl~~VG~t~rHhTfFEMlG-nfSfgdY 162 (972)
++ .|.||..=|-||- -.+|.||
T Consensus 235 --~~----~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 235 --QS----RTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp --SC----CCSSCCSEEEEEEEEEESCCH
T ss_pred --CC----CCCcchHHHHHhHHHHhcCCH
Confidence 21 3689987788874 4567776
No 51
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=23.41 E-value=29 Score=39.55 Aligned_cols=102 Identities=15% Similarity=0.237 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccC-CCC--Ccccccc-cccccccccccccCCCCc----ccccccccccccccccC
Q 002074 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV-NDP--TLLFANA-GMNQYKPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (972)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~-~dp--tllftnA-Gm~qfk~~flG~~~p~~~----~~~~~r~~~~QkCiR~g 132 (972)
++|.+.+-+||.++|...|..--+.+. ..+ .++-|+. | ++++|-++ |.-. .+.+.|+-..-+|.|.
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g----~~~~L~~S-pel~~~~l~~g~~rvf~ig~~FR~- 202 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFE----KRAYLAQS-PQLYKQIMVGVFERVYEVAPVWRM- 202 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC---------------------------------CHHHHHHHHHHHSEEEEEEEC----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCC----CcEEeeeC-HHHHHHHHhhCCCceeEEeCceEC-
Confidence 356677888999999998874444332 111 1222221 1 23344211 1000 0124578888999996
Q ss_pred CCCCCCCCCCCCCCcchhhhhcc-ccccc-cccHHHHHHHHHHHccc
Q 002074 133 GKHNDLDDVGKDTYHHTFFEMLG-NWSFG-DYFKNEAIEWAWELLTK 177 (972)
Q Consensus 133 GkhnDl~~VG~t~rHhTfFEMlG-nfSfg-dYfK~eai~~awe~lt~ 177 (972)
+ +. .++||..=|-|++ -.+|. || +|.+..+.+++..
T Consensus 203 ----E--~~-~~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~ 240 (422)
T 1n9w_A 203 ----E--EH-HTSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAE 240 (422)
T ss_dssp -----------------CCEEEEEEEESCSSH--HHHHHHHHHHHHH
T ss_pred ----C--CC-CCCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHH
Confidence 2 22 2469998888885 45555 76 6677776666544
No 52
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=22.97 E-value=29 Score=40.88 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccc------cccccccCCCC----ccccccccccccccccc
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk------~~flG~~~p~~----~~~~~~r~~~~QkCiR~ 131 (972)
+|-+.+=+||.++|...|..--|++. ++ .+|-..|+ ++||-+++--. -.+.+.|+-..-+|+|.
T Consensus 249 ~i~~~iR~ff~~~gF~EVeTPiL~~~-~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~ 322 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGC-SS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRA 322 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC-------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEecc-cC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEec
Confidence 44455568999999888875555542 11 23334442 34443332100 00135677778999997
Q ss_pred CCCCCCCCCCCCCCCcchhhhhcccc-ccc-cc
Q 002074 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DY 162 (972)
Q Consensus 132 gGkhnDl~~VG~t~rHhTfFEMlGnf-Sfg-dY 162 (972)
. +. .|.||.+=|-||--. +|+ ||
T Consensus 323 E-------~~-~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 323 E-------NS-NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp S-------CC-CSSSCCSCEEEEEEEEECSSCT
T ss_pred C-------CC-CCCCcchhhhchhhhhhhhcCH
Confidence 3 22 368999889999764 887 56
No 53
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=22.76 E-value=74 Score=34.25 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=27.4
Q ss_pred cCCCCccccCchHHHHHHHHhCCCCCcccccc
Q 002074 284 PLPAKHVDTGLGFERLTSILQNKMSNYDTDVF 315 (972)
Q Consensus 284 ~Lp~k~IDTGmGLERl~~vlq~~~snydtdlf 315 (972)
=+|.++.=-|||+|||++++.|.+|.=|+=+|
T Consensus 253 G~p~P~~G~glGieRL~mll~g~~~Irdvi~F 284 (294)
T 1nnh_A 253 GKLKPSAGAGIGVERLVRFIVGAKHIAEVQPF 284 (294)
T ss_dssp TCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSS
T ss_pred CCCCCceEEEEcHHHHHHHHhCCCCHHHEEec
Confidence 37778999999999999999999988776444
No 54
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=22.66 E-value=30 Score=40.62 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc--------ccccccccCCCC----ccccccccccccccc
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT----QLSKLTRACNTQKCI 129 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qf--------k~~flG~~~p~~----~~~~~~r~~~~QkCi 129 (972)
.|-+.+=+||.++|-..|..=-|.+.. -.|..-+| ++.||-.++--. -.+.+.|+-..-+|+
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~~------gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~F 282 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPIP------GGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNF 282 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------CSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeccC------CCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehhe
Confidence 445556689999998888654444321 11222233 233443321100 002356788889999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhcc-cccccccc-----HHHHHHHHHHHc
Q 002074 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELL 175 (972)
Q Consensus 130 R~gGkhnDl~~VG~t~rHhTfFEMlG-nfSfgdYf-----K~eai~~awe~l 175 (972)
|. |+++ .||..=|-||- -.+|.||. -++-|.++|.-+
T Consensus 283 R~-------E~~~--~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 325 (529)
T 4ex5_A 283 RN-------EGVS--PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDA 325 (529)
T ss_dssp CC-------SCCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred ec-------CCCC--CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 97 3333 69999888884 46788873 344455555544
No 55
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=22.46 E-value=31 Score=40.29 Aligned_cols=103 Identities=16% Similarity=0.280 Sum_probs=54.0
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccC--CCCCccccccccccc-ccccccccCCCC----cccccccccccccccccCCC
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPV--NDPTLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGGK 134 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~--~dptllftnAGm~qf-k~~flG~~~p~~----~~~~~~r~~~~QkCiR~gGk 134 (972)
.|-+.+=+||.++|...|..=-|.+. .-..=.|+-- .+.| ++++|-.++--. -.+.+.|+-..-+|.|.
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~--- 263 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRN--- 263 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECC---
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccC---
Confidence 44455668999999888865444332 1000112110 0111 223443321000 00125677788999996
Q ss_pred CCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHcc
Q 002074 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (972)
Q Consensus 135 hnDl~~VG~t~rHhTfFEMlG-nfSfgdYfK~eai~~awe~lt 176 (972)
|+.+ .||..=|-||. -.+|.|| ++.+..+-+++.
T Consensus 264 ----E~~~--~rH~pEFt~lE~e~af~d~--~dlm~l~E~li~ 298 (504)
T 1e1o_A 264 ----EGIS--VRHNPEFTMMELYMAYADY--HDLIELTESLFR 298 (504)
T ss_dssp ----CCCC--C-CCSEEEEEEEEEESCCH--HHHHHHHHHHHH
T ss_pred ----CCCC--ccccCceeeeeeeecCCCH--HHHHHHHHHHHH
Confidence 3333 59999888886 5677787 455555555443
No 56
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=22.36 E-value=31 Score=40.14 Aligned_cols=104 Identities=13% Similarity=0.256 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCC--Cccccccccccc-ccccccccCCC---C-cccccccccccccccccCCC
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDP--TLLFANAGMNQY-KPIFLGTADPN---T-QLSKLTRACNTQKCIRAGGK 134 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dp--tllftnAGm~qf-k~~flG~~~p~---~-~~~~~~r~~~~QkCiR~gGk 134 (972)
.|-+.+=+||.++|...|..--|.+..-. .-.|+-- .+.| ++++|-+++-- - -.+.+.|+-..-+|.|.
T Consensus 179 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~--- 254 (493)
T 3a74_A 179 LIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRN--- 254 (493)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECC---
T ss_pred HHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccC---
Confidence 45566778999999988865444432100 0112110 0011 12344322100 0 00125677788999997
Q ss_pred CCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHccc
Q 002074 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (972)
Q Consensus 135 hnDl~~VG~t~rHhTfFEMlG-nfSfgdYfK~eai~~awe~lt~ 177 (972)
|+.+ .||..=|-||. -.+|.|| ++.+..+-+++..
T Consensus 255 ----E~~~--~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 255 ----EGIS--TRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp ----CCCB--TTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ----CCCC--cccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 3333 59999998986 5677787 5566666665543
No 57
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=22.16 E-value=85 Score=31.12 Aligned_cols=51 Identities=20% Similarity=0.493 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhCCCCCcccCCCCCCcccC---CCCCCCcCce
Q 002074 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEM---GDTGPCGPCS 240 (972)
Q Consensus 165 ~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~~~~~~I~~~~~~dNfW~m---G~~GpCGPcs 240 (972)
+-|-+||.+ .||+.+.| -.+++++.|++... -...-|||.- .++..|||..
T Consensus 107 ~GA~~fA~~-----~G~~~~~l--------------~t~~~~~~~~~~~~------~~~qpn~~~nv~p~~~~~cgpy~ 160 (162)
T 1apy_A 107 ESATTFAQS-----MGFINEDL--------------STSASQALHSDWLA------RNCQPNYWRNVIPDPSKYCGPYK 160 (162)
T ss_dssp HHHHHHHHH-----TTCCCCCC--------------CCHHHHHHHHHHHH------TTSCSCCBCSCBSCTTTCCSCCB
T ss_pred HHHHHHHHH-----cCCCcccc--------------CCHHHHHHHHHHHH------hccCCCccccCCCCCCCCCCCCC
Confidence 556667765 68877544 25677888876421 1256799953 3356799853
No 58
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=22.01 E-value=32 Score=39.37 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=23.5
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf 315 (972)
+|==-|+|+|||++++-|.+|.=|+=+|
T Consensus 399 PhgG~glGiDRLvmll~g~~~Irdvi~F 426 (435)
T 2xgt_A 399 PHGGYGLGLERFICWLTNTNHIRDVCLY 426 (435)
T ss_dssp CEEEEEEEHHHHHHHHHTCSCGGGGSSS
T ss_pred CCceEEEhHHHHHHHHcCCCcHHhEecc
Confidence 4566799999999999999998877555
No 59
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=21.91 E-value=32 Score=39.31 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccC-CCC--Cccccccccccc-ccccccccCC---CCcccccccccccccccccCCC
Q 002074 62 KVRDTFFKFFEDKNHVNWKSSPVVPV-NDP--TLLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (972)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~-~dp--tllftnAGm~qf-k~~flG~~~p---~~~~~~~~r~~~~QkCiR~gGk 134 (972)
.|-+.+-+||.++|...|..--+.+. ..+ .++=|+. | ++++|-+++- ..-.+...|+-..-+|.|.
T Consensus 140 ~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~----~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~--- 212 (434)
T 1x54_A 140 TLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKY----FDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRA--- 212 (434)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEE----TTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECC---
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEee----cCCcEEeccChHHHHHHHhcCccceEEEecceec---
Confidence 45567788999999998865444432 122 1111111 1 1233332210 0000124588888999996
Q ss_pred CCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHccc
Q 002074 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (972)
Q Consensus 135 hnDl~~VG~t~rHhTfFEMlG-nfSfgdYfK~eai~~awe~lt~ 177 (972)
+ +. .++||..=|-|++ -.+|.|| .|.+..+.+++..
T Consensus 213 --E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 249 (434)
T 1x54_A 213 --E--KS-RTRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSY 249 (434)
T ss_dssp --C--CC-CCSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred --C--CC-CCcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHH
Confidence 3 21 2469997788875 4555575 6677776666543
No 60
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=21.22 E-value=34 Score=39.75 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.7
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf 315 (972)
+|==-|+|+|||+++|-|.+|.=|+=+|
T Consensus 451 PhgG~glGiDRLvmll~g~~~IRdVi~F 478 (487)
T 1eov_A 451 PHAGGGIGLERVVMFYLDLKNIRRASLF 478 (487)
T ss_dssp CEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred CCeEEEEhHHHHHHHHcCCCcHHheeec
Confidence 5667799999999999999998777554
No 61
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.63 E-value=50 Score=26.85 Aligned_cols=29 Identities=7% Similarity=-0.143 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 002074 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (972)
Q Consensus 164 K~eai~~awe~lt~~lgl~~~rL~vT~~~ 192 (972)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 16 k~~L~~~it~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 16 VAALGEALTAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 66677777888889999999999999865
No 62
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=20.05 E-value=37 Score=23.63 Aligned_cols=10 Identities=60% Similarity=1.427 Sum_probs=7.0
Q ss_pred CCCCCCcCce
Q 002074 231 GDTGPCGPCS 240 (972)
Q Consensus 231 G~~GpCGPcs 240 (972)
|+.||=|||-
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 5677778873
Done!