BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002076
(972 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 133/239 (55%), Gaps = 10/239 (4%)
Query: 664 TRSRFRIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMEN 722
R ++ R++I E++Y ++ ++ D L+ + + F +E G+D GG+ +++
Sbjct: 26 NRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESE-----KGLDYGGVAREWFFL 80
Query: 723 ITRAAFDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIP 780
+++ F+ YGLF+ T ++ L NP SG+ +E HL +F F+G + A+F G L+D
Sbjct: 81 LSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGF 140
Query: 781 FATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEE 840
F F + K LND+ S+D E Y L ++ E D +EL+L F I +G+ +
Sbjct: 141 FIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--LENDPTELDLMFCIDEENFGQTYQV 198
Query: 841 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHE 899
+L P G I VTNEN +I LV R ++++Q + FL GF +L+ D I +F+E+E
Sbjct: 199 DLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENE 257
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 133/239 (55%), Gaps = 10/239 (4%)
Query: 664 TRSRFRIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMEN 722
R ++ R++I E++Y ++ ++ D L+ + + F +E G+D GG+ +++
Sbjct: 26 NRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESE-----KGLDYGGVAREWFFL 80
Query: 723 ITRAAFDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIP 780
+++ F+ YGLF+ T ++ L NP SG+ +E HL +F F+G + A+F G L+D
Sbjct: 81 LSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGF 140
Query: 781 FATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEE 840
F F + K LND+ S+D E Y L ++ E D +EL+L F I +G+ +
Sbjct: 141 FIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--LENDPTELDLMFCIDEENFGQTYQV 198
Query: 841 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHE 899
+L P G I VTNEN +I LV R ++++Q + FL GF +L+ D I +F+E+E
Sbjct: 199 DLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENE 257
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 139/277 (50%), Gaps = 19/277 (6%)
Query: 628 EILKQAPFLVPFTSRAKIFQSQLASVRQ--RHGSHGVFTRSRFRIRRDHILEDAYSQMST 685
E+L Q P + F + K F+ +L + + R V +RRDH+ ED+Y ++
Sbjct: 15 EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDMAV------HVRRDHVFEDSYRELHR 67
Query: 686 MSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKET-SDHLLY 744
S E+++ + + F E G D GG+ +++ I+R F+ Y LF+ + D + Y
Sbjct: 68 KSPEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTY 122
Query: 745 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDP 804
S + HL +F F+G ++AKA+++ L++ F F + K D+ S D
Sbjct: 123 TINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDY 182
Query: 805 ELYRHLIFLKHYEADISEL--ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHL 862
Y+ L++L E D+S L +L F E+G +L P G NI VT EN ++HL
Sbjct: 183 HFYQGLVYL--LENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHL 240
Query: 863 VSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHE 899
V R+ IR+Q + FL GF ++I K I +F E E
Sbjct: 241 VCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQE 277
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 131/239 (54%), Gaps = 10/239 (4%)
Query: 664 TRSRFRIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMEN 722
R ++ R++I E++Y ++ ++ D L+ + + F +E G+D GG+ +++
Sbjct: 41 NRFEXKLHRNNIFEESYRRIXSVKRPDVLKARLWIEFESE-----KGLDYGGVAREWFFL 95
Query: 723 ITRAAFDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIP 780
+++ F+ YGLF+ T ++ L NP SG+ +E HL +F F+G + A+F G L+D
Sbjct: 96 LSKEXFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGF 155
Query: 781 FATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEE 840
F F K LND S+D E Y L ++ E D +EL+L F I +G+ +
Sbjct: 156 FIRPFYKXXLGKQITLNDXESVDSEYYNSLKWI--LENDPTELDLXFCIDEENFGQTYQV 213
Query: 841 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHE 899
+L P G I VTNEN +I LV R ++++Q + FL GF +L+ D I +F+E+E
Sbjct: 214 DLKPNGSEIXVTNENKREYIDLVIQWRFVNRVQKQXNAFLEGFTELLPIDLIKIFDENE 272
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 132/234 (56%), Gaps = 10/234 (4%)
Query: 669 RIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAA 727
++RR +LED+Y ++ + D L+ + + F E G+D GG+ +++ I++
Sbjct: 32 KLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGE-----KGLDYGGVAREWFFLISKEM 86
Query: 728 FDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFF 785
F+ YGLF+ T ++ L NP SG+ +E HL +F F+G + A++ G L+D F F
Sbjct: 87 FNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPF 146
Query: 786 LSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPG 845
+ K L+D+ S+D E Y L ++ E D +EL+L F+I +G+ + EL G
Sbjct: 147 YKMMLHKPITLHDMESVDSEYYNSLRWI--LENDPTELDLRFIIDEELFGQTHQHELKNG 204
Query: 846 GKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHE 899
G I VTN+N +I+LV R +I++Q + F GF +LI +D I +F+E+E
Sbjct: 205 GSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENE 258
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 10/233 (4%)
Query: 670 IRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFD 729
+RRDH+ ED+Y ++ S E+++ + + F E G D GG+ +++ I+R F+
Sbjct: 35 VRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFN 89
Query: 730 VQYGLFKET-SDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSK 788
Y LF+ + D + Y S + HL +F F+G ++AKA+++ L++ F F
Sbjct: 90 PMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKH 149
Query: 789 LKQKYNYLNDLPSLDPELYRHLIFLKHYEADISEL--ELYFVILNNEYGEQTEEELLPGG 846
+ K D+ S D Y+ L++L E D+S L +L F E+G +L P G
Sbjct: 150 ILGKSVRYTDMESEDYHFYQGLVYL--LENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNG 207
Query: 847 KNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHE 899
NI VT EN ++HLV R+ IR+Q + FL GF ++I K I +F E E
Sbjct: 208 ANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQE 260
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 8/232 (3%)
Query: 670 IRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFD 729
+ R + ED++ Q+ + S +DLR + V F E G+D GG+ +++ ++ +
Sbjct: 47 VTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPGE-----EGLDYGGVAREWFFLLSHEVSN 101
Query: 730 VQYGLFKETS--DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLS 787
Y LF+ ++ L NP S I+ HL++F F+G +A A+F G +D F+ F
Sbjct: 102 PMYCLFEYAGKDNYCLQINPAS-YINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYK 160
Query: 788 KLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGK 847
++ K L DL S+DPE Y LI++K + +LE+YF + GE +L P G
Sbjct: 161 RILNKPVGLKDLESIDPEFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGG 220
Query: 848 NIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHE 899
NI VT EN +I +V+ RL+ + +Q+ F GF +++ + ++ F+ E
Sbjct: 221 NILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKE 272
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 8/256 (3%)
Query: 646 FQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV 705
F+ +LA R S+ + + + + R + ED++ Q+ + DLR + V F E
Sbjct: 4 FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE--- 60
Query: 706 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKET--SDHLLYPNPGSGMIHEQHLQFFHFL 763
G+D GG+ +++ ++ + Y LF+ +++ L NP S I+ HL +F F+
Sbjct: 61 --EGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAS-TINPDHLSYFCFI 117
Query: 764 GILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISEL 823
G +A A+F G +D F+ F ++ K + DL S+D E Y LI+++ + L
Sbjct: 118 GRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGL 177
Query: 824 ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGF 883
E+YF + G+ T +L GG NI VT EN +I L++ R + +++Q+ FL GF
Sbjct: 178 EMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237
Query: 884 QQLIQKDWIDMFNEHE 899
+++ W+ F+E E
Sbjct: 238 NEVVPLQWLQYFDEKE 253
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 17/264 (6%)
Query: 639 FTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVT 698
+ KI + +L+ + + G R + R+ I E++Y Q+ +DL + +
Sbjct: 4 LVQKLKILRQELSQQQPQAG------HCRIEVSREEIFEESYRQVXKXRPKDLWKRLXIK 57
Query: 699 FVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQH 756
F E G+D GG+ ++++ ++ + YGLF+ + D + L NP S ++ +H
Sbjct: 58 FRGE-----EGLDYGGVAREWLYLLSHEXLNPYYGLFQYSRDDIYTLQINPDSA-VNPEH 111
Query: 757 LQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHY 816
L +FHF+G + A+F G +D F F +L K L+D +DP+L+ L+++
Sbjct: 112 LSYFHFVGRIXGXAVFHGHYIDGGFTLPFYKQLLGKSITLDDXELVDPDLHNSLVWI--L 169
Query: 817 EADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQ 875
E DI+ L+ F + +N YGE + EL P GK+I V EN ++ L N R I Q
Sbjct: 170 ENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQ 229
Query: 876 SSHFLRGFQQLIQKDWIDMFNEHE 899
+GF ++I + + F+E E
Sbjct: 230 FLALQKGFNEVIPQHLLKTFDEKE 253
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 9/233 (3%)
Query: 669 RIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAF 728
++RR +I EDAY ++ + EDL+ + + F E G+D GG+ ++F ++ F
Sbjct: 78 KVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGE-----EGLDYGGVSREFFFLLSHEMF 132
Query: 729 DVQYGLFKETS--DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFL 786
+ Y LF+ ++ ++ + NP SG I+ +HL +F F+G ++ +F +D F
Sbjct: 133 NPFYCLFEYSAYDNYTIQINPNSG-INPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALY 191
Query: 787 SKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGG 846
+ +K L D+ +D E+Y L ++ D L+L F + +GE +L P G
Sbjct: 192 KMMLRKKVVLQDMEGVDAEVYNSLNWMLENSID-GVLDLTFSADDERFGEVVTVDLKPDG 250
Query: 847 KNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHE 899
+NI VT+ N ++ L + R+ ++++Q F+ GF +LI +D + +F+E E
Sbjct: 251 RNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERE 303
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 121/266 (45%), Gaps = 15/266 (5%)
Query: 667 RFRIRRDHILEDAYSQMSTMSEE---DLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENI 723
R ++RRDHI++DA ++ ++ E DL+ + V F E GV+E GG+ K+F + +
Sbjct: 7 RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDE-----GGVSKEFFQLV 61
Query: 724 TRAAFDVQYGLFK-ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFA 782
F+ G+F + S L + NP S Q F +GI+L A++ ++D+ F
Sbjct: 62 VEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQ----FTLIGIVLGLAIYNNCILDVHFP 117
Query: 783 TFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADI-SELELYFVILNNE-YGEQTEE 840
KL K DL P LY+ L L YE ++ ++ + F I + +G
Sbjct: 118 MVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMY 177
Query: 841 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEX 900
+L G I +TNEN F++L S++ LN + +Q F RGF + + + E
Sbjct: 178 DLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEE 237
Query: 901 XXXXXXXXXXXXXXXXRQNTNYVGGY 926
+ T Y GGY
Sbjct: 238 IELLICGSRNLDFQALEETTEYDGGY 263
>pdb|3AL3|A Chain A, Crystal Structure Of Topbp1 Brct78-Bach1 Peptide Complex
Length = 235
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 84 VNRQCFGPQSAXXXXXXXXXNARNVSDISV--------LVETCRLMKHFVQE------SG 129
+ +QCF P N + ++ ++ +E CR HFVQE S
Sbjct: 37 IEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSS 96
Query: 130 DVVGLFAGIDYSSKR-ALVDFRVKK 153
++ + GI+ +R AL R +K
Sbjct: 97 SILDVLTGINVQQRRLALAAMRWRK 121
>pdb|3AL2|A Chain A, Crystal Structure Of Topbp1 Brct78
Length = 235
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 84 VNRQCFGPQSAXXXXXXXXXNARNVSDISV--------LVETCRLMKHFVQE------SG 129
+ +QCF P N + ++ ++ +E CR HFVQE S
Sbjct: 37 IEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSS 96
Query: 130 DVVGLFAGIDYSSKR-ALVDFRVKK 153
++ + GI+ +R AL R +K
Sbjct: 97 SILDVLTGINVQQRRLALAAXRWRK 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,015,691
Number of Sequences: 62578
Number of extensions: 1067864
Number of successful extensions: 2208
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2171
Number of HSP's gapped (non-prelim): 17
length of query: 972
length of database: 14,973,337
effective HSP length: 108
effective length of query: 864
effective length of database: 8,214,913
effective search space: 7097684832
effective search space used: 7097684832
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)