Query 002076
Match_columns 972
No_of_seqs 359 out of 1505
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 15:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4427 E3 ubiquitin protein l 100.0 7E-155 2E-159 1301.3 57.8 894 18-967 2-1012(1096)
2 KOG0942 E3 ubiquitin protein l 100.0 5E-136 1E-140 1179.8 63.3 886 17-969 1-943 (1001)
3 KOG0941 E3 ubiquitin protein l 100.0 4.6E-76 9.9E-81 681.7 29.4 414 518-969 362-794 (850)
4 COG5021 HUL4 Ubiquitin-protein 100.0 1.3E-69 2.8E-74 653.0 29.6 295 664-969 513-809 (872)
5 cd00078 HECTc HECT domain; C-t 100.0 5.1E-65 1.1E-69 577.7 28.4 292 667-969 2-296 (352)
6 KOG0939 E3 ubiquitin-protein l 100.0 4.3E-63 9.3E-68 563.3 24.1 323 627-969 331-656 (720)
7 smart00119 HECTc Domain Homolo 100.0 7.3E-61 1.6E-65 538.5 26.6 273 687-969 3-278 (336)
8 KOG0170 E3 ubiquitin protein l 100.0 6.1E-59 1.3E-63 510.8 22.1 353 600-969 133-557 (621)
9 PF00632 HECT: HECT-domain (ub 100.0 3.3E-47 7.2E-52 426.8 16.0 245 721-969 1-257 (317)
10 KOG0940 Ubiquitin protein liga 100.0 2.3E-41 5E-46 376.0 8.3 289 664-969 15-304 (358)
11 KOG0943 Predicted ubiquitin-pr 100.0 7.7E-29 1.7E-33 287.9 20.2 209 754-967 2739-2957(3015)
12 PF00612 IQ: IQ calmodulin-bin 97.6 5.6E-05 1.2E-09 49.8 3.2 21 46-66 1-21 (21)
13 smart00015 IQ Short calmodulin 97.0 0.00046 1E-08 48.0 2.5 22 45-66 2-23 (26)
14 KOG0377 Protein serine/threoni 78.7 2.2 4.7E-05 49.0 4.1 23 46-68 17-39 (631)
15 PTZ00014 myosin-A; Provisional 73.9 5.4 0.00012 50.8 6.2 35 35-69 766-800 (821)
16 KOG1419 Voltage-gated K+ chann 63.6 6.2 0.00013 46.9 3.4 34 28-61 322-355 (654)
17 PTZ00014 myosin-A; Provisional 63.2 11 0.00023 48.2 5.7 27 39-65 793-819 (821)
18 KOG0164 Myosin class I heavy c 56.6 18 0.00039 44.3 5.6 29 43-71 693-721 (1001)
19 PF08763 Ca_chan_IQ: Voltage g 49.4 17 0.00037 27.3 2.5 21 48-68 11-31 (35)
20 KOG0163 Myosin class VI heavy 48.6 14 0.0003 45.3 3.0 29 42-70 809-837 (1259)
21 KOG0160 Myosin class V heavy c 37.1 54 0.0012 41.9 5.8 36 28-63 678-713 (862)
22 KOG0160 Myosin class V heavy c 36.5 49 0.0011 42.2 5.3 31 45-75 717-747 (862)
23 PF03378 CAS_CSE1: CAS/CSE pro 23.5 1.3E+03 0.028 27.5 16.8 40 319-362 174-213 (435)
24 KOG0164 Myosin class I heavy c 23.2 1.9E+02 0.0042 36.0 6.8 43 28-71 701-743 (1001)
25 KOG0162 Myosin class I heavy c 20.9 1.2E+02 0.0026 37.6 4.6 31 43-74 693-723 (1106)
No 1
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-155 Score=1301.32 Aligned_cols=894 Identities=28% Similarity=0.434 Sum_probs=743.6
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc---CCchhH
Q 002076 18 RSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQC---FGPQSA 94 (972)
Q Consensus 18 ~S~~e~~r~~lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~~~~~~~~~~~~~~---~~~~~~ 94 (972)
.+..+++|++||+|+++|||+|+.+|||++||++||++||||++||+++.+|+++||.++..+....++.. ..|.-.
T Consensus 2 ~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~~~erv~~~~l~ 81 (1096)
T KOG4427|consen 2 FSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTKVLERVARPFLP 81 (1096)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHhhhHHH
Confidence 34445789999999999999999999999999999999999999999999999999999997764322211 122335
Q ss_pred hhhhheeEEecccccchHHHHHHHHHHHHHhhhcCCccccccccccccchhh-HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 002076 95 FFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRAL-VDFRVKKFAFACIQAVHQNRKELKDQL 173 (972)
Q Consensus 95 ~lR~llFf~~~~~~~D~~RL~~lC~~ll~s~~~~~~~~~~~~~~~~~~e~~~-~~~qiKkll~lC~~~L~~~~~~~~~~~ 173 (972)
++|.+++.++..++ |.+||+++||+|+.+|.++++.+.+||++++++|+.. |+.|||++++.|++.|.+++++..
T Consensus 82 var~ll~q~r~ie~-~~e~~~~iCr~il~smds~n~~~~sfvsl~l~ke~sk~w~~qik~ils~c~~lL~eln~Er~--- 157 (1096)
T KOG4427|consen 82 VARSLLVQHRKIEA-REERLEQICRKILLSMDSENDQKYSFVSLALGKEDSKTWICQIKRILSLCSFLLTELNPERI--- 157 (1096)
T ss_pred HHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhcCCCCcceeeeeehhcccchHHHHHHHHHHHHHHHHHHHhcCHHHH---
Confidence 78888888887633 3799999999999999999999999999999999765 599999999999999997665333
Q ss_pred CCCCCCCCCchHHHHHHHHHhhcCCchhH------------------HHHHHHHHhcchHHHHHHHHHcCCCCccccccc
Q 002076 174 FVTPEESNTPPTLLLEAVVFLIDSRLPWT------------------CKVVSYLLERNVFTLLRELIVTGKESMEIHSSY 235 (972)
Q Consensus 174 ~~~~~~~~~~~~~~L~~l~~lt~~~~~w~------------------~~i~~yL~~~g~y~~Lr~ll~~~~~~~~~~~~~ 235 (972)
.++. ..+++|+++++|||+++ |+ ++||||++|+|||+.+|.+|.++..+.++....
T Consensus 158 -ad~~----~~alll~~livfTdpks-Wkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~l~~ 231 (1096)
T KOG4427|consen 158 -ADSI----VNALLLHILIVFTDPKS-WKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPRLVI 231 (1096)
T ss_pred -HHHH----HHHHHHHeeeEEeCCcc-eeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcceee
Confidence 2222 46899999999999999 87 779999999999999999999999998884333
Q ss_pred CCcchHHHHHHhhhhccccCCCcCCCCCCcc------hhhhhhccccchhhcch----hhHHHHhhcCCchhhHHHHHHH
Q 002076 236 GRISSLERVLTLIIPHIGQKPCICPNIDPRW------SFFSQILTIPFLWHLFP----YIKEVFATGRTSQHYIHQMALC 305 (972)
Q Consensus 236 ~~~~~l~~ll~l~~~~~~~~~~~~~~~~~~~------~f~~~IlsiP~l~~~lp----~~~~~~~~~~l~~~~~~~~~~~ 305 (972)
.++.+.+++ +.+|++++++ .|.+.|||||+|..|+| .+...+.++.+..+.++.
T Consensus 232 ---~Tl~a~~sl---------~~rpvk~~nfsd~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~~---- 295 (1096)
T KOG4427|consen 232 ---TTLAATFSL---------RLRPVKQPNFSDNLVEEFVSLILTVPALVCHLPSALPQALEHLSSLMLLDKILNI---- 295 (1096)
T ss_pred ---eehhhhhhh---------ccccccCCchHHHHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHHHHHHHHHH----
Confidence 346666655 2456777776 59999999999988874 567777778888887764
Q ss_pred HhhhcccCCccccCCchhHHHHHHHHHHhhhhhccCCCCcccchhhHHHHHHHHHhhCCCcccc---cccCC--------
Q 002076 306 VQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSS---RESSM-------- 374 (972)
Q Consensus 306 l~~~~~~~~~~~s~~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~v~v~~~LL~~lp~~~~~---~~~~~-------- 374 (972)
+.+.......+.+.++|+.+|+|||++++++ .++.+...+..-+++..++..|.+|-.++.+ +.+..
T Consensus 296 l~d~~~~ee~~tsme~~~~l~llgNiv~la~--is~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~wH~vlg~ 373 (1096)
T KOG4427|consen 296 LRDMENSEEQSTSMEGPSVLWLLGNIVHLAT--ISETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDWHPVLGW 373 (1096)
T ss_pred HHhhHhHHHhhcCCcccHhHHHHhhhheeee--cCcccccccccccchhhhHHHHHHHHHHHhhcccccceeeeehhhcc
Confidence 3443333333557889999999999999996 3333333333335778888888888554433 12211
Q ss_pred CCCCCCcCCCCCccccchhhHHHHHHHHhhHHHHHHHHHHHhh----------------------------hhcccCC--
Q 002076 375 VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFS----------------------------GFHLLRG-- 424 (972)
Q Consensus 375 ~~~~dd~~~~~~~~~~~~~~l~~ql~~~~~~~~l~~l~~~l~~----------------------------~i~~~~~-- 424 (972)
.+...|...++.+ ..+++|+.-+|+.+..|-+...+.. .+++.+.
T Consensus 374 ~s~~~ek~~n~~i-----~~v~~q~~mlw~~~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~lrk~~~~ 448 (1096)
T KOG4427|consen 374 TSNETEKGNNVKI-----SLVEKQLPMLWQWRLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRALRKSCVM 448 (1096)
T ss_pred ccCCCCCccchhH-----HHHHHHHHHHhhhhHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 1233334444444 6799999999997444433332211 1111000
Q ss_pred ---C-----------CCCCCCchhhhHHHHHHHHHHHhhhhchh--HHHHHHhhhhhhhHHHHHHHHHhhhcccCCC--C
Q 002076 425 ---P-----------HDEGPGDKEVAAVGAACAFLHVAFNTLPL--ECIMTVLAYRTELVQLLWHYMKRCHEIRKWP--F 486 (972)
Q Consensus 425 ---~-----------~~~~~~~~~~~~v~~~c~~~~~~l~~lp~--~~iL~~Laf~~~ll~~LW~~i~~~~~~~~~~--~ 486 (972)
. ++--.+++++..++.+|..|+++++|+.+ ..++++++|.+.+++++|.+|+..+++.+-. +
T Consensus 449 ~~~l~~v~ss~~~~~~~k~~s~~~v~lv~~iC~~y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~e~G~~~G~~~gs 528 (1096)
T KOG4427|consen 449 GPVLGPVPSSNMLSFCPKWNSSAEVLLVENICTAYDASLNTLWQMRLPILTGLCYLDNLLVNLWVNILELGPSPGPQPGS 528 (1096)
T ss_pred CCccCCCccchhhhccccccCcccceehhhhhhHHHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHHHhCCCCCCCCCc
Confidence 0 11113678899999999999999998875 5799999999999999999999988877622 1
Q ss_pred C----------C---CCCCC---CCCcchhhhhhHHhHhHHhhhccchhhhccCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 002076 487 L----------P---YLSGD---APGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLN 550 (972)
Q Consensus 487 l----------~---~~~~~---~~~~l~pl~lfc~~~s~~L~ildd~ef~~~~~p~~l~~l~~l~~~Lk~~~~~~l~~~ 550 (972)
- + .+.++ +....++|.+||++|.|+++|+||+|||++|.||+++++..++.+||.++|++||.+
T Consensus 529 ~~~~~~~k~~~ev~~~l~s~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~i~~g 608 (1096)
T KOG4427|consen 529 GQVNESTKDVLEVETLLGSPTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKGIWDG 608 (1096)
T ss_pred cccchhHHHHHhHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcc
Confidence 0 1 11111 123667899999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCCccCCCCCCCCCCchHHhhhhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcc-hhhhhhhhccccchhHh
Q 002076 551 PTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVN-DFFISQATIDGTRANEI 629 (972)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~L~~~~~r~~f~p~~~f~~~~~~-~~~~~~~~~~~~~~~~i 629 (972)
....+ +. ...-++.+++++|..||+|||||+|+|+++|+++++. ..|....+....++..+
T Consensus 609 ~v~ea-------------k~-----~t~~lF~S~h~~l~vLYeRDcRr~Fta~d~WL~pevkPs~f~~e~ek~~~~a~ll 670 (1096)
T KOG4427|consen 609 TVPEA-------------KQ-----LTTGLFDSAHRLLHVLYERDCRRPFTASDHWLIPEVKPSAFAAELEKVLPTADLL 670 (1096)
T ss_pred cchhh-------------hh-----HHHHHHHHHHHHHHHHHHhccCCCCCcchhhcCCCCChhHHHHHHHhhcccceeE
Confidence 33211 11 1122789999999999999999999999999998874 34444444455567788
Q ss_pred hhcCCcccchhhhHHHHHHHHHHHHHhcCC----CCCccc-eeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccC
Q 002076 630 LKQAPFLVPFTSRAKIFQSQLASVRQRHGS----HGVFTR-SRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELG 704 (972)
Q Consensus 630 l~~~Pfl~pf~~Rv~~f~~~~~~~~~~~~~----~~~~~~-~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G 704 (972)
+.++|++||+++||.+|+.++.+++...+. .....+ ..|+|||++|+||+|+||++.+...+|+.|+|+|+||+|
T Consensus 671 l~~mpHviP~edRv~lFR~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqG 750 (1096)
T KOG4427|consen 671 LTKMPHVIPHEDRVLLFREFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQG 750 (1096)
T ss_pred eccCCcccChHHHHHHHHHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccC
Confidence 999999999999999999999888754431 122223 589999999999999999999988999999999999999
Q ss_pred cccccccCCCCcHHHHHHHHHHhhcccCCCceecC-CCceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcH
Q 002076 705 VEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS-DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFAT 783 (972)
Q Consensus 705 ~~E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~-~~~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~ 783 (972)
++|||||.||++|||++++.|..|||++|||.+|+ |+.+||+|.|+ ..++|+++|+|+|||+|||+|+|++||+||++
T Consensus 751 l~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~~LyPSPts~-~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~ 829 (1096)
T KOG4427|consen 751 LDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDRRLYPSPTSY-HHENHLQLFEFVGRMLGKAVYEGIVVDVPFAS 829 (1096)
T ss_pred CcccccCccchHHHHHHHHHHHHhcccccccccCCCCceecCCchhh-hhhchhHHHHHHHHHHHHHHhcceEEecccHH
Confidence 99999999999999999999999999999999998 89999999996 68999999999999999999999999999999
Q ss_pred HHHHhhccCCC--CCCCccCCcHHHHHHHHHHHhhcCCcccceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHH
Q 002076 784 FFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIH 861 (972)
Q Consensus 784 ~f~k~Llg~~~--~l~DL~~lDp~l~~sL~~l~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~ 861 (972)
+|+.+++|... .+|+|.++|||+||||.++|+|+||+.||+|||+++++..|+..++||+|||++|+||++||.+|||
T Consensus 830 vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH 909 (1096)
T KOG4427|consen 830 VFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIH 909 (1096)
T ss_pred HHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHH
Confidence 99999999876 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHh
Q 002076 862 LVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIE 941 (972)
Q Consensus 862 ~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~ 941 (972)
.|++|++|+||++|+.||.+||.++|.|+||++|+|.|||+||+|++.+||++|||+||+|.|||+.+|++|+|||+|++
T Consensus 910 ~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~ 989 (1096)
T KOG4427|consen 910 AMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILA 989 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-CChhhhcccccCceEEecCCCCCCC
Q 002076 942 H-TSGKCMGVNCSLISWNITLSMNSFY 967 (972)
Q Consensus 942 ~-~s~ee~r~e~~~FL~FvTGs~~lP~ 967 (972)
. |++|||.+ ||+|||-++|=|+
T Consensus 990 ~dFt~eERkl----fLKFVTSCSrpPl 1012 (1096)
T KOG4427|consen 990 GDFTPEERKL----FLKFVTSCSRPPL 1012 (1096)
T ss_pred ccCChHHHHH----HHHHHhhcCCCcc
Confidence 7 99999888 9999999999885
No 2
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-136 Score=1179.82 Aligned_cols=886 Identities=36% Similarity=0.516 Sum_probs=699.1
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCchhHhh
Q 002076 17 GRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFF 96 (972)
Q Consensus 17 G~S~~e~~r~~lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~~~~~~~~~~~~~~~~~~~~~l 96 (972)
|+|++ .+||++|.||++||.+||++|||+++|+++|++||||++|++++...|++||.....+..+ .....++
T Consensus 1 g~~~~-~er~~~l~r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~fd~~~~~~~~~------e~~~~~~ 73 (1001)
T KOG0942|consen 1 GASSL-NERDNLLRRAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREEFDAVSTRSRGG------EELTKLA 73 (1001)
T ss_pred CCcch-hhHHHHHHHHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc------hhHHHHH
Confidence 78888 4899999999999999999999999999999999999999999999999999988866521 2245689
Q ss_pred hhheeEEecccccchHHHHHHHHHHHHHhhhcCCccccccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhccccCCC
Q 002076 97 RQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVT 176 (972)
Q Consensus 97 R~llFf~~~~~~~D~~RL~~lC~~ll~s~~~~~~~~~~~~~~~~~~e~~~~~~qiKkll~lC~~~L~~~~~~~~~~~~~~ 176 (972)
|+|+|||... +|.+||+|+|+.|+ ++....+.. + ..+|..|.|+++..|++ +.+++.+.+..
T Consensus 74 ~~L~~Fy~~~--~D~~rli~~~~nl~---~~~~~~i~~------s--~~~~~~~~k~l~~~c~~-~l~n~~~d~l~---- 135 (1001)
T KOG0942|consen 74 RLLVFFYETN--KDSERLIMVLQNLL---KQKTRLIEF------S--KRTRLTQLKLLLRKCQR-LLQNRNDDTLF---- 135 (1001)
T ss_pred HHHHHHhhcc--cccHHHHHHHHHHH---HHHHHhhhh------h--ccchHHHHHHHHHHHHH-HHHhhhhhhHH----
Confidence 9999999766 89999999999888 543333322 1 26789999999999998 66666544421
Q ss_pred CCCCCCchHHHHHHHHHhh-------cC--CchhHHHHHHHHHhcchHHHHHHHHHcCCCCcccccccCCcchHHHHHHh
Q 002076 177 PEESNTPPTLLLEAVVFLI-------DS--RLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTL 247 (972)
Q Consensus 177 ~~~~~~~~~~~L~~l~~lt-------~~--~~~w~~~i~~yL~~~g~y~~Lr~ll~~~~~~~~~~~~~~~~~~l~~ll~l 247 (972)
.+.| .++++.+++.. |. ..+|.+.|.+|++.++||..+|.+++.+.++....+..+..+.+++++.+
T Consensus 136 ---~~~p-~~ll~~~~~~~~~~~~~~d~~~~~~~v~~i~ay~~k~~y~~~lr~l~~~~~~s~~~~s~~~n~~~~e~ll~l 211 (1001)
T KOG0942|consen 136 ---QAIP-RRLLESFTSHSSLVRLLKDLGLFNQEVHLILAYLGKRTYYTSLRALLNSKKLSLLGRSFETNVLPLESLLSL 211 (1001)
T ss_pred ---HHHH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhccccchhhHHHHhhhccccccccccCCCCChHHHHHHH
Confidence 1334 56777776644 33 66899999999999999999999999998887777888888999999999
Q ss_pred hhhccccCCCcCCCCCCcchhhhhhccccchhhcchhhHHHHhhcCCchhhHHHHHHHHhhhcccCCccccCCchhHHHH
Q 002076 248 IIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACL 327 (972)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~f~~~IlsiP~l~~~lp~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~s~~~p~~~~l 327 (972)
+..+....++.|+.++..++|...|++.|.++..+|. . ..+.+ ++. ..+..++.+.++
T Consensus 212 vl~~~~~~k~~c~~~d~~~sf~~~~la~d~~~~~~~~---~-----~~~~~-----------~~~---~~~~~~~~~~~~ 269 (1001)
T KOG0942|consen 212 VLLPLRLAKTACTNGDLNFSFTILILAKDHISPIFCP---F-----FLPLF-----------AAM---KTSDPLELWEVA 269 (1001)
T ss_pred hccccchhccccccccccccchHHHHhcccchhhccc---c-----chhHH-----------hhh---hccccchHHHHH
Confidence 9998877788999999989999999999999888751 1 11111 111 233556667777
Q ss_pred HHHHHHhhhhh---ccCCCCcccchhhH-HHHHHHHHhhCCCccccc-cc--CCCCCCCCcCCCCCccccchh--hHHHH
Q 002076 328 LGNILETAGVA---LSQPDCSFEMGVDL-AAITTFLLKALPPIKSSR-ES--SMVSDDDMTAGDEVMEPVINR--DLEKQ 398 (972)
Q Consensus 328 L~Nl~~l~~~~---l~~~~~~~~~~~~~-v~v~~~LL~~lp~~~~~~-~~--~~~~~~dd~~~~~~~~~~~~~--~l~~q 398 (972)
+++.+..+... ++++.+........ +...+.+.+-|| .++.. .+ ....+|||+..++.-+.+-+. .-..|
T Consensus 270 ~~~al~s~~~i~s~~~~~~l~~l~q~~~~~~y~~~l~~~L~-pv~~~s~~~r~~~~~dd~~es~d~~~~v~n~l~~~~~~ 348 (1001)
T KOG0942|consen 270 LESALESAGSIKSGVSQNVLVLLHQSYLLLQYFNFLAEFLP-PVSHESAIMRHLSVKDDDEESDDEDKSVPNHLKPYCEQ 348 (1001)
T ss_pred HHHHHhhhcchhhcccchhhhhhhhhhHHHHHHHHHHHHcC-CcCCCCcchhhccccchhhhccccchhhhhhchHHHHh
Confidence 77766554321 12222222221122 223444444445 22221 11 011112222111111101111 22333
Q ss_pred HHHHhhHHHH--------HHHHHHHhhhhcccCCCCCCCCCchhhhHHHHHHHHHHHhh----hhchhHHHHHHhhhhhh
Q 002076 399 ITSAIDSRFL--------LQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAF----NTLPLECIMTVLAYRTE 466 (972)
Q Consensus 399 l~~~~~~~~l--------~~l~~~l~~~i~~~~~~~~~~~~~~~~~~v~~~c~~~~~~l----~~lp~~~iL~~Laf~~~ 466 (972)
.......+.. ++.++.+.+..+. +.+...+++++|.+||+++ +..|..++++.+||.++
T Consensus 349 ~~~~~~~r~~~cl~~~~~~~qv~~iis~~~~---------~~~~~~~i~~~~~~~~sl~~~~~~~~p~~rll~~laf~~~ 419 (1001)
T KOG0942|consen 349 MSASNSSRRAACLYANLEKRQVDEIISSTDY---------DKAFEDLIANLNTFCHSLYAQIAKLVPLGRLLYILAFSPK 419 (1001)
T ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHhhhHH
Confidence 3333333333 2333333332222 3344556777776666655 58889999999999999
Q ss_pred hHHHHHHH--HHhhhcccC-CCCCC----CCCCCC------CCcchhhhhhHHhHhHHhhhccchhhhccCCCCCHHHHH
Q 002076 467 LVQLLWHY--MKRCHEIRK-WPFLP----YLSGDA------PGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIR 533 (972)
Q Consensus 467 ll~~LW~~--i~~~~~~~~-~~~l~----~~~~~~------~~~l~pl~lfc~~~s~~L~ildd~ef~~~~~p~~l~~l~ 533 (972)
++..+|.. +.++..+.. +.+++ ....++ .+.++.+.+||.+|+|+|.+++|+|||+..++.....+.
T Consensus 420 ~~~~~~f~~~~~~~s~~~~~~s~vp~L~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~L~s~~d~Ef~e~~~~~~~~~~m 499 (1001)
T KOG0942|consen 420 LNAELWFTNCLARRSESMADGSSVPQLIFISFGVTPEFLLDDRIIPLLLLFSTMFRRMLYSGHDKEFMEDPKTLWKPVMM 499 (1001)
T ss_pred HHHHHHHHHHHHHHHhhccccccchhHHhhccCCchhhccccchhhHHHHHHHHHHhhhhcccHHHHhcCccccchhhHH
Confidence 99999954 888877765 33443 222222 223444578999999999999999999998776666333
Q ss_pred -HHHHHHHHHHHHHhhcCCCCCCCC-CCccCCCCCCCCCCc--hHHhhhhhHHHHHHHHHHhhhhhcCCCCCCC---CCC
Q 002076 534 -HLIVILREALWHLLWLNPTSHPNV-GKSVSSPPPANKMLP--AEAIQHRVSTVASEVLSQLQDWNNRREFVPP---SDF 606 (972)
Q Consensus 534 -~l~~~Lk~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lL~~L~~~~~r~~f~p~---~~f 606 (972)
.++.++|.+....+|..+...++. .++++.+. .++.+ .+...+...++..+++.++.+||.|..|+|+ ...
T Consensus 500 ~e~i~~lk~l~d~~l~~~~la~~~t~~~~~g~~~--~r~~~~~~~~~~n~~~~v~~e~l~~~~~rd~r~~f~~~~e~~dl 577 (1001)
T KOG0942|consen 500 PELILLLKYLKDILLWLVPLAFPNTREKVVGITE--SRRMPLRQRRRWNGRLQVVRELLTELSERDNRKEFCPSKERPDL 577 (1001)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccCcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc
Confidence 677888888888889877666554 23333322 23334 2223344678999999999999999999998 245
Q ss_pred CCCCcchhhhhhhhccccchhHhhhcCCcccchhhhHHHHHHHHHHHHHhcCCCCCccce---eEEecCCcHHHHHHHHH
Q 002076 607 HADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRS---RFRIRRDHILEDAYSQM 683 (972)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~il~~~Pfl~pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~---~l~VrR~~ileda~~~l 683 (972)
-++..++.+.........|+..|++++||++||+.||++|+..+..+|++.+.+++|.+. .++|||++|+||||+++
T Consensus 578 ~sd~~~e~~~~l~~~lr~R~l~IL~e~PF~vPF~~RVklfq~lla~dKq~~~~~~~F~~g~s~~~tIRRd~iyeDAfd~f 657 (1001)
T KOG0942|consen 578 KSDDENELFNPLPSFLRFRALCILKEIPFFVPFEERVKLFQRLLALDKQRHGGDGPFGMGFSPSATIRRDHIYEDAFDAF 657 (1001)
T ss_pred cccchHHhhcchHhhhhhHHHHHHHcCCeeechHHHHHHHHHHHHHHHHhhcCCCCccCCCCccEEEehhhhHHHHHHhc
Confidence 555556565555555667899999999999999999999999999999999887777665 89999999999999999
Q ss_pred hcCChhhccCceEEEEeeccCcccccccCCCCcHHHHHHHHHHhhcccCCCceecCCCceeeCCCCCCChhH-HHHHHHH
Q 002076 684 STMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQ-HLQFFHF 762 (972)
Q Consensus 684 ~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~~~l~pnp~s~~~~~~-~l~~f~f 762 (972)
++.+..++|..++|+|+||+|++|+||||||++|||++.++++.|||+||+|++|.++.+||||++.+..+. ++++|+|
T Consensus 658 ~p~~e~dlk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~~lLYPNp~~~~l~~~~~lkhy~F 737 (1001)
T KOG0942|consen 658 SPKGEPDLKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETEDHLLYPNPTAAMLLDVDCLKHYYF 737 (1001)
T ss_pred CccCCcccccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeecccceecCCCCchhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877655 8999999
Q ss_pred HhHHHHHHHhcCCccccCCcHHHHHhhccCCC--CCCCccCCcHHHHHHHHHHHhhcC-CcccceeeEEEEecccCccee
Q 002076 763 LGILLAKAMFEGILVDIPFATFFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEA-DISELELYFVILNNEYGEQTE 839 (972)
Q Consensus 763 lG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~--~l~DL~~lDp~l~~sL~~l~~~~~-dv~~l~L~Ft~~~~~~g~~~~ 839 (972)
+|+++|||||+|+++|+|||.||++||+|.+. +++||.++||++|++|.+||+|+| |+++|+|+|||.++++|+.++
T Consensus 738 LGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~eL~L~FtVv~~e~G~~~v 817 (1001)
T KOG0942|consen 738 LGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISELQLDFTVVNSELGERQV 817 (1001)
T ss_pred HHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhhccceEEEecccccccee
Confidence 99999999999999999999999999999988 899999999999999999999998 899999999999999999999
Q ss_pred EeccCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcc
Q 002076 840 EELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQN 919 (972)
Q Consensus 840 ~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~ 919 (972)
|||+|||++|+||++|+.+|||+|+||+||.+|++|+.||++||..|||++|++||++.|||.||+|.+++||++|||+|
T Consensus 818 VeLkPnGs~i~VTneNvi~YihLVsnY~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~ 897 (1001)
T KOG0942|consen 818 VELKPNGSKIRVTNENVIEYIHLVSNYKLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKN 897 (1001)
T ss_pred EEeccCCccceeechhhhhhhHHhhhhHHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeCCCcCCCCHHHHHHHHHHhhCChhhhcccccCceEEecCCCCCCCCC
Q 002076 920 TNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 920 t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
|+|.|||+++||+|++|||||++|+.|++|. |||||||.+|=|+-+
T Consensus 898 teY~Ggy~~~hp~Iv~FWeVl~~F~~edKr~----fLKFVTscsRpPllG 943 (1001)
T KOG0942|consen 898 TEYAGGYSPDHPTIVMFWEVLEEFSDEDKRK----FLKFVTSCSRPPLLG 943 (1001)
T ss_pred ccccCCCCCCCCchhHHHHHHHhcchHHHHH----HHHHHhcCCCccccc
Confidence 9999999999999999999999999987665 999999999999643
No 3
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-76 Score=681.73 Aligned_cols=414 Identities=29% Similarity=0.432 Sum_probs=357.3
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccCCCCCCCCCCchHHhhhhhHHHHHHHHHHhhhhhcC
Q 002076 518 EEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNR 597 (972)
Q Consensus 518 ~ef~~~~~p~~l~~l~~l~~~Lk~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~L~~~~~r 597 (972)
++||.+. ..+....++++++..+-.++-. +.. .. ..+..+++++.+++.||..|+|
T Consensus 362 ~~~~~~~---~~k~~~~~v~~f~~~V~~~l~~-----~~~-------------~~---~e~~~i~~~l~~~~lly~vN~~ 417 (850)
T KOG0941|consen 362 VEYWNQL---SPKYFRKLVSMFKEAVTEILKF-----SKE-------------LA---EENKGIRSALKLLELLYKVNCR 417 (850)
T ss_pred HHHHHHh---chhhcchhhhchhhHHHHhhhc-----cch-------------hh---hhccchhhHHHHHHHHHHHhcc
Confidence 7788775 6667788888998888777611 000 00 0122566888899999999999
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhccc----cchhHhhhcCCcccchhhhHHHHHHHHHHH----HHhc-------CCC-C
Q 002076 598 REFVPPSDFHADGVNDFFISQATIDG----TRANEILKQAPFLVPFTSRAKIFQSQLASV----RQRH-------GSH-G 661 (972)
Q Consensus 598 ~~f~p~~~f~~~~~~~~~~~~~~~~~----~~~~~il~~~Pfl~pf~~Rv~~f~~~~~~~----~~~~-------~~~-~ 661 (972)
++.+|.+.||++.+++...-+.+... ...-+.+++|||+++--+|+.+++...... ++.. +.. .
T Consensus 418 ~~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~~fsfc~ypFIL~~~aK~~lL~yD~rlrM~~~~~~a~~~s~~~~~~~~ 497 (850)
T KOG0941|consen 418 KGLIPYEEFYNEELNDRIDMKEDYVHWRTKQMNCFSFCNYPFILNAVAKIELLQYDARLRMESERRKAFLSSLFQGLQLL 497 (850)
T ss_pred CCCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcccceeecCCeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999988876654444321 111468899999999999999998644211 1110 111 1
Q ss_pred CccceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcccccccCCCCcHHHHHHHHHHhhcccCCCceecCC-
Q 002076 662 VFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD- 740 (972)
Q Consensus 662 ~~~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~- 740 (972)
+-+...++|||++|++||+++|+..+..|+||+|+|+|.| |+|+|+|||+||||.++++|+|+|+||||+...+
T Consensus 498 ~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~g-----E~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s 572 (850)
T KOG0941|consen 498 VSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVG-----EEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEES 572 (850)
T ss_pred CCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECC-----CcccccCchHHHHHHHHHHHHcCccccCeeccccc
Confidence 2356689999999999999999999999999999999999 7899999999999999999999999999998775
Q ss_pred CceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcC-C
Q 002076 741 HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEA-D 819 (972)
Q Consensus 741 ~~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~-d 819 (972)
+.+|.+|.... + -.+|+++|++||+||||..++|+|||.++||||++.+++++||.++.|.+|+||+.|++|+| |
T Consensus 573 ~~~WF~~~~~~---~-~~~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd 648 (850)
T KOG0941|consen 573 SLLWFNPSPFE---E-EKQYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDD 648 (850)
T ss_pred ceeeecCCCCC---c-cceeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccc
Confidence 46787776541 1 23699999999999999999999999999999999999999999999999999999999998 7
Q ss_pred ccc-ceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHH
Q 002076 820 ISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEH 898 (972)
Q Consensus 820 v~~-l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~ 898 (972)
++| ++++|++..+.+|...+++|+|||.+|+||++||++||.+|++|.+|++|++|++||++||++||+.+.+++|.|+
T Consensus 649 ~ed~f~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~pe 728 (850)
T KOG0941|consen 649 VEDVFDLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPE 728 (850)
T ss_pred hhhheeeEEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHH
Confidence 765 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhhcccccCceEEecCCCCCCCCC
Q 002076 899 ELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 899 EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
||+.+|||+++ +||+.|+++|+|+|||+++||+|+|||++++.|+.++|+. ||+|+|||-|+|+.+
T Consensus 729 El~~li~G~~~-~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkk----fL~F~TGsdRipv~G 794 (850)
T KOG0941|consen 729 ELEKLICGSED-YDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKK----FLQFLTGSDRIPVGG 794 (850)
T ss_pred HHHHHHhCCCc-cCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhh----heEeecCCCccccCC
Confidence 99999999985 9999999999999999999999999999999999987655 999999999999876
No 4
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-69 Score=652.99 Aligned_cols=295 Identities=34% Similarity=0.586 Sum_probs=281.9
Q ss_pred cceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcccccccCCCCcHHHHHHHHHHhhcccCCCceecCC--C
Q 002076 664 TRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--H 741 (972)
Q Consensus 664 ~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~--~ 741 (972)
+..+|+|||+++++|+++++...++.++|+.|+|+|.| |+|||+||++||||..+++++|+|+|++|..+.+ .
T Consensus 513 ~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~-----EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~~ 587 (872)
T COG5021 513 PYLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVG-----EEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLY 587 (872)
T ss_pred cceEEEEecccchHHHHHHHHHhchhhhcceEEEEecC-----cccccCCccchHHHHHHhHHhcCCcccceeeeccccc
Confidence 34589999999999999999999988888889999999 8999999999999999999999999999998664 4
Q ss_pred ceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcCCcc
Q 002076 742 LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADIS 821 (972)
Q Consensus 742 ~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~dv~ 821 (972)
.++|||.+. ++++|+.+|+|+|++||+|||+++.+|++||.+|||+|+|++++++|+.++||++|++|.+|++++.|..
T Consensus 588 ~~~~n~~s~-~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~ 666 (872)
T COG5021 588 TLPINPLSS-INPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDET 666 (872)
T ss_pred ccCcCcccc-CCHHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcc
Confidence 677899887 6899999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHH
Q 002076 822 ELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQ 901 (972)
Q Consensus 822 ~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~ 901 (972)
.+++||++..+.+|+.++|||||||++|+||++||.+||++|++|+++++|++|++||..||.+|||++|+.||++.||+
T Consensus 667 ~l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe 746 (872)
T COG5021 667 ILDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELE 746 (872)
T ss_pred eeeeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhhcccccCceEEecCCCCCCCCC
Q 002076 902 LLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 902 ~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
.||||.+++||++|||+||.|. ||++++|+|+|||++|++|+.|||+. |||||||++|+|+.+
T Consensus 747 ~LI~G~~e~iDidd~K~~T~Y~-GY~~~s~~I~wFWeii~~f~~eer~k----lLQFvTGtsriPi~G 809 (872)
T COG5021 747 LLIGGIPEDIDIDDWKSNTAYH-GYTEDSPIIVWFWEIISEFDFEERAK----LLQFVTGTSRIPING 809 (872)
T ss_pred HHHCCCCccccHHHHhhccccc-ccccCCcHHHHHHHHHHHhCHHHHhh----hheeccCCCCCCCCC
Confidence 9999999779999999999997 79999999999999999999987654 999999999999875
No 5
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=5.1e-65 Score=577.73 Aligned_cols=292 Identities=41% Similarity=0.643 Sum_probs=278.8
Q ss_pred eEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcccccccCCCCcHHHHHHHHHHhhcccCCCceecCC--Ccee
Q 002076 667 RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLY 744 (972)
Q Consensus 667 ~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~--~~l~ 744 (972)
+++|||++|++|+++++...++.+++++++|+|+| |.|+|+|||+||||+++++|+++|++|||..+++ +.+|
T Consensus 2 ~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~g-----E~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~ 76 (352)
T cd00078 2 KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVG-----EEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLY 76 (352)
T ss_pred eEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECC-----CCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEE
Confidence 68999999999999999999888999999999998 8899999999999999999999999999999887 7899
Q ss_pred eCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcCCcccce
Q 002076 745 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELE 824 (972)
Q Consensus 745 pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~dv~~l~ 824 (972)
|||.+. ..++++++|+++|+++|+||++|.+++++||++|||+|+|.+++++||+++||++|++|++|+++++++++++
T Consensus 77 ~~p~~~-~~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~l~ 155 (352)
T cd00078 77 PNPSSF-ADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLE 155 (352)
T ss_pred eCCCcc-cchhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhc
Confidence 999986 3456889999999999999999999999999999999999999999999999999999999999888788999
Q ss_pred eeEEEEecc-cCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHH
Q 002076 825 LYFVILNNE-YGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLL 903 (972)
Q Consensus 825 L~Ft~~~~~-~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~L 903 (972)
|+|++..+. .|...++||+|||++++||.+|+++||+++++|+++++++.|++||++||++|+|.+++++|+|+||+.+
T Consensus 156 l~F~~~~~~~~~~~~~veL~~~G~~~~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~l 235 (352)
T cd00078 156 LTFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235 (352)
T ss_pred ceeEEEEeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHH
Confidence 999998776 8888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhhcccccCceEEecCCCCCCCCC
Q 002076 904 ISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 904 i~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
+||.+ +||+++|++||.|+|||+++|++|+|||+||++||+|||+. ||+|+|||+++|.++
T Consensus 236 vcG~~-~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~----fL~F~TG~~rlP~~G 296 (352)
T cd00078 236 ICGSE-DIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKK----FLQFVTGSSRLPVGG 296 (352)
T ss_pred hCCCC-CCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHH----hheeecCCCCCCCcc
Confidence 99996 59999999999999999999999999999999999987665 999999999999865
No 6
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=4.3e-63 Score=563.31 Aligned_cols=323 Identities=31% Similarity=0.551 Sum_probs=301.2
Q ss_pred hHhhhcCCcccchhhhHHHHHHHHHHHHHhcCCCCCccceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcc
Q 002076 627 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVE 706 (972)
Q Consensus 627 ~~il~~~Pfl~pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~ 706 (972)
..++.++|-+++|+.|.++|+..++..... + ....+.|+|+.+++|+++++...+++++|.++.|+|.|
T Consensus 331 f~ll~~~~~ll~F~~Kr~yf~r~L~~~~~~---~---~~~~v~v~R~~v~~~S~~~~~~~s~~e~~~rl~I~f~g----- 399 (720)
T KOG0939|consen 331 FSLLLKNPMLLDFDNKRKYFKRELRKEHAS---S---EKLAVLVRRALVLEDSFRALLYKSPEELKTRLEVTFQG----- 399 (720)
T ss_pred hhhheecCcceecccHHHHHHHHHHHhhcc---C---CcceEEEeHHHHHHHHHHHHHhCCHHHHhcceEEEEec-----
Confidence 578889999999999999999988654433 1 12378999999999999999999999999999999999
Q ss_pred cccccCCCCcHHHHHHHHHHhhcccCCCceecCCC--ceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHH
Q 002076 707 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 784 (972)
Q Consensus 707 E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~~--~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~ 784 (972)
|+|+|+||++||||..+++++|||+|+||...++. .+.|||+|. .+++||.+|+|.||++|||||+|.++++.|.+.
T Consensus 400 EEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~d~tt~~pn~~s~-~np~hLs~fkf~GriigKal~d~ql~~c~ftrs 478 (720)
T KOG0939|consen 400 EEGSDAGGVTREWLQLLSREIFNPRYALFTTVGSDQTTFHPNPNSY-VNPEHLSYFKFVGRIIGKALFDGQLLECYFTRS 478 (720)
T ss_pred ccccccchHHHHHHHHHHHHHcCCCcceEEEcCCCceEEeeCCccc-CChhhhhHHHhhHHHHHHHHhcchhhhheeeHH
Confidence 78999999999999999999999999999987655 677999987 688999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcCCccc-ceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHHH
Q 002076 785 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLV 863 (972)
Q Consensus 785 f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~dv~~-l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~ 863 (972)
|||.++|.+++..|+++.||++|++|.+|++ +|+++ ++++|+...+.+|...++||+|||++|.||++||.+||+++
T Consensus 479 fyk~ilG~~v~~~d~es~DP~y~k~l~~il~--ndis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~~yv~lv 556 (720)
T KOG0939|consen 479 FYKHILGLPVTYHDMESADPEYYKSLVWILK--NDISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQEYVQLV 556 (720)
T ss_pred HHhhccCCceeeeehhhcChHHhhceeehhc--CCcccceeEEEEEeeccccccceeecccCCCceeeccccHHHHHHHH
Confidence 9999999999999999999999999999986 45543 89999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhC
Q 002076 864 SNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHT 943 (972)
Q Consensus 864 ~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~ 943 (972)
++|||..+|++|++||..||+++||...+++|++.||+.||||-++ ||++|||+||+|. ||++++++|+|||++|++|
T Consensus 557 ~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpe-idvdd~k~nt~y~-~~~~~~~~i~wFWrav~sf 634 (720)
T KOG0939|consen 557 TQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPE-IDVDDLKANTEYL-GYTKASSVIQWFWRAVRSF 634 (720)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCc-ccHHHHHhhhhhh-cccccchHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999985 9999999999997 6999999999999999999
Q ss_pred ChhhhcccccCceEEecCCCCCCCCC
Q 002076 944 SGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 944 s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
+++|| -||||||||++++|+.+
T Consensus 635 ~~eer----aklLqFvTGtSkvP~~G 656 (720)
T KOG0939|consen 635 DQEER----AKLLQFVTGTSKVPLGG 656 (720)
T ss_pred cHHHH----HhhHeeecccccCCccc
Confidence 99765 46999999999999875
No 7
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=7.3e-61 Score=538.54 Aligned_cols=273 Identities=38% Similarity=0.616 Sum_probs=252.6
Q ss_pred ChhhccCc-eEEEEeeccCcccccccCCCCcHHHHHHHHHHhhcccCCCceecCC-CceeeCCCCCCChhHHHHHHHHHh
Q 002076 687 SEEDLRGA-IRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-HLLYPNPGSGMIHEQHLQFFHFLG 764 (972)
Q Consensus 687 ~~~~lk~~-l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~-~~l~pnp~s~~~~~~~l~~f~flG 764 (972)
+..++|++ ++|+|+| |+|+|+|||+||||+++++++++|++|||+.+++ +.+||||.+....++++++|+++|
T Consensus 3 ~~~~~~~~~l~V~F~g-----E~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~~~~~~~p~~~~~~~~~l~~f~~~G 77 (336)
T smart00119 3 SDEDLKKSVLEIEFEG-----EEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDYLLYPNPRAFFANPEHLAYFRFIG 77 (336)
T ss_pred ChHHhCCCeEEEEECC-----CCCccCCchHHHHHHHHHHHHhCcccCCceEcCCCCeEEeCCCccccchHHHHHHHHHH
Confidence 34678888 9999999 7899999999999999999999999999998876 489999988655577899999999
Q ss_pred HHHHHHHhcCCccccCCcHHHHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcCCcccceeeEEEE-ecccCcceeEecc
Q 002076 765 ILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVIL-NNEYGEQTEEELL 843 (972)
Q Consensus 765 ~llG~Al~~~~~ldl~f~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~dv~~l~L~Ft~~-~~~~g~~~~~eL~ 843 (972)
+++|+||++|.+++++||++|||+|+|.+++++||+++||++|++|++|+...+..++++++|++. ...+|...++||+
T Consensus 78 ~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~~~~~l~F~~~~~~~~g~~~~~eL~ 157 (336)
T smart00119 78 RVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTSEELDLTFSIVLTSEFGQVKVVELK 157 (336)
T ss_pred HHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCcccccceEEEEeeecCCCcceEecC
Confidence 999999999999999999999999999999999999999999999999953222345699999854 3457888999999
Q ss_pred CCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeC
Q 002076 844 PGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYV 923 (972)
Q Consensus 844 p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ 923 (972)
|||++++||.+||++||+++++|+++++++.|++||++||++|+|.+++++|+|+||+.++||.++ ||+++|++||+|+
T Consensus 158 ~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-i~~~~l~~~~~~~ 236 (336)
T smart00119 158 PGGSNIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPE-IDVDDLKSNTEYK 236 (336)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCC-CCHHHHhhheEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999985 9999999999999
Q ss_pred CCcCCCCHHHHHHHHHHhhCChhhhcccccCceEEecCCCCCCCCC
Q 002076 924 GGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 924 ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
+||++++++|+|||+||++||++||+. ||+|+|||+++|.++
T Consensus 237 ~g~~~~~~~i~~Fw~vl~~~s~ee~~~----fL~F~TG~~rlP~~G 278 (336)
T smart00119 237 GGYSENSQTIKWFWEVVESFTNEERRK----LLQFVTGSSRLPVGG 278 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHH----hheeccCCCCCCCCc
Confidence 999999999999999999999987665 999999999999875
No 8
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-59 Score=510.83 Aligned_cols=353 Identities=24% Similarity=0.377 Sum_probs=308.4
Q ss_pred CCCCCCCCCCCcchhhhhhh--------hccccchhHhhhcCCcccchhhhHHHHHHHH---HHH----HHhc-----C-
Q 002076 600 FVPPSDFHADGVNDFFISQA--------TIDGTRANEILKQAPFLVPFTSRAKIFQSQL---ASV----RQRH-----G- 658 (972)
Q Consensus 600 f~p~~~f~~~~~~~~~~~~~--------~~~~~~~~~il~~~Pfl~pf~~Rv~~f~~~~---~~~----~~~~-----~- 658 (972)
.+|.+.|++.++......|. ...+.|...+.+.|||+|||++|..+|+... ... ++.. +
T Consensus 133 ~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~~~~s 212 (621)
T KOG0170|consen 133 IVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGSKDGS 212 (621)
T ss_pred CCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCCCCCC
Confidence 57888888877665544332 3467899999999999999999999998642 111 1111 1
Q ss_pred ------CCCCccceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcccccccCCCCcHHHHHHHHHHhhcccC
Q 002076 659 ------SHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQY 732 (972)
Q Consensus 659 ------~~~~~~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~e~~~p~~ 732 (972)
..++..|.+++|.|++|++.|.+.|..++ .-+..|+|+|.+|+| . |-||+-||++.+++++..++.
T Consensus 213 ~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~yg--ss~~vLEIEY~~EvG-----T-GLGPTLEFYtlVSk~fq~~sL 284 (621)
T KOG0170|consen 213 NDEALQQLGRLTRKKLRISRKTILASALKVMEKYG--SSKAVLEIEYEEEVG-----T-GLGPTLEFYTLVSKEFQRASL 284 (621)
T ss_pred chHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhc--CCcceEEEEeccccc-----c-CCCcceeeHHHHHHHHhhccc
Confidence 12456778999999999999999999986 357899999999655 4 889999999999999999999
Q ss_pred CCceecC----------C-------CceeeCCCCCCC----hhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhcc
Q 002076 733 GLFKETS----------D-------HLLYPNPGSGMI----HEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQ 791 (972)
Q Consensus 733 glF~~~~----------~-------~~l~pnp~s~~~----~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg 791 (972)
|||+..+ + .++||.|..... +++.+++|.++|+++||||++|+++|+||+++|||.++|
T Consensus 285 gmWR~~s~s~~~~k~~~~t~~v~~~sgLFp~P~~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~ 364 (621)
T KOG0170|consen 285 GMWRCNSVSYRSGKPQENTKDVYITSGLFPRPWPPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILG 364 (621)
T ss_pred cccccCceeeccCCCCCCcchhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhc
Confidence 9999741 1 479998876421 345789999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHhh----------cC--------------CcccceeeEEEEecccCcceeEeccCCCC
Q 002076 792 KYNYLNDLPSLDPELYRHLIFLKHY----------EA--------------DISELELYFVILNNEYGEQTEEELLPGGK 847 (972)
Q Consensus 792 ~~~~l~DL~~lDp~l~~sL~~l~~~----------~~--------------dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~ 847 (972)
++.+..|+..+||++.++|..|... -| .||||+|+||+++. ..+||+|||.
T Consensus 365 q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~-----p~ieL~p~g~ 439 (621)
T KOG0170|consen 365 QELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGF-----PDIELIPGGA 439 (621)
T ss_pred CCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCC-----CCeeeccCCC
Confidence 9999999999999999999988521 12 25899999999864 3789999999
Q ss_pred ccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcC
Q 002076 848 NIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYH 927 (972)
Q Consensus 848 ~i~VT~~Nk~eYi~~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~ 927 (972)
+++||..|.+|||+.|+++.++++|.+|++||+.||.+|+|.+.|++|+|+||..|+||..+.|+++.|.+|++++|||+
T Consensus 440 ~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT 519 (621)
T KOG0170|consen 440 NKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYT 519 (621)
T ss_pred CCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCChhhhcccccCceEEecCCCCCCCCC
Q 002076 928 SVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 928 ~~~~~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
.++|+|+.|.+|+..|+.||||. ||||||||||||.++
T Consensus 520 ~~Sp~i~~li~ils~f~~~qQR~----FLQFvTGSprLPiGG 557 (621)
T KOG0170|consen 520 MDSPIIHDLISILSAFDKEQQRL----FLQFVTGSPRLPIGG 557 (621)
T ss_pred CCCcHHHHHHHHhhhhchHHHHH----HHHHhcCCCCCCCCc
Confidence 99999999999999999999887 999999999999886
No 9
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=3.3e-47 Score=426.82 Aligned_cols=245 Identities=35% Similarity=0.544 Sum_probs=210.1
Q ss_pred HHHHHHhhcccCCCceecCC-CceeeCCCCC------CChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhc-cC
Q 002076 721 ENITRAAFDVQYGLFKETSD-HLLYPNPGSG------MIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLK-QK 792 (972)
Q Consensus 721 ~~l~~e~~~p~~glF~~~~~-~~l~pnp~s~------~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Ll-g~ 792 (972)
+++++|+|+|++|||..+++ +.+||||... ...+.++++|+++|+++|+||++|.+++++||++|||+|+ |.
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~~k~l~~g~ 80 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNNGLFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAFWKYLLSGE 80 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTTCEEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHHHHHHT-T-
T ss_pred CHHHHHhcCccCCCceEcCCCCEEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHHHHHHhcCC
Confidence 57999999999999976665 5577887621 1234678999999999999999999999999999999999 99
Q ss_pred CCCCCCccCCcHHHHHHHHHHHhhcC---CcccceeeEEEEecc-cCcceeEeccCCCCccccChhhHHHHHHHHHHHHH
Q 002076 793 YNYLNDLPSLDPELYRHLIFLKHYEA---DISELELYFVILNNE-YGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRL 868 (972)
Q Consensus 793 ~~~l~DL~~lDp~l~~sL~~l~~~~~---dv~~l~L~Ft~~~~~-~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l 868 (972)
+++++|++++||+++++|++|++++. ++++++++|+++.+. .|...++||+|||++++||.+||.+||+++++|++
T Consensus 81 ~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l 160 (317)
T PF00632_consen 81 PLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRL 160 (317)
T ss_dssp ---HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHH
T ss_pred CCccccchhcCchhhcchhhheeccccccceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhc
Confidence 99999999999999999999997653 467899999987543 46667899999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhh
Q 002076 869 NFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCM 948 (972)
Q Consensus 869 ~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~ 948 (972)
+++++.|++||++||.+|+|..++++|+|+||+.++||.++.||+++|+++|+|++||++++++|+|||+||++||++||
T Consensus 161 ~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~ 240 (317)
T PF00632_consen 161 NESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEER 240 (317)
T ss_dssp TTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHH
T ss_pred ccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHh
Confidence 99999999999999999999999999999999999999874499999999999999999999999999999999999875
Q ss_pred cccccCceEEecCCCCCCCCC
Q 002076 949 GVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 949 r~e~~~FL~FvTGs~~lP~~~ 969 (972)
+. ||+|+|||+++|.++
T Consensus 241 ~~----fL~F~TG~~~lP~~G 257 (317)
T PF00632_consen 241 RK----FLRFVTGSSRLPPGG 257 (317)
T ss_dssp HH----HHHHHHSSSSB-TTG
T ss_pred he----eEEEecCCCCCCccc
Confidence 55 999999999999865
No 10
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-41 Score=375.96 Aligned_cols=289 Identities=30% Similarity=0.509 Sum_probs=273.0
Q ss_pred cceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcccccccCCCCcHHHHHHHHHHhhcccCCCceecCCC-c
Q 002076 664 TRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH-L 742 (972)
Q Consensus 664 ~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~~-~ 742 (972)
...+++|+|++++||+|+++...++.++|+.+.+.|.+ |+|.|.||+.||||..+++++|+|-+++|..+.+. .
T Consensus 15 ~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~-----ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~~t 89 (358)
T KOG0940|consen 15 QQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKG-----EEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYT 89 (358)
T ss_pred ceeEEEechhhhHHHHHHHHhCCCchhhhhcceeeccc-----ccccccCCCCcceeeeeccccCCcceeeeeecccccc
Confidence 34589999999999999999999999999999999999 78999999999999999999999999999998884 8
Q ss_pred eeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcCCccc
Q 002076 743 LYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE 822 (972)
Q Consensus 743 l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~dv~~ 822 (972)
++.+|.+. ..++|+.+|.|+|+.+|+|++++..++-- -.+|||.+++++.+++|.+.+|++.|+++.+++++ |+..
T Consensus 90 lq~~P~sg-~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~en--~~~~ 165 (358)
T KOG0940|consen 90 LWLNPRSG-VNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIREN--DPTN 165 (358)
T ss_pred cccCCccC-CCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchhhcCccccccccccccC--Cccc
Confidence 99999998 78899999999999999999999999988 99999999999999999999999999999999864 4444
Q ss_pred ceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHH
Q 002076 823 LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQL 902 (972)
Q Consensus 823 l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~ 902 (972)
+++|.++...+|+....+|+|||.++.||.+|+++||.++.+ ++..++..|.++|.+||..++|..++++|.+.|++.
T Consensus 166 -~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~ 243 (358)
T KOG0940|consen 166 -DLTFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELEL 243 (358)
T ss_pred -chhhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHH
Confidence 999999999999999999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred HHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhhcccccCceEEecCCCCCCCCC
Q 002076 903 LISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 903 Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
++||..+ +|++||+++|.|. ||+.+|++|.|||+.+.++++++| .+.++|+||++++|..+
T Consensus 244 ~~~~~~~-~~~~d~~~~t~~~-~~~~~~~~i~wf~~~v~~~~~~~r----~r~l~~~tg~~~vp~~~ 304 (358)
T KOG0940|consen 244 ALSGDPE-IDVNDWKQNTEYR-GYSETDRQIDWFWNNVDEMDNEER----IRLLQFVTGTSRVPVEG 304 (358)
T ss_pred HhcCCcc-cchhHHhhhcccc-cccCCccccHHHHHhhhhcChHHH----HhhhhccCCCccccccc
Confidence 9999985 9999999999999 799999999999999999999764 45999999999999764
No 11
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.7e-29 Score=287.89 Aligned_cols=209 Identities=21% Similarity=0.255 Sum_probs=175.4
Q ss_pred hHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccCCCCCCCccCCcHHHHHHHHHHHhhc------CCcccceeeE
Q 002076 754 EQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYE------ADISELELYF 827 (972)
Q Consensus 754 ~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~------~dv~~l~L~F 827 (972)
+-.+..|+-+|||+|.|+..|-+.++.|++.+||.++|.++.+.|+..+||.+|.+|..|-.-. .|.+.+++.|
T Consensus 2739 ~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhpsSd~DadFS~md~aa 2818 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHPSSDADADFSAMDLAA 2818 (3015)
T ss_pred HHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCCcccccchhhHHHHhh
Confidence 3466889999999999999999999999999999999999999999999999999999985321 2233344444
Q ss_pred EEEecccCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCC
Q 002076 828 VILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGS 907 (972)
Q Consensus 828 t~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~ 907 (972)
..+--.-....+|+|+|||.+|+||.+|+.|||..|+.++|-..-...++|+|+|+-+|||.+.|.=++++++..+|||.
T Consensus 2819 ~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~ 2898 (3015)
T KOG0943|consen 2819 AGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAEDFRLIICGC 2898 (3015)
T ss_pred ccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhHheeeeecc
Confidence 43210001235899999999999999999999999999999876677899999999999999999999999999999999
Q ss_pred CCCccHHHHhcccEeCCCcCCCCH----HHHHHHHHHhhCChhhhcccccCceEEecCCCCCCC
Q 002076 908 LDSLDFDDLRQNTNYVGGYHSVSC----FSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFY 967 (972)
Q Consensus 908 ~~~id~~dL~~~t~Y~ggy~~~~~----~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~ 967 (972)
.+ +++.-|..+|-|-..-.++.. .-+|||+|++.||..|++ .++.|.||||.||-
T Consensus 2899 ee-VniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQ----dLVfFWTgSPaLPA 2957 (3015)
T KOG0943|consen 2899 EE-VNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQ----DLVFFWTGSPALPA 2957 (3015)
T ss_pred cc-eehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhc----cEEEEecCCCCCCc
Confidence 75 999999999976543333332 458999999999996654 59999999999994
No 12
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.63 E-value=5.6e-05 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.351 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 002076 46 NHAAIKIQKCFRGKKAMEIEH 66 (972)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~ 66 (972)
.+||++||++||||++|++.+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 379999999999999999865
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.04 E-value=0.00046 Score=48.01 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=19.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH
Q 002076 45 QNHAAIKIQKCFRGKKAMEIEH 66 (972)
Q Consensus 45 r~~aAi~IQ~~~Rg~~~r~~~~ 66 (972)
.+++|++||++||||++|++.+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999874
No 14
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=78.71 E-value=2.2 Score=48.96 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 002076 46 NHAAIKIQKCFRGKKAMEIEHSK 68 (972)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~~~ 68 (972)
-+||+.||+|.|||.||..+|+.
T Consensus 17 ikaAilIQkWYRr~~ARle~rrr 39 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARRR 39 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999888764
No 15
>PTZ00014 myosin-A; Provisional
Probab=73.86 E-value=5.4 Score=50.83 Aligned_cols=35 Identities=9% Similarity=-0.037 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002076 35 ERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (972)
Q Consensus 35 eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (972)
|..+|+...+-...|..|||+||||++|++.++..
T Consensus 766 e~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~ 800 (821)
T PTZ00014 766 TQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNI 800 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444567899999999999999877763
No 16
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=63.64 E-value=6.2 Score=46.86 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002076 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKA 61 (972)
Q Consensus 28 lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~ 61 (972)
|=-|+||+-.+.+-.|||..||-.||++||-|.+
T Consensus 322 fALKVQeq~RQKHf~rrr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 322 FALKVQEQHRQKHFNRRRNPAASLIQCAWRYYAA 355 (654)
T ss_pred hhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence 4457888888889999999999999999998865
No 17
>PTZ00014 myosin-A; Provisional
Probab=63.22 E-value=11 Score=48.24 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=21.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002076 39 RLYLRRQNHAAIKIQKCFRGKKAMEIE 65 (972)
Q Consensus 39 R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (972)
|..-+++..|++.||++||||+++++.
T Consensus 793 r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 793 KRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455577999999999999999764
No 18
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=56.63 E-value=18 Score=44.28 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=22.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVRE 71 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~ 71 (972)
.+...-|..||+.||||++|.+.++-.+.
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka~ 721 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKAS 721 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999988775443
No 19
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=49.37 E-value=17 Score=27.26 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 002076 48 AAIKIQKCFRGKKAMEIEHSK 68 (972)
Q Consensus 48 aAi~IQ~~~Rg~~~r~~~~~~ 68 (972)
||..||-+||.|..|+.....
T Consensus 11 At~lI~dyfr~~K~rk~~~~~ 31 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKEQEQQ 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999875443
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=48.61 E-value=14 Score=45.33 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002076 42 LRRQNHAAIKIQKCFRGKKAMEIEHSKVR 70 (972)
Q Consensus 42 ~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R 70 (972)
-.=|.++.+++|++.|||++|++.+.++-
T Consensus 809 I~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 809 IIYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 34467789999999999999999987763
No 21
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=37.06 E-value=54 Score=41.88 Aligned_cols=36 Identities=25% Similarity=0.146 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002076 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAME 63 (972)
Q Consensus 28 lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~ 63 (972)
++++.=.-+.-|..--+..++++.||+++||+++|+
T Consensus 678 ~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~ 713 (862)
T KOG0160|consen 678 LIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR 713 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 444444455555554455566666666666666665
No 22
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=36.54 E-value=49 Score=42.25 Aligned_cols=31 Identities=23% Similarity=0.105 Sum_probs=23.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002076 45 QNHAAIKIQKCFRGKKAMEIEHSKVREQFFA 75 (972)
Q Consensus 45 r~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~ 75 (972)
+..|||.||+.||+|..|++.+..+...+-.
T Consensus 717 ~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~ 747 (862)
T KOG0160|consen 717 REAAAIGIQKECRSYLNRRRYRALIPASITI 747 (862)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888887777777666653
No 23
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=23.50 E-value=1.3e+03 Score=27.48 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=22.0
Q ss_pred CCchhHHHHHHHHHHhhhhhccCCCCcccchhhHHHHHHHHHhh
Q 002076 319 MELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKA 362 (972)
Q Consensus 319 ~~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~v~v~~~LL~~ 362 (972)
..+|....||.+.+.-....... ...+..++.|..+|+++
T Consensus 174 gniPalvrLL~a~i~k~~~~i~~----~~~l~~iLgvFQkLi~s 213 (435)
T PF03378_consen 174 GNIPALVRLLQAYIKKDPSFIVA----NNQLEPILGVFQKLIAS 213 (435)
T ss_dssp TTHHHHHHHHHHHHHHHGGG--------S-CHHHHHHHHHHHT-
T ss_pred CCcCcHHHHHHHHHHhCchhhcc----hhhHHHHHHHHHHHHCC
Confidence 55677777888777555322221 12223567778888876
No 24
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=23.16 E-value=1.9e+02 Score=35.98 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002076 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVRE 71 (972)
Q Consensus 28 lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~ 71 (972)
+|+++=.-=..|..-||-.+++++|+ |||.|..+..++...|.
T Consensus 701 llQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks~v~el~~~ 743 (1001)
T KOG0164|consen 701 LLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKSYVQELQRR 743 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34444444445777788888889998 99988877766654443
No 25
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=20.89 E-value=1.2e+02 Score=37.63 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=22.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVREQFF 74 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd 74 (972)
|+=..=|..||+-||+|++||+ ..++|++=-
T Consensus 693 r~~d~~A~~IQkAWRrfv~rrk-y~k~ree~t 723 (1106)
T KOG0162|consen 693 RKWDGMARRIQKAWRRFVARRK-YEKMREEAT 723 (1106)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4445778899999999999984 344555433
Done!