Query 002076
Match_columns 972
No_of_seqs 359 out of 1505
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 100.0 3.2E-74 1.1E-78 655.2 24.0 324 627-969 14-341 (405)
2 2oni_A E3 ubiquitin-protein li 100.0 2.9E-74 1E-78 655.7 23.5 324 628-969 11-337 (392)
3 1nd7_A WW domain-containing pr 100.0 2.5E-72 8.7E-77 637.3 26.8 313 638-969 3-317 (374)
4 1zvd_A SMAD ubiquitination reg 100.0 1.7E-72 5.8E-77 639.4 24.9 312 638-969 3-317 (380)
5 3olm_A E3 ubiquitin-protein li 100.0 5.8E-71 2E-75 634.8 23.4 314 635-969 51-367 (429)
6 1c4z_A E6AP, ubiquitin-protein 100.0 3.4E-71 1.2E-75 624.1 19.7 291 665-969 5-302 (358)
7 3pt3_A E3 ubiquitin-protein li 99.5 1.6E-15 5.5E-20 143.0 0.3 54 910-967 3-60 (118)
8 1n2d_C IQ2 and IQ3 motifs from 96.8 0.0011 3.6E-08 52.1 4.5 23 43-65 25-47 (48)
9 2ix7_C Myosin-5A; contractIle 96.3 0.0087 3E-07 48.8 7.1 42 28-69 10-51 (58)
10 2ix7_C Myosin-5A; contractIle 95.8 0.0085 2.9E-07 48.9 4.5 26 44-69 3-28 (58)
11 2kxw_B Sodium channel protein 95.7 0.0039 1.3E-07 42.6 1.7 21 43-63 3-23 (27)
12 1n2d_C IQ2 and IQ3 motifs from 95.3 0.015 5.2E-07 45.4 4.1 23 47-69 4-26 (48)
13 2l53_B CAM, voltage-gated sodi 95.1 0.011 3.7E-07 41.7 2.4 23 43-65 3-25 (31)
14 3gn4_A Myosin-VI; unconvention 93.5 0.052 1.8E-06 52.4 4.2 32 41-72 40-71 (148)
15 2dfs_A Myosin-5A; myosin-V, in 83.6 1.1 3.8E-05 57.2 6.4 21 46-66 791-811 (1080)
16 1w7j_A Myosin VA; motor protei 82.5 1 3.5E-05 55.4 5.3 28 43-70 765-792 (795)
17 1wdc_A Scallop myosin; calcium 82.4 1.2 4.2E-05 36.7 4.1 23 47-69 7-29 (64)
18 4dck_A Sodium channel protein 82.3 1.1 3.9E-05 44.3 4.5 25 43-67 127-151 (168)
19 2bl0_A Major plasmodial myosin 82.2 1.2 4E-05 36.7 3.9 23 47-69 5-27 (63)
20 1wdc_A Scallop myosin; calcium 78.9 2.9 9.8E-05 34.4 5.2 32 33-64 19-50 (64)
21 2bl0_A Major plasmodial myosin 78.1 2.6 8.8E-05 34.6 4.7 31 33-63 17-47 (63)
22 1kk8_A Myosin heavy chain, str 78.0 2.4 8.1E-05 52.5 6.4 27 43-69 776-802 (837)
23 2dfs_A Myosin-5A; myosin-V, in 74.4 4.4 0.00015 51.7 7.7 27 43-69 813-839 (1080)
24 1kk8_A Myosin heavy chain, str 68.3 3.7 0.00013 50.8 4.9 23 43-65 802-824 (837)
25 1i84_S Smooth muscle myosin he 57.4 9.8 0.00034 49.1 6.1 26 44-69 790-815 (1184)
26 3dvk_B Voltage-dependent R-typ 42.5 9.6 0.00033 24.9 1.2 16 48-63 8-23 (23)
27 1i84_S Smooth muscle myosin he 40.0 19 0.00066 46.4 4.7 22 43-64 815-836 (1184)
28 2f3y_B Voltage-dependent L-typ 30.1 35 0.0012 22.8 2.4 19 48-66 4-22 (26)
29 4anj_A Unconventional myosin-V 24.8 41 0.0014 42.6 3.8 38 34-72 763-800 (1052)
30 2be6_D Voltage-dependent L-typ 24.5 58 0.002 23.6 2.9 18 48-65 13-30 (37)
31 3b09_A Peptidyl-prolyl CIS-tra 24.5 90 0.0031 27.3 4.9 63 841-904 13-81 (88)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=3.2e-74 Score=655.18 Aligned_cols=324 Identities=30% Similarity=0.499 Sum_probs=293.1
Q ss_pred hHhhhcCCcccchhhhHHHHHHHHHHHHHhcCCCCCccceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcc
Q 002076 627 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVE 706 (972)
Q Consensus 627 ~~il~~~Pfl~pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~ 706 (972)
...+..-|+ ++|+.|+++|+.++.+.+... .....+++|||++|++||++++...++.++|++|+|+|+|
T Consensus 14 ~~~~~~~~~-~~f~~k~~~F~~~l~~~~~~~----~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g----- 83 (405)
T 3h1d_A 14 LEVLFQGPH-MDFDVKRKYFRQELERLDEGL----RKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG----- 83 (405)
T ss_dssp CGGGGCSTT-SCHHHHHHHHHHHHHHHTTTC----CCCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT-----
T ss_pred hHHhhcCCC-cCHHHHHHHHHHHHHhhhcCC----CCCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECC-----
Confidence 456677787 699999999999887654322 1234689999999999999999988889999999999998
Q ss_pred cccccCCCCcHHHHHHHHHHhhcccCCCceecCC-C-ceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHH
Q 002076 707 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-H-LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 784 (972)
Q Consensus 707 E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~-~-~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~ 784 (972)
|+|+|+||++||||+++++|+|+|++|||+.+++ + .++|||.+. ..++++++|+|+|++||+|||+|+++|++||++
T Consensus 84 E~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~ 162 (405)
T 3h1d_A 84 EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRS 162 (405)
T ss_dssp CCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC------CHHHHHHHHHHHHHHHHHHTCCCCCEECHH
T ss_pred CCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccc-cChhHHHHHHHHhHHHHHHHhCCCccCCCccHH
Confidence 7899999999999999999999999999998764 3 456999875 467889999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcCCccc--ceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHH
Q 002076 785 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE--LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHL 862 (972)
Q Consensus 785 f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~dv~~--l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~ 862 (972)
|||+|+|.+++++||+++||++|++|++|++++ +++ +++||+++.+.+|...++||+|||++|+||++||.+||++
T Consensus 163 f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~--~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l 240 (405)
T 3h1d_A 163 FYKHILGKSVRYTDMESEDYHFYQGLVYLLEND--VSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHL 240 (405)
T ss_dssp HHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSC--GGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCC--hhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHH
Confidence 999999999999999999999999999999764 555 5788888777889888999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhh
Q 002076 863 VSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEH 942 (972)
Q Consensus 863 ~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~ 942 (972)
+++|+++++|+.|++||++||++|||.++|++|+|+||+.||||.+ +||++||++||.|. ||+++||+|+|||+||++
T Consensus 241 ~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~-~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~~ 318 (405)
T 3h1d_A 241 VCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLP-TIDIDDLKSNTEYH-KYQSNSIQIQWFWRALRS 318 (405)
T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCC-CCCHHHHHHTEEEE-SSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCC-CCCHHHHHhhCccc-CCCCCCchHhhHHHHHHh
Confidence 9999999999999999999999999999999999999999999997 59999999999997 799999999999999999
Q ss_pred CChhhhcccccCceEEecCCCCCCCCC
Q 002076 943 TSGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 943 ~s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
||+|||+. ||+|+|||+|+|..+
T Consensus 319 ~s~eer~~----fL~FvTGs~rlP~~G 341 (405)
T 3h1d_A 319 FDQADRAK----FLQFVTGTSKVPLQG 341 (405)
T ss_dssp SCHHHHHH----HHHHHHSSSCCCTTC
T ss_pred CCHHHHHH----HHHHHcCCCCCCCCc
Confidence 99987665 999999999999875
No 2
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=2.9e-74 Score=655.73 Aligned_cols=324 Identities=28% Similarity=0.453 Sum_probs=295.9
Q ss_pred HhhhcCCcccchhhhHHHHHHHHHHHHHhcCCCCCccceeEEecCCcHHHHHHHHHhcCC-hhhccCceEEEEeeccCcc
Q 002076 628 EILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMS-EEDLRGAIRVTFVNELGVE 706 (972)
Q Consensus 628 ~il~~~Pfl~pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~~l~VrR~~ileda~~~l~~~~-~~~lk~~l~V~F~~e~G~~ 706 (972)
.++...||.+||+.|+.+|+..+.+. .....+.+++|||++|++||++++...+ ++.+|++++|+|+|
T Consensus 11 ~~~~~~p~~~~f~~k~~~f~~~l~~~------~~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~g----- 79 (392)
T 2oni_A 11 RENLYFQGSREFKQKYDYFRKKLKKP------ADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFES----- 79 (392)
T ss_dssp ---CCSTTHHHHHHHHHHHHHHCCCC------SSSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC------
T ss_pred hcccCCCccccHHHHHHHHHHHHhcc------cCCCCCEEEEEcCCchHHHHHHHHHccCcHHhhCccEEEEECC-----
Confidence 45677999999999999999776321 1223567999999999999999999875 34689999999999
Q ss_pred cccccCCCCcHHHHHHHHHHhhcccCCCceecC--CCceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHH
Q 002076 707 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETS--DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 784 (972)
Q Consensus 707 E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~--~~~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~ 784 (972)
|+|+|+|||+||||+++++|+|+|++|||..++ +..++|||.+....++++++|+|+|+++|+|||+|+++|++|+++
T Consensus 80 E~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~ 159 (392)
T 2oni_A 80 EKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRP 159 (392)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHH
T ss_pred CccccCCccHHHHHHHHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCccchHH
Confidence 789999999999999999999999999999764 345789998754457889999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcCCcccceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHHHH
Q 002076 785 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVS 864 (972)
Q Consensus 785 f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~ 864 (972)
|||+|+|.+++++||+++||++|++|++|++ .|+++++|+|+++.+.+|...++||+|||++|+||++||.+||++++
T Consensus 160 f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~--~d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~ 237 (392)
T 2oni_A 160 FYKMMLGKQITLNDMESVDSEYYNSLKWILE--NDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVI 237 (392)
T ss_dssp HHHHHTTCCCCTHHHHTTCHHHHHHHHHHHH--SCCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHhCHHHHHHHHHHhc--CChhHceeeEEEeeecCCceeEEecCCCCccCccchhhHHHHHHHHH
Confidence 9999999999999999999999999999986 46789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCC
Q 002076 865 NHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTS 944 (972)
Q Consensus 865 ~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s 944 (972)
+|+++++|+.|++||++||++|||.++|++|+|+||+.||||.++ ||++||++||.|+|||+++|++|+|||+||++||
T Consensus 238 ~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~-id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s 316 (392)
T 2oni_A 238 QWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMD 316 (392)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSC
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCC-CCHHHHhcceEECCCCCCCCchheeHHHHHHhCC
Confidence 999999999999999999999999999999999999999999975 9999999999999999999999999999999999
Q ss_pred hhhhcccccCceEEecCCCCCCCCC
Q 002076 945 GKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 945 ~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
+|||+. ||+|+|||+|+|..+
T Consensus 317 ~eer~~----fL~FvTGs~rlP~~G 337 (392)
T 2oni_A 317 AEKRIR----LLQFVTGTSRVPMNG 337 (392)
T ss_dssp HHHHHH----HHHHHHSCSCCCTTC
T ss_pred HHHHHH----HHHHHhCCCCCCCcc
Confidence 987665 999999999999876
No 3
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=2.5e-72 Score=637.32 Aligned_cols=313 Identities=27% Similarity=0.471 Sum_probs=289.8
Q ss_pred chhhhHHHHHHHHHHHHHhcCCCCCccceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcccccccCCCCcH
Q 002076 638 PFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFK 717 (972)
Q Consensus 638 pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~r 717 (972)
+|+.|+.+|+..+.... ...+.+++|||++|++||++++...++.++|++++|+|.| |+|+|+|||+|
T Consensus 3 ~f~~k~~~f~~~~~~~~-------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~F~g-----E~G~D~GG~~r 70 (374)
T 1nd7_A 3 GFRWKLAHFRYLCQSNA-------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGLAR 70 (374)
T ss_dssp THHHHHHHHHHHHHHTC-------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHHHH
T ss_pred ChHHHHHHHHHHHhhcC-------CCCCeEEEECCCCHHHHHHHHHHhcCHHhccceEEEEECC-----CCCcCCCccHH
Confidence 68999999998764321 1345699999999999999999999888999999999998 78999999999
Q ss_pred HHHHHHHHHhhcccCCCceecCC--CceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccCCCC
Q 002076 718 DFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNY 795 (972)
Q Consensus 718 Ef~~~l~~e~~~p~~glF~~~~~--~~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~~ 795 (972)
|||+++++|+|+|++|||..+++ ..++|||.+. ..++++++|+|+|+++|+|||+|+++|++||++|||+|+|.+++
T Consensus 71 Eff~ll~~el~~p~~~lF~~~~~~~~~~~~~p~s~-~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~ 149 (374)
T 1nd7_A 71 EWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLT 149 (374)
T ss_dssp HHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCccccccccCCCCceeccCCccc-CCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhCCCCC
Confidence 99999999999999999998653 3578999876 46788999999999999999999999999999999999999999
Q ss_pred CCCccCCcHHHHHHHHHHHhhcCCcccceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhhHHHH
Q 002076 796 LNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQ 875 (972)
Q Consensus 796 l~DL~~lDp~l~~sL~~l~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~q 875 (972)
++||+++||++|++|++|++++.+..+++|+|+++.+.+|+..++||+|||++|+||++||++||+++++|+++++|+.|
T Consensus 150 l~Dl~~~Dp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q 229 (374)
T 1nd7_A 150 IKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQ 229 (374)
T ss_dssp HHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHhhHHHHHhhhhhccCChhhhhcceeEEEeeccCCceeeEecCCCCcCceeccccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999998654433589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhhcccccCc
Q 002076 876 SSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLI 955 (972)
Q Consensus 876 ~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~F 955 (972)
++||++||++|||.++|++|+|+||+.||||.++ ||++||++||.|+| |+++|++|+|||+||++||+|||+. |
T Consensus 230 ~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~----f 303 (374)
T 1nd7_A 230 TKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMR----L 303 (374)
T ss_dssp HHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHH----H
T ss_pred HHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCC-CCHHHHhhheEEcC-CCCCCcceeeHHHHHHhcCHHHHHH----H
Confidence 9999999999999999999999999999999975 99999999999985 9999999999999999999987665 9
Q ss_pred eEEecCCCCCCCCC
Q 002076 956 SWNITLSMNSFYEC 969 (972)
Q Consensus 956 L~FvTGs~~lP~~~ 969 (972)
|+|+|||+|+|..+
T Consensus 304 L~FvTGs~rlP~~G 317 (374)
T 1nd7_A 304 LQFVTGTCRLPLGG 317 (374)
T ss_dssp HHHHHSCSCCCTTC
T ss_pred HHHHhCCCCCCCcc
Confidence 99999999999876
No 4
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-72 Score=639.40 Aligned_cols=312 Identities=28% Similarity=0.468 Sum_probs=290.5
Q ss_pred chhhhHHHHHHHHHHHHHhcCCCCCccceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcccccccCCCCcH
Q 002076 638 PFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFK 717 (972)
Q Consensus 638 pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~r 717 (972)
+|+.|+++|+..+.+.+.. ....+++|||++|++||++++...++.++|++|+|+|.| |+|+|+|||+|
T Consensus 3 ~f~~k~~~f~~~l~~~~~~------~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~r 71 (380)
T 1zvd_A 3 DLVQKLKILRQELSQQQPQ------AGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRG-----EEGLDYGGVAR 71 (380)
T ss_dssp SHHHHHHHHHHHHHHHSCS------SCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----CCCSCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCC------CCceEEEEccCCHHHHHHHHHHccCHHHhcCceEEEECC-----CcCcCCCccHH
Confidence 6899999999888654321 234589999999999999999999888999999999998 78999999999
Q ss_pred HHHHHHHHHhhcccCCCceecCCC--ceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccCCCC
Q 002076 718 DFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNY 795 (972)
Q Consensus 718 Ef~~~l~~e~~~p~~glF~~~~~~--~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~~ 795 (972)
|||+++++|+|+|++|||..+++. .++|||.+. .+++++++|+|+|+++|+|||+|+++|++||++|||+|+|.+++
T Consensus 72 Eff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~ 150 (380)
T 1zvd_A 72 EWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSA-VNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSIT 150 (380)
T ss_dssp HHHHHHHHHHTSGGGSSEEEETTEEEEEEECTTGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCcCCCeeccCCCCeeeccCchhh-cChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhCCCCC
Confidence 999999999999999999987653 467999986 36778999999999999999999999999999999999999999
Q ss_pred CCCccCCcHHHHHHHHHHHhhcCCccc-ceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhhHHH
Q 002076 796 LNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ 874 (972)
Q Consensus 796 l~DL~~lDp~l~~sL~~l~~~~~dv~~-l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~ 874 (972)
++||+++||++|+||++|++ +|+++ +++||+++.+.+|+..++||+|||++|+||++||.+||+++++|+++++|+.
T Consensus 151 l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~ 228 (380)
T 1zvd_A 151 LDDMELVDPDLHNSLVWILE--NDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEA 228 (380)
T ss_dssp STTHHHHCHHHHHHHHHHHH--SCCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHhCHHHHHHHHHHHh--CCccccccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999976 46666 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhhcccccC
Q 002076 875 QSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSL 954 (972)
Q Consensus 875 q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~ 954 (972)
|++||++||++|||.++|++|+|+||+.||||.++ ||++||++||.|. ||+++|++|+|||+||++||+|||+.
T Consensus 229 q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~---- 302 (380)
T 1zvd_A 229 QFLALQKGFNEVIPQHLLKTFDEKELELIICGLGK-IDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRAR---- 302 (380)
T ss_dssp HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSS-CCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHH----
T ss_pred HHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCC-CChhhhhhccEec-CCCCCcchhhhHHHHHHhCCHHHHHH----
Confidence 99999999999999999999999999999999974 9999999999998 79999999999999999999987665
Q ss_pred ceEEecCCCCCCCCC
Q 002076 955 ISWNITLSMNSFYEC 969 (972)
Q Consensus 955 FL~FvTGs~~lP~~~ 969 (972)
||+|+|||+|+|..+
T Consensus 303 fL~FvTGs~rlP~~G 317 (380)
T 1zvd_A 303 LLQFVTGSSRVPLQG 317 (380)
T ss_dssp HHHHHHSCSSBCTTC
T ss_pred HHHHHhCCCCCCCcc
Confidence 999999999999875
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-71 Score=634.81 Aligned_cols=314 Identities=27% Similarity=0.470 Sum_probs=281.1
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCCCCccceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcccccccCCC
Q 002076 635 FLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 714 (972)
Q Consensus 635 fl~pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG 714 (972)
+--+|+.|..+|+.+.. . .....+.+++|||++|++||++++...++.++|++|+|+|+| |+|+|+||
T Consensus 51 y~~~~~~k~~~f~~~~~---~----~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG 118 (429)
T 3olm_A 51 YKRDFRRKVIYFRSQPA---L----RILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDG-----EEGLDYGG 118 (429)
T ss_dssp HHHHHHHHHHHHHSSGG---G----SCCSSCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEET-----TC------
T ss_pred ccccchHHHHHHHHHHh---h----cCCCCceEEEEecchhHHHHHHHHHhcChHhcCcceEEEECC-----CCccCCCh
Confidence 55678889998875431 1 122345689999999999999999988888999999999998 78999999
Q ss_pred CcHHHHHHHHHHhhcccCCCceecCC--CceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccC
Q 002076 715 IFKDFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQK 792 (972)
Q Consensus 715 ~~rEf~~~l~~e~~~p~~glF~~~~~--~~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~ 792 (972)
|+||||+++++|+|+|++|||..+++ ..++|||.+. ..++++++|+|+|++||+|||+|+++|++||++|||+|+|.
T Consensus 119 ~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~ 197 (429)
T 3olm_A 119 VSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSG-INPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRK 197 (429)
T ss_dssp --CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHcCccCCCceeeCCCCeeEeeCCccc-CCHHHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHhhcCC
Confidence 99999999999999999999998653 3578999886 45788999999999999999999999999999999999999
Q ss_pred CCCCCCccCCcHHHHHHHHHHHhhcCCccc-ceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhh
Q 002076 793 YNYLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQ 871 (972)
Q Consensus 793 ~~~l~DL~~lDp~l~~sL~~l~~~~~dv~~-l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~ 871 (972)
+++++||+++||++|++|++|++ +|+++ ++++|+++.+.+|+..++||+|||++|+||++||++||+++++|+++++
T Consensus 198 ~~~l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~ 275 (429)
T 3olm_A 198 KVVLQDMEGVDAEVYNSLNWMLE--NSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDR 275 (429)
T ss_dssp CCCHHHHHHHCHHHHHHHHHHTT--SCCTTTCCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHhHHHHHHHHHHHh--CCHHHhhcCceEEEeccCCceeeEeccCCCcccccCchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986 56655 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhhccc
Q 002076 872 IRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVN 951 (972)
Q Consensus 872 i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e 951 (972)
|+.|++||++||++|||.++|++|+|+||+.||||.++ ||++||++||.|. ||+++|++|+|||+||++||+|||+.
T Consensus 276 v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~-id~~dl~~~t~y~-Gy~~~~~~I~~FW~vv~~~s~eer~~- 352 (429)
T 3olm_A 276 VQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAE-IDIEDWKKHTDYR-GYQESDEVIQWFWKCVSEWDNEQRAR- 352 (429)
T ss_dssp THHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHH-
T ss_pred HHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCC-CCHHHHHHhcccc-CCCCCchHHHHHHHHHHhCCHHHHHH-
Confidence 99999999999999999999999999999999999975 9999999999997 79999999999999999999987665
Q ss_pred ccCceEEecCCCCCCCCC
Q 002076 952 CSLISWNITLSMNSFYEC 969 (972)
Q Consensus 952 ~~~FL~FvTGs~~lP~~~ 969 (972)
||+|+|||+|+|..+
T Consensus 353 ---fL~FvTGs~rlP~~G 367 (429)
T 3olm_A 353 ---LLQFTTGTSRIPVNG 367 (429)
T ss_dssp ---HHHHHHSCSCBCTTC
T ss_pred ---HHhHhcCCCCCCCcc
Confidence 999999999999875
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=3.4e-71 Score=624.11 Aligned_cols=291 Identities=29% Similarity=0.470 Sum_probs=272.5
Q ss_pred ceeEEecCCcHHHHHHHHHh---cCChhhccCceEEEEeeccCcccccccCCCCcHHHHHHHHHHhhcccCCCceecCC-
Q 002076 665 RSRFRIRRDHILEDAYSQMS---TMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD- 740 (972)
Q Consensus 665 ~~~l~VrR~~ileda~~~l~---~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~- 740 (972)
..+++|||++|++||++++. ..++.++|++|+|+|+| |+|+|+|||+||||+++++|+|+|++|||..+++
T Consensus 5 ~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~ 79 (358)
T 1c4z_A 5 YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEG-----EQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEST 79 (358)
T ss_dssp SCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETT-----CCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTT
T ss_pred eEEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEEEECC-----CcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCC
Confidence 34899999999999999985 34578899999999999 7899999999999999999999999999998764
Q ss_pred CceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcCCc
Q 002076 741 HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADI 820 (972)
Q Consensus 741 ~~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~dv 820 (972)
+.+||||.+.. ..++|+|+|+++|+|||+|+++|++||++|||+|+|.+++++||+++||++|+||++|+++++|+
T Consensus 80 ~~~~~np~s~~----~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~ 155 (358)
T 1c4z_A 80 KLFWFNPSSFE----TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNV 155 (358)
T ss_dssp TEEEECTTCCS----CHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCH
T ss_pred CeEeeCCcccc----chHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCch
Confidence 57899998742 23579999999999999999999999999999999999999999999999999999999999888
Q ss_pred cc-ceeeEEEEe-cccCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhhc-CCCH
Q 002076 821 SE-LELYFVILN-NEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWID-MFNE 897 (972)
Q Consensus 821 ~~-l~L~Ft~~~-~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~-~F~~ 897 (972)
++ ++++|+++. +.+|+..++||+|||++|+||++||++||+++++|+++++|++|++||++||++|||.++|. +|+|
T Consensus 156 ~~~l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~ 235 (358)
T 1c4z_A 156 EDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRP 235 (358)
T ss_dssp HHHTCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSST
T ss_pred hhhccceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCH
Confidence 65 899999984 67999999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred HHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhhcccccCceEEecCCCCCCCCC
Q 002076 898 HELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC 969 (972)
Q Consensus 898 ~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~~~ 969 (972)
+||+.||||.++ ||++||++||+|+|||+++|++|+|||+||++||+|||+. ||+|+|||+|+|..+
T Consensus 236 ~ELe~li~G~~~-id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~----fL~FvTGs~rlP~~G 302 (358)
T 1c4z_A 236 EEIELLICGSRN-LDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRL----FLQFTTGTDRAPVGG 302 (358)
T ss_dssp HHHHHHHHCBCC-CCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHH----HHHHHSSSSSBCTTC
T ss_pred HHHHHHhhcccC-CCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHH----HHHHHcCCCCCCCCC
Confidence 999999999985 9999999999999999999999999999999999987665 999999999999876
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.50 E-value=1.6e-15 Score=142.97 Aligned_cols=54 Identities=13% Similarity=-0.091 Sum_probs=38.6
Q ss_pred CccHHHHhcccEeCCCcCCCC----HHHHHHHHHHhhCChhhhcccccCceEEecCCCCCCC
Q 002076 910 SLDFDDLRQNTNYVGGYHSVS----CFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFY 967 (972)
Q Consensus 910 ~id~~dL~~~t~Y~ggy~~~~----~~I~~FWevl~~~s~ee~r~e~~~FL~FvTGs~~lP~ 967 (972)
-||++|||+||+|.|||+++| ++|+|||+||++||+|||+. ||+|+|||+|+|.
T Consensus 3 ~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~----fL~FvTGs~rlP~ 60 (118)
T 3pt3_A 3 LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQD----LVYFWTSSPSLPA 60 (118)
T ss_dssp ---------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHSCC----
T ss_pred ccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHH----HHhHhcCCCCCCC
Confidence 499999999999999999887 99999999999999987665 9999999999998
No 8
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0011 Score=52.12 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEIE 65 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (972)
++++.||++||++||||++|+..
T Consensus 25 ~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 25 EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHhh
Confidence 34567999999999999998863
No 9
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=96.35 E-value=0.0087 Score=48.82 Aligned_cols=42 Identities=21% Similarity=0.075 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002076 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (972)
Q Consensus 28 lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (972)
.+++.=.--..|..-++...||+.||++||||++|+..+...
T Consensus 10 ~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 10 RIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555679999999999999998887543
No 10
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=95.81 E-value=0.0085 Score=48.87 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=22.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002076 44 RQNHAAIKIQKCFRGKKAMEIEHSKV 69 (972)
Q Consensus 44 rr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (972)
+...||+.||++||||++|++....-
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r 28 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQ 28 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999887643
No 11
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=95.70 E-value=0.0039 Score=42.60 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAME 63 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~ 63 (972)
++.+-||++||+.||+|+.++
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999875
No 12
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.015 Score=45.40 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 002076 47 HAAIKIQKCFRGKKAMEIEHSKV 69 (972)
Q Consensus 47 ~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (972)
.||+.||++||||++|+......
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~ 26 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEM 26 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999987654
No 13
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=95.12 E-value=0.011 Score=41.70 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEIE 65 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (972)
++.+-||++||+.||||+.++..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 35568999999999999998753
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=93.55 E-value=0.052 Score=52.42 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=27.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002076 41 YLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQ 72 (972)
Q Consensus 41 ~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~e 72 (972)
.-.=|.+|+|+||+.+|||++|++.+..++.-
T Consensus 40 KI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~ 71 (148)
T 3gn4_A 40 KIKYRAEACIKMQKTIRMWLCKRRHKPRIDGL 71 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 33457789999999999999999999987765
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.65 E-value=1.1 Score=57.15 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 002076 46 NHAAIKIQKCFRGKKAMEIEH 66 (972)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~ 66 (972)
..||+.||++||||++|++.+
T Consensus 791 r~aai~IQ~~~Rg~~aR~~~~ 811 (1080)
T 2dfs_A 791 RRAAITIQRYVRGHQARCYAT 811 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 455555555555555555543
No 16
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=82.52 E-value=1 Score=55.42 Aligned_cols=28 Identities=29% Similarity=0.238 Sum_probs=23.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVR 70 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R 70 (972)
++..++|+.|||+||||++|++.++..+
T Consensus 765 ~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 765 DKLRAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999987543
No 17
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=82.44 E-value=1.2 Score=36.72 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 002076 47 HAAIKIQKCFRGKKAMEIEHSKV 69 (972)
Q Consensus 47 ~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (972)
..++.|||..|||++|+..++.+
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~ 29 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQ 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665543
No 18
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=82.26 E-value=1.1 Score=44.28 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEIEHS 67 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~~~ 67 (972)
++...||+.||+.||+|+.|+..++
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 5677899999999999999887766
No 19
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=82.17 E-value=1.2 Score=36.73 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 002076 47 HAAIKIQKCFRGKKAMEIEHSKV 69 (972)
Q Consensus 47 ~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (972)
..++.|||..|||++|+..++.+
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~ 27 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAR 27 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665543
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=78.86 E-value=2.9 Score=34.44 Aligned_cols=32 Identities=22% Similarity=0.078 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002076 33 RLERNRRLYLRRQNHAAIKIQKCFRGKKAMEI 64 (972)
Q Consensus 33 r~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~ 64 (972)
..+|.+-.....+..|+..||+.+|+|.+++.
T Consensus 19 ~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 19 YLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45566666666667788899999999999863
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=78.14 E-value=2.6 Score=34.64 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002076 33 RLERNRRLYLRRQNHAAIKIQKCFRGKKAME 63 (972)
Q Consensus 33 r~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~ 63 (972)
-.+|.+-.....+..|+..||+.+|+|.+++
T Consensus 17 ~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 17 WVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555566778889999999999986
No 22
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=77.98 E-value=2.4 Score=52.52 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=22.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (972)
++-.++|+.|||+||||++|++.++..
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~ 802 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQ 802 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568999999999999999987764
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.39 E-value=4.4 Score=51.70 Aligned_cols=27 Identities=30% Similarity=0.102 Sum_probs=22.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (972)
.|+..||++||++||||++|++.++..
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr 839 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMR 839 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHH
Confidence 457889999999999999999876543
No 24
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=68.33 E-value=3.7 Score=50.78 Aligned_cols=23 Identities=17% Similarity=0.012 Sum_probs=19.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEIE 65 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (972)
++|..||++||+.||||++||..
T Consensus 802 ~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 802 QDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcch
Confidence 34468999999999999998753
No 25
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=57.38 E-value=9.8 Score=49.14 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=21.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002076 44 RQNHAAIKIQKCFRGKKAMEIEHSKV 69 (972)
Q Consensus 44 rr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (972)
+-..+|+.||++||||++|++.++..
T Consensus 790 ~l~~~~~~iQ~~~Rg~l~R~~~~k~~ 815 (1184)
T 1i84_S 790 KITDVIIAFQAQCRGYLARKAFAKRQ 815 (1184)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999887654
No 26
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=42.51 E-value=9.6 Score=24.93 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHH...
Q 002076 48 AAIKIQKCFRGKKAME... 63 (972)
Q Consensus 48 aAi~IQ~~~Rg~~~r~... 63 (972)
||..||-+||.++.|+
T Consensus 8 A~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHhccC...
Confidence 7899999999998763
No 27
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=40.02 E-value=19 Score=46.40 Aligned_cols=22 Identities=18% Similarity=0.071 Sum_probs=18.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q 002076 43 RRQNHAAIKIQKCFRGKKAMEI 64 (972)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~ 64 (972)
|++..||++||+.||||++++.
T Consensus 815 ~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 815 QQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3456899999999999999975
No 28
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=30.13 E-value=35 Score=22.78 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 002076 48 AAIKIQKCFRGKKAMEIEH 66 (972)
Q Consensus 48 aAi~IQ~~~Rg~~~r~~~~ 66 (972)
|...||-++|.|..|+...
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999887653
No 29
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=24.82 E-value=41 Score=42.61 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002076 34 LERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQ 72 (972)
Q Consensus 34 ~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~e 72 (972)
.+.-++...++..++|+.||+ +|||++|++.++..+..
T Consensus 763 ~~~LE~~r~~~~~~~~~~iq~-~r~~l~r~~~~k~~~~a 800 (1052)
T 4anj_A 763 FAEFDQIMKSDPDHLAELVKR-VNHWLICSRWKKVQWCS 800 (1052)
T ss_dssp HHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
No 30
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=24.51 E-value=58 Score=23.62 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002076 48 AAIKIQKCFRGKKAMEIE 65 (972)
Q Consensus 48 aAi~IQ~~~Rg~~~r~~~ 65 (972)
|...||-++|.|+.|+..
T Consensus 13 atfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 13 ATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678899999999988765
No 31
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=24.49 E-value=90 Score=27.27 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=28.4
Q ss_pred eccCCCCccccChhhHHHHHHHHHHHHHhhhHHH------HHHHHHhhhhhccchhhhcCCCHHHHHHHH
Q 002076 841 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ------QSSHFLRGFQQLIQKDWIDMFNEHELQLLI 904 (972)
Q Consensus 841 eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~------q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li 904 (972)
-|+|.|+...++-++-.+=+.-.+=+-+-++++. ..++|.+||.+.+..+-. .++++|++..+
T Consensus 13 ~~~~~~~~~~~~l~t~~~K~SYaIG~~mG~~L~~~g~~~lD~dav~~Gl~Dal~Gk~~-~ls~eei~~~l 81 (88)
T 3b09_A 13 GLVPRGSHMSDLFSTMEQHASYGVGRQMGEQLAANSFEGIDIPAVQAGLADAFAGKES-AVSMEELQVAF 81 (88)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHTTCCC-SSCHHHHHHHH
T ss_pred CCCcCCcccccccCCHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHcCCCC-CCCHHHHHHHH
Confidence 5888888776653333322222233333444332 356788888888765443 35777777665
Done!