Your job contains 1 sequence.
>002077
MAAISPIDISSSDSDLDIGESDTSETRQSGNVRILPPWATKAAVNARTGYGGQSQKVPSF
ERSYASNGSSSNANSYSQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRI
ANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPS
TVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADER
AVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGI
LADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETG
ESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHG
GSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK
ISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK
RSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEE
WAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS
GEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNM
CPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDI
LHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH
CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNP
TTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASR
LTVEDLRYLFMV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002077
(972 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2008096 - symbol:AT1G50410 species:3702 "Arabi... 1491 1.3e-255 2
TAIR|locus:2095360 - symbol:AT3G20010 species:3702 "Arabi... 1446 2.0e-245 3
TAIR|locus:2008470 - symbol:EDA16 "embryo sac development... 1146 1.2e-188 3
TAIR|locus:2089318 - symbol:AT3G16600 species:3702 "Arabi... 513 1.7e-135 4
POMBASE|SPBC23E6.02 - symbol:rrp2 "ATP-dependent DNA heli... 613 2.2e-84 4
ASPGD|ASPL0000030172 - symbol:AN5483 species:162425 "Emer... 381 2.3e-73 4
ZFIN|ZDB-GENE-030131-3306 - symbol:hltf "helicase-like tr... 340 1.5e-70 6
POMBASE|SPAC17A2.12 - symbol:rrp1 "ATP-dependent DNA heli... 352 2.8e-70 6
TAIR|locus:2158357 - symbol:AT5G43530 species:3702 "Arabi... 361 3.4e-70 6
SGD|S000000318 - symbol:RAD16 "Protein that binds damaged... 354 1.4e-68 6
TAIR|locus:2207175 - symbol:AT1G05120 species:3702 "Arabi... 356 1.3e-67 5
DICTYBASE|DDB_G0272082 - symbol:DDB_G0272082 "CHR group p... 362 4.3e-67 7
MGI|MGI:1196437 - symbol:Hltf "helicase-like transcriptio... 312 4.8e-66 6
CGD|CAL0000717 - symbol:orf19.5675 species:5476 "Candida ... 338 1.2e-65 7
ASPGD|ASPL0000049992 - symbol:AN2256 species:162425 "Emer... 371 1.9e-63 6
CGD|CAL0006085 - symbol:RAD16 species:5476 "Candida albic... 362 4.9e-63 5
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 347 1.6e-62 5
SGD|S000005717 - symbol:ULS1 "Protein involved in proteol... 451 2.0e-62 4
POMBASE|SPCC330.01c - symbol:rhp16 "Rad16 homolog Rhp16" ... 326 1.0e-61 6
POMBASE|SPBC582.10c - symbol:SPBC582.10c "ATP-dependent D... 339 1.2e-61 6
UNIPROTKB|I3LM88 - symbol:HLTF "Uncharacterized protein" ... 313 2.2e-61 5
UNIPROTKB|F1MLM2 - symbol:HLTF "Uncharacterized protein" ... 313 2.8e-61 5
UNIPROTKB|E2R9I5 - symbol:HLTF "Uncharacterized protein" ... 313 3.5e-61 5
UNIPROTKB|Q14527 - symbol:HLTF "Helicase-like transcripti... 309 2.6e-60 5
GENEDB_PFALCIPARUM|PFL2440w - symbol:PFL2440w "DNA repair... 335 2.1e-59 5
UNIPROTKB|Q8I4S6 - symbol:PFL2440w "DNA repair protein rh... 335 2.1e-59 5
RGD|1309031 - symbol:Hltf "helicase-like transcription fa... 315 7.7e-59 5
UNIPROTKB|E1C366 - symbol:TTF2 "Uncharacterized protein" ... 299 4.4e-56 6
UNIPROTKB|E1C1L9 - symbol:TTF2 "Uncharacterized protein" ... 299 5.0e-56 6
POMBASE|SPAC13G6.01c - symbol:rad8 "ubiquitin-protein lig... 347 1.1e-55 7
UNIPROTKB|Q9UNY4 - symbol:TTF2 "Transcription termination... 313 1.4e-55 6
TAIR|locus:2196115 - symbol:AT1G02670 species:3702 "Arabi... 332 3.2e-54 5
ZFIN|ZDB-GENE-110411-73 - symbol:si:ch1073-303l5.1 "si:ch... 290 6.8e-54 5
WB|WBGene00010061 - symbol:F54E12.2 species:6239 "Caenorh... 273 1.0e-53 7
UNIPROTKB|G4MPA7 - symbol:MGG_07014 "DNA repair protein R... 329 1.6e-53 6
WB|WBGene00020742 - symbol:T23H2.3 species:6239 "Caenorha... 285 2.4e-52 5
ASPGD|ASPL0000065871 - symbol:AN7538 species:162425 "Emer... 312 2.7e-52 5
MGI|MGI:1921294 - symbol:Ttf2 "transcription termination ... 312 3.5e-52 5
FB|FBgn0037531 - symbol:CG10445 species:7227 "Drosophila ... 265 1.2e-51 6
UNIPROTKB|F1N2E8 - symbol:TTF2 "Uncharacterized protein" ... 289 1.6e-51 6
UNIPROTKB|I3L7V5 - symbol:TTF2 "Uncharacterized protein" ... 310 1.7e-50 5
UNIPROTKB|F1SAY2 - symbol:TTF2 "Uncharacterized protein" ... 310 2.0e-50 5
UNIPROTKB|E2RGF7 - symbol:TTF2 "Uncharacterized protein" ... 302 1.1e-49 6
FB|FBgn0002542 - symbol:lds "lodestar" species:7227 "Dros... 293 2.2e-49 4
ASPGD|ASPL0000056426 - symbol:AN0044 species:162425 "Emer... 237 1.6e-48 6
DICTYBASE|DDB_G0282115 - symbol:DDB_G0282115 "CHR group p... 324 7.6e-48 6
SGD|S000004022 - symbol:RAD5 "DNA helicase" species:4932 ... 288 9.4e-48 6
GENEDB_PFALCIPARUM|MAL13P1.216 - symbol:MAL13P1.216 "DNA ... 208 1.8e-46 6
CGD|CAL0004569 - symbol:orf19.2097 species:5476 "Candida ... 287 1.1e-42 7
ASPGD|ASPL0000008250 - symbol:AN10794 species:162425 "Eme... 333 3.3e-42 4
UNIPROTKB|H7C5K0 - symbol:HLTF "Helicase-like transcripti... 254 3.4e-38 2
UNIPROTKB|Q8EGF3 - symbol:SO_1651 "Helicase/SNF2 family d... 262 1.0e-37 5
TIGR_CMR|SO_1651 - symbol:SO_1651 "Snf2 family protein" s... 262 1.0e-37 5
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 276 6.4e-37 5
TIGR_CMR|CPS_3404 - symbol:CPS_3404 "Snf2 family protein"... 276 6.4e-37 5
TIGR_CMR|BA_1804 - symbol:BA_1804 "helicase, putative" sp... 289 2.0e-36 5
UNIPROTKB|O53499 - symbol:helZ "PROBABLE HELICASE HELZ" s... 231 8.5e-34 5
UNIPROTKB|G4NIT2 - symbol:MGG_12155 "Uncharacterized prot... 229 2.1e-33 5
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 288 2.8e-32 6
DICTYBASE|DDB_G0281949 - symbol:helE "CHR group protein" ... 248 1.9e-31 7
DICTYBASE|DDB_G0287171 - symbol:DDB_G0287171 "CHR group p... 277 2.4e-31 7
UNIPROTKB|Q71Z25 - symbol:LMOf2365_1665 "Helicase, Snf2 f... 260 2.4e-31 5
UNIPROTKB|Q5FWR0 - symbol:smarcad1 "SWI/SNF-related matri... 274 3.2e-31 4
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 282 3.7e-31 5
WB|WBGene00007027 - symbol:ssl-1 species:6239 "Caenorhabd... 274 5.5e-31 5
UNIPROTKB|E2RG62 - symbol:SMARCAD1 "Uncharacterized prote... 279 7.8e-30 5
UNIPROTKB|J9NX47 - symbol:SMARCAD1 "Uncharacterized prote... 279 7.8e-30 5
UNIPROTKB|J9PA79 - symbol:SMARCAD1 "Uncharacterized prote... 279 7.8e-30 5
RGD|1310342 - symbol:Shprh "SNF2 histone linker PHD RING ... 218 1.3e-29 7
FB|FBgn0032157 - symbol:Etl1 "Etl1 homologue" species:722... 265 1.5e-29 5
MGI|MGI:1917581 - symbol:Shprh "SNF2 histone linker PHD R... 210 1.7e-29 7
UNIPROTKB|E1C5L6 - symbol:SHPRH "Uncharacterized protein"... 219 1.8e-29 7
UNIPROTKB|E1C615 - symbol:SHPRH "Uncharacterized protein"... 219 1.8e-29 7
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 254 2.3e-29 4
SGD|S000006003 - symbol:MOT1 "Essential protein involved ... 265 2.6e-29 5
UNIPROTKB|E1B7X9 - symbol:SMARCAD1 "SWI/SNF-related matri... 276 3.1e-29 4
ZFIN|ZDB-GENE-050522-499 - symbol:smarcad1 "SWI/SNF-relat... 258 3.4e-29 5
UNIPROTKB|F1RWW3 - symbol:SMARCAD1 "Uncharacterized prote... 277 5.0e-29 4
SGD|S000002742 - symbol:SWR1 "Swi2/Snf2-related ATPase st... 280 5.6e-29 5
UNIPROTKB|Q9H4L7 - symbol:SMARCAD1 "SWI/SNF-related matri... 278 7.8e-29 4
MGI|MGI:95453 - symbol:Smarcad1 "SWI/SNF-related, matrix-... 274 8.1e-29 4
RGD|1309640 - symbol:Smarcad1 "SWI/SNF-related, matrix-as... 274 8.2e-29 4
TIGR_CMR|BA_5487 - symbol:BA_5487 "helicase, putative" sp... 233 8.9e-29 4
WB|WBGene00010845 - symbol:M03C11.8 species:6239 "Caenorh... 270 9.6e-29 5
ZFIN|ZDB-GENE-060531-56 - symbol:ercc6l "excision repair ... 258 1.0e-28 5
UNIPROTKB|F1NAD2 - symbol:SMARCAD1 "Uncharacterized prote... 266 1.3e-28 4
UNIPROTKB|E2R8G0 - symbol:SHPRH "Uncharacterized protein"... 211 1.4e-28 7
UNIPROTKB|Q149N8 - symbol:SHPRH "E3 ubiquitin-protein lig... 215 1.6e-28 7
CGD|CAL0002614 - symbol:orf19.4502 species:5476 "Candida ... 262 1.6e-28 4
UNIPROTKB|K4DI94 - symbol:SHPRH "SNF2 histone linker PHD ... 215 1.6e-28 7
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 252 2.0e-28 5
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 288 3.2e-28 5
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 286 3.4e-28 6
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 233 3.4e-28 6
UNIPROTKB|E1BLB1 - symbol:SHPRH "Uncharacterized protein"... 209 3.6e-28 7
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 282 6.1e-28 5
TAIR|locus:2051678 - symbol:ETL1 species:3702 "Arabidopsi... 284 6.3e-28 4
UNIPROTKB|F1S736 - symbol:SHPRH "Uncharacterized protein"... 209 7.1e-28 7
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 280 1.1e-27 5
ASPGD|ASPL0000041040 - symbol:AN9077 species:162425 "Emer... 266 1.2e-27 5
WARNING: Descriptions of 453 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2008096 [details] [associations]
symbol:AT1G50410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
[GO:0045492 "xylan biosynthetic process" evidence=RCA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000241058 EMBL:AY039939 EMBL:AY142669
IPI:IPI00533542 RefSeq:NP_564568.1 UniGene:At.15795
ProteinModelPortal:Q94BR5 SMR:Q94BR5 PaxDb:Q94BR5 PRIDE:Q94BR5
EnsemblPlants:AT1G50410.1 GeneID:841463 KEGG:ath:AT1G50410
TAIR:At1g50410 InParanoid:Q94BR5 OMA:EVRVMIM PhylomeDB:Q94BR5
ProtClustDB:CLSN2684720 ArrayExpress:Q94BR5 Genevestigator:Q94BR5
Uniprot:Q94BR5
Length = 981
Score = 1491 (529.9 bits), Expect = 1.3e-255, Sum P(2) = 1.3e-255
Identities = 298/445 (66%), Positives = 356/445 (80%)
Query: 544 IKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 603
IK PISRNSL GYKKLQAVLRAIMLRRTKGT +DGQPIINLPPKTI+L++VDFS EE +F
Sbjct: 538 IKGPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEERSF 597
Query: 604 YKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEM 663
Y KLESDS +FKA+A AGT+NQNYANILLMLLRLRQACDHP LVK Y+ DSVGK+S E
Sbjct: 598 YVKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLVKRYNSDSVGKVSEEA 657
Query: 664 AKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPA 723
K+LP++ L+ LLSRLE SS ICCVC DPPED VVT+CGH+FCYQC S+YITGD++ CPA
Sbjct: 658 VKKLPKEDLVSLLSRLE-SSPICCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPA 716
Query: 724 PRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHT 783
PRC+EQL DVVFSK+TL++CV+DD G S ++ DKS + E+ SSKI+ VLDIL +
Sbjct: 717 PRCREQLAHDVVFSKSTLRSCVADDLGCSSSEDNSHDKSVFQNGEFSSSKIKAVLDILQS 776
Query: 784 QCELNTKCSIVEIHDLAGSNGSS----------AVHSKSPIE------GPIKSIVFSQWT 827
T S + S + + K+ ++ GPIK+I+FSQWT
Sbjct: 777 LSNQGTSNSTQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWT 836
Query: 828 RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA 887
MLDLVE SL ++ I++RRLDGTMSL ARDRAVK+F+ D ++ VM+MSLKAGNLGLNM+A
Sbjct: 837 GMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIA 896
Query: 888 ASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVAS 947
A HVILLDLWWNPTTEDQA+DRAHRIGQTRPVTVTR+TI++TVEDRIL LQ++KRKMVAS
Sbjct: 897 ACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVAS 956
Query: 948 AFGEDQGGGTASRLTVEDLRYLFMV 972
AFGED GG +A+RLTV+DL+YLFMV
Sbjct: 957 AFGEDHGGSSATRLTVDDLKYLFMV 981
Score = 993 (354.6 bits), Expect = 1.3e-255, Sum P(2) = 1.3e-255
Identities = 229/440 (52%), Positives = 267/440 (60%)
Query: 111 GQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTF 170
G V RI N++ DYEK SSQQA KRT P + N N+S R
Sbjct: 85 GNGSIVTSRIPNISVGDYEKFSSQQAFKRTHPPTFSRPPFPPRPDIGTSNGNASHFR--- 141
Query: 171 GNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDL 230
G A+ G V + G RILP S+ HG S S + F G SD
Sbjct: 142 GGAHDDLGMGRVTN--------------------GTRILPPSVAHGTSASPSHFNGLSDP 181
Query: 231 AYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+R+G +ER DERLIYQAAL++LNQPK E LP GLLSV L+KHQKIALAWM QKE
Sbjct: 182 MHRNGIGEERNSENDERLIYQAALQELNQPKSEVDLPAGLLSVPLMKHQKIALAWMFQKE 241
Query: 291 TRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEXXXXXXXXXXXX 350
T SLHC+GGILADDQGLGKT+S IALI Q ++K K++ GNQ+ E
Sbjct: 242 TNSLHCMGGILADDQGLGKTVSTIALILKQMH-EAKLKSKNSGNQEAEALDLDADDESEN 300
Query: 351 XXX---XKVKE-TGESDD--IKPVP--EVXXXXXXXXXXXPAAGTLVVCPASVLRQWARE 402
K +G + D IK E PAAGTL+VCPASV+RQWARE
Sbjct: 301 AFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWARE 360
Query: 403 LEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKN 462
L++KV D+A LSVLIYHGG+RTKDP+ELAKYDVV+TTY+IV+NEVPKQP VD++E DEKN
Sbjct: 361 LDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQPLVDDDENDEKN 420
Query: 463 GETYGLSSEFSVNKKRKKIXXXXXXXXXXXXXXXXX-XIDYGCGPLAKVGWFRVVLDEAQ 521
E YGL+S FS+NKKRK + D G LAKVGWFRVVLDEAQ
Sbjct: 421 SEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEAQ 480
Query: 522 TIKNHRTQVARACCSLRAKR 541
TIKNHRTQVARACC LRAKR
Sbjct: 481 TIKNHRTQVARACCGLRAKR 500
Score = 37 (18.1 bits), Expect = 1.7e-154, Sum P(2) = 1.7e-154
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 235 GSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
G ++ G ++L QA L + + + TL DG +NL
Sbjct: 540 GPISRNSLQGYKKL--QAVLRAIMLRRTKGTLLDGQPIINL 578
>TAIR|locus:2095360 [details] [associations]
symbol:AT3G20010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010050
"vegetative phase change" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0045787 "positive regulation of cell
cycle" evidence=RCA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AP002050 HSSP:Q99728
HOGENOM:HOG000241058 ProtClustDB:CLSN2684720 IPI:IPI00543291
RefSeq:NP_188635.1 UniGene:At.43523 ProteinModelPortal:Q9LHE4
SMR:Q9LHE4 PaxDb:Q9LHE4 PRIDE:Q9LHE4 EnsemblPlants:AT3G20010.1
GeneID:821539 KEGG:ath:AT3G20010 TAIR:At3g20010 InParanoid:Q9LHE4
OMA:SSAICYE PhylomeDB:Q9LHE4 Genevestigator:Q9LHE4 Uniprot:Q9LHE4
Length = 1047
Score = 1446 (514.1 bits), Expect = 2.0e-245, Sum P(3) = 2.0e-245
Identities = 282/441 (63%), Positives = 347/441 (78%)
Query: 542 STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEW 601
STIK+PISRNS GYKKLQAVLRAIMLRRTKGT +DG+PIINLPPK ++L++VDFS E
Sbjct: 607 STIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKVVNLSQVDFSVAER 666
Query: 602 AFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISG 661
+FYKKLE+DS +FKA+ADAGT++QNYANILL+LLRLRQACDHP LVK Y+ D VGK+S
Sbjct: 667 SFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQLVKRYNSDPVGKVSE 726
Query: 662 EMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMC 721
+RLPR+ L++RLE+SSAIC C++PPE VVT+CGH+FCY+C EYITGD+N C
Sbjct: 727 AAVRRLPREARSRLINRLESSSAICYECNEPPEKPVVTLCGHIFCYECVLEYITGDENTC 786
Query: 722 PAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDIL 781
P PRCK+QL DVVFS+++L+NC SDD G S + D+S ++ SSKI+ VLDIL
Sbjct: 787 PVPRCKQQLARDVVFSESSLRNCTSDDSGCSSSHDNGLDRSVFQKRDFCSSKIKAVLDIL 846
Query: 782 HTQCELNTKCSIVEIHDLAGSNGSS----------AVHSKSPIEGPIKSIVFSQWTRMLD 831
+ + ++ S + S +HS SP +G +K+I+FSQWT MLD
Sbjct: 847 QSLSQPDSPNSAQHGQMPSSSRPYDDDDVTIVEPMRLHSSSPSQGAVKTIIFSQWTGMLD 906
Query: 832 LVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHV 891
LVE + + I++RRLDGTMSL ARDRAVK+F+ ++ VMLMSLKAGNLGLNMVAA HV
Sbjct: 907 LVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNLGLNMVAACHV 966
Query: 892 ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 951
ILLDLWWNPTTEDQA+DRAHRIGQTRPVTVTR+TI+DTVEDRILKLQ++KR MVASAFGE
Sbjct: 967 ILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQEEKRTMVASAFGE 1026
Query: 952 DQGGGTASRLTVEDLRYLFMV 972
+ GG +A+RLTV+DL+YLFMV
Sbjct: 1027 EHGGSSATRLTVDDLKYLFMV 1047
Score = 521 (188.5 bits), Expect = 2.0e-245, Sum P(3) = 2.0e-245
Identities = 100/160 (62%), Positives = 123/160 (76%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
PAAGTL+VCPASV+RQWAREL++KV +++ LSVL+YHG +RTKDP ELA+YDVV+TTY+I
Sbjct: 412 PAAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAI 471
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKIXXXXXXXXXXXXXXXX-XXID 501
VTNE P + VDE+E DEKN + YGL+S FS NKKRK + +
Sbjct: 472 VTNEAPNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTSSE 531
Query: 502 YGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR 541
CGPL KVGWFR+VLDEAQTIKN+RTQ+AR+CC+LRAKR
Sbjct: 532 PDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKR 571
Score = 438 (159.2 bits), Expect = 2.0e-245, Sum P(3) = 2.0e-245
Identities = 105/215 (48%), Positives = 132/215 (61%)
Query: 127 DYEKISSQQALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDTFGNAYHLAGPSTVNSK 185
DYE+ SQQALKRTLP P L ++S +++ N S+ FG Y S V +K
Sbjct: 134 DYERPLSQQALKRTLPPSFNPPPLPSRSGTNNIRNAGGSR----FGADYSHPAVSAVGNK 189
Query: 186 GYIRDYYVKKNDD-DIMM-YEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVG 243
D+Y + + I G RILP SL HG S S+ G SD +R G ++R
Sbjct: 190 STFGDHYSGAHAEIGIQRGVNGVRILPPSLTHGTSASVLHHAGSSDPMHRFGGGEDRNPD 249
Query: 244 GDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
DERL+YQAAL+ LNQP E+ LP G LSV L++HQKIALAWM QKET S +C GGILAD
Sbjct: 250 NDERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQKETSSFNCPGGILAD 309
Query: 304 DQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTE 338
DQGLGKT+S IALI Q+ + S+ K+E Q+TE
Sbjct: 310 DQGLGKTVSTIALILKQK-IVSQLKSESSCKQETE 343
Score = 109 (43.4 bits), Expect = 1.1e-210, Sum P(3) = 1.1e-210
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 95 NGQADDSHYLSGNKN-VGQLQTVNPRIANVASADYEKISSQQALKRTLP-AFPQPHSLNT 152
NG + D+ +K G TVN RI++ + ADY ++SS+QALKRTLP +F P
Sbjct: 58 NGASSDTSRPGVSKPFTGNGNTVNSRISSGSGADYVRLSSEQALKRTLPPSFNSPPLPAR 117
Query: 153 KSKSSVENMNSSQI 166
+++ N + S++
Sbjct: 118 SGTNNISNASGSRV 131
Score = 38 (18.4 bits), Expect = 3.4e-203, Sum P(3) = 3.4e-203
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 27 RQSGNVRILPPWATKAAVNARTGYGGQSQKVPSF 60
R VRILPP T + + G S + F
Sbjct: 207 RGVNGVRILPPSLTHGTSASVLHHAGSSDPMHRF 240
>TAIR|locus:2008470 [details] [associations]
symbol:EDA16 "embryo sac development arrest 16"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0009553
"embryo sac development" evidence=IMP] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Prosite:PS00518 EMBL:CP002684 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 GO:GO:0009553 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 IPI:IPI00518434 RefSeq:NP_176309.2
UniGene:At.36526 UniGene:At.68763 ProteinModelPortal:F4HTG1
SMR:F4HTG1 PRIDE:F4HTG1 EnsemblPlants:AT1G61140.1 GeneID:842407
KEGG:ath:AT1G61140 OMA:WADELHK Uniprot:F4HTG1
Length = 1280
Score = 1146 (408.5 bits), Expect = 1.2e-188, Sum P(3) = 1.2e-188
Identities = 245/441 (55%), Positives = 307/441 (69%)
Query: 542 STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEW 601
STIK PI+RN + GY+KLQA+L+ +MLRRTKG+ +DG+PII+LPPK+I L KVDF+ EE
Sbjct: 852 STIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDFTVEER 911
Query: 602 AFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-EYDFDSVGKIS 660
FY KLE++S +F+ +A+AGTV QNY NILLMLLRLRQACDHPLLV EY F +
Sbjct: 912 DFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEYSFTWESSV- 970
Query: 661 GEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNM 720
G K++ D S AIC +C+D PED+V ++CGHVFC QC E +TGD N
Sbjct: 971 GLAKKQIQSD----------ASLAICGICNDAPEDAVASVCGHVFCKQCIYERLTGDSNH 1020
Query: 721 CPAPRCKEQLGADVVFSKTTLKNCVSD--DGGGSPTDSPFADKSGILDNEYISSKIRTVL 778
CP C +L + SKT L + + D + S + SP +D+ D Y SSKI+ L
Sbjct: 1021 CPFANCNVRLTISSLSSKTRLDDAMPDMQERATSNSLSPCSDE----DLPYGSSKIKAAL 1076
Query: 779 DILHT---QCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIK-----SIVFSQWTRML 830
+IL + +L I E + +G + + + ++ PIK +IVFSQWT+ML
Sbjct: 1077 EILQSLPKAHDLTDSNQISENREYSGLSITPVKNEGMSVDVPIKVAGEKAIVFSQWTKML 1136
Query: 831 DLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASH 890
+L+E SL IQYRRLDGTMS+ ARD+AV+DFNT E+TVM+MSLKA +LGLNMVAA H
Sbjct: 1137 NLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKAASLGLNMVAACH 1196
Query: 891 VILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFG 950
V++LDLWWNPTTEDQA+DRAHRIGQTRPVTV R T++DTVEDRIL LQ KR MVASAFG
Sbjct: 1197 VLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQQKKRMMVASAFG 1256
Query: 951 EDQGGGTASRLTVEDLRYLFM 971
ED+ G S LTVEDL YLFM
Sbjct: 1257 EDEKGSRQSHLTVEDLSYLFM 1277
Score = 682 (245.1 bits), Expect = 1.2e-188, Sum P(3) = 1.2e-188
Identities = 163/351 (46%), Positives = 209/351 (59%)
Query: 196 NDDDIMMYE--GNRILPSSLMHGKS-VSMTQFGGPSDLAYRSGSADERAVGGDERLIYQA 252
+D D+ + E G +P + K V +++ S +SG + E +I+QA
Sbjct: 476 DDSDVCIIEPYGQSAIPHRPLAMKMPVVSSEYSTVSHNFNQSGGL--KLQSNKENMIFQA 533
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
AL+DL QP EA LPDG+L+V LL+HQ+IAL+WM QKET C GGILADDQGLGKT+S
Sbjct: 534 ALQDLTQPNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVS 593
Query: 313 IIALIQMQRSLQSKSKTEVLGNQKTEXXXXXXXXXXXXXXXXKVKETGESDDIKPVPEVX 372
IALI +RS +++ E + + + K S + +V
Sbjct: 594 TIALILKERSKPAQACEESTKKEIFDLESETGECAPLKPSG-RSKHFEHSQLLSNENKVG 652
Query: 373 XXXXXXXXXXPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432
PAAGTLVVCP SV+RQWA EL KV +A LSVL+YHG SRTKDP ELAK
Sbjct: 653 GDSVGKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAK 712
Query: 433 YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYG--LSSEFSVNKKRKKIXXXXXXXXX 490
YDVV+TT+SIV+ EVPKQP VD+E+ +EK+G G ++ F NKKRK
Sbjct: 713 YDVVVTTFSIVSMEVPKQPLVDDED-EEKDGVHDGGTAATGFCSNKKRK------YPPDS 765
Query: 491 XXXXXXXXXIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR 541
+++ GPLAKV WFRVVLDEAQ+IKN++TQVARAC LRAKR
Sbjct: 766 KKKGSKKKKVEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKR 816
Score = 39 (18.8 bits), Expect = 1.2e-188, Sum P(3) = 1.2e-188
Identities = 25/106 (23%), Positives = 39/106 (36%)
Query: 100 DSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVE 159
D YLSG N + ++ D EK S A + LP+ K S
Sbjct: 358 DDAYLSGETNRWWSGASSSAVSY--QTDIEKGYSYMAPQTALPS-------QDSGKISSN 408
Query: 160 NMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEG 205
+ S DT Y + PS V +D+ +++ D + + G
Sbjct: 409 HFYDS---DTCLQ-YVVEDPSPVTQNNEYKDFQIQQGDREYIQPRG 450
>TAIR|locus:2089318 [details] [associations]
symbol:AT3G16600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Pfam:PF00097 Prosite:PS00518 GO:GO:0005524 EMBL:CP002686
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:QACNHPQ
IPI:IPI00536054 RefSeq:NP_188282.1 UniGene:At.53337
ProteinModelPortal:F4J2R0 PRIDE:F4J2R0 EnsemblPlants:AT3G16600.1
GeneID:820911 KEGG:ath:AT3G16600 Uniprot:F4J2R0
Length = 638
Score = 513 (185.6 bits), Expect = 1.7e-135, Sum P(4) = 1.7e-135
Identities = 114/253 (45%), Positives = 156/253 (61%)
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRS--TIKIPISR--NSLHGYKKLQ 560
G L +V W RVVLDEA TIKNHRT +A+AC SLRAKR PI + L+ Y +
Sbjct: 206 GALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFL 265
Query: 561 AVLRAIML----RRTKGTFIDGQPIINLPPKTISLTKVDFSK-EEWAFYKKLESDSLKKF 615
M +R K ID +P+ L + + +EW+FY+KLE +S KF
Sbjct: 266 RYHPYAMCNSFHQRIKAP-IDKKPLHGYKKLQAILRGIMLRRTKEWSFYRKLELNSRWKF 324
Query: 616 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF-DSVGKISGEMAKRLPRDMLID 674
+ +A GT++++ A +L+MLLRLRQAC+HP LV Y D+ K+S + + PR+ LI
Sbjct: 325 EEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTRKMS-DGVRVAPRENLIM 383
Query: 675 LLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734
L L+ SS C VCSDPP+D VVT+CGHVFCY+C S I GD+N CPA C QL DV
Sbjct: 384 FLDLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYECVSVNINGDNNTCPALNCHSQLKHDV 443
Query: 735 VFSKTTLKNCVSD 747
VF+++ +++C++D
Sbjct: 444 VFTESAVRSCIND 456
Score = 346 (126.9 bits), Expect = 1.7e-135, Sum P(4) = 1.7e-135
Identities = 69/97 (71%), Positives = 79/97 (81%)
Query: 855 ARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 914
+R KD + + MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQA+DRAHRIG
Sbjct: 493 SRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIG 552
Query: 915 QTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 951
QTR VTVTR+ I++TVE+RIL L + KR +VASA GE
Sbjct: 553 QTRAVTVTRIAIKNTVEERILTLHERKRNIVASALGE 589
Score = 288 (106.4 bits), Expect = 1.7e-135, Sum P(4) = 1.7e-135
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 245 DERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADD 304
+ER+IYQAAL+DL QPK E LP G+L+V L++HQKIAL WM +KE RS HCLGGILADD
Sbjct: 23 NERVIYQAALQDLKQPKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADD 82
Query: 305 QGLGKTISIIALIQMQRSLQSKSK 328
QGLGKTIS I+LI +Q+ L+S+SK
Sbjct: 83 QGLGKTISTISLILLQK-LKSQSK 105
Score = 256 (95.2 bits), Expect = 1.7e-135, Sum P(4) = 1.7e-135
Identities = 45/75 (60%), Positives = 63/75 (84%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
+ GTL+VCPASV++QWARE+++KV D+ LSVL++HG RTKDP E+A YDVV+TTY+IV
Sbjct: 114 SGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIV 173
Query: 444 TNEVPKQPSVDEEEA 458
TNEVP+ P ++ ++
Sbjct: 174 TNEVPQNPMLNRYDS 188
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 613 (220.8 bits), Expect = 2.2e-84, Sum P(4) = 2.2e-84
Identities = 148/447 (33%), Positives = 244/447 (54%)
Query: 539 AKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSK 598
+K TI + + N+ K+ + +L+A++LRRTK T IDG+PI+ LPPKT ++ D S
Sbjct: 597 SKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSS 656
Query: 599 EEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV--KEYDFDSV 656
E FY L+S + + + + GT+ +Y ++L++LLRLRQAC HP L+ +E D
Sbjct: 657 SEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDN 716
Query: 657 GKISGEMAKRLPRDMLIDLLSRLETSSAI-CCVCSDP-PEDSVVTMCGHVFCYQCASEYI 714
+ + + + + ++RL+ + C +C D E ++ CGH C +C + I
Sbjct: 717 DSFQAKN-RAIYNQIYPEAVNRLKLIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVI 775
Query: 715 TGDDNMCP-------APRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDN 767
T ++M +P+C + + + ++ L + G +P D L
Sbjct: 776 TSSEDMAKQTSNENISPKCS--VCEEYIDTERLLSYALFRRYSGM---APIVDADNKLRT 830
Query: 768 EYISSKI-RTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPI--EGPI-KSIVF 823
E IS + + +IL + ++ K H + A+++ I + P K ++F
Sbjct: 831 ENISELLPKQYSNILENR-QMGMKIFTDPKHWTTSTKIEKALNAVKEIIKKQPTDKILIF 889
Query: 824 SQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGL 883
SQ+ L+L Q I+Y G +S R++A+ +F D + V+L+SLKAGN+GL
Sbjct: 890 SQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGL 949
Query: 884 NMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRK 943
N+ A+HVI+LD +WNP E+QAVDRAHRIGQ +PV + R+ +T+E+R+L LQD KR+
Sbjct: 950 NLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRE 1009
Query: 944 MVASAFGEDQGGGTASRLTVEDLRYLF 970
++ SA GE +G SRL ++L +LF
Sbjct: 1010 LIDSALGE-KGLREISRLNTKELSFLF 1035
Score = 133 (51.9 bits), Expect = 2.2e-84, Sum P(4) = 2.2e-84
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
+N P + P GL+ L++HQK L W+ + E S GGILADD GLGKT+ +AL
Sbjct: 373 VNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESSKK--GGILADDMGLGKTVQALAL 429
Query: 317 IQMQRSLQSKS-KTEVL 332
+ + R +SKS KT ++
Sbjct: 430 L-VTRPPESKSVKTTLI 445
Score = 129 (50.5 bits), Expect = 2.2e-84, Sum P(4) = 2.2e-84
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT-KDPVELAKYDVVLTTYSIVTN 445
TL++ P S+L+QW E+ K+ +V I+HG S+ K +L YD+VLTTY+++
Sbjct: 443 TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAY 502
Query: 446 EVPKQPSVDEEEAD 459
E + + D+ D
Sbjct: 503 EFKNKMAYDKSIED 516
Score = 109 (43.4 bits), Expect = 2.2e-84, Sum P(4) = 2.2e-84
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSL-HGYKKLQAVLR 564
P + W+RV+LDEAQTIKN T AR CC L ST + +S + +G ++ ++++
Sbjct: 527 PFFEAEWYRVILDEAQTIKNRNTLAARGCCLLE---STYRWCLSGTPMQNGVEEFYSLIK 583
Query: 565 AIMLR 569
+ ++
Sbjct: 584 FLRIK 588
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 381 (139.2 bits), Expect = 2.3e-73, Sum P(4) = 2.3e-73
Identities = 80/153 (52%), Positives = 106/153 (69%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K I+FSQ+T +LDL+E + + +YRR DG+M R+ AV DF D VML+SLKA
Sbjct: 1022 KIIIFSQFTSLLDLLEIPIAREGHRYRRYDGSMKPADRNSAVLDFTDDPSCKVMLVSLKA 1081
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
GN GLN+VAA+HVI+ D +WNP E+QAVDRAHRIGQ R V V R+ + +TVEDRI++LQ
Sbjct: 1082 GNSGLNLVAANHVIIFDPFWNPYVEEQAVDRAHRIGQLREVHVHRILVPETVEDRIIELQ 1141
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 971
D KR ++ A E + A RL+ +L YLF+
Sbjct: 1142 DKKRAIIDGALDEKESKNIA-RLSTRELGYLFV 1173
Score = 274 (101.5 bits), Expect = 2.3e-73, Sum P(4) = 2.3e-73
Identities = 63/180 (35%), Positives = 101/180 (56%)
Query: 538 RAKRSTIKIPISRNSLHGYKK----LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTK 593
R KR P+ N+ H +K L+ +L+A++LRRTK + IDG+PI ++PP+
Sbjct: 682 RFKRD-FSAPLKTNNKHLQEKAMTQLRILLKAVLLRRTKHSKIDGKPIFDIPPRFSEKVH 740
Query: 594 VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF 653
FS++E YK LE+ + +F + +AGTV +NY+NIL++LLRLRQAC HP L+ ++
Sbjct: 741 AVFSEDELELYKALEAKTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHPHLITDFSV 800
Query: 654 DSVGKISGEMAKRLPRDMLIDLLSRLETSSAI-CCVCSDPPEDSVVTM-CGHVFCYQCAS 711
G ++++RL + + C VC D ++ ++ CGH C +C S
Sbjct: 801 KLNEASEGVDFIANAEQFSNEVVARLRDNENLECPVCIDAVDNPIIFFPCGHGTCSECFS 860
Score = 150 (57.9 bits), Expect = 2.3e-73, Sum P(4) = 2.3e-73
Identities = 76/273 (27%), Positives = 115/273 (42%)
Query: 81 LQMLPGFSDDHQMSNGQADDS--HYLSGNKNVGQLQ--------TVNPRIANVASADY-- 128
L P + +H S Q+ S H S + ++ ++ T NPRI + S Y
Sbjct: 270 LSAAPSLNANHAFSGPQSGSSKIHPDSDDSDLAEISPQDFQSRITSNPRITSRPS-QYVP 328
Query: 129 EKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYI 188
+ ++ + T + P++ + ++ N FGN+ P ++ S I
Sbjct: 329 NRGNADLGISNTAKSVQNPYAYHYPGPAAANGSNG------FGNSAMSRWPQSMPSAMAI 382
Query: 189 RDYYVKKNDDDIMMYEGNRILPSSLMHGKSVS--MTQFGGPSDLAYRSGSADERAVGGDE 246
Y K D++ N I PS + G ++ P+ LA R D GGD
Sbjct: 383 --Y---KGARDMLSGTTN-ISPSRMPLGNIITSGFLDDNYPTALAGRD-IRDFYEDGGDP 435
Query: 247 RLIYQAALEDLN--QPKVEATLPD-----GLLSVNLLKHQKIALAWMLQKETRSLHCLGG 299
+ I Q + L +P + + D L LL HQK+ LAWM KE GG
Sbjct: 436 KQINQEIKQLLETIRPDADLSAKDREGTPAALKYPLLDHQKLGLAWMRSKEECDQK--GG 493
Query: 300 ILADDQGLGKTISIIALIQMQRSLQSKSKTEVL 332
ILADD GLGKTI IAL+ + S + KT ++
Sbjct: 494 ILADDMGLGKTIQAIALMVSRPSSDPERKTTLI 526
Score = 122 (48.0 bits), Expect = 2.3e-73, Sum P(4) = 2.3e-73
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++ P ++++QW RE+E + L V I HG +L KYDVVLTT+ ++ +E
Sbjct: 524 TLIIAPVALMQQWKREIEKMLSPGHRLQVYILHGDKGRTSFSDLKKYDVVLTTFGMLASE 583
Query: 447 VPK 449
+ +
Sbjct: 584 LKR 586
Score = 105 (42.0 bits), Expect = 9.2e-56, Sum P(4) = 9.2e-56
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSL-HGYKKLQAVL 563
GP +K W+RV++DEAQ IKN TQ A ACC L +T + +S + + ++L ++L
Sbjct: 615 GPTSK--WYRVIIDEAQCIKNRATQSAIACCRLN---TTYRWCMSGTPMMNNVEELHSLL 669
Query: 564 RAIMLR 569
+ + +R
Sbjct: 670 KFLRIR 675
Score = 40 (19.1 bits), Expect = 4.4e-30, Sum P(2) = 4.4e-30
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 731 GADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGI--LDNEY-ISSKIRTVLDI 780
G V SK T N S + + +PF+ S LD+E+ + I +L +
Sbjct: 135 GVSVRSSKRTTGNIASPASTQAASSTPFSRNSPSDGLDSEFDVDDDILGILGL 187
>ZFIN|ZDB-GENE-030131-3306 [details] [associations]
symbol:hltf "helicase-like transcription factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518
ZFIN:ZDB-GENE-030131-3306 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619 OrthoDB:EOG47SSD6
EMBL:CR788256 IPI:IPI00500566 RefSeq:XP_693071.2 UniGene:Dr.105912
Ensembl:ENSDART00000099350 Ensembl:ENSDART00000132050 GeneID:564651
KEGG:dre:564651 NextBio:20885486 Uniprot:B0V118
Length = 942
Score = 340 (124.7 bits), Expect = 1.5e-70, Sum P(6) = 1.5e-70
Identities = 68/158 (43%), Positives = 108/158 (68%)
Query: 815 EGP-IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF--NTDREITV 871
E P +KS+V SQ+T LD++E +L ++ + RLDG++ AR +A++DF +T T+
Sbjct: 783 EDPTVKSMVVSQFTGFLDVLEVALREYGFSFTRLDGSLIQRARAKAIEDFQDSTPGSPTI 842
Query: 872 MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931
ML+SLKAG +GLN+ AAS V ++D WNP EDQ VDR HR+GQ+R V +T+ ++D+VE
Sbjct: 843 MLLSLKAGGVGLNLTAASQVFVMDPAWNPAAEDQCVDRCHRLGQSRDVVITKFIVKDSVE 902
Query: 932 DRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYL 969
+ ++K+Q K+++V AFG + A + ++D+R L
Sbjct: 903 ENMVKIQKKKQELVDKAFGV-KNSQDAKQARIDDIRAL 939
Score = 272 (100.8 bits), Expect = 1.5e-70, Sum P(6) = 1.5e-70
Identities = 60/187 (32%), Positives = 94/187 (50%)
Query: 544 IKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 603
I+ P++ G K LQA+++ I LRRTK + + G+ ++ LP + + + V S E
Sbjct: 558 IQRPVTMGDRVGLKNLQALVKGITLRRTKNSKVGGRTLVQLPERRVFVQYVTLSGMEREK 617
Query: 604 YKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEM 663
Y++++ + + GT NYA++L +L+RLRQ C HP LV Y V E+
Sbjct: 618 YERVKGEGKNIVGRYFQEGTFMANYADVLTILMRLRQCCCHPSLVGNYTAADVPGTPSEL 677
Query: 664 AKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPA 723
+RL + + + L S S C +C D V+T C HVFC C E I +
Sbjct: 678 RERLIQKITLVLNSG---SDEECAICLDSLRQPVITYCAHVFCRPCICEVIRSEKEQAKC 734
Query: 724 PRCKEQL 730
P C+ Q+
Sbjct: 735 PLCRAQI 741
Score = 129 (50.5 bits), Expect = 1.5e-70, Sum P(6) = 1.5e-70
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
A TL+VCP SVL W + E + + V +Y+G R + L++ DVVLTTY+++
Sbjct: 415 ARATLIVCPLSVLSNWLDQFEQHIRTDVTVKVYLYYGSERNRSVSLLSEQDVVLTTYNVL 474
Query: 444 TNEVPKQPS 452
+++ + S
Sbjct: 475 SSDFGNKAS 483
Score = 84 (34.6 bits), Expect = 1.5e-70, Sum P(6) = 1.5e-70
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILADD GLGKT++ IALI
Sbjct: 274 LGGILADDMGLGKTLTTIALI 294
Score = 78 (32.5 bits), Expect = 1.5e-70, Sum P(6) = 1.5e-70
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 501 DYG---CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSLHG 555
D+G PL V W RVVLDE ++N ++A L+++R I PI +NSL
Sbjct: 477 DFGNKASSPLHNVKWLRVVLDEGHVVRNPNALQSKAVLELQSERRWILSGTPI-QNSLKD 535
Query: 556 YKKLQAVLR 564
L + L+
Sbjct: 536 LFMLLSFLK 544
Score = 75 (31.5 bits), Expect = 1.5e-70, Sum P(6) = 1.5e-70
Identities = 27/94 (28%), Positives = 42/94 (44%)
Query: 204 EGNRILPSSLMHGKSVSMTQFGGPS------DLAYRSGSADERAVGGDE-RLIYQAALED 256
E NR + ++LM G ++ GG S DL S + +E + + +D
Sbjct: 148 EENREVVNNLMIGFGFNLDFRGGSSQTSLGRDLLGLSTKLSAIPLSAEELKNAFDKLFDD 207
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
L + K + P + LL HQK AL+WM +E
Sbjct: 208 LMEDKTKEMEPAEAVCTPLLSHQKQALSWMSSRE 241
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 352 (129.0 bits), Expect = 2.8e-70, Sum P(6) = 2.8e-70
Identities = 70/152 (46%), Positives = 106/152 (69%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K +V+SQ+++ L LV + L I++ R DGTMS R +++ FN D+++ VML+SLKA
Sbjct: 743 KILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLKA 802
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G++GLN+ A+HVIL + ++NP+ EDQA+DR HR+GQ +PVTV R +DT+E+RI+ +Q
Sbjct: 803 GSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQ 862
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
KR++V A ++ SRL E+L YLF
Sbjct: 863 RKKRQLVKEALDSNENN-PLSRLDKEELLYLF 893
Score = 212 (79.7 bits), Expect = 2.8e-70, Sum P(6) = 2.8e-70
Identities = 60/196 (30%), Positives = 91/196 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
K+L+ +L + + RRTK T ++ PI+NLPPKTI V+ EE A Y + S +
Sbjct: 475 KRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMSSAQSLVD 534
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKI-SGEMAKRLPRDMLIDL 675
+ + Y +L+ LLRLRQ C HP LVK D+ +I E + + +
Sbjct: 535 NYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIRDSENVRNACKSLDPLT 594
Query: 676 LSRLETSSAI-CCVCSDPPEDSV-VTMCGHVFCYQCASEYIT---GDDN----MCPAPRC 726
+ R+ T C VC DP V + CGH C +C S + G + + P C
Sbjct: 595 IERIATLQDFNCSVCLDPCLAPVFIIPCGHFTCQECMSMLVGQKYGSSSTSTIIAKCPMC 654
Query: 727 KEQLGADVVFSKTTLK 742
+ + D + T L+
Sbjct: 655 RGNIVQDSLVDATILQ 670
Score = 139 (54.0 bits), Expect = 2.8e-70, Sum P(6) = 2.8e-70
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELAKYDVVLTTYSIVTNE 446
L+V ++L QWA EL KV LSV I+HG ++ D EL++YDVVLTTYS++ E
Sbjct: 304 LIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYE 363
Query: 447 VPKQ 450
+ KQ
Sbjct: 364 M-KQ 366
Score = 131 (51.2 bits), Expect = 2.8e-70, Sum P(6) = 2.8e-70
Identities = 37/77 (48%), Positives = 45/77 (58%)
Query: 256 DLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA 315
DL Q K E GLL V+LL HQ AWM E +S C GG++ADD GLGKTI IA
Sbjct: 233 DL-QLKNEQVQSAGLL-VSLLPHQVEGHAWMESME-QSSKC-GGVMADDMGLGKTIQTIA 288
Query: 316 LIQMQRSLQSKSKTEVL 332
L+ Q+S KT ++
Sbjct: 289 LLLTQKSQDPLRKTNLI 305
Score = 93 (37.8 bits), Expect = 2.8e-70, Sum P(6) = 2.8e-70
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK-RSTIK-IPISRNSLHGYKKLQAVLR 564
L + W+R+VLDEA TI+N T A+ C L AK R + PI +N + + L LR
Sbjct: 386 LLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPI-QNHIDEFYSLLKFLR 444
Score = 44 (20.5 bits), Expect = 2.8e-70, Sum P(6) = 2.8e-70
Identities = 25/91 (27%), Positives = 36/91 (39%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQAL 137
Q LP F DH S S LS K Q + + N +++S +
Sbjct: 62 QSSSYSLPPF--DHPPSKNPTSSS--LSTRKRWRQKRLWS--FKNFPFRPPTRLTSTPSN 115
Query: 138 KRTLPAFPQPHSLNTKSKSSVENMNSSQIRD 168
+LP+ P S +T S SS+ + SS D
Sbjct: 116 SSSLPSIPS--SSSTPSISSIPHTTSSVSND 144
Score = 40 (19.1 bits), Expect = 7.3e-70, Sum P(6) = 7.3e-70
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 131 ISSQQALKRTLPAFPQPHSLNTKSKS 156
+ + Q+ +LP F P S N S S
Sbjct: 58 LQNSQSSSYSLPPFDHPPSKNPTSSS 83
Score = 37 (18.1 bits), Expect = 1.5e-69, Sum P(6) = 1.5e-69
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 147 PHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPST 181
PH+ ++ S + SS N HL PS+
Sbjct: 135 PHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSS 169
Score = 37 (18.1 bits), Expect = 3.6e-50, Sum P(5) = 3.6e-50
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 439 TYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
T S V+N++P + D N E S F K+ ++
Sbjct: 137 TTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQLSRL 179
>TAIR|locus:2158357 [details] [associations]
symbol:AT5G43530 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0009941 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AB016875 KO:K15505 OMA:PCAHRMC
HOGENOM:HOG000029930 ProtClustDB:CLSN2686824 IPI:IPI00529351
RefSeq:NP_199166.1 UniGene:At.55338 ProteinModelPortal:Q9FIY7
SMR:Q9FIY7 PaxDb:Q9FIY7 PRIDE:Q9FIY7 EnsemblPlants:AT5G43530.1
GeneID:834373 KEGG:ath:AT5G43530 GeneFarm:4653 TAIR:At5g43530
InParanoid:Q9FIY7 PhylomeDB:Q9FIY7 Genevestigator:Q9FIY7
GermOnline:AT5G43530 Uniprot:Q9FIY7
Length = 1277
Score = 361 (132.1 bits), Expect = 3.4e-70, Sum P(6) = 3.4e-70
Identities = 71/152 (46%), Positives = 106/152 (69%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
KSIVFSQWT LDL+E L + ++ R DG ++ R++ +K+FN ++ T++LMSLKA
Sbjct: 1129 KSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKA 1188
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G +GLN+ AAS V L+D WWNP E+QA+ R HRIGQ R V V R ++DTVE+R+ ++Q
Sbjct: 1189 GGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQ 1248
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
K++M+A A +++ ++RL E+L+ LF
Sbjct: 1249 ARKQRMIAGALTDEEV--RSARL--EELKMLF 1276
Score = 255 (94.8 bits), Expect = 3.4e-70, Sum P(6) = 3.4e-70
Identities = 80/254 (31%), Positives = 126/254 (49%)
Query: 544 IKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLTKVDFSKEEWA 602
I+ P G K ++A+LR +MLRRTK T +G I+ LPP + + + + S+ E
Sbjct: 883 IQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERD 942
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV------KEY-DFDS 655
FY L S +F F G V NYANIL +LLRLRQ C+HP LV ++Y D DS
Sbjct: 943 FYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDS 1002
Query: 656 VGKI-----SGEMAKRLP-RDMLIDLLSRL-ETSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ + +++ P R + +++ L + +S C +C + +D V+T C H C +
Sbjct: 1003 LARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRE 1062
Query: 709 CA-SEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDN 767
C + + + +CP C+ + +T L +C PTDS F + ++ N
Sbjct: 1063 CLLTSWRSPSCGLCPI--CR------TILKRTELISC--------PTDSIF--RVDVVKN 1104
Query: 768 EYISSKIRTVLDIL 781
SSK+ +L L
Sbjct: 1105 WKESSKVSELLKCL 1118
Score = 159 (61.0 bits), Expect = 3.4e-70, Sum P(6) = 3.4e-70
Identities = 31/61 (50%), Positives = 43/61 (70%)
Query: 386 GTLVVCPASVLRQWARELED-KVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 444
GTL++CP ++L QW ELE PD +SVL+Y+GG RT D +A +DVVLTTY ++T
Sbjct: 742 GTLIICPMALLSQWKDELETHSKPD--TVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLT 799
Query: 445 N 445
+
Sbjct: 800 S 800
Score = 85 (35.0 bits), Expect = 3.4e-70, Sum P(6) = 3.4e-70
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSL 537
++ W+R+VLDEA TIK+ +TQ A+A L
Sbjct: 813 RIDWYRIVLDEAHTIKSWKTQAAKATFEL 841
Score = 74 (31.1 bits), Expect = 3.4e-70, Sum P(6) = 3.4e-70
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVL 332
+Q T + GGILAD GLGKT+ IALI + + +VL
Sbjct: 671 IQFPTATQMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVL 716
Score = 51 (23.0 bits), Expect = 3.4e-70, Sum P(6) = 3.4e-70
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
A + N ++EA P L+ NL +QK AL WM + E
Sbjct: 597 AADSYNLEEMEA--PS-TLTCNLRPYQKQALYWMSESE 631
Score = 41 (19.5 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 574 TFIDGQPIINLPPKTISLTK----VDFSKEEWAFYKKLESDSLKKFK 616
T + +P+ + + + ++ V FS+E+ + Y K E +K K
Sbjct: 338 THVKMEPVEEIKVEAVKMSSQVEDVKFSREQKSVYVKKEPVGARKVK 384
Score = 40 (19.1 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 436 VLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
VL V + QPS ++ +++N + + + KR+K+
Sbjct: 250 VLEKKDEVIKVLEDQPSEINKKLEQENDDLFSSGDSDGTSAKRRKM 295
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 354 (129.7 bits), Expect = 1.4e-68, Sum P(6) = 1.4e-68
Identities = 75/153 (49%), Positives = 100/153 (65%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 877
IKSIVFSQ+T MLDLVE L + Q +L G+MS RD +K F + + V L+SLK
Sbjct: 638 IKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLK 697
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG + LN+ AS V +LD WWNP+ E Q+ DR HRIGQ RPV +TR I D++E RI++L
Sbjct: 698 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIEL 757
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
Q+ K M+ + +D+ SRLT DL++LF
Sbjct: 758 QEKKANMIHATINQDEAA--ISRLTPADLQFLF 788
Score = 188 (71.2 bits), Expect = 1.4e-68, Sum P(6) = 1.4e-68
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K + L + +Q +L+ IMLRRTK ++ + LPP+ +++ + F++EE Y
Sbjct: 420 KFGVEGPGLESFNNIQTLLKNIMLRRTK---VERADDLGLPPRIVTVRRDFFNEEEKDLY 476
Query: 605 KKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+ L +DS +K+ +F + G V NYANI ++ R+RQ DHP LV
Sbjct: 477 RSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLV 520
Score = 140 (54.3 bits), Expect = 1.4e-68, Sum P(6) = 1.4e-68
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
+LVV P L QW E+E K L + IYHG SRT D +L YDVVLTTY+++ +
Sbjct: 233 SLVVAPTVALMQWKNEIEQHT--KGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESV 290
Query: 447 VPKQ 450
KQ
Sbjct: 291 FRKQ 294
Score = 107 (42.7 bits), Expect = 1.4e-68, Sum P(6) = 1.4e-68
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
PDG+ ++ LL Q L W++ +E S++ GG+LAD+ G+GKTI IAL+
Sbjct: 177 PDGM-TIKLLPFQLEGLHWLISQE-ESIYA-GGVLADEMGMGKTIQTIALL 224
Score = 88 (36.0 bits), Expect = 1.4e-68, Sum P(6) = 1.4e-68
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 685 ICCVCSDPPEDSVVTMCGHVFCYQCASEYITG---DDNMCPAPRCKEQLGADVVFSKTTL 741
IC +C+D E+ + + C H FC C EY+ ++N P C +G + S+ L
Sbjct: 536 ICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPVC--HIGLSIDLSQPAL 593
Query: 742 K 742
+
Sbjct: 594 E 594
Score = 70 (29.7 bits), Expect = 1.4e-68, Sum P(6) = 1.4e-68
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR 541
L + ++RV+LDEA IK+ ++ ARA +L+ ++
Sbjct: 311 LHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQK 345
Score = 43 (20.2 bits), Expect = 1.1e-53, Sum P(6) = 1.1e-53
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 582 INLPPKT-ISLTKVDFSKEEWAFYKKLESD 610
+N+ P T TK D + ++W F ++ D
Sbjct: 368 LNINPFTKYFCTKCDCASKDWKFTDRMHCD 397
Score = 37 (18.1 bits), Expect = 1.8e-47, Sum P(4) = 1.8e-47
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 518 DEAQTIKNHRTQVARACCSLRAKRSTIKI-PISRNSLHGYK 557
DE T K +T + K+ + K+ P RN+L Y+
Sbjct: 112 DEPLT-KKRKTTARKKKKKTSTKKKSPKVTPYERNTLRLYE 151
Score = 37 (18.1 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 309 KTISIIALIQMQRSLQSKSKTEVL 332
K SI++ + M QS +K E L
Sbjct: 601 KKQSIVSRLNMSGKWQSSTKIEAL 624
>TAIR|locus:2207175 [details] [associations]
symbol:AT1G05120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
EMBL:CP002684 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15083 IPI:IPI00524131 RefSeq:NP_172004.1 UniGene:At.49853
ProteinModelPortal:F4I795 SMR:F4I795 EnsemblPlants:AT1G05120.1
GeneID:839319 KEGG:ath:AT1G05120 OMA:IGQYKPI Uniprot:F4I795
Length = 833
Score = 356 (130.4 bits), Expect = 1.3e-67, Sum P(5) = 1.3e-67
Identities = 97/275 (35%), Positives = 135/275 (49%)
Query: 701 CGHVFCYQCASEYITGDDNMCPAPRCKEQL-GADVVFSKTTLKNCVSDDGGGSPTDSPFA 759
CG C+ A +Y+ C CK L G K T C +
Sbjct: 579 CG--LCHDPAEDYVV---TSCAHVFCKACLIGFSASLGKVTCPTC---------SKLLTV 624
Query: 760 DKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPI----E 815
D + D E+ +SK T L LN +++ D S A+ + +
Sbjct: 625 DWTTKADTEHKASK--TTLKGFRASSILNR----IKLDDFQTSTKIEALREEIRFMVERD 678
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G K+IVFSQ+T LDL+ +L + + +L G+M++ ARD A+ F D + V LMS
Sbjct: 679 GSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMS 738
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
LKAG + LN+ ASHV ++D WWNP E QA DR HRIGQ +P+ V R I +TVE+RIL
Sbjct: 739 LKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERIL 798
Query: 936 KLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+LQ K + G Q +LT ED+R+LF
Sbjct: 799 RLQKKKELVFEGTVGGSQEA--IGKLTEEDMRFLF 831
Score = 216 (81.1 bits), Expect = 1.3e-67, Sum P(5) = 1.3e-67
Identities = 61/149 (40%), Positives = 81/149 (54%)
Query: 562 VLRAIMLRRTK-GTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD 620
VL+ I+LRRTK G D + LPP+ I+L + +E+ +Y+ L +S +F + +
Sbjct: 474 VLKDILLRRTKLGRAAD----LALPPRIITLRRDTLDVKEFDYYESLYKNSQAEFNTYIE 529
Query: 621 AGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLE 680
AGT+ NYA+I +L RLRQA DHP LV Y +S SG A L+D
Sbjct: 530 AGTLMNNYAHIFDLLTRLRQAVDHPYLVV-YS-NS----SGANAN------LVDE----N 573
Query: 681 TSSAICCVCSDPPEDSVVTMCGHVFCYQC 709
S C +C DP ED VVT C HVFC C
Sbjct: 574 KSEQECGLCHDPAEDYVVTSCAHVFCKAC 602
Score = 134 (52.2 bits), Expect = 1.3e-67, Sum P(5) = 1.3e-67
Identities = 29/64 (45%), Positives = 37/64 (57%)
Query: 384 AAG-TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
AAG TLV+CP + QW E+ + + VL+YHG R K+ E YD VLTTYS
Sbjct: 192 AAGCTLVLCPLVAVSQWLNEIA-RFTSPGSTKVLVYHGAKRAKNIKEFMNYDFVLTTYST 250
Query: 443 VTNE 446
V +E
Sbjct: 251 VESE 254
Score = 119 (46.9 bits), Expect = 1.3e-67, Sum P(5) = 1.3e-67
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 245 DERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADD 304
DE + L+ N E P L + LL++QK LAW ++E +S+ GGILAD+
Sbjct: 109 DEHMSEDVDLDQHNAVIAETAEPPSDLIMPLLRYQKEFLAWATKQE-QSV--AGGILADE 165
Query: 305 QGLGKTISIIALIQMQRSLQSKSKTEVLG 333
G+GKTI I+L+ +R + E G
Sbjct: 166 MGMGKTIQAISLVLARREVDRAQFGEAAG 194
Score = 78 (32.5 bits), Expect = 1.3e-67, Sum P(5) = 1.3e-67
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSLHG-YKKLQAVLRA 565
L V W R++LDEA IK R+ ARA +L A T + +S L +L +++R
Sbjct: 349 LHSVKWNRIILDEAHYIKERRSNTARAVFALEA---TYRWALSGTPLQNRVGELYSLIRF 405
Query: 566 IMLR 569
+ +R
Sbjct: 406 LQIR 409
>DICTYBASE|DDB_G0272082 [details] [associations]
symbol:DDB_G0272082 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 dictyBase:DDB_G0272082
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000007 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_001732968.1 EnsemblProtists:DDB0233429 GeneID:8618298
KEGG:ddi:DDB_G0272082 Uniprot:B0G105
Length = 1838
Score = 362 (132.5 bits), Expect = 4.3e-67, Sum P(7) = 4.3e-67
Identities = 72/153 (47%), Positives = 102/153 (66%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQWT MLDL+E LN + Q+ RLDG + R+ A+K F + + + L+S+KA
Sbjct: 1690 KCLIFSQWTSMLDLLEYPLNLNQFQFVRLDGKIPQKQREVAIKRFKEEPNVKIFLISIKA 1749
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LGLN+VAASHV L+D WWNP+TE+QA+DR +RIGQ + V V R I+D++E+RIL LQ
Sbjct: 1750 GGLGLNLVAASHVFLMDPWWNPSTEEQAIDRVYRIGQNKNVNVIRFLIKDSIEERILNLQ 1809
Query: 939 DDKRKMVASAFGEDQGGGTASRLT-VEDLRYLF 970
K+ + A T + T +E+L+ LF
Sbjct: 1810 KSKKDLAKEALN------TMKKQTRIEELKMLF 1836
Score = 201 (75.8 bits), Expect = 4.3e-67, Sum P(7) = 4.3e-67
Identities = 41/96 (42%), Positives = 62/96 (64%)
Query: 555 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKK 614
G+ +L+ +L I+LRR K I+ PI+ LP +TI + + FS+EE Y+ L + K
Sbjct: 1200 GFSRLRVLLSKILLRRLKDQKINNTPILKLPDRTIMIKRDIFSEEEEQIYQDLWKTAKTK 1259
Query: 615 FKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE 650
F +G++ +NYA++L MLLRLRQ CDHP LV++
Sbjct: 1260 FNNLFQSGSLLKNYAHVLEMLLRLRQVCDHPYLVQK 1295
Score = 137 (53.3 bits), Expect = 4.3e-67, Sum P(7) = 4.3e-67
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL+VCP SVL+QW E+ + +L+V IYHG +R +D L K+D++LTTY+ + E
Sbjct: 944 TLIVCPVSVLQQWHSEIINNT--NPSLNVYIYHGPNRNRDRSFLMKHDIILTTYTTLVAE 1001
Score = 81 (33.6 bits), Expect = 4.3e-67, Sum P(7) = 4.3e-67
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 686 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCP 722
C +C + E+ +T CGH FC C + + D + P
Sbjct: 1369 CTICMETLENPSITTCGHFFCTLCIQKNLIADTKLVP 1405
Score = 80 (33.2 bits), Expect = 4.3e-67, Sum P(7) = 4.3e-67
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRA 539
V WFRVVLDEA TIK T+ ++A +L +
Sbjct: 1120 VKWFRVVLDEAHTIKERSTRTSKATYALES 1149
Score = 76 (31.8 bits), Expect = 4.3e-67, Sum P(7) = 4.3e-67
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 298 GGILADDQGLGKTISIIALIQMQRS 322
GG+L DD G+GKTI IIA I +S
Sbjct: 884 GGLLCDDMGMGKTIEIIATILANKS 908
Score = 72 (30.4 bits), Expect = 4.3e-67, Sum P(7) = 4.3e-67
Identities = 37/188 (19%), Positives = 82/188 (43%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASA-DYEKISSQQA 136
Q++ Q H S+ + H+ SG+ V T P + ++ + + IS +
Sbjct: 409 QQQQQQQSNSHHHHNHSSNHHYNHHHSSGSNLVSPSPTTYPHYISSSTVWNQQYISFFSS 468
Query: 137 LKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYI-RDYYVKK 195
+ A S N + ++ NMN++ +++F ++ L PS N ++ + ++K
Sbjct: 469 SSASSSASVNIKSTNNNNNNNNNNMNNTISKESFIGSFILNVPSFENYSEFLNKQNLIEK 528
Query: 196 NDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALE 255
+ ++ Y G + + H K + + PS + + +E +G ++ L + + L
Sbjct: 529 INILVIRY-GCNVSLRFIAHLKQQDI-EMEKPSFNSNTYSNGNELVLG-EKSLSWLSILL 585
Query: 256 DLNQPKVE 263
+ N +VE
Sbjct: 586 EKNYIQVE 593
Score = 51 (23.0 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 94 SNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTK 153
S Q++ Y + + N Q+ N ++N + S+ + P +P S N
Sbjct: 1494 SRSQSESPRYKTNHLN----QSSNC-VSNTPTPLQSPHSTPHSTPPMSPRIIKPSSTNLV 1548
Query: 154 S---KSSVENMNSSQIRDTFGNAYHL 176
S KSS EN+ S+I ++ G A +L
Sbjct: 1549 SLSPKSSYENVPISKILNSSGGAQNL 1574
Score = 44 (20.5 bits), Expect = 8.4e-29, Sum P(7) = 8.4e-29
Identities = 19/82 (23%), Positives = 39/82 (47%)
Query: 798 DLAGSNGSSAVHSKSPIEGPIKSIVF--SQWTRMLDLVENSLNQHCIQYRRLDGTMSLPA 855
D A +N ++++ S + + I++ + S W+ LD + NS H Q+ G
Sbjct: 1303 DAADNNDNNSLDSDNDDKNKIQNNLNHESDWSTFLDFI-NSKPNHYNQFEL--GKCLKKI 1359
Query: 856 RDRAVKDFNTDREITVMLMSLK 877
+ +KD +E T+ + +L+
Sbjct: 1360 LGKGIKD----QECTICMETLE 1377
Score = 40 (19.1 bits), Expect = 3.4e-60, Sum P(6) = 3.4e-60
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 93 MSNGQADDSHYLSGNKNVGQLQTVN 117
+ N ++++Y + N N Q+Q N
Sbjct: 918 IENNNNNNNNYNNNNNNTNQVQQSN 942
Score = 39 (18.8 bits), Expect = 8.4e-63, Sum P(7) = 8.4e-63
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 746 SDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQ 784
+D+ + DS DK+ I +N S T LD ++++
Sbjct: 1305 ADNNDNNSLDSDNDDKNKIQNNLNHESDWSTFLDFINSK 1343
Score = 38 (18.4 bits), Expect = 2.9e-33, Sum P(4) = 2.9e-33
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 585 PPKTISLTKVDFSKEEWAFYKK-LESDSLKKFKAFADAGTVNQNYAN 630
P + ISL +D SK+ +F K L D + K T+ N +N
Sbjct: 864 PEEIISLVDLDGSKD-LSFVKGGLLCDDMGMGKTIEIIATILANKSN 909
Score = 37 (18.1 bits), Expect = 1.6e-63, Sum P(7) = 1.6e-63
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 94 SNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTK 153
+N ++S+ S N N N N S + ISS+ + P Q +
Sbjct: 198 NNNNNNNSNNSSNNNNNNNNNNNNNNNNNNNSC-FNAISSKSMFESQQPQQQQTQQTRSP 256
Query: 154 SKSS 157
++SS
Sbjct: 257 TRSS 260
Score = 37 (18.1 bits), Expect = 1.7e-32, Sum P(7) = 1.7e-32
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 884 NMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 918
N++ ++ + W + T D +D +++ + P
Sbjct: 1653 NLIKKKNIFNSNNWKSSTKIDSLLDELNKVFKNEP 1687
>MGI|MGI:1196437 [details] [associations]
symbol:Hltf "helicase-like transcription factor"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 UniPathway:UPA00143 MGI:MGI:1196437
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 GO:GO:0016568 GO:GO:0016887 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
EMBL:AF010138 EMBL:AF010600 EMBL:BC039796 EMBL:BC057116
EMBL:BC059240 IPI:IPI00315178 RefSeq:NP_033236.2 RefSeq:NP_659208.2
UniGene:Mm.209650 ProteinModelPortal:Q6PCN7 SMR:Q6PCN7
STRING:Q6PCN7 PhosphoSite:Q6PCN7 PRIDE:Q6PCN7
Ensembl:ENSMUST00000002502 GeneID:20585 KEGG:mmu:20585
UCSC:uc008osk.1 GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619
InParanoid:Q6PCN7 OrthoDB:EOG47SSD6 NextBio:298877 Bgee:Q6PCN7
CleanEx:MM_HLTF Genevestigator:Q6PCN7 GermOnline:ENSMUSG00000002428
Uniprot:Q6PCN7
Length = 1003
Score = 312 (114.9 bits), Expect = 4.8e-66, Sum P(6) = 4.8e-66
Identities = 63/135 (46%), Positives = 90/135 (66%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDR-EITVMLMS 875
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+ T+ML+S
Sbjct: 846 IKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLS 905
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
LKAG +GLN+ AAS V L+D WNP EDQ DR HR+GQ + V +T+ ++D+VE+ +L
Sbjct: 906 LKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENML 965
Query: 936 KLQDDKRKMVASAFG 950
K+Q+ KR + A AFG
Sbjct: 966 KIQNTKRDLAAGAFG 980
Score = 264 (98.0 bits), Expect = 4.8e-66, Sum P(6) = 4.8e-66
Identities = 73/249 (29%), Positives = 123/249 (49%)
Query: 544 IKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 603
I+ P++ G ++LQ++++ I LRRTK + I G+P++ LP + + + + S+EE
Sbjct: 612 IQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSEEERKI 671
Query: 604 YKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEM 663
Y+ ++++ + GTV +YA++L +LLRLRQ C H L+ S G +
Sbjct: 672 YQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLTN-GMSSSGPSRSDT 730
Query: 664 AKRLPRDMLIDLLSRLETSSAI--CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMC 721
+ L R MLI+ + + +S + C +C D V+T C HVFC C + I +
Sbjct: 731 PEEL-RKMLIEKMKIILSSGSDEECAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHA 789
Query: 722 PAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDIL 781
P C+ ++ D L C ++ DS DK ++ + SSKI ++
Sbjct: 790 KCPLCRNEIHGD------NLLECPPEE---LACDS---DKESSMEWKS-SSKINA---LM 833
Query: 782 HTQCELNTK 790
H EL TK
Sbjct: 834 HALIELRTK 842
Score = 133 (51.9 bits), Expect = 4.8e-66, Sum P(6) = 4.8e-66
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + V + L+ +Y+G R +D L+K D++LTTY+I+T++
Sbjct: 472 TLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTYNILTHD 531
Score = 90 (36.7 bits), Expect = 4.8e-66, Sum P(6) = 4.8e-66
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG 555
DYG PL + W RV+LDE I+N Q +A L A+R + PI +NSL
Sbjct: 531 DYGTKDDSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPI-QNSL-- 587
Query: 556 YKKLQAVLRAIMLR 569
K L ++L + L+
Sbjct: 588 -KDLWSLLSFLKLK 600
Score = 78 (32.5 bits), Expect = 4.8e-66, Sum P(6) = 4.8e-66
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALI 317
+++ ++H GGILADD GLGKT++ IA+I
Sbjct: 280 VKERPENVH--GGILADDMGLGKTLTAIAVI 308
Score = 64 (27.6 bits), Expect = 4.8e-66, Sum P(6) = 4.8e-66
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 250 YQAALEDLNQPKVEATL-PDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + + P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDRTVEMEPAEAIETPLLPHQKQALAWMIARE 255
Score = 45 (20.9 bits), Expect = 2.1e-38, Sum P(5) = 2.1e-38
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 534 CCSLRAKRSTIKIPISRNSLHGYKKLQ 560
C + +++ K P+ RN +HG L+
Sbjct: 779 CQVIHSEQPHAKCPLCRNEIHGDNLLE 805
>CGD|CAL0000717 [details] [associations]
symbol:orf19.5675 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0007533 "mating type
switching" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 CGD:CAL0000717
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000129
EMBL:AACQ01000128 RefSeq:XP_713356.1 RefSeq:XP_713403.1
ProteinModelPortal:Q59UP5 GeneID:3644990 GeneID:3645010
KEGG:cal:CaO19.13120 KEGG:cal:CaO19.5675 Uniprot:Q59UP5
Length = 1102
Score = 338 (124.0 bits), Expect = 1.2e-65, Sum P(7) = 1.2e-65
Identities = 75/162 (46%), Positives = 110/162 (67%)
Query: 810 SKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMSLPARDRAVKDFNTDRE 868
SK+P E K IVFSQ+T + DL+ L NQH I++ R DGTMS+ ++ +K+F +
Sbjct: 940 SKNPGE---KVIVFSQFTSLFDLMALVLQNQH-IEFLRYDGTMSMDVKNNVIKEFYQSSK 995
Query: 869 ITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928
V+L+SL+AGN GL + A+HV ++D +WNP E+QA+ RAHRIGQTR V V R+ I
Sbjct: 996 -NVLLLSLRAGNAGLTLTCANHVFIMDPFWNPFVEEQAMGRAHRIGQTREVFVHRVLIAG 1054
Query: 929 TVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
TVE+RI++LQ+ K+ ++ SA E +G + S+L +L +LF
Sbjct: 1055 TVENRIMELQESKKHLIESALDE-RGMKSISQLNRRELGFLF 1095
Score = 188 (71.2 bits), Expect = 1.2e-65, Sum P(7) = 1.2e-65
Identities = 60/151 (39%), Positives = 79/151 (52%)
Query: 535 CSLRAKRSTIKIPI-SRNSLHG-Y------KKLQAVLRAIMLRRTKGTFIDGQPIINLPP 586
CS R+ I PI S+ L+ Y KK+Q +L++I+LRRTK + IDG PI+NLP
Sbjct: 631 CSEEKFRADILTPIKSKTDLYDEYDVKESMKKIQVLLKSILLRRTKDSLIDGVPILNLPE 690
Query: 587 KTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPL 646
K + V +E A+Y+ +ES K K T N A L +LLRLRQAC H
Sbjct: 691 KHVLSDYVTLENDELAYYQSIESRVQKAAKKILGEHTKN---APALTLLLRLRQACCHSY 747
Query: 647 LVK--EYDF---DSVGKISGEMAKRLPRDML 672
LV+ EY DS + S +K R ML
Sbjct: 748 LVEIGEYRAKVKDSEAEASASNSKLDWRSML 778
Score = 142 (55.0 bits), Expect = 1.2e-65, Sum P(7) = 1.2e-65
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 255 EDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISII 314
EDL + +E T P+ L VNLLKHQ++ L WM + E GGILADD GLGKTI +
Sbjct: 408 EDLEEG-LEPTPPE--LKVNLLKHQRMGLTWMKRMEASKAK--GGILADDMGLGKTIQTL 462
Query: 315 ALIQMQR 321
AL+ + +
Sbjct: 463 ALMMVSK 469
Score = 138 (53.6 bits), Expect = 1.2e-65, Sum P(7) = 1.2e-65
Identities = 33/78 (42%), Positives = 44/78 (56%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELAK-YDVVLTTYSIVTN 445
L+V P S+LRQW E+E K LSV IYHG + K +L K YD+VL +Y+ +
Sbjct: 473 LIVAPVSLLRQWVAEIESKTKSDVFLSVGIYHGDDKKKMKDFDLMKEYDIVLVSYTTLVQ 532
Query: 446 EVPKQPSVD-EEEADEKN 462
E K S D +E E+N
Sbjct: 533 EWKKHFSEDLKEHQHERN 550
Score = 65 (27.9 bits), Expect = 1.2e-65, Sum P(7) = 1.2e-65
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 514 RVVLDEAQTIKNHRTQVARACCSLRAK 540
R++LDEAQ IKN + ++A LRA+
Sbjct: 575 RIILDEAQAIKNKQALASKAMTYLRAQ 601
Score = 56 (24.8 bits), Expect = 1.2e-65, Sum P(7) = 1.2e-65
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 679 LETSSAICCVCSD--PPEDSVVTM--CGHVFCYQCASEYI----TGDDN 719
+E + A C VC D E S++ CGH+ C C + + GDD+
Sbjct: 805 IENTPA-CPVCFDNIDIESSLLIFGECGHIICKGCCNTFFENCNAGDDD 852
Score = 49 (22.3 bits), Expect = 1.2e-65, Sum P(7) = 1.2e-65
Identities = 30/104 (28%), Positives = 40/104 (38%)
Query: 97 QADDSHYLSGNKN-VGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSK 155
QA D H KN + VN AN S Q +K+ P HS NT
Sbjct: 42 QATDQHEY---KNPFPTISAVNSASANTLPLR-PSFSHQPPIKK--PRLESLHSRNTSPF 95
Query: 156 SSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDD 199
S N+N++ + N LA P T + I + +DDD
Sbjct: 96 SLNHNINNNNM-----NPQLLARPIT-KPREPIEVIALSDSDDD 133
>ASPGD|ASPL0000049992 [details] [associations]
symbol:AN2256 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15711 HOGENOM:HOG000172619
EMBL:AACD01000037 RefSeq:XP_659860.1 ProteinModelPortal:Q5BB24
EnsemblFungi:CADANIAT00008948 GeneID:2874756 KEGG:ani:AN2256.2
OMA:IVGVRYY OrthoDB:EOG4G1QQQ Uniprot:Q5BB24
Length = 972
Score = 371 (135.7 bits), Expect = 1.9e-63, Sum P(6) = 1.9e-63
Identities = 75/152 (49%), Positives = 102/152 (67%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K+++FSQWT L LVE L IQ+ R+DG M+ ARDR+++ F+TD + TV+L SL
Sbjct: 819 KTVIFSQWTSFLTLVEPHLQNAGIQFARIDGKMTSIARDRSMRRFSTDPKCTVLLASLSV 878
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
++GLN+VAA+ IL D WW P EDQAVDR +R+GQTR TV RL + D++EDR+L +Q
Sbjct: 879 CSVGLNLVAANQAILADSWWAPAIEDQAVDRVYRLGQTRETTVWRLVMEDSIEDRVLAIQ 938
Query: 939 DDKRKMVASAFGEDQGGGTASRLT-VEDLRYL 969
+ KRK++ +AF E R T V DL L
Sbjct: 939 EQKRKLMLAAFREKASKKVDDRATRVADLEKL 970
Score = 184 (69.8 bits), Expect = 1.9e-63, Sum P(6) = 1.9e-63
Identities = 74/243 (30%), Positives = 111/243 (45%)
Query: 559 LQAVLRAIMLRRTKGT-FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
LQA++ I LRR K F++ + LP T + ++ F E Y +S++
Sbjct: 603 LQALMSTICLRRRKDMGFVN----LRLPTLTSRVLRIKFHPHEKEKYDMFQSEAKGMLLD 658
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKI--SGEMAKRLPRDM--LI 673
F Y+++L ++LRLRQ C+H L K D + I + P ++ L
Sbjct: 659 FKSNNKTGTTYSHLLEVILRLRQVCNHWALAKNR-LDKLAAILDKHQTVPLTPDNIKALQ 717
Query: 674 DLLS-RLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732
D+L R+E S IC +C D E V+T C H F + C + I + CP C+ ++
Sbjct: 718 DMLQIRIE-SQEICPICLDILETPVITACAHAFDHDCIEQVIVRQ-HKCPI--CRAEIE- 772
Query: 733 DVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDIL--HTQCELNTK 790
+K++L +D G TD AD DN SSKI ++ IL H Q E TK
Sbjct: 773 ----NKSSLVAPAADLGEN--TDDVSADP----DNP--SSKIEALIKILTAHGQVEA-TK 819
Query: 791 CSI 793
I
Sbjct: 820 TVI 822
Score = 113 (44.8 bits), Expect = 1.9e-63, Sum P(6) = 1.9e-63
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++ P ++ W ++++ + A VLIYHG R +D L YDVV+T+Y + E
Sbjct: 444 TLIISPVGIMSNWRNQIQEHTNPEQAPRVLIYHGPGRKED-ANLDHYDVVVTSYGTLATE 502
Score = 86 (35.3 bits), Expect = 1.9e-63, Sum P(6) = 1.9e-63
Identities = 21/31 (67%), Positives = 24/31 (77%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSK 328
GGILADD GLGKTI II+LI + S Q K+K
Sbjct: 410 GGILADDMGLGKTIQIISLI-LSNS-QPKTK 438
Score = 83 (34.3 bits), Expect = 1.9e-63, Sum P(6) = 1.9e-63
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA 539
L V W RVVLDE TI+N R++ A C+LRA
Sbjct: 515 LFSVKWRRVVLDEGHTIRNPRSKGFSAACALRA 547
Score = 69 (29.3 bits), Expect = 1.9e-63, Sum P(6) = 1.9e-63
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 256 DL-NQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSL 294
DL N P VE+ P L S LL +Q+ LAWM+ KE L
Sbjct: 338 DLENMPMVES--PSSL-STTLLPYQRQGLAWMISKENPGL 374
Score = 40 (19.1 bits), Expect = 5.3e-48, Sum P(4) = 5.3e-48
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 406 KVPD-KAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKN 462
K PD + S L G R + P + LT S EVP QP + E + +++
Sbjct: 6 KAPDSRKRFSYLNKVSGLRKRAPGWYILIRLQLTR-SPTKLEVPLQPKIMESRSTKRS 62
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 362 (132.5 bits), Expect = 4.9e-63, Sum P(5) = 4.9e-63
Identities = 72/154 (46%), Positives = 101/154 (65%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 877
IKSIVFSQ+T MLDL++ L + +L G+MS RD +K F + E+ V L+SLK
Sbjct: 700 IKSIVFSQFTSMLDLIQWRLKRAGFNTVKLSGSMSPQQRDNTIKHFMENTEVEVFLVSLK 759
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG + LN+ AS V L+D WWNP+ E Q++DR HRIGQ RP+ +TR I D++E +I++L
Sbjct: 760 AGGVALNLCEASQVFLMDPWWNPSVEWQSMDRVHRIGQKRPIRITRFCIEDSIESKIIEL 819
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 971
Q+ K M+ + D SRLT +DL++LFM
Sbjct: 820 QEKKANMIHATINNDDAA--ISRLTPDDLQFLFM 851
Score = 192 (72.6 bits), Expect = 4.9e-63, Sum P(5) = 4.9e-63
Identities = 64/242 (26%), Positives = 112/242 (46%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K I+ L G+ L+++L +MLRRTK I+ + LPP+ + + + F++EE Y
Sbjct: 477 KFGIAGLGLEGFNNLRSLLDHVMLRRTK---IERADDLGLPPRVVEIRRDFFNEEEKDLY 533
Query: 605 KKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP-LLVKEYDFDSVG-KISGE 662
+ L SDS +KF + G V NYANI ++ R+RQ DHP L++K +++ +I G
Sbjct: 534 QSLYSDSKRKFNDYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRVGSNAISNEIDGV 593
Query: 663 MAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCP 722
+ +L D + + + C +C +S + + C C D P
Sbjct: 594 IMCQLCDDEAEEPIES-KCHHRFCRMCIQEYMESFMGASNKLECPVC--HIGLSIDLEQP 650
Query: 723 APRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILH 782
A E+L F+K ++ N + G S ++ + + + S T+ I+
Sbjct: 651 AIEVDEEL-----FTKASIVNRIKSGAHGGEWRSSTKIEALVEELYKLRSDRHTIKSIVF 705
Query: 783 TQ 784
+Q
Sbjct: 706 SQ 707
Score = 133 (51.9 bits), Expect = 4.9e-63, Sum P(5) = 4.9e-63
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447
LV+ P L QW E+E K + L VL+YHG +R+ EL++YDV+LT+YS++ +
Sbjct: 290 LVIGPTVALMQWKNEIE-KHTEPGMLKVLLYHGSNRSNSIQELSQYDVILTSYSVLESVY 348
Query: 448 PKQ 450
KQ
Sbjct: 349 RKQ 351
Score = 107 (42.7 bits), Expect = 4.9e-63, Sum P(5) = 4.9e-63
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 258 NQPKV---EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISII 314
N PK+ A P G+ ++ LL Q L W++++E + GGILAD+ G+GKTI I
Sbjct: 221 NTPKITPERAEHPPGM-TIKLLPFQLEGLNWLIKQEDGEFN--GGILADEMGMGKTIQTI 277
Query: 315 ALIQMQRS 322
L RS
Sbjct: 278 GLFMHDRS 285
Score = 65 (27.9 bits), Expect = 4.9e-63, Sum P(5) = 4.9e-63
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKR 541
+ ++RV+LDEA IK+ + +RA L K+
Sbjct: 371 IEFYRVILDEAHNIKDRNSNTSRAAGKLNTKK 402
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 347 (127.2 bits), Expect = 1.6e-62, Sum P(5) = 1.6e-62
Identities = 69/152 (45%), Positives = 105/152 (69%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
KSI+FSQWT LDL++ L+++ + RLDGT+S R++ +K+F+ D I V+LMSLKA
Sbjct: 881 KSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKA 940
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G +G+N+ AAS+ ++D WWNP E+QAV R HRIGQT+ V + R ++ TVE+R+ +Q
Sbjct: 941 GGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQ 1000
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
K++M++ A DQ +A +E+L+ LF
Sbjct: 1001 ARKQRMISGAL-TDQEVRSAR---IEELKMLF 1028
Score = 210 (79.0 bits), Expect = 1.6e-62, Sum P(5) = 1.6e-62
Identities = 47/106 (44%), Positives = 62/106 (58%)
Query: 544 IKIPISRNSLHGYKKLQAVLRAIMLRRTKG-TFIDGQPIINLPPKTISLTKVDFSKEEWA 602
++ P G K +Q++L+ IMLRRTK T +G+PI+ LPP + + S+ E
Sbjct: 634 VQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERD 693
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
FY L S KF F + G V NYA+IL +LLRLRQ CDHP LV
Sbjct: 694 FYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLV 739
Score = 169 (64.5 bits), Expect = 1.6e-62, Sum P(5) = 1.6e-62
Identities = 49/159 (30%), Positives = 75/159 (47%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEXXXXXXXXXXXXXXXXKVK 357
GGILAD GLGKT+ I+L+ + S ++ S + N + + K
Sbjct: 414 GGILADAMGLGKTVMTISLL-LAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATK 472
Query: 358 ETGESDDIKPVPEVXXXXXXXXXXXPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLI 417
G + V G L+VCP ++L QW E+E +LSV +
Sbjct: 473 FLGFDKRLLEQKSVLQN----------GGNLIVCPMTLLGQWKTEIEMHAKP-GSLSVYV 521
Query: 418 YHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEE 456
++G SR KD L++ DVV+TTY ++T+E ++ S D E
Sbjct: 522 HYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHE 560
Score = 95 (38.5 bits), Expect = 1.1e-50, Sum P(5) = 1.1e-50
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRS--TIKIPISRNSLHGYKKLQAVLR 564
V WFR+VLDEA TIKN ++Q++ A +L A R PI +N+L L LR
Sbjct: 565 VRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPI-QNNLEDLYSLLRFLR 620
Score = 81 (33.6 bits), Expect = 1.6e-62, Sum P(5) = 1.6e-62
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 657 GKISG--EMAKRLPRDMLI-DLLSRLETSS-AICCVCSDPPEDSVVTMCGHVFCYQCA-S 711
GK SG K +P + + +++ L C +C + ED+V+T C H C +C +
Sbjct: 761 GKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLA 820
Query: 712 EYITGDDNMCPAPR 725
+ +CP R
Sbjct: 821 SWRNSTSGLCPVCR 834
Score = 57 (25.1 bits), Expect = 1.6e-62, Sum P(5) = 1.6e-62
Identities = 38/149 (25%), Positives = 56/149 (37%)
Query: 146 QPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYI-RDYYVKKNDDDIMMYE 204
Q HS T K++ S N + L G + D+Y KK + +
Sbjct: 233 QKHSA-TSFKTASNTAEESMFHP-LPNLFRLLGLIPFKKAEFTPEDFYSKKRP--LSSKD 288
Query: 205 GNRILPSSLMH-GKSVSMTQF--GGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPK 261
G+ I P+SL+ K +M Q G ++ G D GD + L+++ P
Sbjct: 289 GSAI-PTSLLQLNKVKNMNQDANGDENEQCISDGDLDNIVGVGDS-----SGLKEMETPH 342
Query: 262 VEATLPDGLLSVNLLKHQKIALAWMLQKE 290
L L +QK AL WM Q E
Sbjct: 343 T--------LLCELRPYQKQALHWMTQLE 363
Score = 39 (18.8 bits), Expect = 3.6e-47, Sum P(5) = 3.6e-47
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 244 GDERLIYQAALEDLNQPKVEAT 265
GD+ + ++++DL P V+AT
Sbjct: 452 GDK--VISSSVDDLTSPPVKAT 471
Score = 38 (18.4 bits), Expect = 1.4e-60, Sum P(5) = 1.4e-60
Identities = 18/96 (18%), Positives = 34/96 (35%)
Query: 151 NTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILP 210
N + + E++N GN + G S + + +K D+ + + ++ L
Sbjct: 87 NHRVEEENESVNGGGEESVSGNEWWFVGCSELAGLSTCKGRKLKSGDELVFTFPHSKGLK 146
Query: 211 SSLMHGK---SVSMTQFGGPSDLAYRSGSADERAVG 243
GK G SD+ R + D +G
Sbjct: 147 PETTPGKRGFGRGRPALRGASDIV-RFSTKDSGEIG 181
Score = 38 (18.4 bits), Expect = 2.3e-47, Sum P(4) = 2.3e-47
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 203 YEGNRILPSSL--MHGKSVSMTQFGG 226
YEG++++ SS+ + V T+F G
Sbjct: 450 YEGDKVISSSVDDLTSPPVKATKFLG 475
>SGD|S000005717 [details] [associations]
symbol:ULS1 "Protein involved in proteolytic control of
sumoylated substrates" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0006333 "chromatin assembly or disassembly"
evidence=IGI;IMP;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000005717
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005730
EMBL:BK006948 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 GO:GO:0007533 GeneTree:ENSGT00700000104545
EMBL:Z75099 PIR:S67083 RefSeq:NP_014834.1 ProteinModelPortal:Q08562
SMR:Q08562 DIP:DIP-996N IntAct:Q08562 MINT:MINT-426553
STRING:Q08562 PaxDb:Q08562 EnsemblFungi:YOR191W GeneID:854363
KEGG:sce:YOR191W CYGD:YOR191w HOGENOM:HOG000065999 OMA:NENMNMS
OrthoDB:EOG4NZZ2M NextBio:976476 Genevestigator:Q08562
GermOnline:YOR191W Uniprot:Q08562
Length = 1619
Score = 451 (163.8 bits), Expect = 2.0e-62, Sum P(4) = 2.0e-62
Identities = 146/439 (33%), Positives = 226/439 (51%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+K++ +L AIMLRR+K IDG+P++ LPPK + + + EE FY LES + K
Sbjct: 1191 RKVRVLLNAIMLRRSKADKIDGKPLLELPPKIVEVDESRLKGEELKFYTALESKNQALAK 1250
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV----KEYDFDSV--GKISGEMAKRLP-- 668
+ T +Y+++L +LLRLRQAC H LV K+ + V GK + RL
Sbjct: 1251 KLLNNST-RGSYSSVLTLLLRLRQACCHSELVVMGEKKAEGTKVANGKSFEDDWLRLYYK 1309
Query: 669 -RDMLIDLLSRLETS--SAICCVCSDP--PED-SVVTMCGHVFCYQCASEYITGDDNMCP 722
M + +++ TS S C C + PE SV+T CGH+ C C +I + +M P
Sbjct: 1310 ITHMSGEAQAQVITSMNSMTCFWCMEQLEPEAMSVLTGCGHLICDTCIEPFIE-ESSMLP 1368
Query: 723 APRCKEQLGADVVFSK-----TTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTV 777
+ K + GA + K T K+ VS + F ++ L EY+S +
Sbjct: 1369 QAK-KTKGGAFAIPCKDCQRLTNEKDIVSHKLYDQVINQGFTEED--LHAEYLSEMEKQK 1425
Query: 778 L---DILHTQCE-LNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLV 833
+ ++ E L I + + V +S E K I+FSQ+T +++
Sbjct: 1426 IQQKNVYVPNFESLEPSTKIEQCIQVI-----QRVFDESATE---KIIIFSQFTTFFEIL 1477
Query: 834 ENSL-NQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 892
E+ L N+ Y + G+M+ R + +F D E ++L+S+KAGN GL + A+HV+
Sbjct: 1478 EHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPEKRILLISMKAGNSGLTLTCANHVV 1537
Query: 893 LLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGED 952
++D +WNP E+QA DR +RI QT+ V V +L I+D+VEDRI +LQ K++MV SA D
Sbjct: 1538 IVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVDSAM--D 1595
Query: 953 QGG-GTASRLTVEDLRYLF 970
G + L +L +LF
Sbjct: 1596 PGKIKEVNSLGRRELGFLF 1614
Score = 168 (64.2 bits), Expect = 2.0e-62, Sum P(4) = 2.0e-62
Identities = 42/92 (45%), Positives = 59/92 (64%)
Query: 245 DERLIYQAALEDLNQPKV----EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGI 300
D+ I +A LE++ Q + EA P+ + +VNLLKHQ++ L W+LQ E + GG+
Sbjct: 911 DQEQI-RALLENVKQSESIIDGEALTPEDM-TVNLLKHQRLGLHWLLQVENSAKK--GGL 966
Query: 301 LADDQGLGKTISIIALIQMQRSLQSKSKTEVL 332
LADD GLGKTI IAL+ RS +SK KT ++
Sbjct: 967 LADDMGLGKTIQAIALMLANRSEESKCKTNLI 998
Score = 123 (48.4 bits), Expect = 2.0e-62, Sum P(4) = 2.0e-62
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS---RTKDPVELAKYDVVLTTYSIVT 444
L+V P SVLR W ELE KV +A + I+ GGS + K +LA+YD VL +Y +
Sbjct: 997 LIVAPVSVLRVWKGELETKVKKRAKFTTFIF-GGSGNGKVKHWRDLARYDAVLVSYQTLA 1055
Query: 445 NEVPKQ-PS-VDEEE 457
NE K P +D E+
Sbjct: 1056 NEFKKHWPKKLDGEQ 1070
Score = 82 (33.9 bits), Expect = 2.0e-62, Sum P(4) = 2.0e-62
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAK-RSTIK-IPISRNSLHGYKKLQAVLR 564
++R++LDE Q IKN T+ ++ACC++ R + PI +NS+ L LR
Sbjct: 1102 FYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPI-QNSMDELYSLIRFLR 1155
Score = 38 (18.4 bits), Expect = 6.5e-49, Sum P(4) = 6.5e-49
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 304 DQGLGK-TISIIALIQMQRSLQSKSKTEVLGNQKT 337
DQ L + T+S Q+ +Q K LG+Q+T
Sbjct: 625 DQMLKEGTLSFSTYKQLTGEIQQKLNDLKLGDQRT 659
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 326 (119.8 bits), Expect = 1.0e-61, Sum P(6) = 1.0e-61
Identities = 65/153 (42%), Positives = 101/153 (66%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 877
+KSIVFSQ+T MLDL+ L + +LDG M+ AR ++ F+ D IT+ L+SLK
Sbjct: 709 LKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLK 768
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG + LN+ AS V ++D WWN + QA+DR HRIGQ RP+ V L I +++E +I++L
Sbjct: 769 AGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIEL 828
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
Q+ K +M+ + +D+ ++L+VED+++LF
Sbjct: 829 QEKKAQMIHATIDQDEKA--LNQLSVEDMQFLF 859
Score = 177 (67.4 bits), Expect = 1.0e-61, Sum P(6) = 1.0e-61
Identities = 38/93 (40%), Positives = 57/93 (61%)
Query: 556 YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 615
+KK+ ++L+ IMLRRTK ++ + LPP+ + + K F++EE Y+ L DS +KF
Sbjct: 502 FKKVHSLLKHIMLRRTK---LERADDLGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKF 558
Query: 616 KAFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+ G V NYANI ++ R+RQ DHP LV
Sbjct: 559 NTYLAEGVVLNNYANIFQLITRMRQMADHPDLV 591
Score = 117 (46.2 bits), Expect = 1.0e-61, Sum P(6) = 1.0e-61
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TLVV P + QW E+ D +KA LS +Y+G +R EL+ YDVVLT+Y+++ +
Sbjct: 304 TLVVAPVVAIMQWKEEI-DTHTNKA-LSTYLYYGQARDISGEELSSYDVVLTSYNVIESV 361
Query: 447 VPKQPS 452
K+ S
Sbjct: 362 YRKERS 367
Score = 98 (39.6 bits), Expect = 1.0e-61, Sum P(6) = 1.0e-61
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +NLL Q+ + W+ ++E S GGILAD+ G+GKTI IAL+
Sbjct: 251 LVLNLLPFQREGVYWLKRQEDSSFG--GGILADEMGMGKTIQTIALL 295
Score = 95 (38.5 bits), Expect = 1.0e-61, Sum P(6) = 1.0e-61
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 685 ICCVCSDPPEDSVVTMCGHVFCYQCASEYIT--GDDNMCPAPRCKEQLGADV 734
+C +C + +D++ + C H FC C +EYI GD P C L D+
Sbjct: 608 VCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDL 659
Score = 77 (32.2 bits), Expect = 1.0e-61, Sum P(6) = 1.0e-61
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSLHG-YKKLQAVLR 564
L ++ ++R++LDEA IK+ ARA C LR R KI +S L +L ++LR
Sbjct: 382 LHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTR---KICLSGTPLQNRIGELFSLLR 437
Score = 38 (18.4 bits), Expect = 1.6e-30, Sum P(6) = 1.6e-30
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 743 NCVSDDGGGSP 753
NCV DGG +P
Sbjct: 734 NCVKLDGGMTP 744
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 339 (124.4 bits), Expect = 1.2e-61, Sum P(6) = 1.2e-61
Identities = 68/158 (43%), Positives = 104/158 (65%)
Query: 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVML 873
+ G K+I+FSQ+T LD+++ L + I + R DG M+ AR++++ +D V+L
Sbjct: 667 VRGLRKTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLL 726
Query: 874 MSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDR 933
SLK G LGLN+ AS VIL D+WWNP E+QA+DR HRIGQ R V V +L + +T+E++
Sbjct: 727 CSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEK 786
Query: 934 ILKLQDDKRKMVASAFGEDQGGG-TASRLTVEDLRYLF 970
I++LQ+ KR + A G+ + T+ +LT+ DL +LF
Sbjct: 787 IVELQNLKRDLAKQALGDGKKSVFTSKKLTLNDLLFLF 824
Score = 169 (64.5 bits), Expect = 1.2e-61, Sum P(6) = 1.2e-61
Identities = 53/175 (30%), Positives = 85/175 (48%)
Query: 541 RSTIKIPISRNSLH-GYKKLQAVLRAIMLRRTKGTFI------DGQP-IINLPPKTISLT 592
+ I +P+ + + +K+L+ +L IMLRRTK T + DG + L + +
Sbjct: 442 KDQISLPLCQGEENLVFKRLRMLLSVIMLRRTK-TLLEANAGKDGTGGALKLSKRLVYKV 500
Query: 593 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK--- 649
F + E FY L + + F ++G + +NY NIL +LLRLRQAC+HP +
Sbjct: 501 ICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQSLNFQF 560
Query: 650 EYDFDSVGKISGEM-AKRLPRDMLID-LLSRLET------SSAICCVC-SDPPED 695
E D D+ + G +L D +D L + LET + C +C ++ P D
Sbjct: 561 EQDVDAFNALDGAANTNKLASDQDVDDLANLLETVEIGSRKKSFCTICMAELPPD 615
Score = 130 (50.8 bits), Expect = 1.2e-61, Sum P(6) = 1.2e-61
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TLVV P S+++QW E +V K+ L+ ++YHG SR K + +YDVV+TTY I+ +E
Sbjct: 291 TLVVAPLSLIKQW----ESEVQTKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVSE 346
Score = 116 (45.9 bits), Expect = 1.2e-61, Sum P(6) = 1.2e-61
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCL-GGILADDQGLGKTISIIALI 317
+ + LL HQ L W+ +ET S GGILADD GLGKTI +IALI
Sbjct: 229 MHIRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALI 276
Score = 90 (36.7 bits), Expect = 1.2e-61, Sum P(6) = 1.2e-61
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLR 538
W+R++LDEA TIKN ++ A ACC+L+
Sbjct: 378 WWRIILDEAHTIKNKSSKSALACCALQ 404
Score = 42 (19.8 bits), Expect = 6.5e-11, Sum P(3) = 6.5e-11
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 797 HDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLD 831
H+ G++G S +KS + F W +LD
Sbjct: 350 HNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILD 384
Score = 41 (19.5 bits), Expect = 1.2e-61, Sum P(6) = 1.2e-61
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 760 DKSGILD-NE---YISSKIRTVLDIL 781
DK GI D N+ Y SSKIR +L IL
Sbjct: 632 DK-GIQDPNDKTLYKSSKIREILKIL 656
>UNIPROTKB|I3LM88 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:CU915669 EMBL:FP476099 Ensembl:ENSSSCT00000023239
Uniprot:I3LM88
Length = 1011
Score = 313 (115.2 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 65/155 (41%), Positives = 99/155 (63%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDR-EITVMLMS 875
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+ T+ML+S
Sbjct: 854 IKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLS 913
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
LKAG +GLN+ AAS V L+D WNP EDQ DR HR+GQ + V +T+ ++D+VE+ +L
Sbjct: 914 LKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENML 973
Query: 936 KLQDDKRKMVASAFGEDQGGGTASRLT-VEDLRYL 969
K+Q+ KR++ A AFG + + + + ++R L
Sbjct: 974 KIQNTKRELAAGAFGTKKTNASEMKQAKINEIRTL 1008
Score = 259 (96.2 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 57/192 (29%), Positives = 98/192 (51%)
Query: 543 TIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWA 602
TI+ P++ G ++LQ++++ I LRRTK + I G+P++ LP + + + + S EE
Sbjct: 619 TIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERK 678
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGE 662
Y+ +++D + + GTV +YA++L +LLRLRQ C H L+ S G +
Sbjct: 679 IYQSVKNDGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNA-VSSSGPSGND 737
Query: 663 MAKRLPRDMLIDLLSRLETSS-AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMC 721
+ L + ++ + L + S C +C D V+T C HVFC C + I +
Sbjct: 738 TPEELRKKLIKKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHA 797
Query: 722 PAPRCKEQLGAD 733
P C+ + D
Sbjct: 798 KCPLCRNDIHGD 809
Score = 140 (54.3 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + + L+ +Y+G R +DP L+K D+VLTTY+I+T++
Sbjct: 480 TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRVRDPALLSKQDIVLTTYNILTHD 539
Score = 90 (36.7 bits), Expect = 5.5e-44, Sum P(5) = 5.5e-44
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG 555
DYG PL + W RV+LDE I+N Q +A L A+R + PI +NSL
Sbjct: 539 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPI-QNSL-- 595
Query: 556 YKKLQAVLRAIMLR 569
K L ++L + L+
Sbjct: 596 -KDLWSLLSFLKLK 608
Score = 77 (32.2 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILADD GLGKT++ IA+I
Sbjct: 289 GGILADDMGLGKTLTAIAVI 308
Score = 67 (28.6 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + K P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDKTHEMEPAEAVETPLLPHQKQALAWMVSRE 255
Score = 45 (20.9 bits), Expect = 2.3e-15, Sum P(5) = 2.3e-15
Identities = 18/92 (19%), Positives = 35/92 (38%)
Query: 576 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-M 634
I G ++ PP+ ++ S EW K+ + A D N N ++++
Sbjct: 806 IHGDNLLECPPEELACDTEKKSNMEWTSSSKINA----LMHALIDLRKKNPNIKSLVVSQ 861
Query: 635 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 666
+ PL + F ++ G MA++
Sbjct: 862 FTTFLSLIETPLRASGFVFT---RLDGSMAQK 890
Score = 43 (20.2 bits), Expect = 3.3e-39, Sum P(5) = 3.3e-39
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 534 CCSLRAKRSTIKIPISRNSLHGYKKLQ 560
C ++ ++ K P+ RN +HG L+
Sbjct: 787 CQVIQNEQPHAKCPLCRNDIHGDNLLE 813
>UNIPROTKB|F1MLM2 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:DAAA02002705 EMBL:DAAA02002706 IPI:IPI00883352
Ensembl:ENSBTAT00000034508 Uniprot:F1MLM2
Length = 1009
Score = 313 (115.2 bits), Expect = 2.8e-61, Sum P(5) = 2.8e-61
Identities = 65/155 (41%), Positives = 99/155 (63%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDR-EITVMLMS 875
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+ T+ML+S
Sbjct: 852 IKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLS 911
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
LKAG +GLN+ AAS V L+D WNP EDQ DR HR+GQ + V +T+ ++D+VE+ +L
Sbjct: 912 LKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENML 971
Query: 936 KLQDDKRKMVASAFGEDQGGGTASRLT-VEDLRYL 969
K+Q+ KR++ A AFG + + + + ++R L
Sbjct: 972 KIQNTKRELAAGAFGTKKTNASEMKQAKINEIRTL 1006
Score = 255 (94.8 bits), Expect = 2.8e-61, Sum P(5) = 2.8e-61
Identities = 56/192 (29%), Positives = 98/192 (51%)
Query: 543 TIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWA 602
TI+ P++ G ++LQ++++ I LRRTK + I G+P++ LP + + + + S EE
Sbjct: 617 TIQRPVTMGDEAGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERK 676
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGE 662
Y+ ++++ + + GTV +YA++L +LLRLRQ C H L+ S G +
Sbjct: 677 IYQSVKNEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLANA-VSSSGPSGND 735
Query: 663 MAKRLPRDMLIDLLSRLETSS-AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMC 721
+ L + ++ + L + S C +C D V+T C HVFC C + I +
Sbjct: 736 TPEELRKKLIKKMKLILSSGSDEECAICLDSLMAPVITHCAHVFCKPCICQVIQNEQPHA 795
Query: 722 PAPRCKEQLGAD 733
P C+ + D
Sbjct: 796 KCPLCRNDIHGD 807
Score = 140 (54.3 bits), Expect = 2.8e-61, Sum P(5) = 2.8e-61
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + + L+ +Y+G R +DP L+K D+VLTTY+I+T++
Sbjct: 478 TLIICPLSVLSNWMDQFGQHIKSDVHLNFYVYYGPDRVRDPTLLSKQDIVLTTYNILTHD 537
Score = 90 (36.7 bits), Expect = 2.7e-44, Sum P(5) = 2.7e-44
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG 555
DYG PL + W RV+LDE I+N Q +A L A+R + PI +NSL
Sbjct: 537 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPI-QNSL-- 593
Query: 556 YKKLQAVLRAIMLR 569
K L ++L + L+
Sbjct: 594 -KDLWSLLSFLKLK 606
Score = 77 (32.2 bits), Expect = 2.8e-61, Sum P(5) = 2.8e-61
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILADD GLGKT++ IA+I
Sbjct: 289 GGILADDMGLGKTLTAIAVI 308
Score = 70 (29.7 bits), Expect = 2.8e-61, Sum P(5) = 2.8e-61
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + K + P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDKTQEMEPAEAIETPLLPHQKQALAWMVSRE 255
Score = 49 (22.3 bits), Expect = 4.6e-16, Sum P(5) = 4.6e-16
Identities = 19/92 (20%), Positives = 35/92 (38%)
Query: 576 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-M 634
I G +I PP+ ++ S EW K+ + A D N N ++++
Sbjct: 804 IHGDSLIECPPEELACNTEKKSNMEWTSSSKINA----LMHALIDLRKKNPNIKSLVVSQ 859
Query: 635 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 666
+ PL + F ++ G MA++
Sbjct: 860 FTTFLSLIETPLRASGFVFT---RLDGSMAQK 888
Score = 42 (19.8 bits), Expect = 2.0e-39, Sum P(5) = 2.0e-39
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 534 CCSLRAKRSTIKIPISRNSLHG 555
C ++ ++ K P+ RN +HG
Sbjct: 785 CQVIQNEQPHAKCPLCRNDIHG 806
Score = 42 (19.8 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 145 PQPHSLNTKSKSSVENMNSSQI 166
P+ + NT+ KS++E +SS+I
Sbjct: 814 PEELACNTEKKSNMEWTSSSKI 835
>UNIPROTKB|E2R9I5 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:6596 KO:K15711 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:AAEX03013671 RefSeq:XP_534300.3 Ensembl:ENSCAFT00000013176
GeneID:477106 KEGG:cfa:477106 Uniprot:E2R9I5
Length = 1007
Score = 313 (115.2 bits), Expect = 3.5e-61, Sum P(5) = 3.5e-61
Identities = 65/155 (41%), Positives = 98/155 (63%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDR-EITVMLMS 875
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+ T+ML+S
Sbjct: 850 IKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLS 909
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
LKAG +GLN+ AAS V L+D WNP EDQ DR HR+GQ + V +T+ ++D+VE+ +L
Sbjct: 910 LKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENML 969
Query: 936 KLQDDKRKMVASAFGEDQ-GGGTASRLTVEDLRYL 969
K+Q+ KR++ A AFG + + + ++R L
Sbjct: 970 KIQNTKRELAAGAFGTKKTNANEMKQAKINEIRTL 1004
Score = 257 (95.5 bits), Expect = 3.5e-61, Sum P(5) = 3.5e-61
Identities = 63/196 (32%), Positives = 101/196 (51%)
Query: 543 TIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWA 602
TI+ P++ G ++LQ++++ I LRRTK + I G+P++ LP + + + + S EE
Sbjct: 615 TIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERK 674
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISG- 661
Y+ ++++ + + GTV +YA++L +LLRLRQ C H L+ S G SG
Sbjct: 675 IYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNAGSSS-GP-SGN 732
Query: 662 ----EMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD 717
E+ K+L R M + L S S C +C D V+T C HVFC C + I +
Sbjct: 733 DTPEELRKKLIRKMKLILSSG---SDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNE 789
Query: 718 DNMCPAPRCKEQLGAD 733
P C+ + D
Sbjct: 790 QPHAKCPLCRNDIHGD 805
Score = 139 (54.0 bits), Expect = 3.5e-61, Sum P(5) = 3.5e-61
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + + L+ +Y+G R +DP L+K D+VLTTY+I+T++
Sbjct: 476 TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRDPALLSKQDIVLTTYNILTHD 535
Score = 90 (36.7 bits), Expect = 5.3e-44, Sum P(5) = 5.3e-44
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG 555
DYG PL + W RV+LDE I+N Q +A L A+R + PI +NSL
Sbjct: 535 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPI-QNSL-- 591
Query: 556 YKKLQAVLRAIMLR 569
K L ++L + L+
Sbjct: 592 -KDLWSLLSFLKLK 604
Score = 77 (32.2 bits), Expect = 3.5e-61, Sum P(5) = 3.5e-61
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILADD GLGKT++ IA+I
Sbjct: 289 GGILADDMGLGKTLTAIAVI 308
Score = 68 (29.0 bits), Expect = 3.5e-61, Sum P(5) = 3.5e-61
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + K P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRE 255
Score = 46 (21.3 bits), Expect = 1.8e-15, Sum P(5) = 1.8e-15
Identities = 18/92 (19%), Positives = 35/92 (38%)
Query: 576 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-M 634
I G ++ PP+ ++ S EW K+ + A D N N ++++
Sbjct: 802 IHGDNLLECPPEELACDTEKKSNTEWTSSSKINA----LMHALIDLRKKNPNIKSLVVSQ 857
Query: 635 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 666
+ PL + F ++ G MA++
Sbjct: 858 FTTFLSLIETPLRASGFVFT---RLDGSMAQK 886
Score = 43 (20.2 bits), Expect = 3.2e-39, Sum P(5) = 3.2e-39
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 534 CCSLRAKRSTIKIPISRNSLHGYKKLQ 560
C ++ ++ K P+ RN +HG L+
Sbjct: 783 CQVIQNEQPHAKCPLCRNDIHGDNLLE 809
>UNIPROTKB|Q14527 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0016874
EMBL:CH471052 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 GO:GO:0016887 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:L34673
EMBL:Z46606 EMBL:AJ418064 EMBL:BC044659 EMBL:S64671 IPI:IPI00339381
IPI:IPI00759790 PIR:S49618 RefSeq:NP_003062.2 RefSeq:NP_620636.1
UniGene:Hs.3068 PDB:2L1I PDBsum:2L1I ProteinModelPortal:Q14527
SMR:Q14527 DIP:DIP-29828N IntAct:Q14527 MINT:MINT-1639589
STRING:Q14527 PhosphoSite:Q14527 DMDM:60390864 PaxDb:Q14527
PRIDE:Q14527 DNASU:6596 Ensembl:ENST00000310053
Ensembl:ENST00000392912 Ensembl:ENST00000465259
Ensembl:ENST00000494055 GeneID:6596 KEGG:hsa:6596 UCSC:uc003ewq.1
CTD:6596 GeneCards:GC03M148747 H-InvDB:HIX0024319 HGNC:HGNC:11099
HPA:HPA015284 MIM:603257 neXtProt:NX_Q14527 PharmGKB:PA35949
HOVERGEN:HBG079192 InParanoid:Q14527 KO:K15711 OMA:SNWIDQF
PhylomeDB:Q14527 GenomeRNAi:6596 NextBio:25655 ArrayExpress:Q14527
Bgee:Q14527 CleanEx:HS_HLTF Genevestigator:Q14527
GermOnline:ENSG00000071794 Uniprot:Q14527
Length = 1009
Score = 309 (113.8 bits), Expect = 2.6e-60, Sum P(5) = 2.6e-60
Identities = 63/135 (46%), Positives = 91/135 (67%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDR-EITVMLMS 875
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+ T+ML+S
Sbjct: 852 IKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLS 911
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
LKAG +GLN+ AAS V L+D WNP EDQ DR HR+GQ + V +T+ ++D+VE+ +L
Sbjct: 912 LKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENML 971
Query: 936 KLQDDKRKMVASAFG 950
K+Q+ KR++ A AFG
Sbjct: 972 KIQNKKRELAAGAFG 986
Score = 257 (95.5 bits), Expect = 2.6e-60, Sum P(5) = 2.6e-60
Identities = 63/196 (32%), Positives = 101/196 (51%)
Query: 543 TIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWA 602
TI+ P++ G ++LQ++++ I LRRTK + I G+P++ LP + + + + S EE
Sbjct: 617 TIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERK 676
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISG- 661
Y+ ++++ + + GTV +YA++L +LLRLRQ C H L+ S G SG
Sbjct: 677 IYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNA-VSSNGP-SGN 734
Query: 662 ----EMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD 717
E+ K+L R M + L S S C +C D V+T C HVFC C + I +
Sbjct: 735 DTPEELRKKLIRKMKLILSSG---SDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNE 791
Query: 718 DNMCPAPRCKEQLGAD 733
P C+ + D
Sbjct: 792 QPHAKCPLCRNDIHED 807
Score = 135 (52.6 bits), Expect = 2.6e-60, Sum P(5) = 2.6e-60
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + + L+ +Y+G R ++P L+K D+VLTTY+I+T++
Sbjct: 478 TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHD 537
Score = 87 (35.7 bits), Expect = 8.1e-43, Sum P(5) = 8.1e-43
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG 555
DYG PL + W RV+LDE I+N Q +A L ++R + PI +NSL
Sbjct: 537 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPI-QNSL-- 593
Query: 556 YKKLQAVLRAIMLR 569
K L ++L + L+
Sbjct: 594 -KDLWSLLSFLKLK 606
Score = 77 (32.2 bits), Expect = 2.6e-60, Sum P(5) = 2.6e-60
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILADD GLGKT++ IA+I
Sbjct: 289 GGILADDMGLGKTLTAIAVI 308
Score = 68 (29.0 bits), Expect = 2.6e-60, Sum P(5) = 2.6e-60
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + K P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRE 255
Score = 41 (19.5 bits), Expect = 1.3e-50, Sum P(5) = 1.3e-50
Identities = 14/71 (19%), Positives = 36/71 (50%)
Query: 412 ALSVLI--YHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLS 469
A++V++ +H G P+E K +++ Y++ + + + E+AD + + S
Sbjct: 304 AIAVILTNFHDGRPL--PIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRCS 361
Query: 470 SEFSVNKKRKK 480
+ S++ ++K
Sbjct: 362 EQPSISDIKEK 372
>GENEDB_PFALCIPARUM|PFL2440w [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16,
putative" species:5833 "Plasmodium falciparum" [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 335 (123.0 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 66/152 (43%), Positives = 101/152 (66%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ+ MLDL+E L +H I +L G MS+ +R+ + +FN D+++ V+L+SLKA
Sbjct: 1496 KCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQLRVLLISLKA 1555
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G GLN+ A+ + ++D WWNP E QA+ RAHRIGQT+ V R I +TVE++I++LQ
Sbjct: 1556 GGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKIIQLQ 1615
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ K+ + S G+ G +L+ EDL +LF
Sbjct: 1616 NKKQLVFDSTIGDS--GNAMQKLSKEDLAFLF 1645
Score = 198 (74.8 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 56/165 (33%), Positives = 85/165 (51%)
Query: 553 LHGYKKLQ-AVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 611
L G L+ VL I+LRRTKG + + INL P I + K SKEE FY+ L +
Sbjct: 1150 LSGMSYLKNEVLDKILLRRTKG---ERKSDINLKPLIIKIRKDKLSKEEKDFYESLYKQT 1206
Query: 612 LKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDM 671
+F + ++ TV NYA+I +L RLRQA DHP L+ + + SG+ K+
Sbjct: 1207 STQFNTYVNSNTVLHNYAHIFDLLSRLRQAADHPYLII-FGNSFLSDPSGKFIKK--NTT 1263
Query: 672 LIDLLSRLETSSAICCVCSDPPE--DSVVTMCGHVFCYQCASEYI 714
+I +S + +C +C + + +++ T C H F C +YI
Sbjct: 1264 IIPAIS----NDYVCGICLENVQKRNNISTKCNHNFHKSCLKQYI 1304
Score = 141 (54.7 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++ P + + QW E+E K D+ L+V +YHG S+ EL KYD+V+T+Y++V E
Sbjct: 443 TLIIAPVAAVMQWKSEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVV--E 499
Query: 447 VPKQPSVDEEEAD-EKNGETYGLSSEFSVNKK 477
V + V++ + E G Y L + ++KK
Sbjct: 500 VNFRKIVNKHKQPCEYCGRLY-LPNNLDIHKK 530
Score = 109 (43.4 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321
L +LL++QK + WM+ +E ++ GGILAD+ G+GKTI I LI Q+
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNVK--GGILADEMGMGKTIQAITLILCQK 270
Score = 67 (28.6 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLR 538
L ++ W R++LDEA IKN T ++ +L+
Sbjct: 1030 LHQIYWNRIILDEAHRIKNRNTSTTQSILNLK 1061
Score = 44 (20.5 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 832 LVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 863
L + S + ++++ DG ++L + D VKD+
Sbjct: 1390 LEKKSKSISVVKFKNKDGYINLLSNDENVKDY 1421
Score = 40 (19.1 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 591 LTKVDFSKEEWAFYKKLESDSLKKFK 616
+T D K + + KK +S S+ KFK
Sbjct: 1378 ITSKDLLKNKKSLEKKSKSISVVKFK 1403
>UNIPROTKB|Q8I4S6 [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006289
"nucleotide-excision repair" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 335 (123.0 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 66/152 (43%), Positives = 101/152 (66%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ+ MLDL+E L +H I +L G MS+ +R+ + +FN D+++ V+L+SLKA
Sbjct: 1496 KCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQLRVLLISLKA 1555
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G GLN+ A+ + ++D WWNP E QA+ RAHRIGQT+ V R I +TVE++I++LQ
Sbjct: 1556 GGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKIIQLQ 1615
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ K+ + S G+ G +L+ EDL +LF
Sbjct: 1616 NKKQLVFDSTIGDS--GNAMQKLSKEDLAFLF 1645
Score = 198 (74.8 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 56/165 (33%), Positives = 85/165 (51%)
Query: 553 LHGYKKLQ-AVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 611
L G L+ VL I+LRRTKG + + INL P I + K SKEE FY+ L +
Sbjct: 1150 LSGMSYLKNEVLDKILLRRTKG---ERKSDINLKPLIIKIRKDKLSKEEKDFYESLYKQT 1206
Query: 612 LKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDM 671
+F + ++ TV NYA+I +L RLRQA DHP L+ + + SG+ K+
Sbjct: 1207 STQFNTYVNSNTVLHNYAHIFDLLSRLRQAADHPYLII-FGNSFLSDPSGKFIKK--NTT 1263
Query: 672 LIDLLSRLETSSAICCVCSDPPE--DSVVTMCGHVFCYQCASEYI 714
+I +S + +C +C + + +++ T C H F C +YI
Sbjct: 1264 IIPAIS----NDYVCGICLENVQKRNNISTKCNHNFHKSCLKQYI 1304
Score = 141 (54.7 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++ P + + QW E+E K D+ L+V +YHG S+ EL KYD+V+T+Y++V E
Sbjct: 443 TLIIAPVAAVMQWKSEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVV--E 499
Query: 447 VPKQPSVDEEEAD-EKNGETYGLSSEFSVNKK 477
V + V++ + E G Y L + ++KK
Sbjct: 500 VNFRKIVNKHKQPCEYCGRLY-LPNNLDIHKK 530
Score = 109 (43.4 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321
L +LL++QK + WM+ +E ++ GGILAD+ G+GKTI I LI Q+
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNVK--GGILADEMGMGKTIQAITLILCQK 270
Score = 67 (28.6 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLR 538
L ++ W R++LDEA IKN T ++ +L+
Sbjct: 1030 LHQIYWNRIILDEAHRIKNRNTSTTQSILNLK 1061
Score = 44 (20.5 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 832 LVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 863
L + S + ++++ DG ++L + D VKD+
Sbjct: 1390 LEKKSKSISVVKFKNKDGYINLLSNDENVKDY 1421
Score = 40 (19.1 bits), Expect = 3.8e-43, Sum P(5) = 3.8e-43
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 591 LTKVDFSKEEWAFYKKLESDSLKKFK 616
+T D K + + KK +S S+ KFK
Sbjct: 1378 ITSKDLLKNKKSLEKKSKSISVVKFK 1403
>RGD|1309031 [details] [associations]
symbol:Hltf "helicase-like transcription factor" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 RGD:1309031 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00372747
Ensembl:ENSRNOT00000000095 UCSC:RGD:1309031 ArrayExpress:F1LT77
Uniprot:F1LT77
Length = 1004
Score = 315 (115.9 bits), Expect = 7.7e-59, Sum P(5) = 7.7e-59
Identities = 64/135 (47%), Positives = 91/135 (67%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDR-EITVMLMS 875
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NTD T+ML+S
Sbjct: 847 IKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTDAGSPTIMLLS 906
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
LKAG +GLN+ AAS V L+D WNP EDQ DR HR+GQ + V +T+ ++D+VE+ +L
Sbjct: 907 LKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENML 966
Query: 936 KLQDDKRKMVASAFG 950
K+Q+ KR++ A AFG
Sbjct: 967 KIQNMKRELAAGAFG 981
Score = 238 (88.8 bits), Expect = 7.7e-59, Sum P(5) = 7.7e-59
Identities = 60/208 (28%), Positives = 105/208 (50%)
Query: 544 IKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 603
I+ P++ G ++LQ+++++I LRRTK + I G+P++ LP + + + + S EE
Sbjct: 613 IQRPVTTGDEGGLRRLQSLIKSITLRRTKTSKIKGKPVLELPERKVFIQHITLSVEERKI 672
Query: 604 YKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEM 663
Y+ ++++ + GTV +YA++L +LLRLRQ C H L S S +
Sbjct: 673 YQSVKNEGKATIARYFTEGTVLAHYADVLGLLLRLRQICCHVHLPTNGTSSSDPSRS-DT 731
Query: 664 AKRLPRDMLIDLLSRLETSSAI--CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMC 721
+ L R ML+ + + +S + C +C D V+T C HVFC C + I +
Sbjct: 732 PEEL-RKMLVTKMKLILSSGSDEECSICLDSLTFPVITHCAHVFCKPCICQVIQREQPHA 790
Query: 722 PAPRCKEQL-GADVVFSKTTLKNCVSDD 748
P C+ + G +++ C SD+
Sbjct: 791 KCPLCRSNIHGHNLLECPPEELACDSDN 818
Score = 136 (52.9 bits), Expect = 7.7e-59, Sum P(5) = 7.7e-59
Identities = 22/60 (36%), Positives = 40/60 (66%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W ++ + + L++ +Y+G R +D L+K D++LTTY+I+T++
Sbjct: 473 TLIICPLSVLSNWIDQIGQHIKSEVDLNLYVYYGPDRIRDSTWLSKQDIILTTYNILTHD 532
Score = 90 (36.7 bits), Expect = 1.3e-43, Sum P(5) = 1.3e-43
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG 555
DYG PL + W RV+LDE I+N Q +A L A+R + PI +NSL
Sbjct: 532 DYGTKDNSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPI-QNSL-- 588
Query: 556 YKKLQAVLRAIMLR 569
K L ++L + L+
Sbjct: 589 -KDLWSLLSFLKLK 601
Score = 78 (32.5 bits), Expect = 7.7e-59, Sum P(5) = 7.7e-59
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALI 317
+++ ++H GGILADD GLGKT++ IA+I
Sbjct: 279 VKERPENVH--GGILADDMGLGKTLTAIAVI 307
Score = 64 (27.6 bits), Expect = 7.7e-59, Sum P(5) = 7.7e-59
Identities = 24/94 (25%), Positives = 39/94 (41%)
Query: 199 DIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAY-RSGSADERAVGGDERLIYQAALEDL 257
D + G ++ P+ G S+ T G + +Y R + + + EDL
Sbjct: 161 DHLKKHGFKLGPTPKTVGSSLENTWGSGRAGPSYSRPVHVAVQMTTEQLKTEFDKLFEDL 220
Query: 258 NQPKVEATL-PDGLLSVNLLKHQKIALAWMLQKE 290
+ + P + LL HQK ALAWM+ +E
Sbjct: 221 KEDDRTIEMEPAEAVETPLLPHQKQALAWMIARE 254
Score = 51 (23.0 bits), Expect = 2.4e-15, Sum P(5) = 2.4e-15
Identities = 31/176 (17%), Positives = 67/176 (38%)
Query: 576 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-M 634
I G ++ PP+ ++ + S EW K+ + A + T + N ++++
Sbjct: 799 IHGHNLLECPPEELACDSDNKSDMEWTSSSKINA----LMNALIELRTKDPNIKSLVVSQ 854
Query: 635 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPE 694
+ PL + F ++ G MA++ R I + S + S
Sbjct: 855 FTTFLSLIETPLKASGFVFT---RLDGSMAQK-KRVESIQCFQNTDAGSPTIMLLSLKAG 910
Query: 695 DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA--DVVFSKTTLKNCVSDD 748
+ +C + + ++ C RC +LG +V+ +K +K+ V ++
Sbjct: 911 GVGLNLCAASRVFLMDPAWNPAAEDQC-FDRC-HRLGQKQEVIITKFIVKDSVEEN 964
Score = 45 (20.9 bits), Expect = 4.8e-39, Sum P(5) = 4.8e-39
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 534 CCSLRAKRSTIKIPISRNSLHGYKKLQ 560
C ++ ++ K P+ R+++HG+ L+
Sbjct: 780 CQVIQREQPHAKCPLCRSNIHGHNLLE 806
>UNIPROTKB|E1C366 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:AADN02032807 IPI:IPI00602086
Ensembl:ENSGALT00000024603 Uniprot:E1C366
Length = 1150
Score = 299 (110.3 bits), Expect = 4.4e-56, Sum P(6) = 4.4e-56
Identities = 64/153 (41%), Positives = 94/153 (61%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
KS+V SQWT ML +V L + ++Y LDG+++ R V++FN + + VML+SL
Sbjct: 999 KSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGSVNPKQRMDVVEEFNNNPKGPQVMLVSLL 1058
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG +GLN+ +H+ LLD+ WNP EDQA DR +R+GQ + V + R TVE++IL+L
Sbjct: 1059 AGGVGLNLTGGNHLFLLDMHWNPALEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQL 1118
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
Q K+ + G G S+LT+ DL+ LF
Sbjct: 1119 QTRKKGLAQQVLA---GKGETSKLTLADLKTLF 1148
Score = 168 (64.2 bits), Expect = 4.4e-56, Sum P(6) = 4.4e-56
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
P+ TL++CPAS++ W +E++ +V L V +YHG +R K L++YD+V+TTYS+
Sbjct: 623 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 681
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFS 473
++ EVP S +E E K+ E SS S
Sbjct: 682 LSKEVPT--SKEEGEFPAKDHEVGSGSSACS 710
Score = 149 (57.5 bits), Expect = 4.4e-56, Sum P(6) = 4.4e-56
Identities = 41/86 (47%), Positives = 55/86 (63%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
+LE + A P GL V LL HQ+ ALAW+L +E++ C GGILADD GLGKT++
Sbjct: 534 SLESCPTEQAVAEDPSGL-KVPLLLHQRQALAWLLWRESQR-PC-GGILADDMGLGKTLT 590
Query: 313 IIALIQMQRSLQSKSKTEVLGNQKTE 338
+IALI Q+ + KTE G++K E
Sbjct: 591 MIALILTQKQM----KTEK-GSKKLE 611
Score = 123 (48.4 bits), Expect = 4.4e-56, Sum P(6) = 4.4e-56
Identities = 27/59 (45%), Positives = 33/59 (55%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQ 560
C PL +V W RV+LDEA TIKN + Q + A C LRA + PI N L Y L+
Sbjct: 709 CSPLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLR 767
Score = 97 (39.2 bits), Expect = 7.3e-50, Sum P(5) = 7.3e-50
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 535 CSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTK 593
CS + K + N+ G +L + R+++LRRTK G+P+++LP +++ L +
Sbjct: 771 CSPFDEYKVWKYQVDNNTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQRSMQLHQ 830
Query: 594 VDFSKEEWAFYKKLESDSLKKFKAF 618
+ S EE + Y L + S +++
Sbjct: 831 LKLSAEEQSVYNVLFARSRSTLQSY 855
Score = 75 (31.5 bits), Expect = 4.4e-56, Sum P(6) = 4.4e-56
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 604 YKKLESD---SLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS 660
++K+ D S K+F A + + + A++L MLLRLRQ C H L+K D +
Sbjct: 874 FEKVAQDFGCSQKEFLASSQSAVQVSSTAHVLSMLLRLRQCCCHLSLLK-VALDQANLAN 932
Query: 661 GEMAKRLPRDMLIDLLSRLET 681
++ + + LS L+T
Sbjct: 933 EGLSLSIEEQLSALTLSELQT 953
Score = 43 (20.2 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 763 GILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIV 822
GIL ++ K T++ ++ TQ ++ T+ ++ N S+ + S S + S++
Sbjct: 577 GILADDMGLGKTLTMIALILTQKQMKTEKGSKKLEVWLSRNDSTVIPSCSTLIICPASLI 636
Query: 823 FSQWTRMLD 831
W + +D
Sbjct: 637 H-HWKKEID 644
Score = 38 (18.4 bits), Expect = 4.9e-45, Sum P(5) = 4.9e-45
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 289 KETRSLHCLGG 299
+ETR C+GG
Sbjct: 284 RETREKECIGG 294
Score = 37 (18.1 bits), Expect = 4.4e-56, Sum P(6) = 4.4e-56
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 108 KNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSL 150
KN G +T + + + I + T+P H+L
Sbjct: 279 KNCGDRETREKECIGGKNGEMKPIPKENTTSTTVPQAASQHAL 321
Score = 37 (18.1 bits), Expect = 2.5e-47, Sum P(6) = 2.5e-47
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 524 KNHRTQVARACCSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIIN 583
K+H + CS + + ++ + K+Q + LR + + G PI N
Sbjct: 698 KDHEVGSGSSACSPLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQN 757
>UNIPROTKB|E1C1L9 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271 Pfam:PF06839
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AADN02032807
IPI:IPI00821328 Ensembl:ENSGALT00000036922 Uniprot:E1C1L9
Length = 1167
Score = 299 (110.3 bits), Expect = 5.0e-56, Sum P(6) = 5.0e-56
Identities = 64/153 (41%), Positives = 94/153 (61%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
KS+V SQWT ML +V L + ++Y LDG+++ R V++FN + + VML+SL
Sbjct: 1016 KSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGSVNPKQRMDVVEEFNNNPKGPQVMLVSLL 1075
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG +GLN+ +H+ LLD+ WNP EDQA DR +R+GQ + V + R TVE++IL+L
Sbjct: 1076 AGGVGLNLTGGNHLFLLDMHWNPALEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQL 1135
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
Q K+ + G G S+LT+ DL+ LF
Sbjct: 1136 QTRKKGLAQQVLA---GKGETSKLTLADLKTLF 1165
Score = 168 (64.2 bits), Expect = 5.0e-56, Sum P(6) = 5.0e-56
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
P+ TL++CPAS++ W +E++ +V L V +YHG +R K L++YD+V+TTYS+
Sbjct: 640 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 698
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFS 473
++ EVP S +E E K+ E SS S
Sbjct: 699 LSKEVPT--SKEEGEFPAKDHEVGSGSSACS 727
Score = 149 (57.5 bits), Expect = 5.0e-56, Sum P(6) = 5.0e-56
Identities = 41/86 (47%), Positives = 55/86 (63%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
+LE + A P GL V LL HQ+ ALAW+L +E++ C GGILADD GLGKT++
Sbjct: 551 SLESCPTEQAVAEDPSGL-KVPLLLHQRQALAWLLWRESQR-PC-GGILADDMGLGKTLT 607
Query: 313 IIALIQMQRSLQSKSKTEVLGNQKTE 338
+IALI Q+ + KTE G++K E
Sbjct: 608 MIALILTQKQM----KTEK-GSKKLE 628
Score = 123 (48.4 bits), Expect = 5.0e-56, Sum P(6) = 5.0e-56
Identities = 27/59 (45%), Positives = 33/59 (55%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQ 560
C PL +V W RV+LDEA TIKN + Q + A C LRA + PI N L Y L+
Sbjct: 726 CSPLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLR 784
Score = 97 (39.2 bits), Expect = 8.2e-50, Sum P(5) = 8.2e-50
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 535 CSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTK 593
CS + K + N+ G +L + R+++LRRTK G+P+++LP +++ L +
Sbjct: 788 CSPFDEYKVWKYQVDNNTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQRSMQLHQ 847
Query: 594 VDFSKEEWAFYKKLESDSLKKFKAF 618
+ S EE + Y L + S +++
Sbjct: 848 LKLSAEEQSVYNVLFARSRSTLQSY 872
Score = 75 (31.5 bits), Expect = 5.0e-56, Sum P(6) = 5.0e-56
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 604 YKKLESD---SLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS 660
++K+ D S K+F A + + + A++L MLLRLRQ C H L+K D +
Sbjct: 891 FEKVAQDFGCSQKEFLASSQSAVQVSSTAHVLSMLLRLRQCCCHLSLLK-VALDQANLAN 949
Query: 661 GEMAKRLPRDMLIDLLSRLET 681
++ + + LS L+T
Sbjct: 950 EGLSLSIEEQLSALTLSELQT 970
Score = 43 (20.2 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 763 GILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIV 822
GIL ++ K T++ ++ TQ ++ T+ ++ N S+ + S S + S++
Sbjct: 594 GILADDMGLGKTLTMIALILTQKQMKTEKGSKKLEVWLSRNDSTVIPSCSTLIICPASLI 653
Query: 823 FSQWTRMLD 831
W + +D
Sbjct: 654 H-HWKKEID 661
Score = 38 (18.4 bits), Expect = 5.4e-45, Sum P(5) = 5.4e-45
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 289 KETRSLHCLGG 299
+ETR C+GG
Sbjct: 284 RETREKECIGG 294
Score = 37 (18.1 bits), Expect = 5.0e-56, Sum P(6) = 5.0e-56
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 108 KNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSL 150
KN G +T + + + I + T+P H+L
Sbjct: 279 KNCGDRETREKECIGGKNGEMKPIPKENTTSTTVPQAASQHAL 321
Score = 37 (18.1 bits), Expect = 2.8e-47, Sum P(6) = 2.8e-47
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 524 KNHRTQVARACCSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIIN 583
K+H + CS + + ++ + K+Q + LR + + G PI N
Sbjct: 715 KDHEVGSGSSACSPLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQN 774
>POMBASE|SPAC13G6.01c [details] [associations]
symbol:rad8 "ubiquitin-protein ligase E3 Rad8"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IGI;IMP] [GO:0006289 "nucleotide-excision
repair" evidence=IMP] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=NAS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 PomBase:SPAC13G6.01c Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0006301 GO:GO:0009650 KO:K15505
HOGENOM:HOG000040492 OrthoDB:EOG4J40R2 EMBL:X74615 PIR:S41478
RefSeq:XP_001713034.1 ProteinModelPortal:P36607 STRING:P36607
PRIDE:P36607 EnsemblFungi:SPAC13G6.01c.1 GeneID:3361391
KEGG:spo:SPAC13G6.01c OMA:PCAHRMC NextBio:20811441 Uniprot:P36607
Length = 1133
Score = 347 (127.2 bits), Expect = 1.1e-55, Sum P(7) = 1.1e-55
Identities = 64/154 (41%), Positives = 101/154 (65%)
Query: 817 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL 876
P K ++FSQ+T LD++ + L + Y R DGTMS R A++ F D ++ V+++SL
Sbjct: 981 PEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVNVLIISL 1040
Query: 877 KAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936
KAG +GLN+ A+HV ++D WW+ + E QA+DR HR+GQ +PV VTR +RDTVE+R+LK
Sbjct: 1041 KAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLK 1100
Query: 937 LQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+Q+ ++ + G +G ++ED++ LF
Sbjct: 1101 IQE-RKNFITGTLGMSEGKQQVQ--SIEDIKMLF 1131
Score = 196 (74.1 bits), Expect = 1.1e-55, Sum P(7) = 1.1e-55
Identities = 58/177 (32%), Positives = 90/177 (50%)
Query: 535 CSLRAKRSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLT 592
C+ ++ + +P S++ L +Q++L ++LRRTK T +G I+ LPPKT+ +
Sbjct: 708 CNYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTVKIE 767
Query: 593 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY- 651
+DFS E Y L + + A AGT+ +NY IL +LLRLRQAC P+L+
Sbjct: 768 YLDFSDSERKIYDSLYTKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLSNMT 827
Query: 652 -------DFD-SVGKISGEM------AKRLPRDML-IDLLSRLETSSAICCVCSDPP 693
DF+ SV + + + K +P D+L ID L E C +C + P
Sbjct: 828 INSETFDDFEFSVEQFNSLINQFVVTGKPIPSDILKIDTLKSFEALITECPICCNEP 884
Score = 87 (35.7 bits), Expect = 1.2e-44, Sum P(7) = 1.2e-44
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 665 KRLPRDML-IDLLSRLETSSAICCVC-SDPPEDSVVTMCGHVFCYQCASEYITGDD--NM 720
K +P D+L ID L E C +C ++P ++ ++ C H C C SE+I N+
Sbjct: 855 KPIPSDILKIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNI 914
Query: 721 CP--APRCKEQLGADVVFSKTTLKN 743
P C++ V+ +KN
Sbjct: 915 IPPLCHTCRQPFNEQDVYKPFFVKN 939
Score = 86 (35.3 bits), Expect = 1.1e-55, Sum P(7) = 1.1e-55
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK 540
L V WFRVVLDE I+N ++ A+AC S+ ++
Sbjct: 645 LFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQ 678
Score = 78 (32.5 bits), Expect = 1.1e-55, Sum P(7) = 1.1e-55
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQK 336
GGILAD+ GLGKTI +++LI + + E + K
Sbjct: 524 GGILADEMGLGKTIEVLSLIHSRPCFSTDEIPEAFRHSK 562
Score = 72 (30.4 bits), Expect = 1.1e-55, Sum P(7) = 1.1e-55
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD------VVLTTY 440
TLVV P S+L QW E KV +IY+G + D ++ D +++T+Y
Sbjct: 572 TLVVAPMSLLDQWHSEA-CKVSQGTKFRSMIYYGSEKPLD-LKSCVIDTSTAPLIIITSY 629
Query: 441 SIVTNEVPKQ 450
++ +E +Q
Sbjct: 630 GVLLSEFSQQ 639
Score = 55 (24.4 bits), Expect = 1.1e-55, Sum P(7) = 1.1e-55
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 228 SDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWML 287
SDL S + DE V D+ I ++ A P +++L ++QK AL WM
Sbjct: 400 SDLT-PSSTEDEEDVVSDQLAILYDKVKTSGAELPSAPKPS-TFALDLREYQKQALYWMC 457
Query: 288 QKE 290
KE
Sbjct: 458 CKE 460
Score = 44 (20.5 bits), Expect = 1.1e-55, Sum P(7) = 1.1e-55
Identities = 15/76 (19%), Positives = 34/76 (44%)
Query: 87 FSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQ 146
F + + N D + ++ Q+ ++ ++ V + ++++AL P
Sbjct: 107 FDESFNIKNSNPDSESQKDTDASLTQMDQLSNTVS-VKDLSINRNTNKKALNAVSP---- 161
Query: 147 PHSLNTKSKSSVENMN 162
SLN S SSV++++
Sbjct: 162 --SLNLSSNSSVQDVS 175
Score = 41 (19.5 bits), Expect = 1.3e-27, Sum P(4) = 1.3e-27
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 753 PTDSPFADKSGILDNEYISSKIRTVLDILHTQ 784
P P+ + GIL +E K VL ++H++
Sbjct: 516 PNSMPY-HRGGILADEMGLGKTIEVLSLIHSR 546
Score = 37 (18.1 bits), Expect = 1.4e-39, Sum P(7) = 1.4e-39
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 607 LESDSLKKFKAFADAGTV--NQNYANILLMLLRLRQAC 642
L+ D+LK F+A + N+ N LL L + AC
Sbjct: 862 LKIDTLKSFEALITECPICCNEPIQNPLL--LNCKHAC 897
>UNIPROTKB|Q9UNY4 [details] [associations]
symbol:TTF2 "Transcription termination factor 2"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=TAS] [GO:0008023
"transcription elongation factor complex" evidence=TAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=TAS] [GO:0006353
"DNA-dependent transcription, termination" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0008270 GO:GO:0006397 GO:GO:0005681
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0008094 GO:GO:0008023 GO:GO:0006369
CleanEx:HS_TTF2 EMBL:AL445231 EMBL:AL391476 KO:K15173 EMBL:AF073771
EMBL:AF080255 EMBL:AK291017 EMBL:BC030058 IPI:IPI00290812
IPI:IPI00640904 RefSeq:NP_003585.3 UniGene:Hs.486818
ProteinModelPortal:Q9UNY4 SMR:Q9UNY4 IntAct:Q9UNY4 MINT:MINT-272557
STRING:Q9UNY4 PhosphoSite:Q9UNY4 DMDM:73920148 PaxDb:Q9UNY4
PRIDE:Q9UNY4 Ensembl:ENST00000369466 Ensembl:ENST00000427271
GeneID:8458 KEGG:hsa:8458 UCSC:uc001egx.1 UCSC:uc001egy.3 CTD:8458
GeneCards:GC01P117602 H-InvDB:HIX0000933 HGNC:HGNC:12398
HPA:HPA005776 MIM:604718 neXtProt:NX_Q9UNY4 PharmGKB:PA37063
HOGENOM:HOG000154708 HOVERGEN:HBG053179 InParanoid:Q9UNY4
OMA:WCGSIPW OrthoDB:EOG4GMTWH PhylomeDB:Q9UNY4 ChiTaRS:TTF2
GenomeRNAi:8458 NextBio:31654 Bgee:Q9UNY4 Genevestigator:Q9UNY4
GermOnline:ENSG00000116830 Uniprot:Q9UNY4
Length = 1162
Score = 313 (115.2 bits), Expect = 1.4e-55, Sum P(6) = 1.4e-55
Identities = 63/152 (41%), Positives = 94/152 (61%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
KS++ SQWT ML +V L +H + Y +DG+++ R V+ FN R VML+SL A
Sbjct: 1011 KSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLA 1070
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G +GLN+ +H+ LLD+ WNP+ EDQA DR +R+GQ + V + R TVE++IL+LQ
Sbjct: 1071 GGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQ 1130
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ K+ + G + ++LT+ DLR LF
Sbjct: 1131 EKKKDLAKQVLSGS--GESVTKLTLADLRVLF 1160
Score = 156 (60.0 bits), Expect = 1.4e-55, Sum P(6) = 1.4e-55
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTL++CPAS++ W E+E +V + L V +YHG +R L+ YD+V+TTYS+V
Sbjct: 643 GTLIICPASLIHHWKNEVEKRV-NSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAK 701
Query: 446 EVPKQPSVDEEEADEKNGETYGLSS 470
E+P E E N G S+
Sbjct: 702 EIPTNKQ--EAEIPGANLNVEGTST 724
Score = 155 (59.6 bits), Expect = 1.4e-55, Sum P(6) = 1.4e-55
Identities = 49/127 (38%), Positives = 67/127 (52%)
Query: 210 PSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQA------ALEDLNQPKVE 263
P + KS GG S YR G ++ V ++ +A +LE V
Sbjct: 502 PVGSLELKSACQVTAGGSSQ-CYR-GHTNQDHVHAVWKITSEAIGQLHRSLESCPGETVV 559
Query: 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSL 323
A P GL V LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI Q++
Sbjct: 560 AEDPAGL-KVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTQKNQ 616
Query: 324 QSKSKTE 330
+ K + E
Sbjct: 617 EKKEEKE 623
Score = 105 (42.0 bits), Expect = 1.4e-55, Sum P(6) = 1.4e-55
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA--KRSTIKIPISRNSLHGYKKLQ 560
PL ++ W R++LDEA +KN R Q + A C L+A + + PI N L Y L+
Sbjct: 725 PLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLK 781
Score = 78 (32.5 bits), Expect = 1.4e-55, Sum P(6) = 1.4e-55
Identities = 30/141 (21%), Positives = 58/141 (41%)
Query: 548 ISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTKVDFSKEEWAFYKK 606
+ S G ++L + ++++LRRTK G+P++ LP + L + S++E Y
Sbjct: 798 VDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNV 857
Query: 607 LESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 666
+ S +++ N + ++ ++P +F S E A
Sbjct: 858 FFARSRSALQSYLKRHESRGNQSG---------RSPNNPFSRVALEFGSEEPRHSEAADS 908
Query: 667 LPRDMLIDLLSRLETSSAICC 687
PR + +LS+L CC
Sbjct: 909 -PRSSTVHILSQLLRLRQCCC 928
Score = 56 (24.8 bits), Expect = 2.4e-53, Sum P(6) = 2.4e-53
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 621 AGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGE-MAKRLPRDMLIDLLSRL 679
A + + +IL LLRLRQ C H L+K D + ++ GE + L + LS L
Sbjct: 906 ADSPRSSTVHILSQLLRLRQCCCHLSLLKSA-LDPM-ELKGEGLVLSLEEQLSALTLSEL 963
Query: 680 ETS 682
S
Sbjct: 964 RDS 966
Score = 50 (22.7 bits), Expect = 4.8e-45, Sum P(5) = 4.8e-45
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 207 RILPSSLMHGKSVSMTQFGGPSDLAYRSGSADE 239
++LP ++ S+S Q GGP + Y + A E
Sbjct: 260 QLLPQNVHSHNSISKPQKGGPLNKEYTNWEAKE 292
Score = 44 (20.5 bits), Expect = 2.1e-32, Sum P(5) = 2.1e-32
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 192 YVKKNDDDIMMYEGNRIL-PSSLMHGKSVSMTQFGGPSDLA---YRSGSADERA--VGGD 245
++ K+D G I+ P+SL+H + + + L Y + D RA +
Sbjct: 630 WLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTY 689
Query: 246 ERLI--YQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAW 285
+ +I Y +++ K EA +P L+V + +AW
Sbjct: 690 DIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAW 731
Score = 38 (18.4 bits), Expect = 1.4e-55, Sum P(6) = 1.4e-55
Identities = 14/59 (23%), Positives = 21/59 (35%)
Query: 129 EKISSQ-QALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKG 186
+K+ Q Q L+ L T KS+ + S T HL P + +G
Sbjct: 441 QKLIKQIQELEEVLSGLTLSPEQGTNEKSNSQVPQQSHFTKTTTGPPHLVPPQPLPRRG 499
>TAIR|locus:2196115 [details] [associations]
symbol:AT1G02670 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15083 IPI:IPI00540835
RefSeq:NP_171767.1 UniGene:At.51462 ProteinModelPortal:F4HXL1
SMR:F4HXL1 PRIDE:F4HXL1 EnsemblPlants:AT1G02670.1 GeneID:839532
KEGG:ath:AT1G02670 OMA:THITFAR Uniprot:F4HXL1
Length = 678
Score = 332 (121.9 bits), Expect = 3.2e-54, Sum P(5) = 3.2e-54
Identities = 67/152 (44%), Positives = 97/152 (63%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K+IVFSQ+T LDL+ +L + + +L G+MS A+D A+K+F + + V+LMSL+A
Sbjct: 527 KAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQA 586
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G + LN+ AASHV ++D WWNP E QA DR HRIGQ +PV V R + TVE++IL LQ
Sbjct: 587 GGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQ 646
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
K + S G+ + +L +D++ LF
Sbjct: 647 KKKEDLFESTLGDSEEA-VVQKLGEDDIKSLF 677
Score = 127 (49.8 bits), Expect = 3.2e-54, Sum P(5) = 3.2e-54
Identities = 32/73 (43%), Positives = 39/73 (53%)
Query: 384 AAG-TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
A G TLV+ P L QW E+ ++ + VL YHG R K+ +L YD VLTT I
Sbjct: 188 AVGHTLVLVPPVALSQWLDEIS-RLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVLTTSPI 246
Query: 443 VTNEVPKQPSVDE 455
V NE K VDE
Sbjct: 247 VENEYRKDEGVDE 259
Score = 117 (46.2 bits), Expect = 3.2e-54, Sum P(5) = 3.2e-54
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTE 330
L + LLK+QK LAW +E ++ GGILAD+ G+GKTI I+L+ +R + E
Sbjct: 130 LIIPLLKYQKEFLAWATIQELSAVR--GGILADEMGMGKTIQAISLVLARREVDRAKSRE 187
Query: 331 VLGN 334
+G+
Sbjct: 188 AVGH 191
Score = 110 (43.8 bits), Expect = 3.2e-54, Sum P(5) = 3.2e-54
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
FY+ L S F + AGT+ NYA+I +L+RLRQA DHP LV
Sbjct: 395 FYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLV 440
Score = 80 (33.2 bits), Expect = 3.2e-54, Sum P(5) = 3.2e-54
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 500 IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA 539
+D PL + W R+++DEA IKN ++ A+A +L A
Sbjct: 257 VDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEA 296
>ZFIN|ZDB-GENE-110411-73 [details] [associations]
symbol:si:ch1073-303l5.1 "si:ch1073-303l5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-110411-73 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545 EMBL:CABZ01070143
EMBL:CU693447 IPI:IPI00993890 Ensembl:ENSDART00000126063
ArrayExpress:E7FD29 Bgee:E7FD29 Uniprot:E7FD29
Length = 1149
Score = 290 (107.1 bits), Expect = 6.8e-54, Sum P(5) = 6.8e-54
Identities = 63/170 (37%), Positives = 104/170 (61%)
Query: 805 SSAVHSKSPIEGPIKS-IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 863
S +HS + KS ++ SQWT ML +V L + +++ +DGT++ R V++F
Sbjct: 985 SDFIHSDRNCQ---KSFVIVSQWTSMLKIVAVHLEKMGLKFAVIDGTVNPKRRMDLVEEF 1041
Query: 864 NTD-REITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922
NT+ + VML+SL AG +G+N++ +H+ L+D+ WNP EDQA DR +R+GQ++ VT+
Sbjct: 1042 NTNPKGPQVMLVSLCAGGVGINLIGGNHLFLIDMHWNPALEDQACDRIYRVGQSKDVTIH 1101
Query: 923 RLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972
R TVED+I LQ+ K+++ G + ++L++ DLR +F V
Sbjct: 1102 RFVCDGTVEDKISSLQEKKKELAQKVLSGT--GSSFTKLSLADLRVIFGV 1149
Score = 172 (65.6 bits), Expect = 6.8e-54, Sum P(5) = 6.8e-54
Identities = 32/86 (37%), Positives = 61/86 (70%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTL++CPAS++ W +E++ +V + L+V +YHG +R + LA++DVV+TTYS+V+
Sbjct: 626 GTLIICPASLVHHWKKEIDKRVKS-SRLTVYLYHGPNRQRSASVLAEHDVVITTYSLVSK 684
Query: 446 EVPKQPSVDEEEADEKNGETYGLSSE 471
E+P V +E+A++ + ++ ++S+
Sbjct: 685 EIP----VQKEDAEKPSKDSDHVASD 706
Score = 158 (60.7 bits), Expect = 6.8e-54, Sum P(5) = 6.8e-54
Identities = 73/260 (28%), Positives = 115/260 (44%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQT-VNPRIANVASADYEKISSQ-Q 135
Q+ + PGF ++ GQ++D L QL+T + + A ++ + + + +
Sbjct: 369 QKTITSYPGFQIASKVQ-GQSEDPRALHS-----QLKTQLKQKKATLSVVNVSALPDKGE 422
Query: 136 ALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKK 195
LKR + + +L + S ++ E+ + + A+ + P + G I +
Sbjct: 423 RLKRQVKDLEE--ALESLSLTATESQDKDRAEAEHKTAHSFSNPFSCPG-GTI----LLP 475
Query: 196 NDDDIMMYEGNRI-LPSSLMHGKSVSMTQFGG--PSDLAYRSGSADERAVGGDERLIYQA 252
M+ E + L +L G S FG P A+ G E + +A
Sbjct: 476 TAPAAMLKESSSASLGLNLSQGYS---QMFGAVNPQSQAFYGGRMTENRLLAVRNATTEA 532
Query: 253 ------ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQG 306
+LE EA P GL V LL HQK AL W+L +ET+ C GGILADD G
Sbjct: 533 IDHLHDSLESCPTENTEAHDPKGL-KVELLPHQKRALTWLLWRETQK-PC-GGILADDMG 589
Query: 307 LGKTISIIALIQMQRSLQSK 326
LGKT+++IALI Q+ K
Sbjct: 590 LGKTLTMIALILSQKKKDEK 609
Score = 114 (45.2 bits), Expect = 6.8e-54, Sum P(5) = 6.8e-54
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQ 560
PL +V W RV+LDEA +IKN + Q + A C LRA+ + PI N L Y L+
Sbjct: 709 PLLRVAWARVILDEAHSIKNPKVQTSMAVCKLRARSRWAVTGTPIQNNLLDMYSLLK 765
Score = 100 (40.3 bits), Expect = 1.9e-52, Sum P(5) = 1.9e-52
Identities = 26/91 (28%), Positives = 48/91 (52%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAF 603
K + S G ++L + RA++LRRTK G+P+++LP +T + ++ S++E A
Sbjct: 779 KAQVDNGSKRGGERLNILTRALLLRRTKDQLDATGKPLVSLPDRTCEIHRLKLSEDEQAV 838
Query: 604 YKKLESDS---LKKF-KAFADAGTVNQNYAN 630
Y + + S L+ + K D T + +N
Sbjct: 839 YDVVFAQSRSTLQNYLKRHEDGNTKKGDTSN 869
Score = 56 (24.8 bits), Expect = 6.8e-54, Sum P(5) = 6.8e-54
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 630 NILLMLLRLRQACDHPLLVKE 650
+IL +LLRLRQ C H L+K+
Sbjct: 900 HILSLLLRLRQCCCHLSLLKK 920
>WB|WBGene00010061 [details] [associations]
symbol:F54E12.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z73102 EMBL:Z82271
GeneTree:ENSGT00700000104545 KO:K15173 PIR:T18666
RefSeq:NP_502137.1 ProteinModelPortal:G5EEW5 SMR:G5EEW5
IntAct:G5EEW5 EnsemblMetazoa:F54E12.2.1 EnsemblMetazoa:F54E12.2.2
GeneID:178054 KEGG:cel:CELE_F54E12.2 CTD:178054 WormBase:F54E12.2
OMA:QTCAVTN NextBio:899526 Uniprot:G5EEW5
Length = 1091
Score = 273 (101.2 bits), Expect = 1.0e-53, Sum P(7) = 1.0e-53
Identities = 54/153 (35%), Positives = 89/153 (58%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE-ITVMLMSLK 877
K ++ SQWT +L+L+E + +Y + G + + R V FN ++ VML+SL
Sbjct: 935 KVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQERVDSFNREKGGARVMLLSLA 994
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG +GLN+ +H++++DL WNP E QA DR +R+GQ + V + RL + T+E R++ L
Sbjct: 995 AGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRLVTKGTIEQRVVML 1054
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
Q DK + +S + ++LT D++ LF
Sbjct: 1055 QKDKVALASSVL-DGNATRKMNKLTTADIKMLF 1086
Score = 158 (60.7 bits), Expect = 1.0e-53, Sum P(7) = 1.0e-53
Identities = 30/85 (35%), Positives = 55/85 (64%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PVELAKYDVVLTTY 440
P+ GTL+V PAS++ QW E++ ++ D + LS ++HG + +D LA+YDVV+TT+
Sbjct: 544 PSNGTLIVAPASLIHQWDAEIDRRLDD-SVLSTYMFHGTKKQRDIDARRLARYDVVITTF 602
Query: 441 SIVTNEVPKQPSVDEEEADEKNGET 465
+++ NE+ ++ + D +GE+
Sbjct: 603 NLIANELIEKIRTKSKADDSSDGES 627
Score = 131 (51.2 bits), Expect = 1.0e-53, Sum P(7) = 1.0e-53
Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 246 ERLIYQAALEDLNQP-KVEAT-LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
+R++ Q A P + E T P G + L+ HQK L WM +ET+ GGILAD
Sbjct: 441 DRVVRQLAEATHTIPDETELTDTPKGF-KLELMPHQKAGLTWMRWRETQPQP--GGILAD 497
Query: 304 DQGLGKTISIIALIQMQRSLQSKSKTEVLGN 334
D GLGKT+S+I+LI Q++ + + + GN
Sbjct: 498 DMGLGKTLSMISLIAHQKAARRARRED--GN 526
Score = 90 (36.7 bits), Expect = 1.0e-53, Sum P(7) = 1.0e-53
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA 539
LA++ W RV+LDEA TIKN ++ ++A C L A
Sbjct: 645 LAQICWSRVILDEAHTIKNRQSLASKAVCRLSA 677
Score = 84 (34.6 bits), Expect = 1.0e-53, Sum P(7) = 1.0e-53
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 621 AGTVNQNYANILLMLLRLRQACDHPLLVKE-YDFDSVGKISGEMAKRLPRDMLIDLLSR 678
AG+ + + +L++LLRLRQAC H + K D D+ I G+ A+ D L +LL +
Sbjct: 828 AGSNFEKMSCVLMLLLRLRQACVHFNITKTGVDMDAFSLIGGDNAEEANVDDLNELLEK 886
Score = 70 (29.7 bits), Expect = 1.0e-53, Sum P(7) = 1.0e-53
Identities = 15/60 (25%), Positives = 34/60 (56%)
Query: 558 KLQAVLRAIMLRRTKGTF--IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 615
++ + + ++LRRTK + Q ++ LPPK + + +++ +E Y+ + ++ KKF
Sbjct: 727 RVNLLTKNLLLRRTKDQTCAVTNQKLVQLPPKNVEVHELELDGDEAQAYE-IMMEAAKKF 785
Score = 61 (26.5 bits), Expect = 1.0e-53, Sum P(7) = 1.0e-53
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 743 NCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIV 794
N +G D P A + I D +Y+S KI+ L+I+ E K IV
Sbjct: 889 NMTLGNGDNEERDKPRAT-TRIFDPDYLSCKIKNTLEIVENIMEKKEKVVIV 939
Score = 39 (18.8 bits), Expect = 3.2e-32, Sum P(6) = 3.2e-32
Identities = 25/88 (28%), Positives = 34/88 (38%)
Query: 390 VCPASVLRQWAR--ELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447
+C +S RQ + ED V D++ SV P A + T S T+
Sbjct: 28 ICRSSPQRQSKESDDQEDSVVDESMKSV----NSPIVNTPSSTASH----CTNSFATS-T 78
Query: 448 PKQPSVDEEEADEKNGETYGLSSEFSVN 475
PK S A + G +YG S S N
Sbjct: 79 PKSKS----NASTRLGSSYGSSRSSSQN 102
Score = 37 (18.1 bits), Expect = 4.9e-33, Sum P(5) = 4.9e-33
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 448 PKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
PK V E E D + Y + E + K KK+
Sbjct: 757 PKNVEVHELELDGDEAQAYEIMME-AAKKFVKKL 789
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 329 (120.9 bits), Expect = 1.6e-53, Sum P(6) = 1.6e-53
Identities = 69/152 (45%), Positives = 95/152 (62%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
KSI+FSQ+T ML L+E L + I LDG+M+ R ++ F + ++ L+SLKA
Sbjct: 834 KSIIFSQFTGMLQLIEWRLRRAGITTVMLDGSMTPAQRAASIDHFMNNVDVECFLVSLKA 893
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G + LN+ AS V ++D WWNP E Q+ DR HRIGQTRPV +TRL I D++E RI++LQ
Sbjct: 894 GGVALNLTEASRVFIVDPWWNPAAEWQSADRVHRIGQTRPVVITRLCIEDSIESRIVELQ 953
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ K KM+ S D L EDL++LF
Sbjct: 954 EKKTKMINSTVNSDDVA--LDSLEPEDLQFLF 983
Score = 126 (49.4 bits), Expect = 1.6e-53, Sum P(6) = 1.6e-53
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 556 YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 615
++KL+ + IMLRR K +D + LP K I + + F + E + ++ +KF
Sbjct: 634 FRKLRLLTSKIMLRRQKKDHMDS---MELPLKEIIIDRQFFGEVEKDLAGSIMHNNQRKF 690
Query: 616 KAFADAGTVNQNYANILLMLLRLRQACDHP-LLVKE 650
+ G V NYANI +L ++RQ DHP L++K+
Sbjct: 691 DTYVAQGVVLNNYANIFGLLSQMRQVADHPDLILKK 726
Score = 114 (45.2 bits), Expect = 1.6e-53, Sum P(6) = 1.6e-53
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 685 ICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734
+CC+C D ED++ + C H FC CAS Y+ PRC L D+
Sbjct: 736 VCCICDDTAEDAIKSQCKHEFCRACASSYVNSTPQPT-CPRCHIVLSIDL 784
Score = 92 (37.4 bits), Expect = 1.6e-53, Sum P(6) = 1.6e-53
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-RTKD--PVELAKYDVVLTTYSIV 443
+LV+ P L QW E++ + L ++YHG + +TK EL YDV++ +Y+ +
Sbjct: 433 SLVLAPPVALMQWMSEIQSYT--EGTLKTIVYHGSNAKTKKMTKAELKGYDVIIMSYNSL 490
Query: 444 TNEVPKQPSVDEEEADEKNG 463
+ KQ E+ +K+G
Sbjct: 491 QSMYAKQ----EKGVSKKDG 506
Score = 86 (35.3 bits), Expect = 1.6e-53, Sum P(6) = 1.6e-53
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+S NL Q LAWM K GG+L D+ GLGKTI ++L+
Sbjct: 379 ISRNLKPFQLQGLAWM--KAMEQTEWKGGLLGDEMGLGKTIQAVSLV 423
Score = 69 (29.3 bits), Expect = 1.6e-53, Sum P(6) = 1.6e-53
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLR 538
L + + RV+LDEA IK+ T ++AC +L+
Sbjct: 514 LHSIDFHRVILDEAHYIKSRTTMTSKACLALK 545
>WB|WBGene00020742 [details] [associations]
symbol:T23H2.3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 KO:K15173 EMBL:FO081319
RefSeq:NP_001032980.2 ProteinModelPortal:P91494 PaxDb:P91494
EnsemblMetazoa:T23H2.3 GeneID:172347 KEGG:cel:CELE_T23H2.3
UCSC:T23H2.3 CTD:172347 WormBase:T23H2.3 HOGENOM:HOG000017261
InParanoid:P91494 OMA:GHNYTSI NextBio:875145 Uniprot:P91494
Length = 1001
Score = 285 (105.4 bits), Expect = 2.4e-52, Sum P(5) = 2.4e-52
Identities = 59/158 (37%), Positives = 92/158 (58%)
Query: 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE-ITVM 872
+E K ++ SQWT +L+LVE + Y + G + + R V FN ++ VM
Sbjct: 836 LEKKEKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQEKGGAQVM 895
Query: 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED 932
L+SL AG +GLN++ +H+I++DL WNP E QA DR +R+GQ + V + RL ++ T+E
Sbjct: 896 LLSLTAGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYRMGQKKEVFIHRLIVKGTIEQ 955
Query: 933 RILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
R++ LQ+ K + AS E ++LT D+R LF
Sbjct: 956 RVMDLQEKKLALAASVL-EGTATRKLNKLTTADIRMLF 992
Score = 164 (62.8 bits), Expect = 2.4e-52, Sum P(5) = 2.4e-52
Identities = 32/85 (37%), Positives = 58/85 (68%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTY 440
P+ GTL++ PAS++ QW E+ ++ + LSV ++HG + + +P ELA+YDVV+TTY
Sbjct: 445 PSNGTLIIAPASLIHQWEAEINRRL-ESDLLSVFMFHGTKKQRQIEPKELARYDVVITTY 503
Query: 441 SIVTNEVPKQP---SVDEEEADEKN 462
++ NE+ ++ S EE++D+++
Sbjct: 504 TLAANELMEKKAAGSKKEEDSDDES 528
Score = 141 (54.7 bits), Expect = 2.4e-52, Sum P(5) = 2.4e-52
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 246 ERLIYQAALEDLNQP-KVEAT-LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
+RL+ Q A P + + T PDGLL V L+ HQK L W++ +E + H GGILAD
Sbjct: 342 DRLMQQLADATHTIPAETDLTDTPDGLL-VELMPHQKAGLRWLVWREGQP-HS-GGILAD 398
Query: 304 DQGLGKTISIIALIQMQRSLQSKSK 328
D GLGKT+S+++LI Q++ + K
Sbjct: 399 DMGLGKTLSMLSLIVHQKAARRARK 423
Score = 97 (39.2 bits), Expect = 2.4e-52, Sum P(5) = 2.4e-52
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSL 537
PLA+V W RV+LDEA IKN +Q ++A C L
Sbjct: 544 PLARVAWSRVILDEAHAIKNRLSQCSKAVCRL 575
Score = 84 (34.6 bits), Expect = 2.4e-52, Sum P(5) = 2.4e-52
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 621 AGTVN-QNYANILLMLLRLRQACDHPLLVKE-YDFDSVGKISGEMAKRLPRDMLIDLLSR 678
AG N QN + ILL+L+RLRQAC H + K D D+ KI+G + L +L+ +
Sbjct: 726 AGNSNFQNMSCILLLLMRLRQACVHFHITKSGMDLDAF-KINGGDDEDADMKELENLMEK 784
Query: 679 LETSSAICCVCSDPPEDSVVT 699
T + + SD E+ V T
Sbjct: 785 --TMADLTIADSDNDEEGVDT 803
Score = 44 (20.5 bits), Expect = 1.1e-26, Sum P(5) = 1.1e-26
Identities = 15/76 (19%), Positives = 34/76 (44%)
Query: 747 DDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVE----IHDLAGS 802
++G + + P + I + ++IS K+ L+++ E K IV + +L
Sbjct: 798 EEGVDTNKEEPKQPPTRIFEPDFISCKMAKTLEVVREILEKKEKVVIVSQWTSVLNLVEK 857
Query: 803 NGSSAVHSKSPIEGPI 818
+ + H+ + I G +
Sbjct: 858 HIQAGGHNYTSITGQV 873
Score = 37 (18.1 bits), Expect = 1.6e-47, Sum P(5) = 1.6e-47
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 753 PTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDL 799
P + AD+ +L + + + L + +N K +EIH+L
Sbjct: 619 PMKTGMADRVNLLTKNLMLRRTKDQQCALTNKKIVNLKEKKIEIHEL 665
>ASPGD|ASPL0000065871 [details] [associations]
symbol:AN7538 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
OrthoDB:EOG44XNQX RefSeq:XP_680807.1 ProteinModelPortal:Q5AVZ2
EnsemblFungi:CADANIAT00000644 GeneID:2869681 KEGG:ani:AN7538.2
HOGENOM:HOG000215811 OMA:FMKRRTK Uniprot:Q5AVZ2
Length = 1132
Score = 312 (114.9 bits), Expect = 2.7e-52, Sum P(5) = 2.7e-52
Identities = 68/157 (43%), Positives = 100/157 (63%)
Query: 815 EGP-IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVML 873
E P K IVFS +T MLD +E L++ I Y R DG+M R+ +++ R V+L
Sbjct: 912 EAPDFKFIVFSVFTSMLDKIEPFLSRAGIGYARYDGSMRNDLREASLEKLRNHRGTRVLL 971
Query: 874 MSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDR 933
SL+AG LGLN+ AAS V++L+ +WNP E+QA+DR HR+ QT V + ++ I+DTVE+R
Sbjct: 972 CSLRAGALGLNLTAASRVVILEPFWNPFVEEQAIDRVHRLNQTVDVKIYKMIIKDTVEER 1031
Query: 934 ILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
IL LQ+ KR++ +G A++LT+ D+ LF
Sbjct: 1032 ILDLQERKRELANVTI---EGKTAAAKLTMNDMMALF 1065
Score = 146 (56.5 bits), Expect = 2.7e-52, Sum P(5) = 2.7e-52
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TLVV P ++++QW E++ KV L VL+YHG +R K L YDVV+TTY +T+E
Sbjct: 420 TLVVAPLALIKQWESEIKTKVEPSHRLRVLVYHGNARAKATDSLDDYDVVITTYGTLTSE 479
Score = 130 (50.8 bits), Expect = 2.7e-52, Sum P(5) = 2.7e-52
Identities = 56/184 (30%), Positives = 80/184 (43%)
Query: 557 KKLQAVLRAIMLRRTK-----------GTFIDGQ---PIINLPPKTISLTKVDFSKEEWA 602
++LQ VL+A M RRTK G DG+ P + + + VDF E
Sbjct: 578 ERLQVVLKAFMKRRTKDVLKLNANLKPGEEADGEKKNPGFQIVKREVVKVAVDFMPGEKN 637
Query: 603 FYKKLES---DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE---YDFD-- 654
FY++LE +SL+K G +YA L +LLRLRQ C+HP LV+ D D
Sbjct: 638 FYERLEQRTDNSLEKMM-----GDSKIDYAGALTLLLRLRQCCNHPDLVRSDLAKDKDVL 692
Query: 655 -SVGKISGEMA--KRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCAS 711
G + + + K+ D + DL L S C +C V + G C C
Sbjct: 693 LQTGTSNSQSSSKKQDELDDVADLFGALSVVSKKCDICQ-MTLSQVESTGGGSRCSDCEK 751
Query: 712 EYIT 715
++ T
Sbjct: 752 DFNT 755
Score = 102 (41.0 bits), Expect = 2.7e-52, Sum P(5) = 2.7e-52
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLH-------CL--GGILADDQGLGKTISIIALIQMQR 321
L V LL HQ+ + WM KE SL L GGILADD GLGKT+ IAL+ +
Sbjct: 321 LRVQLLPHQRQGVNWMCAKEIGSLKPRKEEKGVLPKGGILADDMGLGKTVQAIALMLTNQ 380
Query: 322 SLQSKSKTE 330
+ S+ +
Sbjct: 381 KPKDGSRRQ 389
Score = 82 (33.9 bits), Expect = 2.7e-52, Sum P(5) = 2.7e-52
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAK-RSTIKIPISRNSLHGYKKLQAVLRAIML 568
V W+R++LDEA TIKN + +A +L A+ R + +N+L +LQ+++R + +
Sbjct: 495 VYWYRIILDEAHTIKNRNAKATQAAYALDAEYRWCLSGTPMQNNLD---ELQSLIRFLRI 551
Query: 569 R 569
+
Sbjct: 552 K 552
Score = 41 (19.5 bits), Expect = 2.6e-35, Sum P(4) = 2.6e-35
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 444 TNEVPKQPSVDEEEADEKNGET 465
TNE +Q DE++ + ET
Sbjct: 284 TNETDEQEVEDEKDGSDAGSET 305
Score = 41 (19.5 bits), Expect = 2.6e-35, Sum P(4) = 2.6e-35
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 305 QGLGKTISIIALIQMQRSLQSKSKTEV 331
+GL K+ ++A + + + +S+ KT+V
Sbjct: 414 KGLSKSTLVVAPLALIKQWESEIKTKV 440
Score = 39 (18.8 bits), Expect = 4.2e-35, Sum P(4) = 4.2e-35
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 454 DEEEA-DEKNGETYGLSSE 471
DE+E DEK+G G +E
Sbjct: 288 DEQEVEDEKDGSDAGSETE 306
Score = 37 (18.1 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 189 RDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERL 248
R+ + + DD +G ++P S G +S+ + GG SD DE A GG E L
Sbjct: 804 RNRKIVMDSDDEEEDDGEWLVPESQRTG--LSLGKVGG-SD--------DEDAEGGGEWL 852
>MGI|MGI:1921294 [details] [associations]
symbol:Ttf2 "transcription termination factor, RNA
polymerase II" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1921294 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0006353 EMBL:AL669937
EMBL:AL669872 GeneTree:ENSGT00700000104545 KO:K15173 CTD:8458
HOGENOM:HOG000154708 HOVERGEN:HBG053179 OMA:WCGSIPW
OrthoDB:EOG4GMTWH EMBL:BC087733 EMBL:BC096625 IPI:IPI00112371
RefSeq:NP_001013044.2 UniGene:Mm.270961 ProteinModelPortal:Q5NC05
SMR:Q5NC05 IntAct:Q5NC05 STRING:Q5NC05 PhosphoSite:Q5NC05
PRIDE:Q5NC05 Ensembl:ENSMUST00000076941 GeneID:74044 KEGG:mmu:74044
UCSC:uc008qrb.2 NextBio:339618 Bgee:Q5NC05 Genevestigator:Q5NC05
GermOnline:ENSMUSG00000033222 Uniprot:Q5NC05
Length = 1138
Score = 312 (114.9 bits), Expect = 3.5e-52, Sum P(5) = 3.5e-52
Identities = 85/271 (31%), Positives = 136/271 (50%)
Query: 710 ASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGG-GSPTDSPFADKSGILDN- 767
A E+ + CPA + V+ L+ C S D + G++ +
Sbjct: 868 AQEFGSSVSQGCPAADSQRPSTVHVLSQLLRLRQCCCHLSLLKSALDPTELESEGLVLSL 927
Query: 768 -EYISSKIRTVLDILHTQ--CELNTKCSIVEIHD--LAGSNGSSAVHSKSPIE-GP--IK 819
E +S+ + +D+ LN C E+ D + SS + I+ GP K
Sbjct: 928 EEQLSALTLSKVDVSEPSPTVSLNGTCFKAELFDDTRRSTKVSSLLAELEAIQKGPGSQK 987
Query: 820 SIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG 879
S++ SQWT ML +V L ++ + Y +DG+++ R V+ FN + VML+SL AG
Sbjct: 988 SVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAG 1047
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
+GLN+ +H+ LLD+ WNP+ EDQA DR +R+GQ + V + R TVE++IL+LQ+
Sbjct: 1048 GVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQE 1107
Query: 940 DKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
K+ + +G T +LT+ DL+ LF
Sbjct: 1108 KKKDLAKQVLSGSEGPVT--KLTLADLKILF 1136
Score = 161 (61.7 bits), Expect = 3.5e-52, Sum P(5) = 3.5e-52
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
++GTL+VCPAS++ W E+E +V L + +YHG +R++ L+ YD+V+TTYS++
Sbjct: 617 SSGTLIVCPASLIHHWKNEVEKRVTSNR-LRIYLYHGPNRSRHAKVLSTYDIVITTYSLL 675
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSS 470
E+P + E E N G S+
Sbjct: 676 AKEIPT--TKQEGEVPGANLSVEGTSA 700
Score = 144 (55.7 bits), Expect = 3.5e-52, Sum P(5) = 3.5e-52
Identities = 35/62 (56%), Positives = 45/62 (72%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
P GL V LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI +++ Q K
Sbjct: 539 PAGL-KVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTKKN-QQK 594
Query: 327 SK 328
SK
Sbjct: 595 SK 596
Score = 102 (41.0 bits), Expect = 3.5e-52, Sum P(5) = 3.5e-52
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQAVL 563
PL +V W R++LDEA +KN R Q + A C L+A+ + PI N L Y L L
Sbjct: 701 PLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYS-LMKFL 759
Query: 564 R 564
R
Sbjct: 760 R 760
Score = 89 (36.4 bits), Expect = 7.6e-51, Sum P(5) = 7.6e-51
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 535 CSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTK 593
CS + S K + S+ G ++L + ++++LRRTK G+P++ LP + L +
Sbjct: 761 CSPFDEFSLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHR 820
Query: 594 VDFSKEEWAFY 604
+ S++E A Y
Sbjct: 821 LKLSEDERAVY 831
Score = 52 (23.4 bits), Expect = 3.5e-52, Sum P(5) = 3.5e-52
Identities = 17/52 (32%), Positives = 20/52 (38%)
Query: 129 EKISSQ-QALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGP 179
EK+ Q QAL+ L A TK K S + S I HL P
Sbjct: 417 EKLLKQIQALEDALSALALSPEQGTKEKCSAQEPEQSNITKAAAAPLHLVPP 468
Score = 52 (23.4 bits), Expect = 2.1e-24, Sum P(5) = 2.1e-24
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 630 NILLMLLRLRQACDHPLLVK 649
++L LLRLRQ C H L+K
Sbjct: 891 HVLSQLLRLRQCCCHLSLLK 910
>FB|FBgn0037531 [details] [associations]
symbol:CG10445 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000381
GeneTree:ENSGT00700000104545 FlyBase:FBgn0037531 GenomeRNAi:40938
NextBio:821377 RefSeq:NP_001246974.1 RefSeq:NP_649751.2
UniGene:Dm.24034 ProteinModelPortal:Q9VHY2 IntAct:Q9VHY2
EnsemblMetazoa:FBtr0300685 EnsemblMetazoa:FBtr0304704 GeneID:40938
KEGG:dme:Dmel_CG10445 UCSC:CG10445-RA InParanoid:Q9VHY2 OMA:NLNVANH
OrthoDB:EOG40ZPCJ Bgee:Q9VHY2 Uniprot:Q9VHY2
Length = 945
Score = 265 (98.3 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 62/157 (39%), Positives = 89/157 (56%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAV--KDFNTDREITVMLMSL 876
K IV SQW L +V L + + LD L A++R + +DFN + E V+L+SL
Sbjct: 789 KIIVTSQWVSYLAIVRKRLQD--LSWETLDFNGQLTAKEREIVLRDFNANNEKRVLLLSL 846
Query: 877 KAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936
AG +GLN+ A+H++++DL WNP E QA DR +R GQT+P + R +DTVE RI
Sbjct: 847 TAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKS 906
Query: 937 LQDDKRKMVASAFGEDQGGGT---ASRLTVEDLRYLF 970
LQD K ++ E+ G T L + +L+ LF
Sbjct: 907 LQDCKLEIAKVVLPEEGGEVTKCVGGGLNLAELKKLF 943
Score = 153 (58.9 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-YDVVLTTYS 441
P+A TLVVCP SV+ QWA E+ KV A + VL +HG +R + +E + YD+V+T+Y+
Sbjct: 368 PSANTLVVCPMSVMCQWAHEVASKVAQNA-IRVLTFHGPNRHEIGIEAFRSYDLVITSYN 426
Query: 442 IVTNEVPK 449
+V NE+ +
Sbjct: 427 LVVNELKR 434
Score = 137 (53.3 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKT 329
LL V LLKHQ+ L WM +E + + GGILADD GLGKT+S+IALI +++ +
Sbjct: 204 LLLVRLLKHQQSCLKWMQFRERQKIS--GGILADDMGLGKTLSMIALILASEETKNRKRE 261
Query: 330 E 330
E
Sbjct: 262 E 262
Score = 94 (38.1 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 552 SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 611
S+ G+++L +++ +MLRRTK + LP I L V SK E A Y+ L + S
Sbjct: 516 SMLGHRRLNFIIKPLMLRRTKQKLQASGDMPALPSLKIELICVQLSKTEMAVYQILSAIS 575
Query: 612 LKKFKAFA---DAGTVNQNYANI 631
K F F + G + NY ++
Sbjct: 576 KKIFTQFLLQREKGNSDLNYYSL 598
Score = 89 (36.4 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 502 YG-CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA 539
YG PL V W RV+LDEA I+N +T + C LRA
Sbjct: 435 YGNTSPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRA 473
Score = 66 (28.3 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 631 ILLMLLRLRQACDHP-LLV-------KEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETS 682
IL++LLRLRQ C HP L++ D +V + ++ +L D+L +L ET
Sbjct: 638 ILVLLLRLRQFCCHPGLMIGMLRGALTAEDVQNVKVDASDVEGQLKMDVLAELDKFDETD 697
Query: 683 SAICCVCSDPPEDS 696
S C C + EDS
Sbjct: 698 SEDDC-CDE--EDS 708
Score = 44 (20.5 bits), Expect = 1.4e-40, Sum P(6) = 1.4e-40
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 442 IVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
+ E+ K D+EE K E Y + + + K KKI
Sbjct: 278 VYCKEIRKISMFDDEEESGKEEEQYEPPEKRTCHVKTKKI 317
Score = 39 (18.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 629 ANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSS 683
A +L+ LL+ +Q+C + +E S G ++ +M M+ +L+ ET +
Sbjct: 203 ALLLVRLLKHQQSCLKWMQFRERQKISGGILADDMGLGKTLSMIALILASEETKN 257
Score = 37 (18.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 255 EDLNQPKVEATLPDGLLSVNLL 276
ED+ KV+A+ +G L +++L
Sbjct: 666 EDVQNVKVDASDVEGQLKMDVL 687
>UNIPROTKB|F1N2E8 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00700000104545 OMA:WCGSIPW
EMBL:DAAA02007409 IPI:IPI00710264 UniGene:Bt.10162 PRIDE:F1N2E8
Ensembl:ENSBTAT00000033711 Uniprot:F1N2E8
Length = 1163
Score = 289 (106.8 bits), Expect = 1.6e-51, Sum P(6) = 1.6e-51
Identities = 60/156 (38%), Positives = 96/156 (61%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G KS++ SQWT ML +V L + Y +DG+++ R V+ FN+ R VML+S
Sbjct: 1009 GSQKSVIVSQWTSMLKVVALHLKRCGFTYATIDGSVNPKQRMDLVEAFNSPRGPQVMLIS 1068
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
L AG +GLN+ +H+ LLD+ WNP+ EDQA DR +R+GQ + V + + +TVE++IL
Sbjct: 1069 LLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHKFVCEETVEEKIL 1128
Query: 936 KLQDDKRKMVASAF-GEDQGGGTASRLTVEDLRYLF 970
+LQ+ K+ + G ++ ++L++ DL+ LF
Sbjct: 1129 QLQEKKKDLAKQILSGSEE---FVTKLSLADLKVLF 1161
Score = 158 (60.7 bits), Expect = 1.6e-51, Sum P(6) = 1.6e-51
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTL++CPAS++ W E+E V L V +YHG +R + L+ YD+V+TTYS++
Sbjct: 644 GTLIICPASLIHHWKNEVEKHVSHNR-LRVCLYHGPNRNQHAKVLSTYDIVITTYSLLAK 702
Query: 446 EVPKQPSVDEEEADEKNGETYGLSS 470
E+P + +E+ N G SS
Sbjct: 703 EIPT--AKQDEQIPGANPSVEGTSS 725
Score = 153 (58.9 bits), Expect = 1.6e-51, Sum P(6) = 1.6e-51
Identities = 34/66 (51%), Positives = 46/66 (69%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
P GL ++LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI Q+ + K
Sbjct: 567 PAGL-KISLLPHQKQALAWLLWRESQKPR--GGILADDMGLGKTLTMIALILTQKKSKEK 623
Query: 327 SKTEVL 332
+T L
Sbjct: 624 DETTAL 629
Score = 104 (41.7 bits), Expect = 1.6e-51, Sum P(6) = 1.6e-51
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQ 560
PL +V W R++LDEA +KN R Q + A C L+A+ + PI N L Y L+
Sbjct: 726 PLLRVVWARLILDEAHNVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLK 782
Score = 79 (32.9 bits), Expect = 5.6e-49, Sum P(6) = 5.6e-49
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTKVDFSKEEWAF 603
K + S G ++L + R+++LRRTK G+P++ LP + L + S++E
Sbjct: 796 KSQVDNGSKKGGERLNILTRSLLLRRTKDQLDSTGKPLVVLPHRKFQLHHLKLSEDEETV 855
Query: 604 YKKL 607
Y L
Sbjct: 856 YSVL 859
Score = 54 (24.1 bits), Expect = 1.6e-51, Sum P(6) = 1.6e-51
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 621 AGT-VNQNYANILLMLLRLRQACDHPLLVK 649
AG+ + +IL LLRLRQ C H L+K
Sbjct: 906 AGSQATSSAVHILSQLLRLRQCCCHLSLLK 935
Score = 50 (22.7 bits), Expect = 1.6e-51, Sum P(6) = 1.6e-51
Identities = 32/114 (28%), Positives = 50/114 (43%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANV---ASADY-EKISS 133
Q K+ PG S + S+ A +L+ QLQ +A+V A D +K+
Sbjct: 396 QRKVSSAPGVSKKGEPSDPAAQRV-FLTT-----QLQQRKSTLASVNIQALPDKGQKLFK 449
Query: 134 Q-QALKRTLPAFPQPHSLNTKSKSSV-ENMNSSQIRDTFGNAYHLAGPSTVNSK 185
Q Q L+ L A +TK KS+ E S+ I++T + HL P + +
Sbjct: 450 QIQELEEVLSALALSPEQDTKEKSNTQEPQQSNFIKETT-HPPHLVPPKPLQGQ 502
Score = 44 (20.5 bits), Expect = 2.1e-39, Sum P(5) = 2.1e-39
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 323 LQSKSKTEVLGNQKTEXXXXXXXXXXXXXXXXKVKETGESDDIKPVPEV 371
L+ KSK +V GN E K E ++ KP+P +
Sbjct: 221 LEMKSK-QVRGNVLREPSAFQVKSDSESHSVQKESEPPTEEETKPLPPI 268
>UNIPROTKB|I3L7V5 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:CU468873 EMBL:AEMK01166609
EMBL:CU207228 Ensembl:ENSSSCT00000031433 Uniprot:I3L7V5
Length = 1147
Score = 310 (114.2 bits), Expect = 1.7e-50, Sum P(5) = 1.7e-50
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 787 LNTKCSIVEIHDLAGSNG--SSAVHSKSPIE---GPIKSIVFSQWTRMLDLVENSLNQHC 841
LN C VE+ D + SS + I G KS++ SQWT ML++V L +H
Sbjct: 959 LNGTCFKVELFDSMRQSTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKRHR 1018
Query: 842 IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPT 901
+ Y +DG+++ R V+ FN+ VML+SL AG +GLN+ +H+ LLD+ WNP+
Sbjct: 1019 VTYATIDGSVNPKQRMDLVEAFNSSGGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPS 1078
Query: 902 TEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRL 961
EDQA DR +R+GQ + V + R TVE++IL+LQ+ K+ + G ++L
Sbjct: 1079 LEDQASDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQILSGS--GEFVTKL 1136
Query: 962 TVEDLRYLF 970
T+ DL+ LF
Sbjct: 1137 TLADLKILF 1145
Score = 147 (56.8 bits), Expect = 1.7e-50, Sum P(5) = 1.7e-50
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CPAS++ W E++ +V + L V +YHG +R ++ L+ YD+V+TTYS++ E
Sbjct: 628 TLIICPASLIHHWKNEVQKRVCNNE-LRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 686
Query: 447 VP 448
+P
Sbjct: 687 IP 688
Score = 133 (51.9 bits), Expect = 1.7e-50, Sum P(5) = 1.7e-50
Identities = 38/78 (48%), Positives = 49/78 (62%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGIL--ADDQGLGKT 310
+LE A P GL V LL HQK ALAW+L +E++ GGIL ADD GLGKT
Sbjct: 531 SLESRPDETAVAEDPAGL-KVPLLLHQKQALAWLLWRESQKPP--GGILFPADDMGLGKT 587
Query: 311 ISIIALIQMQRSLQSKSK 328
+++IALI Q++ Q K+K
Sbjct: 588 LTMIALILTQKN-QEKNK 604
Score = 110 (43.8 bits), Expect = 1.7e-50, Sum P(5) = 1.7e-50
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQ 560
PL ++ W R++LDEA T+KN R Q + A C L+A+ + PI N L Y L+
Sbjct: 709 PLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLK 765
Score = 88 (36.0 bits), Expect = 3.1e-48, Sum P(5) = 3.1e-48
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 535 CSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTK 593
CS + S K + S G ++L + ++++LRRTK G+P++ LP + L +
Sbjct: 769 CSPFDEFSLWKSQVDNGSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHR 828
Query: 594 VDFSKEEWAFYKKLESDSLKKFKAF 618
+ S++E Y L + S +++
Sbjct: 829 LKLSEDEETVYNVLFARSRSDLQSY 853
Score = 55 (24.4 bits), Expect = 1.7e-50, Sum P(5) = 1.7e-50
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 630 NILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCV 688
+IL LLRLRQ C H L+K D S + L + LS L +S + V
Sbjct: 900 HILSQLLRLRQCCCHLSLLKSA-LDPTELKSEGLVLSLEEQLSALTLSELHSSESSASV 957
>UNIPROTKB|F1SAY2 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:CU468873
EMBL:AEMK01166609 EMBL:CU207228 Ensembl:ENSSSCT00000007376
Uniprot:F1SAY2
Length = 1169
Score = 310 (114.2 bits), Expect = 2.0e-50, Sum P(5) = 2.0e-50
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 787 LNTKCSIVEIHDLAGSNG--SSAVHSKSPIE---GPIKSIVFSQWTRMLDLVENSLNQHC 841
LN C VE+ D + SS + I G KS++ SQWT ML++V L +H
Sbjct: 981 LNGTCFKVELFDSMRQSTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKRHR 1040
Query: 842 IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPT 901
+ Y +DG+++ R V+ FN+ VML+SL AG +GLN+ +H+ LLD+ WNP+
Sbjct: 1041 VTYATIDGSVNPKQRMDLVEAFNSSGGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPS 1100
Query: 902 TEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRL 961
EDQA DR +R+GQ + V + R TVE++IL+LQ+ K+ + G ++L
Sbjct: 1101 LEDQASDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQILSGS--GEFVTKL 1158
Query: 962 TVEDLRYLF 970
T+ DL+ LF
Sbjct: 1159 TLADLKILF 1167
Score = 147 (56.8 bits), Expect = 2.0e-50, Sum P(5) = 2.0e-50
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CPAS++ W E++ +V + L V +YHG +R ++ L+ YD+V+TTYS++ E
Sbjct: 650 TLIICPASLIHHWKNEVQKRVCNNE-LRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 708
Query: 447 VP 448
+P
Sbjct: 709 IP 710
Score = 133 (51.9 bits), Expect = 2.0e-50, Sum P(5) = 2.0e-50
Identities = 38/78 (48%), Positives = 49/78 (62%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGIL--ADDQGLGKT 310
+LE A P GL V LL HQK ALAW+L +E++ GGIL ADD GLGKT
Sbjct: 553 SLESRPDETAVAEDPAGL-KVPLLLHQKQALAWLLWRESQKPP--GGILFPADDMGLGKT 609
Query: 311 ISIIALIQMQRSLQSKSK 328
+++IALI Q++ Q K+K
Sbjct: 610 LTMIALILTQKN-QEKNK 626
Score = 110 (43.8 bits), Expect = 2.0e-50, Sum P(5) = 2.0e-50
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQ 560
PL ++ W R++LDEA T+KN R Q + A C L+A+ + PI N L Y L+
Sbjct: 731 PLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLK 787
Score = 88 (36.0 bits), Expect = 3.6e-48, Sum P(5) = 3.6e-48
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 535 CSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTK 593
CS + S K + S G ++L + ++++LRRTK G+P++ LP + L +
Sbjct: 791 CSPFDEFSLWKSQVDNGSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHR 850
Query: 594 VDFSKEEWAFYKKLESDSLKKFKAF 618
+ S++E Y L + S +++
Sbjct: 851 LKLSEDEETVYNVLFARSRSDLQSY 875
Score = 55 (24.4 bits), Expect = 2.0e-50, Sum P(5) = 2.0e-50
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 630 NILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCV 688
+IL LLRLRQ C H L+K D S + L + LS L +S + V
Sbjct: 922 HILSQLLRLRQCCCHLSLLKSA-LDPTELKSEGLVLSLEEQLSALTLSELHSSESSASV 979
>UNIPROTKB|E2RGF7 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0008270 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AAEX03011013
Ensembl:ENSCAFT00000015640 Uniprot:E2RGF7
Length = 1150
Score = 302 (111.4 bits), Expect = 1.1e-49, Sum P(6) = 1.1e-49
Identities = 63/156 (40%), Positives = 94/156 (60%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G KS++ SQWT ML +V L + + Y ++G++ R V+ FN+ R VML+S
Sbjct: 996 GSQKSVIVSQWTSMLQIVAWHLKKRGLTYATINGSVRPKQRMDLVEAFNSSRSPQVMLIS 1055
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
L AG +GLN+ +H+ LLD+ WNP+ EDQA DR +R+GQ + V V + TVE++IL
Sbjct: 1056 LSAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVVHKFICEGTVEEKIL 1115
Query: 936 KLQDDKRKMVASAFGEDQGGGTA-SRLTVEDLRYLF 970
LQ+ K+ + G GT+ +LT+ DL+ LF
Sbjct: 1116 HLQEKKKTLAKQVLS---GSGTSVKKLTLADLKVLF 1148
Score = 153 (58.9 bits), Expect = 1.1e-49, Sum P(6) = 1.1e-49
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
P GL V LL HQK ALAW+L +E++ H GGILADD GLGKT+++IALI Q++ + K
Sbjct: 547 PAGL-KVPLLLHQKQALAWLLWRESQKPH--GGILADDMGLGKTLTMIALILTQKN-REK 602
Query: 327 SKTE 330
+K E
Sbjct: 603 TKEE 606
Score = 149 (57.5 bits), Expect = 1.1e-49, Sum P(6) = 1.1e-49
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTL++CPAS++ W E+ +V L V +YHG +R + L+ YD+V+TTY+++
Sbjct: 627 GTLIICPASLIHHWKNEVMKRVSSNT-LRVCLYHGPNRDQRAKVLSTYDIVITTYNLLAK 685
Query: 446 EVPKQ 450
E+P Q
Sbjct: 686 EIPTQ 690
Score = 94 (38.1 bits), Expect = 1.1e-49, Sum P(6) = 1.1e-49
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA--KRSTIKIPISRNSLHGYKKLQ 560
PL ++ W R++LDEA ++N R Q + A C L+A + + PI L Y L+
Sbjct: 711 PLLRIVWARIILDEAHCVRNPRVQTSMAVCKLQAHARWAVTGTPIQNTLLDMYSLLK 767
Score = 86 (35.3 bits), Expect = 7.2e-49, Sum P(6) = 7.2e-49
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTKVDFSKEEWAF 603
K + S G ++L + ++++LRRTK G+P++ LP + + ++ S++E
Sbjct: 781 KSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGKPLVMLPQRQFHVHRLKLSEDEENV 840
Query: 604 YKKLESDSLKKFKAFADAG 622
Y L + S +++ AG
Sbjct: 841 YSVLLAKSRSALQSYLKAG 859
Score = 50 (22.7 bits), Expect = 1.1e-49, Sum P(6) = 1.1e-49
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 631 ILLMLLRLRQACDHPLLVK 649
+L LLRLRQ C H L+K
Sbjct: 904 LLTRLLRLRQCCCHLSLLK 922
Score = 42 (19.8 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 720 MCPAPRCKEQLGADVVFSKTTL-KNCV 745
+CPA C+ L A + S L ++CV
Sbjct: 31 VCPADACRFVLAAAIPVSHCLLHEDCV 57
Score = 40 (19.1 bits), Expect = 1.1e-49, Sum P(6) = 1.1e-49
Identities = 24/110 (21%), Positives = 41/110 (37%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGN--KNVGQLQTVNPRIANVASADYEKISSQQ 135
Q K G S + S+ QA YL+ + L++VN I + + + Q
Sbjct: 376 QRKTPPATGGSRKVEPSD-QAAQRVYLTAQLRQKKSTLKSVN--IQALPDKGQKLLKQIQ 432
Query: 136 ALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSK 185
L+ L A +T KS+ + + I + HL P + +
Sbjct: 433 ELEEALGALALSPEPDTNEKSNTQVLQQKNITKATTDPPHLVPPKPLQGE 482
Score = 37 (18.1 bits), Expect = 8.8e-27, Sum P(4) = 8.8e-27
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 420 GGSRTKDPVELAKYDVVLT 438
GGSR +P + A V LT
Sbjct: 384 GGSRKVEPSDQAAQRVYLT 402
>FB|FBgn0002542 [details] [associations]
symbol:lds "lodestar" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS;IDA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007143 "female
meiosis" evidence=IMP] [GO:0034454 "microtubule anchoring at
centrosome" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0007283 GO:GO:0007143 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034454 GO:GO:0008094 GO:GO:0006353
GeneTree:ENSGT00700000104545 EMBL:X62629 PIR:A40580
RefSeq:NP_524850.2 UniGene:Dm.20310 ProteinModelPortal:P34739
SMR:P34739 DIP:DIP-20026N IntAct:P34739 MINT:MINT-947822
STRING:P34739 PaxDb:P34739 EnsemblMetazoa:FBtr0081758 GeneID:45894
KEGG:dme:Dmel_CG2684 CTD:45894 FlyBase:FBgn0002542
InParanoid:P34739 KO:K15173 OMA:QRHALAW OrthoDB:EOG47M0D4
PhylomeDB:P34739 GenomeRNAi:45894 NextBio:838462 Bgee:P34739
GermOnline:CG2684 Uniprot:P34739
Length = 1061
Score = 293 (108.2 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 64/153 (41%), Positives = 97/153 (63%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLK 877
K+IV SQWT +LD++ + L++ + L+GT+ + R V +FN + + V+L+SL
Sbjct: 910 KAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLT 969
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG +GLN++ A+H++LLDL WNP E QA DR +R+GQ + V + + DTVE RI L
Sbjct: 970 AGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGL 1029
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
QD K + A G G +S+LT++DL+ LF
Sbjct: 1030 QDKKLDL---ADGVLTGAKVSSKLTIDDLKGLF 1059
Score = 159 (61.0 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTLVVCPAS+LRQW E+E KV + L+V ++HG +R L YD+V+TTY IV
Sbjct: 526 GTLVVCPASLLRQWESEVESKV-SRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAR 584
Query: 446 E 446
E
Sbjct: 585 E 585
Score = 147 (56.8 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
+LEDL P+V A P GL V+L+ HQK ALAWM +E R L GGILADD GLGKT++
Sbjct: 418 SLEDLPGPEVLAEDPVGL-KVSLMNHQKHALAWMSWRE-RKLP-RGGILADDMGLGKTLT 474
Query: 313 IIALIQMQRSLQSKSK 328
+I+ + ++ Q S+
Sbjct: 475 MISSVLACKNGQEMSE 490
Score = 102 (41.0 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 42/154 (27%), Positives = 65/154 (42%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAK-RSTIK-IPISRNSLHGYKKLQAVLRAIM 567
V W R++LDEA ++NH++Q + A C LR K R + PI L Y L+ LR
Sbjct: 595 VKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLK-FLRCSP 653
Query: 568 LR--RTKGTFID-----GQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD 620
T +ID GQ +NL K++ L + + L + L+ + D
Sbjct: 654 FDDLHTWKKWIDNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLD 713
Query: 621 AGTVNQNYANILLMLLRLRQACDHPLLVKEYDFD 654
+N Y ++ L H +E DF+
Sbjct: 714 KEEMNV-YQTVMTYSRTLFAQFLHQRAERETDFN 746
Score = 65 (27.9 bits), Expect = 1.5e-45, Sum P(4) = 1.5e-45
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 602 AFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
A+YK E KF A + +++ +IL++LLRLRQ C HP L+
Sbjct: 765 AYYKMHE-----KFARMAGSKKEVKSH-DILVLLLRLRQICCHPGLI 805
Score = 42 (19.8 bits), Expect = 2.7e-37, Sum P(4) = 2.7e-37
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 456 EEADEKNGETYGLSSEFSVNKKRKKI 481
+E E E+ SE NKKRK +
Sbjct: 486 QEMSEGKDESSDSDSEDDKNKKRKSV 511
>ASPGD|ASPL0000056426 [details] [associations]
symbol:AN0044 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000002 KO:K15505 RefSeq:XP_657648.1
ProteinModelPortal:Q5BHD6 STRING:Q5BHD6
EnsemblFungi:CADANIAT00002711 GeneID:2875817 KEGG:ani:AN0044.2
HOGENOM:HOG000040492 OMA:MDPWWSP OrthoDB:EOG4J40R2 Uniprot:Q5BHD6
Length = 1202
Score = 237 (88.5 bits), Expect = 1.6e-48, Sum P(6) = 1.6e-48
Identities = 58/170 (34%), Positives = 92/170 (54%)
Query: 804 GSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 863
G S V + ++ V +Q+T+ + L+Q L + K
Sbjct: 1038 GISFVRLDGTMAQKARAEVLAQFTKFETFTQEELDQA----ESTSAPSGLTPTPKTPKQS 1093
Query: 864 NTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTR 923
++ TV+L+SLKAG +GLN+ AAS+V ++D WW+ E QA+DR HR+GQ R V V R
Sbjct: 1094 SSPSSPTVLLISLKAGGVGLNLTAASNVFMMDPWWSFAIEAQAIDRVHRMGQLRDVNVVR 1153
Query: 924 LTIRDTVEDRILKLQDDKRKM-VASAFGEDQGGGTASRLT--VEDLRYLF 970
++D++E+R+L++Q+ RKM +A + G G R +E+LR LF
Sbjct: 1154 FIVKDSIEERMLRVQE--RKMGIAGSLGLMGEGNEEERRKERIEELRLLF 1201
Score = 186 (70.5 bits), Expect = 1.6e-48, Sum P(6) = 1.6e-48
Identities = 58/216 (26%), Positives = 104/216 (48%)
Query: 541 RSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLTKVDFSK 598
++ I P S+ + +Q VL ++LRRTK +G+P++ LP +TI + KV+ +
Sbjct: 712 KTFITAPFESKEVVRAISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELIE 771
Query: 599 EEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF---DS 655
+E Y + + + + F + AGT+ ++Y+ I LLRLRQ C HP+L + +
Sbjct: 772 QEREIYNHIYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPILTRNKAIVADEE 831
Query: 656 VGKISGEMAKRLPRDM-LIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYI 714
+ + L DM L +L++R +++ ++PP+ S+ H Q +E
Sbjct: 832 DAAAAADQDSDLKDDMDLQELINRFTATTSDAESSNEPPDPSM-KFTAHAL-RQIQTES- 888
Query: 715 TGDDNMCPAPRCKEQLGADVVFSK---TTLKNCVSD 747
G+ CP C E+ D + + K C+ D
Sbjct: 889 AGE---CPI--CSEEPMIDPAVTACWHSACKGCLKD 919
Score = 151 (58.2 bits), Expect = 2.2e-24, Sum P(5) = 2.2e-24
Identities = 60/198 (30%), Positives = 89/198 (44%)
Query: 676 LSRLETSSA-ICCVCSDPPE-DSVVTMCGHVFCYQCASEYITGDDNMCPAPRC---KEQL 730
L +++T SA C +CS+ P D VT C H C C +YI + PRC + L
Sbjct: 881 LRQIQTESAGECPICSEEPMIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADL 940
Query: 731 GADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTK 790
+F ++ +PT+ + G DN Y SS Q +
Sbjct: 941 NPQDIFEVVRYQS-----PNTTPTEQTPSSIGG--DNVYSSS-----------QPPPPPR 982
Query: 791 CSIVEIHDLAGSNGSSA-VHSKSP--IEGPI--KSIVFSQWTRMLDLVENSLNQHCIQYR 845
S+ I+ L+ S +SA +H+ + P KS+VFSQ+T LDL+ L + I +
Sbjct: 983 ISLRRINPLSPSAHTSAKIHALLAHLVRVPAGTKSVVFSQFTSFLDLIGPQLTKAGISFV 1042
Query: 846 RLDGTMSLPARDRAVKDF 863
RLDGTM+ AR + F
Sbjct: 1043 RLDGTMAQKARAEVLAQF 1060
Score = 109 (43.4 bits), Expect = 1.6e-48, Sum P(6) = 1.6e-48
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 295 HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGN 334
HCLGGILAD+ GLGKTI +++L+ R+L T+ LGN
Sbjct: 509 HCLGGILADEMGLGKTIEMLSLVHSHRNLPP---TQSLGN 545
Score = 98 (39.6 bits), Expect = 1.6e-48, Sum P(6) = 1.6e-48
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA 539
G L V +FRV+LDEA IKN R++ ARAC L+A
Sbjct: 641 GNLFSVDFFRVILDEAHIIKNRRSKTARACYDLKA 675
Score = 82 (33.9 bits), Expect = 1.6e-48, Sum P(6) = 1.6e-48
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTY 440
TLVV P S+L QW E K ++ VL+Y+G + + E+ A +++LT+Y
Sbjct: 561 TLVVAPMSLLAQWEGEAL-KASRNGSMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTSY 619
Query: 441 SIVTNE 446
+V +E
Sbjct: 620 GVVMSE 625
Score = 73 (30.8 bits), Expect = 1.6e-48, Sum P(6) = 1.6e-48
Identities = 26/96 (27%), Positives = 44/96 (45%)
Query: 197 DDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDER-LIYQAALE 255
DD+I +L ++ M + G +D SG + + D+ +Y+ A
Sbjct: 363 DDEIKKQRKEGLLRAAEMADQEAKKLAKSGNTD----SGDEEPAELEQDQLDALYKKAQS 418
Query: 256 -DLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
D + P+ + P +++L K+QK AL WML KE
Sbjct: 419 FDFSMPEAQ---PPSSFAMDLRKYQKQALYWMLSKE 451
>DICTYBASE|DDB_G0282115 [details] [associations]
symbol:DDB_G0282115 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0282115 Pfam:PF00097 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000045 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_640361.1
ProteinModelPortal:Q54SZ4 EnsemblProtists:DDB0233436 GeneID:8623416
KEGG:ddi:DDB_G0282115 InParanoid:Q54SZ4 OMA:DIVITTH
ProtClustDB:CLSZ2430494 Uniprot:Q54SZ4
Length = 1640
Score = 324 (119.1 bits), Expect = 7.6e-48, Sum P(6) = 7.6e-48
Identities = 71/160 (44%), Positives = 101/160 (63%)
Query: 819 KSIVFSQWTRMLDLVENSLNQ-HCIQ---YRRLDGTMSLPARDRAVKDFNTDREITVMLM 874
K ++ SQWT MLDL+E SL Q H ++ Y R DG S +D+A+K N D ++ VML+
Sbjct: 1477 KCLIVSQWTSMLDLIEESLKQNHWVKNTHYVRYDGRCSHQQKDKAIKQLNEDDDVRVMLV 1536
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 934
SLK+G +GLN+ A+ V ++D WWN +E QA R HRIGQTR V V R + +++E RI
Sbjct: 1537 SLKSGGVGLNLTRANRVYMVDPWWNEASEVQAEGRVHRIGQTREVFVKRYIMNNSIEIRI 1596
Query: 935 LKLQDDKRKMVASAFGEDQGGGTAS----RLTVEDLRYLF 970
L+LQ+ K + +A+A D T +L VED++ LF
Sbjct: 1597 LELQESKNE-IANALLSDDYDPTKPFKNFKLNVEDIKLLF 1635
Score = 139 (54.0 bits), Expect = 7.6e-48, Sum P(6) = 7.6e-48
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF 618
L+ V+ I+LRR K +D LP K + +DF++ E Y L S + + +
Sbjct: 1218 LKKVINPILLRREKSEILD----FKLPKKNKEIVYLDFNENEADDYDTLFSVAQETLQKI 1273
Query: 619 ADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
+ G + +NYA +L +LLRLRQ CDH L++ D
Sbjct: 1274 SCRGGILKNYATVLALLLRLRQCCDHFHLIRHID 1307
Score = 105 (42.0 bits), Expect = 7.6e-48, Sum P(6) = 7.6e-48
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKV-PDKA-ALSVLIYHGGSRTK--DPVELAKYDVVLT 438
P A TL++CP S++ QW E++ + PD L + YHG +R K V+L D+V+T
Sbjct: 1043 PKA-TLIICPPSLVSQWKSEIKKHLKPDYFNKLEIFEYHGANRKKKLSGVDLNLMDIVIT 1101
Query: 439 TYSIVTNEVPK-QPSVDEEEADEKNG 463
T++ E K + + + NG
Sbjct: 1102 THNTFGIEFKKYEEDMQSAYTNNANG 1127
Score = 85 (35.0 bits), Expect = 7.6e-48, Sum P(6) = 7.6e-48
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 675 LLSRLETSS-AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDN----MCPAPRCKEQ 729
L+ ++TS+ IC C D + V CGH FC C + + DN + P C +
Sbjct: 1302 LIRHIDTSTDVICNSCKDIAVNPVKNHCGHDFCLDCFEDLVRNPDNNNNRVSLCPECDSE 1361
Query: 730 L 730
L
Sbjct: 1362 L 1362
Score = 71 (30.1 bits), Expect = 7.6e-48, Sum P(6) = 7.6e-48
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 292 RSLHCL-GGILADDQGLGKTISIIALIQMQRSLQSKSKTE 330
+S H + GG+L D+ GLGKT+ IALI + S + +
Sbjct: 976 KSKHKIAGGLLCDEMGLGKTVMSIALIMSNHPVFSTHRQQ 1015
Score = 56 (24.8 bits), Expect = 7.6e-48, Sum P(6) = 7.6e-48
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 226 GPSDLA-YRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALA 284
GPS +G + GG++ I L + + + PD L S L HQK L
Sbjct: 866 GPSQFPNILNGDGNSGNGGGNKNEINPRDLF-VKKALLTTEAPDSLKS-QLKHHQKEGLW 923
Query: 285 WMLQKETR 292
WML +E +
Sbjct: 924 WMLGREQK 931
Score = 46 (21.3 bits), Expect = 1.8e-37, Sum P(4) = 1.8e-37
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 442 IVTNEVPKQPSVDEEEADEKNGET-YGLSSEFS 473
I+ NE K+ ++D+EE D+ E Y +++ S
Sbjct: 174 IIINE-KKEINIDQEEEDQPTQEVDYSITNSSS 205
>SGD|S000004022 [details] [associations]
symbol:RAD5 "DNA helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0010994 "free ubiquitin chain polymerization"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IMP] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0006301 "postreplication repair"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
SGD:S000004022 Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 EMBL:BK006945
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006302
GO:GO:0000209 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000403 GO:GO:0009378
GO:GO:0008094 GO:GO:0042276 GeneTree:ENSGT00700000104586
GO:GO:0000400 GO:GO:0010994 KO:K15505 HOGENOM:HOG000040492
OMA:MDPWWSP OrthoDB:EOG4J40R2 EMBL:M96644 EMBL:Z73204 EMBL:S46103
PIR:S64859 RefSeq:NP_013132.1 ProteinModelPortal:P32849 SMR:P32849
DIP:DIP-5830N IntAct:P32849 MINT:MINT-2784640 STRING:P32849
PaxDb:P32849 PeptideAtlas:P32849 EnsemblFungi:YLR032W GeneID:850719
KEGG:sce:YLR032W CYGD:YLR032w NextBio:966793 Genevestigator:P32849
GermOnline:YLR032W Uniprot:P32849
Length = 1169
Score = 288 (106.4 bits), Expect = 9.4e-48, Sum P(6) = 9.4e-48
Identities = 61/159 (38%), Positives = 100/159 (62%)
Query: 821 IVFSQWTRMLDLVENSL----NQHCIQYRRLDGTMSLPAR-----DRAVKDFNTDREITV 871
++FSQ++ LD++E L ++ + + DG +SL R D AVKD++ + +
Sbjct: 1016 VIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERTSVLADFAVKDYSRQK---I 1072
Query: 872 MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931
+L+SLKAG +GLN+ ASH ++D WW+P+ EDQA+DR HRIGQT V V R I+D++E
Sbjct: 1073 LLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIE 1132
Query: 932 DRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+++L++Q+ KR + A D+ R +E+++ LF
Sbjct: 1133 EKMLRIQEKKRT-IGEAMDTDEDERRKRR--IEEIQMLF 1168
Score = 168 (64.2 bits), Expect = 9.4e-48, Sum P(6) = 9.4e-48
Identities = 38/114 (33%), Positives = 63/114 (55%)
Query: 541 RSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLTKVDFSK 598
++ + P S+N + + A+L ++LRRTK DG+P++ LPPK + + ++ FSK
Sbjct: 739 KTFVSTPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSK 798
Query: 599 EEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
+ YK L + K+ G + + Y+ IL+ +LRLRQ C HP L+ D
Sbjct: 799 SQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPGLIGSQD 852
Score = 94 (38.1 bits), Expect = 9.4e-48, Sum P(6) = 9.4e-48
Identities = 34/93 (36%), Positives = 44/93 (47%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD----VVLTTYSI 442
TL+V P S+L QW+ E K + + +Y+GG+ + L K VVLTTY I
Sbjct: 588 TLIVVPMSLLTQWSNEFT-KANNSPDMYHEVYYGGNVSSLKTLLTKTKTPPTVVLTTYGI 646
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFSVN 475
V NE K DE + GL FSVN
Sbjct: 647 VQNEWTKHSK--GRMTDEDVNISSGL---FSVN 674
Score = 90 (36.7 bits), Expect = 9.4e-48, Sum P(6) = 9.4e-48
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 686 CCVCSDPPED---SVVTMCGHVFCYQCASEYIT--GDDNM-CPAPRCKEQLGA 732
C +C+ P D ++ T CGH FC +C EYI N+ P C+ Q+ A
Sbjct: 914 CSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCPNCRNQIDA 966
Score = 67 (28.6 bits), Expect = 9.4e-48, Sum P(6) = 9.4e-48
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
A ++L Q V + DG+ L + +LA + K GGIL+D+ GLGKT++
Sbjct: 488 AAQNLQQDHVN--VEDGIFFYANLHSGEFSLAKPILKTMIK----GGILSDEMGLGKTVA 541
Query: 313 IIALI 317
+L+
Sbjct: 542 AYSLV 546
Score = 64 (27.6 bits), Expect = 9.4e-48, Sum P(6) = 9.4e-48
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK 540
L V ++R+++DE I+N T ++A +L+ K
Sbjct: 670 LFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGK 703
Score = 53 (23.7 bits), Expect = 2.5e-46, Sum P(6) = 2.5e-46
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 247 RLIYQAALEDLNQPKVEATLPD-GLLSVNLLKHQKIALAWMLQKE 290
+ Y+AA + + T P + + L +QK L WML++E
Sbjct: 408 KTFYKAAQSSESLKSLPETEPSRDVFKLELRNYQKQGLTWMLRRE 452
Score = 44 (20.5 bits), Expect = 2.1e-45, Sum P(6) = 2.1e-45
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 223 QFGGPSDLAYRSGSADERAVGGDERLIYQAALED----LNQPKVEATLPDGLLS 272
QF P+D+++ + + + V ++ + + A L L +P ++ + G+LS
Sbjct: 478 QFKWPNDMSWAAQNLQQDHVNVEDGIFFYANLHSGEFSLAKPILKTMIKGGILS 531
Score = 37 (18.1 bits), Expect = 1.6e-26, Sum P(4) = 1.6e-26
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 586 PKTISLTKVDFSKEEWAFYKK 606
P T+ LT + EW + K
Sbjct: 636 PPTVVLTTYGIVQNEWTKHSK 656
>GENEDB_PFALCIPARUM|MAL13P1.216 [details] [associations]
symbol:MAL13P1.216 "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HSSP:P38398 EMBL:AL844509 KO:K15505 RefSeq:XP_001350155.1
ProteinModelPortal:Q8IDQ5 EnsemblProtists:MAL13P1.216:mRNA
GeneID:813773 KEGG:pfa:MAL13P1.216 EuPathDB:PlasmoDB:PF3D7_1343400
HOGENOM:HOG000283331 ProtClustDB:CLSZ2433454 Uniprot:Q8IDQ5
Length = 1446
Score = 208 (78.3 bits), Expect = 1.8e-46, Sum P(6) = 1.8e-46
Identities = 37/72 (51%), Positives = 51/72 (70%)
Query: 871 VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 930
V+L SLKAG +GLN+ +S V L+DLWWNP EDQA +R HRIGQ + V + + + TV
Sbjct: 1334 VLLCSLKAGGVGLNLTVSSKVYLMDLWWNPAIEDQAFERVHRIGQLKEVNIYKFVLEKTV 1393
Query: 931 EDRILKLQDDKR 942
E+RIL++ K+
Sbjct: 1394 EERILQIHQSKQ 1405
Score = 180 (68.4 bits), Expect = 1.8e-46, Sum P(6) = 1.8e-46
Identities = 41/103 (39%), Positives = 63/103 (61%)
Query: 548 ISRNSLH-GYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLTKVDFSKEEWAFYK 605
+++N L+ ++ + I+LRRTK + +G II+LP K I L K++FS EE FY+
Sbjct: 952 VNKNKLNLALDVVRKISSPILLRRTKKSKTKNGNSIISLPKKNIHLEKLEFSLEEEDFYR 1011
Query: 606 KLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+ S KF + G V +Y+++L +LLRLRQ C HPLL+
Sbjct: 1012 AIFYRSKTKFDTYMHDGNVLSHYSHVLQLLLRLRQCCSHPLLL 1054
Score = 144 (55.7 bits), Expect = 1.8e-46, Sum P(6) = 1.8e-46
Identities = 49/175 (28%), Positives = 76/175 (43%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTLV+ P +++ QW E+E + ++ IY+G S+ EL+ Y VVLTTYS + +
Sbjct: 738 GTLVIAPLALIYQWKEEIERHTKE-GFVTCYIYYGTSKDISSEELSGYSVVLTTYSTLVS 796
Query: 446 EVPKQPSVD-EEEADEKNGETYGLSSEF----SVNKKRKKIXXXXXXXXXXXXXXXXXXI 500
E + +A+ N TY F S + +KK+ I
Sbjct: 797 EYKNTLNKKFSNKAENNNNSTYTNKESFFKDVSSSTTKKKMNNFFMKTVLNSGNKNNDNI 856
Query: 501 ---D--------YGCG--PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRS 542
D Y PL + W R+++DEA IKN + + A LR +R+
Sbjct: 857 FFFDKKKTNTMLYNMKEYPLYNITWRRIIIDEAHVIKNKNSIQSVAVWKLRGERN 911
Score = 86 (35.3 bits), Expect = 1.8e-46, Sum P(6) = 1.8e-46
Identities = 30/112 (26%), Positives = 50/112 (44%)
Query: 686 CCVCSDPPEDSVVTMCGHVFCYQCASEY--ITG-DDNMCPAPRCKEQLGADVVFSKTTLK 742
CC+C + +++ C H+ C +CA +Y +T D CP +C D S +LK
Sbjct: 1166 CCICLEDATYPLISKCLHIMCKKCADDYFHLTQIADKKCP--QC------DNYISLKSLK 1217
Query: 743 NCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIV 794
+ SP D K DN S+K++ + + H Q ++ + IV
Sbjct: 1218 TLQENK---SPLDELL--KKMKKDNFVYSTKLKKLFE--HVQNDMQNELHIV 1262
Score = 82 (33.9 bits), Expect = 1.8e-46, Sum P(6) = 1.8e-46
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 809 HSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR 867
H ++ ++ + +VFSQW L ++E LN + I + DG+++ R + FN +
Sbjct: 1250 HVQNDMQNELHIVVFSQWIGFLKIIEKLLNLYNIANKIYDGSLTFEQRKATLNWFNIQK 1308
Score = 73 (30.8 bits), Expect = 1.8e-46, Sum P(6) = 1.8e-46
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 298 GGILADDQGLGKTISIIALIQ---MQRSLQSKSKTEVLGNQK 336
GGILAD+ GLGKTI I LI L SK+ L N+K
Sbjct: 680 GGILADEMGLGKTIQSIGLITHDIYHNKLYSKNNN--LENKK 719
Score = 41 (19.5 bits), Expect = 8.0e-33, Sum P(5) = 8.0e-33
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 148 HSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVK-------KNDDDI 200
++LN K + EN N+S + + + ST K + ++++K KN+D+I
Sbjct: 800 NTLNKKFSNKAENNNNSTYTNK-ESFFKDVSSSTTKKK--MNNFFMKTVLNSGNKNNDNI 856
Query: 201 MMYE 204
++
Sbjct: 857 FFFD 860
Score = 39 (18.8 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 26/102 (25%), Positives = 43/102 (42%)
Query: 107 NKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQI 166
NK + + VN N+A KISS L+RT + TK+ +S+ ++ I
Sbjct: 945 NKEI--VDYVNKNKLNLALDVVRKISSPILLRRTKKS-------KTKNGNSIISLPKKNI 995
Query: 167 RDTFGNAYHLAGPS-TVNSKGYIRD-YYVKKNDDDIMMYEGN 206
HL ++ + + R +Y K D M++GN
Sbjct: 996 --------HLEKLEFSLEEEDFYRAIFYRSKTKFDTYMHDGN 1029
Score = 38 (18.4 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 605 KKLESDSLKKFKAFADAGTVNQNY 628
KK S++ KK A ++ G QNY
Sbjct: 187 KKKVSNNKKKNSASSNDGYNEQNY 210
Score = 37 (18.1 bits), Expect = 2.0e-32, Sum P(5) = 2.0e-32
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 452 SVDEEEADEKNGETYGL 468
S+ E E +EKN E L
Sbjct: 415 SLSENEIEEKNEEATNL 431
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 287 (106.1 bits), Expect = 1.1e-42, Sum P(7) = 1.1e-42
Identities = 59/170 (34%), Positives = 108/170 (63%)
Query: 807 AVHSKSPIEGPIKSIVFSQWTRMLDLVENSL---NQHCIQYRRLDGTMSLPARDRAVKDF 863
A+HS+SP K IVFSQ++ LD++++ L ++ I ++ DG +++ R + ++ F
Sbjct: 920 ALHSQSPNS---KVIVFSQFSSYLDIIQSELKLASEEFIVFK-FDGRLNMNDRTKLLESF 975
Query: 864 NT---DREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVT 920
N D ++ ++L+SLKAG +GLN+ AS ++D WW+P+ EDQA+DR HRIGQ V
Sbjct: 976 NQPLEDGKVAILLLSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDRIHRIGQNETVK 1035
Query: 921 VTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
V R + +++E ++LK+Q+ K+++ + E++ + +E+++ LF
Sbjct: 1036 VVRFIMENSIETKMLKIQERKKQIGEAVAAEEE---ERRKRRIEEIQILF 1082
Score = 137 (53.3 bits), Expect = 1.1e-42, Sum P(7) = 1.1e-42
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF 618
++++L I LRRTK +G+P++ LP K + + ++ F+ +E Y+ + + F
Sbjct: 671 VKSILEPIFLRRTKSQKKNGKPLVELPAKEVVIEQIKFNDDEEKLYQWFKDRAYASFAEG 730
Query: 619 ADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+G + + Y IL +LRLRQ C H L+
Sbjct: 731 IKSGQLLRRYTQILTHILRLRQVCCHVDLI 760
Score = 83 (34.3 bits), Expect = 1.1e-42, Sum P(7) = 1.1e-42
Identities = 30/134 (22%), Positives = 60/134 (44%)
Query: 669 RDMLIDLLSRLETSSAICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGD-----DNM 720
++ + +L +++ + C +C+ P + VVT C H FC C E++ + +
Sbjct: 800 KEKMYNLYGKIKEENE-CSICTQVPIPYSEMVVTPCAHTFCLSCILEHLDFQKELKKEKL 858
Query: 721 CPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSP-FADKSGILDNEYISSKIRTV-- 777
CP C+ + +F ++ + D+P ++ + + D SSKI+ +
Sbjct: 859 CP--NCRSPISKYQLFRIRNQPTKGNEIRFHTQKDAPDYSFQLYLYDPNRSSSKIQALVR 916
Query: 778 -LDILHTQCELNTK 790
L LH+Q N+K
Sbjct: 917 HLKALHSQSP-NSK 929
Score = 76 (31.8 bits), Expect = 1.1e-42, Sum P(7) = 1.1e-42
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALI 317
L+K GGILAD+ GLGKTI+ +AL+
Sbjct: 447 LEKPVIKSSLRGGILADEMGLGKTIATLALV 477
Score = 74 (31.1 bits), Expect = 1.1e-42, Sum P(7) = 1.1e-42
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 505 GPLAKVG-----WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI 544
G L KVG +FR++LDE I+N T+ A++ L++ R I
Sbjct: 576 GELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSRKWI 620
Score = 62 (26.9 bits), Expect = 1.1e-42, Sum P(7) = 1.1e-42
Identities = 22/66 (33%), Positives = 28/66 (42%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD------VVLTTY 440
TL+V P S+L QW E E + + L Y T L D V++TTY
Sbjct: 499 TLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLCNPDNSKIPIVMITTY 558
Query: 441 SIVTNE 446
V NE
Sbjct: 559 GTVLNE 564
Score = 49 (22.3 bits), Expect = 6.0e-40, Sum P(7) = 6.0e-40
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQ 305
T P +++L +QK L+WML +E + L L + +D+
Sbjct: 354 TPPKENFALDLRSYQKHGLSWMLARE-KELDVLEMLSNEDK 393
Score = 46 (21.3 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 641 ACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRL 679
A ++P+ +K+ +FD + E A RL + + +L RL
Sbjct: 256 ATENPIDLKKSNFDYSKESESEAALRLRQFAISNLFDRL 294
Score = 42 (19.8 bits), Expect = 5.7e-24, Sum P(3) = 5.7e-24
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 561 AVLRAIMLRRTKGTFIDGQP-IINLP--------PKTISLTK--VDFSKEEWAFYKKLES 609
AV A +L TK G +I + K + T+ +D K + + K+ ES
Sbjct: 217 AVFEASVLEETKSRLSTGDSFVIEIEVYLTNSSFAKNLDATENPIDLKKSNFDYSKESES 276
Query: 610 DSLKKFKAFA 619
++ + + FA
Sbjct: 277 EAALRLRQFA 286
Score = 38 (18.4 bits), Expect = 5.5e-29, Sum P(6) = 5.5e-29
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 568 LRRTKGTFIDGQPIINLPPKTISLTK 593
L+ ++ + G PI+N SLTK
Sbjct: 613 LQSSRKWILTGTPIVNRLDDLYSLTK 638
Score = 37 (18.1 bits), Expect = 1.1e-42, Sum P(7) = 1.1e-42
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 103 YLSGNKNVGQLQ-TVNPRIANVASADYEKISSQQALKR 139
YL+ + L T NP ++ DY K S +A R
Sbjct: 244 YLTNSSFAKNLDATENPIDLKKSNFDYSKESESEAALR 281
>ASPGD|ASPL0000008250 [details] [associations]
symbol:AN10794 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:BN001301 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EnsemblFungi:CADANIAT00006774
OMA:LADMMGL Uniprot:C8V1S3
Length = 1170
Score = 333 (122.3 bits), Expect = 3.3e-42, Sum P(4) = 3.3e-42
Identities = 118/411 (28%), Positives = 203/411 (49%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF 618
L+ ++ + LRR K ID P + K + L + + F++K + ++
Sbjct: 745 LRVLVDSFTLRRVKDK-ID-LPARH--DKIVMLEFSESEAQLHEFFRKESNVMMRVIAGE 800
Query: 619 ADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD----------FDSVGKISGEMAKRLP 668
+ + Y +IL ++ LRQ H + + D D++ G A +
Sbjct: 801 DKSKMKGRMYHHILKAMMILRQISAHGKELLDSDERARIKGLSVHDAIDLEEGPSADAVA 860
Query: 669 RDM-LIDLLSRLETSSA-ICCVCS----DP-PEDSVVTMCGHVFCYQCASEYITGDDNMC 721
D ++ + ++ SSA +C +CS +P P+ + ++ G V + + D +C
Sbjct: 861 TDKKAYEMFTLMQESSADMCAICSKRLEEPNPDANGSSVPGKV---DIIAFILPCFDVLC 917
Query: 722 PAPRC---KEQLGADVVFSKTTLK-NCVSDDGGGSPTDSPFADKSGILDN--EYISSK-I 774
P C ++Q+ + V + + C +G S + S +G+ D E K
Sbjct: 918 P--ECFSGRKQVFNNRVGDQDSFDVKCDVCEGWISASYSAIT-AAGLQDYLMEQAREKQT 974
Query: 775 RTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVE 834
R +L +TK + H LA + S+ + E PIKS+VFS WT LDL+E
Sbjct: 975 RKQAKVLGEYEGPHTKTKALLSHLLATAEESAKLPEG---EAPIKSVVFSAWTSHLDLIE 1031
Query: 835 NSL-NQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL 893
+L +Q Y RLDGTMSLPAR++A+ +F D T++L ++ AG +GLN+ AASHV +
Sbjct: 1032 IALRDQGLTGYTRLDGTMSLPARNKALDNFRDDNNTTILLATIGAGGVGLNLTAASHVYI 1091
Query: 894 LDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKM 944
++ +NP QA+DR HR+GQTR VT + ++D++E++I +L K+++
Sbjct: 1092 MEPQYNPAAVAQAIDRVHRLGQTREVTTVQFIMKDSIEEKIAELAKKKQQL 1142
Score = 140 (54.3 bits), Expect = 3.3e-42, Sum P(4) = 3.3e-42
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL+V P S + W ++++ + D AL+ ++HG SRT EL+KYD+V+TTYSIV +E
Sbjct: 586 TLLVAPLSTVNNWVSQVKEHLRD-GALTSYVFHGSSRTTSVDELSKYDLVITTYSIVLSE 644
Query: 447 V 447
+
Sbjct: 645 L 645
Score = 81 (33.6 bits), Expect = 3.3e-42, Sum P(4) = 3.3e-42
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSL 553
G PL K+ FR+VLDEA TI+ +A L A+R S PI +N L
Sbjct: 654 GSSPLTKMNMFRIVLDEAHTIREQSAAQTQAIFRLNAQRRWSVTGTPI-QNRL 705
Score = 77 (32.2 bits), Expect = 3.3e-42, Sum P(4) = 3.3e-42
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
K++++ +L +E LGG+LAD GLGKT+SI++L+
Sbjct: 516 KYREVISGIVLDQEPPQ--SLGGLLADMMGLGKTLSILSLV 554
Score = 59 (25.8 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 228 SDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWML 287
S + Y SA+E ++ Q D N P+++ P +++ LL+HQK AL +M
Sbjct: 432 SGVNYEVRSAEE-VTDAVMKMFDQLQSAD-NLPEMD---PPAVVTTPLLRHQKQALWFMT 486
Query: 288 QKE 290
+KE
Sbjct: 487 EKE 489
Score = 37 (18.1 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 446 EVPKQPSVDEEEADEKNGETYGLSSEFSVN 475
++ + PS D D+K E + L E S +
Sbjct: 849 DLEEGPSADAVATDKKAYEMFTLMQESSAD 878
>UNIPROTKB|H7C5K0 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 PROSITE:PS51192 HGNC:HGNC:11099 EMBL:AC021059
ProteinModelPortal:H7C5K0 Ensembl:ENST00000467858 Bgee:H7C5K0
Uniprot:H7C5K0
Length = 425
Score = 254 (94.5 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 56/196 (28%), Positives = 99/196 (50%)
Query: 543 TIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWA 602
TI+ P++ G ++LQ++++ I LRRTK + I G+P++ LP + + + + S EE
Sbjct: 81 TIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERK 140
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGE 662
Y+ ++++ + + GTV +YA++L +LLRLRQ C H L+ S G +
Sbjct: 141 IYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNA-VSSNGPSAFS 199
Query: 663 MAKRLPRDMLIDLLSRLET-----SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD 717
+ P ++ L+ +++ S C +C D V+T C HVFC C + I +
Sbjct: 200 LGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNE 259
Query: 718 DNMCPAPRCKEQLGAD 733
P C+ + D
Sbjct: 260 QPHAKCPLCRNDIHED 275
Score = 230 (86.0 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 50/106 (47%), Positives = 68/106 (64%)
Query: 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDR-EITVMLMS 875
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+ T+ML+S
Sbjct: 320 IKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLS 379
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 921
LKAG +GLN+ AAS V L+D WNP EDQ DR HR+GQ + V +
Sbjct: 380 LKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVII 425
Score = 87 (35.7 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG 555
DYG PL + W RV+LDE I+N Q +A L ++R + PI +NSL
Sbjct: 1 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPI-QNSL-- 57
Query: 556 YKKLQAVLRAIMLR 569
K L ++L + L+
Sbjct: 58 -KDLWSLLSFLKLK 70
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 262 (97.3 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 65/152 (42%), Positives = 87/152 (57%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ+T ML L+E L I Y +L G L R + F + + V L+SLKA
Sbjct: 949 KILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL--RQVQIDKFQ-EGDTPVFLISLKA 1005
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G GLN+ AA VI D WWNP E QA DRAHRIGQ PV V +L TVE++I ++Q
Sbjct: 1006 GGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQEMQ 1065
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
K+ + S E +G G A + + ++L LF
Sbjct: 1066 QHKQGLADSIL-EGKGNG-AWQGSADELLSLF 1095
Score = 105 (42.0 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
P +L++CP S++ WA+E P +L++ + HG R L+++DVV+TTY +
Sbjct: 683 PHLPSLIICPTSLVGNWAKEAAKFAP---SLTLAVIHGAQRGPLLARLSEFDVVVTTYPL 739
Query: 443 VTNE 446
+ +
Sbjct: 740 MVRD 743
Score = 105 (42.0 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 36/111 (32%), Positives = 53/111 (47%)
Query: 216 GKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
G S+++ ++ + L +D + G+ A LE V T P L L
Sbjct: 577 GNSIALPKYR--AHLLNELAQSDISLLNGERVRQLAAKLEQFTGV-VAVTAPTQL-QAEL 632
Query: 276 LKHQKIALAWM-LQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 325
+Q+ L W+ KE + LGGILADD GLGKTI +A + Q+ L+S
Sbjct: 633 RPYQQQGLNWLCFLKEYQ----LGGILADDMGLGKTIQTLAFLLKQKQLKS 679
Score = 104 (41.7 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
K L + +LRRTK + + LPPKT ++ K++ Y+ + KK +
Sbjct: 833 KVLSQRIAPFVLRRTKA-----EVVTELPPKTEIYQSLELEKDQRNLYESIRLSMEKKIR 887
Query: 617 A-FADAGTVNQNYANILLMLLRLRQACDHPLLVK 649
FA G ++ L LL+LRQAC P LVK
Sbjct: 888 ELFATQGVAG-SHIEFLDALLKLRQACCDPRLVK 920
Score = 57 (25.1 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSLHGY 556
+VLDEAQ IKN + +V++ ++A +S K+ ++ L +
Sbjct: 755 IVLDEAQQIKNAQAKVSQM---IKALQSPFKLCLTGTPLENH 793
Score = 37 (18.1 bits), Expect = 2.9e-24, Sum P(4) = 2.9e-24
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 396 LRQWARELEDKVPDKAALSV 415
+R+W + +E+ VP A V
Sbjct: 461 IREWLQFIEEDVPRLQAQGV 480
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 262 (97.3 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 65/152 (42%), Positives = 87/152 (57%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ+T ML L+E L I Y +L G L R + F + + V L+SLKA
Sbjct: 949 KILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL--RQVQIDKFQ-EGDTPVFLISLKA 1005
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G GLN+ AA VI D WWNP E QA DRAHRIGQ PV V +L TVE++I ++Q
Sbjct: 1006 GGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQEMQ 1065
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
K+ + S E +G G A + + ++L LF
Sbjct: 1066 QHKQGLADSIL-EGKGNG-AWQGSADELLSLF 1095
Score = 105 (42.0 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
P +L++CP S++ WA+E P +L++ + HG R L+++DVV+TTY +
Sbjct: 683 PHLPSLIICPTSLVGNWAKEAAKFAP---SLTLAVIHGAQRGPLLARLSEFDVVVTTYPL 739
Query: 443 VTNE 446
+ +
Sbjct: 740 MVRD 743
Score = 105 (42.0 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 36/111 (32%), Positives = 53/111 (47%)
Query: 216 GKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
G S+++ ++ + L +D + G+ A LE V T P L L
Sbjct: 577 GNSIALPKYR--AHLLNELAQSDISLLNGERVRQLAAKLEQFTGV-VAVTAPTQL-QAEL 632
Query: 276 LKHQKIALAWM-LQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 325
+Q+ L W+ KE + LGGILADD GLGKTI +A + Q+ L+S
Sbjct: 633 RPYQQQGLNWLCFLKEYQ----LGGILADDMGLGKTIQTLAFLLKQKQLKS 679
Score = 104 (41.7 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
K L + +LRRTK + + LPPKT ++ K++ Y+ + KK +
Sbjct: 833 KVLSQRIAPFVLRRTKA-----EVVTELPPKTEIYQSLELEKDQRNLYESIRLSMEKKIR 887
Query: 617 A-FADAGTVNQNYANILLMLLRLRQACDHPLLVK 649
FA G ++ L LL+LRQAC P LVK
Sbjct: 888 ELFATQGVAG-SHIEFLDALLKLRQACCDPRLVK 920
Score = 57 (25.1 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSLHGY 556
+VLDEAQ IKN + +V++ ++A +S K+ ++ L +
Sbjct: 755 IVLDEAQQIKNAQAKVSQM---IKALQSPFKLCLTGTPLENH 793
Score = 37 (18.1 bits), Expect = 2.9e-24, Sum P(4) = 2.9e-24
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 396 LRQWARELEDKVPDKAALSV 415
+R+W + +E+ VP A V
Sbjct: 461 IREWLQFIEEDVPRLQAQGV 480
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 276 (102.2 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 68/186 (36%), Positives = 106/186 (56%)
Query: 775 RTVLDILHTQCELNTKCSIVEIHDLAGS---NGSSAVH---SKSP--IEGPIKSIVFSQW 826
R+ +++L +L C+ ++ L G+ N S+ + P I+ K ++FSQ+
Sbjct: 931 RSQIEVLDALLKLRQVCNHPKLLKLEGAKKVNQSAKLDYLMETLPEQIDEGRKILIFSQF 990
Query: 827 TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV 886
T ML L+E+ L I Y +L G S R V F E+ V L+SL+AG +GLN+
Sbjct: 991 TSMLSLIEDELIDAGIGYVKLTG--STTKRQEVVDKFQRG-EVPVFLISLRAGGVGLNLT 1047
Query: 887 AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVA 946
AA VI D WWNP E+QA DRA+RIGQ +PV V +L I +++E++I K+Q +K ++
Sbjct: 1048 AADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQKIQQNKAELAK 1107
Query: 947 SAFGED 952
+ E+
Sbjct: 1108 ALLSEE 1113
Score = 109 (43.4 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 39/122 (31%), Positives = 62/122 (50%)
Query: 209 LPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVG-GDERLIYQA-ALEDLNQPKVEATL 266
+P++L H ++ +++F G L+ D+ + G +L A L+D Q +
Sbjct: 599 MPNALSHDGTIELSRFQGHQTLSMLD---DQGMIAKGTSKLRALADKLKDFQQVTT-IPV 654
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA--LIQMQRSLQ 324
P+GL + L +Q L W+ + R L GILADD GLGKTI +A LI+ Q+
Sbjct: 655 PEGL-NATLRTYQHQGLNWL--QFLREYQ-LNGILADDMGLGKTIQTLAHLLIEKQQGRL 710
Query: 325 SK 326
+K
Sbjct: 711 TK 712
Score = 99 (39.9 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 34/108 (31%), Positives = 53/108 (49%)
Query: 545 KIPISRNS-LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT--ISLTKVDFSKEEW 601
+ PI ++ L + L ++ +LRRTK LPPKT I +++ + E
Sbjct: 854 RTPIEKHGELERKQLLNQRIKPFILRRTKDKIAT-----ELPPKTEIIQTLRIEGKQAEL 908
Query: 602 AFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 649
+L DS K AD G + ++ +L LL+LRQ C+HP L+K
Sbjct: 909 YESVRLAMDSRLK-DIIADKG-LKRSQIEVLDALLKLRQVCNHPKLLK 954
Score = 83 (34.3 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAK--YDVVLTTY 440
L+V P SV+ WA E++ P LS + HG R + + VE + D+++T+Y
Sbjct: 715 LIVAPTSVIFNWANEIDKFTPQ---LSYQVLHGNKRHEQFGCLEGVENGENQVDIIITSY 771
Query: 441 SIVTNEV 447
+++T ++
Sbjct: 772 ALITKDL 778
Score = 58 (25.5 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAK 540
++ +VLDEA IKN +T++ +A +L+A+
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQ 814
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 276 (102.2 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 68/186 (36%), Positives = 106/186 (56%)
Query: 775 RTVLDILHTQCELNTKCSIVEIHDLAGS---NGSSAVH---SKSP--IEGPIKSIVFSQW 826
R+ +++L +L C+ ++ L G+ N S+ + P I+ K ++FSQ+
Sbjct: 931 RSQIEVLDALLKLRQVCNHPKLLKLEGAKKVNQSAKLDYLMETLPEQIDEGRKILIFSQF 990
Query: 827 TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV 886
T ML L+E+ L I Y +L G S R V F E+ V L+SL+AG +GLN+
Sbjct: 991 TSMLSLIEDELIDAGIGYVKLTG--STTKRQEVVDKFQRG-EVPVFLISLRAGGVGLNLT 1047
Query: 887 AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVA 946
AA VI D WWNP E+QA DRA+RIGQ +PV V +L I +++E++I K+Q +K ++
Sbjct: 1048 AADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQKIQQNKAELAK 1107
Query: 947 SAFGED 952
+ E+
Sbjct: 1108 ALLSEE 1113
Score = 109 (43.4 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 39/122 (31%), Positives = 62/122 (50%)
Query: 209 LPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVG-GDERLIYQA-ALEDLNQPKVEATL 266
+P++L H ++ +++F G L+ D+ + G +L A L+D Q +
Sbjct: 599 MPNALSHDGTIELSRFQGHQTLSMLD---DQGMIAKGTSKLRALADKLKDFQQVTT-IPV 654
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA--LIQMQRSLQ 324
P+GL + L +Q L W+ + R L GILADD GLGKTI +A LI+ Q+
Sbjct: 655 PEGL-NATLRTYQHQGLNWL--QFLREYQ-LNGILADDMGLGKTIQTLAHLLIEKQQGRL 710
Query: 325 SK 326
+K
Sbjct: 711 TK 712
Score = 99 (39.9 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 34/108 (31%), Positives = 53/108 (49%)
Query: 545 KIPISRNS-LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT--ISLTKVDFSKEEW 601
+ PI ++ L + L ++ +LRRTK LPPKT I +++ + E
Sbjct: 854 RTPIEKHGELERKQLLNQRIKPFILRRTKDKIAT-----ELPPKTEIIQTLRIEGKQAEL 908
Query: 602 AFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 649
+L DS K AD G + ++ +L LL+LRQ C+HP L+K
Sbjct: 909 YESVRLAMDSRLK-DIIADKG-LKRSQIEVLDALLKLRQVCNHPKLLK 954
Score = 83 (34.3 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAK--YDVVLTTY 440
L+V P SV+ WA E++ P LS + HG R + + VE + D+++T+Y
Sbjct: 715 LIVAPTSVIFNWANEIDKFTPQ---LSYQVLHGNKRHEQFGCLEGVENGENQVDIIITSY 771
Query: 441 SIVTNEV 447
+++T ++
Sbjct: 772 ALITKDL 778
Score = 58 (25.5 bits), Expect = 6.4e-37, Sum P(5) = 6.4e-37
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAK 540
++ +VLDEA IKN +T++ +A +L+A+
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQ 814
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 289 (106.8 bits), Expect = 2.0e-36, Sum P(5) = 2.0e-36
Identities = 60/152 (39%), Positives = 89/152 (58%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T+ML ++ LN+ I Y LDG R FN + E + L+SLKAG
Sbjct: 916 LIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFN-EGEGDLFLISLKAGG 974
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
GLN+ A VIL DLWWNP E QA DRA+R+GQ V V +L T+E+++ +LQ+
Sbjct: 975 TGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGTIEEKMHELQES 1034
Query: 941 KRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972
K+ ++A + G S +T E++R + M+
Sbjct: 1035 KKNLIAEVI--EPGEEKLSSITEEEIRDILMI 1064
Score = 113 (44.8 bits), Expect = 2.0e-36, Sum P(5) = 2.0e-36
Identities = 35/124 (28%), Positives = 62/124 (50%)
Query: 195 KNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAAL 254
K ++I + + +HG+ V++ + + +G + + DE + Q +
Sbjct: 538 KEFNEINQFVKESGIRKEFLHGEEVNVPLI---RSVKWMNGLHEGNVLSLDESV--QDLV 592
Query: 255 EDLNQPK-VEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
E + PK ++ T+P L +V + ++Q WM +T + + GGILADD GLGKT+
Sbjct: 593 ESIQNPKKLKFTVPQTLRAV-MREYQVYGFEWM---KTLAYYRFGGILADDMGLGKTLQS 648
Query: 314 IALI 317
IA I
Sbjct: 649 IAYI 652
Score = 78 (32.5 bits), Expect = 2.0e-36, Sum P(5) = 2.0e-36
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447
LVV P+S++ W EL+ P A+ + + R K ++A++DVV+T+Y ++ ++
Sbjct: 667 LVVSPSSLVYNWLSELKKFAPHIRAV-IADGNQAERRKILKDVAEFDVVITSYPLLRRDI 725
Score = 77 (32.2 bits), Expect = 2.0e-36, Sum P(5) = 2.0e-36
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 602 AFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP-LLVKEY 651
A+ KL ++LK D T+ +N IL L RLRQ C HP L V +Y
Sbjct: 845 AYLAKLREETLKHL----DKDTLRKNKIRILAGLTRLRQICCHPALFVDDY 891
Score = 60 (26.2 bits), Expect = 2.0e-36, Sum P(5) = 2.0e-36
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 517 LDEAQTIKNHRTQVARACCSLRAK 540
LDEAQ KN TQ ARA +++A+
Sbjct: 737 LDEAQAFKNPTTQTARAVKTIQAE 760
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 231 (86.4 bits), Expect = 8.5e-34, Sum P(5) = 8.5e-34
Identities = 60/160 (37%), Positives = 86/160 (53%)
Query: 815 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRR----LDGTMSLPARDRAVKDFNTDREIT 870
EG + + F+Q+T +L+ L + R L G RD V F +
Sbjct: 848 EGD-RVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQSGDGPP 906
Query: 871 VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 930
+ L+SLKAG GLN+ AA+HV+ LD WWNP E+QA DRA RIGQ R V V + T+
Sbjct: 907 IFLLSLKAGGTGLNLTAANHVVHLDRWWNPAVENQATDRAFRIGQRRTVQVRKFICTGTL 966
Query: 931 EDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
E++I ++ ++K K +A D G G + L+ DLR +F
Sbjct: 967 EEKIDEMIEEK-KALADLVVTD-GEGWLTELSTRDLREVF 1004
Score = 105 (42.0 bits), Expect = 8.5e-34, Sum P(5) = 8.5e-34
Identities = 42/150 (28%), Positives = 75/150 (50%)
Query: 541 RSTIKIPISRNSLHGY----KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDF 596
R+ IPI R HG+ ++L+A R +LRR K D I +LP K
Sbjct: 720 RTRYAIPIER---HGHTEPAERLRASTRPYILRRLK---TDPAIIDDLPEKIEIKQYCQL 773
Query: 597 SKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSV 656
+ E+ + Y+ + +D ++K + G + N+L + +L+Q C+HP + +D V
Sbjct: 774 TTEQASLYQAVVADMMEKIEN--TEGI--ERRGNVLAAMAKLKQVCNHPAQLL-HDRSPV 828
Query: 657 GKISGEMAKRLPRDMLIDLLSRLETSSAIC 686
G+ SG++ RL ++L ++L+ E +C
Sbjct: 829 GRRSGKVI-RL-EEILEEILA--EGDRVLC 854
Score = 89 (36.4 bits), Expect = 8.5e-34, Sum P(5) = 8.5e-34
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQ 324
PDG + L +Q+ LAW+ + L G LADD GLGKT+ ++AL ++ S+Q
Sbjct: 526 PDGF-TATLRPYQQRGLAWLAFLSSLGL---GSCLADDMGLGKTVQLLALETLE-SVQ 578
Score = 88 (36.0 bits), Expect = 8.5e-34, Sum P(5) = 8.5e-34
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV---ELAKYDVVLTTYSIV 443
TL++CP S++ W +E P+ L V +HGG+R L + D+V++TY+
Sbjct: 588 TLLLCPMSLVGNWPQEAARFAPN---LRVYAHHGGARLHGEALRDHLERTDLVVSTYTTA 644
Query: 444 TNEV 447
T ++
Sbjct: 645 TRDI 648
Score = 82 (33.9 bits), Expect = 8.5e-34, Sum P(5) = 8.5e-34
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA 539
LA+ W RVVLDEAQ +KN ++ A+A LRA
Sbjct: 651 LAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRA 683
>UNIPROTKB|G4NIT2 [details] [associations]
symbol:MGG_12155 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:CM001236 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003719705.1 ProteinModelPortal:G4NIT2
EnsemblFungi:MGG_12155T0 GeneID:2677543 KEGG:mgr:MGG_12155
Uniprot:G4NIT2
Length = 1430
Score = 229 (85.7 bits), Expect = 2.1e-33, Sum P(5) = 2.1e-33
Identities = 51/154 (33%), Positives = 82/154 (53%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT---DREITVMLMS 875
K I+F+ W + ++ I++ G+M + R AV+ F T +++ S
Sbjct: 1080 KIIIFTHWVPLARILGRVFEAEKIRFLYYFGSMGMGQRKTAVEKFTTIIGPLAPKLLIAS 1139
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
+ G LN+ AA+ VIL+DLWWN E QA R HRIGQT+ ++ R T+++R+L
Sbjct: 1140 SRCGGQALNLTAANRVILVDLWWNTAVERQAFGRVHRIGQTKDTYYVKIVTRKTIDERLL 1199
Query: 936 KLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYL 969
+QD+K +++ +D G LT D+RYL
Sbjct: 1200 DMQDEKDAKISNTL-QD-GEHKVKPLTHADIRYL 1231
Score = 119 (46.9 bits), Expect = 2.1e-33, Sum P(5) = 2.1e-33
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 558 KLQAVLRAIMLRR-TKGTFIDGQPIINLPPK-TISLTKVDFSKEEWAFYKKLESDSLKKF 615
+L AV+ ++M+RR TF+ GQPI+ +PP + V+ S EE Y +LE
Sbjct: 747 RLAAVVPSLMIRRRVHDTFM-GQPILRIPPTHPVKTISVELSTEEKLIYHRLEDRFRDNL 805
Query: 616 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ G ++ L RLRQ HP L++
Sbjct: 806 NSHIKEGVSSKKLRTYFTYLTRLRQCTSHPFLLE 839
Score = 98 (39.6 bits), Expect = 2.8e-31, Sum P(5) = 2.8e-31
Identities = 29/75 (38%), Positives = 39/75 (52%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAK-RSTIK-IPISRN--SLHGYKKLQAVLRA 565
V W RVVLDEA IKNH ++ ++AC LR+K R + PI L+ Y + V A
Sbjct: 665 VDWHRVVLDEAHAIKNHLSRTSKACVHLRSKHRWALSGTPIHNTIEELYPYMRFLRVEWA 724
Query: 566 IMLRRTKGTFIDGQP 580
++ K F G P
Sbjct: 725 ADMKDFKKKF-GGTP 738
Score = 95 (38.5 bits), Expect = 2.1e-33, Sum P(5) = 2.1e-33
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA 315
L HQ + + +ML KE L GGILAD GLGKT+ ++A
Sbjct: 523 LFNHQLVGVHFMLGKEFSPLGPYGGILADQMGLGKTVQMLA 563
Score = 84 (34.6 bits), Expect = 2.1e-33, Sum P(5) = 2.1e-33
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 685 ICCVCSDPPEDSVVTM-CGHVFCYQCASEYITGDDNMCPAPRC 726
IC C++ P+DS +T CGH FC C + + P+C
Sbjct: 928 ICRSCTELPQDSQITEPCGHTFCRDCIEPIVHNAEASNQEPKC 970
Score = 74 (31.1 bits), Expect = 2.1e-33, Sum P(5) = 2.1e-33
Identities = 23/84 (27%), Positives = 35/84 (41%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL+V PA+ + QW EL+ A + Y + + P L K VV+ +Y +
Sbjct: 574 TLIVAPAAAIEQWKSELKKHCT--FAKRIWHYSDKNENQIPEVLKKEKVVIASYQAIAKA 631
Query: 447 VPKQPSVDEEEADEKNGETYGLSS 470
P +E NG GL +
Sbjct: 632 FPS-----DEALRRINGTKLGLEA 650
Score = 51 (23.0 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 715 TGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDG 749
T D PR +EQ ++ +F+ + C+ DDG
Sbjct: 54 TPDPRAMSRPRTREQ--SEALFTNHLVYECLDDDG 86
Score = 49 (22.3 bits), Expect = 2.1e-25, Sum P(5) = 2.1e-25
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 392 PASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY 433
P S W RE E + D+ A+ L+ GSR DP + A +
Sbjct: 387 PMSAQEWWEREYE-RNSDEDAIPNLLVPNGSR--DPNQTATW 425
Score = 41 (19.5 bits), Expect = 6.3e-28, Sum P(5) = 6.3e-28
Identities = 22/114 (19%), Positives = 47/114 (41%)
Query: 204 EGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGS----ADERAVGGDERLIYQAALEDLN- 258
+G+ L + H +S+ + P AY+ +D+ D + + + D +
Sbjct: 134 KGSGRLKHTRGHDQSMPIDLTQNPETTAYQRADVVFLSDDEEESDDRKSVISVSDGDEDV 193
Query: 259 QPKVEATLPDG-------LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQ 305
+P +E+ PD ++ NL+K + L +K+ GG L+ ++
Sbjct: 194 KPPIESIYPDAERASPAAVVRHNLVKMRNKYLRLTAKKDNLKAKEAGGPLSQEE 247
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 288 (106.4 bits), Expect = 2.8e-32, Sum P(6) = 2.8e-32
Identities = 60/136 (44%), Positives = 84/136 (61%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
++++F+Q T+MLD+ E LN H Y RLDG+ + R + FNTD +I + ++S ++
Sbjct: 1397 RALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLTERFNTDPKIFLFILSTRS 1456
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LGLN+ A VI D WNP+ + QA DR HRIGQTR V + R + T+E+ ILK
Sbjct: 1457 GGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREVNIYRFITQHTIEENILKKS 1516
Query: 939 DDKR---KMVASAFGE 951
+ KR KMV A GE
Sbjct: 1517 NQKRQLDKMVIKA-GE 1531
Score = 98 (39.6 bits), Expect = 2.8e-32, Sum P(6) = 2.8e-32
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
LN V +P LL L ++Q I L W++ ++L+ GILAD+ GLGKTI I+L
Sbjct: 764 LNTSNVRTKVPF-LLKFPLREYQHIGLDWLVSLYEKNLN---GILADEMGLGKTIMTISL 819
Query: 317 I 317
I
Sbjct: 820 I 820
Score = 81 (33.6 bits), Expect = 2.8e-32, Sum P(6) = 2.8e-32
Identities = 24/88 (27%), Positives = 47/88 (53%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L AVLR +LRR K ++ Q +PPK + S+ + Y++ + S ++
Sbjct: 991 RLHAVLRPFLLRRLKKD-VEKQ----MPPKHTHIVPCSMSRRQKFLYEEFINSS--STQS 1043
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHP 645
+G+ + +I+ +L++LR+ C+HP
Sbjct: 1044 TLSSGS----FFSIINILMQLRKVCNHP 1067
Score = 71 (30.1 bits), Expect = 2.8e-32, Sum P(6) = 2.8e-32
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L+V P+SVL W E + P L + YHG SR + + V +T+YS+
Sbjct: 834 LIVVPSSVLFNWEMEFKRWCP---GLKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSM 890
Query: 443 VTNE 446
V ++
Sbjct: 891 VMSD 894
Score = 57 (25.1 bits), Expect = 2.8e-32, Sum P(6) = 2.8e-32
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 512 WFRVVLDEAQTIKNHRTQ 529
W ++LDEA IKN +TQ
Sbjct: 903 WVYMILDEAHVIKNFKTQ 920
Score = 54 (24.1 bits), Expect = 2.8e-32, Sum P(6) = 2.8e-32
Identities = 24/109 (22%), Positives = 48/109 (44%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQAL 137
Q+KLQ++ G ++ SNG + S N + +++ P S+ I ++ +
Sbjct: 212 QDKLQLINGKVEEFCNSNGFSFYSQIFIDNLSSLTSKSLQP---TTTSSKIPTIPVEKPI 268
Query: 138 --KRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNS 184
K TLP P+ L + +S + + +S ++ T P+T +
Sbjct: 269 IEKPTLPERPKSERLK-RQQSLLNSTDSKKLSTTSTTTTTTTTPTTTTA 316
Score = 47 (21.6 bits), Expect = 1.4e-31, Sum P(6) = 1.4e-31
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 79 EKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALK 138
+KL +DD +N + D+++ + N N + I N+ S +K +S Q
Sbjct: 705 KKLDQEKSDNDDDDNNNNEDDNNNNNNNNNNNNENSISTKDIINIVS---KKANSSQPTG 761
Query: 139 RTL 141
TL
Sbjct: 762 FTL 764
Score = 47 (21.6 bits), Expect = 1.9e-07, Sum P(6) = 1.9e-07
Identities = 21/67 (31%), Positives = 29/67 (43%)
Query: 771 SSKIRTVLD-ILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRM 829
SSK R V D I+ T N+ S E+ D AGS S V + + + S+
Sbjct: 2209 SSKKRLVPDDIIVTGGVANSDKSDAELEDFAGSLEESLVSKQGGVPSTTTNSSTSRKKSE 2268
Query: 830 LDLVENS 836
DL + S
Sbjct: 2269 YDLFDAS 2275
Score = 40 (19.1 bits), Expect = 8.6e-07, Sum P(6) = 8.6e-07
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 749 GGGSPTDSPFADKS--GILDN 767
GGGS +SP + S GI N
Sbjct: 2327 GGGSDLESPISSSSISGIFIN 2347
>DICTYBASE|DDB_G0281949 [details] [associations]
symbol:helE "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0281949 Prosite:PS00518 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 EMBL:AAFI02000044 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
ProtClustDB:CLSZ2430494 RefSeq:XP_640427.1
ProteinModelPortal:Q54T24 EnsemblProtists:DDB0215339 GeneID:8623380
KEGG:ddi:DDB_G0281949 InParanoid:Q54T24 OMA:NSFCDKI Uniprot:Q54T24
Length = 1540
Score = 248 (92.4 bits), Expect = 1.9e-31, Sum P(7) = 1.9e-31
Identities = 64/187 (34%), Positives = 103/187 (55%)
Query: 795 EIHDLAGSNGSSAVHSKSPI-EGPIKSIVFSQWTRMLDLVENSL--NQHC--IQYRRLDG 849
EI+ L S + + K+ + +K IVFS WT LDL+E SL N + + R+DG
Sbjct: 1310 EINSLKNSQKNIIANLKNAKGKNQLKGIVFSHWTMFLDLIEESLIANDWIKDVDFCRIDG 1369
Query: 850 TMSLPARDRAVKDF-----NTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTED 904
+ + R+ + F N + +MLMS+ G +GLN+ A+ V L++ W P+ E+
Sbjct: 1370 KLPISKREAIIDSFQAKSNNGNGGPRLMLMSITCGGIGLNLERANIVYLMEPSWTPSIEE 1429
Query: 905 QAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTAS-RLTV 963
QA+ R RIGQTR + V R I+ T+E +LKL D K+ + +D+ + +LTV
Sbjct: 1430 QAIGRVDRIGQTRDIFVKRFIIKKTIEVGMLKLHDAKKNNSNAFLTDDEIELEENPKLTV 1489
Query: 964 EDLRYLF 970
++++ LF
Sbjct: 1490 QEMKSLF 1496
Score = 127 (49.8 bits), Expect = 1.9e-31, Sum P(7) = 1.9e-31
Identities = 51/179 (28%), Positives = 77/179 (43%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKT--EVLGNQKTEXXXXXXXXXXXXXXXXK 355
GG+L D GLGKT+ I++L + S + E+L + K +
Sbjct: 638 GGMLCDKMGLGKTLMILSLSLKNHPIYSSHEIHKEILNDIKPQLIKRRKKYFIGTDSSSD 697
Query: 356 VKETGESDDIKPVPEVXXXXXXXXXXXPAAGTLVVCPASVLRQWARELEDKV-PD-KAAL 413
+ + S K P + TLV+ P SVL+QW +LE + PD L
Sbjct: 698 LSSSSSSSPTK-------------ITLPKS-TLVILPFSVLKQWRNQLELHLQPDFLKKL 743
Query: 414 SVLIYHGGSR---TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLS 469
+++IYHG +R T+D +L K D V TT+ + E S E+E K+ S
Sbjct: 744 NIIIYHGTNRKSITQD--QLIKADFVFTTHQTFSIEY----SFYEKERKNKSSSAISTS 796
Score = 101 (40.6 bits), Expect = 1.9e-31, Sum P(7) = 1.9e-31
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 591 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +++F + E Y + DS + F+ D G +N +Y +L ++LRLR+ CDH L K
Sbjct: 956 IIELEFDQNESDAYSLVFKDSNETFERIQDRGDLNHHYNLVLHLILRLRRCCDHSSLTK 1014
Score = 54 (24.1 bits), Expect = 1.9e-31, Sum P(7) = 1.9e-31
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSL 537
PL + W+RV++DE+ K H++ R+ +L
Sbjct: 843 PLLCIHWWRVIIDESHKFK-HKSLFFRSLQNL 873
Score = 51 (23.0 bits), Expect = 1.9e-31, Sum P(7) = 1.9e-31
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
K+E P+ L S LL+HQK + WM ++E G L++
Sbjct: 563 KIEQ--PEWLRS-KLLEHQKEGIWWMRKRELEPFITNGQTLSE 602
Score = 43 (20.2 bits), Expect = 1.9e-31, Sum P(7) = 1.9e-31
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 677 SRLETSSAICCVCSD--P-P--EDSVVTMCGHVFCYQC 709
S L C C + P P E+ +++ C H++C C
Sbjct: 1018 STLNLGQFFCSSCFEEIPSPHNENLLISDCDHLYCKAC 1055
Score = 41 (19.5 bits), Expect = 6.0e-23, Sum P(7) = 6.0e-23
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSV 474
P+ L DV++TT + T + + ++ N + +SS+F++
Sbjct: 799 PIPLINEDVIITTTTTTTT------TTNNNNSNNNNNQKQ-ISSKFTI 839
Score = 39 (18.8 bits), Expect = 1.9e-31, Sum P(7) = 1.9e-31
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIAN 122
++++ +N +D++Y N N+ L +P N
Sbjct: 272 NNNNNNNNSNNNDNNYNKNNNNIDDLSE-DPNTDN 305
>DICTYBASE|DDB_G0287171 [details] [associations]
symbol:DDB_G0287171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 dictyBase:DDB_G0287171
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000098 KO:K15710 RefSeq:XP_637376.1
ProteinModelPortal:Q54KQ4 EnsemblProtists:DDB0233435 GeneID:8625998
KEGG:ddi:DDB_G0287171 InParanoid:Q54KQ4 OMA:QKKANEC Uniprot:Q54KQ4
Length = 1872
Score = 277 (102.6 bits), Expect = 2.4e-31, Sum P(7) = 2.4e-31
Identities = 75/279 (26%), Positives = 136/279 (48%)
Query: 677 SRLETSSAICCVCSDP-PEDSVVTMCGHVFCYQCASEYITGDDN----MCPAPRCKEQLG 731
S + +IC +C + ++ V+ +CGH FCY C I N CP R + +
Sbjct: 1556 STVTDEKSICAICQEVFGKNVVMLLCGHSFCYDCVMFMIEKVPNCRTIQCPICRARSNI- 1614
Query: 732 ADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYIS---SKIRTVL-DILHTQCEL 787
++ + T +N D S + K L I+ I+T+ +I+ T
Sbjct: 1615 EEISYLSTDKENGELVDN--SNVKGSYGTKIESLVQSVINIQKKSIKTIQPNIIPTTTST 1672
Query: 788 NTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRL 847
T + + + S+ ++ K E K I+FSQW +L+++ +L ++ IQ+ +
Sbjct: 1673 TTTTTTTTTNTNTNTTNSN-INIKKD-ESIQKIIIFSQWADVLEIISRALKENEIQFAKA 1730
Query: 848 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAV 907
S + + A+ F D + V+L+ L G GLN++ A+HV L++ NP E QA+
Sbjct: 1731 VHRGS--SFEMAINQFRKDPNVNVLLLPLIKGGNGLNLIEATHVFLVEPILNPALEKQAI 1788
Query: 908 DRAHRIGQTRPVTVTRLTIRDTVEDRILK---LQDDKRK 943
+R HR GQ + + R I++T+E+++++ L++ KRK
Sbjct: 1789 NRVHRFGQNKETNIHRFIIKNTIEEKVVQMNQLKEQKRK 1827
Score = 111 (44.1 bits), Expect = 2.4e-31, Sum P(7) = 2.4e-31
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELAKYDVVLTTYSIVTN 445
TL+V P ++ QW E+ V L V IY+G + K +P +LA YD+VLTTY ++++
Sbjct: 762 TLIVAPNTIFTQWQEEI---VKHTNGLKVYIYNGIYKDKINPFQLADYDLVLTTYDVLSD 818
Query: 446 E 446
+
Sbjct: 819 D 819
Score = 77 (32.2 bits), Expect = 2.4e-31, Sum P(7) = 2.4e-31
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 286 MLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+L + L +GGILAD+ GLGKT+ + L+
Sbjct: 539 LLSDKKDDLSLMGGILADEMGLGKTVEFLGLV 570
Score = 57 (25.1 bits), Expect = 2.4e-31, Sum P(7) = 2.4e-31
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV-DFSKEEWAFYKKLESDSLKK----FK 616
++ ++M+R +K I + + LP + + TK+ FS E +Y+K ++ ++ F+
Sbjct: 936 IVHSVMIRNSKA-MIRNE--LQLPNQYDNDTKLLRFSMVEAHYYQKKANECSQEARLLFQ 992
Query: 617 AFADAGTVNQNYA-----NILLMLLRLRQACDH 644
+ G Q+ + +IL LL LRQ C H
Sbjct: 993 KYFRGGRSIQDISISHLNSILAPLLVLRQTCQH 1025
Score = 57 (25.1 bits), Expect = 2.4e-31, Sum P(7) = 2.4e-31
Identities = 23/111 (20%), Positives = 46/111 (41%)
Query: 91 HQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSL 150
HQ + Q D++ S ++N + + + P+ + + + S+QQ QPH
Sbjct: 15 HQQNGSQGDETRNSSESQN--KRKKIQPKRLSQGQLNEKSWSNQQQ---------QPHQQ 63
Query: 151 NTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIM 201
N + ++ N N++ + N + N+ +Y + NDD M
Sbjct: 64 NNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNYIIIDNDDTPM 109
Score = 48 (22.0 bits), Expect = 2.4e-31, Sum P(7) = 2.4e-31
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 510 VGWFRVVLDEAQTIKN 525
+ W+R+ LDEAQ +++
Sbjct: 847 IKWWRICLDEAQMVES 862
Score = 39 (18.8 bits), Expect = 2.4e-31, Sum P(7) = 2.4e-31
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 249 IYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+Y D + ++ + +G + L +Q A+ WML +E
Sbjct: 434 LYDNVKMDSDAVEISKSKFNGQMISTLKPYQLKAVNWMLNRE 475
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 260 (96.6 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 59/152 (38%), Positives = 84/152 (55%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T ML ++ L + +DG R V FN + E + L+SLKAG
Sbjct: 917 LLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFN-EGENDIFLISLKAGG 975
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
GLN+V A VIL DLWWNP E+QA RAHRIGQ R V V R+ + T+E+RI LQ
Sbjct: 976 TGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIFDLQKK 1035
Query: 941 KRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972
K+ +V G +L+ E+++ + +
Sbjct: 1036 KQALVDELI--QPGEQMLGKLSTEEIKQILQL 1065
Score = 95 (38.5 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 250 YQAALEDLN-QPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
++ L D+ Q + LP GL L +Q WM ++ + + LGGILADD GLG
Sbjct: 591 FRELLTDITTQSEDSFALPKGL-KAELRDYQLTGFEWM---KSLAKYNLGGILADDMGLG 646
Query: 309 KTISIIALI 317
KT+ I+ +
Sbjct: 647 KTVQTISFL 655
Score = 75 (31.5 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 32/108 (29%), Positives = 50/108 (46%)
Query: 556 YKKLQAVLRAIMLRRTKGTFIDGQPIIN-LPPKTISLTKVDFSKEEWAFYKKLESDSLKK 614
Y + ++R +LRR K Q ++ LP K + + + E+ Y L+K
Sbjct: 803 YDNIAKMIRPFLLRRLK------QDVVKELPDKIETNLYSELTDEQKTIYLAY----LEK 852
Query: 615 FKAFADAGTVNQNYANILLM--LLRLRQ-ACDHPLLVKEYDFDSVGKI 659
+A +A N + I L+ L RLRQ CD L V+ Y +S GK+
Sbjct: 853 IQADLEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGES-GKL 899
Score = 73 (30.8 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYDVVLTTYSIVTN 445
L++ PAS+L W ELE P A+ V + HG SR + E+ V L +Y +
Sbjct: 669 LIITPASLLYNWQSELEKFAP---AIPVTVLHGTKQSRIAEMEEMKHGHVYLISYPSLRQ 725
Query: 446 EV 447
++
Sbjct: 726 DI 727
Score = 68 (29.0 bits), Expect = 5.6e-28, Sum P(4) = 5.6e-28
Identities = 27/109 (24%), Positives = 52/109 (47%)
Query: 579 QPIINLPPKTISLTKVDFSKEEWAFYKKLESD--SLKKFKAFADAGTVNQNYANILLMLL 636
Q I++ S +D S+ ++ K +LK+ FA +GT +N + L +
Sbjct: 725 QDIVHFADVAFSSVIIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIF 784
Query: 637 RLRQACDHPLL--VKEYDFDSVGK-ISGEMAKRLPRDMLIDLLSRLETS 682
+ P L KE +D++ K I + +RL +D++ +L ++ET+
Sbjct: 785 QTLMPGFFPSLRKFKEIPYDNIAKMIRPFLLRRLKQDVVKELPDKIETN 833
Score = 67 (28.6 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSL-HGYKKLQAVLRAI 566
A V + V++DE+Q IKN+ T+ ++A +L KR+ + +S L + +L A+ + +
Sbjct: 731 ADVAFSSVIIDESQAIKNYHTKASQAVRAL--KRNHV-FALSGTPLENSIDELWAIFQTL 787
Query: 567 M 567
M
Sbjct: 788 M 788
Score = 47 (21.6 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
Identities = 16/52 (30%), Positives = 20/52 (38%)
Query: 647 LVKEYDFDSV--GKISGEMAK-RLPRDMLIDLLSRLETSSAICCVCSDPPED 695
+ K YD DS K E +P M DLL L C + + ED
Sbjct: 209 IAKMYDTDSFYWSKSYAEEKNLTIPPSMASDLLELLTERDTTCIIMKERVED 260
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 577 DGQPIINLPPKTISLTKVD 595
DGQ + + KT S T++D
Sbjct: 936 DGQTLFYMDGKTPSKTRLD 954
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 274 (101.5 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 57/138 (41%), Positives = 85/138 (61%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD +I + L+S KAG
Sbjct: 851 VLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDMDIFIFLLSTKAGG 910
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQT+ V V +L + T+E+ +LK+
Sbjct: 911 LGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGTIEESMLKISQQ 970
Query: 941 KRKMVASAFGEDQGG-GT 957
K ++ D G GT
Sbjct: 971 KLRLEQDMTTNDTGDEGT 988
Score = 94 (38.1 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621
+++ +LRR K + LPPK + SK++ ++L SD L K K DA
Sbjct: 691 IMKPFILRRVKSEVLK-----QLPPKQDKIKFCQMSKKQ----EQLYSDLLNKLKKSIDA 741
Query: 622 GTVNQNYANILLMLLRLRQACDHPLLVKEY 651
N N+++ LR+ +HPLL ++Y
Sbjct: 742 TEKNSELCNVMM---HLRKMANHPLLHRQY 768
Score = 80 (33.2 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 270 LLSVNL-LK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++S NL LK +QKI L W+ H + ILAD+ GLGKT+ IA +
Sbjct: 467 IMSENLVLKPYQKIGLNWLALLHK---HKVNMILADEMGLGKTVQAIAFL 513
Score = 77 (32.2 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
LVV PAS + W RE P ++++L+Y+G + + ++ +++V++TTY+
Sbjct: 526 LVVVPASTMDNWIREFNQWCP---SMNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYN 582
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 282 (104.3 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 55/136 (40%), Positives = 87/136 (63%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE-ITVMLMSLK 877
K ++FSQWT++LD+++ ++ + R+DG++ L R R +KDF+ ++ ++ L+S +
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG LG+N+ AA IL D WNP + QA+DR HRIGQT+PV V RL+ ++E R+LK
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKR 661
Query: 938 QDDKRKMVASAFGEDQ 953
K K+ G+ Q
Sbjct: 662 AYSKLKLEHVVIGQGQ 677
Score = 80 (33.2 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-------PVELA-KYDVVLTT 439
LV+ P S L W E+ P +++ +IYHG +D P + K+ +V+T+
Sbjct: 254 LVIAPLSTLSNWFNEIARFTP---SINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITS 310
Query: 440 YSIVTNEVPK 449
Y + N+ +
Sbjct: 311 YEVAMNDAKR 320
Score = 71 (30.1 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 32/127 (25%), Positives = 61/127 (48%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
KL +LR +LRR K D + ++LP K + + + F + L +++L+
Sbjct: 419 KLHGILRPFILRRMK---CDVE--LSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAH-- 471
Query: 618 FADAGTVNQNYANILL-MLLRLRQACDHPLLVK-----EYDFDSVGKISGEMAK-RLPRD 670
+ Q + L ++++LR+ C+HP L++ Y + V +I G+ K RL
Sbjct: 472 LGENAIRGQGWKGKLNNLVIQLRKNCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLER 531
Query: 671 MLIDLLS 677
+L+ L +
Sbjct: 532 LLVRLFA 538
Score = 66 (28.3 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 270 LLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL+ LK +Q + W++ L+ GILAD GLGKTI I +
Sbjct: 196 LLTGGQLKSYQLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIGFL 241
Score = 55 (24.4 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVL 563
W VV+DE +KNH+ ++ R L+ + P+ N + L +L
Sbjct: 327 WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFIL 380
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 274 (101.5 bits), Expect = 5.5e-31, Sum P(5) = 5.5e-31
Identities = 58/153 (37%), Positives = 90/153 (58%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
+ ++F+Q ++MLD+++ L+ H QY RLDGT + R ++ FN D ++ ++S ++
Sbjct: 1206 RCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRS 1265
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G +G+N+ A VI D WNPT + QA DR HRIGQTR V++ RL T+E+ IL+
Sbjct: 1266 GGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKA 1325
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVED-LRYLF 970
KR++ A D+ G T D +R LF
Sbjct: 1326 TQKRRLGELAI--DEAGFTPEFFKQSDSIRDLF 1356
Score = 98 (39.6 bits), Expect = 5.5e-31, Sum P(5) = 5.5e-31
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 234 SGSADER----AVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQK 289
S +DER A +E L +Q L +V+ +P L+ L ++Q + L WM+
Sbjct: 514 SQDSDERQQELANIAEEALKFQPKGYTLETTQVKTPVPF-LIRGQLREYQMVGLDWMVTL 572
Query: 290 ETRSLHCLGGILADDQGLGKTISIIALI 317
++L+ GILAD+ GLGKTI I+L+
Sbjct: 573 YEKNLN---GILADEMGLGKTIQTISLL 597
Score = 77 (32.2 bits), Expect = 5.5e-31, Sum P(5) = 5.5e-31
Identities = 45/175 (25%), Positives = 77/175 (44%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L VLR +LRR K ++ Q LP KT + SK + Y S + K
Sbjct: 768 RLHKVLRPFILRRLKKE-VEKQ----LPEKTEHIVNCSLSKRQRYLYDDFMSR--RSTKE 820
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDL-- 675
+G N ++L ++++LR+ C+HP L F+ ++ + ++L D+ L
Sbjct: 821 NLKSG----NMMSVLNIVMQLRKCCNHPNL-----FEPRPVVAPFVVEKLQLDVPARLFE 871
Query: 676 LSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMC--PAPRCKE 728
+S+ + SS+ S PE ++ G+ + A I + M P PR E
Sbjct: 872 ISQQDPSSSSA---SQIPEIFNLSKIGYQSSVRSAKPLIEELEAMSTYPEPRAPE 923
Score = 71 (30.1 bits), Expect = 5.5e-31, Sum P(5) = 5.5e-31
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSL 553
W ++LDEAQ IKN ++Q +A ++RA+R + P+ +NSL
Sbjct: 680 WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPL-QNSL 722
Score = 67 (28.6 bits), Expect = 5.5e-31, Sum P(5) = 5.5e-31
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-------YDVVLTTY 440
L+V P SV+ W E + P AL +L Y G + K+ E K + V +T+Y
Sbjct: 611 LIVVPTSVILNWEMEFKKWCP---ALKILTYFGTA--KERAEKRKGWMKPNCFHVCITSY 665
Query: 441 SIVTNEV 447
VT ++
Sbjct: 666 KTVTQDI 672
Score = 40 (19.1 bits), Expect = 4.1e-25, Sum P(5) = 4.1e-25
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 185 KGYIRDYYVKKNDDDIMMYEGNR--ILPSSLMHGKSV 219
+G +R+Y + D + +YE N IL + GK++
Sbjct: 555 RGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTI 591
Score = 39 (18.8 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 383 PAAGTL--VVCPASVLRQWARELEDKVPDK 410
P G L V+ P +LR+ +E+E ++P+K
Sbjct: 764 PLIGRLHKVLRPF-ILRRLKKEVEKQLPEK 792
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 279 (103.3 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 59/138 (42%), Positives = 86/138 (62%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD +I V L+S KAG
Sbjct: 874 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGG 933
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQT+ V V +L + T+E+ +LK+
Sbjct: 934 LGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQ 993
Query: 941 KRKMVASAFGEDQGG-GT 957
K K+ D+G GT
Sbjct: 994 KLKLEQDMTTVDEGDEGT 1011
Score = 92 (37.4 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 536
Score = 75 (31.5 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + + +Y+V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
Score = 58 (25.5 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621
+++ +LRR K + LPPK + S+++ Y L + LKK +
Sbjct: 714 IIKPFILRRVKEEVLK-----QLPPKKDQIELCAMSEKQEQLYLGL-FNRLKKSINNIEK 767
Query: 622 GTVNQNYANILLMLLRLRQACDHPLLVKEY 651
T N+++ +LR+ +HPLL ++Y
Sbjct: 768 ST---EMCNVMM---QLRKMANHPLLHRQY 791
Score = 48 (22.0 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 112 QLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVEN 160
Q + N + A+ S +Y K +++ LK+ PQ + N K K +V N
Sbjct: 303 QSEFPNGKEASSRSQNYPKNAAKTKLKQKCSMKPQ-NGFNKKRKKNVFN 350
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 279 (103.3 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 59/138 (42%), Positives = 86/138 (62%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD +I V L+S KAG
Sbjct: 874 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGG 933
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQT+ V V +L + T+E+ +LK+
Sbjct: 934 LGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQ 993
Query: 941 KRKMVASAFGEDQGG-GT 957
K K+ D+G GT
Sbjct: 994 KLKLEQDMTTVDEGDEGT 1011
Score = 92 (37.4 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 536
Score = 75 (31.5 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + + +Y+V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
Score = 58 (25.5 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621
+++ +LRR K + LPPK + S+++ Y L + LKK +
Sbjct: 714 IIKPFILRRVKEEVLK-----QLPPKKDQIELCAMSEKQEQLYLGL-FNRLKKSINNIEK 767
Query: 622 GTVNQNYANILLMLLRLRQACDHPLLVKEY 651
T N+++ +LR+ +HPLL ++Y
Sbjct: 768 ST---EMCNVMM---QLRKMANHPLLHRQY 791
Score = 48 (22.0 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 112 QLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVEN 160
Q + N + A+ S +Y K +++ LK+ PQ + N K K +V N
Sbjct: 303 QSEFPNGKEASSRSQNYPKNAAKTKLKQKCSMKPQ-NGFNKKRKKNVFN 350
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 279 (103.3 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 59/138 (42%), Positives = 86/138 (62%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD +I V L+S KAG
Sbjct: 874 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGG 933
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQT+ V V +L + T+E+ +LK+
Sbjct: 934 LGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQ 993
Query: 941 KRKMVASAFGEDQGG-GT 957
K K+ D+G GT
Sbjct: 994 KLKLEQDMTTVDEGDEGT 1011
Score = 92 (37.4 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 536
Score = 75 (31.5 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + + +Y+V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
Score = 58 (25.5 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621
+++ +LRR K + LPPK + S+++ Y L + LKK +
Sbjct: 714 IIKPFILRRVKEEVLK-----QLPPKKDQIELCAMSEKQEQLYLGL-FNRLKKSINNIEK 767
Query: 622 GTVNQNYANILLMLLRLRQACDHPLLVKEY 651
T N+++ +LR+ +HPLL ++Y
Sbjct: 768 ST---EMCNVMM---QLRKMANHPLLHRQY 791
Score = 48 (22.0 bits), Expect = 7.8e-30, Sum P(5) = 7.8e-30
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 112 QLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVEN 160
Q + N + A+ S +Y K +++ LK+ PQ + N K K +V N
Sbjct: 303 QSEFPNGKEASSRSQNYPKNAAKTKLKQKCSMKPQ-NGFNKKRKKNVFN 350
>RGD|1310342 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00526 RGD:1310342 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218 OrthoDB:EOG4G4GPJ
EMBL:CH473994 IPI:IPI00869721 RefSeq:NP_001100940.1 UniGene:Rn.2515
Ensembl:ENSRNOT00000019893 GeneID:308282 KEGG:rno:308282
UCSC:RGD:1310342 NextBio:658533 Uniprot:D4A9B2
Length = 1701
Score = 218 (81.8 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 53/161 (32%), Positives = 88/161 (54%)
Query: 811 KSPIEGP-IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREI 869
K ++ P K++VFS W +LD++ +L + + + ++ + A F D +I
Sbjct: 1539 KIQLKDPGAKALVFSTWQDVLDIISKALTDNNMGFTQISRIKTFQENLSA---FKYDPQI 1595
Query: 870 TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929
++L+ L G+ GL ++ A+HV+L++ NP E QA+ R HRIGQT+P V R I+ T
Sbjct: 1596 NILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKAT 1655
Query: 930 VEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+E+R+ + + S+ G+ AS LTV DL LF
Sbjct: 1656 IEERMQAMLKTAERSHTSSSGKHS---EASALTVADLADLF 1693
Score = 98 (39.6 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 716 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 774
Query: 445 NEV 447
+E+
Sbjct: 775 SEL 777
Score = 95 (38.5 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKK 614
L + + IM R K ID I +PP+T + + FS E FY + D++ K
Sbjct: 890 LYSFIAKIMWRSAKKDVIDQ---IQIPPQTEEMHWLHFSPVERHFYHRQHEVCCQDAVVK 946
Query: 615 FKAFAD-----AGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +D + + ++IL LLRLRQAC HP V+
Sbjct: 947 LRKISDWALKLSSLDRRTVSSILYPLLRLRQACCHPQAVR 986
Score = 82 (33.9 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 360 LGGILADEMGLGKTVEVLALI 380
Score = 58 (25.5 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 506 PLAKVGWFRVVLDEAQTIK 524
PL V W+R+ LDEAQ ++
Sbjct: 805 PLVAVEWWRICLDEAQMVE 823
Score = 57 (25.1 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 660 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 711
+ ++ K+L + + + L + + TS I C +C+ + V CGH FC +C S
Sbjct: 1418 TSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECTS 1476
Score = 43 (20.2 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 255 EDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 QEAKSVQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 313
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 265 (98.3 bits), Expect = 1.5e-29, Sum P(5) = 1.5e-29
Identities = 59/154 (38%), Positives = 87/154 (56%)
Query: 811 KSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT 870
K EG + ++FSQ+T MLD+VE L + RLDG ++ R + DFN D I
Sbjct: 663 KLKAEGH-RVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSIF 721
Query: 871 VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 930
V L+S KAG +G+N+ AA ++ D+ +NP + QA DR HR+GQ RPVT+ RL T+
Sbjct: 722 VFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTI 781
Query: 931 EDRILKLQDDKRKMVASAFGEDQGGGTASRLTVE 964
E+ IL ++K K+ ++G R V+
Sbjct: 782 EEGILMAAEEKLKLEKDITSNEKGEVHEQRCVVK 815
Score = 86 (35.3 bits), Expect = 1.5e-29, Sum P(5) = 1.5e-29
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
+ QPK+ L GL L +Q I L W+ + ++ GILAD+ GLGKTI +IA
Sbjct: 277 VEQPKL---LSSGL---QLADYQIIGLNWLTVMHKQEMN---GILADEMGLGKTIQVIAF 327
Query: 317 I 317
+
Sbjct: 328 L 328
Score = 76 (31.8 bits), Expect = 1.5e-29, Sum P(5) = 1.5e-29
Identities = 29/111 (26%), Positives = 54/111 (48%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++ + +++ +LRR K + NLP K + KV S ++ +Y +L D K
Sbjct: 506 QRAKRIMKPFVLRRLKKDVLK-----NLPKKLSLVEKVPMSSQQKIYYHELV-DYYSNNK 559
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRL 667
+ + A I +M+ +R+ +HPLL++ Y D+ + G +KRL
Sbjct: 560 GEVCSSSER---AGIAIMM-EMRRIANHPLLMRHYFTDA--NLRG-FSKRL 603
Score = 75 (31.5 bits), Expect = 1.5e-29, Sum P(5) = 1.5e-29
Identities = 26/73 (35%), Positives = 35/73 (47%)
Query: 385 AGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVELAK-----YDVVL 437
A L+V P+S L W E+ P+ L V YHG R + AK +DV+L
Sbjct: 339 AAHLIVVPSSTLDNWEAEISRWCPE---LVVEKYHGSQDERRRMRGRFAKDGFTGFDVLL 395
Query: 438 TTYSIVTNEVPKQ 450
TTY IV P++
Sbjct: 396 TTYHIV-GSTPEE 407
Score = 42 (19.8 bits), Expect = 1.5e-29, Sum P(5) = 1.5e-29
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSL 553
V+ DEA +KN TQ ++ A+ + P+ N L
Sbjct: 419 VIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLL 459
Score = 40 (19.1 bits), Expect = 3.5e-22, Sum P(3) = 3.5e-22
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 569 RRTKGTFI-DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN 627
RR +G F DG ++ T + V + EE ++ + D + +A Q
Sbjct: 377 RRMRGRFAKDGFTGFDVLLTTYHI--VGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQR 434
Query: 628 YANILLMLLRLR 639
YAN++ + R+R
Sbjct: 435 YANLITINARMR 446
>MGI|MGI:1917581 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00526 UniPathway:UPA00143 MGI:MGI:1917581
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ EMBL:AY162264 EMBL:AY162265
EMBL:AY162266 EMBL:AK053448 EMBL:AK082160 EMBL:BC006883
EMBL:BC055003 IPI:IPI00380430 IPI:IPI00469003 IPI:IPI00623316
IPI:IPI00845816 RefSeq:NP_001071175.1 RefSeq:NP_766525.3
UniGene:Mm.133101 ProteinModelPortal:Q7TPQ3 SMR:Q7TPQ3
STRING:Q7TPQ3 PhosphoSite:Q7TPQ3 PaxDb:Q7TPQ3 PRIDE:Q7TPQ3
Ensembl:ENSMUST00000044053 Ensembl:ENSMUST00000054814
Ensembl:ENSMUST00000159541 Ensembl:ENSMUST00000159810 GeneID:268281
KEGG:mmu:268281 UCSC:uc007ejp.1 UCSC:uc007ejq.1 InParanoid:Q7TPQ3
OMA:FEGLVKQ ChiTaRS:SHPRH NextBio:392208 Bgee:Q7TPQ3
CleanEx:MM_SHPRH Genevestigator:Q7TPQ3 Uniprot:Q7TPQ3
Length = 1674
Score = 210 (79.0 bits), Expect = 1.7e-29, Sum P(7) = 1.7e-29
Identities = 50/152 (32%), Positives = 83/152 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K++VFS W +LD++ +L + +++ ++ + A F D I ++L+ L
Sbjct: 1521 KALVFSTWQDVLDIISKALTDNNMEFTQISRIKTFQENLSA---FKYDPHINILLLPLHT 1577
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G+ GL ++ A+HV+L++ NP E QA+ R HRIGQT+P V R I+ T+E+R+ +
Sbjct: 1578 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1637
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ S+ G+ AS LTV L LF
Sbjct: 1638 KTAERSHTSSSGKHS---EASVLTVAGLADLF 1666
Score = 97 (39.2 bits), Expect = 1.7e-29, Sum P(7) = 1.7e-29
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 709 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVLR 767
Query: 445 NEV 447
+E+
Sbjct: 768 SEL 770
Score = 96 (38.9 bits), Expect = 1.7e-29, Sum P(7) = 1.7e-29
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKK 614
L + + IM R K ID I +PP+T + + FS E FY + D++ K
Sbjct: 883 LYSFIAKIMWRSAKKDVIDQ---IQIPPQTEEMHWLHFSPVERHFYHRQHEVCCQDAIVK 939
Query: 615 FKAFAD-----AGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +D + + ++IL LLRLRQAC HP V+
Sbjct: 940 LRKISDWALKLSSLDRRTVSSILYPLLRLRQACCHPQAVR 979
Score = 82 (33.9 bits), Expect = 1.7e-29, Sum P(7) = 1.7e-29
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 362 LGGILADEMGLGKTVEVLALI 382
Score = 58 (25.5 bits), Expect = 1.7e-29, Sum P(7) = 1.7e-29
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 506 PLAKVGWFRVVLDEAQTIK 524
PL V W+R+ LDEAQ ++
Sbjct: 798 PLVAVEWWRICLDEAQMVE 816
Score = 57 (25.1 bits), Expect = 1.7e-29, Sum P(7) = 1.7e-29
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 660 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 711
+ ++ K+L + + + L + + TS I C +C+ + V CGH FC +C S
Sbjct: 1391 TSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECTS 1449
Score = 50 (22.7 bits), Expect = 1.7e-29, Sum P(7) = 1.7e-29
Identities = 25/97 (25%), Positives = 41/97 (42%)
Query: 199 DIMMYEGNRILP-SSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIY----QAA 253
D M G+R+ + LM + F P L ++ G D +Y Q
Sbjct: 220 DFMSDAGSRMKKFNQLMKRVMEKLHNFIIPDVLEEEEEGSESEPEGQDIDELYHFVKQTH 279
Query: 254 LEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 QQETRSVQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 314
>UNIPROTKB|E1C5L6 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:AADN02025316 IPI:IPI00575038 Ensembl:ENSGALT00000020082
Uniprot:E1C5L6
Length = 1682
Score = 219 (82.2 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 54/153 (35%), Positives = 87/153 (56%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
KS+VFS W +LD++ +L + + + +++G A F D +I ++L+ L
Sbjct: 1529 KSLVFSTWQDVLDIIAKALYDNNMTFSQINGISKFQENLSA---FKYDPKINILLLPLHT 1585
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI-LKL 937
G+ GLN++ A+HV+L++ NP E QA+ R HRIGQT+ V R I+ T+E+R+ L
Sbjct: 1586 GSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQTML 1645
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ R +S+ + + AS LTV DL LF
Sbjct: 1646 KTVDRSHTSSSMKQSE----ASVLTVADLADLF 1674
Score = 105 (42.0 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ DVV+TTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 445 NEVPKQPSVDEEEADEKNGETY 466
E+ VD ++ ++G +
Sbjct: 777 TELNY---VDIPHSNSEDGRRF 795
Score = 101 (40.6 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 33/100 (33%), Positives = 49/100 (49%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKK 614
L +++ IM R K ID I +PP+T ++ + FS E FY + D+L K
Sbjct: 892 LYSLIAKIMWRSAKKDVIDQ---IQIPPQTENIHWLHFSPVERHFYHRQHEVCCQDALAK 948
Query: 615 FKAFAD-----AGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +D + + +IL LLRLRQAC HP V+
Sbjct: 949 LRKISDWTLKLSSLDRRTVTSILYPLLRLRQACCHPQAVR 988
Score = 78 (32.5 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILAD+ GLGKT+ ++ALI
Sbjct: 371 GGILADEMGLGKTVEVLALI 390
Score = 58 (25.5 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 506 PLAKVGWFRVVLDEAQTIK 524
PL V W+R+ LDEAQ ++
Sbjct: 807 PLVAVEWWRICLDEAQMVE 825
Score = 51 (23.0 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 686 CCVCSDP-PEDSVVTMCGHVFCYQC 709
C +C+ + V CGH FC +C
Sbjct: 1431 CPICARQLGKQWAVLTCGHCFCNEC 1455
Score = 37 (18.1 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 173 AYHLAGPSTVNSKGYIRDYYVKKNDDD 199
A++L TV+ + + R + + + D D
Sbjct: 122 AFYLPSEQTVSEEFHERGFTLMRGDSD 148
>UNIPROTKB|E1C615 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 EMBL:AADN02025316
IPI:IPI00821492 Ensembl:ENSGALT00000037603 Uniprot:E1C615
Length = 1682
Score = 219 (82.2 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 54/153 (35%), Positives = 87/153 (56%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
KS+VFS W +LD++ +L + + + +++G A F D +I ++L+ L
Sbjct: 1529 KSLVFSTWQDVLDIIAKALYDNNMTFSQINGISKFQENLSA---FKYDPKINILLLPLHT 1585
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI-LKL 937
G+ GLN++ A+HV+L++ NP E QA+ R HRIGQT+ V R I+ T+E+R+ L
Sbjct: 1586 GSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQTML 1645
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ R +S+ + + AS LTV DL LF
Sbjct: 1646 KTVDRSHTSSSMKQSE----ASVLTVADLADLF 1674
Score = 105 (42.0 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ DVV+TTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 445 NEVPKQPSVDEEEADEKNGETY 466
E+ VD ++ ++G +
Sbjct: 777 TELNY---VDIPHSNSEDGRRF 795
Score = 101 (40.6 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 33/100 (33%), Positives = 49/100 (49%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKK 614
L +++ IM R K ID I +PP+T ++ + FS E FY + D+L K
Sbjct: 892 LYSLIAKIMWRSAKKDVIDQ---IQIPPQTENIHWLHFSPVERHFYHRQHEVCCQDALAK 948
Query: 615 FKAFAD-----AGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +D + + +IL LLRLRQAC HP V+
Sbjct: 949 LRKISDWTLKLSSLDRRTVTSILYPLLRLRQACCHPQAVR 988
Score = 78 (32.5 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILAD+ GLGKT+ ++ALI
Sbjct: 366 GGILADEMGLGKTVEVLALI 385
Score = 58 (25.5 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 506 PLAKVGWFRVVLDEAQTIK 524
PL V W+R+ LDEAQ ++
Sbjct: 807 PLVAVEWWRICLDEAQMVE 825
Score = 51 (23.0 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 686 CCVCSDP-PEDSVVTMCGHVFCYQC 709
C +C+ + V CGH FC +C
Sbjct: 1431 CPICARQLGKQWAVLTCGHCFCNEC 1455
Score = 37 (18.1 bits), Expect = 1.8e-29, Sum P(7) = 1.8e-29
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 173 AYHLAGPSTVNSKGYIRDYYVKKNDDD 199
A++L TV+ + + R + + + D D
Sbjct: 117 AFYLPSEQTVSEEFHERGFTLMRGDSD 143
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 254 (94.5 bits), Expect = 2.3e-29, Sum P(4) = 2.3e-29
Identities = 64/161 (39%), Positives = 88/161 (54%)
Query: 802 SNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPARDR 858
SNG + + + E + ++F Q MLD+VE L Q + Y RLDG++ R
Sbjct: 1723 SNGIDSALTNAVSEHRV--LIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQE 1780
Query: 859 AVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 918
AV FN D I V+L++ G LGLN+ A VI ++ WNP + QA+DRAHRIGQ +
Sbjct: 1781 AVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKV 1840
Query: 919 VTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTAS 959
V V RL R +E++I+ LQ K VAS Q G +S
Sbjct: 1841 VNVYRLITRGCLEEKIMGLQRFKMN-VASTVVNQQNAGLSS 1880
Score = 97 (39.2 bits), Expect = 2.3e-29, Sum P(4) = 2.3e-29
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 245 DERLIYQAALED-LNQPKVEA-TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILA 302
D R + LE LN KVEA ++P + S +L K+Q+ + W+ LH GIL
Sbjct: 1327 DSREKERKFLEQMLNPSKVEAFSIPVPI-SADLRKYQQEGVNWLAFLNKYELH---GILC 1382
Query: 303 DDQGLGKTISIIALI 317
DD GLGKT+ I ++
Sbjct: 1383 DDMGLGKTLQTICIV 1397
Score = 96 (38.9 bits), Expect = 2.3e-29, Sum P(4) = 2.3e-29
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHG--GSRTKDPVELAKYDVVLTTYSIVT 444
+L+VCP+++ W +EL P L V Y G R K ++ K DVV+T+Y I
Sbjct: 1421 SLIVCPSTLAGHWQQELSTYAP---FLKVSAYVGPPAERAKIRSKMKKSDVVVTSYDICR 1477
Query: 445 NEVPKQPSVD 454
N+V + +D
Sbjct: 1478 NDVDELVKID 1487
Score = 76 (31.8 bits), Expect = 2.3e-29, Sum P(4) = 2.3e-29
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSL 553
L K+ W VLDE IKN R ++ +A SLR+ I PI N L
Sbjct: 1483 LVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVL 1531
Score = 42 (19.8 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 607 LESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS 660
++ D L A +NYAN++ L +R C+ LL F VG++S
Sbjct: 850 IQKDELYHLLCDQFATVPRENYANLVSQLHVVRAQCN-ALL---NTFLDVGRLS 899
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 265 (98.3 bits), Expect = 2.6e-29, Sum P(5) = 2.6e-29
Identities = 66/165 (40%), Positives = 95/165 (57%)
Query: 813 PIEGPI---KSIVFSQWTRMLDLVENSLNQH---CIQYRRLDGTMSLPARDRAVKDFNTD 866
PI+ I ++++F Q MLD+VEN L + + Y RLDG++ R + V+ FN D
Sbjct: 1639 PIQNVISQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNED 1698
Query: 867 REITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTI 926
I +L++ K G LGLN+ A VI ++ WNP + QA+DRAHRIGQ + V V R+
Sbjct: 1699 PSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIIT 1758
Query: 927 RDTVEDRILKLQDDKRKM-VASAFGEDQGGGTASRLTVEDLRYLF 970
+ T+E++I+ LQ K KM +AS Q G AS + L LF
Sbjct: 1759 KGTLEEKIMGLQ--KFKMNIASTVVNQQNSGLAS-MDTHQLLDLF 1800
Score = 91 (37.1 bits), Expect = 2.6e-29, Sum P(5) = 2.6e-29
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV--ELAKYDVVLTTYS 441
A +L++CP S+ W E + P L V++Y GG + + +L+ D+++T+Y
Sbjct: 1332 ALPSLIICPPSLTGHWENEFDQYAP---FLKVVVYAGGPTVRLTLRPQLSDADIIVTSYD 1388
Query: 442 IVTNEV 447
+ N++
Sbjct: 1389 VARNDL 1394
Score = 81 (33.6 bits), Expect = 2.6e-29, Sum P(5) = 2.6e-29
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
+ L K+Q+ + W+ LH GIL DD GLGKT+ I +I + L+ +
Sbjct: 1268 IKATLRKYQQDGVNWLAFLNKYHLH---GILCDDMGLGKTLQTICIIASDQYLRKE 1320
Score = 73 (30.8 bits), Expect = 2.6e-29, Sum P(5) = 2.6e-29
Identities = 40/156 (25%), Positives = 65/156 (41%)
Query: 549 SRNSLHGYKKLQAVLRAI---MLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYK 605
S+ G L+A+ + + MLRR K + +LPPK I D+ E K
Sbjct: 1483 SKEQEAGVLALEALHKQVLPFMLRRLKEDVLS-----DLPPKIIQ----DYYCELGDLQK 1533
Query: 606 KLESDSLKKFKAFADAGTVNQNYAN----ILLMLLRLRQACDHPLLVKEYDFDSVGKISG 661
+L D KK K + N A+ I L +R+ C+HP LV + + ++
Sbjct: 1534 QLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQ- 1592
Query: 662 EMAKRLPRDMLIDLLS--RLETSSAICCVCSDPPED 695
+ K+ D L D+++ +L + C ED
Sbjct: 1593 DYLKQTGLD-LHDIINAPKLSALRTLLFECGIGEED 1627
Score = 55 (24.4 bits), Expect = 2.6e-29, Sum P(5) = 2.6e-29
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSL 553
L K + VLDE IKN ++++A+A + A I PI N L
Sbjct: 1397 LNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVL 1445
Score = 46 (21.3 bits), Expect = 8.9e-26, Sum P(5) = 8.9e-26
Identities = 26/102 (25%), Positives = 43/102 (42%)
Query: 123 VASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRD-TFGNAYHLAG--- 178
VAS + E+ QQ + P+ +P L K+++ + F N YHL G
Sbjct: 1240 VASRERERDFIQQMMD---PSKAKPFKLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILC 1296
Query: 179 -----PSTVNSKGYIR-DYYVKKNDDDIMMYEGNRILPSSLM 214
T+ + I D Y++K D + +R LPS ++
Sbjct: 1297 DDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESRALPSLII 1338
Score = 44 (20.5 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 661 GEMAKRLPRDMLIDLLSRL 679
G++AK+ P D+L LLSR+
Sbjct: 32 GDLAKQHPEDIL-SLLSRV 49
Score = 41 (19.5 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 765 LDNEYISSKIRTVLDILHTQCE 786
LD++ ISS + +++D+L C+
Sbjct: 502 LDDD-ISSSVGSIMDLLAKLCD 522
Score = 39 (18.8 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 758 FADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEI 796
FAD + I E ++ IR +L ++++ L+ + E+
Sbjct: 1136 FADLAKISSVEVMAYTIREILPLMNSAGSLSDRQGSTEL 1174
Score = 37 (18.1 bits), Expect = 4.9e-20, Sum P(4) = 4.9e-20
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 432 KYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYG 467
K++ +T V V PS D E+D G G
Sbjct: 57 KWETRVTAARAVGGIVAHAPSWDPNESDLVGGTNEG 92
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 276 (102.2 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 57/134 (42%), Positives = 84/134 (62%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD +I V L+S KAG
Sbjct: 876 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGG 935
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQT+ V V +L + T+E+ +LK+
Sbjct: 936 LGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLKINQQ 995
Query: 941 KRKMVASAFGEDQG 954
K K+ D+G
Sbjct: 996 KLKLEQDMTTVDEG 1009
Score = 92 (37.4 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 496 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 538
Score = 74 (31.1 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + +Y+V++TTY+
Sbjct: 551 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYN 607
Score = 64 (27.6 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 24/108 (22%), Positives = 51/108 (47%)
Query: 547 PISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 603
P S++ +++ + +++ +LRR K + LPPK + S+++
Sbjct: 698 PADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDRIELCAMSEKQEQL 752
Query: 604 YKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 651
Y L + LKK + +N + ++++LR+ +HPLL ++Y
Sbjct: 753 YMNL-FNRLKK-----SINNMEKN-TEMCNVMMQLRKMANHPLLHRQY 793
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 258 (95.9 bits), Expect = 3.4e-29, Sum P(5) = 3.4e-29
Identities = 69/195 (35%), Positives = 108/195 (55%)
Query: 766 DNEYISSKIRTVLDI-LHTQCELNTKCSIVEIHD-LAGSNGSSAVHSKSPIEGPIKS--- 820
D I + + D LH C + S ++ L +G A+ +K+ + K
Sbjct: 761 DPALIQEDMEVMSDFELHNLCREYSSISGFQLEKALILDSGKFALLTKTLAKLKEKGDRV 820
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD+VE L QY RLDG+ + R + +NT+ EI V L+S +AG
Sbjct: 821 VLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPEIFVFLLSTRAGG 880
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
G+N+ +A+ VIL D+ NP + QA DR HR+GQTR V V +L +D++ED +L++ +
Sbjct: 881 QGINLASANTVILHDIDCNPFNDKQAEDRCHRMGQTRTVQVIKLISKDSIEDCMLRVGQE 940
Query: 941 KRKM---VASAFGED 952
K K+ + + GED
Sbjct: 941 KLKLEQDMTTDEGED 955
Score = 103 (41.3 bits), Expect = 3.4e-29, Sum P(5) = 3.4e-29
Identities = 36/109 (33%), Positives = 50/109 (45%)
Query: 209 LPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPD 268
L L+HG V + + DL R ++ D + +A + + QPKV L
Sbjct: 389 LSIDLVHGCKVVLKERQVVLDLMGRCEKIAQKMTK-DVTQVIEAGMGSIKQPKV---LNS 444
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L L +Q I L W++ H L GILAD+ GLGKTI IA +
Sbjct: 445 NL---KLQAYQLIGLKWLILLHQ---HKLSGILADEMGLGKTIQAIAFL 487
Score = 71 (30.1 bits), Expect = 3.4e-29, Sum P(5) = 3.4e-29
Identities = 30/118 (25%), Positives = 52/118 (44%)
Query: 551 NSLHGYKKLQA--VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLE 608
+S H + QA +++ +LRR K + LPPK + S + Y L
Sbjct: 650 SSFHKDRIAQARLIMKPFILRRVKSEVLK-----ELPPKMEKIEMCPMSDAQHKLYDIL- 703
Query: 609 SDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY-DFDSVGKISGEMAK 665
K+ K T N + + ++++LR+ +HPLL ++Y D + +S M K
Sbjct: 704 ---FKRLKK-----TPNGDKRELCNVMMQLRKMANHPLLHRQYYTSDKLAAMSKAMLK 753
Score = 67 (28.6 bits), Expect = 3.4e-29, Sum P(5) = 3.4e-29
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE------LAKYDVVLTTYS 441
L+ P+S L W REL P +L VLIY+G + + L ++++++TY+
Sbjct: 500 LITVPSSTLDNWVRELGLWCP---SLKVLIYYGSVEDRKYLRQDILTGLIDFNIIVSTYN 556
Query: 442 I 442
+
Sbjct: 557 L 557
Score = 47 (21.6 bits), Expect = 3.4e-29, Sum P(5) = 3.4e-29
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIAN---VASADYEKISSQQALKRTLPAF 144
S ++Q S ++ SH + Q + + ++ AS+ ++SS ALK A
Sbjct: 223 SPENQKSKQKSKSSHSKEKTDKITQRPSGSSSLSRWLTAASSHVPEVSSMSALKTQKSAL 282
Query: 145 PQPHSLNTKSK 155
+ S N+ K
Sbjct: 283 SKSTSKNSSFK 293
Score = 38 (18.4 bits), Expect = 2.2e-19, Sum P(3) = 2.2e-19
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
S DE+ DE++ E E + K ++K+
Sbjct: 158 SEDEDSEDEESEEPSREKQEALLKKLKRKL 187
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 277 (102.6 bits), Expect = 5.0e-29, Sum P(4) = 5.0e-29
Identities = 57/134 (42%), Positives = 84/134 (62%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD +I V L+S KAG
Sbjct: 877 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGG 936
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQT+ V V +L + T+E+ +LK+
Sbjct: 937 LGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQ 996
Query: 941 KRKMVASAFGEDQG 954
K K+ D+G
Sbjct: 997 KLKLEQDMTTIDEG 1010
Score = 92 (37.4 bits), Expect = 5.0e-29, Sum P(4) = 5.0e-29
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 497 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 539
Score = 75 (31.5 bits), Expect = 5.0e-29, Sum P(4) = 5.0e-29
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + + +Y+V++TTY+
Sbjct: 552 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 608
Score = 60 (26.2 bits), Expect = 5.0e-29, Sum P(4) = 5.0e-29
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621
+++ +LRR K + LPPK + S+++ Y L + LKK
Sbjct: 717 IIKPFILRRVKEEVLK-----QLPPKKDQIELCAMSEKQEQLYLGL-FNRLKK-----SI 765
Query: 622 GTVNQNYANILLMLLRLRQACDHPLLVKEY 651
+ +N + ++++LR+ +HPLL ++Y
Sbjct: 766 NNMEKN-TEMCNVMMQLRKMANHPLLHRQY 794
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 280 (103.6 bits), Expect = 5.6e-29, Sum P(5) = 5.6e-29
Identities = 60/149 (40%), Positives = 85/149 (57%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
++++F+Q T++LD++E LN H Y RLDG + R + FNTD ITV ++S ++
Sbjct: 1264 RALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRS 1323
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ A VI D WNP + Q DR HRIGQTR V + R T+E ILK
Sbjct: 1324 GGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKA 1383
Query: 939 DDKRKMVASAFGE-DQGGGTASRLTVEDL 966
+ KR++ E D S+L+V DL
Sbjct: 1384 NQKRQLDNVVIQEGDFTTDYFSKLSVRDL 1412
Score = 87 (35.7 bits), Expect = 5.6e-29, Sum P(5) = 5.6e-29
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 262 VEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
V+ +P LL NL +QK L W+ H GILAD+ GLGKTI I+L+
Sbjct: 684 VDVPVPS-LLRGNLRTYQKQGLNWLASLYNN--HT-NGILADEMGLGKTIQTISLL 735
Score = 76 (31.8 bits), Expect = 5.6e-29, Sum P(5) = 5.6e-29
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
KL VLR +LRR K ++ Q +P K + SK + Y S + + KA
Sbjct: 920 KLHQVLRPYLLRRLKAD-VEKQ----MPAKYEHIVYCKLSKRQRFLYDDFMSRA--QTKA 972
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLL 647
+G N+ +I+ L++LR+ C+HP L
Sbjct: 973 TLASG----NFMSIVNCLMQLRKVCNHPNL 998
Score = 58 (25.5 bits), Expect = 5.6e-29, Sum P(5) = 5.6e-29
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 760 DKSGILDNEYISSKIRTVLD---ILHTQCELNTKCSIVEIHDLA-GSNGSSAV 808
DKS I+DNE I VLD I+ T L +++ LA G N S+V
Sbjct: 1153 DKSSIIDNELIKPLQTRVLDNRKIIDTFAVLTPSAVSLDMRKLALGLNDDSSV 1205
Score = 55 (24.4 bits), Expect = 5.0e-27, Sum P(6) = 5.0e-27
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLRAIMLR 569
W +VLDEA IKN R+ +A + +R + P+ N +L ++L +M +
Sbjct: 818 WQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNN----LAELWSLLYFLMPQ 873
Query: 570 RTKGTFIDGQPI 581
T IDG+ +
Sbjct: 874 ----TVIDGKKV 881
Score = 54 (24.1 bits), Expect = 5.6e-29, Sum P(5) = 5.6e-29
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425
L+V P SVL W E + P VL Y+G + +
Sbjct: 749 LIVVPTSVLLNWEMEFKRFAP---GFKVLTYYGSPQQR 783
Score = 42 (19.8 bits), Expect = 5.0e-27, Sum P(6) = 5.0e-27
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 604 YKKLESDSLKKFKAFADAGTVNQNYANILLML 635
YK +E LK FK V+ ++ N++ L
Sbjct: 1018 YKDVERTLLKLFKKNNQVNRVDLDFLNLVFTL 1049
Score = 40 (19.1 bits), Expect = 2.5e-25, Sum P(5) = 2.5e-25
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 596 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 634
F ++ W + E+ ++K F++ +N N LL+
Sbjct: 813 FKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLL 851
Score = 39 (18.8 bits), Expect = 4.0e-24, Sum P(5) = 4.0e-24
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 232 YRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
+ S S++ + G+E IY ++ E+ +Q + + D SV L
Sbjct: 560 HESSSSESSVMTGEESSIYSSS-ENESQNENDRESDDKTPSVGL 602
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 278 (102.9 bits), Expect = 7.8e-29, Sum P(4) = 7.8e-29
Identities = 57/134 (42%), Positives = 84/134 (62%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD +I V L+S KAG
Sbjct: 874 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGG 933
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQT+ V V +L + T+E+ +LK+
Sbjct: 934 LGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQ 993
Query: 941 KRKMVASAFGEDQG 954
K K+ D+G
Sbjct: 994 KLKLEQDMTTVDEG 1007
Score = 92 (37.4 bits), Expect = 7.8e-29, Sum P(4) = 7.8e-29
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 536
Score = 73 (30.8 bits), Expect = 7.8e-29, Sum P(4) = 7.8e-29
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + Y+V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
Score = 59 (25.8 bits), Expect = 7.8e-29, Sum P(4) = 7.8e-29
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621
+++ +LRR K + LPPK + S+++ Y L + LKK
Sbjct: 714 IIKPFILRRVKEEVLK-----QLPPKKDRIELCAMSEKQEQLYLGL-FNRLKK-----SI 762
Query: 622 GTVNQNYANILLMLLRLRQACDHPLLVKEY 651
+ +N + ++++LR+ +HPLL ++Y
Sbjct: 763 NNLEKN-TEMCNVMMQLRKMANHPLLHRQY 791
Score = 41 (19.5 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 445 NEVPKQPSVDEEEAD-EKNGETYGLSSEFSV------NKKRKK 480
+EVP V + KN L +FS+ NKKRKK
Sbjct: 304 SEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKK 346
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 274 (101.5 bits), Expect = 8.1e-29, Sum P(4) = 8.1e-29
Identities = 55/124 (44%), Positives = 81/124 (65%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD +I V L+S KAG
Sbjct: 869 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGG 928
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQT+ V V +L + T+E+ +LK+
Sbjct: 929 LGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQ 988
Query: 941 KRKM 944
K K+
Sbjct: 989 KLKL 992
Score = 92 (37.4 bits), Expect = 8.1e-29, Sum P(4) = 8.1e-29
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 489 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 531
Score = 75 (31.5 bits), Expect = 8.1e-29, Sum P(4) = 8.1e-29
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTYS 441
L+V PAS + W RE+ P +L+VL Y+G + + Y+V++TTY+
Sbjct: 544 LIVVPASTIDNWLREVNLWCP---SLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 600
Score = 61 (26.5 bits), Expect = 8.1e-29, Sum P(4) = 8.1e-29
Identities = 24/109 (22%), Positives = 53/109 (48%)
Query: 547 PISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINL-PPKTISLTKVDFSKEEWA 602
P S++ +++ + +++ +LRR K + ++ L PPK + S+++
Sbjct: 691 PADEQSIYEKERIAHAKQIIKPFILRRVK------EEVLKLLPPKKDRIELCAMSEKQEQ 744
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 651
Y L + LKK + +N + ++++LR+ +HPLL ++Y
Sbjct: 745 LYSGL-FNRLKK-----SINNLEKN-TEMCNVMMQLRKMANHPLLHRQY 786
Score = 47 (21.6 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 434 DVVLTTYSIVTN--EVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
DV + S VTN EV + + + K + + + NKKRKK
Sbjct: 293 DVQCASQSEVTNGKEVARNQNYSKNATKIKMKQKISVKPQNGFNKKRKK 341
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 274 (101.5 bits), Expect = 8.2e-29, Sum P(4) = 8.2e-29
Identities = 55/124 (44%), Positives = 81/124 (65%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD +I V L+S KAG
Sbjct: 872 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGG 931
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQT+ V V +L + T+E+ +LK+
Sbjct: 932 LGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQ 991
Query: 941 KRKM 944
K K+
Sbjct: 992 KLKL 995
Score = 92 (37.4 bits), Expect = 8.2e-29, Sum P(4) = 8.2e-29
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 492 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 534
Score = 74 (31.1 bits), Expect = 8.2e-29, Sum P(4) = 8.2e-29
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTYS 441
L+V PAS + W RE+ P L+VL Y+G + + Y+V++TTY+
Sbjct: 547 LIVVPASTIDNWLREVNLWCP---TLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 603
Score = 62 (26.9 bits), Expect = 8.2e-29, Sum P(4) = 8.2e-29
Identities = 24/109 (22%), Positives = 53/109 (48%)
Query: 547 PISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINL-PPKTISLTKVDFSKEEWA 602
P S++ +++ + +++ +LRR K + ++ L PPK + S+++
Sbjct: 694 PADEQSIYEKERIAHAKQIIKPFILRRVK------EEVLKLLPPKKDQIELCAMSEKQEQ 747
Query: 603 FYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 651
Y L + LKK + +N + ++++LR+ +HPLL ++Y
Sbjct: 748 LYSGL-FNRLKK-----SINNLEKN-TEMCNVMMQLRKMANHPLLHRQY 789
Score = 52 (23.4 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 434 DVVLTTYSIVTN--EVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
DV + S VTN EV + + + A K + + + NKKRKK
Sbjct: 296 DVQCASQSEVTNGKEVARNQNYSKNAAKIKMKQKISMKPQNGFNKKRKK 344
Score = 42 (19.8 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 21/97 (21%), Positives = 43/97 (44%)
Query: 735 VFS-KTTLKNCVSDDGG--GSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKC 791
VF+ K +++ D G GS D ++ ++++ Y + + D + L KC
Sbjct: 346 VFNPKKAVEDSEYDSGSDAGSSLDEDYSSCEEVMEDGYKGKILHFLQDASIGELTLIPKC 405
Query: 792 S---IVEIHDLAGSNGSSAVHSK-SPIEGPIKSIVFS 824
S +I +L N + +K S I G + ++++
Sbjct: 406 SQKKAQKIIELRPFNNWETLFTKMSKINGLSEDLIWN 442
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 233 (87.1 bits), Expect = 8.9e-29, Sum P(4) = 8.9e-29
Identities = 53/153 (34%), Positives = 90/153 (58%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQ-YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG 879
++F+Q+ M ++++N L +H Q L+G++ RD+ ++ F + ++SLKAG
Sbjct: 770 LIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQNGT-YDIFILSLKAG 828
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
GLN+ AA+HVI D WWNP E+QA DRA+RIGQ R V V +L T+E++I ++ +
Sbjct: 829 GTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDEMLE 888
Query: 940 DKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972
K+ + + D + L+ ++L+ L V
Sbjct: 889 RKQSLNNAVITSDSW---MTELSTDELKELLGV 918
Score = 111 (44.1 bits), Expect = 8.9e-29, Sum P(4) = 8.9e-29
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 547 PISRNSLHGYKKLQAVLRAI---MLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 603
PI ++ G K+Q V R I +LRRTK D +NLP K + E+ +
Sbjct: 641 PIEKDRDEG--KIQQVQRFISPFLLRRTKK---DQTVALNLPDKQEQKAYCPLTGEQASL 695
Query: 604 YKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL-VKEYDFDSVGKISGE 662
Y++L D+L+ + + G + + ILLML +L+Q C+HP L +KE + +
Sbjct: 696 YEQLVQDTLQNVEGLS--GIERRGF--ILLMLNKLKQICNHPALYLKETEPKDI------ 745
Query: 663 MAKRLPRDMLIDLLSRLETSSAICCV 688
+ + + L++L+ ++ + C +
Sbjct: 746 IERSMKTSTLMELIENIKDQNESCLI 771
Score = 88 (36.0 bits), Expect = 8.9e-29, Sum P(4) = 8.9e-29
Identities = 33/97 (34%), Positives = 51/97 (52%)
Query: 249 IYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
++Q L + PKV+ +P L L +Q+ + W+L R L G +LADD GLG
Sbjct: 428 LFQKLLHIGDIPKVD--VPSSL-HATLRPYQQHGIEWLLY--LRKLG-FGALLADDMGLG 481
Query: 309 KTISIIA-LIQM-QRSLQSK-----SKTEVLGNQKTE 338
K+I I L+ + + +LQ+ + T VLGN + E
Sbjct: 482 KSIQTITYLLYIKENNLQTGPALIVAPTSVLGNWQKE 518
Score = 84 (34.6 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVE--LAKYDVVLTTYSI 442
L+V P SVL W +E E P+ L V +++G +R K + + L DVVLT+Y++
Sbjct: 504 LIVAPTSVLGNWQKEFERFAPN---LRVQLHYGSNRAKGESFKDFLQSADVVLTSYAL 558
Score = 70 (29.7 bits), Expect = 8.9e-29, Sum P(4) = 8.9e-29
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA 539
L+ + W V+LDEAQ IKN T+ ++A +L+A
Sbjct: 566 LSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQA 598
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 270 (100.1 bits), Expect = 9.6e-29, Sum P(5) = 9.6e-29
Identities = 68/196 (34%), Positives = 111/196 (56%)
Query: 755 DSPFADKSGILDNEYISSKIRTVLDI-LHTQCELNTKCSIVEI--HDLAGSNGS-SAVHS 810
+ +ADK +++S + + DI +H CE +C+ + LA +G +
Sbjct: 706 EKAYADKKW----QHVSEDLAWLSDIKIHQLCE-RFRCTSKFLLNEQLALKSGKCEQLDV 760
Query: 811 KSP-IEGP-IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE 868
P I+ K ++FSQ+T MLD++E LN Y+RLDG + R + +FN ++
Sbjct: 761 MLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKD 820
Query: 869 ITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928
+ V L+S +AG LG+N+ +A+H+I+ D+ +NP + QA DR HR+GQ +PV VTRL +
Sbjct: 821 LFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKG 880
Query: 929 TVEDRILKLQDDKRKM 944
TVE +L L K ++
Sbjct: 881 TVEVGMLALAKKKLQL 896
Score = 85 (35.0 bits), Expect = 9.6e-29, Sum P(5) = 9.6e-29
Identities = 31/111 (27%), Positives = 59/111 (53%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++ +A+L+ +LRR K Q + +LP K+ + +V+ K + K+L + ++ +
Sbjct: 611 EEAKAILQPYILRRLKN-----QVLGSLPSKSEQIIEVEMKKPQ----KQLYDNIVEALQ 661
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVK-EYDFDSVGKISGEMAKR 666
++G +Y + L+RLRQA +HPLL + EY + KI+ + R
Sbjct: 662 QSEESG---DSYGS----LMRLRQAANHPLLRRSEYTDQKLDKIAKMLCLR 705
Score = 75 (31.5 bits), Expect = 9.6e-29, Sum P(5) = 9.6e-29
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 278 HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSL 323
+Q I + W++ + L+ IL D+ GLGKTI I+A + + +
Sbjct: 397 YQLIGVKWLIMMYNKDLNA---ILGDEMGLGKTIQIVAFLSYLKQI 439
Score = 73 (30.8 bits), Expect = 9.6e-29, Sum P(5) = 9.6e-29
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS----RTKDPVELAK--YDVVLTTYS 441
L+V P+S + W E P ++ +L Y+G + V+ K DV+LTTY+
Sbjct: 446 LIVVPSSTIENWIGEFHKWCP---SIQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYN 502
Query: 442 IVTNE 446
+VT++
Sbjct: 503 MVTSK 507
Score = 38 (18.4 bits), Expect = 9.6e-29, Sum P(5) = 9.6e-29
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLRAI 566
V+ DE +KN ++ R ++ K+ + P+ N + + VL +
Sbjct: 522 VIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKV 575
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 258 (95.9 bits), Expect = 1.0e-28, Sum P(5) = 1.0e-28
Identities = 54/153 (35%), Positives = 91/153 (59%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS-LPARDRAVKDFNTDREITVMLMSLK 877
++++FSQ +MLD++E L + RLDGT++ L R++ + F TD+ T+ L++ +
Sbjct: 493 RTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQ 552
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
G +G+ + A+ V++ D WNP T+ QAVDRA+RIGQT V + RL TVE++I +
Sbjct: 553 VGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRR 612
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
Q K ++ G+ + + ++LR LF
Sbjct: 613 QVFKDSLIRQTTGDKKN--PFRYFSKQELRELF 643
Score = 91 (37.1 bits), Expect = 1.0e-28, Sum P(5) = 1.0e-28
Identities = 45/162 (27%), Positives = 69/162 (42%)
Query: 158 VENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGK 217
+E+ N ++ D FG L T Y D Y +K + + N LP +L +
Sbjct: 1 MESNNVEEVTDKFGGCLSL---DTEKMGKY--DRYRQKGKEAAL----NGELPRALELFQ 51
Query: 218 SVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLK 277
Q PS+ + A + + ++ + E +N L GL L
Sbjct: 52 LAYQLQ---PSEKLKKRIQAIQDLIQREDEEDEEEEEEFVNVNNSGLKLYKGLYD-KLYD 107
Query: 278 HQK--IALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
HQK +A + L ++ R GGILADD GLGKTI +I+ +
Sbjct: 108 HQKEGVAFLYSLYRDGRK----GGILADDMGLGKTIQVISFL 145
Score = 83 (34.3 bits), Expect = 1.0e-28, Sum P(5) = 1.0e-28
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD----VVLTTYSI 442
TL+V P S+++ W RE P + V +HG S+T+ L + V++TTY +
Sbjct: 157 TLLVMPTSLIKNWVREFAKWTP---GMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQM 213
Query: 443 VTN 445
+ N
Sbjct: 214 LIN 216
Score = 61 (26.5 bits), Expect = 1.0e-28, Sum P(5) = 1.0e-28
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRN 551
W V+LDEA IK T+ A++ ++ AK + P+ N
Sbjct: 231 WDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNN 272
Score = 60 (26.2 bits), Expect = 1.0e-28, Sum P(5) = 1.0e-28
Identities = 17/83 (20%), Positives = 35/83 (42%)
Query: 601 WAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS 660
W + ++ D KF + + + L L L++ CDHP L+ + +G
Sbjct: 384 WTYLSSVQEDIYNKFISLDQIKELLTTTRSPLAELTVLKKLCDHPRLLSQRAVIQLGLER 443
Query: 661 GEMAKRLPRDMLIDLLSRLETSS 683
G ++ + D +S+++ S
Sbjct: 444 GSDSELVHSDESESAVSQIDNIS 466
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 266 (98.7 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 58/136 (42%), Positives = 85/136 (62%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T +LD++E L +Y RLDG + R + +FNTD +I V L+S KAG
Sbjct: 811 VLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHLIDEFNTDMDIFVFLLSTKAGG 870
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA DR HR+GQTR V V +L + T+E+ +LK+
Sbjct: 871 LGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTREVKVIKLISKGTIEESMLKMNQQ 930
Query: 941 KRK----MVASAFGED 952
K K M A+ GE+
Sbjct: 931 KLKLEQDMTAADLGEE 946
Score = 92 (37.4 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S+ L +QKI L W+ H L GILAD+ GLGKTI IA +
Sbjct: 430 SLELKPYQKIGLNWLALLHK---HGLNGILADEMGLGKTIQAIAFL 472
Score = 71 (30.1 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-------RTKDPVELAKYDVVLTTY 440
L+V PAS L W RE+ P+ L+VL Y+ GS R + ++V++TTY
Sbjct: 485 LIVVPASTLDNWIREVNLWCPE---LNVLFYYVGSQEDRKHLRADISNRVVDFNVIVTTY 541
Query: 441 S 441
+
Sbjct: 542 N 542
Score = 70 (29.7 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 27/105 (25%), Positives = 47/105 (44%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621
+++ +LRR K + LPPK + S+++ ++L D L K K
Sbjct: 651 IIKPFILRRVKDEVLK-----QLPPKKDHIELCAMSEKQ----EQLYCDLLNKLKKTMKG 701
Query: 622 GTVNQNYANILLMLLRLRQACDHPLLVKEY-DFDSVGKISGEMAK 665
N + N ++ +LR+ +HPLL + Y D + +S M K
Sbjct: 702 NEKNSDMGNAMM---QLRKMANHPLLHRHYYTADKLKTMSKLMLK 743
>UNIPROTKB|E2R8G0 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
OMA:FEGLVKQ EMBL:AAEX03000243 EMBL:AAEX03000244 RefSeq:XP_533438.2
Ensembl:ENSCAFT00000000517 GeneID:476233 KEGG:cfa:476233
Uniprot:E2R8G0
Length = 1685
Score = 211 (79.3 bits), Expect = 1.4e-28, Sum P(7) = 1.4e-28
Identities = 50/153 (32%), Positives = 87/153 (56%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K++VFS W +LD++ +L + +++ ++ + A F D +I ++L+ L
Sbjct: 1532 KALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSA---FKHDPQINILLLPLHT 1588
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI-LKL 937
G+ GL ++ A+HV+L++ NP E QA+ R HRIGQT+P V R I+ T+E+R+ L
Sbjct: 1589 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1648
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ ++ +S+ + AS LT+ DL LF
Sbjct: 1649 KTAEKSHTSSSVKHPE----ASVLTLADLADLF 1677
Score = 98 (39.6 bits), Expect = 1.4e-28, Sum P(7) = 1.4e-28
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 720 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 778
Query: 445 NEV 447
+E+
Sbjct: 779 SEL 781
Score = 91 (37.1 bits), Expect = 1.4e-28, Sum P(7) = 1.4e-28
Identities = 31/100 (31%), Positives = 47/100 (47%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKK 614
L + + I+ R K ID I +PP+T + + FS E FY + D++ K
Sbjct: 894 LYSFIAKILWRSAKKDVIDQ---IQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDAVVK 950
Query: 615 FKAFAD-----AGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +D + + +IL LLRLRQAC HP V+
Sbjct: 951 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVR 990
Score = 82 (33.9 bits), Expect = 1.4e-28, Sum P(7) = 1.4e-28
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 369 LGGILADEMGLGKTVEVLALI 389
Score = 58 (25.5 bits), Expect = 1.4e-28, Sum P(7) = 1.4e-28
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 506 PLAKVGWFRVVLDEAQTIK 524
PL V W+R+ LDEAQ ++
Sbjct: 809 PLVAVEWWRICLDEAQMVE 827
Score = 56 (24.8 bits), Expect = 1.4e-28, Sum P(7) = 1.4e-28
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 660 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 711
+ ++ K+L + + + L + + TS I C +C+ + V CGH FC +C S
Sbjct: 1402 TSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECIS 1460
Score = 45 (20.9 bits), Expect = 1.4e-28, Sum P(7) = 1.4e-28
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 247 RLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ + Q ++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 QFVKQTHQQETQSIQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 321
>UNIPROTKB|Q149N8 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0000786 "nucleosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786 EMBL:AL356599 KO:K15710
EMBL:AY161136 EMBL:AY163808 EMBL:CR749290 EMBL:AL451145
EMBL:BC113089 EMBL:BC117685 EMBL:BC117686 EMBL:AK075318
EMBL:AK094944 EMBL:AB095943 IPI:IPI00470931 IPI:IPI00746978
IPI:IPI00845433 IPI:IPI00845497 RefSeq:NP_001036148.2
RefSeq:NP_775105.1 UniGene:Hs.723297 ProteinModelPortal:Q149N8
SMR:Q149N8 DIP:DIP-46277N IntAct:Q149N8 MINT:MINT-1370426
STRING:Q149N8 PhosphoSite:Q149N8 DMDM:146325723 PaxDb:Q149N8
PRIDE:Q149N8 Ensembl:ENST00000275233 Ensembl:ENST00000367505
Ensembl:ENST00000438092 Ensembl:ENST00000519632 GeneID:257218
KEGG:hsa:257218 UCSC:uc003qle.3 UCSC:uc003qlf.3 UCSC:uc003qlj.1
CTD:257218 GeneCards:GC06M146185 HGNC:HGNC:19336 HPA:HPA034854
MIM:608048 neXtProt:NX_Q149N8 PharmGKB:PA134880315
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ GenomeRNAi:257218
NextBio:92973 ArrayExpress:Q149N8 Bgee:Q149N8 Genevestigator:Q149N8
Uniprot:Q149N8
Length = 1683
Score = 215 (80.7 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 52/153 (33%), Positives = 86/153 (56%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K++VFS W +LD++ +L + +++ ++ + A F D +I ++L+ L
Sbjct: 1530 KALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSA---FKRDPQINILLLPLHT 1586
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI-LKL 937
G+ GL ++ A+HV+L++ NP E QA+ R HRIGQT+P V R I+ T+E+R+ L
Sbjct: 1587 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1646
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ +R S+ + AS LTV DL LF
Sbjct: 1647 KTAERSHTNSSAKHSE----ASVLTVADLADLF 1675
Score = 98 (39.6 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 445 NEV 447
+E+
Sbjct: 777 SEL 779
Score = 88 (36.0 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 31/100 (31%), Positives = 46/100 (46%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKK 614
L + + I+ R K ID I +PP+T + + FS E FY + D + K
Sbjct: 892 LYSFIAKILWRSAKKDVIDQ---IQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948
Query: 615 FKAFAD-----AGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +D + + +IL LLRLRQAC HP V+
Sbjct: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVR 988
Score = 82 (33.9 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 367 LGGILADEMGLGKTVEVLALI 387
Score = 58 (25.5 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 506 PLAKVGWFRVVLDEAQTIK 524
PL V W+R+ LDEAQ ++
Sbjct: 807 PLVAVEWWRICLDEAQMVE 825
Score = 55 (24.4 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 660 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 711
+ ++ K+L + + + L + + TS + C +C+ + V CGH FC +C S
Sbjct: 1400 TSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECIS 1458
Score = 46 (21.3 bits), Expect = 1.5e-24, Sum P(6) = 1.5e-24
Identities = 18/84 (21%), Positives = 36/84 (42%)
Query: 251 QAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKT 310
Q+ +E+ ++ + + + H K +KE S+ C GIL + G+
Sbjct: 127 QSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSI-CDKGILVESSFSGEM 185
Query: 311 ISIIALIQMQRSLQSKSKTEVLGN 334
+ + +Q +R ++ K E GN
Sbjct: 186 LEDLGWLQKKRRIKLYQKPE--GN 207
Score = 44 (20.5 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 249 IYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ Q ++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 VKQTHQQETQSIQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 319
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 262 (97.3 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 64/158 (40%), Positives = 91/158 (57%)
Query: 819 KSIVFSQWTRMLDLVENSLNQH---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
++++F Q MLD+VEN L + + + RLDG+ R V+ FN D I V+L++
Sbjct: 1688 RALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLT 1747
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
K G LGLN+ A VI ++ WNP + QA+DRAHR+GQ + V V RL +DT+E++I+
Sbjct: 1748 TKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIM 1807
Query: 936 KLQDDKRKM-VASAFGEDQGGGTASRLTVEDLRYLFMV 972
LQ K KM +AS Q G S + L LF V
Sbjct: 1808 GLQ--KFKMNIASTIVNQQNAGLQS-MDTNQLLDLFDV 1842
Score = 103 (41.3 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV--ELAKYDVVLTTYSIVT 444
+LV+CP S++ W +E+ P + VL+Y G + P+ ++ DVV+T+Y +
Sbjct: 1365 SLVICPPSLIGHWEQEINQYAP---FMKVLVYAGSPSIRIPLRGQIPDADVVVTSYDVCR 1421
Query: 445 NEVPKQPSVDEEEADEKNGETY-GLSSEFSVNKKRKK 480
N+V D G SS+ S + KR K
Sbjct: 1422 NDVESLTKHDYNYCVLDEGHIIKNASSKLSKSVKRVK 1458
Score = 81 (33.6 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTE 330
+ L K+Q+ + W+ LH GIL DD GLGKT+ I ++ ++ ++ E
Sbjct: 1298 IKATLRKYQQEGVNWLAFLNKYHLH---GILCDDMGLGKTLQTICIVSSDHHIREENFKE 1354
Score = 68 (29.0 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 24/100 (24%), Positives = 39/100 (39%)
Query: 567 MLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ 626
MLRR K + +LPPK I + S + YK + K G+ +
Sbjct: 1534 MLRRLKEDVLS-----DLPPKIIQDYYCELSDLQKKLYKDFAKTQKETIKTDVQ-GSEKE 1587
Query: 627 NYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 666
++ L +R+ C+HP LV +I+ + R
Sbjct: 1588 GKTHVFQALQYMRKLCNHPALVMSEQHPKYAEINQFLISR 1627
Score = 48 (22.0 bits), Expect = 6.5e-23, Sum P(4) = 6.5e-23
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSL 553
L K + VLDE IKN ++++++ ++A+ I PI N L
Sbjct: 1427 LTKHDYNYCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPIQNNVL 1475
Score = 48 (22.0 bits), Expect = 1.4e-19, Sum P(4) = 1.4e-19
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSS 470
L +DV +T + + +P+ P V + EA+ G +GL +
Sbjct: 853 LQLFDVFVTAAKLSPSRIPQIPVVVQGEAEAGPG-AFGLET 892
>UNIPROTKB|K4DI94 [details] [associations]
symbol:SHPRH "SNF2 histone linker PHD RING helicase,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000786 "nucleosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00490 SMART:SM00526 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 EMBL:AL356599 EMBL:AL451145 HGNC:HGNC:19336
OMA:FEGLVKQ Ensembl:ENST00000367503 Uniprot:K4DI94
Length = 1687
Score = 215 (80.7 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 52/153 (33%), Positives = 86/153 (56%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K++VFS W +LD++ +L + +++ ++ + A F D +I ++L+ L
Sbjct: 1534 KALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSA---FKRDPQINILLLPLHT 1590
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI-LKL 937
G+ GL ++ A+HV+L++ NP E QA+ R HRIGQT+P V R I+ T+E+R+ L
Sbjct: 1591 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1650
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ +R S+ + AS LTV DL LF
Sbjct: 1651 KTAERSHTNSSAKHSE----ASVLTVADLADLF 1679
Score = 98 (39.6 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 445 NEV 447
+E+
Sbjct: 777 SEL 779
Score = 88 (36.0 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 31/100 (31%), Positives = 46/100 (46%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKK 614
L + + I+ R K ID I +PP+T + + FS E FY + D + K
Sbjct: 892 LYSFIAKILWRSAKKDVIDQ---IQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948
Query: 615 FKAFAD-----AGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +D + + +IL LLRLRQAC HP V+
Sbjct: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVR 988
Score = 82 (33.9 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 367 LGGILADEMGLGKTVEVLALI 387
Score = 58 (25.5 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 506 PLAKVGWFRVVLDEAQTIK 524
PL V W+R+ LDEAQ ++
Sbjct: 807 PLVAVEWWRICLDEAQMVE 825
Score = 55 (24.4 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 660 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 711
+ ++ K+L + + + L + + TS + C +C+ + V CGH FC +C S
Sbjct: 1404 TSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECIS 1462
Score = 46 (21.3 bits), Expect = 1.6e-24, Sum P(6) = 1.6e-24
Identities = 18/84 (21%), Positives = 36/84 (42%)
Query: 251 QAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKT 310
Q+ +E+ ++ + + + H K +KE S+ C GIL + G+
Sbjct: 127 QSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSI-CDKGILVESSFSGEM 185
Query: 311 ISIIALIQMQRSLQSKSKTEVLGN 334
+ + +Q +R ++ K E GN
Sbjct: 186 LEDLGWLQKKRRIKLYQKPE--GN 207
Score = 44 (20.5 bits), Expect = 1.6e-28, Sum P(7) = 1.6e-28
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 249 IYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ Q ++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 VKQTHQQETQSIQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 319
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 252 (93.8 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 53/125 (42%), Positives = 79/125 (63%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ TR+LD++E+ +Y RLDG AR++A+ FN + ++S +AG
Sbjct: 465 LIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAG 524
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VIL D WNP + QA+DRAHRIGQ +PV V RL +TVE+RI++ +
Sbjct: 525 GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVEERIVERAE 584
Query: 940 DKRKM 944
K ++
Sbjct: 585 MKLRL 589
Score = 86 (35.3 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L AVLR +LRR K ++ +LPPK + SK + +Y ++ +K
Sbjct: 344 ERLHAVLRPFLLRRIKAE-VEK----SLPPKKEVKIYLGLSKMQREWYTRI---LMKDID 395
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 396 ILNSAGKMDK--MRLLNILMQLRKCCNHPYL 424
Score = 83 (34.3 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 245 DERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADD 304
DE L+ ++ D + E + P + + L +Q L WM+ ++ GILAD+
Sbjct: 114 DEELLSESRKADNVLVRFEES-PSYIKNGTLRDYQIRGLNWMISLYENGIN---GILADE 169
Query: 305 QGLGKTISIIALI 317
GLGKT+ IAL+
Sbjct: 170 MGLGKTLQTIALL 182
Score = 65 (27.9 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTYSIVT 444
+V+ P S L W E + VP A+ LI + R +D + ++DV +T+Y +V
Sbjct: 196 MVLVPKSTLHNWMNEFKRWVPTLKAVC-LIGNKDERAAFIRDVMMPGEWDVCVTSYEMVI 254
Query: 445 NE 446
E
Sbjct: 255 RE 256
Score = 55 (24.4 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLH 554
K W +V+DEA IKN +++++ + + P+ +N+LH
Sbjct: 262 KFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPL-QNNLH 308
Score = 49 (22.3 bits), Expect = 5.4e-25, Sum P(5) = 5.4e-25
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 134 QQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYV 193
+Q K+ L + T+ + E ++ S+ D + PS + + G +RDY +
Sbjct: 91 KQDEKQNLLSVGDNRHRRTEQEEDEELLSESRKADNVLVRFE-ESPSYIKN-GTLRDYQI 148
Query: 194 KKNDDDIMMYEG--NRILPSSLMHGKSV 219
+ + I +YE N IL + GK++
Sbjct: 149 RGLNWMISLYENGINGILADEMGLGKTL 176
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 288 (106.4 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 60/130 (46%), Positives = 86/130 (66%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++SQ T+M+DL+E + +Y RLDG+ + AR V DF T +I V L+S +AG
Sbjct: 1176 LIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGG 1235
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ AA VI D WNPT + QA+DRAHR+GQT+ VTV RL + T+E+RIL+ +
Sbjct: 1236 LGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRARE 1295
Query: 941 K---RKMVAS 947
K ++MV S
Sbjct: 1296 KSEIQRMVIS 1305
Score = 80 (33.2 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 251 QAALEDLN-QPKVEAT-LPDGLLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGL 307
Q ++ED+ +P+ E LP + LK +I + W+ + + GILAD+ GL
Sbjct: 508 QESVEDIKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGI---SGILADEMGL 564
Query: 308 GKTISIIALI 317
GKT+ IA +
Sbjct: 565 GKTVQSIAFL 574
Score = 67 (28.6 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-------DPVEL----AKYDVV 436
LV+ PAS L W +E+ VPD V+ Y G + D L A + VV
Sbjct: 588 LVISPASTLHNWQQEMSRFVPD---FKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVV 644
Query: 437 LTTYSIVTNE 446
+T+Y +V ++
Sbjct: 645 ITSYQLVVSD 654
Score = 63 (27.2 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 23/99 (23%), Positives = 47/99 (47%)
Query: 558 KLQAVLRAIMLRRTK----GTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 613
+L +L+ MLRR K D I+ P TI K+ + A +K+ + L
Sbjct: 751 RLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTIR-QKLLYR----ALKQKIRIEDLL 805
Query: 614 KFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
+ + + + + +N++ ++++ R+ C+HP L + D
Sbjct: 806 HLTSGSTTTSSSSSASNLMNLVMQFRKVCNHPELFERRD 844
Score = 51 (23.0 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQ 529
++ W +VLDEAQ IK+ +Q
Sbjct: 660 RIKWQYMVLDEAQAIKSAASQ 680
Score = 45 (20.9 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 601 WAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS 660
W K ES L++ K+ N+ +L R+ C + + + + K +
Sbjct: 314 WQIMSKKESGRLQRIKS--------NNHKEMLANCKRVAGMCAKVVRQRAINSQRIMKET 365
Query: 661 GEMAKRLPRDML 672
AKRL R+ML
Sbjct: 366 VWRAKRLTREML 377
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 286 (105.7 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 60/130 (46%), Positives = 84/130 (64%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++SQ TRM+DL+E + Y RLDG+ + R V DF T +I V L+S +AG
Sbjct: 1118 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGG 1177
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ AA VI D WNPT + QA+DRAHR+GQT+ VTV RL + T+E+RIL+ +
Sbjct: 1178 LGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1237
Query: 941 K---RKMVAS 947
K ++MV S
Sbjct: 1238 KSEIQRMVIS 1247
Score = 72 (30.4 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 257 LNQPKVEA--TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
L P + A +P + LK +Q + W+ + ++ GILAD+ GLGKT+
Sbjct: 499 LANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 555
Query: 314 IALI 317
IAL+
Sbjct: 556 IALL 559
Score = 71 (30.1 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPV---ELAKYDVVLTTYSI 442
L++ PAS L W +E VP VL Y G R K + A + VV+T+Y +
Sbjct: 573 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKKKKTLYTQDAPFHVVITSYQL 629
Query: 443 VTNEV 447
V +V
Sbjct: 630 VVQDV 634
Score = 59 (25.8 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 26/111 (23%), Positives = 50/111 (45%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K I N L +L +L+ MLRR K ++ + L K L + + Y
Sbjct: 720 KSAIDENQL---SRLHMILKPFMLRRIKKD-VENE----LSDKIEILMYCQLTSRQKLLY 771
Query: 605 KKLESD-SLKKFKAFADAGTVN-QNYANILL-MLLRLRQACDHPLLVKEYD 652
+ L++ S++ + T QN + L+ ++++ R+ C+HP L + +
Sbjct: 772 QALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 822
Score = 53 (23.7 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 120 IANVASADYEKISSQ-QALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDT------FG 171
+ N+ DY+ + QALK A+ H T+S + ++ +R FG
Sbjct: 436 VVNITQEDYDSNHFKAQALKNAENAY-HIHQARTRSFDEDAKESRAAALRAADKSGSGFG 494
Query: 172 NAYHLAGPS 180
+Y LA PS
Sbjct: 495 ESYSLANPS 503
Score = 47 (21.6 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 509 KVGWFRVVLDEAQTIKN 525
+V W +VLDEAQ +K+
Sbjct: 639 RVKWQYMVLDEAQALKS 655
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 233 (87.1 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 46/127 (36%), Positives = 82/127 (64%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++FSQ +RMLD++E+ + +Y R+DG+ R+ +++++N ++ L++ +AG
Sbjct: 601 LIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYNKPGSDLFAFLLTTRAG 660
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+ + A VIL D WNP + QA DRAHRIGQT+PVTV R +++E+++++ +
Sbjct: 661 GLGITLNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSMEEKMVEKAE 720
Query: 940 DKRKMVA 946
K ++ A
Sbjct: 721 MKLQLDA 727
Score = 93 (37.8 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 34/92 (36%), Positives = 46/92 (50%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKT-ISL-TKVDFSKEEWAFYKKLESDSLKKF 615
KL VLR +LRR K T ++ +LPPK I L + ++EW YK+L S L
Sbjct: 480 KLHKVLRPFLLRRIK-TEVEK----SLPPKKEIKLFVGLSTMQKEW--YKRLLSKDLDAV 532
Query: 616 KAFADAGTVNQNYANILLMLLRLRQACDHPLL 647
A T NI + +LR+AC+HP L
Sbjct: 533 VVGAKGNTGRVRLLNICM---QLRKACNHPYL 561
Score = 83 (34.3 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P + S + +Q L W++Q R ++ GILAD+ GLGKT+ I+L+
Sbjct: 268 PPYIKSGTMRDYQVYGLNWLIQLYERGIN---GILADEMGLGKTLQTISLL 315
Score = 81 (33.6 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE-----LAKYDVVLTTYSI 442
L++ P S L WA+E P L V+ +HG ++ ++ K+DV +TTY +
Sbjct: 329 LIIAPKSTLSGWAKEFTRWCP---FLRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEV 385
Query: 443 VTNE 446
E
Sbjct: 386 AIRE 389
Score = 53 (23.7 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAK-RSTIKIPISRNSLH 554
K W +++DEA IKN + +++ ++ R I +N+LH
Sbjct: 395 KFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLH 441
Score = 42 (19.8 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 152 TKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYE 204
TK+KS V ++SS + N + S V+S R + ++ +D+ +M E
Sbjct: 201 TKTKSPV--LSSSSASSSNNNNNNNNNGSIVSSTPTKRGHITEEAEDEAIMNE 251
>UNIPROTKB|E1BLB1 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:DAAA02026947 IPI:IPI00711948 Ensembl:ENSBTAT00000010673
Uniprot:E1BLB1
Length = 1688
Score = 209 (78.6 bits), Expect = 3.6e-28, Sum P(7) = 3.6e-28
Identities = 49/152 (32%), Positives = 83/152 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K++VFS W +LD++ +L + +++ ++ + A F D +I ++L+ L
Sbjct: 1535 KALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSA---FKYDPQINILLLPLHT 1591
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G+ GL ++ A+HV+L++ NP E QA+ R HRIGQT+P V R I+ T+E+R+ +
Sbjct: 1592 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1651
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ + + AS LTV DL LF
Sbjct: 1652 KTAERSHTNPSAKHS---EASVLTVADLADLF 1680
Score = 98 (39.6 bits), Expect = 3.6e-28, Sum P(7) = 3.6e-28
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 445 NEV 447
+E+
Sbjct: 782 SEL 784
Score = 91 (37.1 bits), Expect = 3.6e-28, Sum P(7) = 3.6e-28
Identities = 32/100 (32%), Positives = 46/100 (46%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKK 614
L + + IM R K ID I +PP+T + FS E FY + D++ K
Sbjct: 897 LYSFIAKIMWRSAKKDVIDQ---IQIPPQTEETHWLHFSPVERHFYHRQHEVCCQDAVVK 953
Query: 615 FKAFAD-----AGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +D + + +IL LLRLRQAC HP V+
Sbjct: 954 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVR 993
Score = 82 (33.9 bits), Expect = 3.6e-28, Sum P(7) = 3.6e-28
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 372 LGGILADEMGLGKTVEVLALI 392
Score = 58 (25.5 bits), Expect = 3.6e-28, Sum P(7) = 3.6e-28
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 506 PLAKVGWFRVVLDEAQTIK 524
PL V W+R+ LDEAQ ++
Sbjct: 812 PLVAVEWWRICLDEAQMVE 830
Score = 56 (24.8 bits), Expect = 3.6e-28, Sum P(7) = 3.6e-28
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 660 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 711
+ ++ K+L + + + L + + TS I C +C+ + V CGH FC +C S
Sbjct: 1405 TSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECIS 1463
Score = 43 (20.2 bits), Expect = 3.6e-28, Sum P(7) = 3.6e-28
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 237 ADERAVGGDERLIYQAALEDLNQP--KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+D G D +Y + Q ++ + L+ L +Q+ A+ WMLQ+E
Sbjct: 269 SDSEPEGQDIDELYHFVKQTHQQETRSIQVDVQHPALTPVLRPYQREAVNWMLQQE 324
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 282 (104.3 bits), Expect = 6.1e-28, Sum P(5) = 6.1e-28
Identities = 55/126 (43%), Positives = 84/126 (66%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ TRMLD++ + + + RLDG+MS R++ + FNTD ++ + L+S +A
Sbjct: 618 KVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRA 677
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ AA VI+ D WNP ++ QA DR HRIGQT+PV V RL +T++ +I++
Sbjct: 678 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 737
Query: 939 DDKRKM 944
KRK+
Sbjct: 738 AAKRKL 743
Score = 76 (31.8 bits), Expect = 6.1e-28, Sum P(5) = 6.1e-28
Identities = 25/101 (24%), Positives = 53/101 (52%)
Query: 587 KTISLTKVD-FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL--MLLRLRQACD 643
K+I+ +K+D F E +++ + + + +A + ++ N+ L +++ LR+ C+
Sbjct: 515 KSINYSKIDDFPNELEKLISQMQPE-VDRERAVVETNIPVESEVNLKLQNIMMLLRKCCN 573
Query: 644 HPLLVKEYDFDSVG---KISGEMAKRLPRDMLID-LLSRLE 680
HP L+ EY D V KI E+ + +++D +L L+
Sbjct: 574 HPYLI-EYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELK 613
Score = 68 (29.0 bits), Expect = 6.1e-28, Sum P(5) = 6.1e-28
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 297 LGGILADDQGLGKTISIIALIQM 319
+ GILAD+ GLGKT+ IA I +
Sbjct: 243 INGILADEMGLGKTVQCIATIAL 265
Score = 59 (25.8 bits), Expect = 6.1e-28, Sum P(5) = 6.1e-28
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 386 GTLVVC-PASVLRQWARELEDKVPDKAALSVLIYHG 420
G +VC P S L W E + PD + ++YHG
Sbjct: 273 GPFLVCGPLSTLPNWMAEFQRFTPD---IPTMLYHG 305
Score = 49 (22.3 bits), Expect = 3.3e-25, Sum P(5) = 3.3e-25
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 550 RNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609
+N LH L +L +LRR K + +PPK + SK++ FY + +
Sbjct: 435 QNVLH---MLHQILTPFLLRRLKSDVA-----LEVPPKREVVVYAPLSKKQEIFYTAIVN 486
Query: 610 DSLKKFKAFADAGTV 624
++ ++ TV
Sbjct: 487 RTIANMFGCSEKETV 501
Score = 41 (19.5 bits), Expect = 6.1e-28, Sum P(5) = 6.1e-28
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVAR 532
W +++DE IKN + ++ R
Sbjct: 349 WKYLIVDEGHRIKNMKCRLIR 369
Score = 37 (18.1 bits), Expect = 9.9e-23, Sum P(3) = 9.9e-23
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 537 LRAKRSTIKIPISRNSLHGYKKLQAVLR 564
L K+ T+K+ +NS+ ++ V R
Sbjct: 100 LERKKETLKVTKGKNSIGASEENPVVTR 127
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 284 (105.0 bits), Expect = 6.3e-28, Sum P(4) = 6.3e-28
Identities = 58/128 (45%), Positives = 83/128 (64%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQWT MLD++E +L+ + YRRLDG+ + R V FN D+ I L+S +AG
Sbjct: 608 LIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGG 667
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
GLN+ A VI+ D+ +NP + QA DR HRIGQT+PVT+ RL + TV++ I ++
Sbjct: 668 QGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIA-- 725
Query: 941 KRKMVASA 948
KRK+V A
Sbjct: 726 KRKLVLDA 733
Score = 94 (38.1 bits), Expect = 6.3e-28, Sum P(4) = 6.3e-28
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR---TKDPVELAK------YDVVLT 438
LVVCPASVL W REL P + +VL YHG +R +++ L+K ++V+L
Sbjct: 267 LVVCPASVLENWERELRKWCP---SFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLV 323
Query: 439 TYSIVTNEVPKQ 450
YS+ +Q
Sbjct: 324 CYSLFERHSEQQ 335
Score = 64 (27.6 bits), Expect = 6.3e-28, Sum P(4) = 6.3e-28
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 275 LLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 325
+LK +Q + + ++L + + G ILAD+ GLGKTI I + + L +
Sbjct: 212 ILKPYQLVGVNFLLLLYKKGIE--GAILADEMGLGKTIQAITYLTLLSRLNN 261
Score = 42 (19.8 bits), Expect = 6.3e-28, Sum P(4) = 6.3e-28
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+++++L +LRR K + L PK + V +++ YK +++++++A
Sbjct: 427 RMKSILGPFILRRLKSDVMQ-----QLVPKIQRVEYVLMERKQEDAYK----EAIEEYRA 477
Query: 618 FADAGTV--NQNYANILLMLL----------RLRQACDHPLLVKE-YDFDSVGKISGEM 663
+ A V + N L L + R+ +HPLL++ Y + V +I+ ++
Sbjct: 478 ASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKIANHPLLIRRIYSDEDVIRIARKL 536
>UNIPROTKB|F1S736 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:CU234205 EMBL:CU019540 Ensembl:ENSSSCT00000004555
Uniprot:F1S736
Length = 1688
Score = 209 (78.6 bits), Expect = 7.1e-28, Sum P(7) = 7.1e-28
Identities = 49/152 (32%), Positives = 83/152 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K++VFS W +LD++ +L + +++ ++ + A F D +I ++L+ L
Sbjct: 1535 KALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSA---FKHDPQINILLLPLHT 1591
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G+ GL ++ A+HV+L++ NP E QA+ R HRIGQT+P V R I+ T+E+R+ +
Sbjct: 1592 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1651
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
+ + + AS LTV DL LF
Sbjct: 1652 KTAERSHTNPSAKHS---EASVLTVADLADLF 1680
Score = 98 (39.6 bits), Expect = 7.1e-28, Sum P(7) = 7.1e-28
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 445 NEV 447
+E+
Sbjct: 782 SEL 784
Score = 91 (37.1 bits), Expect = 7.1e-28, Sum P(7) = 7.1e-28
Identities = 31/100 (31%), Positives = 47/100 (47%)
Query: 559 LQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES----DSLKK 614
L + + I+ R K ID I +PP+T + + FS E FY + D++ K
Sbjct: 897 LYSFIAKILWRSAKKDVIDQ---IQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDAVVK 953
Query: 615 FKAFAD-----AGTVNQNYANILLMLLRLRQACDHPLLVK 649
+ +D + + +IL LLRLRQAC HP V+
Sbjct: 954 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVR 993
Score = 82 (33.9 bits), Expect = 7.1e-28, Sum P(7) = 7.1e-28
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 372 LGGILADEMGLGKTVEVLALI 392
Score = 58 (25.5 bits), Expect = 7.1e-28, Sum P(7) = 7.1e-28
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 506 PLAKVGWFRVVLDEAQTIK 524
PL V W+R+ LDEAQ ++
Sbjct: 812 PLVAVEWWRICLDEAQMVE 830
Score = 55 (24.4 bits), Expect = 7.1e-28, Sum P(7) = 7.1e-28
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 660 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 711
+ ++ K+L + + + L + + TS + C +C+ + V CGH FC +C S
Sbjct: 1405 TSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECIS 1463
Score = 41 (19.5 bits), Expect = 7.1e-28, Sum P(7) = 7.1e-28
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 275 LLKHQKIALAWMLQKE 290
L +Q+ A+ WMLQ+E
Sbjct: 309 LRPYQREAVNWMLQQE 324
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 280 (103.6 bits), Expect = 1.1e-27, Sum P(5) = 1.1e-27
Identities = 68/189 (35%), Positives = 103/189 (54%)
Query: 785 CELNTKCSIVEI--HDLAGSNGSSAVHSKS-PIEGPIKSIVFSQWTRMLDLVENSLNQHC 841
C + T+ + + +D AG + AV + EG + ++F+Q TRMLD++E L H
Sbjct: 2013 CNMRTQFPDLRLIQYDCAGKLQTLAVLLRQLKAEGH-RVLIFTQMTRMLDVLEQFLTYHG 2071
Query: 842 IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPT 901
Y RLDG+ + R ++ FN D+ I ++S ++G +G+N+ A V+ D WNPT
Sbjct: 2072 HLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPT 2131
Query: 902 TEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRL 961
+ QA DR HRIGQTR V + RL TVE+ ILK + KR + A + G T +
Sbjct: 2132 MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAI--EGGNFTTAYF 2189
Query: 962 TVEDLRYLF 970
+ +R LF
Sbjct: 2190 KQQTIRELF 2198
Score = 89 (36.4 bits), Expect = 1.1e-27, Sum P(5) = 1.1e-27
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 615 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 667
Score = 76 (31.8 bits), Expect = 1.1e-27, Sum P(5) = 1.1e-27
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
K+L VLR +LRR K +D + +P K + + SK + Y + + K +
Sbjct: 837 KRLHKVLRPFLLRRVK---VDVEK--QMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK-E 890
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
A ++ +++ +L++LR+ C+HP L
Sbjct: 891 TLATG-----HFMSVINILMQLRKVCNHPNL 916
Score = 59 (25.8 bits), Expect = 1.1e-27, Sum P(5) = 1.1e-27
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSL 553
W ++LDEAQ IKN ++Q ++ + ++R + P+ +NSL
Sbjct: 750 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPL-QNSL 792
Score = 57 (25.1 bits), Expect = 1.1e-27, Sum P(5) = 1.1e-27
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 681 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 737
Query: 443 VTNE 446
V +
Sbjct: 738 VLQD 741
Score = 41 (19.5 bits), Expect = 7.9e-23, Sum P(4) = 7.9e-23
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 596 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 634
F ++ W + E+ ++K FK+ +N N LL+
Sbjct: 745 FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLL 783
Score = 39 (18.8 bits), Expect = 1.7e-21, Sum P(4) = 1.7e-21
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
QP +EEE DE+ E +R++I
Sbjct: 292 QPQEEEEEDDEETIEVEEQQEGNDAETQRREI 323
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 266 (98.7 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 59/152 (38%), Positives = 82/152 (53%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G ++++F+Q T+MLD++E LN H +Y RLDGT + R FN D I ++S
Sbjct: 1388 GGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILS 1447
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
++G LG+N+ A VI DL WNP + Q DR HRIGQTR V + R T+E IL
Sbjct: 1448 SRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNIL 1507
Query: 936 KLQDDKRKMVASAFGEDQGGGTASRLTVEDLR 967
+ + KR + E G T T D+R
Sbjct: 1508 RKANQKRMLDDVVIQE--GEFTTDYFTKLDVR 1537
Score = 87 (35.7 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 260 PKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P ++ +P LL L ++Q L W+ S H + GILAD+ GLGKTI IAL+
Sbjct: 811 PGLKTPIPH-LLRGTLREYQHFGLDWLAG--LYSNH-INGILADEMGLGKTIQTIALL 864
Score = 73 (30.8 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
KL VLR +LRR K ++ Q +P K + SK + Y S + K +
Sbjct: 1047 KLHTVLRPYILRRLKAD-VEKQ----MPGKYEHVVYCRLSKRQRYLYDGFMSRAQTK-ET 1100
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHP 645
A NY +I+ L++LR+ C+HP
Sbjct: 1101 LASG-----NYLSIINCLMQLRKVCNHP 1123
Score = 63 (27.2 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK 540
L + W ++LDEA IKN R+Q +A + R +
Sbjct: 942 LKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTR 975
Score = 57 (25.1 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-----VELAKYDVVLTTYSI 442
LVV P SV+ W E + P ++ Y+G + ++ ++V++T+Y +
Sbjct: 878 LVVVPTSVILNWEMEFKKWCP---GFKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQL 934
Query: 443 VTNE 446
V +
Sbjct: 935 VLQD 938
Score = 45 (20.9 bits), Expect = 8.1e-25, Sum P(5) = 8.1e-25
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 635 LLRLRQACDHPLLVKEYDFDSVGKISGE-MAKRLPRD 670
L+R R HPL + DF ++ IS E +++RL D
Sbjct: 1151 LVRRRLLYQHPLEKLDLDFLNLVPISREDISRRLADD 1187
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 268 (99.4 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 60/141 (42%), Positives = 89/141 (63%)
Query: 815 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 874
EG + ++FSQ+T+MLD++E L+ I Y RLDG+ + R + F+ + ++TV L+
Sbjct: 939 EGS-RILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVTVFLL 997
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 934
S KAG G+N+ A+ VIL D +NP + QA DRAHR+GQ R VTV RL +T+E+ I
Sbjct: 998 STKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYI 1057
Query: 935 LKLQDDKRK--MVASAFGEDQ 953
KL + K M S+ G+D+
Sbjct: 1058 QKLANTKLALDMSLSSDGKDR 1078
Score = 91 (37.1 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA------KYDVVLTTYS 441
LVV P+S L W REL P +L V Y+G + + + A KYD+++TTY
Sbjct: 602 LVVVPSSTLENWLRELARFCP---SLRVEPYYGSQQERANIREAIEENEIKYDILVTTYQ 658
Query: 442 IVTN 445
+ TN
Sbjct: 659 LATN 662
Score = 81 (33.6 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 253 ALEDLNQPKVEATLPDGLLS-VNLLKHQKIALAWM-LQKETRSLHCLGGILADDQGLGKT 310
A ++ + PK P L S V L +Q + + W+ L + + L GILAD+ GLGKT
Sbjct: 527 AADNSDFPKFVTEQPKTLASDVQLKSYQLVGVNWLHLLYQQK----LSGILADEMGLGKT 582
Query: 311 ISIIALIQM 319
++A +
Sbjct: 583 CQVVAFFAL 591
Score = 51 (23.0 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 28/126 (22%), Positives = 51/126 (40%)
Query: 83 MLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPR-IANVAS---ADYEKISSQQALK 138
MLP ++ ++ NG+ S ++ G QT P N S ++ S+ +
Sbjct: 1 MLP-YNSNYLSDNGKRKFSDENPQSEVYGSSQTGLPSSYGNPQSYGTPPVQQSSAMYGVN 59
Query: 139 RTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSK-GYIRDYYVKKND 197
++ S NT+ ++ + SS NAY P+ +N+ GY YV ++
Sbjct: 60 NSMGGGMYNTSENTQFMNTDYSQTSSYASTPMSNAYSRDAPAAINNNFGYS---YVGQSS 116
Query: 198 DDIMMY 203
+ Y
Sbjct: 117 QPVPSY 122
Score = 47 (21.6 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 634 MLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRD 670
+L++LR+A +H LL +++ D K+ +MAK + ++
Sbjct: 844 VLMQLRKAANHALLFRKFYDDE--KLK-QMAKDIMQE 877
Score = 42 (19.8 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAK 540
+V+ + T++N ++AR C SLR +
Sbjct: 602 LVVVPSSTLENWLRELARFCPSLRVE 627
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 280 (103.6 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 55/126 (43%), Positives = 83/126 (65%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ T MLD++ + + + RLDG+MS R++ + FNTD E+ + L+S +A
Sbjct: 617 KVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRA 676
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ AA VI+ D WNP ++ QA DR HRIGQT+PV V RL +T++ +I++
Sbjct: 677 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 736
Query: 939 DDKRKM 944
KRK+
Sbjct: 737 AAKRKL 742
Score = 76 (31.8 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 25/101 (24%), Positives = 53/101 (52%)
Query: 587 KTISLTKVD-FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL--MLLRLRQACD 643
K+I+ +K+D F E +++ + + + +A + ++ N+ L +++ LR+ C+
Sbjct: 514 KSINYSKIDDFPNELEKLISQIQPE-VDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCN 572
Query: 644 HPLLVKEYDFDSVG---KISGEMAKRLPRDMLID-LLSRLE 680
HP L+ EY D V KI E+ + +++D +L L+
Sbjct: 573 HPYLI-EYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELK 612
Score = 68 (29.0 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 297 LGGILADDQGLGKTISIIALIQM 319
+ GILAD+ GLGKT+ IA I +
Sbjct: 242 INGILADEMGLGKTVQCIATIAL 264
Score = 58 (25.5 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 386 GTLVVC-PASVLRQWARELEDKVPDKAALSVLIYHG 420
G +VC P S L W E + PD + ++YHG
Sbjct: 272 GPFLVCGPLSTLPNWMAEFKRFTPD---IPTMLYHG 304
Score = 48 (22.0 bits), Expect = 8.7e-25, Sum P(5) = 8.7e-25
Identities = 17/75 (22%), Positives = 32/75 (42%)
Query: 550 RNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609
+N LH L +L +LRR K + +PPK + SK++ FY + +
Sbjct: 434 QNVLH---MLHQILTPFLLRRLKSDVA-----LEVPPKREVVVYAPLSKKQEIFYTAIVN 485
Query: 610 DSLKKFKAFADAGTV 624
++ ++ T+
Sbjct: 486 RTIANMFGSSEKETI 500
Score = 41 (19.5 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVAR 532
W +++DE IKN + ++ R
Sbjct: 348 WKYLIVDEGHRIKNMKCRLIR 368
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 286 (105.7 bits), Expect = 1.4e-27, Sum P(6) = 1.4e-27
Identities = 60/130 (46%), Positives = 84/130 (64%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++SQ TRM+DL+E + Y RLDG+ + R V DF T +I V L+S +AG
Sbjct: 1124 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGG 1183
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ AA VI D WNPT + QA+DRAHR+GQT+ VTV RL + T+E+RIL+ +
Sbjct: 1184 LGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1243
Query: 941 K---RKMVAS 947
K ++MV S
Sbjct: 1244 KSEIQRMVIS 1253
Score = 72 (30.4 bits), Expect = 1.4e-27, Sum P(6) = 1.4e-27
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 257 LNQPKVEA--TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
L P + A +P + LK +Q + W+ + ++ GILAD+ GLGKT+
Sbjct: 499 LANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 555
Query: 314 IALI 317
IAL+
Sbjct: 556 IALL 559
Score = 65 (27.9 bits), Expect = 1.4e-27, Sum P(6) = 1.4e-27
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K I N L +L +L+ MLRR K ++ + L K LT + + Y
Sbjct: 726 KSAIDENQL---SRLHMILKPFMLRRIKKD-VENE----LSDKIEILTYCQLTSRQKLLY 777
Query: 605 KKLESD-SLKKFKAFADAGTVN-QNYANILL-MLLRLRQACDHPLLVKEYD 652
+ L++ S++ + T QN + L+ ++++ R+ C+HP L + +
Sbjct: 778 QALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 828
Score = 59 (25.8 bits), Expect = 1.4e-27, Sum P(6) = 1.4e-27
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL-----------AKYDVV 436
L++ PAS L W +E VP VL Y G + + A + VV
Sbjct: 573 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 629
Query: 437 LTTYSIVTNEV 447
+T+Y +V +V
Sbjct: 630 ITSYQLVVQDV 640
Score = 53 (23.7 bits), Expect = 1.4e-27, Sum P(6) = 1.4e-27
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 120 IANVASADYEKISSQ-QALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDT------FG 171
+ N+ DY+ + QALK A+ H T+S + ++ +R FG
Sbjct: 436 VVNITQEDYDSNHFKAQALKNAENAY-HIHQARTRSFDEDAKESRAAALRAADKSGSGFG 494
Query: 172 NAYHLAGPS 180
+Y LA PS
Sbjct: 495 ESYSLANPS 503
Score = 47 (21.6 bits), Expect = 1.4e-27, Sum P(6) = 1.4e-27
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 509 KVGWFRVVLDEAQTIKN 525
+V W +VLDEAQ +K+
Sbjct: 645 RVKWQYMVLDEAQALKS 661
Score = 45 (20.9 bits), Expect = 1.4e-25, Sum P(6) = 1.4e-25
Identities = 30/103 (29%), Positives = 48/103 (46%)
Query: 601 W-AFYKKLESD-SLKKFKAFADA-GTVNQNYA---NILLML---LRLRQACDHPLLVKEY 651
W A + L++ L + +++A+ GT +Q+Y + LL + L C PLL K
Sbjct: 916 WLALFLSLKASYRLHQLRSWAEPDGTSHQSYLRNKDFLLGVDFPLSFPNLCSCPLL-KSL 974
Query: 652 DFDSVGK-ISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPP 693
F S K +SG D ++ R TSS CC+ ++ P
Sbjct: 975 VFSSHCKAVSGYS------DHVVHQ-RRSATSSLRCCLLTELP 1010
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 238 (88.8 bits), Expect = 2.1e-27, Sum P(5) = 2.1e-27
Identities = 57/137 (41%), Positives = 78/137 (56%)
Query: 819 KSIVFSQWTRMLDLVENSLN----QHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 874
K I+FS + + LDL E+ L Q +Y RLDG+ S R+ +V F D V L+
Sbjct: 350 KVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSVFLFQNDPRYMVFLL 409
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 934
S +AG GLN+V++S VI LD WNP QA R HRIGQT+PV + R+ + TVED++
Sbjct: 410 STRAGGEGLNLVSSSIVIFLDDDWNPQVMRQAESRVHRIGQTQPVQIFRIHAKGTVEDQM 469
Query: 935 LKLQDDKRKMVASAFGE 951
+ D K + GE
Sbjct: 470 RRRMDKKAYLADKVMGE 486
Score = 79 (32.9 bits), Expect = 2.1e-27, Sum P(5) = 2.1e-27
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-------KYDVVLTTY 440
LVVCP SVL W E+ L + YHGGS ++ + +++V+TTY
Sbjct: 43 LVVCPLSVLNTWMSEISRWT---TGLRPMAYHGGSEERENLRTCFRQQGAEPWNIVVTTY 99
Query: 441 SIVTNEV 447
+ +++
Sbjct: 100 ETLCSDL 106
Score = 77 (32.2 bits), Expect = 2.1e-27, Sum P(5) = 2.1e-27
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 297 LGGILADDQGLGKTISIIALIQ 318
+GGILADD GLGKT+ ++L Q
Sbjct: 9 IGGILADDMGLGKTLQALSLFQ 30
Score = 63 (27.2 bits), Expect = 2.1e-27, Sum P(5) = 2.1e-27
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 563 LRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKL 607
L+ +MLRRTK D Q ++LPPK ++ V ++ + +Y+ +
Sbjct: 202 LKVVMLRRTK---CDSQIGLDLPPKKETVFSVPLTELQLGWYRTI 243
Score = 59 (25.8 bits), Expect = 2.1e-27, Sum P(5) = 2.1e-27
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI 544
K W VVLDE IKN R++ + LR++ +
Sbjct: 111 KTLWAHVVLDEGHRIKNSRSKRTQGVYRLRSENRIV 146
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 238 (88.8 bits), Expect = 2.3e-27, Sum P(5) = 2.3e-27
Identities = 49/125 (39%), Positives = 81/125 (64%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAG 879
++FSQ++RMLDL+E+ +Y RLDG+ R A++ +N D + + +++ +AG
Sbjct: 455 LIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAG 514
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VI+ D WNP ++ QA+DRAHRIGQ + V V RL +TV++RI++ +
Sbjct: 515 GLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAE 574
Query: 940 DKRKM 944
K ++
Sbjct: 575 AKLRL 579
Score = 77 (32.2 bits), Expect = 2.3e-27, Sum P(5) = 2.3e-27
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 225 GGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVN---------- 274
G P D R + + + GD R ED + +A D L+ +
Sbjct: 73 GAPVDTKKRGRPSKKNGIDGDHRHRKTEQEED-EEMVADAIKSDDLVIFDKSPFYIENGE 131
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVL 332
+ +Q L W+ + ++ GILAD+ GLGKT+ I++I + ++K+ ++
Sbjct: 132 MRDYQVRGLNWLASLQHNKIN---GILADEMGLGKTLQTISMIGYMKHYKNKASPHLV 186
Score = 76 (31.8 bits), Expect = 2.3e-27, Sum P(5) = 2.3e-27
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTY 440
A+ LV+ P S L+ WA E + P A+ VLI +R +D + K+DV TTY
Sbjct: 181 ASPHLVIVPKSTLQNWANEFKKWCPSINAV-VLIGDEAARNQVLRDVILPQKFDVCCTTY 239
Query: 441 SIV 443
++
Sbjct: 240 EMM 242
Score = 73 (30.8 bits), Expect = 2.3e-27, Sum P(5) = 2.3e-27
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VL+ +LRR K D + + LP K + + V SK + +Y K+ +K
Sbjct: 334 QRLHKVLQPFLLRRIKS---DVEKSL-LPKKEVKVY-VGLSKMQREWYTKV---LMKDID 385
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG V + A ++ +L+ LR+ +HP L
Sbjct: 386 IINGAGKVEK--ARLMNILMHLRKCVNHPYL 414
Score = 67 (28.6 bits), Expect = 2.3e-27, Sum P(5) = 2.3e-27
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGYKKLQAVLR 564
L K+ W +++DEA IKN +++++ L ++ + P+ +N+LH +L A+L
Sbjct: 249 LKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPL-QNNLH---ELWALLN 304
Query: 565 AIM 567
++
Sbjct: 305 FLL 307
Score = 45 (20.9 bits), Expect = 4.3e-07, Sum P(5) = 4.3e-07
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 919 VTVTRLTIRDTVEDR-ILKLQDDKRKMVASAFGEDQGGGTASRL 961
+T+ + + VE + ++ DK+K VA + G TA ++
Sbjct: 961 ITLIEREMGEVVESKPVIVTAADKKKSVAKDLSKSSGTPTAKKV 1004
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 283 (104.7 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 64/141 (45%), Positives = 86/141 (60%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G + +++ Q TRM+DL+E L +Y RLDG+ L R V DF +I V L+S
Sbjct: 1336 GGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLS 1395
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
+AG LG+N+ AA VI D WNPT + QA+DRAHR+GQTR VTV RL R T+E+RI
Sbjct: 1396 TRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEERIR 1455
Query: 936 K--LQDDKRKMVASAFGEDQG 954
K LQ ++ + V + G G
Sbjct: 1456 KRALQKEEVQRVVISGGAAGG 1476
Score = 78 (32.5 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 262 VEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+E + P +L+ L ++Q L W++ + ++ GILAD+ GLGKTI I+++
Sbjct: 786 IEISQPT-MLTAKLKEYQLKGLNWLVNLYEQGIN---GILADEMGLGKTIQSISVM 837
Score = 66 (28.3 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY-DVVLTTYS 441
LV+ PAS L W +E+ VP+ + VL Y G + KD L K+ D TY+
Sbjct: 851 LVIAPASTLHNWQQEITKFVPN---IKVLPYWGNA--KDRKILRKFWDRKHITYT 900
Score = 56 (24.8 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLRAI 566
KV W ++LDEAQ IK+ ++ ++ + + PI N ++L A+L I
Sbjct: 924 KVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNM----QELWALLHFI 979
Query: 567 M 567
M
Sbjct: 980 M 980
Score = 52 (23.4 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 22/100 (22%), Positives = 43/100 (43%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESD-SLKKF 615
++L +L+ MLRR K + + L K D + + A Y L + S+
Sbjct: 1014 RRLHMILKPFMLRRVK-KHVQQE----LGDKVEKDVFCDLTYRQRALYTNLRNRVSIMDL 1068
Query: 616 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS 655
A G + ++ ++++ R+ C+HP L + + S
Sbjct: 1069 IEKAAVGDETDS-TTLMNLVMQFRKVCNHPDLFERAETKS 1107
Score = 45 (20.9 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 134 QQALKRTLPAFPQPH 148
QQ +T PAFPQP+
Sbjct: 38 QQQPPQTPPAFPQPN 52
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 256 (95.2 bits), Expect = 4.7e-27, Sum P(4) = 4.7e-27
Identities = 56/133 (42%), Positives = 84/133 (63%)
Query: 821 IVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG 879
+VFSQ+ +D++E L NQH +++ RLDGT S+ R + F+ + +I V L+S KAG
Sbjct: 946 LVFSQFRLAMDILEVVLENQH-LKFVRLDGTTSVEDRQSIMDTFHENTDIPVFLLSTKAG 1004
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
G+N+ A+ VI+ D +NP + QA +RAHR+GQTR V V RL +DT+E++I L
Sbjct: 1005 GAGINLACANKVIIFDSSFNPQEDVQAENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQ 1064
Query: 940 DKRKMVASAFGED 952
K + + GED
Sbjct: 1065 TKLALDQAVAGED 1077
Score = 82 (33.9 bits), Expect = 4.7e-27, Sum P(4) = 4.7e-27
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++ +++L+ +LRR K +I+LP K + + + + Y+ E + +KK
Sbjct: 777 ERAKSMLKPFVLRRKK------HQVIDLPAKISRVEYCEMNAAQREIYEH-EKNEVKKLL 829
Query: 617 AFADAGTVNQNY-ANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAK 665
AG N ANIL+ +LRQA HPLL + + D KI +M+K
Sbjct: 830 EDRAAGKKTGNKSANILM---KLRQAAIHPLLHRRHYND---KILTKMSK 873
Score = 76 (31.8 bits), Expect = 4.7e-27, Sum P(4) = 4.7e-27
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG----SRTKDPVELAKYD--VVLTTYS 441
LVV P+S + W RE + P LSV+ Y+ ++ ++ +E + D VV+TTY+
Sbjct: 616 LVVVPSSTIENWLREFQKFCP---TLSVMPYYADQNVRAQIREQIEGNRDDINVVITTYT 672
Query: 442 IVTNEV 447
I +V
Sbjct: 673 IAKGKV 678
Score = 74 (31.1 bits), Expect = 4.7e-27, Sum P(4) = 4.7e-27
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 269 GLLSVNL-LK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
G+++ +L +K +Q + + W+ L C ILADD GLGKT +IA +
Sbjct: 556 GIMAEDLKMKNYQIVGINWLSLLFENELSC---ILADDMGLGKTCQVIAFL 603
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 268 (99.4 bits), Expect = 5.1e-27, Sum P(4) = 5.1e-27
Identities = 63/158 (39%), Positives = 94/158 (59%)
Query: 815 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 874
EG ++FSQ TRMLD++++ L Y RLDG++ R+ A+K+F+T +++ + L+
Sbjct: 350 EGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFST-KDVFIFLL 408
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 934
S KAG +G+N+ AA VI +D +NP + QA RAHRIGQTRPV V RL RDT+E+ I
Sbjct: 409 STKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEII 468
Query: 935 LKLQDDKRKMVASAFGE------DQGGGTASRLTVEDL 966
K ++ + E DQ AS L + ++
Sbjct: 469 YSRAVSKLRLTDTVIEEGRFSLLDQAQSAASGLQLSEI 506
Score = 82 (33.9 bits), Expect = 5.1e-27, Sum P(4) = 5.1e-27
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL-----AKYDVVLTTYSI 442
LV+CP +VL W +ELE P +LSV+ Y G + ++ ++ V+LTTY +
Sbjct: 88 LVLCPLAVLENWRQELERFCP---SLSVICYTGDKEKRAELQQNLKSDPRFHVLLTTYEM 144
Score = 72 (30.4 bits), Expect = 5.1e-27, Sum P(4) = 5.1e-27
Identities = 32/110 (29%), Positives = 48/110 (43%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L VL+ +LRR K + LP KT + S + +YK + L F+
Sbjct: 238 ELHQVLQPFLLRRVKA-----EVAAELPKKTELVVFHGLSALQKRYYKAILMRDLDAFRT 292
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRL 667
D T + +L +L++LR+ DHP L FD V EM + L
Sbjct: 293 --DQSTKTR----LLNVLMQLRKCVDHPYL-----FDGVEPEPFEMGEHL 331
Score = 63 (27.2 bits), Expect = 5.1e-27, Sum P(4) = 5.1e-27
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR-SLQSKS 327
GL +++L +Q + W+ C IL D+ GLGKT I+L+ R SL+
Sbjct: 29 GLGAIHLRPYQLDGVKWLSLCMKNQQGC---ILGDEMGLGKTCQTISLLAYARGSLKMNG 85
Query: 328 KTEVL 332
VL
Sbjct: 86 PFLVL 90
Score = 45 (20.9 bits), Expect = 2.9e-24, Sum P(4) = 2.9e-24
Identities = 16/80 (20%), Positives = 29/80 (36%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLRAIMLR 569
W +V+DEA +KN + + + + PI N Y L + ++ L
Sbjct: 157 WKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLP 216
Query: 570 RTKGTFIDGQPIINLPPKTI 589
F++ I P +
Sbjct: 217 EAVEDFVNAYADIQTEPALV 236
>UNIPROTKB|Q9NW36 [details] [associations]
symbol:HELLS "cDNA FLJ10339 fis, clone NT2RM2000740, weakly
similar to POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL138759 UniGene:Hs.655830
HGNC:HGNC:4861 ChiTaRS:HELLS EMBL:AK001201 IPI:IPI00012073
SMR:Q9NW36 STRING:Q9NW36 Ensembl:ENST00000371327
HOGENOM:HOG000198825 HOVERGEN:HBG072129 Uniprot:Q9NW36
Length = 310
Score = 280 (103.6 bits), Expect = 6.4e-27, Sum P(2) = 6.4e-27
Identities = 55/126 (43%), Positives = 83/126 (65%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ T MLD++ + + + RLDG+MS R++ + FNTD E+ + L+S +A
Sbjct: 54 KVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRA 113
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ AA VI+ D WNP ++ QA DR HRIGQT+PV V RL +T++ +I++
Sbjct: 114 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 173
Query: 939 DDKRKM 944
KRK+
Sbjct: 174 AAKRKL 179
Score = 60 (26.2 bits), Expect = 6.4e-27, Sum P(2) = 6.4e-27
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 635 LLRLRQACDHPLLVKEYDFDSVG---KISGEMAKRLPRDMLID-LLSRLE 680
++ LR+ C+HP L+ EY D V KI E+ + +++D +L L+
Sbjct: 1 MMLLRKCCNHPYLI-EYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELK 49
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 250 (93.1 bits), Expect = 7.8e-27, Sum P(5) = 7.8e-27
Identities = 55/150 (36%), Positives = 89/150 (59%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ +ML+L+++SL + + R+DGT P R + V++F + L++ + G
Sbjct: 752 LIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGG 811
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LGL + A VI++D WNP+T++Q+VDRA+RIGQT+ V V RL TVE++I + Q
Sbjct: 812 LGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVY 871
Query: 941 KRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
K + +A + + +DLR LF
Sbjct: 872 KGGLFKTATEHKE---QIRYFSQQDLRELF 898
Score = 104 (41.7 bits), Expect = 7.8e-27, Sum P(5) = 7.8e-27
Identities = 33/105 (31%), Positives = 49/105 (46%)
Query: 213 LMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLS 272
++ GK + + P+ RS +A G DER + L + TLP G ++
Sbjct: 322 ILSGKKAAEMKINKPA----RSYNAKRH--GYDERSLEDEGSITLTGLNLSYTLP-GKIA 374
Query: 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L HQ+ L W+ T+ GGIL DD GLGKT+ I + +
Sbjct: 375 TMLYPHQREGLNWLWSLHTQGK---GGILGDDMGLGKTMQICSFL 416
Score = 60 (26.2 bits), Expect = 7.8e-27, Sum P(5) = 7.8e-27
Identities = 25/79 (31%), Positives = 34/79 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLI--YHGGSRTKDPVELAKY----DVVLTTYS 441
LVV P ++L W +EL LS + Y+G S +L ++LTTY
Sbjct: 429 LVVAPKTLLPHWMKELAT-----VGLSQMTREYYGTSTKAREYDLHHILQGKGILLTTYD 483
Query: 442 IVTNEVPKQPSVDEEEADE 460
IV N K D+ DE
Sbjct: 484 IVRNNT-KALQGDDHYTDE 501
Score = 58 (25.5 bits), Expect = 7.8e-27, Sum P(5) = 7.8e-27
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 598 KEEWAFYKKLESDSLKKFKAFADAGTVNQNY-ANILLMLLRLRQACDHPLLV 648
K+E + +L + + ++AF ++ V + + L L L++ CDHPLL+
Sbjct: 632 KDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 683
Score = 55 (24.4 bits), Expect = 7.8e-27, Sum P(5) = 7.8e-27
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRN 551
W ++LDE IKN TQ A++ + + I PI N
Sbjct: 509 WDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNN 550
Score = 52 (23.4 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 902 TEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRL 961
T+ A DR RIG T V + +R+ ++ L R++ + FG+D G S+L
Sbjct: 584 TDKNATDREQRIGST----VAK-NLREHIQPFFL------RRLKSEVFGDD---GATSKL 629
Query: 962 TVED 965
+ +D
Sbjct: 630 SKKD 633
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 272 (100.8 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 59/150 (39%), Positives = 86/150 (57%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++F+Q TRMLD++E L H Y RLDG+ + R ++ FN D+ I ++S ++G
Sbjct: 2063 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGG 2122
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
+G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL TVE+ ILK +
Sbjct: 2123 VGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQ 2182
Query: 941 KRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
KR + A + G T + + +R LF
Sbjct: 2183 KRMLGDMAI--EGGNFTTAYFKQQTIRELF 2210
Score = 89 (36.4 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 605 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 657
Score = 76 (31.8 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
K+L VLR +LRR K +D + +P K + + SK + Y + + K +
Sbjct: 827 KRLHKVLRPFLLRRVK---VDVEK--QMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK-E 880
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
A ++ +++ +L++LR+ C+HP L
Sbjct: 881 TLATG-----HFMSVINILMQLRKVCNHPNL 906
Score = 59 (25.8 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSL 553
W ++LDEAQ IKN ++Q ++ + ++R + P+ +NSL
Sbjct: 740 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPL-QNSL 782
Score = 57 (25.1 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 671 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 727
Query: 443 VTNE 446
V +
Sbjct: 728 VLQD 731
Score = 43 (20.2 bits), Expect = 5.0e-21, Sum P(4) = 5.0e-21
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
QP DEEE DE+ E +R++I
Sbjct: 290 QPQEDEEEDDEETIEVEEQQEGNDAEAQRREI 321
Score = 42 (19.8 bits), Expect = 6.3e-21, Sum P(4) = 6.3e-21
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSE 471
+ + Q DEEE D+ G Y L+ +
Sbjct: 531 SEDAQSQSQADEEEEDDDFGVEYLLARD 558
Score = 41 (19.5 bits), Expect = 6.1e-22, Sum P(4) = 6.1e-22
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 596 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 634
F ++ W + E+ ++K FK+ +N N LL+
Sbjct: 735 FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLL 773
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 272 (100.8 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 59/150 (39%), Positives = 86/150 (57%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++F+Q TRMLD++E L H Y RLDG+ + R ++ FN D+ I ++S ++G
Sbjct: 2063 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGG 2122
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
+G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL TVE+ ILK +
Sbjct: 2123 VGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQ 2182
Query: 941 KRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
KR + A + G T + + +R LF
Sbjct: 2183 KRMLGDMAI--EGGNFTTAYFKQQTIRELF 2210
Score = 89 (36.4 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 612 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 664
Score = 76 (31.8 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
K+L VLR +LRR K +D + +P K + + SK + Y + + K +
Sbjct: 834 KRLHKVLRPFLLRRVK---VDVEK--QMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK-E 887
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
A ++ +++ +L++LR+ C+HP L
Sbjct: 888 TLATG-----HFMSVINILMQLRKVCNHPNL 913
Score = 59 (25.8 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSL 553
W ++LDEAQ IKN ++Q ++ + ++R + P+ +NSL
Sbjct: 747 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPL-QNSL 789
Score = 57 (25.1 bits), Expect = 8.3e-27, Sum P(5) = 8.3e-27
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 678 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 734
Query: 443 VTNE 446
V +
Sbjct: 735 VLQD 738
Score = 43 (20.2 bits), Expect = 5.0e-21, Sum P(4) = 5.0e-21
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSE 471
+ E Q DEEE D+ G Y L+ +
Sbjct: 537 SEESQSQSQADEEEEDDDFGVEYLLARD 564
Score = 41 (19.5 bits), Expect = 6.1e-22, Sum P(4) = 6.1e-22
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 596 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 634
F ++ W + E+ ++K FK+ +N N LL+
Sbjct: 742 FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLL 780
Score = 41 (19.5 bits), Expect = 7.9e-21, Sum P(4) = 7.9e-21
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 402 ELEDKVPDKAALSVLIYHGGSRTKDPVELAKY-DVVLTTYSIVTNEVPKQPSVDEEEADE 460
+LE +V L+ L GG + + + L +Y + S + ++ DE EAD
Sbjct: 422 QLEGEVDPAVELNELAREGGELSVEEL-LQQYAGAYASDASAPGSGSSEEEEEDEVEADS 480
Query: 461 KNGETYG 467
E G
Sbjct: 481 SESEPEG 487
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 272 (100.8 bits), Expect = 8.4e-27, Sum P(5) = 8.4e-27
Identities = 59/150 (39%), Positives = 86/150 (57%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++F+Q TRMLD++E L H Y RLDG+ + R ++ FN D+ I ++S ++G
Sbjct: 2074 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGG 2133
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
+G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL TVE+ ILK +
Sbjct: 2134 VGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQ 2193
Query: 941 KRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
KR + A + G T + + +R LF
Sbjct: 2194 KRMLGDMAI--EGGNFTTAYFKQQTIRELF 2221
Score = 89 (36.4 bits), Expect = 8.4e-27, Sum P(5) = 8.4e-27
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 613 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 665
Score = 76 (31.8 bits), Expect = 8.4e-27, Sum P(5) = 8.4e-27
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
K+L VLR +LRR K +D + +P K + + SK + Y + + K +
Sbjct: 835 KRLHKVLRPFLLRRVK---VDVEK--QMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK-E 888
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
A ++ +++ +L++LR+ C+HP L
Sbjct: 889 TLATG-----HFMSVINILMQLRKVCNHPNL 914
Score = 59 (25.8 bits), Expect = 8.4e-27, Sum P(5) = 8.4e-27
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSL 553
W ++LDEAQ IKN ++Q ++ + ++R + P+ +NSL
Sbjct: 748 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPL-QNSL 790
Score = 57 (25.1 bits), Expect = 8.4e-27, Sum P(5) = 8.4e-27
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 679 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 735
Query: 443 VTNE 446
V +
Sbjct: 736 VLQD 739
Score = 41 (19.5 bits), Expect = 6.2e-22, Sum P(4) = 6.2e-22
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 596 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 634
F ++ W + E+ ++K FK+ +N N LL+
Sbjct: 743 FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLL 781
Score = 39 (18.8 bits), Expect = 1.3e-20, Sum P(4) = 1.3e-20
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
QP +EEE DE+ E +R++I
Sbjct: 292 QPQEEEEEDDEETIEVEEQQEGNDAETQRREI 323
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 274 (101.5 bits), Expect = 1.0e-26, Sum P(6) = 1.0e-26
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++ Q T+M+DL+E L + RLDG+ L R V D+ T+ EI V L+S +AG
Sbjct: 1319 LIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLLSTRAGG 1378
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 934
LG+N+ AA VI D WNPT + QA+DRAHR+GQTR VTV RL +R T+E+R+
Sbjct: 1379 LGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERM 1432
Score = 72 (30.4 bits), Expect = 1.0e-26, Sum P(6) = 1.0e-26
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+L+ L ++Q L W+ + ++ GILAD+ GLGKT+ I+++
Sbjct: 701 ILACTLKEYQLKGLNWLANLYDQGIN---GILADEMGLGKTVQSISVL 745
Score = 70 (29.7 bits), Expect = 1.0e-26, Sum P(6) = 1.0e-26
Identities = 27/108 (25%), Positives = 49/108 (45%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L +L+ MLRR K + + L K D ++ + Y+ L+S +
Sbjct: 922 RRLHMILKPFMLRRVKKN-VQSE----LGDKIEIDVLCDLTQRQAKLYQVLKSQISTNYD 976
Query: 617 AFADAGTVNQ--NYA-------NILLMLLRLRQACDHPLLVKEYDFDS 655
A +A T + N A N++ +++ R+ C+HP L + D DS
Sbjct: 977 AIENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLFERADVDS 1024
Score = 58 (25.5 bits), Expect = 1.0e-26, Sum P(6) = 1.0e-26
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLR 564
L K+ W ++LDEAQ IK+ ++ + S + + PI +NS+ ++L A+L
Sbjct: 830 LQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPI-QNSM---QELWALLH 885
Query: 565 AIM 567
IM
Sbjct: 886 FIM 888
Score = 56 (24.8 bits), Expect = 1.0e-26, Sum P(6) = 1.0e-26
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425
LVV PAS L W E+ +P +L Y G + +
Sbjct: 759 LVVTPASTLHNWVNEISKFLPQ---FKILPYWGNANDR 793
Score = 43 (20.2 bits), Expect = 1.0e-26, Sum P(6) = 1.0e-26
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 107 NKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAF 144
NKN Q + R N DY I S+ +K TL +
Sbjct: 344 NKNKHQ-KIKKRRFTNCIVTDYNPIDSKLNIKITLKQY 380
Score = 41 (19.5 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 599 EEWAFYKKLESDSLKKFKAFADAGTVNQNYA 629
++W F +S L K + D +N+ +A
Sbjct: 92 KDWQFDNTNDSQDLHFKKLYRDMSMINKEWA 122
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 258 (95.9 bits), Expect = 1.0e-26, Sum P(5) = 1.0e-26
Identities = 52/124 (41%), Positives = 76/124 (61%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++F+Q T++LD++E LN H +Y RLDG + R + FN D +I V ++S ++G
Sbjct: 1011 LIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGG 1070
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ A VI D WNP + QA DR+HRIGQTR V + RL TVE +L+ +
Sbjct: 1071 LGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQ 1130
Query: 941 KRKM 944
KR +
Sbjct: 1131 KRML 1134
Score = 81 (33.6 bits), Expect = 1.0e-26, Sum P(5) = 1.0e-26
Identities = 42/161 (26%), Positives = 73/161 (45%)
Query: 167 RDTFGNAYHLAGPSTVNSKGYIRD-YYVKK--NDDD---IMMYEGNRILPSSLMHGKSVS 220
+ ++ + L G V K I D KK ND D + +++ SL++ + V+
Sbjct: 337 KKSYNHVSDLDGEVIVMKKEDITDGVSTKKDLNDGDQNEVPLHDTGSSSSLSLLYNEDVA 396
Query: 221 MTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLN-QPKVEAT---LPDGLLSVNLL 276
+ +D G A ++++ G + Q ++ N P + A +P L L
Sbjct: 397 SKKKRRVND----DGLARKKSIAG---ISEQRKFDEPNGSPVLHANKIQVPF-LFRGTLR 448
Query: 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++Q+ L W+ + + GILAD+ GLGKTI IAL+
Sbjct: 449 EYQQYGLEWLTALHDSNTN---GILADEMGLGKTIQTIALL 486
Score = 74 (31.1 bits), Expect = 1.0e-26, Sum P(5) = 1.0e-26
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
KL VLR +LRR K T ++ Q +P K + SK + Y + + + +
Sbjct: 667 KLHRVLRPYLLRRLK-TEVEKQ----MPAKYEHVVYCQLSKRQRFLYDDFINRA--RTRE 719
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLLVKE 650
+G N+ +I+ L++LR+ C+HP L +E
Sbjct: 720 ILASG----NFMSIINCLMQLRKVCNHPNLHEE 748
Score = 60 (26.2 bits), Expect = 1.0e-26, Sum P(5) = 1.0e-26
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVL 563
P + W ++LDEA IKN R+Q ++ + A+ + P+ N + + L ++
Sbjct: 563 PFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLM 622
Query: 564 RA 565
A
Sbjct: 623 PA 624
Score = 57 (25.1 bits), Expect = 1.0e-26, Sum P(5) = 1.0e-26
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD-----VVLTTYSI 442
L++ P SV+ W E + +P +L Y+G + + Y V +T+Y +
Sbjct: 500 LIIVPTSVMLNWEMEFKKFLP---GFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQL 556
Query: 443 VTNE 446
V +
Sbjct: 557 VLQD 560
Score = 48 (22.0 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 765 LDNEYISSKIRTVLDILHTQCELNT-KCSIVEIHDLAGSNGSSAVHSK 811
LD E I K + D + T+ +LN + V +HD S+ S ++++
Sbjct: 346 LDGEVIVMKKEDITDGVSTKKDLNDGDQNEVPLHDTGSSSSLSLLYNE 393
Score = 39 (18.8 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 596 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 634
F +++W + E+ ++K F++ +N N + LL+
Sbjct: 564 FRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLL 602
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 225 (84.3 bits), Expect = 1.1e-26, Sum P(4) = 1.1e-26
Identities = 50/122 (40%), Positives = 72/122 (59%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAG 879
++F Q T+++D++E+ L ++Y RLDG+ R +K FN D + L+S +AG
Sbjct: 840 LMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAG 899
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LGLN+ A VI+ D WNP + QA DRAHRIGQ V + RL D+VE+ IL+
Sbjct: 900 GLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAH 959
Query: 940 DK 941
K
Sbjct: 960 QK 961
Score = 93 (37.8 bits), Expect = 1.1e-26, Sum P(4) = 1.1e-26
Identities = 32/102 (31%), Positives = 49/102 (48%)
Query: 216 GKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
G S+ + G P ++A + S D+ + E+ Y + + E P L+ L
Sbjct: 447 GGSMGTPRHGSP-EVAVENKSDDKAELR--EKTDYYEVAHRIKEKITEQ--PTILVGGKL 501
Query: 276 LKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++Q L WM+ H L GILAD+ GLGKTI I+L+
Sbjct: 502 KEYQMKGLEWMVSLYNN--H-LNGILADEMGLGKTIQSISLV 540
Score = 88 (36.0 bits), Expect = 1.1e-26, Sum P(4) = 1.1e-26
Identities = 31/111 (27%), Positives = 54/111 (48%)
Query: 545 KIPISRN-SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 603
KI ++ SL ++L VLR +LRR K D + +LP K + K + S ++
Sbjct: 701 KIELTEEESLLVIRRLHKVLRPFLLRRLKK---DVEK--DLPDKVEKVLKCNLSGLQYVL 755
Query: 604 YKKLESDSLKKFKAF--ADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
Y+++ LK F AD G + +++LR+ C+HP + +E +
Sbjct: 756 YQQM----LKHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVE 802
Score = 84 (34.6 bits), Expect = 1.1e-26, Sum P(4) = 1.1e-26
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS---RTKDP-VELAKYDVVLTTYSIV 443
L++ P S + W E E P ++ V++Y G R+ P + + V+LTTY V
Sbjct: 553 LIIVPLSTITNWTLEFEKWAP---SIKVIVYKGSQQQRRSLQPDIRYGNFQVLLTTYEYV 609
Query: 444 TNEVP 448
E P
Sbjct: 610 IRERP 614
Score = 45 (20.9 bits), Expect = 2.8e-22, Sum P(4) = 2.8e-22
Identities = 21/98 (21%), Positives = 46/98 (46%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI---PISRNSLHGYKKLQAVL 563
LAK + +++DE +KN ++++++ + ++ + + P+ N + L VL
Sbjct: 616 LAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVL 675
Query: 564 RAIMLRRTKGTFIDGQPIINLP-PKTISLTKVDFSKEE 600
I + +F D N P T + K++ ++EE
Sbjct: 676 PGIF--NSVKSFDDW---FNTPFANTGAQEKIELTEEE 708
Score = 44 (20.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 26/116 (22%), Positives = 57/116 (49%)
Query: 570 RTKGTF--IDGQPIINLPPKTISLTKV--DFSKEEWAFYKKLESDSLKKFKAFADAGTVN 625
+++G F ++ Q +++ ++K ++ K+E F ++L S++LK G N
Sbjct: 74 KSEGKFEDVNAQAKLDIESVLAQVSKEHEEYIKDESEFMQELFSENLKG--TIKSEGFDN 131
Query: 626 QNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLET 681
+ + + LL L + D P ++ +F + IS + K + +++ L+ LET
Sbjct: 132 ELFEKQVAGLLLLSRDYDLPEKFQK-EFTT---ISDQTKKDDLVNEILEKLTELET 183
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 281 (104.0 bits), Expect = 1.3e-26, Sum P(6) = 1.3e-26
Identities = 59/130 (45%), Positives = 83/130 (63%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++SQ TRM+DL+E + Y RLDG+ + R V DF +I V L+S +AG
Sbjct: 1129 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGG 1188
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ AA VI D WNPT + QA+DRAHR+GQT+ VTV RL + T+E+RIL+ +
Sbjct: 1189 LGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1248
Query: 941 K---RKMVAS 947
K ++MV S
Sbjct: 1249 KSEIQRMVIS 1258
Score = 72 (30.4 bits), Expect = 1.3e-26, Sum P(6) = 1.3e-26
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 257 LNQPKVEA--TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
L P + A +P + LK +Q + W+ + ++ GILAD+ GLGKT+
Sbjct: 502 LANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 558
Query: 314 IALI 317
IAL+
Sbjct: 559 IALL 562
Score = 60 (26.2 bits), Expect = 1.3e-26, Sum P(6) = 1.3e-26
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 120 IANVASADYEK-ISSQQALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDT------FG 171
+ N+ DY+ QALK A+ Q H T+S + ++ +R FG
Sbjct: 439 VVNITQEDYDSNYYKAQALKNAEDAY-QIHQARTRSFDEDAKESRAAALRAANKSGTGFG 497
Query: 172 NAYHLAGPS 180
+Y LA PS
Sbjct: 498 ESYSLANPS 506
Score = 59 (25.8 bits), Expect = 1.3e-26, Sum P(6) = 1.3e-26
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL-----------AKYDVV 436
L++ PAS L W +E VP VL Y G + + A + VV
Sbjct: 576 LIISPASTLNNWHQEFARFVPK---FKVLPYWGNPHDRKVIRKFWSQKTLYTQDAPFHVV 632
Query: 437 LTTYSIVTNEV 447
+T+Y +V +V
Sbjct: 633 ITSYQLVVQDV 643
Score = 54 (24.1 bits), Expect = 1.3e-26, Sum P(6) = 1.3e-26
Identities = 24/111 (21%), Positives = 48/111 (43%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K I N L +L +L+ MLRR K ++ + L K L + + Y
Sbjct: 729 KSAIDENQL---SRLHMILKPFMLRRIKKD-VENE----LSDKIEILMYCQQTSRQKLLY 780
Query: 605 KKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHPLLVKEYD 652
+ L++ + GT Q ++++ ++++ R+ C+HP L + +
Sbjct: 781 QALKNKISIDDLLQSSMGTTQQAQTTTSSLMNLVMQFRKVCNHPELFERQE 831
Score = 47 (21.6 bits), Expect = 1.3e-26, Sum P(6) = 1.3e-26
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 509 KVGWFRVVLDEAQTIKN 525
+V W +VLDEAQ +K+
Sbjct: 648 RVKWQYMVLDEAQALKS 664
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 281 (104.0 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 59/130 (45%), Positives = 84/130 (64%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++SQ TRM+DL+E + Y RLDG+ + R V DF + +I V L+S +AG
Sbjct: 1152 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQSRTDIFVFLLSTRAGG 1211
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ AA VI D WNPT + QA+DRAHR+GQT+ VTV RL + T+E+RIL+ +
Sbjct: 1212 LGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1271
Query: 941 K---RKMVAS 947
K ++MV S
Sbjct: 1272 KSEIQRMVIS 1281
Score = 77 (32.2 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 257 LNQPKVEA--TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
L+ P ++A +P + LK +Q + W+ + ++ GILAD+ GLGKT+
Sbjct: 498 LSNPSIQAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 554
Query: 314 IALI 317
IAL+
Sbjct: 555 IALL 558
Score = 67 (28.6 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 25/114 (21%), Positives = 52/114 (45%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K I N L +L +L+ MLRR K ++ + L K LT + + Y
Sbjct: 725 KSAIDENQL---SRLHMILKPFMLRRIKKD-VENE----LSDKIEILTYCQLTSRQRLLY 776
Query: 605 KKLESD-SLKKF--KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS 655
+ L++ S++ + A + ++++ ++++ R+ C+HP L + + S
Sbjct: 777 QALKNKISIEDLLQSSMGSAQQAHSTTSSLMNLVMQFRKVCNHPDLFERQEIRS 830
Score = 62 (26.9 bits), Expect = 4.3e-25, Sum P(6) = 4.3e-25
Identities = 35/135 (25%), Positives = 60/135 (44%)
Query: 104 LSGNKNVGQLQTVNPRIANVASADYEK-ISSQQALKRTLPAFPQPHSLNTK-----SKSS 157
L N + Q+ + NV+ DY+ QALK A+ Q H T+ +K S
Sbjct: 419 LEDNSSQRQIDIGGGVMVNVSQEDYDSDYYKSQALKNAKEAY-QIHQARTRLFDEEAKDS 477
Query: 158 -VENMNSSQIRDT-FGNAYHLAGPSTVNSK---------GYIRDYYVKKNDDDIMMYE-G 205
+++++ + + FG +Y L+ PS + G ++ Y +K + +YE G
Sbjct: 478 RCASLHAASMSGSGFGESYSLSNPSIQAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQG 537
Query: 206 -NRILPSSLMHGKSV 219
N IL + GK+V
Sbjct: 538 INGILADEMGLGKTV 552
Score = 61 (26.5 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV-----------ELAKYDVV 436
L++ PAS L W +E VP VL Y G + + + A + VV
Sbjct: 572 LIISPASTLNNWHQEFSRFVPK---FKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFHVV 628
Query: 437 LTTYSIVTNEV 447
+T+Y +V +V
Sbjct: 629 ITSYQLVVQDV 639
Score = 47 (21.6 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 509 KVGWFRVVLDEAQTIKN 525
+V W +VLDEAQ +K+
Sbjct: 644 RVKWQYMVLDEAQALKS 660
Score = 40 (19.1 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 692 PPEDSVVTMCGHV 704
P +D VV +C HV
Sbjct: 1024 PRKDRVVCVCAHV 1036
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 286 (105.7 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 60/130 (46%), Positives = 84/130 (64%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++SQ TRM+DL+E + Y RLDG+ + R V DF T +I V L+S +AG
Sbjct: 1131 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGG 1190
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ AA VI D WNPT + QA+DRAHR+GQT+ VTV RL + T+E+RIL+ +
Sbjct: 1191 LGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1250
Query: 941 K---RKMVAS 947
K ++MV S
Sbjct: 1251 KSEIQRMVIS 1260
Score = 72 (30.4 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 257 LNQPKVEA--TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
L P + A +P + LK +Q + W+ + ++ GILAD+ GLGKT+
Sbjct: 506 LANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 562
Query: 314 IALI 317
IAL+
Sbjct: 563 IALL 566
Score = 59 (25.8 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL-----------AKYDVV 436
L++ PAS L W +E VP VL Y G + + A + VV
Sbjct: 580 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 636
Query: 437 LTTYSIVTNEV 447
+T+Y +V +V
Sbjct: 637 ITSYQLVVQDV 647
Score = 55 (24.4 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 23/111 (20%), Positives = 49/111 (44%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K I N L +L +L+ MLRR K ++ + L K L + + Y
Sbjct: 733 KSAIDENQL---SRLHMILKPFMLRRIKKD-VENE----LSDKIEILMYCQLTSRQKLLY 784
Query: 605 KKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHPLLVKEYD 652
+ L++ + + G+ Q ++++ ++++ R+ C+HP L + +
Sbjct: 785 QALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQE 835
Score = 53 (23.7 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 120 IANVASADYEKISSQ-QALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDT------FG 171
+ N+ DY+ + QALK A+ H T+S + ++ +R FG
Sbjct: 443 VVNITQEDYDSNHFKAQALKNAENAY-HIHQARTRSFDEDAKESRAAALRAANKSGTGFG 501
Query: 172 NAYHLAGPS 180
+Y LA PS
Sbjct: 502 ESYSLANPS 510
Score = 47 (21.6 bits), Expect = 1.4e-26, Sum P(6) = 1.4e-26
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 509 KVGWFRVVLDEAQTIKN 525
+V W +VLDEAQ +K+
Sbjct: 652 RVKWQYMVLDEAQALKS 668
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 287 (106.1 bits), Expect = 1.6e-26, Sum P(4) = 1.6e-26
Identities = 56/126 (44%), Positives = 84/126 (66%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ TRMLD++ + + + RLDG+MS R++ + FNTD ++ + L+S +A
Sbjct: 595 KVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNTDPDVFIFLVSTRA 654
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ AA VI+ D WNP ++ QA DR HRIGQTRPV V RL +T++ +I++
Sbjct: 655 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERA 714
Query: 939 DDKRKM 944
KRK+
Sbjct: 715 AAKRKL 720
Score = 76 (31.8 bits), Expect = 1.6e-26, Sum P(4) = 1.6e-26
Identities = 23/102 (22%), Positives = 52/102 (50%)
Query: 587 KTISLTKVD-FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL--MLLRLRQACD 643
K++ +K+D F E +++ + + + + + ++ N+ L +++ LR+ C+
Sbjct: 492 KSVDYSKIDDFPNELEKLISQIQPE-VDRERTIVETSVPIESEVNLKLQNIMMLLRKCCN 550
Query: 644 HPLLVKEYDFDSVG---KISGEMAKRLPRDMLID-LLSRLET 681
HP L+ EY D V K+ E+ + +++D +L L+T
Sbjct: 551 HPYLI-EYPIDPVTQEFKVDEELVTNSGKFLILDRMLPELKT 591
Score = 68 (29.0 bits), Expect = 1.6e-26, Sum P(4) = 1.6e-26
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 297 LGGILADDQGLGKTISIIALIQM 319
+ GILAD+ GLGKT+ IA I +
Sbjct: 220 INGILADEMGLGKTVQCIATIAL 242
Score = 49 (22.3 bits), Expect = 9.2e-24, Sum P(4) = 9.2e-24
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 550 RNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609
+N LH L +L +LRR K + +PPK + SK++ FY + +
Sbjct: 412 QNVLH---MLHQILTPFLLRRLKSDVA-----LEVPPKREVVVYAPLSKKQEIFYTAIVN 463
Query: 610 DSLKKFKAFADAGTV 624
++ ++ TV
Sbjct: 464 RTIANMFGSSEKETV 478
Score = 41 (19.5 bits), Expect = 1.6e-26, Sum P(4) = 1.6e-26
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVAR 532
W +++DE IKN + ++ R
Sbjct: 326 WKYLIVDEGHRIKNMKCRLIR 346
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 281 (104.0 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
Identities = 59/130 (45%), Positives = 83/130 (63%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++SQ TRM+DL+E + Y RLDG+ + R V DF +I V L+S +AG
Sbjct: 1121 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGG 1180
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ AA VI D WNPT + QA+DRAHR+GQT+ VTV RL + T+E+RIL+ +
Sbjct: 1181 LGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1240
Query: 941 K---RKMVAS 947
K ++MV S
Sbjct: 1241 KSEIQRMVIS 1250
Score = 72 (30.4 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 257 LNQPKVEA--TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
L P + A +P + LK +Q + W+ + ++ GILAD+ GLGKT+
Sbjct: 497 LANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 553
Query: 314 IALI 317
IAL+
Sbjct: 554 IALL 557
Score = 59 (25.8 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL-----------AKYDVV 436
L++ PAS L W +E VP VL Y G + + A + VV
Sbjct: 571 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 627
Query: 437 LTTYSIVTNEV 447
+T+Y +V +V
Sbjct: 628 ITSYQLVVQDV 638
Score = 59 (25.8 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
Identities = 26/111 (23%), Positives = 50/111 (45%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K I N L +L +L+ MLRR K ++ + L K L + + Y
Sbjct: 724 KSAIDENQL---SRLHMILKPFMLRRIKKD-VENE----LSDKIEILMYCQLTSRQKLLY 775
Query: 605 KKLESD-SLKKFKAFADAGTVN-QNYANILL-MLLRLRQACDHPLLVKEYD 652
+ L++ S++ + T QN + L+ ++++ R+ C+HP L + +
Sbjct: 776 QALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
Score = 53 (23.7 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 120 IANVASADYEKISSQ-QALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDT------FG 171
+ N+ DY+ + QALK A+ H T+S + ++ +R FG
Sbjct: 434 VVNITQEDYDSNHFKAQALKNAENAY-HIHQARTRSFDEDAKESRAAALRAANKSGTGFG 492
Query: 172 NAYHLAGPS 180
+Y LA PS
Sbjct: 493 ESYSLANPS 501
Score = 47 (21.6 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 509 KVGWFRVVLDEAQTIKN 525
+V W +VLDEAQ +K+
Sbjct: 643 RVKWQYMVLDEAQALKS 659
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 270 (100.1 bits), Expect = 2.3e-26, Sum P(5) = 2.3e-26
Identities = 53/127 (41%), Positives = 85/127 (66%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T++LD++E LN +++ RLDG+ + R + + DF+T+ V L+S K+G
Sbjct: 784 LIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVFLLSTKSGG 843
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
G+N+ A+ VIL D +NP + QA DRAHR+GQTRPV V RL ++T+E+ I +L +
Sbjct: 844 FGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRLANT 903
Query: 941 KRKMVAS 947
K + +S
Sbjct: 904 KLTLESS 910
Score = 77 (32.2 bits), Expect = 2.3e-26, Sum P(5) = 2.3e-26
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 267 PDGLLS-VNLLKHQKIALAWM-LQKETRSLHCLGGILADDQGLGKTISIIALIQM--QRS 322
P + S + L +Q + L W+ L + + L GILAD+ GLGKT +I+ + ++
Sbjct: 405 PSSIASGITLKSYQIVGLNWLCLMYKAK----LSGILADEMGLGKTCQVISFLASLKEKG 460
Query: 323 LQSK 326
+Q++
Sbjct: 461 IQNR 464
Score = 68 (29.0 bits), Expect = 2.3e-26, Sum P(5) = 2.3e-26
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG--GSRTKDPVEL--AKYDVVLTTYSIV 443
LVV P+S L W RE E P +L V Y G R L +DV++TTY +
Sbjct: 466 LVVVPSSTLGNWLREFEKFCP---SLRVESYSGTQSERINKRYYLMDTDFDVLVTTYQLA 522
Query: 444 T 444
+
Sbjct: 523 S 523
Score = 55 (24.4 bits), Expect = 2.3e-26, Sum P(5) = 2.3e-26
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 604 YKKLESDSLKKFKAFADA-GTVNQNYANILLMLLRLRQACDHPLLVK-EYDFDSVGKISG 661
Y +E L + + + VN N NIL+ +LR+A H LL + +Y+ +++
Sbjct: 657 YCHMEETQLSLYLSVLELKNLVNANRENILM---QLRKAALHQLLFRSQYNLETLSL--- 710
Query: 662 EMAKRLPR-DMLID 674
M+KR+ R D +D
Sbjct: 711 -MSKRILREDAYLD 723
Score = 46 (21.3 bits), Expect = 2.3e-26, Sum P(5) = 2.3e-26
Identities = 28/115 (24%), Positives = 50/115 (43%)
Query: 90 DHQM---SNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQ 146
DH+ S+ A D H ++V ++ N +I D E+I+ A+K+ PA
Sbjct: 79 DHKKYVESSYAAYDPHDQPPERDVSLKESSN-KINPSNFFDSEQITKINAVKKRFPALDS 137
Query: 147 PHSLNTKSKSSV-ENMNSSQIRDTFGNAYHLAGPSTVNSKGY-IRDYYVKKNDDD 199
+ T K + EN+ ++ TF G ST+N + + ++K+ D
Sbjct: 138 EMIIATLEKFNWRENITIHKL--TFQKLLG-RGNSTINKSAQKLNNQPIEKSSVD 189
Score = 41 (19.5 bits), Expect = 7.9e-20, Sum P(4) = 7.9e-20
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 410 KAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNG--ETYG 467
K L V+ +D + L + TT + + N +P+ EE + E +G E
Sbjct: 209 KKPLRVIELSDEETNEDDL-LGQSPTACTTDANIDNSIPENSDKIEEVSIESSGPSEVED 267
Query: 468 LSSEFSV 474
SE+ V
Sbjct: 268 EMSEYDV 274
Score = 41 (19.5 bits), Expect = 7.9e-20, Sum P(4) = 7.9e-20
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 203 YEGNRILPSSLMHGKSVSMTQFGGPSDLA--YR---SGS-ADERAVGGDERLI-YQAALE 255
YE N PSS+ G ++ Q G + L Y+ SG ADE +G ++I + A+L+
Sbjct: 398 YEYNSQQPSSIASGITLKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLASLK 457
Query: 256 DLN-QPKVEATLPDGLLSVNLLKHQK 280
+ Q + +P L L + +K
Sbjct: 458 EKGIQNRHLVVVPSSTLGNWLREFEK 483
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 258 (95.9 bits), Expect = 2.9e-26, Sum P(5) = 2.9e-26
Identities = 49/126 (38%), Positives = 75/126 (59%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
++++F+Q T++LD++E LN H +Y RLDG + R + FN D +I V ++S ++
Sbjct: 1384 RALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRS 1443
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ A VI D WNP + Q DR HRIGQ R V + R T+E I+K
Sbjct: 1444 GGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKA 1503
Query: 939 DDKRKM 944
+ KR++
Sbjct: 1504 NQKRQL 1509
Score = 95 (38.5 bits), Expect = 2.9e-26, Sum P(5) = 2.9e-26
Identities = 56/235 (23%), Positives = 101/235 (42%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTL--PAFP 145
S+D + S+ DD+ G ++ Q N +A+ A+ +E + ++ L L +
Sbjct: 641 SEDAESSDD--DDTDVTRGLASLYQ----NDEVADFATTTFEYSAEEKKLIEDLNQESDS 694
Query: 146 QPHSL-NTKSKSSVENMNSSQ--IRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMM 202
+ +SL ++ S SS+ + SS+ DT + ++ P + G + I+
Sbjct: 695 RMNSLLDSDSVSSISDSESSEESSSDTEMDQSTVSEPPRSSETGSNTGLASLFTNGTIVS 754
Query: 203 YEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKV 262
E + + SS +S + +L ++ DE + +E +N KV
Sbjct: 755 DEEDDVSISSNFENES-DESMNSSDRELEVNGNGKIDKIASTDED---DSNVEIVNGSKV 810
Query: 263 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+ LL L +QK L W+ + + GILAD+ GLGKTI I+L+
Sbjct: 811 KDVPIPSLLRGTLRPYQKQGLNWLASLYNNNTN---GILADEMGLGKTIQTISLL 862
Score = 70 (29.7 bits), Expect = 2.9e-26, Sum P(5) = 2.9e-26
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 540 KRSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSK 598
+R+T K+ +RN++ +L VLR +LRR K ++ Q +P K + SK
Sbjct: 1044 ERTTQKMDEETRNTV---ARLHQVLRPYLLRRLKKD-VEKQ----MPGKYEHIVYCRLSK 1095
Query: 599 EEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP 645
+ Y S + K K +G N+ +I+ L++LR+ C+HP
Sbjct: 1096 RQRFLYDDFMSRA--KTKETLASG----NFLSIINCLMQLRKVCNHP 1136
Score = 56 (24.8 bits), Expect = 2.9e-26, Sum P(5) = 2.9e-26
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYD---VVLTTYSI 442
L++ P SV+ W E + P VL Y+G R + K D V +T+Y +
Sbjct: 876 LIIVPTSVMLNWEMEFKKFAP---GFKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQL 932
Query: 443 VTNE 446
V +
Sbjct: 933 VVQD 936
Score = 53 (23.7 bits), Expect = 2.9e-26, Sum P(5) = 2.9e-26
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRN 551
W ++LDEA IKN R+ RA + + + P+ N
Sbjct: 945 WTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNN 986
Score = 53 (23.7 bits), Expect = 1.1e-20, Sum P(4) = 1.1e-20
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 424 TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETY-GLSSEFSVNKK 477
+++P A+ D TT+ TN+ S +EEE +E N + + ++ VN K
Sbjct: 543 SREPTVEAESDDNSTTFDDNTNDSDNFSSSEEEENEEDNTQQQINGNKKYDVNGK 597
Score = 45 (20.9 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 596 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 634
F + W + E+ ++K F++ +N N N LL+
Sbjct: 940 FKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLL 978
Score = 45 (20.9 bits), Expect = 7.3e-20, Sum P(4) = 7.3e-20
Identities = 36/169 (21%), Positives = 70/169 (41%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISS---Q 134
++ + + F ++ S +D ++GN + ++ + + +NV + K+
Sbjct: 757 EDDVSISSNFENESDESMNSSDRELEVNGNGKIDKIASTDEDDSNVEIVNGSKVKDVPIP 816
Query: 135 QALKRTLPAFPQPHSLNTKSKSSVENMNSSQI-RDTFGNAYHLAGPSTVNSKGYIRDYYV 193
L+ TL + Q LN + S+ N N++ I D G + T++ Y+ +
Sbjct: 817 SLLRGTLRPY-QKQGLNWLA--SLYNNNTNGILADEMGLGKTI---QTISLLAYLACEHH 870
Query: 194 KKNDDDIMMYEGNRILPSSLMHGKSVSMTQFG-GPSDLAYRSGSADERA 241
K I I+P+S+M + +F G L Y GS +RA
Sbjct: 871 KWGPHLI-------IVPTSVMLNWEMEFKKFAPGFKVLTYY-GSPQQRA 911
Score = 42 (19.8 bits), Expect = 0.00043, Sum P(5) = 0.00043
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 704 VFCYQCASEYITGDDNMCPAPRCKEQLGADVV---------FSKTTLKNCVSDDGGGSPT 754
V Y+ SEY T + N+ K QL V+ F K ++++ VSD G
Sbjct: 1484 VHIYRFVSEY-TIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKFSVRDLVSDSNIGKEI 1542
Query: 755 DSPFADKSG 763
D SG
Sbjct: 1543 TDRTIDFSG 1551
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 263 (97.6 bits), Expect = 3.2e-26, Sum P(5) = 3.2e-26
Identities = 52/127 (40%), Positives = 80/127 (62%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G ++++F+Q T+MLD++E +N + Y RLDG+ R ++ FNT+ +I + ++S
Sbjct: 1090 GGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILS 1149
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
++G +G+N+V A VI D WNP + QA DR HRIGQTR V + RL T+E+ IL
Sbjct: 1150 TRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENIL 1209
Query: 936 KLQDDKR 942
K + KR
Sbjct: 1210 KKANQKR 1216
Score = 99 (39.9 bits), Expect = 3.2e-26, Sum P(5) = 3.2e-26
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
KV LP LL +L ++Q I L W++ + L+ GILAD+ GLGKTI IAL+
Sbjct: 523 KVRTKLPF-LLKHSLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIMTIALL 575
Score = 64 (27.6 bits), Expect = 3.2e-26, Sum P(5) = 3.2e-26
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-----VELAKYDVVLTTYSI 442
L+V P SV+ W E P A +L Y G ++ + ++L + V +TTY +
Sbjct: 589 LIVVPTSVMLNWETEFLKWCP---AFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRL 645
Query: 443 VTNE 446
V +
Sbjct: 646 VIQD 649
Score = 57 (25.1 bits), Expect = 3.2e-26, Sum P(5) = 3.2e-26
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L VLR +LRR K ++ Q LP K + SK + Y+ + + + +A
Sbjct: 746 RLHNVLRPFLLRRLKRD-VEKQ----LPSKHEHVIFCRLSKRQRNLYEDFIAST--ETQA 798
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHP 645
+G+ + ++ ++++LR+ C+HP
Sbjct: 799 TLTSGS----FFGMISIIMQLRKVCNHP 822
Score = 54 (24.1 bits), Expect = 3.2e-26, Sum P(5) = 3.2e-26
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKR 541
W ++LDEA IKN ++Q + + +KR
Sbjct: 658 WKYLILDEAHLIKNWKSQRWQTLLNFNSKR 687
Score = 42 (19.8 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRK 479
T E PK+P + D E LS +F +K K
Sbjct: 34 TLEAPKEPRRPKTHWDHVLEEMAWLSKDFESERKWK 69
Score = 38 (18.4 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 745 VSDDGGGSPTDSPFADKSGIL--DNEYISSKIRTV 777
++ GG S D A KSG DNE + + +T+
Sbjct: 1 MASKGGKSKPDIVMASKSGKSKPDNESRAKRQKTL 35
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 212 (79.7 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 48/127 (37%), Positives = 78/127 (61%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK--DFNT-DREITVMLMSLK 877
++FSQ TR+LD++++ Y R+DG S P +R V+ FN + + + L+S +
Sbjct: 646 LLFSQMTRLLDIIDDYCRWKNYPYLRIDG--STPGDERQVRINQFNEPNSKYFIFLLSTR 703
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG +G+N+ A VIL D +NP + QA+DRAHRIGQ + V V R +++VE++I++
Sbjct: 704 AGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVER 763
Query: 938 QDDKRKM 944
K K+
Sbjct: 764 AAKKLKL 770
Score = 94 (38.1 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 40/121 (33%), Positives = 65/121 (53%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L +L+ MLRR K ++ + +LPPK V SK + KKL SD L K
Sbjct: 528 QLHTILKPFMLRRLK---VEVEQ--SLPPKREIYIFVGMSKLQ----KKLYSDILSKNID 578
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLL---VKEYDF---DSVGKISGEMA---KRLP 668
+A T ++N +L +L++LR+ C+HP L ++E + + + + SG+M+ K LP
Sbjct: 579 VLNAMTGSKN--QMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLDKLLP 636
Query: 669 R 669
R
Sbjct: 637 R 637
Score = 79 (32.9 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 254 LEDLNQPKVEATLPDGLLSVN--LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKT- 310
L+D N+ EA + +++N + +Q L W+ Q ++ GILAD+ GLGKT
Sbjct: 300 LKDANEED-EAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKIN---GILADEMGLGKTL 355
Query: 311 --ISIIALIQMQRSLQSKS 327
IS++ ++ ++++ KS
Sbjct: 356 QTISLLCYLRFNKNIKKKS 374
Score = 77 (32.2 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSLHG-YKKLQAVLRA 565
L + WF +V+DEA IKN ++ ++ S+R RS ++ I+ LH K+L ++L
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSS---SVRFLRSENRLLITGTPLHNNLKELWSLLNF 494
Query: 566 IM 567
+M
Sbjct: 495 LM 496
Score = 69 (29.3 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL----AKYDVVLTTYSI 442
++++CP S L W E++ A Y+G + + + +DV+LTTY I
Sbjct: 374 SIIICPRSTLDNWYEEIKKWCTPMKAFK---YYGNKDQRKELNRNLLHSDFDVLLTTYEI 430
Query: 443 VTNE 446
V +
Sbjct: 431 VIKD 434
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 212 (79.7 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 48/127 (37%), Positives = 78/127 (61%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK--DFNT-DREITVMLMSLK 877
++FSQ TR+LD++++ Y R+DG S P +R V+ FN + + + L+S +
Sbjct: 646 LLFSQMTRLLDIIDDYCRWKNYPYLRIDG--STPGDERQVRINQFNEPNSKYFIFLLSTR 703
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
AG +G+N+ A VIL D +NP + QA+DRAHRIGQ + V V R +++VE++I++
Sbjct: 704 AGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVER 763
Query: 938 QDDKRKM 944
K K+
Sbjct: 764 AAKKLKL 770
Score = 94 (38.1 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 40/121 (33%), Positives = 65/121 (53%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L +L+ MLRR K ++ + +LPPK V SK + KKL SD L K
Sbjct: 528 QLHTILKPFMLRRLK---VEVEQ--SLPPKREIYIFVGMSKLQ----KKLYSDILSKNID 578
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLL---VKEYDF---DSVGKISGEMA---KRLP 668
+A T ++N +L +L++LR+ C+HP L ++E + + + + SG+M+ K LP
Sbjct: 579 VLNAMTGSKN--QMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLDKLLP 636
Query: 669 R 669
R
Sbjct: 637 R 637
Score = 79 (32.9 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 254 LEDLNQPKVEATLPDGLLSVN--LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKT- 310
L+D N+ EA + +++N + +Q L W+ Q ++ GILAD+ GLGKT
Sbjct: 300 LKDANEED-EAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKIN---GILADEMGLGKTL 355
Query: 311 --ISIIALIQMQRSLQSKS 327
IS++ ++ ++++ KS
Sbjct: 356 QTISLLCYLRFNKNIKKKS 374
Score = 77 (32.2 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSLHG-YKKLQAVLRA 565
L + WF +V+DEA IKN ++ ++ S+R RS ++ I+ LH K+L ++L
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSS---SVRFLRSENRLLITGTPLHNNLKELWSLLNF 494
Query: 566 IM 567
+M
Sbjct: 495 LM 496
Score = 69 (29.3 bits), Expect = 3.4e-26, Sum P(5) = 3.4e-26
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL----AKYDVVLTTYSI 442
++++CP S L W E++ A Y+G + + + +DV+LTTY I
Sbjct: 374 SIIICPRSTLDNWYEEIKKWCTPMKAFK---YYGNKDQRKELNRNLLHSDFDVLLTTYEI 430
Query: 443 VTNE 446
V +
Sbjct: 431 VIKD 434
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 269 (99.8 bits), Expect = 4.3e-26, Sum P(4) = 4.3e-26
Identities = 57/136 (41%), Positives = 88/136 (64%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T MLD++E L H +Y RLDG+ + R + FNTD++I V L+S +AG
Sbjct: 802 VLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNTDQDIFVFLLSTRAGG 861
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ +A+ VIL D+ NP + QA R HR+GQT+ V V +L +D++ED +L++ +
Sbjct: 862 LGINLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLISKDSIEDTMLRIGER 921
Query: 941 KRK----MVASAFGED 952
K K M A+ GE+
Sbjct: 922 KLKLEQEMTATQDGEE 937
Score = 82 (33.9 bits), Expect = 4.3e-26, Sum P(4) = 4.3e-26
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 265 TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
T P+ L S LK +Q I L W++ L GILAD+ GLGKTI I+ +
Sbjct: 418 TQPEILSSTFQLKPYQLIGLNWLVLLHQNKL---SGILADEMGLGKTIQAISFL 468
Score = 75 (31.5 bits), Expect = 4.3e-26, Sum P(4) = 4.3e-26
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+ PAS L W REL P + VL+Y+G + + + ++ +Y+++++TY+
Sbjct: 481 LITVPASTLDNWVRELNLWCP---SFKVLVYYGSADDRKYMRYEILNQIVEYNIIVSTYN 537
Query: 442 I 442
+
Sbjct: 538 L 538
Score = 48 (22.0 bits), Expect = 4.3e-26, Sum P(4) = 4.3e-26
Identities = 24/105 (22%), Positives = 46/105 (43%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621
+++ +LRR K + LP K + S+ + Y L L K K ++
Sbjct: 644 IMKPFILRRVKSEVLK-----QLPAKEEQVEFCAMSERQQELYSAL----LHKLKHSSNG 694
Query: 622 GTVNQNYANILLMLLRLRQACDHPLLVKE-YDFDSVGKISGEMAK 665
+ N+++ +LR+ +HPLL ++ Y + + +S M K
Sbjct: 695 E--KRELTNVMM---QLRKMSNHPLLHRQFYTTEKLKAMSKLMLK 734
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 261 (96.9 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 52/127 (40%), Positives = 81/127 (63%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYR---RLDGTMSLPARDRAVKDFNTDREITVMLMS 875
K ++F+Q+T++LDL+E+ L + + + RLDG+ + RD + FN + + V L S
Sbjct: 629 KVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLSS 688
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
+AG LG+N+VAA VIL+D WNP + QA+DR HRIGQ PV + R I+D++E+ ++
Sbjct: 689 TRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLI 748
Query: 936 KLQDDKR 942
KR
Sbjct: 749 SRSGSKR 755
Score = 76 (31.8 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 251 QAALEDLNQPKVEATLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGK 309
+A + N K+ L++ LK +Q L W++ T + L GILAD+ GLGK
Sbjct: 150 EAIEKSQNSSKITNNKQPKLITGGQLKDYQMDGLEWLI---TLFQNGLNGILADEMGLGK 206
Query: 310 TISIIALI 317
T+ I+ +
Sbjct: 207 TLQCISFL 214
Score = 64 (27.6 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY----DVVLTTYSIV 443
LVV P S L W E+ P + V Y G + ++ ++L + +++LT+Y I
Sbjct: 227 LVVVPVSTLSNWYNEIRKFAPK---IKVTKYIGTKQERNDIDLLQQQETTNIILTSYEIS 283
Query: 444 TNEVPK 449
+ K
Sbjct: 284 IRDFNK 289
Score = 64 (27.6 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 541 RSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEE 600
++ IK+ I + K L +L+ MLRR K I NLPPK L + +K +
Sbjct: 386 KNLIKLNIQETLI---KNLHTILKPFMLRRLKRDVIK-----NLPPKKEYLLHIPMTKLQ 437
Query: 601 WAFYKKLESDSL 612
Y +D L
Sbjct: 438 KKIYYDAVNDKL 449
Score = 46 (21.3 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 507 LAKVGWFRVVLDEAQTIKN 525
L K+ W +++DE +KN
Sbjct: 290 LVKINWKYLIVDEGHRLKN 308
Score = 41 (19.5 bits), Expect = 9.3e-24, Sum P(5) = 9.3e-24
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 622 GTVNQNYANILLMLLR-LRQACDHPL-LVKE-YDFDSVGKISGEM 663
GT QN N L LL + H L L ++ ++FD + +++GE+
Sbjct: 330 GTPLQNNLNELWSLLNFILPDIFHDLELFQQWFNFDELTELAGEL 374
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 261 (96.9 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 52/127 (40%), Positives = 81/127 (63%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYR---RLDGTMSLPARDRAVKDFNTDREITVMLMS 875
K ++F+Q+T++LDL+E+ L + + + RLDG+ + RD + FN + + V L S
Sbjct: 629 KVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLSS 688
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
+AG LG+N+VAA VIL+D WNP + QA+DR HRIGQ PV + R I+D++E+ ++
Sbjct: 689 TRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLI 748
Query: 936 KLQDDKR 942
KR
Sbjct: 749 SRSGSKR 755
Score = 76 (31.8 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 251 QAALEDLNQPKVEATLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGK 309
+A + N K+ L++ LK +Q L W++ T + L GILAD+ GLGK
Sbjct: 150 EAIEKSQNSSKITNNKQPKLITGGQLKDYQMDGLEWLI---TLFQNGLNGILADEMGLGK 206
Query: 310 TISIIALI 317
T+ I+ +
Sbjct: 207 TLQCISFL 214
Score = 64 (27.6 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY----DVVLTTYSIV 443
LVV P S L W E+ P + V Y G + ++ ++L + +++LT+Y I
Sbjct: 227 LVVVPVSTLSNWYNEIRKFAPK---IKVTKYIGTKQERNDIDLLQQQETTNIILTSYEIS 283
Query: 444 TNEVPK 449
+ K
Sbjct: 284 IRDFNK 289
Score = 64 (27.6 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 541 RSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEE 600
++ IK+ I + K L +L+ MLRR K I NLPPK L + +K +
Sbjct: 386 KNLIKLNIQETLI---KNLHTILKPFMLRRLKRDVIK-----NLPPKKEYLLHIPMTKLQ 437
Query: 601 WAFYKKLESDSL 612
Y +D L
Sbjct: 438 KKIYYDAVNDKL 449
Score = 46 (21.3 bits), Expect = 4.5e-26, Sum P(5) = 4.5e-26
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 507 LAKVGWFRVVLDEAQTIKN 525
L K+ W +++DE +KN
Sbjct: 290 LVKINWKYLIVDEGHRLKN 308
Score = 41 (19.5 bits), Expect = 9.3e-24, Sum P(5) = 9.3e-24
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 622 GTVNQNYANILLMLLR-LRQACDHPL-LVKE-YDFDSVGKISGEM 663
GT QN N L LL + H L L ++ ++FD + +++GE+
Sbjct: 330 GTPLQNNLNELWSLLNFILPDIFHDLELFQQWFNFDELTELAGEL 374
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 282 (104.3 bits), Expect = 4.7e-26, Sum P(5) = 4.7e-26
Identities = 57/143 (39%), Positives = 90/143 (62%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ T +LD++ + +Y RLDG+MS RD +K F++D E+ + L+S +A
Sbjct: 633 KVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRA 692
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ +A VI+ D WNP + QA DR HRIGQT+PV V RL +T++++IL+
Sbjct: 693 GGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRLITANTIDEKILERA 752
Query: 939 DDKRKMVASAFGEDQGGGTASRL 961
KRK+ +++ G+ + L
Sbjct: 753 SAKRKLEKMVIHKNKFKGSKAEL 775
Score = 70 (29.7 bits), Expect = 4.7e-26, Sum P(5) = 4.7e-26
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 297 LGGILADDQGLGKTISIIALIQM 319
+ GILAD+ GLGKTI IA I M
Sbjct: 252 INGILADEMGLGKTIQCIAHIAM 274
Score = 70 (29.7 bits), Expect = 4.7e-26, Sum P(5) = 4.7e-26
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432
LVV P S L W E + P+ +SVL+YHG K+ ++L K
Sbjct: 285 LVVAPLSTLPNWISEFKRFTPE---VSVLLYHGPQ--KERLDLVK 324
Score = 48 (22.0 bits), Expect = 4.7e-26, Sum P(5) = 4.7e-26
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 550 RNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609
+N LH L +L +LRR K + +PPK + + ++ AFY + +
Sbjct: 444 QNILH---MLHLILTPFLLRRLKSDVT-----LEVPPKKEIVVYAPLTNKQEAFYMAIVN 495
Query: 610 DSLKK 614
++ K
Sbjct: 496 KTIAK 500
Score = 44 (20.5 bits), Expect = 1.2e-25, Sum P(5) = 1.2e-25
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 610 DSLKKFKAFADAGTVNQNYANIL 632
D LK F+++ D T+ + NI+
Sbjct: 416 DDLKSFESWFDISTITSDAENIV 438
Score = 38 (18.4 bits), Expect = 4.7e-26, Sum P(5) = 4.7e-26
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 507 LAKVGWFRVVLDEAQTIKN 525
L + W +++DE IKN
Sbjct: 353 LQRFHWNYLIVDEGHRIKN 371
Score = 37 (18.1 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 442 IVTNEVPKQPSVDEEEADEKNGE 464
++T E+ ++ EEE ++K E
Sbjct: 44 VITKEMEEEEKNLEEEGEKKERE 66
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 281 (104.0 bits), Expect = 5.1e-26, Sum P(6) = 5.1e-26
Identities = 59/130 (45%), Positives = 83/130 (63%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++SQ TRM+DL+E + Y RLDG+ + R V DF +I V L+S +AG
Sbjct: 1131 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGG 1190
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ AA VI D WNPT + QA+DRAHR+GQT+ VTV RL + T+E+RIL+ +
Sbjct: 1191 LGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1250
Query: 941 K---RKMVAS 947
K ++MV S
Sbjct: 1251 KSEIQRMVIS 1260
Score = 72 (30.4 bits), Expect = 5.1e-26, Sum P(6) = 5.1e-26
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 257 LNQPKVEA--TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
L P + A +P + LK +Q + W+ + ++ GILAD+ GLGKT+
Sbjct: 506 LANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 562
Query: 314 IALI 317
IAL+
Sbjct: 563 IALL 566
Score = 59 (25.8 bits), Expect = 5.1e-26, Sum P(6) = 5.1e-26
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL-----------AKYDVV 436
L++ PAS L W +E VP VL Y G + + A + VV
Sbjct: 580 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 636
Query: 437 LTTYSIVTNEV 447
+T+Y +V +V
Sbjct: 637 ITSYQLVVQDV 647
Score = 55 (24.4 bits), Expect = 5.1e-26, Sum P(6) = 5.1e-26
Identities = 23/111 (20%), Positives = 49/111 (44%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K I N L +L +L+ MLRR K ++ + L K L + + Y
Sbjct: 733 KSAIDENQL---SRLHMILKPFMLRRIKKD-VENE----LSDKIEILMYCQLTSRQKLLY 784
Query: 605 KKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHPLLVKEYD 652
+ L++ + + G+ Q ++++ ++++ R+ C+HP L + +
Sbjct: 785 QALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQE 835
Score = 53 (23.7 bits), Expect = 5.1e-26, Sum P(6) = 5.1e-26
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 120 IANVASADYEKISSQ-QALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDT------FG 171
+ N+ DY+ + QALK A+ H T+S + ++ +R FG
Sbjct: 443 VVNITQEDYDSNHFKAQALKNAENAY-HIHQARTRSFDEDAKESRAAALRAANKSGTGFG 501
Query: 172 NAYHLAGPS 180
+Y LA PS
Sbjct: 502 ESYSLANPS 510
Score = 47 (21.6 bits), Expect = 5.1e-26, Sum P(6) = 5.1e-26
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 509 KVGWFRVVLDEAQTIKN 525
+V W +VLDEAQ +K+
Sbjct: 652 RVKWQYMVLDEAQALKS 668
Score = 40 (19.1 bits), Expect = 1.6e-24, Sum P(6) = 1.6e-24
Identities = 30/103 (29%), Positives = 44/103 (42%)
Query: 601 W-AFYKKLESD-SLKKFKAFADA-GTVNQNYA---NILLML---LRLRQACDHPLLVKEY 651
W A + L++ L + +++ D G Q Y + LL + L C PLL K
Sbjct: 923 WLALFLSLKASYRLHQLRSWGDPEGESQQKYLRNRDFLLGVNFPLSFPNLCSCPLL-KSL 981
Query: 652 DFDSVGK-ISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPP 693
F S K +SG D +I R TSS CC+ ++ P
Sbjct: 982 VFSSHCKAVSGYS------DQVIHQ-RRSATSSLRCCLLTELP 1017
Score = 40 (19.1 bits), Expect = 8.5e-20, Sum P(4) = 8.5e-20
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 454 DEEEADEKNGETYGLSSE 471
+EEE DE+ E LS E
Sbjct: 147 EEEEDDEEEEEELNLSRE 164
Score = 37 (18.1 bits), Expect = 1.7e-19, Sum P(4) = 1.7e-19
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 453 VDEEEADEKNGETYGLSSEFSVN 475
V EE + GET G SS +N
Sbjct: 72 VKEEPPNSLLGETSGASSSGMLN 94
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 281 (104.0 bits), Expect = 5.4e-26, Sum P(7) = 5.4e-26
Identities = 59/130 (45%), Positives = 83/130 (63%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++SQ TRM+DL+E + Y RLDG+ + R V DF +I V L+S +AG
Sbjct: 1125 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGG 1184
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
LG+N+ AA VI D WNPT + QA+DRAHR+GQT+ VTV RL + T+E+RIL+ +
Sbjct: 1185 LGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKE 1244
Query: 941 K---RKMVAS 947
K ++MV S
Sbjct: 1245 KSEIQRMVIS 1254
Score = 72 (30.4 bits), Expect = 5.4e-26, Sum P(7) = 5.4e-26
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 257 LNQPKVEA--TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
L P + A +P + LK +Q + W+ + ++ GILAD+ GLGKT+
Sbjct: 500 LANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 556
Query: 314 IALI 317
IAL+
Sbjct: 557 IALL 560
Score = 59 (25.8 bits), Expect = 5.4e-26, Sum P(7) = 5.4e-26
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL-----------AKYDVV 436
L++ PAS L W +E VP VL Y G + + A + VV
Sbjct: 574 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 630
Query: 437 LTTYSIVTNEV 447
+T+Y +V +V
Sbjct: 631 ITSYQLVVQDV 641
Score = 55 (24.4 bits), Expect = 5.4e-26, Sum P(7) = 5.4e-26
Identities = 23/111 (20%), Positives = 49/111 (44%)
Query: 545 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 604
K I N L +L +L+ MLRR K ++ + L K L + + Y
Sbjct: 727 KSAIDENQL---SRLHMILKPFMLRRIKKD-VENE----LSDKIEILMYCQLTSRQKLLY 778
Query: 605 KKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHPLLVKEYD 652
+ L++ + + G+ Q ++++ ++++ R+ C+HP L + +
Sbjct: 779 QALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQE 829
Score = 53 (23.7 bits), Expect = 5.4e-26, Sum P(7) = 5.4e-26
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 120 IANVASADYEKISSQ-QALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDT------FG 171
+ N+ DY+ + QALK A+ H T+S + ++ +R FG
Sbjct: 437 VVNITQEDYDSNHFKAQALKNAENAY-HIHQARTRSFDEDAKESRAAALRAANKSGTGFG 495
Query: 172 NAYHLAGPS 180
+Y LA PS
Sbjct: 496 ESYSLANPS 504
Score = 47 (21.6 bits), Expect = 5.4e-26, Sum P(7) = 5.4e-26
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 509 KVGWFRVVLDEAQTIKN 525
+V W +VLDEAQ +K+
Sbjct: 646 RVKWQYMVLDEAQALKS 662
Score = 38 (18.4 bits), Expect = 5.4e-26, Sum P(7) = 5.4e-26
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 642 CDHPLLVKEYDFDSVGK-ISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPP 693
C PLL K F S K +SG D +I R TSS CC+ ++ P
Sbjct: 967 CSCPLL-KSLVFSSHCKAVSGYS------DQVIHQ-RRSATSSLRCCLLTELP 1011
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 267 (99.0 bits), Expect = 7.1e-26, Sum P(5) = 7.1e-26
Identities = 53/129 (41%), Positives = 83/129 (64%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G + +++ Q TRM+ + E L +Y RLDG+ ++ +R V+ + T+ EI + ++S
Sbjct: 1251 GGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREMVQAWQTNPEIFIFMLS 1310
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
+AG LGLN+ +A VI D WNPT + QA+DRAHRIGQT+ V V RL R+T+E +IL
Sbjct: 1311 TRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKIL 1370
Query: 936 KLQDDKRKM 944
+ +K ++
Sbjct: 1371 ERAKEKEEI 1379
Score = 77 (32.2 bits), Expect = 7.1e-26, Sum P(5) = 7.1e-26
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 263 EATLPD-GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+ T+P +L L ++Q L W+ + ++ GILAD+ GLGKT+ I+++
Sbjct: 659 DITIPQPNMLKCTLKEYQLKGLNWLANLYEQGIN---GILADEMGLGKTVQSISVL 711
Score = 64 (27.6 bits), Expect = 7.1e-26, Sum P(5) = 7.1e-26
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY 433
LVV PAS L W +E+ VP+ VL Y G + KD L K+
Sbjct: 725 LVVTPASTLHNWQQEITKFVPE---FKVLPYWGNA--KDRKILRKF 765
Score = 59 (25.8 bits), Expect = 7.1e-26, Sum P(5) = 7.1e-26
Identities = 21/100 (21%), Positives = 44/100 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESD-SLKKF 615
++L +L+ MLRR K + + L K D + + Y++L S S+
Sbjct: 888 RRLHMILKPFMLRRIKKN-VQSE----LGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDT 942
Query: 616 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS 655
+ +++ ++++ R+ C+HP L + D +S
Sbjct: 943 DLLELESNSTSSDSSLANLVMQFRKVCNHPDLFERADVNS 982
Score = 56 (24.8 bits), Expect = 7.1e-26, Sum P(5) = 7.1e-26
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLRAI 566
K+ W ++LDEAQ IK+ + ++ +L + + PI +NS+ ++L A+L I
Sbjct: 798 KMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPI-QNSM---QELWALLHFI 853
Query: 567 M 567
M
Sbjct: 854 M 854
Score = 49 (22.3 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 160 NMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSL-MHGK 217
N N S RD+ + + + P +N+ G+++ V N+ + Y IL ++ M K
Sbjct: 1028 NYNKST-RDSIYSKFSIYNPENMNATGWLQGINVSPNE--LKHYSQKDILSRAIEMQNK 1083
Score = 40 (19.1 bits), Expect = 5.8e-24, Sum P(5) = 5.8e-24
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 580 PIINLPPKTISLTKVDFSKE 599
PI + PP T++ + ++F+ +
Sbjct: 1153 PIASAPPITVNCSSMNFTNK 1172
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 238 (88.8 bits), Expect = 7.6e-26, Sum P(5) = 7.6e-26
Identities = 51/140 (36%), Positives = 83/140 (59%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAG 879
++FSQ +R+LD++E+ +Y R+DG+ S R A+ ++N + E V L++ +AG
Sbjct: 510 LIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAG 569
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+V A VIL D WNP + QA+DRAHRIGQ + V V R + +E+++++
Sbjct: 570 GLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAA 629
Query: 940 DKRKMVASAFGEDQGGGTAS 959
K ++ + G TAS
Sbjct: 630 QKLRLDQLVIQQGTGKKTAS 649
Score = 83 (34.3 bits), Expect = 7.6e-26, Sum P(5) = 7.6e-26
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVEL----AKYDVVLTTYSI 442
L++ P S L W RE P+ ++VL+ HG T+ D V A++DV++T+Y +
Sbjct: 237 LIIVPKSTLDNWRREFLKWTPN---VNVLVLHGDKDTRADIVRNIILEARFDVLITSYEM 293
Query: 443 VTNE 446
V E
Sbjct: 294 VIRE 297
Score = 73 (30.8 bits), Expect = 7.6e-26, Sum P(5) = 7.6e-26
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLH--CLGGILADDQGLGKTISIIALI 317
P + S L +Q L W++ SLH L GILAD+ GLGKT+ I+ +
Sbjct: 176 PSFVKSGKLRDYQVQGLNWLI-----SLHENKLSGILADEMGLGKTLQTISFL 223
Score = 67 (28.6 bits), Expect = 7.6e-26, Sum P(5) = 7.6e-26
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L +VL +LRR K D + +L PK + V + + +YK L K
Sbjct: 387 QQLHSVLNPFLLRRVKA---DVEK--SLLPKIETNVYVGMTDMQIQWYKSLLE---KDID 438
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
A A + +L ++++LR+ C+HP L
Sbjct: 439 AVNGAVGKREGKTRLLNIVMQLRKCCNHPYL 469
Score = 58 (25.5 bits), Expect = 7.6e-26, Sum P(5) = 7.6e-26
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGYKKLQAVLR 564
L ++ W +V+DEA IKN ++ +++ +K + P+ +N+LH +L A+L
Sbjct: 301 LKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPL-QNNLH---ELWALLN 356
Query: 565 AIM 567
++
Sbjct: 357 FLL 359
Score = 58 (25.5 bits), Expect = 2.5e-24, Sum P(5) = 2.5e-24
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 148 HSLNTKSKSSVENM--NSSQIRDTFGNAYHLA-GPSTVNSKGYIRDYYVKKNDDDIMMYE 204
H T+ + E M +I DT+ ++ PS V S G +RDY V+ + I ++E
Sbjct: 142 HHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPSFVKS-GKLRDYQVQGLNWLISLHE 200
Query: 205 G--NRILPSSLMHGKSVSMTQFGG 226
+ IL + GK++ F G
Sbjct: 201 NKLSGILADEMGLGKTLQTISFLG 224
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 282 (104.3 bits), Expect = 9.0e-26, Sum P(4) = 9.0e-26
Identities = 55/126 (43%), Positives = 84/126 (66%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ TRMLD++ + + + RLDG+MS R++ + FNTD ++ + L+S +A
Sbjct: 617 KVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLVSTRA 676
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ AA VI+ D WNP ++ QA DR HRIGQT+PV V RL +T++ +I++
Sbjct: 677 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 736
Query: 939 DDKRKM 944
KRK+
Sbjct: 737 AAKRKL 742
Score = 75 (31.5 bits), Expect = 9.0e-26, Sum P(4) = 9.0e-26
Identities = 25/101 (24%), Positives = 52/101 (51%)
Query: 587 KTISLTKVD-FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL--MLLRLRQACD 643
K+I +K+D F E +++ + + + +A + ++ N+ L +++ LR+ C+
Sbjct: 514 KSIDYSKIDDFPNELEKLISQIQPE-VDRERAVVETNIPVESEVNLKLQNIMMLLRKCCN 572
Query: 644 HPLLVKEYDFDSVG---KISGEMAKRLPRDMLID-LLSRLE 680
HP L+ EY D V KI E+ + +++D +L L+
Sbjct: 573 HPYLI-EYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELK 612
Score = 68 (29.0 bits), Expect = 9.0e-26, Sum P(4) = 9.0e-26
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 297 LGGILADDQGLGKTISIIALIQM 319
+ GILAD+ GLGKT+ IA I +
Sbjct: 242 INGILADEMGLGKTVQCIATIAL 264
Score = 50 (22.7 bits), Expect = 3.2e-23, Sum P(4) = 3.2e-23
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 550 RNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609
+N LH L +L +LRR K + +PPK + SK++ FY + +
Sbjct: 434 QNVLH---MLHQILTPFLLRRLKSDVA-----LEVPPKREVVVYAPLSKKQEVFYTAIVN 485
Query: 610 DSLKKFKAFADAGTV 624
++ ++ TV
Sbjct: 486 RTITNMFGSSEKETV 500
Score = 41 (19.5 bits), Expect = 9.0e-26, Sum P(4) = 9.0e-26
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVAR 532
W +++DE IKN + ++ R
Sbjct: 348 WKYLIVDEGHRIKNMKCRLIR 368
Score = 37 (18.1 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 537 LRAKRSTIKIPISRNSLHGYKKLQAVLR 564
L K+ ++K+ +NS+ ++ V+R
Sbjct: 100 LERKKESLKVTKGKNSIDASEENTVVMR 127
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 235 (87.8 bits), Expect = 9.6e-26, Sum P(5) = 9.6e-26
Identities = 51/126 (40%), Positives = 79/126 (62%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++FSQ RMLD++ + L+ Q++RLDG++ R +A+ FN + E L+S +AG
Sbjct: 816 LIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAG 875
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ +A V++ D WNP + QA RAHRIGQ + V + RL + TVE+ I++
Sbjct: 876 GLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEDIIERA- 934
Query: 940 DKRKMV 945
K+KMV
Sbjct: 935 -KKKMV 939
Score = 112 (44.5 bits), Expect = 9.6e-26, Sum P(5) = 9.6e-26
Identities = 40/132 (30%), Positives = 69/132 (52%)
Query: 554 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 613
+GY+ L VL +LRR K D + +LP K + +VD S ++ FYK + + +
Sbjct: 689 NGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQILRVDMSAQQKQFYKWILT---R 740
Query: 614 KFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRD--- 670
FKA + GT + + L +++ L++ C+H L+K+ + D E + L R
Sbjct: 741 NFKALSK-GTRGSS-SGFLNIVMELKKCCNHAFLIKQPE-DGENDAPQEHLQSLVRGGGK 797
Query: 671 -MLID-LLSRLE 680
+L+D LL+RL+
Sbjct: 798 LVLLDKLLTRLK 809
Score = 70 (29.7 bits), Expect = 9.6e-26, Sum P(5) = 9.6e-26
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT--KD-----P-VELAKYDVVL 437
+VV P S L W RE + PD ++V++Y G SR +D P + K++ +L
Sbjct: 542 IVVVPLSTLTSWQREFDTWAPD---MNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNALL 598
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 599 TTYEILLKD 607
Score = 63 (27.2 bits), Expect = 9.6e-26, Sum P(5) = 9.6e-26
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q + W+ R C ILAD+ GLGKTI I+ +
Sbjct: 486 NLELRDYQLDGVNWLAHSWCR---CNSVILADEMGLGKTIQTISFL 528
Score = 51 (23.0 bits), Expect = 9.6e-26, Sum P(5) = 9.6e-26
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGYKKLQAV 562
G L + W + +DEA +KN + + + R+ + P+ +NSL K+L ++
Sbjct: 609 GVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPL-QNSL---KELWSL 664
Query: 563 LRAIM 567
L +M
Sbjct: 665 LHFLM 669
Score = 41 (19.5 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 262 VEATLP---DGLLSVNLLKHQKIALAWMLQKETRSL 294
VE +LP + +L V++ QK W+L + ++L
Sbjct: 710 VEKSLPAKVEQILRVDMSAQQKQFYKWILTRNFKAL 745
Score = 38 (18.4 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 598 KEEWAFYKKLESDSLKKFKAFAD 620
KE W+ L SD + ++ F D
Sbjct: 659 KELWSLLHFLMSDKFESWEDFED 681
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 226 (84.6 bits), Expect = 1.2e-25, Sum P(5) = 1.2e-25
Identities = 54/141 (38%), Positives = 78/141 (55%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T+ + ++E+ L Y RLDGT R ++ FN ++ V L+S +AG
Sbjct: 1118 LLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAG 1177
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ A V++ D WNP + QA DRAHRIGQ V V RL ++VE+RIL
Sbjct: 1178 GLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAAR 1237
Query: 936 -KLQDDKRKMVASAFGEDQGG 955
KL D++ + A F + G
Sbjct: 1238 YKLNMDEKVIQAGMFDQKSTG 1258
Score = 87 (35.7 bits), Expect = 1.2e-25, Sum P(5) = 1.2e-25
Identities = 38/143 (26%), Positives = 68/143 (47%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + YK ++S +
Sbjct: 985 RRLHKVLRPFLLRRLKKE-VEHQ----LPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTD 1039
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLL---VKEYDFDSVGK---ISGEMAKRLPR 669
++ G + A L+ +++LR+ C+HP + ++E D G +SG R+
Sbjct: 1040 G-SEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSG 1098
Query: 670 DM-LID-LLSRLE-TSSAICCVC 689
L+D +L +L+ T+ + C
Sbjct: 1099 KFELLDRILPKLKATNHRVLLFC 1121
Score = 80 (33.2 bits), Expect = 1.2e-25, Sum P(5) = 1.2e-25
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 263 EATLPDGLLSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
E + + VN LK +I L W++ +L+ GILAD+ GLGKTI I+L+
Sbjct: 759 EKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTISLV 812
Score = 77 (32.2 bits), Expect = 1.2e-25, Sum P(5) = 1.2e-25
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG---GSRT-KDPVELAKYDVVLTTYSIV 443
L++ P S L W E E P A+ V+ Y G G R ++ + K++V+LTTY V
Sbjct: 826 LIIVPLSTLPNWVLEFEKWAP---AVGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYV 882
Query: 444 TNE 446
+
Sbjct: 883 IKD 885
Score = 58 (25.5 bits), Expect = 1.2e-25, Sum P(5) = 1.2e-25
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 889 LAKIQWKYMIIDEGHRMKNHHCKLTQ 914
Score = 43 (20.2 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 694 EDSVVT-MCGHVFCYQCASEYITGDD 718
E S+V M HV QC + +TGDD
Sbjct: 645 EGSIVADMRVHVV-EQCTGKKLTGDD 669
Score = 40 (19.1 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++PDK
Sbjct: 995 LLRRLKKEVEHQLPDK 1010
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 251 (93.4 bits), Expect = 1.3e-25, Sum P(5) = 1.3e-25
Identities = 50/122 (40%), Positives = 79/122 (64%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAG 879
++FSQ +MLD++ + + Y+RLDGT+ +R A++ +N D ++S +AG
Sbjct: 776 LIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPSASRRLAIEHYNAPDSSDFAFILSTRAG 835
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N++ A VIL D WNP + QA+ RAHRIGQT+PV+V RL +DTVE+ +++
Sbjct: 836 GLGINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRLVSKDTVEEEVIERAR 895
Query: 940 DK 941
+K
Sbjct: 896 NK 897
Score = 104 (41.7 bits), Expect = 1.3e-25, Sum P(5) = 1.3e-25
Identities = 36/128 (28%), Positives = 65/128 (50%)
Query: 523 IKNHRTQVARACCSLRAKRSTIKIPISRNSLHGYKKLQAVLRAI---MLRRTKGTFIDGQ 579
I+N+ +++ L + + NS +KL + +AI MLRRTK T ++
Sbjct: 612 IQNNLAELSALLDFLNPGLVNVDADMDLNSEAASEKLAELTKAISPFMLRRTK-TKVES- 669
Query: 580 PIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLR 639
+LPPKT + +V+ S + +YK + L K A + GT Q + +L +++ L+
Sbjct: 670 ---DLPPKTEKIIRVELSDVQLEYYKNI----LTKNYAALNEGTKGQKQS-LLNIMMELK 721
Query: 640 QACDHPLL 647
+A +HP +
Sbjct: 722 KASNHPFM 729
Score = 64 (27.6 bits), Expect = 1.3e-25, Sum P(5) = 1.3e-25
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV---ELA--------KYDVV 436
+VV P S + WA ++ PD L+ ++Y+G +++ + EL K++V+
Sbjct: 499 VVVVPLSTMPSWAETFDNWSPD---LNYVVYNGNEASRNVLKEYELMVDGNPRRPKFNVL 555
Query: 437 LTTYSIV 443
LTTY V
Sbjct: 556 LTTYEYV 562
Score = 61 (26.5 bits), Expect = 1.3e-25, Sum P(5) = 1.3e-25
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 300 ILADDQGLGKTISIIALIQMQRSLQ 324
+LAD+ GLGKT+ +A I R ++
Sbjct: 468 VLADEMGLGKTVQTVAFISWLRHVR 492
Score = 47 (21.6 bits), Expect = 5.1e-22, Sum P(4) = 5.1e-22
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 449 KQPSVDEEEADEKNGETYGL 468
K PSVD+ + +N + YGL
Sbjct: 109 KSPSVDDADFIRQNPDLYGL 128
Score = 44 (20.5 bits), Expect = 1.3e-25, Sum P(5) = 1.3e-25
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQV 530
L++ W + +DEA +KN +Q+
Sbjct: 569 LSQFNWQFMAVDEAHRLKNRDSQL 592
Score = 38 (18.4 bits), Expect = 4.2e-21, Sum P(4) = 4.2e-21
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 445 NEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
++ P + + +D+ + + YG S + KR+++
Sbjct: 167 SKAPTRSATQSTFSDDSDSDEYGGSRARASKAKRRRL 203
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 260 (96.6 bits), Expect = 1.5e-25, Sum P(5) = 1.5e-25
Identities = 58/150 (38%), Positives = 85/150 (56%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++F+Q T+MLD++E LN H Y RLDG+ + R ++ FN D+ I ++S ++G
Sbjct: 1678 LIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGG 1737
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
+G+N+ A VI D WNPT + QA DR HRIGQTR V + RL T+E ILK +
Sbjct: 1738 VGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQ 1797
Query: 941 KRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
KR + A + G T + ++ LF
Sbjct: 1798 KRMLSDMAI--EGGNFTTTYFKSSTIKDLF 1825
Score = 106 (42.4 bits), Expect = 1.5e-25, Sum P(5) = 1.5e-25
Identities = 36/91 (39%), Positives = 49/91 (53%)
Query: 234 SGSADERAVGGDERLIYQAALEDLNQPK---VEAT---LP-DGLLSVNLLKHQKIALAWM 286
SGS + D+ L AAL + QPK + +T P LL +L ++Q I L W+
Sbjct: 866 SGSTAGASGNKDDMLNDAAALAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWL 925
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALI 317
+ R L+ GILAD+ GLGKTI IAL+
Sbjct: 926 VTMNERKLN---GILADEMGLGKTIQTIALL 953
Score = 60 (26.2 bits), Expect = 1.5e-25, Sum P(5) = 1.5e-25
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PVELAK---YDVVLTTYSI 442
L+V P+SV+ W E + P +L Y+G + + V K + V +T+Y +
Sbjct: 967 LIVVPSSVMLNWEMEFKKWCP---GFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKL 1023
Query: 443 VTNE 446
V +
Sbjct: 1024 VVQD 1027
Score = 59 (25.8 bits), Expect = 1.5e-25, Sum P(5) = 1.5e-25
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L V+R +LRR K ++ Q +P K + S + Y+ S + K +
Sbjct: 1124 RLHKVIRPFLLRRLKKE-VEKQ----MPKKYEHVITCRLSNRQRYLYEDFMSRA--KTRE 1176
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHP 645
G N +++ +L++LR+ C+HP
Sbjct: 1177 TLQTG----NLLSVINVLMQLRKVCNHP 1200
Score = 56 (24.8 bits), Expect = 1.5e-25, Sum P(5) = 1.5e-25
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 512 WFRVVLDEAQTIKNHRTQ 529
W ++LDEAQ IKN ++Q
Sbjct: 1036 WKYLILDEAQNIKNFKSQ 1053
Score = 39 (18.8 bits), Expect = 1.6e-22, Sum P(4) = 1.6e-22
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 587 KTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
K + + F +++W + E+ ++K FK+
Sbjct: 1022 KLVVQDQQSFRRKKWKYLILDEAQNIKNFKS 1052
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 253 (94.1 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 58/158 (36%), Positives = 86/158 (54%)
Query: 798 DLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHC--IQYRRLDGTMSLP 854
D NGS++ + + ++F Q MLD+VE+ L H + Y RLDG++
Sbjct: 453 DCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPG 512
Query: 855 ARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 914
R V FN D I V+L++ G LGLN+ A V+ ++ WNP + QA+DRAHRIG
Sbjct: 513 QRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 572
Query: 915 QTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGED 952
Q R V V RL R T+E++I+ LQ K + + ++
Sbjct: 573 QKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQE 610
Score = 77 (32.2 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L K+Q+ + W+ LH GIL DD GLGKT+ I ++
Sbjct: 90 INAELRKYQQDGVNWLAFLNKYKLH---GILCDDMGLGKTLQSICIL 133
Score = 69 (29.3 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 16/63 (25%), Positives = 35/63 (55%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYDVVLTTYSIVT 444
+LVVCP ++ W E+ K + L+ L Y G R + ++ ++++++ +Y +V
Sbjct: 157 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 215
Query: 445 NEV 447
N++
Sbjct: 216 NDI 218
Score = 56 (24.8 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSLHGYKKLQAVLRAIMLRRTKG 573
+LDE IKN +T++++A L A I PI N L + ++ + +
Sbjct: 230 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 289
Query: 574 TFIDGQPII 582
G+PI+
Sbjct: 290 AARYGKPIL 298
Score = 42 (19.8 bits), Expect = 1.7e-25, Sum P(5) = 1.7e-25
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 630 NILLMLLRLRQACDHPLLV 648
++ L LR+ C+HP LV
Sbjct: 395 HVFQALQYLRKLCNHPALV 413
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 213 (80.0 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 374 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 433
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 434 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 493
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA----SRLTVEDL 966
D+ LKL DK ++ S G D G T S+ +EDL
Sbjct: 494 FDKASLKLGLDKA-VLQSMSGRD-GNITGIQQFSKKEIEDL 532
Score = 118 (46.6 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 245 QKLQAILKPMMLRRLKE---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 295
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G + N N+L ++ LR+ C+HP L+
Sbjct: 296 SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 327
Score = 70 (29.7 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 37 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 77
Score = 56 (24.8 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 89 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 144
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 145 KFDALITTFEMILSDCPELREIE 167
Score = 53 (23.7 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L ++ W V++DEA +KN ++
Sbjct: 160 CPELREIEWRCVIIDEAHRLKNRNCKL 186
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 258 (95.9 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 72/211 (34%), Positives = 107/211 (50%)
Query: 768 EYISSKIRTVLDILHTQC-----ELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIV 822
+Y+ K + D+ H +L C I + G+ G+ A + P +++V
Sbjct: 1637 QYLQEKKSYLRDVSHAPKLSALKDLLLDCGI-GVEPTEGNLGAGASYVS-----PHRALV 1690
Query: 823 FSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG 879
F Q MLD+V++ + Q +Q+ RLDG + R V FN+D V+L++ G
Sbjct: 1691 FCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLLTTSVG 1750
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LGLN+ A VI ++ WNP + QA+DRAHRIGQ + V V RL R T+E++IL LQ
Sbjct: 1751 GLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQR 1810
Query: 940 DKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
K VAS Q G + + + L LF
Sbjct: 1811 FKID-VASTVVNQQNAGL-NTMDTDQLLDLF 1839
Score = 84 (34.6 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 235 GSADERAVGGDERLIYQAALEDLNQPKVEA-TLPDGLLSVNLLKHQKIALAWMLQKETRS 293
G +++ G D + + + L+ KVE LP + L +Q+ + W+ +
Sbjct: 1280 GLSEKLLEGRDRERKFMSQM--LDSRKVEEFKLPVAI-KAELRPYQQEGVNWLAFLNRYN 1336
Query: 294 LHCLGGILADDQGLGKTISIIALIQMQRSLQSK--SKTE 330
LH GIL DD GLGKT+ I ++ ++++ +KT+
Sbjct: 1337 LH---GILCDDMGLGKTLQTICIVASDHHMRAEDFAKTQ 1372
Score = 83 (34.3 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHG--GSRTKDPVELAKYDVVLTTYSIVT 444
+L++CP S+ W +E++ P L+ + Y G R+K LA D+V+T+Y I
Sbjct: 1381 SLIICPPSLSGHWQQEVKQYAP---FLNCVAYVGPPAERSKLQGSLADADIVVTSYDICR 1437
Query: 445 NE 446
N+
Sbjct: 1438 ND 1439
Score = 59 (25.8 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 21/79 (26%), Positives = 33/79 (41%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSLHGYKKLQAVLR 564
L + W VLDE IKN + +V A + + I PI N L + ++
Sbjct: 1443 LRPISWNYCVLDEGHLIKNPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLFDFLMP 1502
Query: 565 AIMLRRTKGTFID--GQPI 581
+ T+ F+D +PI
Sbjct: 1503 GFL--GTEKVFLDRFAKPI 1519
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 275 (101.9 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 54/129 (41%), Positives = 85/129 (65%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G + +++SQ+T+M++++E+ + +Y RLDG+ L R V DF +D I L+S
Sbjct: 1782 GGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMVDDFQSDPSIFAFLLS 1841
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
+A +G+N+ +A VI D WNPT ++QA DRAHR+GQTRPVTV RL ++T+E++IL
Sbjct: 1842 TRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKIL 1901
Query: 936 KLQDDKRKM 944
K K ++
Sbjct: 1902 KRAKQKHQI 1910
Score = 77 (32.2 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+L+ +L +Q + W++ + ++ GILAD+ GLGKTI IA++
Sbjct: 1157 ILNADLKPYQLKGMTWIVNLYDQGIN---GILADEMGLGKTIQSIAVL 1201
Score = 66 (28.3 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 22/103 (21%), Positives = 45/103 (43%)
Query: 554 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 613
H +L +L+ MLRR K ++ + +P KT + + + Y+ + S+ +
Sbjct: 1374 HQLNRLHMILKPFMLRRIKRD-VENE----MPSKTEVEVYCNLTHRQKKLYQSIRSN-IS 1427
Query: 614 KFKAFADAGTVNQNYANILL-MLLRLRQACDHPLLVKEYDFDS 655
+ A Q L+ +++ R+ C+HP K + +S
Sbjct: 1428 ITELLGGASFSEQGSMKALMNFVMQFRKVCNHPETFKRSECES 1470
Score = 56 (24.8 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-------DPVEL----AKYDVV 436
L+V P S L W E VP A V+ Y G + + +P +L + + V+
Sbjct: 1215 LIVTPKSTLHNWKNEFAKFVP---AFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVL 1271
Query: 437 LTTYSIVTNE 446
+T+Y+++ +
Sbjct: 1272 ITSYNVIVRD 1281
Score = 50 (22.7 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 26/104 (25%), Positives = 45/104 (43%)
Query: 128 YEKISSQQALKRT-LPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLA-GPSTVNSK 185
Y SS ++ R+ LP ++ N +S + + N N++ + N Y+ G ++ NS
Sbjct: 83 YLSSSSSRSRSRSPLPPLNNINNGNQQSNNFINNKNNNNNFNNINNNYNNNNGINSSNSN 142
Query: 186 GYIRDYYVKKNDDDIMMYEGNRILPSSLMHGK--SVSMTQFGGP 227
KN ++ + ILP ++G S S QF P
Sbjct: 143 NSSNSSNKSKNSNNNIP----NILPYISLNGSGSSSSSKQFSLP 182
Score = 46 (21.3 bits), Expect = 2.6e-25, Sum P(6) = 2.6e-25
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLRAI 566
++ W +VLDEA IK+ + + S + + PI +NS+ +L A+L I
Sbjct: 1287 RLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPI-QNSM---AELWALLHFI 1342
Query: 567 M 567
M
Sbjct: 1343 M 1343
Score = 43 (20.2 bits), Expect = 1.3e-24, Sum P(6) = 1.3e-24
Identities = 16/98 (16%), Positives = 42/98 (42%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQP 147
++++ N +++ + N N +N +N + +D + S ++ R+
Sbjct: 314 NNNNNSGNNNNSNNNSNNNNNNSNNSNNINNN-SNNSRSDRDSRSDRERSGRSDRESRGD 372
Query: 148 HSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSK 185
N S SS ++N++ + N L+ S+ +++
Sbjct: 373 SKSNRSSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNR 410
Score = 42 (19.8 bits), Expect = 1.6e-24, Sum P(6) = 1.6e-24
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 94 SNGQADDSHYLSGNKNVGQLQTVNPRIA--NVASADYEKISSQQALKRTLPAFPQPHSLN 151
SN ++ S+ S N N + + P I+ S+ K S LK T + + +
Sbjct: 141 SNNSSNSSNK-SKNSN-NNIPNILPYISLNGSGSSSSSKQFSLPPLKSTTTSSSSNSTSS 198
Query: 152 TKSKSSVENMNSSQ-------IRDTFGN 172
+ S+SS + +SS I+ FGN
Sbjct: 199 SSSRSSKSHSSSSSSSSSSYPIKSIFGN 226
Score = 39 (18.8 bits), Expect = 6.1e-21, Sum P(4) = 6.1e-21
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 395 VLRQWARELEDKVPDKAALSV 415
+LR+ R++E+++P K + V
Sbjct: 1387 MLRRIKRDVENEMPSKTEVEV 1407
Score = 37 (18.1 bits), Expect = 5.1e-24, Sum P(6) = 5.1e-24
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 145 PQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDD 198
P+ +S +++SK + +SS + + N+ + S YIR +DD
Sbjct: 746 PKYNSSSSRSKDRYGSSSSS--KSSKYNSSSSSSSSRSKDNKYIRPSIFSSDDD 797
Score = 37 (18.1 bits), Expect = 5.1e-24, Sum P(6) = 5.1e-24
Identities = 18/87 (20%), Positives = 37/87 (42%)
Query: 91 HQMSNGQADDSHYLSGNKNVGQLQTVNPRIAN---VASADYEKIS-SQQALKRTLPAFPQ 146
+ ++NG +++++ N +N N + S++ S S K + P
Sbjct: 101 NNINNGNQQSNNFINNKNNNNNFNNINNNYNNNNGINSSNSNNSSNSSNKSKNSNNNIPN 160
Query: 147 --PH-SLN-TKSKSSVENMNSSQIRDT 169
P+ SLN + S SS + + ++ T
Sbjct: 161 ILPYISLNGSGSSSSSKQFSLPPLKST 187
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 227 (85.0 bits), Expect = 3.7e-25, Sum P(5) = 3.7e-25
Identities = 42/118 (35%), Positives = 77/118 (65%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++F+Q +ML+++E + ++ Y ++DGT ++ +R + FN +++I V +++ + G
Sbjct: 837 LLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQNKDIFVFILTTRVGG 896
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
LG+N+ A+ V++ D WNP+T+ QA +RA RIGQ + VTV RL T+E++I Q
Sbjct: 897 LGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQ 954
Score = 101 (40.6 bits), Expect = 3.7e-25, Sum P(5) = 3.7e-25
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQGLGKTISIIALI 317
G L L K+Q+ + WM + LHC GGIL D+ GLGKTI IIA +
Sbjct: 478 GFLWKKLFKYQQTGVRWMWE-----LHCQQAGGILGDEMGLGKTIQIIAFL 523
Score = 79 (32.9 bits), Expect = 3.7e-25, Sum P(5) = 3.7e-25
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHG-GSRT--KD---PVELAKYDVVLTTY 440
T++VCPA+V+ QW +E P V + H GS T K+ P +A + +++T+Y
Sbjct: 546 TVIVCPATVMHQWVKEFHTWWPP---FRVAVLHDTGSFTSKKEKLIPEIVASHGILITSY 602
Query: 441 SIV 443
S +
Sbjct: 603 SYI 605
Score = 56 (24.8 bits), Expect = 3.7e-25, Sum P(5) = 3.7e-25
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLR 538
+ + W V+LDE I+N V AC R
Sbjct: 612 IQRYDWHYVILDEGHKIRNPNAGVTTACKQFR 643
Score = 56 (24.8 bits), Expect = 3.7e-25, Sum P(5) = 3.7e-25
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 598 KEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 645
K E + +L D + ++ F D+ V Q + L+ LR+ C+HP
Sbjct: 736 KNEQVLFCRLTEDQRQVYQTFLDSKEVYQILNGDMQVFSGLIALRKICNHP 786
Score = 40 (19.1 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 451 PSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
PS EEE +K G+ + + R++I
Sbjct: 411 PSSSEEEDSQKGGKVKKCKDDGDIECYRQRI 441
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 246 (91.7 bits), Expect = 5.8e-25, Sum P(5) = 5.8e-25
Identities = 52/125 (41%), Positives = 77/125 (61%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM-SLKAG 879
++FSQ TRMLD++E+ + Y RLDG R+R +++FN D + M S +AG
Sbjct: 451 LIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAG 510
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VI+ D WNP + QA+DRAHRIGQ + V V RL TVE++I++ +
Sbjct: 511 GLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAE 570
Query: 940 DKRKM 944
K ++
Sbjct: 571 VKLRL 575
Score = 75 (31.5 bits), Expect = 5.8e-25, Sum P(5) = 5.8e-25
Identities = 23/89 (25%), Positives = 49/89 (55%)
Query: 245 DERLIYQ-AALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
DE L+ + +A +++ + +A+ P + S + +Q L WM+ ++ GILAD
Sbjct: 100 DEELLAEDSATKEIF--RFDAS-PAYIKSGEMRDYQIRGLNWMISLYENGIN---GILAD 153
Query: 304 DQGLGKTISIIALIQMQRSLQSKSKTEVL 332
+ GLGKT+ I+L+ + ++++ ++
Sbjct: 154 EMGLGKTLQTISLLGYLKHFKNQAGPHIV 182
Score = 65 (27.9 bits), Expect = 5.8e-25, Sum P(5) = 5.8e-25
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L AVL+ +LRR K ++ + L PK V SK + +Y K+ LK
Sbjct: 331 RLHAVLKPFLLRRLKAE-VEKR----LKPKKEMKIFVGLSKMQRDWYTKV---LLKDIDV 382
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG V + +LM +LR+ +HP L
Sbjct: 383 VNGAGKVEKMRLQNILM--QLRKCTNHPYL 410
Score = 61 (26.5 bits), Expect = 5.8e-25, Sum P(5) = 5.8e-25
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT--KDPVELAKYDVVLTTYSIVTN 445
+V+ P S L+ W E + P A+ ++ T +D + ++DV +T+Y +
Sbjct: 181 IVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIR 240
Query: 446 E 446
E
Sbjct: 241 E 241
Score = 60 (26.2 bits), Expect = 5.8e-25, Sum P(5) = 5.8e-25
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLR-AKRSTIKIPISRNSLHGYKKLQAVLRAIM 567
K W +V+DEA IKN +++++ + A R I +N+LH +L A+L ++
Sbjct: 247 KFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLH---ELWALLNFLL 303
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 250 (93.1 bits), Expect = 6.2e-25, Sum P(5) = 6.2e-25
Identities = 60/190 (31%), Positives = 104/190 (54%)
Query: 767 NE-YISSKIRTVLDI-LHTQCELNTKCSIVEIHDLAGSNGSSAVHSK----SPIEGPIKS 820
NE YI ++ + DI LH C + ++ D + + K + +E +
Sbjct: 721 NELYIFEDMQYMSDIELHNLCCKFPSINSFQLKDEPWMDATKVRKLKKLLTNAVENGDRV 780
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ+T++LD+++ + +++ R DG+ + R + F D I V L+S KAG
Sbjct: 781 VLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTKAGG 840
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
G+N+ A+ VIL D+ +NP + QA DRAHR+GQ + VTV + ++DT+E+ I +L +
Sbjct: 841 FGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANA 900
Query: 941 KRKMVASAFG 950
K + A+ G
Sbjct: 901 KIALDATLSG 910
Score = 73 (30.8 bits), Expect = 6.2e-25, Sum P(5) = 6.2e-25
Identities = 29/104 (27%), Positives = 42/104 (40%)
Query: 223 QFGGPSDLAYRSGSADERAVG--GDERLIYQAALEDLNQPKVEA--TLPDGLLS--VNLL 276
Q GG + A G+ L+ ++ P + T P S + L
Sbjct: 329 QLGGKIQRGIEAWGLSNTATSDEGETSLVNFDQMKSFGTPANSSFITTPPASFSPDIKLQ 388
Query: 277 KHQKIALAWM-LQKETRSLHCLGGILADDQGLGKTISIIALIQM 319
+Q I + W+ L E + L GILAD+ GLGKT IA +
Sbjct: 389 DYQIIGINWLYLLYELK----LAGILADEMGLGKTCQTIAFFSL 428
Score = 70 (29.7 bits), Expect = 6.2e-25, Sum P(5) = 6.2e-25
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA------KYDVVLTTYS 441
LV+ PAS + W RE P L + +Y+G ++ + Y+V+LTTY
Sbjct: 439 LVIAPASTMENWLREFAKFCPK---LKIELYYGSQVEREEIRERINSNKDSYNVMLTTYR 495
Query: 442 I 442
+
Sbjct: 496 L 496
Score = 69 (29.3 bits), Expect = 6.2e-25, Sum P(5) = 6.2e-25
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+ + ++ +LRR K +D LP KT + +FS+EE Y S + +
Sbjct: 602 RAKMMMAPFVLRRKKSQVLDA-----LPKKTRIIEFCEFSEEERRRYDDFASK--QSVNS 654
Query: 618 FADAGTVNQNY---ANIL-------LMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRL 667
D + N AN+ +L++LR+ DHP+L + + D + + +MAK +
Sbjct: 655 LLDENVMKTNLDTNANLAKKKSTAGFVLVQLRKLADHPMLFRIHYKDDILR---QMAKAI 711
Score = 46 (21.3 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 433 YDVVLTTYSIVTNEVPKQPS-VDEEEADEK---NGETYGLSSEFSVNKK 477
Y V S + PK PS +D+EEA + + + LSS+ + N+K
Sbjct: 125 YGAVYNALSQFSETEPKMPSYMDDEEASDSLPLSLSSQSLSSQVT-NQK 172
Score = 41 (19.5 bits), Expect = 6.2e-25, Sum P(5) = 6.2e-25
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 131 ISSQQALKRTLPAFPQPHSLNTKSKSSVENMNS 163
+SSQ + P PH L + + + N+ +
Sbjct: 159 LSSQSLSSQVTNQKPAPHRLTMRERYAANNLTN 191
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 240 (89.5 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
Identities = 56/152 (36%), Positives = 87/152 (57%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++FSQ T+ML+++E+ L QY R+DG++ R +A+ FN E V L+S +AG
Sbjct: 606 LLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAG 665
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VI+ D WNP + QA RAHR+GQ + V + R ++VE+RI+++
Sbjct: 666 GLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAK 725
Query: 940 DKRKMVASAFGEDQGGGTA--SRLTVED-LRY 968
K + GG T S+ +ED LR+
Sbjct: 726 HKMMLTHLVVRPGMGGMTTNFSKDELEDILRF 757
Score = 115 (45.5 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
K+L +L MLRR K + ++PPK+ + +V+ S + FYK + + K FK
Sbjct: 480 KRLHEILEPHMLRRLKADVLK-----SMPPKSEFIVRVELSSMQKKFYKHILT---KNFK 531
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISG--EMAKRLPRDMLID 674
A G ++L +++ LR+ C+HP L ++ SG EM+ +D
Sbjct: 532 ALNQKG--GGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLD 589
Query: 675 LLSRL 679
LLS++
Sbjct: 590 LLSKM 594
Score = 54 (24.1 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 300 ILADDQGLGKTISIIALI 317
ILAD+ GLGKTI + +
Sbjct: 289 ILADEMGLGKTIQTVVFL 306
Score = 54 (24.1 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDV 435
L+ P S L W RELE P+ L + Y GG +T V + K+++
Sbjct: 320 LISVPLSTLTNWERELELWAPE---LYCVTYVGG-KTARAV-IRKHEI 362
Score = 46 (21.3 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 27/113 (23%), Positives = 48/113 (42%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSLHGYKKLQAVLRAI 566
L + W +V+DEA +++++++ R L R K+ ++ L L+ + +
Sbjct: 398 LGCIDWAALVVDEAHRLRSNQSKFFRI---LSKYRIGYKLLLTGTPLQN--NLEELFHLL 452
Query: 567 MLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWA--FYKKLESDSLKKFKA 617
+ G F D Q T D SKEE ++ LE L++ KA
Sbjct: 453 NFL-SSGKFNDLQ--------TFQAEFTDVSKEEQVKRLHEILEPHMLRRLKA 496
Score = 44 (20.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 686 CCVCSDPPEDSVVTMCGHVFCYQCAS---EYITGDDNMCPAPRC 726
C VCSD + C V+ C S + I D +CP RC
Sbjct: 38 CKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICP--RC 79
Score = 38 (18.4 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 798 DLAGSNGSSAVHSKSPIEGPIKSIVFSQW 826
DL + +V+ ++ + P+KSI W
Sbjct: 46 DLLCCDSCPSVYHRTCLSPPLKSIPKGDW 74
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 217 (81.4 bits), Expect = 6.4e-25, Sum P(5) = 6.4e-25
Identities = 60/159 (37%), Positives = 84/159 (52%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+ D + V L+
Sbjct: 723 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 782
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ + V V RL R++ E
Sbjct: 783 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREM 842
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA--SRLTVEDL 966
DR LKL DK + + + E GG S+ +EDL
Sbjct: 843 FDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDL 881
Score = 113 (44.8 bits), Expect = 6.4e-25, Sum P(5) = 6.4e-25
Identities = 29/93 (31%), Positives = 52/93 (55%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + L PK ++ +V+ + + +Y+ + L+K
Sbjct: 594 QKLQAILKPMMLRRLKE---DVEK--KLAPKEETIIEVELTNIQKKYYRAI----LEKNF 644
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVK 649
+F G N N++ ++ LR+ C+HP L+K
Sbjct: 645 SFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIK 677
Score = 64 (27.6 bits), Expect = 6.4e-25, Sum P(5) = 6.4e-25
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q L W+L +C ILAD+ GLGKTI I +
Sbjct: 386 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 425
Score = 63 (27.2 bits), Expect = 6.4e-25, Sum P(5) = 6.4e-25
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKN 525
GCG L + W V++DEA +KN
Sbjct: 508 GCGELNAIEWRCVIIDEAHRLKN 530
Score = 54 (24.1 bits), Expect = 6.4e-25, Sum P(5) = 6.4e-25
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
L++ P S + W RE ++V++YHG ++ ++
Sbjct: 438 LIIAPLSTIANWEREFRTWTD----INVVVYHGSLISRQMIQ 475
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 220 (82.5 bits), Expect = 7.1e-25, Sum P(5) = 7.1e-25
Identities = 61/160 (38%), Positives = 85/160 (53%)
Query: 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDREITVM 872
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F D + V
Sbjct: 718 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVF 777
Query: 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE- 931
L+ +AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 778 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 837
Query: 932 ---DRI-LKLQDDKRKMV-ASAFGEDQGGGTASRLTVEDL 966
D+ LKL DK + + G G S++ VEDL
Sbjct: 838 EMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 877
Score = 118 (46.6 bits), Expect = 7.1e-25, Sum P(5) = 7.1e-25
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
KKLQ++L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 591 KKLQSILKPMMLRRLKD---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 641
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G N N++ ++ LR+ C+HP L+
Sbjct: 642 SFLSKGANQHNMPNLINTMMELRKCCNHPYLI 673
Score = 63 (27.2 bits), Expect = 7.1e-25, Sum P(5) = 7.1e-25
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 380 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 422
Score = 58 (25.5 bits), Expect = 7.1e-25, Sum P(5) = 7.1e-25
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L K+ W VV+DEA +KN ++
Sbjct: 506 CPELKKIQWRCVVIDEAHRLKNRNCKL 532
Score = 55 (24.4 bits), Expect = 7.1e-25, Sum P(5) = 7.1e-25
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
L++ P S + W RE ++ ++YHG ++ ++ +
Sbjct: 435 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIF 490
Query: 432 KYDVVLTTYSIVTNEVPK 449
K+ VV+TT+ ++ + P+
Sbjct: 491 KFQVVITTFEMILADCPE 508
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 219 (82.2 bits), Expect = 7.2e-25, Sum P(5) = 7.2e-25
Identities = 50/125 (40%), Positives = 74/125 (59%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAG 879
++F Q T++++++E+ L ++Y RLDG+ R +K FN D E L+S +AG
Sbjct: 876 LMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSEYFCFLLSTRAG 935
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LGLN+ A VI+ D WNP + QA DRAHRIGQ V + RL ++VE++IL+
Sbjct: 936 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSNSVEEKILERAQ 995
Query: 940 DKRKM 944
K M
Sbjct: 996 FKLDM 1000
Score = 101 (40.6 bits), Expect = 7.2e-25, Sum P(5) = 7.2e-25
Identities = 32/94 (34%), Positives = 45/94 (47%)
Query: 224 FGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIAL 283
F D SGS +E G ++ Y A + + E P L+ L ++Q L
Sbjct: 490 FDDDDDEDIASGSDEEGE--GRRKIDYYAVAHRIKEEITEQ--PSILVGGTLKEYQMKGL 545
Query: 284 AWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
WM+ +L+ GILAD+ GLGKTI I+LI
Sbjct: 546 QWMISLYNNNLN---GILADEMGLGKTIQTISLI 576
Score = 77 (32.2 bits), Expect = 7.2e-25, Sum P(5) = 7.2e-25
Identities = 29/100 (29%), Positives = 49/100 (49%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K D + +LP K + K FS + K+L + + K
Sbjct: 751 RRLHKVLRPFLLRRLKK---DVEK--DLPDKQERVIKCRFSALQAKLNKQLATHN-KMVV 804
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSV 656
+ G V + ML++LR+ C+HP + ++ + D V
Sbjct: 805 SDGKGGKVGMR--GLSNMLMQLRKLCNHPFVFEQVE-DQV 841
Score = 70 (29.7 bits), Expect = 7.2e-25, Sum P(5) = 7.2e-25
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG--GSRTKDP--VELAKYDVVLTTYSIV 443
LV+ P S L W E E P ++S ++Y G +R + + + V+LTTY +
Sbjct: 590 LVIVPLSTLTNWNLEFEKWAP---SVSRIVYKGPPNARKQQQQNIRWGNFQVLLTTYEYI 646
Query: 444 TNEVP 448
+ P
Sbjct: 647 IKDRP 651
Score = 50 (22.7 bits), Expect = 7.2e-25, Sum P(5) = 7.2e-25
Identities = 7/25 (28%), Positives = 18/25 (72%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVA 531
L+K+ W +++DE +KN +++++
Sbjct: 653 LSKIKWTHMIVDEGHRMKNTQSKLS 677
Score = 37 (18.1 bits), Expect = 1.9e-18, Sum P(5) = 1.9e-18
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 299 GILADDQGLGKTISIIALIQMQRSLQSK 326
G+ DD K ++++ +Q Q++ Q +
Sbjct: 41 GVRQDDPEYLKAHNLLSAVQRQQAFQKQ 68
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 222 (83.2 bits), Expect = 9.2e-25, Sum P(5) = 9.2e-25
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 350 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 409
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 410 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 469
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 470 AKYKLNVDQKVIQAGMF--DQKSSSHER 495
Score = 83 (34.3 bits), Expect = 9.2e-25, Sum P(5) = 9.2e-25
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 273 VN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 2 VNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 45
Score = 71 (30.1 bits), Expect = 9.2e-25, Sum P(5) = 9.2e-25
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 218 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 272
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 273 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 308
Score = 69 (29.3 bits), Expect = 9.2e-25, Sum P(5) = 9.2e-25
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 59 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 118
Score = 57 (25.1 bits), Expect = 9.2e-25, Sum P(5) = 9.2e-25
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 122 LAKIRWKYMIVDEGHRMKNHHCKLTQ 147
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 222 (83.2 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 431 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 490
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 491 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 550
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 551 AKYKLNVDQKVIQAGMF--DQKSSSHER 576
Score = 86 (35.3 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 81 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 126
Score = 71 (30.1 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 299 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 353
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 354 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 389
Score = 69 (29.3 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 140 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 199
Score = 57 (25.1 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 203 LAKIRWKYMIVDEGHRMKNHHCKLTQ 228
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 278 (102.9 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 62/158 (39%), Positives = 92/158 (58%)
Query: 810 SKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREI 869
SK EG K ++F+Q+ +MLD++E LN + RLDG+ + R + V FN D+ I
Sbjct: 1778 SKCKREGN-KCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSI 1836
Query: 870 TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929
+ + S ++G++G+N+ AA+ VI D WNP+ + QA+DR HRIGQT+ V V R T
Sbjct: 1837 FIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYT 1896
Query: 930 VEDRILKLQDDKRKM--VASAFGEDQGGGTASRLTVED 965
VE+ I K Q KRK+ + G T S++T D
Sbjct: 1897 VEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTD 1934
Score = 78 (32.5 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+L +++ GILAD+ GLGKT+ I+L+
Sbjct: 657 IIKATLRDYQHAGLHWLLYLYKNNIN---GILADEMGLGKTLQCISLL 701
Score = 69 (29.3 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 25/113 (22%), Positives = 54/113 (47%)
Query: 544 IKIPISRNSLHGYK----KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKE 599
+ + I ++ +H K +L V+R +LRR K ++ + +P K + K ++
Sbjct: 855 LNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKN-VEKE----MPNKYEHIIKCKLTRR 909
Query: 600 EWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDH-PLLVKEY 651
+ Y + ++ K + + G NY ++ +L++LR+ C+H L +Y
Sbjct: 910 QQILYDEFINN--KNVQNTLNTG----NYIGLMNILIQLRKVCNHCDLFTNKY 956
Score = 55 (24.4 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVELAKYD---VVLTTYSI 442
LV+ P S+L W EL+ P +L Y+G R K V D + +++YS
Sbjct: 715 LVIVPTSILINWEIELKRFCP---CFKILSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 443 VTNE 446
V +
Sbjct: 772 VVKD 775
Score = 54 (24.1 bits), Expect = 3.6e-23, Sum P(5) = 3.6e-23
Identities = 33/133 (24%), Positives = 59/133 (44%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGYKKLQAVLRAIMLR 569
W ++LDEA IKN T+ SL+ + P+ +NSL ++L ++L +M
Sbjct: 784 WKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPL-QNSL---EELWSLLHFLM-P 838
Query: 570 RTKGTFIDGQPIINLPPK-TISLTKVDFSKEEW-AFYKKLESDSLKKFKAFADAGTVNQN 627
+ +D + + P I +K+ SKE + + L++ K + N+
Sbjct: 839 NIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNVEKEMPNK- 897
Query: 628 YANILLMLLRLRQ 640
Y +I+ L RQ
Sbjct: 898 YEHIIKCKLTRRQ 910
Score = 47 (21.6 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 13/61 (21%), Positives = 32/61 (52%)
Query: 81 LQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPR------IANVASADYEKISSQ 134
L +L + + ++N ++++ +GN N+ + N R ++N+ S++ K++S
Sbjct: 1281 LSILKLLNQSNPLNNDNNNNNNNNNGNNNIYNMNRYNSRNSRNSSLSNIFSSNTSKMNSF 1340
Query: 135 Q 135
Q
Sbjct: 1341 Q 1341
Score = 45 (20.9 bits), Expect = 9.0e-19, Sum P(2) = 9.0e-19
Identities = 18/87 (20%), Positives = 38/87 (43%)
Query: 149 SLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRD-YYVKKNDDDIMMYEGNR 207
SL+ S+ MNS Q+ + N++ +N ++ ++V N +D+ Y N
Sbjct: 1325 SLSNIFSSNTSKMNSFQLDFLYTNSF-------INQDALCKNSFFVNINIEDVHSYIYNS 1377
Query: 208 I----LPSSLMHGKSVSMTQFGGPSDL 230
I +P +++ +T+ D+
Sbjct: 1378 IYKEYIPKNILSFSDEFLTELNNNYDI 1404
Score = 41 (19.5 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 131 ISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSS 164
I + L+RT A +P S N S++ N N++
Sbjct: 560 IKDEYNLRRTKIAKSKPSSDNNNSENDNNNDNNN 593
Score = 38 (18.4 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 511 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI 546
G+ +V+ E + K H ++ +C + R +KI
Sbjct: 88 GFQDLVMYEVKKKKKHFKVLSHSCLKYLSNREKMKI 123
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 278 (102.9 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 62/158 (39%), Positives = 92/158 (58%)
Query: 810 SKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREI 869
SK EG K ++F+Q+ +MLD++E LN + RLDG+ + R + V FN D+ I
Sbjct: 1778 SKCKREGN-KCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSI 1836
Query: 870 TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929
+ + S ++G++G+N+ AA+ VI D WNP+ + QA+DR HRIGQT+ V V R T
Sbjct: 1837 FIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYT 1896
Query: 930 VEDRILKLQDDKRKM--VASAFGEDQGGGTASRLTVED 965
VE+ I K Q KRK+ + G T S++T D
Sbjct: 1897 VEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTD 1934
Score = 78 (32.5 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+L +++ GILAD+ GLGKT+ I+L+
Sbjct: 657 IIKATLRDYQHAGLHWLLYLYKNNIN---GILADEMGLGKTLQCISLL 701
Score = 69 (29.3 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 25/113 (22%), Positives = 54/113 (47%)
Query: 544 IKIPISRNSLHGYK----KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKE 599
+ + I ++ +H K +L V+R +LRR K ++ + +P K + K ++
Sbjct: 855 LNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKN-VEKE----MPNKYEHIIKCKLTRR 909
Query: 600 EWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDH-PLLVKEY 651
+ Y + ++ K + + G NY ++ +L++LR+ C+H L +Y
Sbjct: 910 QQILYDEFINN--KNVQNTLNTG----NYIGLMNILIQLRKVCNHCDLFTNKY 956
Score = 55 (24.4 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVELAKYD---VVLTTYSI 442
LV+ P S+L W EL+ P +L Y+G R K V D + +++YS
Sbjct: 715 LVIVPTSILINWEIELKRFCP---CFKILSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 443 VTNE 446
V +
Sbjct: 772 VVKD 775
Score = 54 (24.1 bits), Expect = 3.6e-23, Sum P(5) = 3.6e-23
Identities = 33/133 (24%), Positives = 59/133 (44%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGYKKLQAVLRAIMLR 569
W ++LDEA IKN T+ SL+ + P+ +NSL ++L ++L +M
Sbjct: 784 WKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPL-QNSL---EELWSLLHFLM-P 838
Query: 570 RTKGTFIDGQPIINLPPK-TISLTKVDFSKEEW-AFYKKLESDSLKKFKAFADAGTVNQN 627
+ +D + + P I +K+ SKE + + L++ K + N+
Sbjct: 839 NIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNVEKEMPNK- 897
Query: 628 YANILLMLLRLRQ 640
Y +I+ L RQ
Sbjct: 898 YEHIIKCKLTRRQ 910
Score = 47 (21.6 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 13/61 (21%), Positives = 32/61 (52%)
Query: 81 LQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPR------IANVASADYEKISSQ 134
L +L + + ++N ++++ +GN N+ + N R ++N+ S++ K++S
Sbjct: 1281 LSILKLLNQSNPLNNDNNNNNNNNNGNNNIYNMNRYNSRNSRNSSLSNIFSSNTSKMNSF 1340
Query: 135 Q 135
Q
Sbjct: 1341 Q 1341
Score = 45 (20.9 bits), Expect = 9.0e-19, Sum P(2) = 9.0e-19
Identities = 18/87 (20%), Positives = 38/87 (43%)
Query: 149 SLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRD-YYVKKNDDDIMMYEGNR 207
SL+ S+ MNS Q+ + N++ +N ++ ++V N +D+ Y N
Sbjct: 1325 SLSNIFSSNTSKMNSFQLDFLYTNSF-------INQDALCKNSFFVNINIEDVHSYIYNS 1377
Query: 208 I----LPSSLMHGKSVSMTQFGGPSDL 230
I +P +++ +T+ D+
Sbjct: 1378 IYKEYIPKNILSFSDEFLTELNNNYDI 1404
Score = 41 (19.5 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 131 ISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSS 164
I + L+RT A +P S N S++ N N++
Sbjct: 560 IKDEYNLRRTKIAKSKPSSDNNNSENDNNNDNNN 593
Score = 38 (18.4 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 511 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI 546
G+ +V+ E + K H ++ +C + R +KI
Sbjct: 88 GFQDLVMYEVKKKKKHFKVLSHSCLKYLSNREKMKI 123
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 262 (97.3 bits), Expect = 1.3e-24, Sum P(4) = 1.3e-24
Identities = 55/134 (41%), Positives = 84/134 (62%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FS T++LD++E+ ++Y RLDG R + VK+FN+ R++ + L+S A
Sbjct: 460 KVLLFSLSTKLLDVLESYCMAEGLEYHRLDGNTKSKDRVKIVKEFNSSRDVNLCLVSTLA 519
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LGLN + A+ V+L D WNP + QA+DR +RIGQ R VTV RL TVE+ I Q
Sbjct: 520 GGLGLNFIGANVVVLFDPTWNPANDLQAIDRVYRIGQCRDVTVFRLISLGTVEEIIYLRQ 579
Query: 939 DDKRKMVASAFGED 952
K+++ +S G++
Sbjct: 580 VYKQQLQSSVIGQE 593
Score = 78 (32.5 bits), Expect = 1.3e-24, Sum P(4) = 1.3e-24
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAK-RSTIKIPISRNSL 553
+ W V++DEA IKNH++++ +A +R K R + I +N+L
Sbjct: 197 INWAAVIVDEAHKIKNHKSKITQAVKQMRCKVRIGLTGTILQNNL 241
Score = 68 (29.0 bits), Expect = 1.3e-24, Sum P(4) = 1.3e-24
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q+ + ++ Q +S C IL DD GLGKT+ +I +
Sbjct: 60 LRDYQREGIKFIYQNYAKSRGC---ILGDDMGLGKTVQVIGFL 99
Score = 59 (25.8 bits), Expect = 1.3e-24, Sum P(4) = 1.3e-24
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PVELAKYDVVLTTY 440
++V P SVL W EL+ V++ HG + ++ V+ + ++ LTTY
Sbjct: 134 VIVAPLSVLYNWKDELDTW----GHFRVVVVHGVRKDEELARVQRGRCEIALTTY 184
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 265 (98.3 bits), Expect = 1.5e-24, Sum P(5) = 1.5e-24
Identities = 58/134 (43%), Positives = 85/134 (63%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+++ Q TRM+DL+E L +Y RLDG+ + R V ++ T E+ V L+S +AG
Sbjct: 1449 LIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPELFVFLLSTRAGG 1508
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---KL 937
LG+N+ AA VI D WNP+ + QA+DRAHRIGQ + VTV R R T+E+RI+ K
Sbjct: 1509 LGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERIVIRAKE 1568
Query: 938 QDDKRKMVASAFGE 951
+++ +K+V S GE
Sbjct: 1569 KEEVQKVVISG-GE 1581
Score = 69 (29.3 bits), Expect = 1.5e-24, Sum P(5) = 1.5e-24
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+L L ++Q L W+ + ++ GILAD+ GLGKT+ I+++
Sbjct: 837 MLMCKLKEYQLKGLNWLANLYEQGIN---GILADEMGLGKTVQSISVM 881
Score = 69 (29.3 bits), Expect = 1.5e-24, Sum P(5) = 1.5e-24
Identities = 25/100 (25%), Positives = 46/100 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESD-SLKKF 615
K+L +L+ MLRR K + + L K D ++ + Y+ L S+ +
Sbjct: 1058 KRLHMILKPFMLRRVKKN-VQSE----LGEKIEKEVYCDLTQRQKILYQALRRQISIAEL 1112
Query: 616 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS 655
A G + A+I+ ++++ R+ C+HP L + D S
Sbjct: 1113 LEKAILGG-DDTVASIMNLVMQFRKVCNHPDLFEREDVRS 1151
Score = 61 (26.5 bits), Expect = 1.5e-24, Sum P(5) = 1.5e-24
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY 433
LV+ PAS L W +E+ VP L + Y G TKD L K+
Sbjct: 895 LVIAPASTLHNWQQEITRFVPK---LKCIPYWGS--TKDRKILRKF 935
Score = 50 (22.7 bits), Expect = 1.5e-24, Sum P(5) = 1.5e-24
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLRAIM 567
V W ++LDEAQ IK+ + ++ + + + + PI +N++ ++L A+L IM
Sbjct: 969 VKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPI-QNTM---QELWALLHFIM 1024
Score = 37 (18.1 bits), Expect = 2.4e-21, Sum P(5) = 2.4e-21
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 609 SDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS 655
S SLK+ + ++Y+N+ MLL + +L ++ DS
Sbjct: 1268 SSSLKEEQLCRQEFCYGKDYSNVRKMLLLPKSITKVDVLGSDFKEDS 1314
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 229 (85.7 bits), Expect = 1.7e-24, Sum P(5) = 1.7e-24
Identities = 46/118 (38%), Positives = 73/118 (61%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ +MLD++E L Y ++DGT ++ +R + +N D I V L++ + G
Sbjct: 854 LLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGG 913
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
+G+N+ A+ VI+ D WNP+T+ QA +RA RIGQ + VTV RL T+E++I Q
Sbjct: 914 IGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQ 971
Score = 105 (42.0 bits), Expect = 1.7e-24, Sum P(5) = 1.7e-24
Identities = 39/132 (29%), Positives = 60/132 (45%)
Query: 193 VKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDL-AYRSGSADERAVGGDERLIYQ 251
V++N+DD G + G+ V + G D R ++ + E+ +
Sbjct: 420 VQENEDDFSPSSGEEAEAACGGRGRKVVRCRDDGDEDYYKQRLRKWNKLRLQDKEKCL-- 477
Query: 252 AALEDLNQPKVEATLPD----GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQ 305
LED + + +A D G L L K+Q+ + W+ + LHC GGIL D+
Sbjct: 478 -KLED-DSEESDAEFDDFKMPGFLFRKLFKYQQTGVRWLWE-----LHCQQAGGILGDEM 530
Query: 306 GLGKTISIIALI 317
GLGKTI IIA +
Sbjct: 531 GLGKTIQIIAFL 542
Score = 73 (30.8 bits), Expect = 1.7e-24, Sum P(5) = 1.7e-24
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
T++VCP +V+ QW +E P +++ GS T+ +L + + +++T+YS
Sbjct: 565 TIIVCPTTVMHQWVKEFHTWWPPFRV--AILHETGSYTQKKEKLIRDIAHCHGILITSYS 622
Query: 442 IV 443
+
Sbjct: 623 YI 624
Score = 57 (25.1 bits), Expect = 1.7e-24, Sum P(5) = 1.7e-24
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI 544
+++ W V+LDE I+N V AC R I
Sbjct: 631 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRII 668
Score = 50 (22.7 bits), Expect = 1.7e-24, Sum P(5) = 1.7e-24
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 589 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 645
+SL+ D K E + +L + K ++ F D+ V + I L+ LR+ C+HP
Sbjct: 748 MSLSLPD--KNEQVLFCRLTEEQHKVYQNFIDSKEVYRILNGDMQIFSGLVALRKICNHP 805
Score = 40 (19.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 733 DVVFSKTTLKNCVSD 747
D + SKT CVSD
Sbjct: 16 DCLLSKTEQSQCVSD 30
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 271 (100.5 bits), Expect = 2.2e-24, Sum P(5) = 2.2e-24
Identities = 58/143 (40%), Positives = 87/143 (60%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ T MLD++ + ++ RLDG+MS R+ + FN D E+ + L+S +A
Sbjct: 617 KVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFNNDPEVFLFLVSTRA 676
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ AA VI+ D WNP ++ QA DR HRIGQT+PV V RL +T++ +I++
Sbjct: 677 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 736
Query: 939 DDKRKMVASAFGEDQGGGTASRL 961
KRK+ ++Q G S L
Sbjct: 737 AAKRKLEKLIIHKNQFKGGKSGL 759
Score = 69 (29.3 bits), Expect = 2.2e-24, Sum P(5) = 2.2e-24
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 297 LGGILADDQGLGKTISIIALIQM 319
+ GILAD+ GLGKTI IA I +
Sbjct: 241 INGILADEMGLGKTIQCIATIAL 263
Score = 67 (28.6 bits), Expect = 2.2e-24, Sum P(5) = 2.2e-24
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 624 VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVG---KISGEMAKRLPRDMLID-LLSRL 679
VN NI+++L R+ C+HP L+ EY D K+ ++ K + +L+D +L L
Sbjct: 556 VNLKLQNIMMLL---RKCCNHPYLI-EYPLDPATQQFKVDEDLVKNSGKFLLLDRMLPEL 611
Query: 680 E 680
+
Sbjct: 612 K 612
Score = 46 (21.3 bits), Expect = 2.2e-24, Sum P(5) = 2.2e-24
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 550 RNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609
+N LH L +L +LRR K + +PPK + +K++ FY + +
Sbjct: 433 QNILH---MLHQILTPFLLRRLKSDVA-----LEVPPKREVVVYAPLAKKQETFYTAIVN 484
Query: 610 DSLK 613
+++
Sbjct: 485 RTIR 488
Score = 39 (18.8 bits), Expect = 2.2e-24, Sum P(5) = 2.2e-24
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 512 WFRVVLDEAQTIKNHRTQVAR 532
W +++DE IKN ++ R
Sbjct: 347 WKYLIVDEGHRIKNMNCRLIR 367
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 233 (87.1 bits), Expect = 2.4e-24, Sum P(5) = 2.4e-24
Identities = 47/118 (39%), Positives = 73/118 (61%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ +ML ++E L H Y ++DGT ++ +R + +N D I V L++ + G
Sbjct: 853 LLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLTTRVGG 912
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
LG+N+ A+ VI+ D WNP+T+ QA +RA RIGQ + VTV RL T+E++I Q
Sbjct: 913 LGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQ 970
Score = 99 (39.9 bits), Expect = 2.4e-24, Sum P(5) = 2.4e-24
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQGLGKTISIIALI 317
G L L K+Q+ + W+ + LHC GGIL D+ GLGKTI IIA +
Sbjct: 495 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFL 540
Score = 67 (28.6 bits), Expect = 2.4e-24, Sum P(5) = 2.4e-24
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
TL+VCP +V+ QW +E P +++ GS L + + V++T+YS
Sbjct: 563 TLIVCPTTVMHQWVKEFHTWWPPFRV--AILHETGSCAHRKERLVRDIVHCHGVLITSYS 620
Query: 442 IV 443
+
Sbjct: 621 YI 622
Score = 57 (25.1 bits), Expect = 2.4e-24, Sum P(5) = 2.4e-24
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI 544
+++ W V+LDE I+N V AC R I
Sbjct: 629 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRII 666
Score = 56 (24.8 bits), Expect = 2.4e-24, Sum P(5) = 2.4e-24
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 589 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ--NYAN-ILLMLLRLRQACDHP 645
+SL+ D K E + +L + K ++ F D+ V + N N I L+ LR+ C+HP
Sbjct: 746 MSLSLPD--KNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNGENQIFSGLVALRKICNHP 803
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 232 (86.7 bits), Expect = 2.6e-24, Sum P(5) = 2.6e-24
Identities = 58/153 (37%), Positives = 83/153 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++FSQ TR+LD++E+ L QY R+DG RD +++ +N E V L+S +AG
Sbjct: 515 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VIL D WNP + QA DRAHRIGQ + V V R + +E ++++
Sbjct: 575 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAY 634
Query: 940 DKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972
K + A Q G A + TV L MV
Sbjct: 635 KKLALDALVI---QQGRLAEQKTVNKDELLQMV 664
Score = 95 (38.5 bits), Expect = 2.6e-24, Sum P(5) = 2.6e-24
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K G LPPK ++ KV S+ + +YK L L+K
Sbjct: 396 QQLHKVLRPFLLRRLKSDVEKG-----LPPKKETILKVGMSQMQKQYYKAL----LQKDL 446
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
+ G + NI + +LR+ C+HP L
Sbjct: 447 EVVNGGGERKRLLNIAM---QLRKCCNHPYL 474
Score = 72 (30.4 bits), Expect = 2.6e-24, Sum P(5) = 2.6e-24
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W+++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 194 LRDYQLAGLNWLIRLYENGIN---GILADEMGLGKTLQTISLL 233
Score = 52 (23.4 bits), Expect = 2.6e-24, Sum P(5) = 2.6e-24
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR-TKDPVELA-KYDVVLTTYSIVTN 445
+VV P S L W E+ P A+ L R ++ + +A K+D+ +T++ +
Sbjct: 247 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIK 306
Query: 446 E 446
E
Sbjct: 307 E 307
Score = 52 (23.4 bits), Expect = 2.6e-24, Sum P(5) = 2.6e-24
Identities = 16/65 (24%), Positives = 36/65 (55%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPIS----RNSLHGYKKLQAV 562
L + W +++DEA IKN + +++ ++R + ++ I+ +N+LH +L A+
Sbjct: 311 LRRFSWRYIIIDEAHRIKNENSLLSK---TMRLFSTNYRLLITGTPLQNNLH---ELWAL 364
Query: 563 LRAIM 567
L ++
Sbjct: 365 LNFLL 369
Score = 50 (22.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 783 TQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLN 838
T+ E + +C E + GS G+ + + I+G ++ + ++ L EN +N
Sbjct: 159 TEEEEDEECLKEEEGGIVGSGGTRLLTQPACIQGKLRDYQLAGLNWLIRLYENGIN 214
Score = 40 (19.1 bits), Expect = 6.2e-20, Sum P(4) = 6.2e-20
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 447 VPKQPSVDEEEADEKNGE 464
VP + +E+E DE+ E
Sbjct: 63 VPVEDDAEEDEEDEEKAE 80
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 213 (80.0 bits), Expect = 2.8e-24, Sum P(5) = 2.8e-24
Identities = 57/159 (35%), Positives = 86/159 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 491 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLL 550
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V + RL R++ E
Sbjct: 551 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREM 610
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA--SRLTVEDL 966
D+ LKL DK + + + E+ G S+ +EDL
Sbjct: 611 FDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 649
Score = 118 (46.6 bits), Expect = 2.8e-24, Sum P(5) = 2.8e-24
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 362 QKLQAILKPMMLRRLKE---DVEK--NLAPKEETIIEVELTNIQKKYYRAI----LEKNF 412
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
AF G N N+L ++ LR+ C+HP L+
Sbjct: 413 AFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 444
Score = 63 (27.2 bits), Expect = 2.8e-24, Sum P(5) = 2.8e-24
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L + +C ILAD+ GLGKTI I +
Sbjct: 154 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 193
Score = 63 (27.2 bits), Expect = 2.8e-24, Sum P(5) = 2.8e-24
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 206 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 244
Score = 53 (23.7 bits), Expect = 2.8e-24, Sum P(5) = 2.8e-24
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L + W VV+DEA +KN ++
Sbjct: 277 CPELRNIPWRCVVIDEAHRLKNRNCKL 303
Score = 42 (19.8 bits), Expect = 7.9e-07, Sum P(5) = 7.9e-07
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 747 DDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTK 790
+D PT +PF D+ + + + + + +L L E N++
Sbjct: 1042 EDPEYKPTRTPFKDEIDVRTSSFSNYNAQILLHSLDKHSESNSE 1085
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 257 (95.5 bits), Expect = 3.0e-24, Sum P(4) = 3.0e-24
Identities = 69/219 (31%), Positives = 118/219 (53%)
Query: 755 DSPFADKSGILDNEYISSKIRTVLDI-LHTQC-ELNTKCSIVEIH-DLAGSNGS-SAVHS 810
D P ++G + EYI + + D LH C S ++H D +G A+
Sbjct: 899 DEPAYAENG--NKEYIKEDMSYMTDFELHKLCCNFPNTLSKYQLHNDEWMQSGKIDALKK 956
Query: 811 --KSPI-EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR 867
K+ I + K ++FS +T++LD++E L+ ++ RLDG+ + R + F D+
Sbjct: 957 LLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDK 1016
Query: 868 EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927
+I + ++S KAG G+N+V A++VI+ D +NP + QA DRAHR+GQT+ V +T L +
Sbjct: 1017 DIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITK 1076
Query: 928 DTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDL 966
D++E++I +L +K + S ED+ V D+
Sbjct: 1077 DSIEEKIHQLAKNKLAL-DSYISEDKKSQDVLESKVSDM 1114
Score = 88 (36.0 bits), Expect = 3.0e-24, Sum P(4) = 3.0e-24
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG----SRTKDPVE--LAKYDVVLTTYS 441
LVV P+S L W RE + P AL + Y+G +D +E KYDV++TTY+
Sbjct: 624 LVVVPSSTLENWLREFQKFAP---ALKIEPYYGSLQEREELRDILERNAGKYDVIVTTYN 680
Query: 442 I 442
+
Sbjct: 681 L 681
Score = 70 (29.7 bits), Expect = 3.0e-24, Sum P(4) = 3.0e-24
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 270 LLS--VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA 315
LLS ++L +Q+ + W+ + C ILADD GLGKT +I+
Sbjct: 565 LLSPEISLKDYQQTGINWLNLLYQNKMSC---ILADDMGLGKTCQVIS 609
Score = 46 (21.3 bits), Expect = 3.0e-24, Sum P(4) = 3.0e-24
Identities = 26/111 (23%), Positives = 52/111 (46%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKK-----LESDSL 612
+ + +++ +LRR K Q + +LPPK + + + + Y K LE +
Sbjct: 789 RAKTMMKPFILRRRKD-----QVLKHLPPKHTHIQYCELNAIQKKIYDKEIQIVLEHKRM 843
Query: 613 -KKFKAFADAGTVNQ-NYANILLMLLRLRQACDHPLLVKE-YDFDSVGKIS 660
K + DA ++ ++ +++ LR+A HPLL + Y+ + K+S
Sbjct: 844 IKDGELPKDAKEKSKLQSSSSKNLIMALRKASLHPLLFRNIYNDKIITKMS 894
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 225 (84.3 bits), Expect = 3.3e-24, Sum P(5) = 3.3e-24
Identities = 49/126 (38%), Positives = 74/126 (58%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ MLD+++ L +RLDG+M R +A+ +N L+S +AG
Sbjct: 731 LIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAG 790
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VI+ D WNP + QA+ RAHRIGQT+ V + RL + +VE+ I++
Sbjct: 791 GLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERA- 849
Query: 940 DKRKMV 945
KRK+V
Sbjct: 850 -KRKLV 854
Score = 112 (44.5 bits), Expect = 3.3e-24, Sum P(5) = 3.3e-24
Identities = 36/130 (27%), Positives = 68/130 (52%)
Query: 555 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKK 614
G L L +LRR K D + +LPPKT + +VD + + FYK + + + ++
Sbjct: 606 GISALHKKLEPFLLRRVKK---DVEK--SLPPKTEQILRVDMTAHQKQFYKWILTKNYRE 660
Query: 615 FKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF---DSVGKISGEMAKRLPRDM 671
G++N + N+++ L++ C+H L ++YD D+ G++ ++ K + +
Sbjct: 661 LSKGVK-GSIN-GFVNLVM---ELKKCCNHASLTRQYDHIYDDAQGRLQ-QLLKSSGKLI 714
Query: 672 LID-LLSRLE 680
L+D LL RL+
Sbjct: 715 LLDKLLCRLK 724
Score = 68 (29.0 bits), Expect = 3.3e-24, Sum P(5) = 3.3e-24
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
LVV P S + W +E P+ +++++Y G ++D + + K + +L
Sbjct: 458 LVVVPLSTMAAWQKEFAQWAPE---MNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAIL 514
Query: 438 TTYSIVTNEVPKQPSVD-----EEEADE-KNGET--YGLSSEFSVNKK 477
TTY I+ + S+D +EA KN E+ Y ++F N K
Sbjct: 515 TTYEILLKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHK 562
Score = 67 (28.6 bits), Expect = 3.3e-24, Sum P(5) = 3.3e-24
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 268 DGLLSVNLLKHQKIALAWMLQKETRSLHCLGG--ILADDQGLGKTISIIALI 317
DG + L +Q L WM+ C G ILAD+ GLGKTI I+L+
Sbjct: 398 DGESTHKLRDYQLEGLNWMVYA-----WCKGNSSILADEMGLGKTIQSISLL 444
Score = 59 (25.8 bits), Expect = 2.7e-23, Sum P(5) = 2.7e-23
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGYKKLQAVLR 564
L+ + W +++DEA +KN + + ++ R + P+ +NSL K+L A+L
Sbjct: 527 LSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPL-QNSL---KELWALLH 582
Query: 565 AIM 567
IM
Sbjct: 583 FIM 585
Score = 55 (24.4 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 262 VEATLP---DGLLSVNLLKHQKIALAWMLQKETRSL 294
VE +LP + +L V++ HQK W+L K R L
Sbjct: 626 VEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYREL 661
Score = 39 (18.8 bits), Expect = 3.3e-24, Sum P(5) = 3.3e-24
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIAN 122
+D + S+ Q+DDS S N + + P+ N
Sbjct: 45 ADSPESSSDQSDDSDDASENSSSSEPDEPAPKKKN 79
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 219 (82.2 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 52/135 (38%), Positives = 79/135 (58%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAG 879
++F Q T++++++E+ L+ +Y RLDG+ R + + FN E+ + L+S +AG
Sbjct: 756 LMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAG 815
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ A VI+ D WNP + QA DRAHRIGQT+ V + RL +VE+ IL
Sbjct: 816 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQ 875
Query: 936 -KLQDDKRKMVASAF 949
KL D + + A F
Sbjct: 876 YKLDIDGKVIQAGKF 890
Score = 104 (41.7 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 38/107 (35%), Positives = 50/107 (46%)
Query: 212 SLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLI-YQAALEDLNQPKVEATLPDGL 270
SL V +QFG + AY D R D+R I Y ++ + E P L
Sbjct: 359 SLAAAVKVQQSQFG---ESAYDE-DMDRRMNPEDDRKIDYYNVAHNIREVVTEQ--PSIL 412
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+ L ++Q L WM+ H L GILAD+ GLGKTI I+LI
Sbjct: 413 VGGKLKEYQLRGLQWMISLYNN--H-LNGILADEMGLGKTIQTISLI 456
Score = 70 (29.7 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD---P-VELAKYDVVLTTYSIV 443
LV+ P S L W E E P ++ ++Y G + + P V + + V+LTTY +
Sbjct: 470 LVIVPLSTLTNWTMEFERWAP---SIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYI 526
Query: 444 TNEVP 448
+ P
Sbjct: 527 IKDRP 531
Score = 63 (27.2 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 28/130 (21%), Positives = 60/130 (46%)
Query: 552 SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS 611
SL ++L VLR +LRR K ++ + LP K + + S + Y +++
Sbjct: 626 SLLVIRRLHKVLRPFLLRRLKKD-VEAE----LPDKVEKVIRCQMSGLQQKLYYQMKKHG 680
Query: 612 LKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE---------YDFDSVGKISG- 661
+ + DA + +++L++ C+HP + ++ +++D + ++SG
Sbjct: 681 MLYVE---DAKRGKTGIKGLQNTVMQLKKICNHPFVFEDVERSIDPTGFNYDMLWRVSGK 737
Query: 662 -EMAKR-LPR 669
E+ R LP+
Sbjct: 738 FELLDRILPK 747
Score = 50 (22.7 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 13/63 (20%), Positives = 30/63 (47%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI---PISRNSLHGYKKLQAVL 563
L+++ W +++DE +KN ++++ + + R + + P+ N + L VL
Sbjct: 533 LSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVL 592
Query: 564 RAI 566
I
Sbjct: 593 PRI 595
Score = 40 (19.1 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 395 VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVV 436
+LR+ +++E ++PDK + G + K ++ K+ ++
Sbjct: 641 LLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGML 682
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 281 (104.0 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 56/126 (44%), Positives = 83/126 (65%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K +VFSQ T MLD++ + + + RLDG+MS R++ + FNTD E+ + L+S +A
Sbjct: 273 KVLVFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYSEREKNIYSFNTDPEVFLFLVSTRA 332
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ AA VI+ D WNP ++ QA DR HRIGQT+PV V RL +T++ +I++
Sbjct: 333 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 392
Query: 939 DDKRKM 944
KRK+
Sbjct: 393 AAKRKL 398
Score = 70 (29.7 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 23/101 (22%), Positives = 53/101 (52%)
Query: 587 KTISLTKVD-FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL--MLLRLRQACD 643
K+I+ +++D F E +++ + +K+ + + ++ N+ L +++ LR+ C+
Sbjct: 170 KSINYSELDQFPSELEKLISQIQPE-VKRERTVVEGNIPIESEVNLKLQNIMMLLRKCCN 228
Query: 644 HPLLVKEYDFDSVG---KISGEMAKRLPRDMLID-LLSRLE 680
HP ++ EY D V KI E+ + +++D +L L+
Sbjct: 229 HPYMI-EYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELK 268
Score = 41 (19.5 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVAR 532
W +++DE IKN + ++ R
Sbjct: 4 WKYLIVDEGHRIKNMKCRLIR 24
>FB|FBgn0035689 [details] [associations]
symbol:CG7376 species:7227 "Drosophila melanogaster"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00176 PROSITE:PS50005 PROSITE:PS50089
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
Prosite:PS00518 GO:GO:0005524 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 EMBL:BT001896
ProteinModelPortal:Q8IG89 PaxDb:Q8IG89 PRIDE:Q8IG89
FlyBase:FBgn0035689 InParanoid:Q8IG89 OrthoDB:EOG470RZ4
ArrayExpress:Q8IG89 Bgee:Q8IG89 Uniprot:Q8IG89
Length = 1285
Score = 193 (73.0 bits), Expect = 3.6e-24, Sum P(6) = 3.6e-24
Identities = 47/120 (39%), Positives = 66/120 (55%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDREITVMLMSLK 877
K IVFSQW +L + +L+ + IQ+R ++ DF N +T +LM L
Sbjct: 1140 KIIVFSQWQAILIEIARALSLNGIQFRN-------KCTNKDFDDFKNPLSNVTCLLMPLS 1192
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
G+ GLN++ A+HV L++ NP E QA+ R HR GQ RP V R + TVE+ IL L
Sbjct: 1193 KGSKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFGQKRPTKVHRFIVNGTVEENILSL 1252
Score = 115 (45.5 bits), Expect = 3.6e-24, Sum P(6) = 3.6e-24
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT--KDPVELAKYDVVLTTYS 441
+ T++V P ++ QW E+ + +L VL+Y G T P +LA+YDVVLT Y+
Sbjct: 349 SGATIIVSPNAIKMQWFEEIHKHI--SPSLKVLLYFGLHSTFWVSPFDLAQYDVVLTDYT 406
Query: 442 IVTNEV 447
I+ NE+
Sbjct: 407 ILRNEI 412
Score = 79 (32.9 bits), Expect = 3.6e-24, Sum P(6) = 3.6e-24
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 268 DGLLSVNLLKHQKIALAWMLQKETRSLHCL-GGILADDQGLGKTISIIALIQMQRSLQSK 326
DG+ V KH+ + ++E + GGILAD+ GLGKT+ +A++ M Q
Sbjct: 207 DGITRV--FKHKYCLQFYPFEEEIPKISLPPGGILADEMGLGKTVEFLAMLLMNPRPQDS 264
Query: 327 SKTE 330
+ +
Sbjct: 265 YRND 268
Score = 63 (27.2 bits), Expect = 3.6e-24, Sum P(6) = 3.6e-24
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVA 531
PL V W+RV LDEAQ +++ + A
Sbjct: 436 PLLMVNWWRVCLDEAQMVESSTSAAA 461
Score = 54 (24.1 bits), Expect = 3.6e-24, Sum P(6) = 3.6e-24
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 676 LSRLETSSAI--CCVCSDPPEDSVVTM-CGHVFCYQCASEYI--TGDDNMCPAPRCKE 728
L L+ SA C +C + V M CGH C C G + P C++
Sbjct: 1040 LKHLKEDSADKPCPICQTQDDVRYVMMVCGHFVCQHCLDSMRRKNGRAGVTKCPLCRQ 1097
Score = 46 (21.3 bits), Expect = 3.6e-24, Sum P(6) = 3.6e-24
Identities = 18/79 (22%), Positives = 37/79 (46%)
Query: 582 INLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF--------AD----AGTVNQNYA 629
+ +PP+T + +++ S E +Y++ ++F A AD +++
Sbjct: 537 LGIPPQTEVVHRLELSNVESLYYREEHLKCHEQFLAAVAKHTRHNADNSSCLASISPQLL 596
Query: 630 NILLM-LLRLRQACDHPLL 647
I+L LR+RQ C P++
Sbjct: 597 RIILKPFLRIRQTCSVPVV 615
Score = 40 (19.1 bits), Expect = 2.6e-20, Sum P(6) = 2.6e-20
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 266 LPDGLLSVNLLKHQKIALAWMLQKE 290
LP S L K+Q+ ++WML +E
Sbjct: 167 LPKRFQS-QLRKYQQRTVSWMLGRE 190
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 276 (102.2 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 55/126 (43%), Positives = 83/126 (65%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K +VFSQ T MLD++ + + + RLDG+MS R++ + FNTD ++ + L+S +A
Sbjct: 600 KVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRA 659
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ AA VI+ D WNP ++ QA DR HRIGQT+PV V RL +T++ +I++
Sbjct: 660 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 719
Query: 939 DDKRKM 944
KRK+
Sbjct: 720 AAKRKL 725
Score = 68 (29.0 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 297 LGGILADDQGLGKTISIIALIQM 319
+ GILAD+ GLGKT+ IA I +
Sbjct: 225 INGILADEMGLGKTVQCIATIAL 247
Score = 65 (27.9 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 624 VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVG---KISGEMAKRLPRDMLID-LLSRL 679
VN NI+++L R+ C+HP ++ EY D V KI E+ + +++D +L L
Sbjct: 539 VNLKLRNIMMLL---RKCCNHPYMI-EYPIDPVTQEFKIDEELVTNSGKFLILDRMLPEL 594
Query: 680 E 680
+
Sbjct: 595 K 595
Score = 41 (19.5 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 512 WFRVVLDEAQTIKNHRTQVAR 532
W +++DE IKN + ++ R
Sbjct: 331 WKYLIVDEGHRIKNMKCRLIR 351
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 237 (88.5 bits), Expect = 4.1e-24, Sum P(4) = 4.1e-24
Identities = 51/131 (38%), Positives = 84/131 (64%)
Query: 815 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVML 873
EG + ++FSQ +R+LD++E+ +Y R+DG+ + R +A+ D+N D + V L
Sbjct: 517 EGS-RVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFL 575
Query: 874 MSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDR 933
++ +AG LG+N+ +A V+L D WNP + QA+DRAHRIGQ + V V RL ++VE++
Sbjct: 576 LTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEK 635
Query: 934 ILKLQDDKRKM 944
IL+ K ++
Sbjct: 636 ILERATQKLRL 646
Score = 86 (35.3 bits), Expect = 4.1e-24, Sum P(4) = 4.1e-24
Identities = 29/92 (31%), Positives = 48/92 (52%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKK-LESDSLKKF 615
K+L VL+ +LRR K D + + LP K ++L V S + +YKK LE D
Sbjct: 399 KQLHTVLQPFLLRRIKS---DVETSL-LPKKELNLY-VGMSSMQKKWYKKILEKD----L 449
Query: 616 KAFADAGTVNQNYANILLMLLRLRQACDHPLL 647
A + ++ +L ++++LR+ C+HP L
Sbjct: 450 DAVNGSNGSKESKTRLLNIMMQLRKCCNHPYL 481
Score = 76 (31.8 bits), Expect = 4.3e-23, Sum P(4) = 4.3e-23
Identities = 35/176 (19%), Positives = 80/176 (45%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGYKKLQAVL 563
PL K+ W +++DEA IKN + +++ ++ + P+ +N+LH +L A+L
Sbjct: 312 PLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPL-QNNLH---ELWALL 367
Query: 564 RAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGT 623
++ F D Q + + T+ D K + L+ L++ K+ +
Sbjct: 368 NFLL----PDIFSDAQDFDDW--FSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDVETSL 421
Query: 624 VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRL 679
+ + N+ + + +++ +L K D D+V +G + + L++++ +L
Sbjct: 422 LPKKELNLYVGMSSMQKKWYKKILEK--DLDAV---NGSNGSKESKTRLLNIMMQL 472
Score = 72 (30.4 bits), Expect = 4.1e-24, Sum P(4) = 4.1e-24
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYSI 442
LV+ P S L W RE+ PD ++ I G + + K +DVV+ +Y I
Sbjct: 249 LVIAPKSTLNNWLREINRWTPD---VNAFILQGDKEERAELIQKKLLGCDFDVVIASYEI 305
Query: 443 VTNEVPKQP 451
+ E K P
Sbjct: 306 IIRE--KSP 312
Score = 66 (28.3 bits), Expect = 4.1e-24, Sum P(4) = 4.1e-24
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 293 SLHC--LGGILADDQGLGKTISIIALIQMQRSLQ 324
SLH + GILAD+ GLGKT+ I+ + R ++
Sbjct: 209 SLHKNKIAGILADEMGLGKTLQTISFLGYLRYIE 242
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 229 (85.7 bits), Expect = 4.4e-24, Sum P(5) = 4.4e-24
Identities = 46/118 (38%), Positives = 73/118 (61%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ +MLD++E L Y ++DGT ++ +R + +N D I V L++ + G
Sbjct: 859 LLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGG 918
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
LG+N+ A+ V++ D WNP+T+ QA +RA RIGQ + VTV RL T+E++I Q
Sbjct: 919 LGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQ 976
Score = 99 (39.9 bits), Expect = 4.4e-24, Sum P(5) = 4.4e-24
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQGLGKTISIIALI 317
G L L K+Q+ + W+ + LHC GGIL D+ GLGKTI IIA +
Sbjct: 501 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFL 546
Score = 70 (29.7 bits), Expect = 4.4e-24, Sum P(5) = 4.4e-24
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
T++VCP +V+ QW +E P +++ GS T +L + + +++T+YS
Sbjct: 569 TVIVCPTTVMHQWVKEFHTWWPPFRV--AILHETGSYTHKKEKLIRDVAHCHGILITSYS 626
Query: 442 IV 443
+
Sbjct: 627 YI 628
Score = 59 (25.8 bits), Expect = 4.4e-24, Sum P(5) = 4.4e-24
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI 544
+++ W V+LDE I+N V AC R I
Sbjct: 635 ISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRII 672
Score = 53 (23.7 bits), Expect = 4.4e-24, Sum P(5) = 4.4e-24
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 589 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 645
+SL+ D K E + +L + K ++ F D+ V + I L+ LR+ C+HP
Sbjct: 752 MSLSLPD--KNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHP 809
Score = 37 (18.1 bits), Expect = 4.7e-15, Sum P(4) = 4.7e-15
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 455 EEEADEKNGETYGLSSEFS 473
EEE +E++ E G ++ S
Sbjct: 378 EEEEEEEDDEVEGAEADLS 396
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 223 (83.6 bits), Expect = 5.0e-24, Sum P(5) = 5.0e-24
Identities = 44/118 (37%), Positives = 71/118 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
+ F+Q +ML ++E L Y R+DGT ++ +R + +N D+ I + L++ + G
Sbjct: 855 LFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRYNEDKSIFIFLLTTRVGG 914
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
+G+N+ A VI+ D WNP+T+ QA +RA RIGQ + VTV RL T+E++I Q
Sbjct: 915 IGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQ 972
Score = 100 (40.3 bits), Expect = 5.0e-24, Sum P(5) = 5.0e-24
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 246 ERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILAD 303
ER + + ++ + E G L L K+Q+ + W+ + LHC GGIL D
Sbjct: 473 ERSVAEELSDESDTEFEEGFKVPGFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGD 527
Query: 304 DQGLGKTISIIALI 317
+ GLGKTI IIA +
Sbjct: 528 EMGLGKTIQIIAFL 541
Score = 81 (33.6 bits), Expect = 5.0e-24, Sum P(5) = 5.0e-24
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
T++VCPA+V+ QW +E P +++ GS T V+L + + +++T+YS
Sbjct: 564 TVIVCPATVMHQWVKEFHTWWPPFRV--AILHETGSYTNKKVKLIREIASCHGILITSYS 621
Query: 442 IV 443
+
Sbjct: 622 YI 623
Score = 56 (24.8 bits), Expect = 5.0e-24, Sum P(5) = 5.0e-24
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI 544
W V+LDE I+N V AC R I
Sbjct: 635 WHYVILDEGHKIRNPNAAVTLACKQFRTPHRII 667
Score = 50 (22.7 bits), Expect = 5.0e-24, Sum P(5) = 5.0e-24
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 589 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 645
+SL+ D K E + +L + + ++ F D+ V Q + L+ LR+ C+HP
Sbjct: 747 MSLSLPD--KNEQVLFCRLTDEQRQVYQNFIDSKEVYQILNGDMQVFSGLVALRKICNHP 804
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 222 (83.2 bits), Expect = 5.7e-24, Sum P(5) = 5.7e-24
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 897 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 956
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 957 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1016
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1017 AKYKLNVDQKVIQAGMF--DQKSSSHER 1042
Score = 86 (35.3 bits), Expect = 5.7e-24, Sum P(5) = 5.7e-24
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 547 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 592
Score = 71 (30.1 bits), Expect = 5.7e-24, Sum P(5) = 5.7e-24
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 765 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 819
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 820 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 855
Score = 69 (29.3 bits), Expect = 5.7e-24, Sum P(5) = 5.7e-24
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 606 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 665
Score = 57 (25.1 bits), Expect = 5.7e-24, Sum P(5) = 5.7e-24
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 669 LAKIRWKYMIVDEGHRMKNHHCKLTQ 694
Score = 56 (24.8 bits), Expect = 5.8e-21, Sum P(5) = 5.8e-21
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 252 AALEDLNQPKVEAT---LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
A L L+Q + T P GL V +L+ ++ L + + L L G LA D
Sbjct: 139 APLVPLHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTK 198
Query: 309 KTISIIAL--IQMQRSLQSK 326
TI + AL + QR L+ +
Sbjct: 199 ATIELKALRLLNFQRQLRQE 218
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 232 (86.7 bits), Expect = 5.8e-24, Sum P(6) = 5.8e-24
Identities = 50/148 (33%), Positives = 85/148 (57%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FSQ TR+LD++E+ L+ + RLDG+ + R + F++ I V L+S +
Sbjct: 1003 KVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKETIPVFLLSTNS 1062
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LG+N+ A+ VI DL +NP + QA DRAHR+GQ R V + +L +TV+ I +
Sbjct: 1063 GGLGINLTCANVVIFYDLSFNPQVDRQAEDRAHRLGQEREVIIYKLLAENTVDINIHESA 1122
Query: 939 DDKRKMVASAFGEDQGGGTASRLTVEDL 966
+ K+K+ + E ++L +++
Sbjct: 1123 NQKKKLNDNVLEEGTFNNAETKLQSKNI 1150
Score = 90 (36.7 bits), Expect = 5.8e-24, Sum P(6) = 5.8e-24
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV--ELAK------YDVVLTT 439
LVV PA++L W RE + P +LS++ Y+G R ++ + EL K ++V+LTT
Sbjct: 595 LVVVPATILANWEREFQTWCP---SLSIVRYYGNLREREELRYELKKKRPGKDFNVILTT 651
Query: 440 YSIV 443
Y+++
Sbjct: 652 YNLL 655
Score = 78 (32.5 bits), Expect = 5.8e-24, Sum P(6) = 5.8e-24
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 278 HQKIALAWM--LQKETRSLHCLGGILADDQGLGKTISIIALI 317
+Q I L WM L KE + GILAD+ GLGKT+ I+L+
Sbjct: 545 YQLIGLNWMAVLYKEK-----INGILADEMGLGKTVQTISLL 581
Score = 55 (24.4 bits), Expect = 5.8e-24, Sum P(6) = 5.8e-24
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 634 MLLRLRQACDHPLLVKE--YDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSD 691
+L++LR+A +HPLL K Y+ + + I +A + +D D + + + + SD
Sbjct: 898 ILMQLRKAANHPLLCKNIFYNDNQIQDIVNHLATK-DKDWS-DYRNDIPSLKELFDTYSD 955
Query: 692 PPEDSVVTMCGH 703
D T+C H
Sbjct: 956 --YDVFKTVCEH 965
Score = 45 (20.9 bits), Expect = 5.8e-24, Sum P(6) = 5.8e-24
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 505 GPLAKVGWFRVVLDEAQTIKN 525
G L + + ++LDEAQ IKN
Sbjct: 662 GFLKRFDYSFLILDEAQNIKN 682
Score = 45 (20.9 bits), Expect = 5.8e-24, Sum P(6) = 5.8e-24
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 455 EEEADEKNGETYGLSSEFSVNKKRK 479
E+E EK ++ SS S+ KKRK
Sbjct: 816 EKEEKEKEKQSLINSSNSSIKKKRK 840
Score = 44 (20.5 bits), Expect = 2.0e-15, Sum P(4) = 2.0e-15
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 454 DEEEADEKNGETYGLSSEFSVNKKRKK 480
DE+E DE++ E SV +++KK
Sbjct: 117 DEDEEDEEDDEDEFNLPNVSVEQRKKK 143
Score = 43 (20.2 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 403 LEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKN 462
+ED D + + + + + ++ K D++ ++ E K D E+ +E+
Sbjct: 317 IEDGEDDLCGIEIEEFKDKKKKVENDKITK-DILGQVDKLLKKETKKVDDSDTEDDEEEE 375
Query: 463 GETYGLSSEFSVNKKRK 479
E VNKKRK
Sbjct: 376 EEEV-----LFVNKKRK 387
Score = 41 (19.5 bits), Expect = 5.8e-24, Sum P(6) = 5.8e-24
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 156 SSVENMNSSQIRDTFGNAYHLAGPSTVNS 184
+S++ +I++ + + + GPSTV S
Sbjct: 221 ASIKKPFGGEIKNDYFSKFLYTGPSTVTS 249
Score = 41 (19.5 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 440 YSIV-TNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
+S+V N V + + D E+D + + +S++S ++KR+K
Sbjct: 15 FSMVDVNYVSESENSDNYESDASDYSSDN-NSDYSDSEKRRK 55
Score = 38 (18.4 bits), Expect = 8.1e-15, Sum P(4) = 8.1e-15
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
VTN KQ S +++ K T + + S KK+K+
Sbjct: 72 VTNT--KQSSTQSLKSNNKKSSTSSNNKKSSPIKKKKQ 107
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 231 (86.4 bits), Expect = 6.4e-24, Sum P(5) = 6.4e-24
Identities = 47/118 (39%), Positives = 73/118 (61%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ +MLD++E L Y ++DGT ++ +R + +N D I V L++ + G
Sbjct: 848 LLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNEDASIFVFLLTTRVGG 907
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
LG+N+ A+ VI+ D WNP+T+ QA +RA RIGQ + VTV RL T+E++I Q
Sbjct: 908 LGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQ 965
Score = 99 (39.9 bits), Expect = 6.4e-24, Sum P(5) = 6.4e-24
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQGLGKTISIIALI 317
G L L K+Q+ + W+ + LHC GGIL D+ GLGKTI IIA +
Sbjct: 490 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFL 535
Score = 71 (30.1 bits), Expect = 6.4e-24, Sum P(5) = 6.4e-24
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
T++VCP +V+ QW +E P +++ GS T +L + + +++T+YS
Sbjct: 558 TIIVCPTTVMHQWVKEFHTWWPPFRV--AILHETGSFTHKKEKLVRDIAHCHGILITSYS 615
Query: 442 IV 443
+
Sbjct: 616 YI 617
Score = 56 (24.8 bits), Expect = 6.4e-24, Sum P(5) = 6.4e-24
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI 544
+++ W V+LDE I+N + AC R I
Sbjct: 624 ISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRII 661
Score = 51 (23.0 bits), Expect = 6.4e-24, Sum P(5) = 6.4e-24
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 589 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 645
+SL+ D K E + +L + K ++ F D+ V + I L+ LR+ C+HP
Sbjct: 741 MSLSLPD--KNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQIFSGLVALRKICNHP 798
>POMBASE|SPAC144.05 [details] [associations]
symbol:SPAC144.05 "ATP-dependent DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 PomBase:SPAC144.05 Prosite:PS00518
GO:GO:0005524 EMBL:CU329670 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 KO:K15710 OMA:HTWGVSG OrthoDB:EOG4Q2HPM PIR:T37672
RefSeq:NP_594666.1 ProteinModelPortal:Q9UTL9
EnsemblFungi:SPAC144.05.1 GeneID:2542902 KEGG:spo:SPAC144.05
NextBio:20803941 Uniprot:Q9UTL9
Length = 1375
Score = 196 (74.1 bits), Expect = 6.8e-24, Sum P(6) = 6.8e-24
Identities = 44/127 (34%), Positives = 69/127 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K +VFSQW +LD++ S + I + R DG +++ +K F +R + V+ + ++
Sbjct: 1206 KVVVFSQWLDVLDVLHKSFEANGIVFIRFDGK----SKNTCLKRFKEERSLQVLTLHARS 1261
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
+ GL + A+HV + + N E QA+ R HRIGQTRP V + DTVE IL L
Sbjct: 1262 QSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYIVEDTVEGHILNLS 1321
Query: 939 DDKRKMV 945
K + +
Sbjct: 1322 LTKHEQL 1328
Score = 99 (39.9 bits), Expect = 6.8e-24, Sum P(6) = 6.8e-24
Identities = 45/220 (20%), Positives = 95/220 (43%)
Query: 517 LDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFI 576
++E + I + +R C L + S I++ + + + YK+LQ + ++M
Sbjct: 931 MEEYERIDAMAKEQSRICQKLEKELSIIQLTYN-SRIEYYKQLQEISDSLM--------- 980
Query: 577 DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSL--KKFKAFADAGTVNQNYANILLM 634
P+ N+ + K D K+++ +++ + K+ D + N A ++
Sbjct: 981 -PPPVSNISLN--NYVKDDEKKQKFLNSVIIKASVILEKEISEKQDEASQTTNVAELVNQ 1037
Query: 635 LLRLRQACDHPLLVKEYDFDSVG---KISG-EMAKRLPRDMLIDLLSRLETSSAICCVCS 690
+ H L++E + + KI+ E +R ++ ++ + E S IC +C
Sbjct: 1038 KISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNLYEHIVLKAE-SHQICIICR 1096
Query: 691 DPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730
D + +T CGH++C C ++ + CP CK +L
Sbjct: 1097 DIIKQGFITTCGHLYCSFCLEAWLKHSSS-CPM--CKTKL 1133
Score = 79 (32.9 bits), Expect = 6.8e-24, Sum P(6) = 6.8e-24
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY----DVVLTTYS 441
TL++ P+++L QW E++ VP +L V Y G R + ++ AK D+V+T+YS
Sbjct: 333 TLIITPSTILDQWLSEIDLHVP---SLKVFHYQG-IRKSNGLKSAKIFLDCDIVVTSYS 387
Score = 75 (31.5 bits), Expect = 1.6e-21, Sum P(6) = 1.6e-21
Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 577 DGQPIINLPPK-TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLML 635
D + + LPP+ I +T S E Y+ L S++ K F D + ++ L
Sbjct: 513 DVEEELKLPPQHRICMT-TRLSVVEETNYQDLLSEAAKSLHFFKDRNLDLCDEESMRRWL 571
Query: 636 LRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETS 682
+RLRQAC HP + F + G K + D+L+ +L + ++
Sbjct: 572 VRLRQACCHP----QVGFGNKSAFGGGPMKSI-NDVLVFMLEQTNST 613
Score = 70 (29.7 bits), Expect = 6.8e-24, Sum P(6) = 6.8e-24
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILAD+ G+GKT+ ++ L+
Sbjct: 285 GGILADEMGMGKTLEVLGLV 304
Score = 63 (27.2 bits), Expect = 6.8e-24, Sum P(6) = 6.8e-24
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVAR 532
PL V W+R+ +DEAQ ++ ++ VA+
Sbjct: 415 PLIDVCWWRICVDEAQMVETSQSNVAQ 441
Score = 42 (19.8 bits), Expect = 6.8e-24, Sum P(6) = 6.8e-24
Identities = 23/104 (22%), Positives = 40/104 (38%)
Query: 192 YVKKNDDDIMMYEGNRILPSSLMHGKSV----SMTQFGGPSDLAYRSGSADERA-VGGDE 246
YV ++++ G IL S L ++ S + + D + +E + + +
Sbjct: 130 YVTVKGSELILSFGISILDSFLAPQDAILSSGSSSSYTALLDYTFLPSEDEEYSCLDINT 189
Query: 247 RLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
L Y A + + D LS LL Q L WM ++E
Sbjct: 190 ALFYDCARKLAKSLRFANVSRDPRLSSELLPFQMRVLEWMKRRE 233
Score = 42 (19.8 bits), Expect = 3.1e-12, Sum P(4) = 3.1e-12
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 608 ESDSLKKFKAFADAGTVNQNYANILLMLL 636
+S+ LK K F D V +Y+++ LL
Sbjct: 366 KSNGLKSAKIFLDCDIVVTSYSDLRFELL 394
Score = 37 (18.1 bits), Expect = 2.1e-05, Sum P(6) = 2.1e-05
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 880 NLGLNMVAASHVILLDLWW 898
NL +N H I L +W+
Sbjct: 674 NLPINYFGLDHFIHLRVWY 692
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 242 (90.2 bits), Expect = 7.1e-24, Sum P(5) = 7.1e-24
Identities = 53/155 (34%), Positives = 91/155 (58%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS-LPARDRAVKDFNTDREITVMLMSLK 877
+++VFSQ R+L+++E L + R+DGT++ L R++ + F +++ +V L++ +
Sbjct: 480 QTLVFSQSRRILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQ 539
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
G +GL + AAS V++ D WNP T+ QAVDR +RIGQ V V RL TVE++I +
Sbjct: 540 VGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRR 599
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972
Q K ++ G+ + + ++LR LF +
Sbjct: 600 QVFKDSLIRQTTGDKKN--PFRYFSKQELRELFTI 632
Score = 86 (35.3 bits), Expect = 7.1e-24, Sum P(5) = 7.1e-24
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 275 LLKHQK--IALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++QK IA + L ++ R GGILADD GLGKT+ IIA +
Sbjct: 96 LYEYQKEGIAFLYSLYRDGRR----GGILADDMGLGKTVQIIAFL 136
Score = 74 (31.1 bits), Expect = 7.1e-24, Sum P(5) = 7.1e-24
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS---RTKDPVELAKYD-VVLTTYSIV 443
L++ P S++ W RE P + V +HG S RT++ + + + V++TTY ++
Sbjct: 149 LLIMPTSLISTWLREFVKWTP---GMRVKTFHGPSKDERTRNLCRIQQRNGVIITTYQML 205
Query: 444 TNEVPKQPSVDEEE 457
N + S++ +E
Sbjct: 206 INNWQQLSSLNGQE 219
Score = 51 (23.0 bits), Expect = 7.1e-24, Sum P(5) = 7.1e-24
Identities = 23/103 (22%), Positives = 42/103 (40%)
Query: 557 KKLQAVLRAIMLRRTKGTFI---DGQPIINLPPKTISLTKV----DFSKEE----WAFYK 605
+ L A+++ LRRTK P + L K+ + + S++ W
Sbjct: 315 ENLMAIIKPYFLRRTKEEVQKKKSSNPEVQLSEKSPDVGAICEMPSLSRKNDLIIWIRLV 374
Query: 606 KLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
L+ + +KF + + + L L L++ CDHP L+
Sbjct: 375 PLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 417
Score = 49 (22.3 bits), Expect = 7.1e-24, Sum P(5) = 7.1e-24
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRN 551
W V+LDEA IK+ T+ A ++ A + PI N
Sbjct: 222 WDYVILDEAHKIKSSSTKSAICARAIPASNRILLTGTPIQNN 263
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 246 (91.7 bits), Expect = 7.4e-24, Sum P(5) = 7.4e-24
Identities = 53/126 (42%), Positives = 79/126 (62%)
Query: 819 KSIVFSQWTRMLDLVENSL-NQHC--IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
++++F Q MLD+VE L +H + Y RLDG++ R V +FN+D I V+L++
Sbjct: 1716 RALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLT 1775
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
G LGLN+ A VI ++ WNP + QA+DRAHRIGQ + V V RL R+++E++I+
Sbjct: 1776 TMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIM 1835
Query: 936 KLQDDK 941
LQ K
Sbjct: 1836 GLQKFK 1841
Score = 81 (33.6 bits), Expect = 7.4e-24, Sum P(5) = 7.4e-24
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 260 PKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P + +P +SV L +Q+ + W+ +LH GIL DD GLGKT+ I ++
Sbjct: 1339 PNYKVPVP---ISVELRCYQQAGINWLWFLNKYNLH---GILCDDMGLGKTLQTICIL 1390
Score = 65 (27.9 bits), Expect = 7.4e-24, Sum P(5) = 7.4e-24
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELA-KYDVVLTTYSIV 443
+LV+CP ++ W E+E + + L L Y+G R K ++ K ++V+ +Y V
Sbjct: 1407 SLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVVASYDTV 1466
Query: 444 TNEV 447
++
Sbjct: 1467 RKDI 1470
Score = 65 (27.9 bits), Expect = 7.4e-24, Sum P(5) = 7.4e-24
Identities = 29/120 (24%), Positives = 52/120 (43%)
Query: 555 GYKKLQAVLRAIM---LRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES-- 609
G ++A+ R ++ LRR K + +LPPK + S + Y+ +
Sbjct: 1565 GVLAMEALHRQVLPFLLRRVKEDVLK-----DLPPKITQDLLCELSPLQLRLYEDFSNKH 1619
Query: 610 --DSLKKFKAFADAGTVNQNYA---NILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMA 664
D L K + A V +N + +I L L+ C+HP LV + + K++ ++A
Sbjct: 1620 LKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQS-EELTKVTSQLA 1678
Score = 56 (24.8 bits), Expect = 7.4e-24, Sum P(5) = 7.4e-24
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSL 553
VLDE IKN +T+ ++A L+A I PI N L
Sbjct: 1482 VLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVL 1521
Score = 43 (20.2 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 764 ILDNEYISSKIRTVLDILHTQCELNTKCS 792
+L+ +SS ++ + D+L Q EL + C+
Sbjct: 508 LLNPAQVSSIVKMLWDLLLDQDELTSACN 536
Score = 40 (19.1 bits), Expect = 1.5e-17, Sum P(4) = 1.5e-17
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 454 DEEEADEKNGETYGLSSE 471
DE+ A ++G TY +++E
Sbjct: 195 DEDVALNRSGSTYNVNAE 212
Score = 38 (18.4 bits), Expect = 9.1e-14, Sum P(3) = 9.1e-14
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 707 YQCASEYITGDD 718
+QC SEY+ D+
Sbjct: 834 HQCVSEYVYYDE 845
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 227 (85.0 bits), Expect = 8.9e-24, Sum P(4) = 8.9e-24
Identities = 50/129 (38%), Positives = 80/129 (62%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G + ++FSQ T MLD++++ ++ Y R+DG++ R A+K+F ++ I V L+S
Sbjct: 356 GGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-NQPIFVFLLS 414
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
+AG +G+N+ AA VI +D +NP + QA RAHRIGQ + V V RL RDTVE+ +
Sbjct: 415 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 474
Query: 936 KLQDDKRKM 944
+ K ++
Sbjct: 475 RKAASKLQL 483
Score = 84 (34.6 bits), Expect = 8.9e-24, Sum P(4) = 8.9e-24
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGG-ILADDQGLGKTISIIALI 317
GL + L +Q + W++Q HC G IL D+ GLGKT IAL+
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQ----CFHCQNGCILGDEMGLGKTCQTIALL 79
Score = 77 (32.2 bits), Expect = 8.9e-24, Sum P(4) = 8.9e-24
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
LV+CP SVL W E+E P LS + Y G + D + + + V+LTTY I
Sbjct: 93 LVLCPLSVLSNWKEEMERFAP---GLSCVTYTGDKEERARLQQDLRQESGFHVLLTTYEI 149
Score = 65 (27.9 bits), Expect = 8.9e-24, Sum P(4) = 8.9e-24
Identities = 35/123 (28%), Positives = 50/123 (40%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L +L+ +LRR K Q LP KT + S + +YK + +K A
Sbjct: 243 ELHRLLQPFLLRRVKA-----QVATELPKKTEVVVYHGMSALQKKYYKAI---LMKDLDA 294
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRL-PRDMLIDLL 676
F + NIL +LR+ DHP L FD V E+ + L + LL
Sbjct: 295 FENETAKKVKLQNILT---QLRKCVDHPYL-----FDGVEPEPFEVGEHLIEASGKLHLL 346
Query: 677 SRL 679
RL
Sbjct: 347 DRL 349
Score = 42 (19.8 bits), Expect = 1.9e-21, Sum P(4) = 1.9e-21
Identities = 22/87 (25%), Positives = 33/87 (37%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK-RSTIK-IPISRNSLHGYKKLQAVLR 564
L W + +DEA +KN + + R A R + PI +NSL L V+
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPI-QNSLRELYSLLCVVE 215
Query: 565 A-IMLRRTKGTFIDGQPIINLPPKTIS 590
+ R F+ I K+ S
Sbjct: 216 PDLFCREQVEDFVQRYQDIEKESKSAS 242
Score = 39 (18.8 bits), Expect = 0.00038, Sum P(4) = 0.00038
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 795 EIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCI 842
E+ DL G + SSA + ++ + V T E+++ HC+
Sbjct: 698 ELEDLEGGDESSAELAYEDLDSTSINYVSGDVTHPQAGEEDAVIVHCV 745
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 228 (85.3 bits), Expect = 9.1e-24, Sum P(5) = 9.1e-24
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ TR+LD++E+ +Y RLDG R ++ +N V ++S +AG
Sbjct: 488 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNEPGSSKFVFMLSTRAG 547
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VIL D WNP + QA+DRAHRIGQT+ V V R +TVE+RI++ +
Sbjct: 548 GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 607
Query: 940 DKRKM 944
K ++
Sbjct: 608 MKLRL 612
Score = 86 (35.3 bits), Expect = 9.1e-24, Sum P(5) = 9.1e-24
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K D + +LPPK V SK + +Y ++ +K
Sbjct: 367 ERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIYVGLSKMQREWYTRI---LMKDID 418
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 419 ILNSAGKLDK--MRLLNILMQLRKCCNHPYL 447
Score = 69 (29.3 bits), Expect = 9.1e-24, Sum P(5) = 9.1e-24
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 165 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 204
Score = 59 (25.8 bits), Expect = 9.1e-24, Sum P(5) = 9.1e-24
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTYSIVT 444
+V+ P S L W E + VP A+ LI R +D + ++DV +T+Y ++
Sbjct: 218 MVLVPKSTLHNWMNEFKRWVPTLRAVC-LIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLI 276
Query: 445 NE 446
E
Sbjct: 277 KE 278
Score = 55 (24.4 bits), Expect = 9.1e-24, Sum P(5) = 9.1e-24
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLRAI 566
K W +V+DEA IKN +++++ + + P+ +N+LH +L A+L +
Sbjct: 284 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL-QNNLH---ELWALLNFL 339
Query: 567 M 567
+
Sbjct: 340 L 340
Score = 44 (20.5 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 157 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 198
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 220 (82.5 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 61/160 (38%), Positives = 85/160 (53%)
Query: 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDREITVM 872
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F D + V
Sbjct: 593 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVF 652
Query: 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE- 931
L+ +AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 653 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 712
Query: 932 ---DRI-LKLQDDKRKMV-ASAFGEDQGGGTASRLTVEDL 966
D+ LKL DK + + G G S++ VEDL
Sbjct: 713 EMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 752
Score = 118 (46.6 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
KKLQ++L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 466 KKLQSILKPMMLRRLKD---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 516
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G N N++ ++ LR+ C+HP L+
Sbjct: 517 SFLSKGANQHNMPNLINTMMELRKCCNHPYLI 548
Score = 63 (27.2 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 255 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
Score = 58 (25.5 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L K+ W VV+DEA +KN ++
Sbjct: 381 CPELKKIQWRCVVIDEAHRLKNRNCKL 407
Score = 55 (24.4 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
L++ P S + W RE ++ ++YHG ++ ++ +
Sbjct: 310 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIF 365
Query: 432 KYDVVLTTYSIVTNEVPK 449
K+ VV+TT+ ++ + P+
Sbjct: 366 KFQVVITTFEMILADCPE 383
Score = 40 (19.1 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 895 DLWWNPTTEDQAVDRAHRIGQTRPV 919
D++ P TE++A +RI R V
Sbjct: 1317 DIYVEPITEERAARTLYRIELLRKV 1341
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 220 (82.5 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 61/160 (38%), Positives = 85/160 (53%)
Query: 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDREITVM 872
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F D + V
Sbjct: 593 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVF 652
Query: 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE- 931
L+ +AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 653 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 712
Query: 932 ---DRI-LKLQDDKRKMV-ASAFGEDQGGGTASRLTVEDL 966
D+ LKL DK + + G G S++ VEDL
Sbjct: 713 EMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 752
Score = 118 (46.6 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
KKLQ++L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 466 KKLQSILKPMMLRRLKD---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 516
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G N N++ ++ LR+ C+HP L+
Sbjct: 517 SFLSKGANQHNMPNLINTMMELRKCCNHPYLI 548
Score = 63 (27.2 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 255 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
Score = 58 (25.5 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L K+ W VV+DEA +KN ++
Sbjct: 381 CPELKKIQWRCVVIDEAHRLKNRNCKL 407
Score = 55 (24.4 bits), Expect = 1.1e-23, Sum P(5) = 1.1e-23
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
L++ P S + W RE ++ ++YHG ++ ++ +
Sbjct: 310 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIF 365
Query: 432 KYDVVLTTYSIVTNEVPK 449
K+ VV+TT+ ++ + P+
Sbjct: 366 KFQVVITTFEMILADCPE 383
Score = 40 (19.1 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 895 DLWWNPTTEDQAVDRAHRIGQTRPV 919
D++ P TE++A +RI R V
Sbjct: 1317 DIYVEPITEERAARTLYRIELLRKV 1341
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 222 (83.2 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 53/147 (36%), Positives = 82/147 (55%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAG 879
++F Q T M+++ E+ LN Y RLDG+ R + FN + ++ + ++S +AG
Sbjct: 870 LMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNSDLFLFMLSTRAG 929
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ A VI+ D WNP + QA DRAHRIGQ + V V RL ++VE++IL
Sbjct: 930 GLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANSVEEKILAAAR 989
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASRL 961
KL D++ + A F + G ++
Sbjct: 990 YKLNVDEKVIQAGKFDQRSTGAERKQM 1016
Score = 83 (34.3 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
K T+ G ++ L +Q L WM+ +L+ GILAD+ GLGKTI I+L+
Sbjct: 519 KQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNLN---GILADEMGLGKTIQTISLV 572
Score = 77 (32.2 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 35/134 (26%), Positives = 64/134 (47%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP KT + K D S + Y+ ++ L K
Sbjct: 745 RRLHKVLRPFLLRRLKKE-VESQ----LPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAK 799
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS------VGKISGEMAKRLPRD 670
+ A +++ ++ LR+ C+HP L + DS V +++G R+
Sbjct: 800 MSSGA-------RSLMNTVVHLRKLCNHPFLFPNIE-DSCRAYWKVNEVNGTDLMRVAGK 851
Query: 671 M-LID-LLSRLETS 682
+ L+D +L +L+ +
Sbjct: 852 LELLDRILPKLKAT 865
Score = 70 (29.7 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE--LAK--YDVVLTTYSIV 443
LV+ P S L W E P +++ +IY G + VE + K ++V++TTY V
Sbjct: 586 LVIVPLSTLSNWQNEFAKWAP---SVTTIIYKGTKDARRRVEGQIRKGAFNVLMTTYEYV 642
Query: 444 TNE 446
E
Sbjct: 643 IKE 645
Score = 54 (24.1 bits), Expect = 1.2e-23, Sum P(5) = 1.2e-23
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQV 530
L K+ W +++DE +KNH ++
Sbjct: 649 LGKIRWKYMIIDEGHRLKNHNCKL 672
Score = 47 (21.6 bits), Expect = 4.7e-20, Sum P(5) = 4.7e-20
Identities = 19/81 (23%), Positives = 40/81 (49%)
Query: 258 NQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
N+P ++P G+ V +LK ++ + + + L+ L + D L I + AL
Sbjct: 162 NRPTT-ISVPSGIDPVGMLKQRENMIQNRIGLRMKLLNNLPADIPDHMKLKAEIELRALR 220
Query: 318 QMQRSLQSKSKTEVLGNQKTE 338
+ +LQ++ ++EV+ K +
Sbjct: 221 LV--NLQTQVRSEVMACLKRD 239
Score = 41 (19.5 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++PDK
Sbjct: 755 LLRRLKKEVESQLPDK 770
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 241 (89.9 bits), Expect = 1.3e-23, Sum P(5) = 1.3e-23
Identities = 57/148 (38%), Positives = 86/148 (58%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN + L+S +AG
Sbjct: 427 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 486
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VI+ D WNP + QA RAHRIGQ + V + R R +VE+RI ++
Sbjct: 487 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVA- 545
Query: 940 DKRKMVASAFGEDQGGGTAS-RLTVEDL 966
KRKM+ + G G+ S +T ++L
Sbjct: 546 -KRKMMLTHLVVRPGLGSKSGSMTKQEL 572
Score = 96 (38.9 bits), Expect = 1.3e-23, Sum P(5) = 1.3e-23
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
KKL +L MLRR K N+P KT + +V+ S+ + +YK + + + F+
Sbjct: 301 KKLHDLLGPHMLRRLKADVFK-----NMPAKTELIVRVELSQMQKKYYKFILT---RNFE 352
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
A G NQ ++L +++ L++ C+HP L
Sbjct: 353 ALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 381
Score = 57 (25.1 bits), Expect = 1.3e-23, Sum P(5) = 1.3e-23
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 105 ILADEMGLGKTVQTIVFLYSLYKEGHSK 132
Score = 51 (23.0 bits), Expect = 1.3e-23, Sum P(5) = 1.3e-23
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLR 538
L + W +V+DEA +KN++++ R S +
Sbjct: 219 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYK 250
Score = 50 (22.7 bits), Expect = 1.3e-23, Sum P(5) = 1.3e-23
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 136 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 173
Score = 47 (21.6 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 730 LGADVVFSKTTLKNC--VSDDGGGSPTDSPFADKSGILDNE--YISS 772
LG D K LK + DD P D+P D + D + YI S
Sbjct: 32 LGEDTRLPKRLLKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDS 78
Score = 45 (20.9 bits), Expect = 4.1e-23, Sum P(5) = 4.1e-23
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 193 RMKKEVQI-KFHVLLTSYELIT 213
>SGD|S000004237 [details] [associations]
symbol:IRC20 "Putative helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=IGI;IMP] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000004237
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:BK006945
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 HSSP:Q9LRB7
EMBL:U20865 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045003 PIR:S59393
RefSeq:NP_013348.1 ProteinModelPortal:Q06554 SMR:Q06554
DIP:DIP-6373N IntAct:Q06554 MINT:MINT-700566 STRING:Q06554
PaxDb:Q06554 EnsemblFungi:YLR247C GeneID:850949 KEGG:sce:YLR247C
CYGD:YLR247c GeneTree:ENSGT00700000104571 KO:K15710 OMA:HTWGVSG
OrthoDB:EOG4Q2HPM NextBio:967413 Genevestigator:Q06554
GermOnline:YLR247C Uniprot:Q06554
Length = 1556
Score = 190 (71.9 bits), Expect = 1.4e-23, Sum P(6) = 1.4e-23
Identities = 71/278 (25%), Positives = 124/278 (44%)
Query: 686 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPR--CKEQLGADVVFSKTTLKN 743
C +C E + CGH FC C ++ CP + C + F +T K
Sbjct: 1239 CSICLGEVEIGAIIKCGHYFCKSCILTWLRAHSK-CPICKGFCSISEVYNFKFKNSTEKR 1297
Query: 744 C--VSD---DGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHD 798
+ + +G S D+ ++++ I+ N S++ + + Q + + I +
Sbjct: 1298 EKEIQEPRREGADSSQDN--SNENSIISN---MSEVEKLFGNKYEQFHQINEVHQIHIKE 1352
Query: 799 LAGSNGS------SAVHSKSPIEG--PIKSIVFSQWTRMLDLVENSLNQHCIQYRR-LDG 849
G+ S + KS E P + I++SQ T L ++ L + I++ L
Sbjct: 1353 SFGAKIDFVIKLISYLRLKSEQENADPPQVILYSQKTEYLKVIGKVLKLYHIEHLACLSN 1412
Query: 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDR 909
T ++ + +F +T +L+++K GLN++ A H+ LLD N + E QA+ R
Sbjct: 1413 TANV---GETINNFKRQPSVTCLLLNVKTLGAGLNLINAKHIFLLDPILNNSDELQAMGR 1469
Query: 910 AHRIGQTRPVTVTRLTIRDTVEDRILK----LQDDKRK 943
+RIGQ V IR+TVE+ IL+ L++ KRK
Sbjct: 1470 NNRIGQDEETFVWNFMIRNTVEENILRYKCILEERKRK 1507
Score = 94 (38.1 bits), Expect = 1.4e-23, Sum P(6) = 1.4e-23
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS------RTKDPV--ELAKYDVVLT 438
TL++CP ++L+QW E+E +L Y G + +T D +L +YD+++T
Sbjct: 433 TLIICPNAILKQWLEEIELHAN---SLKWYTYRGYNEIMKDCKTVDEAVQQLCQYDIIVT 489
Query: 439 TYSIVTNEV 447
+Y+I+ EV
Sbjct: 490 SYNIIATEV 498
Score = 80 (33.2 bits), Expect = 1.4e-23, Sum P(6) = 1.4e-23
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 296 CLGGILADDQGLGKTISIIALIQM-QRSLQSKSKTEVLGNQKT 337
C G+LA++ GLGKTI I++LI + +R L+ T + +T
Sbjct: 384 CAKGVLAEEMGLGKTIEILSLILLNRRKLKDSEATFIDDENRT 426
Score = 69 (29.3 bits), Expect = 1.4e-23, Sum P(6) = 1.4e-23
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 501 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI---PISRNSLHGYK 557
DY PLA + ++R++LDE Q +++ T A+ C SL + T + PI +++ ++
Sbjct: 518 DYS-SPLALMQFYRIILDEVQMLRSSSTYSAK-CTSLLHRIHTWGVSGTPIQ--NIYNFR 573
Query: 558 KLQAVLR 564
+ + L+
Sbjct: 574 MIMSYLK 580
Score = 61 (26.5 bits), Expect = 1.4e-23, Sum P(6) = 1.4e-23
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 259 QPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+P + ++PD L VNLL Q+ ++ WML KE
Sbjct: 277 KPFLPQSIPD--LKVNLLPFQRESVEWMLIKE 306
Score = 56 (24.8 bits), Expect = 1.4e-23, Sum P(6) = 1.4e-23
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 582 INLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL--MLLRLR 639
I++P + + ++F+ EW Y L ++ L+ + G+ + +N L L RLR
Sbjct: 648 IHIPRQHNFIIPLEFAPIEWDNYLNLWNNFLE-LSGYNSDGSGSPRVSNAFLNEWLSRLR 706
Query: 640 QACDHPL 646
C H L
Sbjct: 707 YICCHAL 713
Score = 46 (21.3 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 24/103 (23%), Positives = 44/103 (42%)
Query: 555 GYKKLQAVLRAIMLRRTK-----GTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609
G K +L I+L R K TFID + KT + + ++W +L +
Sbjct: 394 GLGKTIEILSLILLNRRKLKDSEATFIDDENRTITKTKTTLIICPNAILKQWLEEIELHA 453
Query: 610 DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
+SLK + G N+ + + ++Q C + ++V Y+
Sbjct: 454 NSLKWYTY---RG-YNEIMKDCKTVDEAVQQLCQYDIIVTSYN 492
Score = 37 (18.1 bits), Expect = 4.6e-08, Sum P(6) = 4.6e-08
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 760 DKSGILDNEYISSKIRTVLDILH 782
+ G+L N +R ++++LH
Sbjct: 846 NNDGMLSNHLKKKGLRAMMNLLH 868
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 238 (88.8 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 51/130 (39%), Positives = 82/130 (63%)
Query: 815 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 874
+G + ++FSQ T++LD++++ ++ Y RLDG++ R A+K+F + I V L+
Sbjct: 361 DGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKNFG-QQPIFVFLL 419
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 934
S +AG +G+N+ AA VI D +NP + QA+ RAHRIGQ +PV + RL RDTVE+ I
Sbjct: 420 STRAGGVGMNLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKIIRLIGRDTVEEII 479
Query: 935 LKLQDDKRKM 944
+ K ++
Sbjct: 480 YRRAASKLRL 489
Score = 80 (33.2 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV-----ELAKYDVVLTTYS 441
+L++CP SVL W ELE P LS + Y G + + E + + V+LTTY
Sbjct: 98 SLILCPLSVLSNWKEELERFAP---GLSFVTYVGNKEERYKLQQNLKEQSHFRVLLTTYE 154
Query: 442 I 442
I
Sbjct: 155 I 155
Score = 76 (31.8 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI-QMQRSLQSKS 327
GL + L +Q + W++Q + H G IL D+ GLGKT I+L+ + + L +K
Sbjct: 40 GLTGIKLRPYQLDGVNWLVQCY-QVQH--GCILGDEMGLGKTCQTISLLLYLTKKLTNKE 96
Query: 328 KTEVL 332
++ +L
Sbjct: 97 RSLIL 101
Score = 56 (24.8 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
K+L +L+ +LRR K + +LP K + S + +YK + + L F+
Sbjct: 248 KELHNLLQPFLLRRVKS-----EVTADLPKKVEVVLYHGMSALQRKYYKAILTKDLDAFE 302
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
+ QN +L++LR+ HP L
Sbjct: 303 GGTGRKVMLQN------VLIQLRKCVAHPYL 327
Score = 47 (21.6 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG-YKKLQAVLRAIML 568
W +V+DEA +KN + + L S + PI +NSL Y L + I
Sbjct: 168 WAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPI-QNSLQELYSLLSFIEPDIFP 226
Query: 569 RRTKGTFID 577
R+ F++
Sbjct: 227 RKQVKEFVE 235
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 232 (86.7 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ TR+LD++E+ +Y RLDG R ++ +N V ++S +AG
Sbjct: 503 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAG 562
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VIL D WNP + QA+DRAHRIGQT+ V V R +TVE+RI++ +
Sbjct: 563 GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 622
Query: 940 DKRKM 944
K ++
Sbjct: 623 MKLRL 627
Score = 86 (35.3 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K D + +LPPK V SK + +Y ++ +K
Sbjct: 382 ERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIYVGLSKMQREWYTRI---LMKDID 433
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 434 ILNSAGKMDK--MRLLNILMQLRKCCNHPYL 462
Score = 69 (29.3 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 54 (24.1 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLH 554
K W +V+DEA IKN +++++ + + P+ +N+LH
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL-QNNLH 345
Score = 54 (24.1 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 446 E 446
E
Sbjct: 293 E 293
Score = 44 (20.5 bits), Expect = 4.7e-21, Sum P(5) = 4.7e-21
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 172 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 213
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 232 (86.7 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ TR+LD++E+ +Y RLDG R ++ +N V ++S +AG
Sbjct: 503 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAG 562
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VIL D WNP + QA+DRAHRIGQT+ V V R +TVE+RI++ +
Sbjct: 563 GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 622
Query: 940 DKRKM 944
K ++
Sbjct: 623 MKLRL 627
Score = 86 (35.3 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K D + +LPPK V SK + +Y ++ +K
Sbjct: 382 ERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIYVGLSKMQREWYTRI---LMKDID 433
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 434 ILNSAGKMDK--MRLLNILMQLRKCCNHPYL 462
Score = 69 (29.3 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 54 (24.1 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLH 554
K W +V+DEA IKN +++++ + + P+ +N+LH
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL-QNNLH 345
Score = 54 (24.1 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 446 E 446
E
Sbjct: 293 E 293
Score = 44 (20.5 bits), Expect = 4.7e-21, Sum P(5) = 4.7e-21
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 172 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 213
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 232 (86.7 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ TR+LD++E+ +Y RLDG R ++ +N V ++S +AG
Sbjct: 503 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAG 562
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VIL D WNP + QA+DRAHRIGQT+ V V R +TVE+RI++ +
Sbjct: 563 GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 622
Query: 940 DKRKM 944
K ++
Sbjct: 623 MKLRL 627
Score = 86 (35.3 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K D + +LPPK V SK + +Y ++ +K
Sbjct: 382 ERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIYVGLSKMQREWYTRI---LMKDID 433
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 434 ILNSAGKMDK--MRLLNILMQLRKCCNHPYL 462
Score = 69 (29.3 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 54 (24.1 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLH 554
K W +V+DEA IKN +++++ + + P+ +N+LH
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL-QNNLH 345
Score = 54 (24.1 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 446 E 446
E
Sbjct: 293 E 293
Score = 44 (20.5 bits), Expect = 4.7e-21, Sum P(5) = 4.7e-21
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 172 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 213
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 183 (69.5 bits), Expect = 1.5e-23, Sum P(6) = 1.5e-23
Identities = 38/89 (42%), Positives = 58/89 (65%)
Query: 857 DRAVKDFNTDREIT-VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQ 915
+ A++ FN + ++S +AG LG+N+ +A VIL D WNP + QA+DRAHRIGQ
Sbjct: 562 NEAIEAFNIPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQ 621
Query: 916 TRPVTVTRLTIRDTVEDRILKLQDDKRKM 944
+PV V RL +TVE+RI++ + K ++
Sbjct: 622 KKPVRVFRLITDNTVEERIVERAEIKLRL 650
Score = 86 (35.3 bits), Expect = 1.5e-23, Sum P(6) = 1.5e-23
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VL+ +LRR K T ++ +LPPK + SK + +Y K+ +K
Sbjct: 388 ERLHTVLKPFLLRRIK-TDVEK----SLPPKKEIKIYLGLSKMQREWYTKI---LMKDID 439
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 440 VLNSAGKMDK--MRLLNILMQLRKCCNHPYL 468
Score = 82 (33.9 bits), Expect = 1.5e-23, Sum P(6) = 1.5e-23
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 863
++FSQ TR+LD++E+ +Y RLDG R+ +KDF
Sbjct: 509 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEILKDF 551
Score = 70 (29.7 bits), Expect = 1.5e-23, Sum P(6) = 1.5e-23
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 186 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 63 (27.2 bits), Expect = 1.5e-23, Sum P(6) = 1.5e-23
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 443 VTNE 446
V E
Sbjct: 296 VIKE 299
Score = 55 (24.4 bits), Expect = 1.5e-23, Sum P(6) = 1.5e-23
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPIS----RNSLHGYKKLQAVLR 564
K W +V+DEA IKN +++++ +R +ST ++ ++ +N+LH +L A+L
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEI---VRDFKSTNRLLLTGTPLQNNLH---ELWALLN 358
Query: 565 AIM 567
++
Sbjct: 359 FLL 361
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 230 (86.0 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 51/126 (40%), Positives = 76/126 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++FSQ RMLD++ L ++RLDG++ R +A+ FN D E L+S +AG
Sbjct: 813 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAG 872
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ +A V++ D WNP + QA RAHRIGQ + V + RL + TVE+ I++
Sbjct: 873 GLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERA- 931
Query: 940 DKRKMV 945
K+KMV
Sbjct: 932 -KKKMV 936
Score = 93 (37.8 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 36/130 (27%), Positives = 68/130 (52%)
Query: 554 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 613
+GY+ L VL +LRR K D + +LP K + +V+ S + +YK + + +
Sbjct: 686 NGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQILRVEMSALQKQYYKWILT---R 737
Query: 614 KFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK---EYDFDSVGKISGEMAKRLPRD 670
+KA A GT + L +++ L++ C+H L+K E + ++ +I + + +
Sbjct: 738 NYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKL 795
Query: 671 MLID-LLSRL 679
+L+D LL+RL
Sbjct: 796 ILLDKLLTRL 805
Score = 67 (28.6 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 539 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 596 TTYEILLKD 604
Score = 59 (25.8 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 483 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 525
Score = 46 (21.3 bits), Expect = 1.5e-23, Sum P(5) = 1.5e-23
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGYKKLQAVLR 564
L + W + +DEA +KN + + + ++ + P+ +NSL K+L ++L
Sbjct: 608 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL-QNSL---KELWSLLH 663
Query: 565 AIM 567
IM
Sbjct: 664 FIM 666
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 211 (79.3 bits), Expect = 1.6e-23, Sum P(4) = 1.6e-23
Identities = 45/126 (35%), Positives = 77/126 (61%)
Query: 819 KSIVFSQWTRMLDLVENSLN------QHCIQYRRLDGTMSLPARDRAVKDFNTDREITVM 872
K+++F+Q +MLD++E ++ H + Y R+DGT ++ R V FN + V
Sbjct: 669 KALLFTQSRQMLDILEEFISTKDPDLSH-LNYLRMDGTTNIKGRQSLVDRFNNE-SFDVF 726
Query: 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED 932
L++ + G LG+N+ A+ +I+ D WNP+T+ QA +RA RIGQ R V++ RL + ++E+
Sbjct: 727 LLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEE 786
Query: 933 RILKLQ 938
+I Q
Sbjct: 787 KIYHRQ 792
Score = 96 (38.9 bits), Expect = 1.6e-23, Sum P(4) = 1.6e-23
Identities = 35/166 (21%), Positives = 65/166 (39%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447
L+VCPA+V++QW E + P + + G + ++ + D+ +++ N
Sbjct: 350 LIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLE----NLIMNSK 405
Query: 448 PKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKIXXXXXXXXXXXXXXXXXXIDYGCGPL 507
P S ++ + + + L S + ++K K+ L
Sbjct: 406 PSDFSYEDWKNSTRTKKA--LESSYHLDKLIDKVVTDGHILITTYVGLRIHS-----DKL 458
Query: 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRN 551
KV W VLDE I+N ++++ C L+ I PI N
Sbjct: 459 LKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNN 504
Score = 91 (37.1 bits), Expect = 1.6e-23, Sum P(4) = 1.6e-23
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+P + S+ L +QK + W+ E +C GGI+ D+ GLGKTI +IA I
Sbjct: 289 IPGEIYSL-LFNYQKTCVQWLY--ELYQQNC-GGIIGDEMGLGKTIQVIAFI 336
Score = 58 (25.5 bits), Expect = 1.6e-23, Sum P(4) = 1.6e-23
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 598 KEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHPLLV 648
K+E + KL K+ F + +NQ N+L + LR+ C+HP L+
Sbjct: 580 KKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFGIDILRKICNHPDLL 633
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 224 (83.9 bits), Expect = 1.6e-23, Sum P(4) = 1.6e-23
Identities = 48/117 (41%), Positives = 70/117 (59%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAG 879
++F Q T+++D++E+ L ++Y RLDG+ R + FN D + L+S +AG
Sbjct: 811 LMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAG 870
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936
LGLN+ A VI+ D WNP + QA DRAHRIGQ V + RL D+VE+ IL+
Sbjct: 871 GLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILE 927
Score = 85 (35.0 bits), Expect = 1.6e-23, Sum P(4) = 1.6e-23
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P L+ L ++Q L WM+ H L GILAD+ GLGKTI I+LI
Sbjct: 462 PSILVGGTLKEYQLRGLEWMVSLYNN--H-LNGILADEMGLGKTIQSISLI 509
Score = 77 (32.2 bits), Expect = 1.6e-23, Sum P(4) = 1.6e-23
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----LAKYDVVLTTYSIV 443
LV+ P S + W E E P +L+ +IY G + ++ + +DV+LTTY +
Sbjct: 523 LVIVPLSTITNWTLEFEKWAP---SLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYI 579
Query: 444 TNE 446
+
Sbjct: 580 IKD 582
Score = 74 (31.1 bits), Expect = 1.6e-23, Sum P(4) = 1.6e-23
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ +LP K + K S + Y+++ LK
Sbjct: 684 RRLHKVLRPFLLRRLKKE-VEK----DLPDKVEKVIKCKLSGLQQQLYQQM----LKHNA 734
Query: 617 AFADAGTVNQNYANILLM---LLRLRQACDHPLLVKEYD 652
F AGT I + +++LR+ C+HP + E +
Sbjct: 735 LFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVE 773
Score = 51 (23.0 bits), Expect = 3.6e-21, Sum P(4) = 3.6e-21
Identities = 23/98 (23%), Positives = 44/98 (44%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI---PISRNSLHGYKKLQAVL 563
L+K W +++DE +KN +++++ R+ + + P+ N + L VL
Sbjct: 586 LSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVL 645
Query: 564 RAIMLRRTKGTFIDGQPIINLP-PKTISLTKVDFSKEE 600
I + TF D N P T + K++ ++EE
Sbjct: 646 PKIF--NSAKTFEDW---FNTPFANTGTQEKLELTEEE 678
Score = 38 (18.4 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E +PDK
Sbjct: 694 LLRRLKKEVEKDLPDK 709
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 230 (86.0 bits), Expect = 1.9e-23, Sum P(5) = 1.9e-23
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ TR+LD++E+ +Y RLDG R ++ +N V ++S +AG
Sbjct: 502 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAG 561
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VIL D WNP + QA+DRAHRIGQT+ V V R +TVE+RI++ +
Sbjct: 562 GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 621
Query: 940 DKRKM 944
K ++
Sbjct: 622 MKLRL 626
Score = 86 (35.3 bits), Expect = 1.9e-23, Sum P(5) = 1.9e-23
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K D + +LPPK V SK + +Y ++ +K
Sbjct: 381 ERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIYVGLSKMQREWYTRI---LMKDID 432
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 433 ILNSAGKMDK--MRLLNILMQLRKCCNHPYL 461
Score = 69 (29.3 bits), Expect = 1.9e-23, Sum P(5) = 1.9e-23
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 55 (24.4 bits), Expect = 1.9e-23, Sum P(5) = 1.9e-23
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 446 E 446
E
Sbjct: 292 E 292
Score = 54 (24.1 bits), Expect = 1.9e-23, Sum P(5) = 1.9e-23
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLH 554
K W +V+DEA IKN +++++ + + P+ +N+LH
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL-QNNLH 344
Score = 44 (20.5 bits), Expect = 6.2e-21, Sum P(5) = 6.2e-21
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 171 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 212
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 217 (81.4 bits), Expect = 2.1e-23, Sum P(6) = 2.1e-23
Identities = 60/159 (37%), Positives = 84/159 (52%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+ D + V L+
Sbjct: 1198 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1257
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ + V V RL R++ E
Sbjct: 1258 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREM 1317
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA--SRLTVEDL 966
DR LKL DK + + + E GG S+ +EDL
Sbjct: 1318 FDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDL 1356
Score = 113 (44.8 bits), Expect = 2.1e-23, Sum P(6) = 2.1e-23
Identities = 29/93 (31%), Positives = 52/93 (55%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + L PK ++ +V+ + + +Y+ + L+K
Sbjct: 1069 QKLQAILKPMMLRRLKE---DVEK--KLAPKEETIIEVELTNIQKKYYRAI----LEKNF 1119
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVK 649
+F G N N++ ++ LR+ C+HP L+K
Sbjct: 1120 SFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIK 1152
Score = 64 (27.6 bits), Expect = 2.1e-23, Sum P(6) = 2.1e-23
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q L W+L +C ILAD+ GLGKTI I +
Sbjct: 861 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 900
Score = 63 (27.2 bits), Expect = 2.1e-23, Sum P(6) = 2.1e-23
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKN 525
GCG L + W V++DEA +KN
Sbjct: 983 GCGELNAIEWRCVIIDEAHRLKN 1005
Score = 54 (24.1 bits), Expect = 2.1e-23, Sum P(6) = 2.1e-23
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
L++ P S + W RE ++V++YHG ++ ++
Sbjct: 913 LIIAPLSTIANWEREFRTWTD----INVVVYHGSLISRQMIQ 950
Score = 53 (23.7 bits), Expect = 2.1e-23, Sum P(6) = 2.1e-23
Identities = 34/162 (20%), Positives = 55/162 (33%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQP 147
S+ Q S+ + S+++S N + + P N +D+ S+ + R +
Sbjct: 267 SNSQQFSSHYSFSSNHVSPNSLLQPSAVLAPNHTNQTLSDFTG-SNSFSPHRGIKQESTQ 325
Query: 148 HSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNR 207
H LN + + N GN P +N + + D + G
Sbjct: 326 HMLNPNTSLNSNNFQMLHSSHPQGNYNSKLSPVHMNFPDPVDSGTQMGHFSDHVETNGFS 385
Query: 208 ILPSSLMHGKSVSMTQFGG--PSDLAYRS--GSADERAVGGD 245
L +L+H F G P DL DE A G D
Sbjct: 386 SLEENLLHQVESQTEPFTGLDPEDLLQEGLLPQFDESAFGQD 427
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 222 (83.2 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 61/160 (38%), Positives = 85/160 (53%)
Query: 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDREITVM 872
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F D + V
Sbjct: 795 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVF 854
Query: 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE- 931
L+ +AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 855 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 914
Query: 932 ---DRI-LKLQDDKRKMV-ASAFGEDQGGGTASRLTVEDL 966
D+ LKL DK + + G G S++ VEDL
Sbjct: 915 EMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDL 954
Score = 118 (46.6 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
KKLQ++L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 668 KKLQSILKPMMLRRLKD---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 718
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G N N++ ++ LR+ C+HP L+
Sbjct: 719 SFLSKGANQHNMPNLINTMMELRKCCNHPYLI 750
Score = 63 (27.2 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 457 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 499
Score = 58 (25.5 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L K+ W V++DEA +KN ++
Sbjct: 583 CPELKKIHWSCVIIDEAHRLKNRNCKL 609
Score = 57 (25.1 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVV 436
L++ P S + W RE ++ ++YHG ++ ++ +Y++V
Sbjct: 512 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQ--QYEMV 554
Score = 46 (21.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 721 CPAPR----CKEQLGADVVFS-KTTLKNCVSDDGGG 751
CPAP+ +E+ G +F KT N + D GGG
Sbjct: 55 CPAPKELYDVEEEAGP--LFPRKTASHNGMEDSGGG 88
Score = 42 (19.8 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS--LKKFKAF 618
++ I+ +T G+P +L + + +WA ++LE D +K K F
Sbjct: 292 IIEKILASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRF 350
Score = 40 (19.1 bits), Expect = 5.0e-05, Sum P(5) = 5.0e-05
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 848 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLG 882
DG +P R K+ NT+ ++ + +++ + G
Sbjct: 1327 DGASDVPERGHTDKEDNTEDKVDGLQKQMESSSDG 1361
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 229 (85.7 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 64/182 (35%), Positives = 99/182 (54%)
Query: 792 SIVEIHDLAGS-NGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850
S V+++ ++G S + K G + ++F Q T M+ +VE+ L IQY RLDG+
Sbjct: 674 SAVDLYRVSGKLELLSRILPKLQATGH-RVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGS 732
Query: 851 MSLPARDRAVKDFNT-DREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDR 909
R + FN + E + ++S +AG LGLN+ A VI+ D WNP + QA DR
Sbjct: 733 TKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDR 792
Query: 910 AHRIGQTRPVTVTRLTIRDTVEDRIL-----KLQDDKRKMVASAFGEDQGGGTASRLTVE 964
AHRIGQ V V RL ++VE++IL KL D++ + A F +++ G R +E
Sbjct: 793 AHRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGKF-DNRSTGAERREILE 851
Query: 965 DL 966
++
Sbjct: 852 NI 853
Score = 83 (34.3 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKS 327
S+ L +Q L WM+ +L+ GILAD+ GLGKTI IA I ++ S
Sbjct: 363 SLKLKPYQIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIAFITYLMEIKKTS 415
Score = 75 (31.5 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 25/96 (26%), Positives = 44/96 (45%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ + LP K + + D S + YK ++ L
Sbjct: 578 RRLHKVLRPFLLRRLKKE-VESE----LPDKMEFVVRCDMSALQKVLYKHMQKGLL---- 628
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
D G N ++ ++ LR+ C+HP L + +
Sbjct: 629 --LD-GKTNTGSKSLRNTMIHLRKLCNHPFLFENVE 661
Score = 69 (29.3 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK---DPV-ELAKYDVVLTTYSIV 443
LV+ P S + W E DK A + ++ Y G T+ +P+ + K++V+LTT+ V
Sbjct: 419 LVIVPLSTVPNWQNEF-DKWA--ANVHLIAYKGPKETRKVFEPIIKSGKFNVLLTTFEYV 475
Query: 444 TNE 446
E
Sbjct: 476 IRE 478
Score = 44 (20.5 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQV 530
L K+ W +++DE +KN ++
Sbjct: 482 LGKLRWKYMIIDEGHRLKNQHCKL 505
Score = 41 (19.5 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++PDK
Sbjct: 588 LLRRLKKEVESELPDK 603
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 217 (81.4 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 52/137 (37%), Positives = 79/137 (57%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARD------------RAVKDFNTDRE 868
++FSQ TR+LD++E+ +Y RLDG R+ A++ FN
Sbjct: 485 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNS 544
Query: 869 IT-VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927
+ ++S +AG LG+N+ +A VIL D WNP + QA+DRAHRIGQ +PV V RL
Sbjct: 545 SKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITD 604
Query: 928 DTVEDRILKLQDDKRKM 944
+TVE+RI++ + K ++
Sbjct: 605 NTVEERIVERAEIKLRL 621
Score = 87 (35.7 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L AVL+ +LRR K T ++ +LPPK + SK + +Y K+ +K
Sbjct: 364 ERLHAVLKPFLLRRIK-TDVEK----SLPPKKEIKIYLGLSKMQREWYTKI---LMKDID 415
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
+G +++ +L +L++LR+ C+HP L
Sbjct: 416 VLNSSGKMDK--MRLLNILMQLRKCCNHPYL 444
Score = 70 (29.7 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 162 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 201
Score = 63 (27.2 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 215 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 271
Query: 443 VTNE 446
V E
Sbjct: 272 VIKE 275
Score = 56 (24.8 bits), Expect = 2.3e-23, Sum P(5) = 2.3e-23
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPIS----RNSLHGYKKLQAVLR 564
K W +V+DEA IKN +++++ +R +ST ++ ++ +N+LH +L A+L
Sbjct: 281 KFHWRYLVIDEAHRIKNEKSKLSEI---VREFKSTNRLLLTGTPLQNNLH---ELWALLN 334
Query: 565 AIM 567
++
Sbjct: 335 FLL 337
>UNIPROTKB|D4A1K7 [details] [associations]
symbol:Ttf2 "Protein Ttf2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR002464
InterPro:IPR010666 Pfam:PF00176 Pfam:PF06839 PROSITE:PS00690
RGD:1309145 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00782268 Ensembl:ENSRNOT00000056142 ArrayExpress:D4A1K7
Uniprot:D4A1K7
Length = 950
Score = 157 (60.3 bits), Expect = 2.3e-23, Sum P(4) = 2.3e-23
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
+ GTL+VCPAS++ W E+E +V + L + +YHG +R + L+ YD+V+TTYS++
Sbjct: 621 STGTLIVCPASLIHHWKNEIEKRV-NSNKLRIYLYHGPNRIQHAKVLSTYDIVITTYSLL 679
Query: 444 TNEVP 448
E+P
Sbjct: 680 AKEIP 684
Score = 144 (55.7 bits), Expect = 2.3e-23, Sum P(4) = 2.3e-23
Identities = 35/62 (56%), Positives = 45/62 (72%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
P GL V LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI +++ Q K
Sbjct: 543 PAGL-KVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTKKN-QQK 598
Query: 327 SK 328
SK
Sbjct: 599 SK 600
Score = 102 (41.0 bits), Expect = 2.3e-23, Sum P(4) = 2.3e-23
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQAVL 563
PL +V W R++LDEA +KN R Q + A C L+A+ + PI N L Y L L
Sbjct: 705 PLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYS-LMKFL 763
Query: 564 R 564
R
Sbjct: 764 R 764
Score = 91 (37.1 bits), Expect = 3.0e-22, Sum P(4) = 3.0e-22
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 535 CSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTISLTK 593
CS + S K + S+ G ++L + ++++LRRTK G+P++ LP ++ L +
Sbjct: 765 CSPFDEFSLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVPLPARSCQLHR 824
Query: 594 VDFSKEEWAFY 604
+ S++E A Y
Sbjct: 825 LKLSEDERAVY 835
Score = 52 (23.4 bits), Expect = 2.3e-23, Sum P(4) = 2.3e-23
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 630 NILLMLLRLRQACDHPLLVK 649
++L LLRLRQ C H L+K
Sbjct: 895 HVLSQLLRLRQCCCHLSLLK 914
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 225 (84.3 bits), Expect = 2.4e-23, Sum P(4) = 2.4e-23
Identities = 50/129 (38%), Positives = 79/129 (61%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G + ++FSQ T MLD++++ ++ Y R+DG++ R A+K+F + I V L+S
Sbjct: 356 GGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGK-QPIFVFLLS 414
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
+AG +G+N+ AA VI +D +NP + QA RAHRIGQ + V V RL RDTVE+ +
Sbjct: 415 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 474
Query: 936 KLQDDKRKM 944
+ K ++
Sbjct: 475 RKAASKLQL 483
Score = 80 (33.2 bits), Expect = 2.4e-23, Sum P(4) = 2.4e-23
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-----RTKDPVELAKYDVVLTTYSI 442
L++CP SVL W E+E P LS + Y G R +D + + + V+LTTY I
Sbjct: 93 LILCPLSVLSNWKEEMERFAP---GLSCVTYTGDKEERARRQQDLRQESGFHVLLTTYEI 149
Score = 77 (32.2 bits), Expect = 2.4e-23, Sum P(4) = 2.4e-23
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 243 GGDERLIYQAALEDLNQP---KV-EATLPD-GLLSVNLLKHQKIALAWMLQKETRSLHCL 297
GG R + D +P +V E L + GL + L +Q + W++Q H
Sbjct: 3 GGSPRFLQALRAGDRPEPVRTRVQEQDLQEWGLTGIRLRSYQLEGVNWLVQ----CFHGQ 58
Query: 298 GG-ILADDQGLGKTISIIALI 317
G IL D+ GLGKT IAL+
Sbjct: 59 NGCILGDEMGLGKTCQTIALL 79
Score = 67 (28.6 bits), Expect = 2.4e-23, Sum P(4) = 2.4e-23
Identities = 35/123 (28%), Positives = 50/123 (40%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L +LR +LRR K Q LP KT + S + +YK + +K A
Sbjct: 243 ELHRLLRPFLLRRVKA-----QVATELPKKTEVVIYHGMSALQKKYYKAI---LMKDLDA 294
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRL-PRDMLIDLL 676
F + N+L +LR+ DHP L FD V E+ + L + LL
Sbjct: 295 FENETAKKVKLQNVLT---QLRKCVDHPYL-----FDGVEPEPFEVGEHLIEASGKLHLL 346
Query: 677 SRL 679
RL
Sbjct: 347 DRL 349
Score = 41 (19.5 bits), Expect = 1.1e-20, Sum P(4) = 1.1e-20
Identities = 22/87 (25%), Positives = 33/87 (37%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACC--SLRAKRSTIKIPISRNSLHG-YKKLQAVL 563
L W + +DEA +KN + + R S+ + PI +NSL Y L V
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPI-QNSLQELYSLLSVVE 215
Query: 564 RAIMLRRTKGTFIDGQPIINLPPKTIS 590
+ R F+ I K+ S
Sbjct: 216 PDLFCREQVEDFVQCYQDIEKESKSAS 242
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 230 (86.0 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ TR+LD++E+ +Y RLDG R ++ +N V ++S +AG
Sbjct: 502 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAG 561
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VIL D WNP + QA+DRAHRIGQT+ V V R +TVE+RI++ +
Sbjct: 562 GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 621
Query: 940 DKRKM 944
K ++
Sbjct: 622 MKLRL 626
Score = 86 (35.3 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K D + +LPPK V SK + +Y ++ +K
Sbjct: 381 ERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIYVGLSKMQREWYTRI---LMKDID 432
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 433 ILNSAGKMDK--MRLLNILMQLRKCCNHPYL 461
Score = 69 (29.3 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 54 (24.1 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLH 554
K W +V+DEA IKN +++++ + + P+ +N+LH
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL-QNNLH 344
Score = 54 (24.1 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 446 E 446
E
Sbjct: 292 E 292
Score = 44 (20.5 bits), Expect = 7.8e-21, Sum P(5) = 7.8e-21
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 171 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 212
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 230 (86.0 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ TR+LD++E+ +Y RLDG R ++ +N V ++S +AG
Sbjct: 503 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAG 562
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VIL D WNP + QA+DRAHRIGQT+ V V R +TVE+RI++ +
Sbjct: 563 GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 622
Query: 940 DKRKM 944
K ++
Sbjct: 623 MKLRL 627
Score = 86 (35.3 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K D + +LPPK V SK + +Y ++ +K
Sbjct: 382 ERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIYVGLSKMQREWYTRI---LMKDID 433
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 434 ILNSAGKMDK--MRLLNILMQLRKCCNHPYL 462
Score = 69 (29.3 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 54 (24.1 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLH 554
K W +V+DEA IKN +++++ + + P+ +N+LH
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL-QNNLH 345
Score = 54 (24.1 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 446 E 446
E
Sbjct: 293 E 293
Score = 44 (20.5 bits), Expect = 7.8e-21, Sum P(5) = 7.8e-21
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 172 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 213
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 222 (83.2 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 1090 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1149
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1150 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1209
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1210 AKYKLNVDQKVIQAGMF--DQKSSSHER 1235
Score = 86 (35.3 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 740 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 785
Score = 71 (30.1 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 958 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1012
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 1013 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1048
Score = 69 (29.3 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 799 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 858
Score = 57 (25.1 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 862 LAKIRWKYMIVDEGHRMKNHHCKLTQ 887
Score = 55 (24.4 bits), Expect = 3.1e-20, Sum P(5) = 3.1e-20
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G LA D TI + AL + QR L+
Sbjct: 350 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLR 409
Query: 325 SK 326
+
Sbjct: 410 QE 411
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 222 (83.2 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1218 AKYKLNVDQKVIQAGMF--DQKSSSHER 1243
Score = 86 (35.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 748 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 71 (30.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 966 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 69 (29.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 866
Score = 57 (25.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQ 895
Score = 56 (24.8 bits), Expect = 2.5e-20, Sum P(5) = 2.5e-20
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 252 AALEDLNQPKVEAT---LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
A L L+Q + T P GL V +L+ ++ L + + L L G LA D
Sbjct: 340 APLVPLHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTK 399
Query: 309 KTISIIAL--IQMQRSLQSK 326
TI + AL + QR L+ +
Sbjct: 400 ATIELKALRLLNFQRQLRQE 419
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 222 (83.2 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1218 AKYKLNVDQKVIQAGMF--DQKSSSHER 1243
Score = 86 (35.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 748 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 71 (30.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 966 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 69 (29.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 866
Score = 57 (25.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQ 895
Score = 55 (24.4 bits), Expect = 3.2e-20, Sum P(5) = 3.2e-20
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 252 AALEDLNQPKVEAT---LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
A L L+Q + T P GL V +L+ ++ L + + L L G LA D
Sbjct: 340 APLVPLHQKQSRITPIQKPRGLDPVEILQEREYRLQARIVHRIQELENLPGSLAGDLRTK 399
Query: 309 KTISIIAL--IQMQRSLQSK 326
TI + AL + QR L+ +
Sbjct: 400 ATIELKALRLLNFQRQLRQE 419
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 222 (83.2 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1218 AKYKLNVDQKVIQAGMF--DQKSSSHER 1243
Score = 86 (35.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 748 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 71 (30.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 966 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 69 (29.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 866
Score = 57 (25.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQ 895
Score = 56 (24.8 bits), Expect = 2.5e-20, Sum P(5) = 2.5e-20
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 252 AALEDLNQPKVEAT---LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
A L L+Q + T P GL V +L+ ++ L + + L L G LA D
Sbjct: 340 APLVPLHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTK 399
Query: 309 KTISIIAL--IQMQRSLQSK 326
TI + AL + QR L+ +
Sbjct: 400 ATIELKALRLLNFQRQLRQE 419
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 222 (83.2 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1218 AKYKLNVDQKVIQAGMF--DQKSSSHER 1243
Score = 86 (35.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 748 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 71 (30.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 966 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 69 (29.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 866
Score = 57 (25.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQ 895
Score = 55 (24.4 bits), Expect = 3.2e-20, Sum P(5) = 3.2e-20
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G LA D TI + AL + QR L+
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLR 417
Query: 325 SK 326
+
Sbjct: 418 QE 419
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 222 (83.2 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1218 AKYKLNVDQKVIQAGMF--DQKSSSHER 1243
Score = 86 (35.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 748 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 71 (30.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 966 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 69 (29.3 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 866
Score = 57 (25.1 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQ 895
Score = 56 (24.8 bits), Expect = 2.6e-20, Sum P(5) = 2.6e-20
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 252 AALEDLNQPKVEAT---LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
A L L+Q + T P GL V +L+ ++ L + + L L G LA D
Sbjct: 340 APLVPLHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTK 399
Query: 309 KTISIIAL--IQMQRSLQSK 326
TI + AL + QR L+ +
Sbjct: 400 ATIELKALRLLNFQRQLRQE 419
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 252 (93.8 bits), Expect = 2.7e-23, Sum P(5) = 2.7e-23
Identities = 61/176 (34%), Positives = 91/176 (51%)
Query: 798 DLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH---CIQYRRLDGTMSLP 854
D NG S+ + + ++F Q MLD+VE+ L + + Y RLDG++
Sbjct: 1619 DCGLGNGGSSESGTEAVVAQHRILIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAG 1678
Query: 855 ARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 914
R V FN D I V+L++ G LGLN+ A V+ ++ WNP + QA+DRAHRIG
Sbjct: 1679 QRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1738
Query: 915 QTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
Q R V V RL R T+E++I+ LQ K + + ++ + + E L LF
Sbjct: 1739 QKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENA--SLQSMGTEQLLDLF 1792
Score = 78 (32.5 bits), Expect = 2.7e-23, Sum P(5) = 2.7e-23
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
+ L K+Q+ + W+ LH GIL DD GLGKT+ I ++ L+++
Sbjct: 1255 IKAELRKYQQDGVNWLAFLNKYKLH---GILCDDMGLGKTLQSICILAGDHCLRAQ 1307
Score = 75 (31.5 bits), Expect = 2.7e-23, Sum P(5) = 2.7e-23
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYDVVLTTYSIVT 444
+LVVCP ++ W E+ K K L+ L Y G R + ++ ++++++ +Y +V
Sbjct: 1322 SLVVCPPTLTGHWVDEV-GKFCSKEYLNPLHYTGPPTERARLQYQVKRHNLIVASYDVVR 1380
Query: 445 NEV 447
N++
Sbjct: 1381 NDI 1383
Score = 56 (24.8 bits), Expect = 2.7e-23, Sum P(5) = 2.7e-23
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSLHGYKKLQAVLRAIMLRRTKG 573
+LDE IKN +T++++A L A I PI N L + ++ + +
Sbjct: 1395 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1454
Query: 574 TFIDGQPII 582
G+PI+
Sbjct: 1455 AARYGKPIL 1463
Score = 45 (20.9 bits), Expect = 2.7e-23, Sum P(5) = 2.7e-23
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 630 NILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMA 664
++ L LR+ C+HP LV +I+ ++A
Sbjct: 1561 HVFQALQYLRKLCNHPALVLTTQHPEYKRITEQLA 1595
Score = 43 (20.2 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 449 KQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
KQ S D EA+EK+ + S++ +KR+K+
Sbjct: 220 KQRSRDAVEANEKSND----STDGEPEEKRRKV 248
Score = 40 (19.1 bits), Expect = 5.6e-15, Sum P(3) = 5.6e-15
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 712 EYITGDDNMC--PAPRCKEQLGADVVFSKT--TLKNCVSDDGGGSPT 754
EYI G D++ PA R + A ++ +K L C+ D G + T
Sbjct: 648 EYIAGADSIAEDPATRDYVVMRARMMAAKLLGALCCCICDPGVNTVT 694
Score = 39 (18.8 bits), Expect = 7.1e-15, Sum P(3) = 7.1e-15
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 637 RLRQA-CDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPED 695
+LRQ + +++EY I+ + A R M +++ + CC+C DP +
Sbjct: 634 KLRQGQTQNKEVIQEY-IAGADSIAEDPATRDYVVMRARMMAAKLLGALCCCIC-DPGVN 691
Query: 696 SV 697
+V
Sbjct: 692 TV 693
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 222 (83.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 61/160 (38%), Positives = 85/160 (53%)
Query: 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDREITVM 872
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F D + V
Sbjct: 796 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVF 855
Query: 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE- 931
L+ +AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 856 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 915
Query: 932 ---DRI-LKLQDDKRKMV-ASAFGEDQGGGTASRLTVEDL 966
D+ LKL DK + + G G S++ VEDL
Sbjct: 916 EMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDL 955
Score = 117 (46.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
KKLQ++L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 669 KKLQSILKPMMLRRLKD---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 719
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G N N++ ++ LR+ C+HP L+
Sbjct: 720 SFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
Score = 63 (27.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 458 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 58 (25.5 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L K+ W V++DEA +KN ++
Sbjct: 584 CPELKKIHWSCVIIDEAHRLKNRNCKL 610
Score = 57 (25.1 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVV 436
L++ P S + W RE ++ ++YHG ++ ++ +Y++V
Sbjct: 513 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQ--QYEMV 555
Score = 48 (22.0 bits), Expect = 1.1e-05, Sum P(5) = 1.1e-05
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 778 LDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPI 814
+D++ + E + I+E+H+ G SA H + P+
Sbjct: 2298 MDLIFLK-EQTLQAGILEVHEDPGQAPPSASHPEGPV 2333
Score = 44 (20.5 bits), Expect = 2.6e-05, Sum P(5) = 2.6e-05
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 848 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLG 882
DGT +P R K+ NT+ ++ + +++ + G
Sbjct: 1328 DGTSDIPERGNMDKEDNTEDKLDGLQKQMESSSDG 1362
Score = 42 (19.8 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS--LKKFKAF 618
++ I+ +T G+P +L + + +WA ++LE D +K K F
Sbjct: 293 IIEKILASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRF 351
Score = 37 (18.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 732 ADVVFS-KTTLKNCVSDDGGG 751
A+ +F K T N + D GGG
Sbjct: 68 AETLFPRKMTSHNGMEDSGGG 88
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 222 (83.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 61/160 (38%), Positives = 85/160 (53%)
Query: 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDREITVM 872
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F D + V
Sbjct: 796 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVF 855
Query: 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE- 931
L+ +AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 856 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 915
Query: 932 ---DRI-LKLQDDKRKMV-ASAFGEDQGGGTASRLTVEDL 966
D+ LKL DK + + G G S++ VEDL
Sbjct: 916 EMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDL 955
Score = 117 (46.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
KKLQ++L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 669 KKLQSILKPMMLRRLKD---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 719
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G N N++ ++ LR+ C+HP L+
Sbjct: 720 SFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
Score = 63 (27.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 458 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 58 (25.5 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L K+ W V++DEA +KN ++
Sbjct: 584 CPELKKIHWSCVIIDEAHRLKNRNCKL 610
Score = 57 (25.1 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVV 436
L++ P S + W RE ++ ++YHG ++ ++ +Y++V
Sbjct: 513 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQ--QYEMV 555
Score = 48 (22.0 bits), Expect = 1.1e-05, Sum P(5) = 1.1e-05
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 778 LDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPI 814
+D++ + E + I+E+H+ G SA H + P+
Sbjct: 2298 MDLIFLK-EQTLQAGILEVHEDPGQAPPSASHPEGPV 2333
Score = 44 (20.5 bits), Expect = 2.6e-05, Sum P(5) = 2.6e-05
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 848 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLG 882
DGT +P R K+ NT+ ++ + +++ + G
Sbjct: 1328 DGTSDIPERGNMDKEDNTEDKLDGLQKQMESSSDG 1362
Score = 42 (19.8 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS--LKKFKAF 618
++ I+ +T G+P +L + + +WA ++LE D +K K F
Sbjct: 293 IIEKILASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRF 351
Score = 37 (18.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 732 ADVVFS-KTTLKNCVSDDGGG 751
A+ +F K T N + D GGG
Sbjct: 68 AETLFPRKMTSHNGMEDSGGG 88
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 222 (83.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1218 AKYKLNVDQKVIQAGMF--DQKSSSHER 1243
Score = 86 (35.3 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 748 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 71 (30.1 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 966 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 69 (29.3 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 866
Score = 57 (25.1 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQ 895
Score = 55 (24.4 bits), Expect = 3.6e-20, Sum P(5) = 3.6e-20
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G LA D TI + AL + QR L+
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLR 417
Query: 325 SK 326
+
Sbjct: 418 QE 419
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 242 (90.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 56/156 (35%), Positives = 95/156 (60%)
Query: 819 KSIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMS-LPARDRAVKDFNTDREITVMLMSL 876
+++VFSQ ++L+++E L N+H + R+DGT++ L R++ ++ F ++E +V L++
Sbjct: 481 QTLVFSQSIKILNIIERLLKNKH-FKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTT 539
Query: 877 KAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936
+ G +GL + AA+ V++ D WNP T+ QAVDR +RIGQ V V RL TVE++I +
Sbjct: 540 QVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYR 599
Query: 937 LQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972
Q K ++ GE + T ++L+ LF V
Sbjct: 600 RQVFKDSLIRQTTGEKKN--PFRYFTKQELKELFTV 633
Score = 97 (39.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 275 LLKHQK--IALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +HQK IA + L K+ R GGILADD GLGKT+ IIA +
Sbjct: 97 LFEHQKEGIAFLYSLYKDGRK----GGILADDMGLGKTVQIIAFL 137
Score = 67 (28.6 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD----VVLTTYSIV 443
L++ P +++ W E P + V +HG S+++ L + VV+TTY ++
Sbjct: 150 LLIMPTNLINTWVNEFAKWTP---GMRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQML 206
Query: 444 TN 445
N
Sbjct: 207 LN 208
Score = 47 (21.6 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRN 551
W V+LDEA IK+ T+ A ++ A + P+ N
Sbjct: 223 WDYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNN 264
Score = 43 (20.2 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 601 WAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
W L+ + +KF + + + L L L++ CDHP L+
Sbjct: 371 WIRLLPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 418
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 217 (81.4 bits), Expect = 3.1e-23, Sum P(5) = 3.1e-23
Identities = 52/137 (37%), Positives = 79/137 (57%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARD------------RAVKDFNTDRE 868
++FSQ TR+LD++E+ +Y RLDG R+ A++ FN
Sbjct: 506 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNS 565
Query: 869 IT-VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927
+ ++S +AG LG+N+ +A VIL D WNP + QA+DRAHRIGQ +PV V RL
Sbjct: 566 SKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITD 625
Query: 928 DTVEDRILKLQDDKRKM 944
+TVE+RI++ + K ++
Sbjct: 626 NTVEERIVERAEIKLRL 642
Score = 87 (35.7 bits), Expect = 3.1e-23, Sum P(5) = 3.1e-23
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L AVL+ +LRR K T ++ +LPPK + SK + +Y K+ +K
Sbjct: 385 ERLHAVLKPFLLRRIK-TDVEK----SLPPKKEIKIYLGLSKMQREWYTKI---LMKDID 436
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
+G +++ +L +L++LR+ C+HP L
Sbjct: 437 VLNSSGKMDK--MRLLNILMQLRKCCNHPYL 465
Score = 70 (29.7 bits), Expect = 3.1e-23, Sum P(5) = 3.1e-23
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 183 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 222
Score = 63 (27.2 bits), Expect = 3.1e-23, Sum P(5) = 3.1e-23
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 236 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 292
Query: 443 VTNE 446
V E
Sbjct: 293 VIKE 296
Score = 56 (24.8 bits), Expect = 3.1e-23, Sum P(5) = 3.1e-23
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPIS----RNSLHGYKKLQAVLR 564
K W +V+DEA IKN +++++ +R +ST ++ ++ +N+LH +L A+L
Sbjct: 302 KFHWRYLVIDEAHRIKNEKSKLSEI---VREFKSTNRLLLTGTPLQNNLH---ELWALLN 355
Query: 565 AIM 567
++
Sbjct: 356 FLL 358
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 222 (83.2 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 57/148 (38%), Positives = 81/148 (54%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLK 877
K ++F Q T ++ ++E+ +Y RLDGT R +K FN E + L+S +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL-- 935
AG LGLN+ +A VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 936 ---KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1218 AKYKLNVDQKVIQAGMF--DQKSSSHER 1243
Score = 86 (35.3 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 748 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 793
Score = 71 (30.1 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 21/96 (21%), Positives = 43/96 (44%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 966 RRLHKVLRPFLLRRLKKE-VEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 652
++ +++LR+ C+HP + + +
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 69 (29.3 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 866
Score = 57 (25.1 bits), Expect = 3.2e-23, Sum P(5) = 3.2e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 870 LAKIRWKYMIVDEGHRMKNHHCKLTQ 895
Score = 55 (24.4 bits), Expect = 4.0e-20, Sum P(5) = 4.0e-20
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G LA D TI + AL + QR L+
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLR 417
Query: 325 SK 326
+
Sbjct: 418 QE 419
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 236 (88.1 bits), Expect = 3.3e-23, Sum P(6) = 3.3e-23
Identities = 51/155 (32%), Positives = 91/155 (58%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS-LPARDRAVKDFNTDREITVMLMSLK 877
+++VFSQ ++L+++E L + R+DGT++ L R++ + F +++ +V L++ +
Sbjct: 502 QTLVFSQSRQILNIIERLLKNRHFKILRVDGTVTHLVEREKRIHLFQQNKDYSVFLLTTQ 561
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
G +GL + AA+ V++ D WNP T+ QAVDR +RIGQ + V RL TVE++I +
Sbjct: 562 VGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENIVVYRLITCGTVEEKIYRR 621
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972
Q K ++ G+ + T ++LR LF +
Sbjct: 622 QVFKDSLIRQTTGDKKN--PFRYFTKQELRELFTI 654
Score = 93 (37.8 bits), Expect = 3.3e-23, Sum P(6) = 3.3e-23
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 275 LLKHQK--IALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +HQK +A + L ++ R GGILADD GLGKT+ IIA +
Sbjct: 118 LFEHQKEGVAFLYSLYRDGRK----GGILADDMGLGKTVQIIAFL 158
Score = 68 (29.0 bits), Expect = 3.3e-23, Sum P(6) = 3.3e-23
Identities = 18/74 (24%), Positives = 39/74 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS---RTKDPVELAKYD-VVLTTYSIV 443
L++ P +++ W +E P + V +HG S RT++ + + + V++TTY ++
Sbjct: 171 LLIMPTNLISTWIKEFVKWTP---GMRVKTFHGSSKDERTRNLNRIQQRNGVIITTYQML 227
Query: 444 TNEVPKQPSVDEEE 457
N + S++ +E
Sbjct: 228 INNWQQLSSLNGQE 241
Score = 51 (23.0 bits), Expect = 3.3e-23, Sum P(6) = 3.3e-23
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI---PISRN 551
W V+LDEA IK T+ A C R+ I + PI N
Sbjct: 244 WDYVILDEAHKIKTSSTKSA-ICARAVPARNRILLTGTPIQNN 285
Score = 48 (22.0 bits), Expect = 3.3e-23, Sum P(6) = 3.3e-23
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 577 DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLL 636
DG I +P SL++ + W + L+ + +KF + + + L L
Sbjct: 373 DGDAICKMP----SLSRKN-DLIIWIRLRPLQEEIYRKFVSLDHIKELLMETRSPLAELG 427
Query: 637 RLRQACDHPLLV 648
L++ CDHP L+
Sbjct: 428 VLKKLCDHPRLL 439
Score = 40 (19.1 bits), Expect = 3.3e-23, Sum P(6) = 3.3e-23
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 235 GSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLK 277
GS + A+ ++ +YQ +++ + L + NL K
Sbjct: 28 GSVEAAALSPEQAALYQRYVKEAKEATKNGDLEEAFKLFNLAK 70
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 217 (81.4 bits), Expect = 3.5e-23, Sum P(5) = 3.5e-23
Identities = 52/137 (37%), Positives = 79/137 (57%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDR------------AVKDFNTDRE 868
++FSQ TR+LD++E+ +Y RLDG R+ A++ FN
Sbjct: 486 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAIEAFNAPNS 545
Query: 869 IT-VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927
+ ++S +AG LG+N+ +A VIL D WNP + QA+DRAHRIGQ +PV V RL
Sbjct: 546 SKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITD 605
Query: 928 DTVEDRILKLQDDKRKM 944
+TVE+RI++ + K ++
Sbjct: 606 NTVEERIVERAEIKLRL 622
Score = 87 (35.7 bits), Expect = 3.5e-23, Sum P(5) = 3.5e-23
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L AVL+ +LRR K T ++ +LPPK + SK + +Y K+ +K
Sbjct: 365 ERLHAVLKPFLLRRIK-TDVEK----SLPPKKEIKIYLGLSKMQREWYTKI---LMKDID 416
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
+G +++ +L +L++LR+ C+HP L
Sbjct: 417 VLNSSGKMDK--MRLLNILMQLRKCCNHPYL 445
Score = 70 (29.7 bits), Expect = 3.5e-23, Sum P(5) = 3.5e-23
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 163 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 202
Score = 62 (26.9 bits), Expect = 3.5e-23, Sum P(5) = 3.5e-23
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G + D + ++DV +T+Y +
Sbjct: 216 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEM 272
Query: 443 VTNE 446
V E
Sbjct: 273 VIKE 276
Score = 56 (24.8 bits), Expect = 3.5e-23, Sum P(5) = 3.5e-23
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPIS----RNSLHGYKKLQAVLR 564
K W +V+DEA IKN +++++ +R +ST ++ ++ +N+LH +L A+L
Sbjct: 282 KFHWRYLVIDEAHRIKNEKSKLSEI---VREFKSTNRLLLTGTPLQNNLH---ELWALLN 335
Query: 565 AIM 567
++
Sbjct: 336 FLL 338
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 227 (85.0 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 50/129 (38%), Positives = 80/129 (62%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875
G + ++FSQ T+MLD++++ ++ Y R+DG++ R A+K+F + I V L+S
Sbjct: 362 GGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-QQPIFVFLLS 420
Query: 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935
+AG +G+N+ AA VI +D +NP + QA RAHRIGQ + V V RL RDTVE+ +
Sbjct: 421 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 480
Query: 936 KLQDDKRKM 944
+ K ++
Sbjct: 481 RKAASKLQL 489
Score = 84 (34.6 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGG-ILADDQGLGKTISIIAL 316
GL ++L +Q + W+ Q+ HC G IL D+ GLGKT IAL
Sbjct: 40 GLTGIHLRSYQLEGVNWLAQR----FHCQNGCILGDEMGLGKTCQTIAL 84
Score = 78 (32.5 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
L++CP SVL W E++ P LS + Y G + D + +++ V+LTTY I
Sbjct: 99 LILCPLSVLSNWKEEMQRFAP---GLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEI 155
Score = 58 (25.5 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 25/90 (27%), Positives = 38/90 (42%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L +L+ +LRR K + LP KT + S + +YK + +K A
Sbjct: 249 ELHKLLQPFLLRRVKA-----EVATELPKKTEVVIYHGMSALQKKYYKAI---LMKDLDA 300
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLL 647
F + NIL +LR+ DHP L
Sbjct: 301 FENETAKKVKLQNILS---QLRKCVDHPYL 327
Score = 45 (20.9 bits), Expect = 7.5e-22, Sum P(4) = 7.5e-22
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG-YKKLQAVLRAIML 568
W +V+DEA +KN + + + S + PI +NSL Y L V +
Sbjct: 168 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPI-QNSLQELYSLLSFVEPDLFS 226
Query: 569 RRTKGTFI 576
+ G FI
Sbjct: 227 KEEVGDFI 234
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 212 (79.7 bits), Expect = 3.6e-23, Sum P(5) = 3.6e-23
Identities = 56/146 (38%), Positives = 79/146 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T ++ ++E+ Y RLDGT R +K FN + + L+S +AG
Sbjct: 1044 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1103
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ AA VI+ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1104 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1163
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1164 YKLNVDQKVIQAGMF--DQKSSSHER 1187
Score = 92 (37.4 bits), Expect = 3.6e-23, Sum P(5) = 3.6e-23
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 270 LLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL LKH ++ L WM+ +L+ GILAD+ GLGKTI IALI
Sbjct: 692 LLINGTLKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 737
Score = 77 (32.2 bits), Expect = 3.6e-23, Sum P(5) = 3.6e-23
Identities = 39/163 (23%), Positives = 76/163 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 910 RRLHKVLRPFLLRRLKKE-VESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTD 964
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLLVK--EYDFD-----SVGKISG-EMAKRL 667
++ + A L+ +++LR+ C+HP + + E F S G I+G E+ +
Sbjct: 965 G-SEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRAS 1023
Query: 668 PRDMLID-LLSRLE-TSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ L+D +L +L T+ + C S++T+ F ++
Sbjct: 1024 GKFELLDRILPKLRATNHRVLLFCQ---MTSLMTIMEDYFAFR 1063
Score = 65 (27.9 bits), Expect = 3.6e-23, Sum P(5) = 3.6e-23
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L W E + P +S R+ P + K++V+LTTY + +
Sbjct: 751 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKD 810
Score = 57 (25.1 bits), Expect = 3.6e-23, Sum P(5) = 3.6e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 814 LAKIRWKYMIVDEGHRMKNHHCKLTQ 839
Score = 37 (18.1 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++P+K
Sbjct: 920 LLRRLKKEVESQLPEK 935
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 211 (79.3 bits), Expect = 3.9e-23, Sum P(5) = 3.9e-23
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T ++ ++E+ Y RLDGT R +K FN + + L+S +AG
Sbjct: 1077 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1136
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ AA V++ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1137 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1196
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1197 YKLNVDQKVIQAGMF--DQKSSSHER 1220
Score = 92 (37.4 bits), Expect = 3.9e-23, Sum P(5) = 3.9e-23
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 270 LLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL LKH ++ L WM+ +L+ GILAD+ GLGKTI IALI
Sbjct: 725 LLINGTLKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 770
Score = 77 (32.2 bits), Expect = 3.9e-23, Sum P(5) = 3.9e-23
Identities = 39/163 (23%), Positives = 76/163 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 943 RRLHKVLRPFLLRRLKKE-VESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTD 997
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLLVK--EYDFD-----SVGKISG-EMAKRL 667
++ + A L+ +++LR+ C+HP + + E F S G I+G E+ +
Sbjct: 998 G-SEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRAS 1056
Query: 668 PRDMLID-LLSRLE-TSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ L+D +L +L T+ + C S++T+ F ++
Sbjct: 1057 GKFELLDRILPKLRATNHRVLLFCQ---MTSLMTIMEDYFAFR 1096
Score = 65 (27.9 bits), Expect = 3.9e-23, Sum P(5) = 3.9e-23
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L W E + P +S R+ P + K++V+LTTY + +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKD 843
Score = 57 (25.1 bits), Expect = 3.9e-23, Sum P(5) = 3.9e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 847 LAKIRWKYMIVDEGHRMKNHHCKLTQ 872
Score = 53 (23.7 bits), Expect = 3.2e-19, Sum P(5) = 3.2e-19
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G L D T+ + AL + QR L+
Sbjct: 341 PQGLDPVEILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLR 400
Query: 325 SK 326
+
Sbjct: 401 QE 402
Score = 37 (18.1 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++P+K
Sbjct: 953 LLRRLKKEVESQLPEK 968
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 220 (82.5 bits), Expect = 4.5e-23, Sum P(5) = 4.5e-23
Identities = 61/160 (38%), Positives = 85/160 (53%)
Query: 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTDREITVM 872
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F D + V
Sbjct: 796 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVF 855
Query: 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE- 931
L+ +AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 856 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYER 915
Query: 932 ---DRI-LKLQDDKRKMV-ASAFGEDQGGGTASRLTVEDL 966
D+ LKL DK + + G G S++ VEDL
Sbjct: 916 EMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 955
Score = 117 (46.2 bits), Expect = 4.5e-23, Sum P(5) = 4.5e-23
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
KKLQ++L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 669 KKLQSILKPMMLRRLKD---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 719
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G N N++ ++ LR+ C+HP L+
Sbjct: 720 SFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
Score = 63 (27.2 bits), Expect = 4.5e-23, Sum P(5) = 4.5e-23
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 458 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 58 (25.5 bits), Expect = 4.5e-23, Sum P(5) = 4.5e-23
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L K+ W V++DEA +KN ++
Sbjct: 584 CPELKKIHWSCVIIDEAHRLKNRNCKL 610
Score = 57 (25.1 bits), Expect = 4.5e-23, Sum P(5) = 4.5e-23
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVV 436
L++ P S + W RE ++ ++YHG ++ ++ +Y++V
Sbjct: 513 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQ--QYEMV 555
Score = 46 (21.3 bits), Expect = 1.7e-05, Sum P(5) = 1.7e-05
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 778 LDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKS 820
+D++ + E + I+E+H+ G S H + P GP S
Sbjct: 2298 MDLIFLK-EQTLQAGILEVHEDPGQATLSTTHPEGP--GPATS 2337
Score = 42 (19.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 562 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDS--LKKFKAF 618
++ I+ +T G+P +L + + +WA ++LE D +K K F
Sbjct: 293 IIEKILASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRF 351
Score = 39 (18.8 bits), Expect = 7.7e-05, Sum P(5) = 7.7e-05
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 848 DGTMSLPARDRAVKDFNTDREI 869
DGT +P R K+ N + ++
Sbjct: 1328 DGTSDIPERGNTDKEDNAEDKV 1349
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 211 (79.3 bits), Expect = 4.7e-23, Sum P(5) = 4.7e-23
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T ++ ++E+ Y RLDGT R +K FN + + L+S +AG
Sbjct: 1052 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1111
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ AA V++ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1112 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1171
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1172 YKLNVDQKVIQAGMF--DQKSSSHER 1195
Score = 92 (37.4 bits), Expect = 4.7e-23, Sum P(5) = 4.7e-23
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 270 LLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL LKH ++ L WM+ +L+ GILAD+ GLGKTI IALI
Sbjct: 700 LLINGTLKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 745
Score = 77 (32.2 bits), Expect = 4.7e-23, Sum P(5) = 4.7e-23
Identities = 39/163 (23%), Positives = 76/163 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 918 RRLHKVLRPFLLRRLKKE-VESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTD 972
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLLVK--EYDFD-----SVGKISG-EMAKRL 667
++ + A L+ +++LR+ C+HP + + E F S G I+G E+ +
Sbjct: 973 G-SEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRAS 1031
Query: 668 PRDMLID-LLSRLE-TSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ L+D +L +L T+ + C S++T+ F ++
Sbjct: 1032 GKFELLDRILPKLRATNHRVLLFCQ---MTSLMTIMEDYFAFR 1071
Score = 65 (27.9 bits), Expect = 4.7e-23, Sum P(5) = 4.7e-23
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L W E + P +S R+ P + K++V+LTTY + +
Sbjct: 759 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKD 818
Score = 57 (25.1 bits), Expect = 4.7e-23, Sum P(5) = 4.7e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 822 LAKIRWKYMIVDEGHRMKNHHCKLTQ 847
Score = 49 (22.3 bits), Expect = 9.5e-19, Sum P(5) = 9.5e-19
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +++ ++ L + + L L G L D T+ + AL + QR L+
Sbjct: 316 PQGLDPVEIMQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLR 375
Query: 325 SK 326
+
Sbjct: 376 QE 377
Score = 37 (18.1 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++P+K
Sbjct: 928 LLRRLKKEVESQLPEK 943
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 211 (79.3 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T ++ ++E+ Y RLDGT R +K FN + + L+S +AG
Sbjct: 1054 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1113
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ AA V++ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1114 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1173
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1174 YKLNVDQKVIQAGMF--DQKSSSHER 1197
Score = 92 (37.4 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 270 LLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL LKH ++ L WM+ +L+ GILAD+ GLGKTI IALI
Sbjct: 702 LLINGTLKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 747
Score = 77 (32.2 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 39/163 (23%), Positives = 76/163 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 920 RRLHKVLRPFLLRRLKKE-VESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTD 974
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLLVK--EYDFD-----SVGKISG-EMAKRL 667
++ + A L+ +++LR+ C+HP + + E F S G I+G E+ +
Sbjct: 975 G-SEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRAS 1033
Query: 668 PRDMLID-LLSRLE-TSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ L+D +L +L T+ + C S++T+ F ++
Sbjct: 1034 GKFELLDRILPKLRATNHRVLLFCQ---MTSLMTIMEDYFAFR 1073
Score = 65 (27.9 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L W E + P +S R+ P + K++V+LTTY + +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKD 820
Score = 57 (25.1 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 824 LAKIRWKYMIVDEGHRMKNHHCKLTQ 849
Score = 51 (23.0 bits), Expect = 6.0e-19, Sum P(5) = 6.0e-19
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G L D T+ + AL + QR L+
Sbjct: 318 PQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLR 377
Query: 325 SK 326
+
Sbjct: 378 QE 379
Score = 37 (18.1 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++P+K
Sbjct: 930 LLRRLKKEVESQLPEK 945
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 211 (79.3 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T ++ ++E+ Y RLDGT R +K FN + + L+S +AG
Sbjct: 1054 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1113
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ AA V++ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1114 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1173
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1174 YKLNVDQKVIQAGMF--DQKSSSHER 1197
Score = 92 (37.4 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 270 LLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL LKH ++ L WM+ +L+ GILAD+ GLGKTI IALI
Sbjct: 702 LLINGTLKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 747
Score = 77 (32.2 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 39/163 (23%), Positives = 76/163 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 920 RRLHKVLRPFLLRRLKKE-VESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTD 974
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLLVK--EYDFD-----SVGKISG-EMAKRL 667
++ + A L+ +++LR+ C+HP + + E F S G I+G E+ +
Sbjct: 975 G-SEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRAS 1033
Query: 668 PRDMLID-LLSRLE-TSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ L+D +L +L T+ + C S++T+ F ++
Sbjct: 1034 GKFELLDRILPKLRATNHRVLLFCQ---MTSLMTIMEDYFAFR 1073
Score = 65 (27.9 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L W E + P +S R+ P + K++V+LTTY + +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKD 820
Score = 57 (25.1 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 824 LAKIRWKYMIVDEGHRMKNHHCKLTQ 849
Score = 51 (23.0 bits), Expect = 6.0e-19, Sum P(5) = 6.0e-19
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G L D T+ + AL + QR L+
Sbjct: 317 PQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLR 376
Query: 325 SK 326
+
Sbjct: 377 QE 378
Score = 37 (18.1 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++P+K
Sbjct: 930 LLRRLKKEVESQLPEK 945
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 254 (94.5 bits), Expect = 4.8e-23, Sum P(4) = 4.8e-23
Identities = 59/158 (37%), Positives = 86/158 (54%)
Query: 798 DLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHC--IQYRRLDGTMSLP 854
D NGS++ I + ++F Q MLD+VE+ L H + Y RLDG++
Sbjct: 1626 DCGLGNGSTSESGTESIVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPG 1685
Query: 855 ARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 914
R V FN D I V+L++ G LGLN+ A V+ ++ WNP + QA+DRAHRIG
Sbjct: 1686 QRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1745
Query: 915 QTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGED 952
Q R V V RL R T+E++I+ LQ K + + ++
Sbjct: 1746 QKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQE 1783
Score = 80 (33.2 bits), Expect = 4.8e-23, Sum P(4) = 4.8e-23
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 246 ERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQ 305
ER + L+ E +P ++ L K+Q+ + W+ LH GIL DD
Sbjct: 1241 ERHFLEQLLDGKKLENYEIPVP---INAELRKYQQDGVNWLAFLNKYKLH---GILCDDM 1294
Query: 306 GLGKTISIIALI 317
GLGKT+ I ++
Sbjct: 1295 GLGKTLQSICIL 1306
Score = 70 (29.7 bits), Expect = 4.8e-23, Sum P(4) = 4.8e-23
Identities = 16/63 (25%), Positives = 35/63 (55%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYDVVLTTYSIVT 444
+LVVCP ++ W E+ K + L+ L Y G R + ++ ++++++ +Y +V
Sbjct: 1330 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERVRLQHQVKRHNLIVASYDVVR 1388
Query: 445 NEV 447
N++
Sbjct: 1389 NDI 1391
Score = 56 (24.8 bits), Expect = 4.8e-23, Sum P(4) = 4.8e-23
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSLHGYKKLQAVLRAIMLRRTKG 573
+LDE IKN +T++++A L A I PI N L + ++ + +
Sbjct: 1403 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1462
Query: 574 TFIDGQPII 582
G+PI+
Sbjct: 1463 AARYGKPIL 1471
Score = 46 (21.3 bits), Expect = 5.0e-22, Sum P(4) = 5.0e-22
Identities = 30/112 (26%), Positives = 46/112 (41%)
Query: 549 SRNSLHGYKKLQAVLRAIM---LRRTKGTFIDGQP--IIN-----LPPKTISLTKVDFSK 598
SR G + A+ R ++ LRR K + P II L P + L + DF+K
Sbjct: 1480 SREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYE-DFAK 1538
Query: 599 EEWAFYKKLESDSLKKFKAFADAGTVNQNYA--NILLMLLRLRQACDHPLLV 648
K + D A ++ + A ++ L LR+ C+HP LV
Sbjct: 1539 SR----AKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALV 1586
Score = 38 (18.4 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 237 ADERAVGGDERLIYQAAL-EDLNQPKVEAT 265
A RA + + AAL E+ +PK++AT
Sbjct: 1537 AKSRAKCDVDETVSSAALSEETEKPKLKAT 1566
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 211 (79.3 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T ++ ++E+ Y RLDGT R +K FN + + L+S +AG
Sbjct: 1054 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1113
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ AA V++ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1114 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1173
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1174 YKLNVDQKVIQAGMF--DQKSSSHER 1197
Score = 92 (37.4 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 270 LLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL LKH ++ L WM+ +L+ GILAD+ GLGKTI IALI
Sbjct: 702 LLINGTLKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 747
Score = 77 (32.2 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 39/163 (23%), Positives = 76/163 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 920 RRLHKVLRPFLLRRLKKE-VESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTD 974
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLLVK--EYDFD-----SVGKISG-EMAKRL 667
++ + A L+ +++LR+ C+HP + + E F S G I+G E+ +
Sbjct: 975 G-SEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRAS 1033
Query: 668 PRDMLID-LLSRLE-TSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ L+D +L +L T+ + C S++T+ F ++
Sbjct: 1034 GKFELLDRILPKLRATNHRVLLFCQ---MTSLMTIMEDYFAFR 1073
Score = 65 (27.9 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L W E + P +S R+ P + K++V+LTTY + +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKD 820
Score = 57 (25.1 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 824 LAKIRWKYMIVDEGHRMKNHHCKLTQ 849
Score = 51 (23.0 bits), Expect = 6.4e-19, Sum P(5) = 6.4e-19
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G L D T+ + AL + QR L+
Sbjct: 318 PQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLR 377
Query: 325 SK 326
+
Sbjct: 378 QE 379
Score = 37 (18.1 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++P+K
Sbjct: 930 LLRRLKKEVESQLPEK 945
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 213 (80.0 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 765 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 824
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 825 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 884
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA----SRLTVEDL 966
D+ LKL DK ++ S G D G T S+ +EDL
Sbjct: 885 FDKASLKLGLDKA-VLQSMSGRD-GNITGIQQFSKKEIEDL 923
Score = 118 (46.6 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 636 QKLQAILKPMMLRRLKE---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 686
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G + N N+L ++ LR+ C+HP L+
Sbjct: 687 SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 718
Score = 70 (29.7 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 428 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 468
Score = 56 (24.8 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 480 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 535
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 536 KFDALITTFEMILSDCPELREIE 558
Score = 53 (23.7 bits), Expect = 5.1e-23, Sum P(5) = 5.1e-23
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L ++ W V++DEA +KN ++
Sbjct: 551 CPELREIEWRCVIIDEAHRLKNRNCKL 577
Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 894 LDLWWNPTTEDQAVDRA---HRIGQT 916
L WW P D + R H + QT
Sbjct: 1537 LPKWWEPVRHDGELLRGAARHGVSQT 1562
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 211 (79.3 bits), Expect = 5.2e-23, Sum P(5) = 5.2e-23
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T ++ ++E+ Y RLDGT R +K FN + + L+S +AG
Sbjct: 1075 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1134
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ AA V++ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1135 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1194
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1195 YKLNVDQKVIQAGMF--DQKSSSHER 1218
Score = 92 (37.4 bits), Expect = 5.2e-23, Sum P(5) = 5.2e-23
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 270 LLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL LKH ++ L WM+ +L+ GILAD+ GLGKTI IALI
Sbjct: 723 LLINGTLKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 768
Score = 77 (32.2 bits), Expect = 5.2e-23, Sum P(5) = 5.2e-23
Identities = 39/163 (23%), Positives = 76/163 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 941 RRLHKVLRPFLLRRLKKE-VESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTD 995
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLLVK--EYDFD-----SVGKISG-EMAKRL 667
++ + A L+ +++LR+ C+HP + + E F S G I+G E+ +
Sbjct: 996 G-SEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRAS 1054
Query: 668 PRDMLID-LLSRLE-TSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ L+D +L +L T+ + C S++T+ F ++
Sbjct: 1055 GKFELLDRILPKLRATNHRVLLFCQ---MTSLMTIMEDYFAFR 1094
Score = 65 (27.9 bits), Expect = 5.2e-23, Sum P(5) = 5.2e-23
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L W E + P +S R+ P + K++V+LTTY + +
Sbjct: 782 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKD 841
Score = 57 (25.1 bits), Expect = 5.2e-23, Sum P(5) = 5.2e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 845 LAKIRWKYMIVDEGHRMKNHHCKLTQ 870
Score = 53 (23.7 bits), Expect = 4.1e-19, Sum P(5) = 4.1e-19
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G L D T+ + AL + QR L+
Sbjct: 339 PQGLDPVEILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLR 398
Query: 325 SK 326
+
Sbjct: 399 QE 400
Score = 37 (18.1 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++P+K
Sbjct: 951 LLRRLKKEVESQLPEK 966
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 249 (92.7 bits), Expect = 5.3e-23, Sum P(4) = 5.3e-23
Identities = 71/206 (34%), Positives = 109/206 (52%)
Query: 768 EYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWT 827
E +S++ ++ DI H +L+ ++ L GS G+S +++ + + ++F Q
Sbjct: 1608 EQLSTQHSSLRDIQHAP-KLSALKQLLLDCGL-GSAGASDSGTEAVV-AQHRVLIFCQLK 1664
Query: 828 RMLDLVENSLNQHC---IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLN 884
MLD+VE L + + Y RLDG++ R V FN D I V+L++ G LGLN
Sbjct: 1665 SMLDIVEQDLLKPQLPGVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLN 1724
Query: 885 MVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKM 944
+ A V+ ++ WNP + QA+DRAHRIGQ R V V RL R T+E++I+ LQ K KM
Sbjct: 1725 LTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQ--KFKM 1782
Query: 945 VASAFGEDQGGGTASRLTVEDLRYLF 970
+ Q + + E L LF
Sbjct: 1783 TIANTVISQENASLQSMGTEQLLNLF 1808
Score = 80 (33.2 bits), Expect = 5.3e-23, Sum P(4) = 5.3e-23
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKT 329
+ L K+Q+ + W+ LH GIL DD GLGKT+ I ++ L+++ T
Sbjct: 1272 IKAELRKYQQDGVNWLAFLNKYKLH---GILCDDMGLGKTLQSICILAGDHFLRAQEYT 1327
Score = 75 (31.5 bits), Expect = 5.3e-23, Sum P(4) = 5.3e-23
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYDVVLTTYSIVT 444
++VVCP ++ W E+ K K L+ L Y G R + ++ K+++++ +Y +V
Sbjct: 1339 SIVVCPPTLTGHWVDEV-GKFCSKEFLNPLHYTGPPTERARLQHQVKKHNLIVASYDVVR 1397
Query: 445 NEV 447
N+V
Sbjct: 1398 NDV 1400
Score = 56 (24.8 bits), Expect = 5.3e-23, Sum P(4) = 5.3e-23
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSLHGYKKLQAVLRAIMLRRTKG 573
+LDE IKN +T++++A L A I PI N L + ++ + +
Sbjct: 1412 ILDEGHVIKNGKTKLSKAIKQLTANYRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1471
Query: 574 TFIDGQPII 582
G+PI+
Sbjct: 1472 AARYGKPIL 1480
Score = 49 (22.3 bits), Expect = 2.7e-22, Sum P(4) = 2.7e-22
Identities = 30/111 (27%), Positives = 44/111 (39%)
Query: 549 SRNSLHGYKKLQAVLRAIM---LRRTKGTFIDGQP--II-----NLPPKTISLTKVDFSK 598
SR G ++A+ R ++ LRR K + P II NL P + L + DF+K
Sbjct: 1489 SREQEAGVLAMEALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQLYE-DFAK 1547
Query: 599 EEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLR-LRQACDHPLLV 648
K D + D + L+ LR+ C+HP LV
Sbjct: 1548 SR---AKVNVDDVISTASTQEDEEKPKLKATGHVFQALQYLRKLCNHPALV 1595
Score = 37 (18.1 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 237 ADERA-VGGDERLIYQAALEDLNQPKVEAT 265
A RA V D+ + + ED +PK++AT
Sbjct: 1546 AKSRAKVNVDDVISTASTQEDEEKPKLKAT 1575
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 211 (79.3 bits), Expect = 5.4e-23, Sum P(5) = 5.4e-23
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T ++ ++E+ Y RLDGT R +K FN + + L+S +AG
Sbjct: 1070 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1129
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ AA V++ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1130 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1189
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1190 YKLNVDQKVIQAGMF--DQKSSSHER 1213
Score = 92 (37.4 bits), Expect = 5.4e-23, Sum P(5) = 5.4e-23
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 270 LLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL LKH ++ L WM+ +L+ GILAD+ GLGKTI IALI
Sbjct: 718 LLINGTLKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 763
Score = 77 (32.2 bits), Expect = 5.4e-23, Sum P(5) = 5.4e-23
Identities = 39/163 (23%), Positives = 76/163 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 936 RRLHKVLRPFLLRRLKKE-VESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTD 990
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLLVK--EYDFD-----SVGKISG-EMAKRL 667
++ + A L+ +++LR+ C+HP + + E F S G I+G E+ +
Sbjct: 991 G-SEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRAS 1049
Query: 668 PRDMLID-LLSRLE-TSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ L+D +L +L T+ + C S++T+ F ++
Sbjct: 1050 GKFELLDRILPKLRATNHRVLLFCQ---MTSLMTIMEDYFAFR 1089
Score = 65 (27.9 bits), Expect = 5.4e-23, Sum P(5) = 5.4e-23
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L W E + P +S R+ P + K++V+LTTY + +
Sbjct: 777 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKD 836
Score = 57 (25.1 bits), Expect = 5.4e-23, Sum P(5) = 5.4e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 840 LAKIRWKYMIVDEGHRMKNHHCKLTQ 865
Score = 51 (23.0 bits), Expect = 6.8e-19, Sum P(5) = 6.8e-19
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G L D T+ + AL + QR L+
Sbjct: 334 PQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLR 393
Query: 325 SK 326
+
Sbjct: 394 QE 395
Score = 37 (18.1 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++P+K
Sbjct: 946 LLRRLKKEVESQLPEK 961
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 211 (79.3 bits), Expect = 5.5e-23, Sum P(5) = 5.5e-23
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++F Q T ++ ++E+ Y RLDGT R +K FN + + L+S +AG
Sbjct: 1077 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1136
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL---- 935
LGLN+ AA V++ D WNP + QA DRAHRIGQ V V RL ++VE++IL
Sbjct: 1137 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1196
Query: 936 -KLQDDKRKMVASAFGEDQGGGTASR 960
KL D++ + A F DQ + R
Sbjct: 1197 YKLNVDQKVIQAGMF--DQKSSSHER 1220
Score = 92 (37.4 bits), Expect = 5.5e-23, Sum P(5) = 5.5e-23
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 270 LLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL LKH ++ L WM+ +L+ GILAD+ GLGKTI IALI
Sbjct: 725 LLINGTLKHYQLQGLEWMVSLYNNNLN---GILADEMGLGKTIQTIALI 770
Score = 77 (32.2 bits), Expect = 5.5e-23, Sum P(5) = 5.5e-23
Identities = 39/163 (23%), Positives = 76/163 (46%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K ++ Q LP K + K D S + Y+ +++ +
Sbjct: 943 RRLHKVLRPFLLRRLKKE-VESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTD 997
Query: 617 AFADAGTVNQNYANILL-MLLRLRQACDHPLLVK--EYDFD-----SVGKISG-EMAKRL 667
++ + A L+ +++LR+ C+HP + + E F S G I+G E+ +
Sbjct: 998 G-SEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRAS 1056
Query: 668 PRDMLID-LLSRLE-TSSAICCVCSDPPEDSVVTMCGHVFCYQ 708
+ L+D +L +L T+ + C S++T+ F ++
Sbjct: 1057 GKFELLDRILPKLRATNHRVLLFCQ---MTSLMTIMEDYFAFR 1096
Score = 65 (27.9 bits), Expect = 5.5e-23, Sum P(5) = 5.5e-23
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L W E + P +S R+ P + K++V+LTTY + +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKD 843
Score = 57 (25.1 bits), Expect = 5.5e-23, Sum P(5) = 5.5e-23
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVAR 532
LAK+ W +++DE +KNH ++ +
Sbjct: 847 LAKIRWKYMIVDEGHRMKNHHCKLTQ 872
Score = 53 (23.7 bits), Expect = 4.4e-19, Sum P(5) = 4.4e-19
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL--IQMQRSLQ 324
P GL V +L+ ++ L + + L L G L D T+ + AL + QR L+
Sbjct: 341 PQGLDPVEILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLR 400
Query: 325 SK 326
+
Sbjct: 401 QE 402
Score = 37 (18.1 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 395 VLRQWARELEDKVPDK 410
+LR+ +E+E ++P+K
Sbjct: 953 LLRRLKKEVESQLPEK 968
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 217 (81.4 bits), Expect = 5.6e-23, Sum P(5) = 5.6e-23
Identities = 49/125 (39%), Positives = 72/125 (57%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM-SLKAG 879
++FSQ TR+LD++E+ Y RLDG R ++ FN + M S +AG
Sbjct: 486 LIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKFLFMLSTRAG 545
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ A VI+ D WNP + QA+DRAHRIGQ + V V R +TVE+RI++ +
Sbjct: 546 GLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVERAE 605
Query: 940 DKRKM 944
K ++
Sbjct: 606 MKLRL 610
Score = 88 (36.0 bits), Expect = 5.6e-23, Sum P(5) = 5.6e-23
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L VLR +LRR K D + + LP K I + V SK + +Y K+ +K
Sbjct: 365 ERLHTVLRPFLLRRIKA---DVEKSL-LPKKEIKIY-VGLSKMQREWYTKI---LMKDID 416
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
AG +++ +L +L++LR+ C+HP L
Sbjct: 417 ILNSAGKMDK--MRLLNVLMQLRKCCNHPYL 445
Score = 70 (29.7 bits), Expect = 5.6e-23, Sum P(5) = 5.6e-23
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P + + L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 155 PSYVKTGKLRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 202
Score = 60 (26.2 bits), Expect = 5.6e-23, Sum P(5) = 5.6e-23
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTYSIVT 444
+V+ P S L W E + VP A+ LI RT +D + ++DV +T+Y ++
Sbjct: 216 MVLVPKSTLYNWMNEFKRWVPSLKAVC-LIGDREERTAFIRDTLLPGEWDVCVTSYEMLI 274
Query: 445 NE 446
E
Sbjct: 275 IE 276
Score = 55 (24.4 bits), Expect = 5.6e-23, Sum P(5) = 5.6e-23
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHGYKKLQAVLRAI 566
K W +V+DEA IKN +++++ + + P+ +N+LH +L A+L +
Sbjct: 282 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL-QNNLH---ELWALLNFL 337
Query: 567 M 567
+
Sbjct: 338 L 338
Score = 48 (22.0 bits), Expect = 8.9e-21, Sum P(5) = 8.9e-21
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V + G +RDY V+ + I +YE N IL + GK++
Sbjct: 155 PSYVKT-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 196
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 225 (84.3 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN 880
++FSQ T+MLD++++ ++ Y R+DG++ R A+K+F + + V L+S +AG
Sbjct: 368 LLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-QQPVFVFLLSTRAGG 426
Query: 881 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDD 940
+G+N+ AA VI +D +NP + QA RAHRIGQ + V V RL RDTVE+ + +
Sbjct: 427 VGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAAS 486
Query: 941 KRKM 944
K ++
Sbjct: 487 KLQL 490
Score = 84 (34.6 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
L++CP SVL W E+E P LS ++Y G + D + +++ V+LTTY I
Sbjct: 101 LILCPLSVLSNWTEEMERFAP---GLSCVMYAGDKEERARLQQDLKQESRFHVLLTTYEI 157
Score = 81 (33.6 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGG-ILADDQGLGKTISIIAL 316
GL + L +Q + W+ R HC G IL D+ GLGKT IAL
Sbjct: 42 GLTGIRLRSYQLEGVNWL----ARCFHCQNGCILGDEMGLGKTCQTIAL 86
Score = 55 (24.4 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 24/90 (26%), Positives = 37/90 (41%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L +L+ +LRR K + LP KT + S + +YK + +K A
Sbjct: 251 ELHKLLQPFLLRRVKA-----EVATELPKKTEVVLYHGMSALQKKYYKAI---LMKDLDA 302
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLL 647
F N+L +LR+ DHP L
Sbjct: 303 FESEMAKKVKLQNVLS---QLRKCVDHPYL 329
Score = 44 (20.5 bits), Expect = 7.8e-22, Sum P(4) = 7.8e-22
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRNSLHG-YKKLQAVLRAIML 568
W +V+DEA +KN + + + S + PI +NSL Y L V +
Sbjct: 170 WSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPI-QNSLQELYSLLSFVEPDLFP 228
Query: 569 RRTKGTFI 576
+ G F+
Sbjct: 229 KEQVGDFV 236
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 247 (92.0 bits), Expect = 6.2e-23, Sum P(4) = 6.2e-23
Identities = 55/134 (41%), Positives = 81/134 (60%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FS T++LD+++ + YRRLDG+ R + VK+FN+ +++ + L+S A
Sbjct: 524 KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMA 583
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LGLN V A+ VIL D WNP + QAVDRA+RIGQ R V V RL TVE+ + Q
Sbjct: 584 GGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQ 643
Query: 939 DDKRKMVASAFGED 952
K+++ G +
Sbjct: 644 VYKQQLHCVVVGSE 657
Score = 66 (28.3 bits), Expect = 6.2e-23, Sum P(4) = 6.2e-23
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTE 338
G IL DD GLGKTI +I+ + L K E + N E
Sbjct: 142 GCILGDDMGLGKTIQVISFLAAV--LHKKGTREDIENNMPE 180
Score = 65 (27.9 bits), Expect = 6.2e-23, Sum P(4) = 6.2e-23
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA--KYDVVLTTY 440
L+V P SVL W EL+ V + HG + + + L K ++ LTTY
Sbjct: 199 LIVAPLSVLYNWKDELDTW----GYFRVTVLHGSKKDNELLRLKQRKCEIALTTY 249
Score = 58 (25.5 bits), Expect = 6.2e-23, Sum P(4) = 6.2e-23
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSL-HGYKKLQAVL 563
L + W +++DEA IKN + +V ++A + ++I ++ L + K+L V+
Sbjct: 259 LNSLEWSAIIVDEAHRIKNPKARVTEV---MKAVKCKVRIGLTGTVLQNNMKELWCVM 313
Score = 45 (20.9 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 718 DNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSP 753
D CP RC + + ++K+ ++ DG G P
Sbjct: 15 DRWCPGERCLAPSLDNKKLCEASIKS-ITVDGNGKP 49
Score = 39 (18.8 bits), Expect = 5.2e-21, Sum P(4) = 5.2e-21
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARAC 534
L KV +L A T K+ T + R C
Sbjct: 450 LQKVANHVALLQAASTSKHQETVIKRIC 477
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 241 (89.9 bits), Expect = 6.9e-23, Sum P(5) = 6.9e-23
Identities = 56/156 (35%), Positives = 95/156 (60%)
Query: 819 KSIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMS-LPARDRAVKDFNTDREITVMLMSL 876
+++VFSQ ++L+++E L N+H + R+DGT++ L R++ ++ F ++E +V L++
Sbjct: 480 QTLVFSQSRQILNIIERLLKNKH-FKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTT 538
Query: 877 KAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936
+ G +GL + AAS V++ D WNP T+ QAVDR +RIGQ V V RL TVE++I +
Sbjct: 539 QVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYR 598
Query: 937 LQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972
Q K ++ G+ + T ++L+ LF V
Sbjct: 599 RQVFKDSLIRQTTGDKKN--PFRYFTKQELKELFTV 632
Score = 95 (38.5 bits), Expect = 6.9e-23, Sum P(5) = 6.9e-23
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 275 LLKHQK--IALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +HQK IA + L K R GGILADD GLGKT+ IIA +
Sbjct: 96 LFEHQKEGIAFLYSLYKNGRK----GGILADDMGLGKTVQIIAFL 136
Score = 66 (28.3 bits), Expect = 6.9e-23, Sum P(5) = 6.9e-23
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD----VVLTTYSIV 443
L++ P +++ W +E P + V +HG S+ + L + VV+TTY ++
Sbjct: 149 LLIMPTNLINTWVKEFAKWTP---GMRVKTFHGSSKNERIRNLTRIQQRNGVVITTYQML 205
Query: 444 TN 445
N
Sbjct: 206 LN 207
Score = 47 (21.6 bits), Expect = 6.9e-23, Sum P(5) = 6.9e-23
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI--PISRN 551
W V+LDEA IK+ T+ A ++ A + PI N
Sbjct: 222 WDYVILDEAHKIKSASTKSAVCARAVPASNRLLLTGTPIQNN 263
Score = 43 (20.2 bits), Expect = 6.9e-23, Sum P(5) = 6.9e-23
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 601 WAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
W L+ + +KF + + + L L L++ CDHP L+
Sbjct: 370 WIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 417
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 213 (80.0 bits), Expect = 7.0e-23, Sum P(5) = 7.0e-23
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 1102 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1161
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 1162 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 1221
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA----SRLTVEDL 966
D+ LKL DK ++ S G D G T S+ +EDL
Sbjct: 1222 FDKASLKLGLDKA-VLQSMSGRD-GNITGIQQFSKKEIEDL 1260
Score = 120 (47.3 bits), Expect = 7.0e-23, Sum P(5) = 7.0e-23
Identities = 34/122 (27%), Positives = 62/122 (50%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 972 QKLQAILKPMMLRRLKE---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 1022
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL 676
+F G + N N+L ++ LR+ C+HP L+ + + E +P D + +
Sbjct: 1023 SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAM 1082
Query: 677 SR 678
R
Sbjct: 1083 VR 1084
Score = 70 (29.7 bits), Expect = 7.0e-23, Sum P(5) = 7.0e-23
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 764 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 804
Score = 56 (24.8 bits), Expect = 7.0e-23, Sum P(5) = 7.0e-23
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 816 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 871
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 872 KFDALITTFEMILSDCPELREIE 894
Score = 53 (23.7 bits), Expect = 7.0e-23, Sum P(5) = 7.0e-23
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L ++ W V++DEA +KN ++
Sbjct: 887 CPELREIEWRCVIIDEAHRLKNRNCKL 913
Score = 39 (18.8 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 579 QPIINLPPKTISLTKVDFSKE 599
QP++ P T L +V S+E
Sbjct: 107 QPVLQTPTPTSGLLQVSKSQE 127
Score = 39 (18.8 bits), Expect = 2.3e-05, Sum P(5) = 2.3e-05
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 894 LDLWWNPTTEDQAVDRA---HRIGQT 916
L WW P D + R H + QT
Sbjct: 1874 LPKWWEPIRHDGELLRGAARHGVSQT 1899
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 213 (80.0 bits), Expect = 7.5e-23, Sum P(5) = 7.5e-23
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 1149 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1208
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 1209 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 1268
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA----SRLTVEDL 966
D+ LKL DK ++ S G D G T S+ +EDL
Sbjct: 1269 FDKASLKLGLDKA-VLQSMSGRD-GNITGIQQFSKKEIEDL 1307
Score = 120 (47.3 bits), Expect = 7.5e-23, Sum P(5) = 7.5e-23
Identities = 34/122 (27%), Positives = 62/122 (50%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 1019 QKLQAILKPMMLRRLKE---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 1069
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL 676
+F G + N N+L ++ LR+ C+HP L+ + + E +P D + +
Sbjct: 1070 SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAM 1129
Query: 677 SR 678
R
Sbjct: 1130 VR 1131
Score = 70 (29.7 bits), Expect = 7.5e-23, Sum P(5) = 7.5e-23
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 851
Score = 56 (24.8 bits), Expect = 7.5e-23, Sum P(5) = 7.5e-23
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 863 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 918
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 919 KFDALITTFEMILSDCPELREIE 941
Score = 53 (23.7 bits), Expect = 7.5e-23, Sum P(5) = 7.5e-23
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L ++ W V++DEA +KN ++
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKL 960
Score = 40 (19.1 bits), Expect = 2.0e-05, Sum P(5) = 2.0e-05
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 894 LDLWWNPTTEDQAVDRA---HRIGQT 916
L WW P D + R H + QT
Sbjct: 1921 LPKWWEPVRHDGELLRGAARHGVSQT 1946
Score = 39 (18.8 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 579 QPIINLPPKTISLTKVDFSKE 599
QP++ P T L +V S+E
Sbjct: 107 QPVLQTPTPTSGLLQVSKSQE 127
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 213 (80.0 bits), Expect = 7.7e-23, Sum P(5) = 7.7e-23
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 1149 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1208
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 1209 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 1268
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA----SRLTVEDL 966
D+ LKL DK ++ S G D G T S+ +EDL
Sbjct: 1269 FDKASLKLGLDKA-VLQSMSGRD-GNITGIQQFSKKEIEDL 1307
Score = 120 (47.3 bits), Expect = 7.7e-23, Sum P(5) = 7.7e-23
Identities = 34/122 (27%), Positives = 62/122 (50%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 1019 QKLQAILKPMMLRRLKE---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 1069
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL 676
+F G + N N+L ++ LR+ C+HP L+ + + E +P D + +
Sbjct: 1070 SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAM 1129
Query: 677 SR 678
R
Sbjct: 1130 VR 1131
Score = 70 (29.7 bits), Expect = 7.7e-23, Sum P(5) = 7.7e-23
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 851
Score = 56 (24.8 bits), Expect = 7.7e-23, Sum P(5) = 7.7e-23
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 863 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 918
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 919 KFDALITTFEMILSDCPELREIE 941
Score = 53 (23.7 bits), Expect = 7.7e-23, Sum P(5) = 7.7e-23
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L ++ W V++DEA +KN ++
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKL 960
Score = 40 (19.1 bits), Expect = 2.0e-05, Sum P(5) = 2.0e-05
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 894 LDLWWNPTTEDQAVDRA---HRIGQT 916
L WW P D + R H + QT
Sbjct: 1923 LPKWWEPVRHDGELLRGAARHGVSQT 1948
Score = 39 (18.8 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 579 QPIINLPPKTISLTKVDFSKE 599
QP++ P T L +V S+E
Sbjct: 107 QPVLQTPTPTSGLLQVSKSQE 127
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 253 (94.1 bits), Expect = 8.5e-23, Sum P(4) = 8.5e-23
Identities = 58/158 (36%), Positives = 86/158 (54%)
Query: 798 DLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHC--IQYRRLDGTMSLP 854
D NGS++ + + ++F Q MLD+VE+ L H + Y RLDG++
Sbjct: 1625 DCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPG 1684
Query: 855 ARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 914
R V FN D I V+L++ G LGLN+ A V+ ++ WNP + QA+DRAHRIG
Sbjct: 1685 QRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1744
Query: 915 QTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGED 952
Q R V V RL R T+E++I+ LQ K + + ++
Sbjct: 1745 QKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQE 1782
Score = 77 (32.2 bits), Expect = 8.5e-23, Sum P(4) = 8.5e-23
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L K+Q+ + W+ LH GIL DD GLGKT+ I ++
Sbjct: 1262 INAELRKYQQDGVNWLAFLNKYKLH---GILCDDMGLGKTLQSICIL 1305
Score = 72 (30.4 bits), Expect = 8.5e-23, Sum P(4) = 8.5e-23
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYDVVLTTYSIVT 444
+LVVCP ++ W E+ K K L+ L Y G R + ++ ++++++ +Y +V
Sbjct: 1329 SLVVCPPTLTGHWVDEV-GKFCSKEYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 1387
Query: 445 NEV 447
N++
Sbjct: 1388 NDI 1390
Score = 56 (24.8 bits), Expect = 8.5e-23, Sum P(4) = 8.5e-23
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSLHGYKKLQAVLRAIMLRRTKG 573
+LDE IKN +T++++A L A I PI N L + ++ + +
Sbjct: 1402 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1461
Query: 574 TFIDGQPII 582
G+PI+
Sbjct: 1462 AARYGKPIL 1470
Score = 46 (21.3 bits), Expect = 8.8e-22, Sum P(4) = 8.8e-22
Identities = 30/112 (26%), Positives = 46/112 (41%)
Query: 549 SRNSLHGYKKLQAVLRAIM---LRRTKGTFIDGQP--IIN-----LPPKTISLTKVDFSK 598
SR G + A+ R ++ LRR K + P II L P + L + DF+K
Sbjct: 1479 SREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYE-DFAK 1537
Query: 599 EEWAFYKKLESDSLKKFKAFADAGTVNQNYA--NILLMLLRLRQACDHPLLV 648
K + D A ++ + A ++ L LR+ C+HP LV
Sbjct: 1538 SR----AKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALV 1585
Score = 38 (18.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 237 ADERAVGGDERLIYQAAL-EDLNQPKVEAT 265
A RA + + AAL E+ +PK++AT
Sbjct: 1536 AKSRAKCDVDETVSSAALSEETEKPKLKAT 1565
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 213 (80.0 bits), Expect = 8.6e-23, Sum P(6) = 8.6e-23
Identities = 57/159 (35%), Positives = 86/159 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 543 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLL 602
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V + RL R++ E
Sbjct: 603 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREM 662
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA--SRLTVEDL 966
D+ LKL DK + + + E+ G S+ +EDL
Sbjct: 663 FDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 701
Score = 118 (46.6 bits), Expect = 8.6e-23, Sum P(6) = 8.6e-23
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 414 QKLQAILKPMMLRRLKE---DVEK--NLAPKEETIIEVELTNIQKKYYRAI----LEKNF 464
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
AF G N N+L ++ LR+ C+HP L+
Sbjct: 465 AFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 496
Score = 63 (27.2 bits), Expect = 8.6e-23, Sum P(6) = 8.6e-23
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L + +C ILAD+ GLGKTI I +
Sbjct: 206 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 245
Score = 63 (27.2 bits), Expect = 8.6e-23, Sum P(6) = 8.6e-23
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 258 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 296
Score = 53 (23.7 bits), Expect = 8.6e-23, Sum P(6) = 8.6e-23
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L + W VV+DEA +KN ++
Sbjct: 329 CPELRNIPWRCVVIDEAHRLKNRNCKL 355
Score = 41 (19.5 bits), Expect = 8.6e-23, Sum P(6) = 8.6e-23
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 90 DHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTL 141
+ ++S+ +ADD+ + Q+ A+ EKI S +++K+ +
Sbjct: 2 EFKISDEEADDADAAGRDSPSNTSQSEQQESADAEGPVVEKIMSSRSVKKKM 53
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 244 (91.0 bits), Expect = 9.5e-23, Sum P(4) = 9.5e-23
Identities = 53/134 (39%), Positives = 81/134 (60%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878
K ++FS T++LD+++ + YRRLDG+ R + VK+FN+ +++ + L+S A
Sbjct: 537 KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMA 596
Query: 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938
G LGLN V A+ V+L D WNP + QA+DRA+RIGQ R V V RL TVE+ + Q
Sbjct: 597 GGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQ 656
Query: 939 DDKRKMVASAFGED 952
K+++ G +
Sbjct: 657 IYKQQLHCVVVGSE 670
Score = 68 (29.0 bits), Expect = 9.5e-23, Sum P(4) = 9.5e-23
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 294 LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTE 338
+H G IL DD GLGKT+ +I+ + L K E + N E
Sbjct: 150 IHGGGCILGDDMGLGKTVQVISFLAAV--LHKKGTREDIENNMPE 192
Score = 63 (27.2 bits), Expect = 9.5e-23, Sum P(4) = 9.5e-23
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA--KYDVVLTTY 440
L+V P SVL W EL+ V + HG + + + + K ++ LTTY
Sbjct: 212 LIVAPLSVLYNWKDELDTW----GYFRVTVLHGNRKDNELIRVKQRKCEIALTTY 262
Score = 60 (26.2 bits), Expect = 9.5e-23, Sum P(4) = 9.5e-23
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSL-HGYKKLQAVL 563
L + W V++DEA IKN + +V ++A + ++I ++ L + K+L V+
Sbjct: 272 LNSLEWSAVIVDEAHRIKNPKARVTEV---MKALKCNVRIGLTGTILQNNMKELWCVM 326
Score = 38 (18.4 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARAC 534
L KV +L A T K T + R C
Sbjct: 463 LQKVANHVALLQAASTSKQQETLIKRIC 490
Score = 38 (18.4 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 104 LSGNKNVGQLQTVNPRIANVASADYEKI 131
L GN+ +L V R +A YE +
Sbjct: 238 LHGNRKDNELIRVKQRKCEIALTTYETL 265
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 213 (80.0 bits), Expect = 9.6e-23, Sum P(5) = 9.6e-23
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 1148 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1207
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 1208 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 1267
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA----SRLTVEDL 966
D+ LKL DK ++ S G D G T S+ +EDL
Sbjct: 1268 FDKASLKLGLDKA-VLQSMSGRD-GNITGIQQFSKKEIEDL 1306
Score = 119 (46.9 bits), Expect = 9.6e-23, Sum P(5) = 9.6e-23
Identities = 34/122 (27%), Positives = 64/122 (52%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 1019 QKLQAILKPMMLRRLKE---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 1069
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL 676
+F G + N N+L ++ LR+ C+HP L+ + + + E +P+D + +
Sbjct: 1070 SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAE-EKILMEFREACHIIPQDFHLQAM 1128
Query: 677 SR 678
R
Sbjct: 1129 VR 1130
Score = 70 (29.7 bits), Expect = 9.6e-23, Sum P(5) = 9.6e-23
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 851
Score = 56 (24.8 bits), Expect = 9.6e-23, Sum P(5) = 9.6e-23
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 863 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 918
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 919 KFDALITTFEMILSDCPELREIE 941
Score = 53 (23.7 bits), Expect = 9.6e-23, Sum P(5) = 9.6e-23
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L ++ W V++DEA +KN ++
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKL 960
Score = 40 (19.1 bits), Expect = 2.5e-05, Sum P(5) = 2.5e-05
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 894 LDLWWNPTTEDQAVDRA---HRIGQT 916
L WW P D + R H + QT
Sbjct: 1920 LPKWWEPVRHDGELLRGAARHGVSQT 1945
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 213 (80.0 bits), Expect = 9.7e-23, Sum P(5) = 9.7e-23
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 1150 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1209
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 1210 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 1269
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA----SRLTVEDL 966
D+ LKL DK ++ S G D G T S+ +EDL
Sbjct: 1270 FDKASLKLGLDKA-VLQSMSGRD-GNITGIQQFSKKEIEDL 1308
Score = 119 (46.9 bits), Expect = 9.7e-23, Sum P(5) = 9.7e-23
Identities = 34/122 (27%), Positives = 64/122 (52%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 1021 QKLQAILKPMMLRRLKE---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 1071
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL 676
+F G + N N+L ++ LR+ C+HP L+ + + + E +P+D + +
Sbjct: 1072 SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAE-EKILMEFREACHIIPQDFHLQAM 1130
Query: 677 SR 678
R
Sbjct: 1131 VR 1132
Score = 70 (29.7 bits), Expect = 9.7e-23, Sum P(5) = 9.7e-23
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 813 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 853
Score = 56 (24.8 bits), Expect = 9.7e-23, Sum P(5) = 9.7e-23
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 865 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 920
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 921 KFDALITTFEMILSDCPELREIE 943
Score = 53 (23.7 bits), Expect = 9.7e-23, Sum P(5) = 9.7e-23
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L ++ W V++DEA +KN ++
Sbjct: 936 CPELREIEWRCVIIDEAHRLKNRNCKL 962
Score = 40 (19.1 bits), Expect = 2.5e-05, Sum P(5) = 2.5e-05
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 894 LDLWWNPTTEDQAVDRA---HRIGQT 916
L WW P D + R H + QT
Sbjct: 1922 LPKWWEPVRHDGELLRGAARHGVSQT 1947
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 248 (92.4 bits), Expect = 1.0e-22, Sum P(4) = 1.0e-22
Identities = 52/125 (41%), Positives = 79/125 (63%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAG 879
++FSQ TR+LD++E+ +Y RLDG R+ A++ FN + ++S +AG
Sbjct: 509 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAG 568
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ +A VIL D WNP + QA+DRAHRIGQ +PV V RL +TVE+RI++ +
Sbjct: 569 GLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAE 628
Query: 940 DKRKM 944
K ++
Sbjct: 629 IKLRL 633
Score = 103 (41.3 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 66/319 (20%), Positives = 133/319 (41%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
++L AVL+ +LRR K T ++ +LPPK + SK + +Y K+ +K
Sbjct: 388 ERLHAVLKPFLLRRIK-TDVEK----SLPPKKEIKIYLGLSKMQREWYTKI---LMKDID 439
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLID-L 675
AG +++ +L +L++LR+ C+HP L + + + +++D L
Sbjct: 440 VLNSAGKMDK--MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKL 497
Query: 676 LSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 735
L++L+ + + S ++ + +C EY D P +E + A V
Sbjct: 498 LAKLKEQGSRVLIFSQMTR--LLDILED-YCMWRGYEYCRLD-GQTPHEEREEAIEAFNV 553
Query: 736 FSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVE 795
+ + +S GG + AD + D+++ +D H + K +
Sbjct: 554 PNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAH---RIGQKKPVRV 610
Query: 796 IHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMSLP 854
+ + + ++ I+ + SIV Q R++D N + + +Q R T
Sbjct: 611 FRLITDNTVEERIVERAEIKLRLDSIVIQQG-RLIDQQSNKMAKEEMLQMIRHGATHVFA 669
Query: 855 ARDRAVKDFNTDREITVML 873
+++ + TD +IT +L
Sbjct: 670 SKESEL----TDEDITTLL 684
Score = 70 (29.7 bits), Expect = 1.0e-22, Sum P(4) = 1.0e-22
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 186 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 63 (27.2 bits), Expect = 1.0e-22, Sum P(4) = 1.0e-22
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 443 VTNE 446
V E
Sbjct: 296 VIKE 299
Score = 56 (24.8 bits), Expect = 1.0e-22, Sum P(4) = 1.0e-22
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPIS----RNSLHGYKKLQAVLR 564
K W +V+DEA IKN +++++ +R +ST ++ ++ +N+LH +L A+L
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEI---VREFKSTNRLLLTGTPLQNNLH---ELWALLN 358
Query: 565 AIM 567
++
Sbjct: 359 FLL 361
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 231 (86.4 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 50/135 (37%), Positives = 81/135 (60%)
Query: 811 KSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREI 869
K EG + ++FSQ +R+LD++E+ +Y R+DG+ S R A+ ++N D E
Sbjct: 464 KFKAEGS-RVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEK 522
Query: 870 TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929
+ L++ +AG LG+N+ +A VIL D WNP + QA+DRAHRIGQ + V V R
Sbjct: 523 FIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKA 582
Query: 930 VEDRILKLQDDKRKM 944
+E+++L+ K ++
Sbjct: 583 IEEKVLERAAQKLRL 597
Score = 83 (34.3 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG-----GSRTKDPVELAKYDVVLTTYSI 442
+V+ P S L W RE PD ++V++ G S KD + AK+DV++T++ +
Sbjct: 192 IVIVPKSTLDNWRREFAKWTPD---VNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEM 248
Query: 443 VTNE 446
+ E
Sbjct: 249 ILRE 252
Score = 75 (31.5 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 255 EDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQK-ETRSLHCLGGILADDQGLGKTISI 313
ED +Q V P + L ++Q L W++ E R L GILAD+ GLGKT+
Sbjct: 120 ED-HQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENR----LSGILADEMGLGKTLQT 174
Query: 314 IALIQMQRSLQ 324
I+ + R ++
Sbjct: 175 ISFLGYLRYIK 185
Score = 57 (25.1 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L +L +LRR K D + +L PK + + + + +YK+L K A
Sbjct: 351 ELHQLLSPFLLRRVKA---DVEK--SLLPKIETNVYIGMTDMQVEWYKRLLE---KDIDA 402
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLL 647
+ +L ++++LR+ C+HP L
Sbjct: 403 VNGVVGKREGKTRLLNIVMQLRKCCNHPYL 432
Score = 56 (24.8 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 44/189 (23%), Positives = 84/189 (44%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI---PISRNSLHGYKKLQAVL 563
L K W +V+DEA IKN + +++ L R+ + I P+ +N+LH +L A+L
Sbjct: 256 LQKFRWEYIVVDEAHRIKNEDSSLSKII-RLFYSRNRLLITGTPL-QNNLH---ELWALL 310
Query: 564 RAIM--LRRTKGTF---IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF 618
++ + F D Q L + + D + E ++ L L++ KA
Sbjct: 311 NFLLPDVFGDSDQFDEAFDNQNSEELDEEE-KQRRQDKAVSE--LHQLLSPFLLRRVKAD 367
Query: 619 ADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSR 678
+ + + N+ + + ++ LL K D D+V +G + KR + L++++ +
Sbjct: 368 VEKSLLPKIETNVYIGMTDMQVEWYKRLLEK--DIDAV---NGVVGKREGKTRLLNIVMQ 422
Query: 679 LETSSAICC 687
L CC
Sbjct: 423 LRK----CC 427
Score = 41 (19.5 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSK 598
K LQ + LR K IDG I+ +P T+ + +F+K
Sbjct: 170 KTLQTISFLGYLRYIK--HIDGPFIVIVPKSTLDNWRREFAK 209
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 231 (86.4 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 50/135 (37%), Positives = 81/135 (60%)
Query: 811 KSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREI 869
K EG + ++FSQ +R+LD++E+ +Y R+DG+ S R A+ ++N D E
Sbjct: 464 KFKAEGS-RVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEK 522
Query: 870 TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929
+ L++ +AG LG+N+ +A VIL D WNP + QA+DRAHRIGQ + V V R
Sbjct: 523 FIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKA 582
Query: 930 VEDRILKLQDDKRKM 944
+E+++L+ K ++
Sbjct: 583 IEEKVLERAAQKLRL 597
Score = 83 (34.3 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG-----GSRTKDPVELAKYDVVLTTYSI 442
+V+ P S L W RE PD ++V++ G S KD + AK+DV++T++ +
Sbjct: 192 IVIVPKSTLDNWRREFAKWTPD---VNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEM 248
Query: 443 VTNE 446
+ E
Sbjct: 249 ILRE 252
Score = 75 (31.5 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 255 EDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQK-ETRSLHCLGGILADDQGLGKTISI 313
ED +Q V P + L ++Q L W++ E R L GILAD+ GLGKT+
Sbjct: 120 ED-HQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENR----LSGILADEMGLGKTLQT 174
Query: 314 IALIQMQRSLQ 324
I+ + R ++
Sbjct: 175 ISFLGYLRYIK 185
Score = 57 (25.1 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 558 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 617
+L +L +LRR K D + +L PK + + + + +YK+L K A
Sbjct: 351 ELHQLLSPFLLRRVKA---DVEK--SLLPKIETNVYIGMTDMQVEWYKRLLE---KDIDA 402
Query: 618 FADAGTVNQNYANILLMLLRLRQACDHPLL 647
+ +L ++++LR+ C+HP L
Sbjct: 403 VNGVVGKREGKTRLLNIVMQLRKCCNHPYL 432
Score = 56 (24.8 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 44/189 (23%), Positives = 84/189 (44%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKI---PISRNSLHGYKKLQAVL 563
L K W +V+DEA IKN + +++ L R+ + I P+ +N+LH +L A+L
Sbjct: 256 LQKFRWEYIVVDEAHRIKNEDSSLSKII-RLFYSRNRLLITGTPL-QNNLH---ELWALL 310
Query: 564 RAIM--LRRTKGTF---IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF 618
++ + F D Q L + + D + E ++ L L++ KA
Sbjct: 311 NFLLPDVFGDSDQFDEAFDNQNSEELDEEE-KQRRQDKAVSE--LHQLLSPFLLRRVKAD 367
Query: 619 ADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSR 678
+ + + N+ + + ++ LL K D D+V +G + KR + L++++ +
Sbjct: 368 VEKSLLPKIETNVYIGMTDMQVEWYKRLLEK--DIDAV---NGVVGKREGKTRLLNIVMQ 422
Query: 679 LETSSAICC 687
L CC
Sbjct: 423 LRK----CC 427
Score = 41 (19.5 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSK 598
K LQ + LR K IDG I+ +P T+ + +F+K
Sbjct: 170 KTLQTISFLGYLRYIK--HIDGPFIVIVPKSTLDNWRREFAK 209
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 254 (94.5 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 58/153 (37%), Positives = 86/153 (56%)
Query: 821 IVFSQWTRMLDLVENSL-NQHC--IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 877
++F+Q MLD+VEN L +H + Y R+DG++ R V FN+D I V+L++
Sbjct: 1783 LIFAQMKSMLDIVENELFKKHLPSVTYLRMDGSVETMKRHSIVNQFNSDPTIDVLLLTTH 1842
Query: 878 AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937
G LGLN+ A VI L+ WNP + QA+DRAHRIGQ + V V RL T+E++I+ L
Sbjct: 1843 VGGLGLNLTGADTVIFLEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITSGTLEEKIMGL 1902
Query: 938 QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970
Q K + + D + ++ +L LF
Sbjct: 1903 QKFKLNIANTVINHDNS--SLQTMSTNELLNLF 1933
Score = 82 (33.9 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 243 GGDERLIYQAA-----LEDL-NQPKVEA-TLPDGLLSVNLLKHQKIALAWMLQKETRSLH 295
G D+ LI Q LE L + KVE LP + + L K+Q+ + W+ LH
Sbjct: 1339 GLDQDLIQQKQEERKFLEQLLDGSKVENYPLPIRI-NTELRKYQQDGVNWLAFLNKYKLH 1397
Query: 296 CLGGILADDQGLGKTISIIALI 317
GIL DD GLGKT+ I +I
Sbjct: 1398 ---GILCDDMGLGKTLQTICII 1416
Score = 69 (29.3 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYDVVLTTYSIVT 444
+LV+CP S++ W E++ D + + + Y G R + ++V++ +Y I+
Sbjct: 1440 SLVICPPSLVGHWFYEIKKFCSD-STMKPMTYMGNPSERQAQRSKFKDHNVLIMSYDIMR 1498
Query: 445 NEV 447
N++
Sbjct: 1499 NDI 1501
Score = 53 (23.7 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRSTIK--IPISRNSL 553
+LDE IKN +T++ +A L++ I PI N L
Sbjct: 1513 ILDEGHIIKNAKTKLTQAAKRLQSNHRLILSGTPIQNNVL 1552
Score = 51 (23.0 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 795 EIHDLAGSNGSSAVHSKSP--IEGPIKSIVFSQWTRMLDLVENSL 837
+I DL+ S S V P I G +S FSQW +L N+L
Sbjct: 662 DIVDLSLSTWESLVKIFKPNVIRGACRSY-FSQWVTLLSTPPNTL 705
Score = 44 (20.5 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 630 NILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDML 672
+I L LR+ C HP V + I E K P D+L
Sbjct: 1685 HIFQALQYLRKLCGHPSFVLNPEHPQYPSIMKEF-KLQPNDIL 1726
Score = 44 (20.5 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 773 KIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIE 815
K++ L + +L + S+VE D+ +N SA+ +K E
Sbjct: 189 KLKKQLGLDDLPIKLESMDSLVEDKDIVLNNSKSAIKAKKEKE 231
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 203 (76.5 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 49/143 (34%), Positives = 79/143 (55%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT------DREIT---- 870
++FSQ T LD++++ + Y RLDG++ R A+K+F+ D E+
Sbjct: 397 LLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNA 456
Query: 871 -VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929
V ++S +AG +GLN+VAA VI + WNP + QA+ RAHRIGQ V L +
Sbjct: 457 FVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHS 516
Query: 930 VEDRILKLQDDKRKMVASAFGED 952
VE+ IL+ + K ++ + G++
Sbjct: 517 VEEVILRRAERKLQLSHNVVGDN 539
Score = 115 (45.5 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 36/130 (27%), Positives = 62/130 (47%)
Query: 551 NSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESD 610
N YK L+ +L A MLRRTK I+ ++ LPP LT++ + KK+ +
Sbjct: 265 NDKETYKSLKFILGAFMLRRTKSLLIESGNLV-LPP----LTELTVMVPLVSLQKKIYTS 319
Query: 611 SLKK-FKAFADAGTVNQNYANILLMLLRLRQACDHPLL---VKEYDFDSVGKISGEMAKR 666
L+K + + N+ ++ ++++LR+AC HP L ++ F+ + K
Sbjct: 320 ILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEGEHLVQASGKL 379
Query: 667 LPRDMLIDLL 676
L D L+ L
Sbjct: 380 LVLDQLLKRL 389
Score = 65 (27.9 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 246 ERLIYQAALEDL--NQPKVEATLPDGL---LSVNLLKHQKIALAWMLQKETRSLHCLGGI 300
ER + +AA E + + K T PD ++ L HQ ++W++QK ++ + +
Sbjct: 18 ERRL-EAAAEIILEKEAKFSNTPPDCSEFGVTATLKPHQVEGVSWLIQKYLLGVNVV--L 74
Query: 301 LADDQGLGKTISIIALI 317
D GLGKT+ I+ +
Sbjct: 75 ELDQMGLGKTLQAISFL 91
Score = 60 (26.2 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 28/95 (29%), Positives = 42/95 (44%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--------DPVELAK------Y 433
LV+CP SV W E+ P+ L VL Y G + D V+ + +
Sbjct: 105 LVLCPLSVTDGWVSEINRFTPN---LEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPF 161
Query: 434 DVVLTTYSIVT------NEVPKQPSVDEEEADEKN 462
DV+LTTY I +++P Q ++ +E KN
Sbjct: 162 DVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKN 196
Score = 50 (22.7 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 507 LAKVGWFRVVLDEAQTIKN 525
L+++ W ++DEAQ +KN
Sbjct: 178 LSQIPWQYAIIDEAQRLKN 196
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 213 (80.0 bits), Expect = 1.2e-22, Sum P(5) = 1.2e-22
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLM 874
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+ D + V L+
Sbjct: 1148 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1207
Query: 875 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE--- 931
+AG LG+N+ AA I+ D WNP + QA R HRIGQ++ V V RL R++ E
Sbjct: 1208 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 1267
Query: 932 -DRI-LKLQDDKRKMVASAFGEDQGGGTA----SRLTVEDL 966
D+ LKL DK ++ S G D G T S+ +EDL
Sbjct: 1268 FDKASLKLGLDKA-VLQSMSGRD-GNITGIQQFSKKEIEDL 1306
Score = 118 (46.6 bits), Expect = 1.2e-22, Sum P(5) = 1.2e-22
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
+KLQA+L+ +MLRR K D + NL PK ++ +V+ + + +Y+ + L+K
Sbjct: 1019 QKLQAILKPMMLRRLKE---DVEK--NLAPKQETIIEVELTNIQKKYYRAI----LEKNF 1069
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLLV 648
+F G + N N+L ++ LR+ C+HP L+
Sbjct: 1070 SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Score = 70 (29.7 bits), Expect = 1.2e-22, Sum P(5) = 1.2e-22
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 851
Score = 56 (24.8 bits), Expect = 1.2e-22, Sum P(5) = 1.2e-22
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 863 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 918
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 919 KFDALITTFEMILSDCPELREIE 941
Score = 53 (23.7 bits), Expect = 1.2e-22, Sum P(5) = 1.2e-22
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQV 530
C L ++ W V++DEA +KN ++
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKL 960
Score = 42 (19.8 bits), Expect = 9.9e-19, Sum P(4) = 9.9e-19
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEA 458
P EL+K SI ++ QP+ E+ A
Sbjct: 75 PTELSKESTAPAPESITLHDYTTQPASQEQPA 106
Score = 40 (19.1 bits), Expect = 3.2e-05, Sum P(5) = 3.2e-05
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 894 LDLWWNPTTEDQAVDRA---HRIGQT 916
L WW P D + R H + QT
Sbjct: 1920 LPKWWEPVRHDGELLRGAARHGVSQT 1945
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 244 (91.0 bits), Expect = 1.3e-22, Sum P(5) = 1.3e-22
Identities = 58/154 (37%), Positives = 89/154 (57%)
Query: 815 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVML 873
+G + ++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN + L
Sbjct: 970 DGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1029
Query: 874 MSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDR 933
+S +AG LG+N+ A VI+ D WNP + QA RAHRIGQ + V + R R +VE+R
Sbjct: 1030 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1089
Query: 934 ILKLQDDKRKMVASAFGEDQGGGTAS-RLTVEDL 966
I ++ KRKM+ + G G+ S +T ++L
Sbjct: 1090 ITQVA--KRKMMLTHLVVRPGLGSKSGSMTKQEL 1121
Score = 96 (38.9 bits), Expect = 1.3e-22, Sum P(5) = 1.3e-22
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 616
KKL +L MLRR K N+P KT + +V+ S+ + +YK + + + F+
Sbjct: 850 KKLHDLLGPHMLRRLKADVFK-----NMPAKTELIVRVELSQMQKKYYKFILT---RNFE 901
Query: 617 AFADAGTVNQNYANILLMLLRLRQACDHPLL 647
A G NQ ++L +++ L++ C+HP L
Sbjct: 902 ALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 930
Score = 58 (25.5 bits), Expect = 1.3e-22, Sum P(5) = 1.3e-22
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 300 ILADDQGLGKTISIIALIQMQRSLQSKSK 328
ILAD+ GLGKT+ I + Q SK
Sbjct: 653 ILADEMGLGKTVQTIVFLYSLYKEQGHSK 681
Score = 55 (24.4 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKK 480
S ++EE +EK+ E+ G S++S NKK+KK
Sbjct: 7 SDNDEEIEEKS-ESEG--SDYSPNKKKKK 32
Score = 51 (23.0 bits), Expect = 1.3e-22, Sum P(5) = 1.3e-22
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLR 538
L + W +V+DEA +KN++++ R S +
Sbjct: 768 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYK 799
Score = 50 (22.7 bits), Expect = 1.3e-22, Sum P(5) = 1.3e-22
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 685 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 722
Score = 41 (19.5 bits), Expect = 1.0e-21, Sum P(5) = 1.0e-21
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K ++ K+ V+LT+Y ++T
Sbjct: 742 RMKKEAQI-KFHVLLTSYELIT 762
Score = 37 (18.1 bits), Expect = 8.2e-20, Sum P(4) = 8.2e-20
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 455 EEEADEKNGETYGLSSEFSVNKKRK 479
+ + DE YG E S +KRK
Sbjct: 476 KNDMDEPPAFDYGSGDEDSQREKRK 500
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 230 (86.0 bits), Expect = 1.4e-22, Sum P(5) = 1.4e-22
Identities = 51/126 (40%), Positives = 76/126 (60%)
Query: 821 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAG 879
++FSQ RMLD++ L ++RLDG++ R +A+ FN D E L+S +AG
Sbjct: 811 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAG 870
Query: 880 NLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939
LG+N+ +A V++ D WNP + QA RAHRIGQ + V + RL + TVE+ I++
Sbjct: 871 GLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERA- 929
Query: 940 DKRKMV 945
K+KMV
Sbjct: 930 -KKKMV 934
Score = 92 (37.4 bits), Expect = 1.4e-22, Sum P(5) = 1.4e-22
Identities = 35/130 (26%), Positives = 68/130 (52%)
Query: 554 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 613
+GY+ L VL +LRR K D + +LP K + +V+ S + +YK + + +
Sbjct: 684 NGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQILRVEMSALQKQYYKWILT---R 735
Query: 614 KFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK---EYDFDSVGKISGEMAKRLPRD 670
+KA A GT + L +++ L++ C+H L+K E + ++ ++ + + +
Sbjct: 736 NYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKL 793
Query: 671 MLID-LLSRL 679
+L+D LL+RL
Sbjct: 794 ILLDKLLTRL 803
Score = 67 (28.6 bits), Expect = 1.4e-22, Sum P(5) = 1.4e-22
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 537 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 594 TTYEILLKD 602
Score = 59 (25.8 bits), Expect = 1.4e-22, Sum P(5) = 1.4e-22
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 481 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 523
Score = 45 (20.9 bits), Expect = 1.4e-22, Sum P(5) = 1.4e-22
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGYKKLQAVLR 564
L + W + +DEA +KN + + + ++ + P+ +NSL K+L ++L
Sbjct: 606 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPL-QNSL---KELWSLLH 661
Query: 565 AIM 567
IM
Sbjct: 662 FIM 664
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 268 (99.4 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 56/128 (43%), Positives = 81/128 (63%)
Query: 819 KSIVFSQWTRMLDLVENSLNQHCIQYR--RLDGTMSLPARDRAVKDFNTDREITVMLMSL 876
K ++FSQ+ LD++++ H + R+DG +S R +K FNTD++ + L+S
Sbjct: 644 KILIFSQFKTQLDILQDWAT-HLRSWNCCRIDGAISQADRQAQIKAFNTDKDYKIFLLST 702
Query: 877 KAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936
+AG G+N+VAA VIL D WNP + QA DRAHRIGQT+PV V RL + TVE +L+
Sbjct: 703 RAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATKGTVEQTLLE 762
Query: 937 LQDDKRKM 944
D KR++
Sbjct: 763 KADSKRRL 770
Score = 79 (32.9 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 250 YQAALEDLNQPKVEATL-PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
++A L + ++ AT P + + K+Q L W+ L C GILAD+ GLG
Sbjct: 176 FEAKPTVLGEQELVATQQPAPVTGGKMRKYQLEGLEWLKSLWMNGL-C--GILADEMGLG 232
Query: 309 KTISIIALI 317
KT+ I+LI
Sbjct: 233 KTVQAISLI 241
Score = 48 (22.0 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLR-AKRSTIK-IPISRNSLHGYKKLQAVLR 564
LA+ W +++DE +KN ++ + S A R I P+ N + L +L
Sbjct: 323 LAQYQWRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNITELWSLLHFLLP 382
Query: 565 AI 566
I
Sbjct: 383 EI 384
Score = 39 (18.8 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 182 VNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERA 241
+N G R Y +K + +M G P SL S S+ S + R + RA
Sbjct: 465 LNGTG--RQYLEEKATERLMAKNGMISRPRSLKRSASSSVVSTPNKSVRSSRDSTPGSRA 522
WARNING: HSPs involving 303 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 972 893 0.00087 122 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 553
No. of states in DFA: 626 (67 KB)
Total size of DFA: 415 KB (2201 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 74.97u 0.12s 75.09t Elapsed: 00:00:03
Total cpu time: 75.04u 0.12s 75.16t Elapsed: 00:00:03
Start: Tue May 21 13:05:39 2013 End: Tue May 21 13:05:42 2013
WARNINGS ISSUED: 2