Query 002077
Match_columns 972
No_of_seqs 330 out of 2306
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 15:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 9E-102 2E-106 841.7 36.7 542 263-971 174-790 (791)
2 KOG4439 RNA polymerase II tran 100.0 2.9E-83 6.4E-88 722.9 38.8 513 264-972 316-901 (901)
3 KOG1001 Helicase-like transcri 100.0 5.2E-81 1.1E-85 742.3 28.2 532 246-951 106-673 (674)
4 KOG0385 Chromatin remodeling c 100.0 4.3E-79 9.3E-84 695.0 36.9 425 265-952 158-623 (971)
5 KOG0389 SNF2 family DNA-depend 100.0 1.1E-77 2.4E-82 686.3 30.9 452 272-952 397-912 (941)
6 KOG0387 Transcription-coupled 100.0 6E-77 1.3E-81 681.5 34.8 442 262-971 194-698 (923)
7 KOG0392 SNF2 family DNA-depend 100.0 1.1E-76 2.5E-81 698.9 35.6 490 250-971 950-1495(1549)
8 PLN03142 Probable chromatin-re 100.0 9.4E-75 2E-79 713.3 42.6 439 266-971 162-641 (1033)
9 KOG0391 SNF2 family DNA-depend 100.0 1.6E-72 3.5E-77 654.7 33.9 542 269-972 610-1429(1958)
10 KOG0384 Chromodomain-helicase 100.0 2.2E-69 4.9E-74 641.3 31.9 449 266-970 362-856 (1373)
11 KOG0388 SNF2 family DNA-depend 100.0 9.6E-66 2.1E-70 577.4 29.2 506 269-951 562-1177(1185)
12 KOG0390 DNA repair protein, SN 100.0 1.6E-61 3.4E-66 571.2 35.6 455 271-971 235-748 (776)
13 KOG0386 Chromatin remodeling c 100.0 8.2E-63 1.8E-67 575.8 19.7 442 265-970 385-877 (1157)
14 KOG1015 Transcription regulato 100.0 2.6E-58 5.7E-63 529.1 26.8 545 271-972 665-1318(1567)
15 COG0553 HepA Superfamily II DN 100.0 1.1E-57 2.5E-62 576.9 34.1 461 270-971 334-864 (866)
16 KOG1000 Chromatin remodeling p 100.0 3.6E-49 7.9E-54 432.0 28.3 387 266-948 191-623 (689)
17 PRK04914 ATP-dependent helicas 100.0 1.9E-48 4.1E-53 479.5 30.3 384 272-950 150-627 (956)
18 KOG1016 Predicted DNA helicase 100.0 1.5E-47 3.2E-52 433.2 24.0 539 274-971 254-889 (1387)
19 KOG0298 DEAD box-containing he 100.0 2E-45 4.4E-50 439.3 16.7 191 684-947 1154-1345(1394)
20 TIGR00603 rad25 DNA repair hel 100.0 4.7E-35 1E-39 350.2 33.8 362 272-946 253-623 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 2.8E-36 6.1E-41 334.3 15.4 256 278-648 1-299 (299)
22 PRK13766 Hef nuclease; Provisi 100.0 2.7E-30 5.9E-35 323.1 41.4 455 272-945 13-496 (773)
23 KOG0383 Predicted helicase [Ge 100.0 1.3E-33 2.9E-38 332.1 7.2 366 273-882 294-696 (696)
24 COG1111 MPH1 ERCC4-like helica 99.9 1.6E-23 3.4E-28 234.3 32.8 460 272-948 13-501 (542)
25 COG1061 SSL2 DNA or RNA helica 99.9 1.5E-23 3.2E-28 244.8 29.4 366 271-939 33-405 (442)
26 PHA02558 uvsW UvsW helicase; P 99.9 2.5E-23 5.3E-28 247.3 31.3 111 819-930 346-457 (501)
27 KOG1123 RNA polymerase II tran 99.9 7.9E-22 1.7E-26 217.6 17.7 360 260-934 291-659 (776)
28 PTZ00110 helicase; Provisional 99.9 1.1E-19 2.3E-24 217.9 30.7 125 771-928 360-484 (545)
29 PRK11192 ATP-dependent RNA hel 99.8 3.7E-18 8.1E-23 200.2 30.8 102 818-921 246-347 (434)
30 PRK11776 ATP-dependent RNA hel 99.8 2.6E-18 5.7E-23 202.9 29.1 106 819-928 244-349 (460)
31 PRK04837 ATP-dependent RNA hel 99.8 2E-18 4.3E-23 201.8 27.1 105 819-927 257-361 (423)
32 PRK01297 ATP-dependent RNA hel 99.8 1.1E-17 2.3E-22 198.4 29.7 133 819-968 337-469 (475)
33 PRK10590 ATP-dependent RNA hel 99.8 5.9E-18 1.3E-22 199.5 27.2 102 818-921 246-347 (456)
34 PLN00206 DEAD-box ATP-dependen 99.8 1.2E-17 2.6E-22 199.6 29.3 106 819-928 369-475 (518)
35 PRK04537 ATP-dependent RNA hel 99.8 3E-18 6.4E-23 206.3 23.7 99 819-919 259-357 (572)
36 KOG0354 DEAD-box like helicase 99.8 7.2E-17 1.6E-21 190.9 32.2 146 770-949 393-549 (746)
37 PRK11634 ATP-dependent RNA hel 99.8 4.9E-17 1.1E-21 197.1 31.3 100 819-920 247-346 (629)
38 PTZ00424 helicase 45; Provisio 99.8 4.5E-17 9.8E-22 188.9 27.8 106 819-928 269-374 (401)
39 TIGR00614 recQ_fam ATP-depende 99.8 2.3E-17 5E-22 195.1 25.3 102 819-922 228-329 (470)
40 KOG0331 ATP-dependent RNA heli 99.8 2.7E-17 5.9E-22 189.2 21.8 121 770-920 322-442 (519)
41 TIGR01389 recQ ATP-dependent D 99.8 6.4E-17 1.4E-21 196.7 25.2 100 819-920 226-325 (591)
42 PRK11057 ATP-dependent DNA hel 99.8 7.1E-17 1.5E-21 196.2 24.5 98 819-918 238-335 (607)
43 TIGR00643 recG ATP-dependent D 99.7 2E-16 4.2E-21 193.1 27.3 100 819-920 450-560 (630)
44 PRK11448 hsdR type I restricti 99.7 3.8E-16 8.3E-21 198.1 24.9 105 818-925 699-815 (1123)
45 TIGR00580 mfd transcription-re 99.7 1.6E-15 3.4E-20 189.4 28.7 105 819-927 662-769 (926)
46 PRK10917 ATP-dependent DNA hel 99.7 3E-15 6.5E-20 184.0 30.0 99 819-919 473-582 (681)
47 PRK10689 transcription-repair 99.7 2.9E-15 6.3E-20 190.8 29.3 100 819-920 811-913 (1147)
48 PLN03137 ATP-dependent DNA hel 99.7 1.2E-15 2.5E-20 188.2 23.8 102 819-922 682-783 (1195)
49 TIGR03817 DECH_helic helicase/ 99.6 1.1E-14 2.5E-19 179.9 24.4 113 819-935 273-393 (742)
50 cd00079 HELICc Helicase superf 99.6 1.7E-15 3.7E-20 146.5 12.0 120 772-922 12-131 (131)
51 PRK02362 ski2-like helicase; P 99.6 3.7E-14 8.1E-19 176.5 25.5 105 819-925 245-394 (737)
52 COG0513 SrmB Superfamily II DN 99.6 1.4E-13 3E-18 164.0 29.0 105 819-927 275-379 (513)
53 PRK13767 ATP-dependent helicas 99.6 1.1E-13 2.4E-18 174.3 26.3 103 819-923 286-395 (876)
54 TIGR03714 secA2 accessory Sec 99.6 1.8E-13 3.9E-18 165.3 26.4 117 770-920 406-531 (762)
55 PRK01172 ski2-like helicase; P 99.6 3.5E-13 7.6E-18 166.5 25.4 72 844-918 288-368 (674)
56 KOG0330 ATP-dependent RNA heli 99.6 1.6E-13 3.4E-18 149.4 19.1 109 819-931 302-410 (476)
57 TIGR01587 cas3_core CRISPR-ass 99.6 4.4E-13 9.6E-18 153.3 23.9 105 819-928 224-338 (358)
58 PRK09200 preprotein translocas 99.5 7.4E-13 1.6E-17 161.5 26.7 129 771-937 411-547 (790)
59 PRK00254 ski2-like helicase; P 99.5 1.6E-12 3.5E-17 161.6 27.5 84 843-928 297-388 (720)
60 KOG0335 ATP-dependent RNA heli 99.5 2.3E-13 5.1E-18 154.5 16.5 130 770-923 312-441 (482)
61 PRK12898 secA preprotein trans 99.5 5.9E-12 1.3E-16 150.7 27.0 130 771-938 456-593 (656)
62 TIGR00348 hsdR type I site-spe 99.5 5.7E-12 1.2E-16 154.7 27.5 106 819-926 516-649 (667)
63 PF00271 Helicase_C: Helicase 99.5 4.2E-14 9.1E-19 125.1 6.2 78 835-914 1-78 (78)
64 TIGR00963 secA preprotein tran 99.5 9.4E-12 2E-16 149.8 26.4 118 771-921 388-512 (745)
65 KOG0350 DEAD-box ATP-dependent 99.5 1.3E-12 2.9E-17 145.9 17.2 98 819-918 431-532 (620)
66 KOG0333 U5 snRNP-like RNA heli 99.5 4.5E-12 9.7E-17 142.4 21.1 117 770-919 501-617 (673)
67 TIGR02621 cas3_GSU0051 CRISPR- 99.4 2.3E-11 4.9E-16 148.8 27.5 101 819-924 274-390 (844)
68 KOG0328 Predicted ATP-dependen 99.4 5.5E-12 1.2E-16 132.1 18.4 106 819-928 268-373 (400)
69 PRK05580 primosome assembly pr 99.4 2.3E-11 4.9E-16 149.5 25.0 95 830-926 439-549 (679)
70 smart00490 HELICc helicase sup 99.4 1.3E-12 2.8E-17 115.4 8.1 81 832-914 2-82 (82)
71 KOG0348 ATP-dependent RNA heli 99.4 2.2E-10 4.7E-15 129.3 27.1 121 818-944 426-568 (708)
72 PRK09401 reverse gyrase; Revie 99.3 6E-11 1.3E-15 152.1 24.2 89 819-913 330-431 (1176)
73 KOG4284 DEAD box protein [Tran 99.3 7.8E-12 1.7E-16 142.9 14.1 106 819-927 274-379 (980)
74 TIGR03158 cas3_cyano CRISPR-as 99.3 1.6E-10 3.5E-15 132.1 23.2 83 818-911 273-357 (357)
75 KOG0343 RNA Helicase [RNA proc 99.3 2E-10 4.3E-15 130.0 21.6 135 771-941 298-434 (758)
76 COG1200 RecG RecG-like helicas 99.3 4.1E-10 8.8E-15 132.5 24.2 75 841-917 507-582 (677)
77 TIGR00595 priA primosomal prot 99.3 4.2E-10 9.1E-15 133.8 24.1 96 831-928 272-383 (505)
78 KOG0336 ATP-dependent RNA heli 99.3 2.7E-10 5.9E-15 124.6 20.1 108 818-928 466-573 (629)
79 KOG0339 ATP-dependent RNA heli 99.3 1.4E-10 3E-15 129.9 18.1 127 770-930 451-577 (731)
80 KOG0342 ATP-dependent RNA heli 99.3 1.7E-10 3.6E-15 129.6 18.3 116 771-918 314-429 (543)
81 COG4096 HsdR Type I site-speci 99.3 2.3E-10 5E-15 136.0 20.3 106 818-925 427-545 (875)
82 TIGR01054 rgy reverse gyrase. 99.3 4.8E-10 1E-14 144.1 24.8 75 819-898 328-409 (1171)
83 PRK09751 putative ATP-dependen 99.2 2.5E-10 5.5E-15 147.1 20.7 93 819-913 246-371 (1490)
84 PRK13104 secA preprotein trans 99.2 1.7E-09 3.6E-14 132.3 26.4 132 770-939 426-595 (896)
85 COG1205 Distinct helicase fami 99.2 4.4E-10 9.5E-15 140.2 21.9 114 819-936 308-430 (851)
86 PHA02653 RNA helicase NPH-II; 99.2 5.4E-09 1.2E-13 127.2 30.7 112 819-937 397-522 (675)
87 PF04851 ResIII: Type III rest 99.2 5.5E-11 1.2E-15 121.8 10.5 109 273-446 2-125 (184)
88 PRK12906 secA preprotein trans 99.2 2.6E-09 5.7E-14 130.0 26.5 117 771-920 423-547 (796)
89 KOG0345 ATP-dependent RNA heli 99.2 1.3E-09 2.9E-14 121.7 19.6 120 770-922 239-360 (567)
90 PRK14701 reverse gyrase; Provi 99.2 2.1E-09 4.5E-14 141.1 23.7 92 819-916 332-446 (1638)
91 smart00487 DEXDc DEAD-like hel 99.1 2.4E-10 5.2E-15 117.4 11.5 110 273-446 7-119 (201)
92 COG1201 Lhr Lhr-like helicases 99.1 8.5E-09 1.9E-13 125.9 25.8 118 819-942 255-374 (814)
93 PRK12904 preprotein translocas 99.1 1.7E-08 3.8E-13 123.4 27.4 129 771-937 413-579 (830)
94 COG0514 RecQ Superfamily II DN 99.1 7.6E-09 1.7E-13 122.1 22.8 101 819-921 232-332 (590)
95 COG1202 Superfamily II helicas 99.1 2.4E-09 5.2E-14 121.9 17.4 144 770-939 416-573 (830)
96 KOG0340 ATP-dependent RNA heli 99.1 1.4E-08 3E-13 110.3 22.1 118 771-918 236-353 (442)
97 TIGR01970 DEAH_box_HrpB ATP-de 99.1 1.9E-08 4.2E-13 125.2 26.6 105 819-928 211-336 (819)
98 PRK09694 helicase Cas3; Provis 99.1 1.8E-08 3.9E-13 125.6 26.2 95 819-916 562-665 (878)
99 COG1204 Superfamily II helicas 99.1 8.1E-09 1.8E-13 127.3 21.5 104 274-445 31-135 (766)
100 KOG0347 RNA helicase [RNA proc 99.0 1.9E-09 4.1E-14 122.2 14.4 128 817-948 463-611 (731)
101 KOG0344 ATP-dependent RNA heli 99.0 9.4E-09 2E-13 118.3 19.4 116 770-918 371-487 (593)
102 cd00046 DEXDc DEAD-like helica 99.0 1.5E-09 3.2E-14 104.8 10.9 89 298-446 2-93 (144)
103 PRK11664 ATP-dependent RNA hel 99.0 3.8E-08 8.2E-13 122.8 25.4 106 819-929 214-340 (812)
104 PRK13107 preprotein translocas 99.0 1.1E-07 2.5E-12 116.2 27.7 132 770-939 431-599 (908)
105 KOG0334 RNA helicase [RNA proc 99.0 2.3E-08 5E-13 121.8 20.1 124 770-927 596-719 (997)
106 KOG0338 ATP-dependent RNA heli 99.0 9.2E-09 2E-13 115.8 15.4 96 819-916 428-523 (691)
107 COG1197 Mfd Transcription-repa 98.8 9.8E-07 2.1E-11 109.9 28.8 117 819-939 805-929 (1139)
108 KOG0332 ATP-dependent RNA heli 98.8 3.3E-08 7.2E-13 107.9 13.5 109 819-931 332-447 (477)
109 PRK12900 secA preprotein trans 98.8 4.6E-07 1E-11 111.5 24.4 131 771-939 581-719 (1025)
110 COG4889 Predicted helicase [Ge 98.8 6.7E-07 1.5E-11 106.1 22.7 92 826-918 480-577 (1518)
111 cd00268 DEADc DEAD-box helicas 98.7 5.5E-08 1.2E-12 102.0 10.6 109 274-445 21-132 (203)
112 PRK12899 secA preprotein trans 98.7 2E-06 4.4E-11 105.7 25.2 130 771-938 551-688 (970)
113 PF11496 HDA2-3: Class II hist 98.7 5.4E-07 1.2E-11 99.8 18.2 225 589-939 5-256 (297)
114 PRK12326 preprotein translocas 98.7 3.3E-06 7.1E-11 101.5 25.4 132 770-939 409-555 (764)
115 COG1203 CRISPR-associated heli 98.7 8.8E-07 1.9E-11 110.4 21.1 122 819-943 442-567 (733)
116 KOG0341 DEAD-box protein abstr 98.6 1E-07 2.2E-12 104.2 10.0 121 819-943 423-547 (610)
117 COG0556 UvrB Helicase subunit 98.6 1.4E-05 3.1E-10 91.5 27.4 137 771-939 429-570 (663)
118 KOG0326 ATP-dependent RNA heli 98.6 3.7E-08 8.1E-13 105.3 6.1 97 819-917 324-420 (459)
119 TIGR01967 DEAH_box_HrpA ATP-de 98.6 1.8E-06 4E-11 110.7 22.4 107 818-931 280-407 (1283)
120 TIGR00631 uvrb excinuclease AB 98.6 2.9E-07 6.3E-12 112.5 14.7 124 771-928 425-553 (655)
121 PRK11131 ATP-dependent RNA hel 98.6 6.5E-06 1.4E-10 105.5 25.4 106 818-930 287-413 (1294)
122 PRK05298 excinuclease ABC subu 98.6 8.4E-07 1.8E-11 109.1 16.9 122 771-926 429-555 (652)
123 TIGR00596 rad1 DNA repair prot 98.4 3.8E-05 8.3E-10 95.5 25.0 108 512-622 32-148 (814)
124 PRK12903 secA preprotein trans 98.4 0.00011 2.4E-09 89.9 27.9 131 770-938 408-546 (925)
125 PF13872 AAA_34: P-loop contai 98.3 2.7E-06 5.9E-11 92.9 11.3 112 273-446 36-150 (303)
126 PF00270 DEAD: DEAD/DEAH box h 98.3 1.8E-06 3.8E-11 87.4 9.2 104 277-446 2-109 (169)
127 PF13871 Helicase_C_4: Helicas 98.3 1.4E-06 3E-11 94.8 7.6 93 858-952 52-152 (278)
128 PRK13103 secA preprotein trans 98.3 4E-05 8.6E-10 94.5 20.0 131 770-938 431-598 (913)
129 TIGR01407 dinG_rel DnaQ family 98.3 0.00069 1.5E-08 86.4 32.0 97 819-920 676-808 (850)
130 KOG0952 DNA/RNA helicase MER3/ 98.2 0.0003 6.5E-09 86.3 26.8 82 848-931 403-494 (1230)
131 COG1110 Reverse gyrase [DNA re 98.2 5.5E-05 1.2E-09 92.5 19.9 73 819-897 337-416 (1187)
132 KOG0327 Translation initiation 98.2 4E-06 8.8E-11 92.7 9.1 112 819-936 265-376 (397)
133 COG1198 PriA Primosomal protei 98.2 0.00014 3.1E-09 88.9 21.8 96 831-928 494-605 (730)
134 COG4098 comFA Superfamily II D 98.1 0.00015 3.2E-09 79.4 18.8 102 819-924 307-414 (441)
135 KOG0823 Predicted E3 ubiquitin 98.1 1.8E-06 3.8E-11 89.5 2.5 55 681-737 45-101 (230)
136 PLN03208 E3 ubiquitin-protein 98.0 3.4E-06 7.4E-11 86.0 3.7 52 682-735 17-83 (193)
137 KOG1513 Nuclear helicase MOP-3 98.0 0.00044 9.6E-09 82.2 19.5 82 860-943 850-939 (1300)
138 smart00504 Ubox Modified RING 97.9 5.4E-06 1.2E-10 70.1 1.7 47 684-733 2-48 (63)
139 PF13923 zf-C3HC4_2: Zinc fing 97.9 7.2E-06 1.6E-10 62.5 1.9 37 686-723 1-38 (39)
140 PF15227 zf-C3HC4_4: zinc fing 97.8 8.8E-06 1.9E-10 63.1 2.2 37 686-722 1-40 (42)
141 KOG0320 Predicted E3 ubiquitin 97.8 9.4E-06 2E-10 80.6 2.4 49 681-732 129-179 (187)
142 KOG0317 Predicted E3 ubiquitin 97.7 1.6E-05 3.5E-10 84.8 3.0 50 682-734 238-287 (293)
143 PRK12901 secA preprotein trans 97.7 0.0042 9E-08 77.7 22.5 131 770-938 610-748 (1112)
144 KOG0346 RNA helicase [RNA proc 97.6 0.00022 4.8E-09 80.1 10.2 107 819-928 270-410 (569)
145 CHL00122 secA preprotein trans 97.6 0.0061 1.3E-07 75.5 22.8 83 770-884 406-489 (870)
146 KOG0349 Putative DEAD-box RNA 97.6 0.00019 4.2E-09 80.0 9.0 94 818-913 506-602 (725)
147 KOG2164 Predicted E3 ubiquitin 97.6 3.9E-05 8.5E-10 87.8 2.9 51 683-733 186-238 (513)
148 KOG0978 E3 ubiquitin ligase in 97.5 3.6E-05 7.8E-10 92.2 1.2 50 683-734 643-692 (698)
149 PF02399 Herpes_ori_bp: Origin 97.5 0.0034 7.4E-08 76.8 17.7 91 819-917 284-380 (824)
150 KOG0953 Mitochondrial RNA heli 97.4 0.00047 1E-08 79.6 9.3 106 819-928 360-477 (700)
151 TIGR00599 rad18 DNA repair pro 97.4 6.3E-05 1.4E-09 85.8 2.3 49 682-733 25-73 (397)
152 PF00097 zf-C3HC4: Zinc finger 97.4 8.1E-05 1.7E-09 57.3 2.1 37 686-722 1-39 (41)
153 PHA02929 N1R/p28-like protein; 97.4 0.00011 2.4E-09 78.4 3.3 47 682-731 173-227 (238)
154 KOG0329 ATP-dependent RNA heli 97.4 0.0019 4.2E-08 67.9 12.2 45 873-917 302-346 (387)
155 PF13920 zf-C3HC4_3: Zinc fing 97.4 9.3E-05 2E-09 59.7 2.0 46 683-731 2-48 (50)
156 KOG0353 ATP-dependent DNA heli 97.3 0.0064 1.4E-07 67.1 16.0 104 819-924 319-465 (695)
157 KOG0951 RNA helicase BRR2, DEA 97.3 0.014 3.1E-07 73.2 20.7 71 843-915 609-689 (1674)
158 PF13445 zf-RING_UBOX: RING-ty 97.3 7.8E-05 1.7E-09 58.0 0.8 30 686-716 1-34 (43)
159 KOG0351 ATP-dependent DNA heli 97.3 0.00052 1.1E-08 86.4 8.4 104 818-923 486-589 (941)
160 PRK12902 secA preprotein trans 97.3 0.037 8E-07 68.8 23.8 64 771-863 422-486 (939)
161 KOG0947 Cytoplasmic exosomal R 97.2 0.012 2.5E-07 72.2 17.8 74 847-922 636-717 (1248)
162 KOG0337 ATP-dependent RNA heli 97.2 0.00053 1.1E-08 76.9 5.7 115 770-916 244-358 (529)
163 smart00184 RING Ring finger. E 97.1 0.00035 7.6E-09 52.0 2.7 38 686-723 1-38 (39)
164 PF13639 zf-RING_2: Ring finge 97.1 0.00016 3.4E-09 56.7 0.7 38 685-723 2-42 (44)
165 COG5432 RAD18 RING-finger-cont 97.1 0.00026 5.7E-09 74.9 2.0 44 683-729 25-68 (391)
166 PF04564 U-box: U-box domain; 97.0 0.00024 5.1E-09 62.2 1.4 49 683-733 4-52 (73)
167 PHA02926 zinc finger-like prot 97.0 0.00042 9E-09 71.6 3.1 48 682-731 169-230 (242)
168 cd00162 RING RING-finger (Real 97.0 0.00048 1E-08 53.2 2.5 42 685-728 1-43 (45)
169 COG5574 PEX10 RING-finger-cont 97.0 0.00038 8.1E-09 73.7 2.1 48 682-731 214-262 (271)
170 PF14634 zf-RING_5: zinc-RING 96.9 0.00065 1.4E-08 53.2 2.8 38 685-723 1-41 (44)
171 KOG0824 Predicted E3 ubiquitin 96.7 0.00082 1.8E-08 72.2 2.5 57 682-740 6-62 (324)
172 KOG0352 ATP-dependent DNA heli 96.6 0.0038 8.1E-08 70.2 7.0 102 819-922 257-358 (641)
173 KOG0287 Postreplication repair 96.6 0.00049 1.1E-08 74.5 -0.4 45 684-731 24-68 (442)
174 PRK15483 type III restriction- 96.5 0.012 2.6E-07 74.0 11.1 71 869-940 501-579 (986)
175 TIGR00570 cdk7 CDK-activating 96.4 0.0029 6.3E-08 69.6 3.9 50 683-734 3-57 (309)
176 KOG1785 Tyrosine kinase negati 96.3 0.0022 4.9E-08 70.7 2.9 56 672-727 358-414 (563)
177 TIGR03117 cas_csf4 CRISPR-asso 96.3 0.033 7.2E-07 68.0 12.6 79 819-901 473-564 (636)
178 KOG4172 Predicted E3 ubiquitin 96.3 0.0014 3E-08 52.4 0.5 47 683-731 7-54 (62)
179 KOG1133 Helicase of the DEAD s 96.2 0.18 3.9E-06 60.5 17.9 81 818-899 630-721 (821)
180 PF11789 zf-Nse: Zinc-finger o 96.2 0.0021 4.5E-08 53.3 1.3 46 682-727 10-57 (57)
181 PF14835 zf-RING_6: zf-RING of 96.2 0.0028 6.2E-08 53.0 2.1 43 683-730 7-50 (65)
182 smart00488 DEXDc2 DEAD-like he 96.2 0.035 7.7E-07 61.9 11.5 43 274-319 8-50 (289)
183 smart00489 DEXDc3 DEAD-like he 96.2 0.035 7.7E-07 61.9 11.5 43 274-319 8-50 (289)
184 KOG2879 Predicted E3 ubiquitin 96.1 0.0034 7.3E-08 66.8 2.6 48 681-730 237-286 (298)
185 COG0610 Type I site-specific r 96.0 0.019 4.2E-07 73.8 9.5 70 854-925 578-650 (962)
186 PF13086 AAA_11: AAA domain; P 95.9 0.051 1.1E-06 57.5 10.9 40 274-320 1-41 (236)
187 PF07652 Flavi_DEAD: Flaviviru 95.8 0.039 8.5E-07 54.5 8.6 52 385-445 34-85 (148)
188 KOG0311 Predicted E3 ubiquitin 95.3 0.0036 7.7E-08 68.8 -0.7 48 682-731 42-90 (381)
189 KOG1802 RNA helicase nonsense 95.1 0.07 1.5E-06 63.4 8.8 80 274-424 410-490 (935)
190 KOG2177 Predicted E3 ubiquitin 94.8 0.012 2.6E-07 65.1 1.5 43 682-727 12-54 (386)
191 COG4581 Superfamily II RNA hel 94.4 0.13 2.8E-06 65.4 9.1 77 846-924 449-533 (1041)
192 PF12678 zf-rbx1: RING-H2 zinc 93.9 0.034 7.4E-07 48.7 2.1 40 683-723 19-71 (73)
193 PF13307 Helicase_C_2: Helicas 93.8 0.21 4.5E-06 51.0 7.9 98 818-921 10-145 (167)
194 COG5222 Uncharacterized conser 93.8 0.031 6.8E-07 59.8 1.8 40 684-723 275-315 (427)
195 COG5540 RING-finger-containing 93.6 0.031 6.7E-07 60.3 1.5 46 683-730 323-371 (374)
196 COG5152 Uncharacterized conser 93.6 0.025 5.4E-07 57.3 0.6 39 683-722 196-234 (259)
197 PRK07246 bifunctional ATP-depe 93.4 0.5 1.1E-05 60.2 11.9 96 819-919 649-776 (820)
198 KOG1131 RNA polymerase II tran 93.1 0.8 1.7E-05 53.4 11.7 46 275-324 17-63 (755)
199 KOG0802 E3 ubiquitin ligase [P 93.1 0.04 8.6E-07 66.9 1.4 45 681-726 289-338 (543)
200 KOG4150 Predicted ATP-dependen 92.9 0.27 5.9E-06 57.4 7.6 117 768-915 505-629 (1034)
201 KOG0950 DNA polymerase theta/e 92.6 1.4 3E-05 55.1 13.6 106 844-954 525-636 (1008)
202 KOG4159 Predicted E3 ubiquitin 92.5 0.064 1.4E-06 61.7 2.0 48 682-732 83-130 (398)
203 KOG4628 Predicted E3 ubiquitin 92.3 0.075 1.6E-06 59.7 2.2 48 684-733 230-280 (348)
204 smart00492 HELICc3 helicase su 92.3 1 2.3E-05 44.7 10.0 71 829-901 3-83 (141)
205 PF07517 SecA_DEAD: SecA DEAD- 92.0 0.4 8.7E-06 52.6 7.4 57 385-445 119-179 (266)
206 KOG0826 Predicted E3 ubiquitin 92.0 0.071 1.5E-06 58.4 1.4 53 677-730 294-347 (357)
207 PF02562 PhoH: PhoH-like prote 91.9 0.22 4.8E-06 52.5 5.0 40 274-320 4-43 (205)
208 KOG1813 Predicted E3 ubiquitin 91.9 0.072 1.6E-06 57.6 1.4 45 683-730 241-285 (313)
209 PRK08074 bifunctional ATP-depe 91.9 1.2 2.6E-05 57.8 12.6 99 819-919 754-886 (928)
210 PRK08074 bifunctional ATP-depe 91.8 1.2 2.7E-05 57.6 12.7 41 273-316 256-296 (928)
211 KOG2660 Locus-specific chromos 91.7 0.053 1.2E-06 59.6 0.1 43 683-726 15-58 (331)
212 KOG1132 Helicase of the DEAD s 91.4 1.3 2.9E-05 54.8 11.4 81 819-900 563-658 (945)
213 COG5220 TFB3 Cdk activating ki 91.4 0.073 1.6E-06 55.5 0.7 52 682-733 9-66 (314)
214 KOG4692 Predicted E3 ubiquitin 91.0 0.12 2.6E-06 56.7 1.9 35 682-716 421-455 (489)
215 COG3587 Restriction endonuclea 90.8 0.62 1.4E-05 57.4 7.8 47 868-914 482-528 (985)
216 PRK11747 dinG ATP-dependent DN 90.2 2.4 5.2E-05 53.3 12.6 75 819-898 536-616 (697)
217 COG1199 DinG Rad3-related DNA 89.8 1.9 4.1E-05 53.8 11.4 99 819-921 481-612 (654)
218 PRK14873 primosome assembly pr 89.3 0.89 1.9E-05 56.4 7.9 57 385-444 189-252 (665)
219 KOG0948 Nuclear exosomal RNA h 88.8 0.94 2E-05 55.0 7.0 41 271-318 126-166 (1041)
220 COG5243 HRD1 HRD ubiquitin lig 88.6 0.29 6.3E-06 54.3 2.6 50 678-730 282-344 (491)
221 TIGR00604 rad3 DNA repair heli 88.6 3.2 6.9E-05 52.3 12.2 103 818-921 523-669 (705)
222 KOG0922 DEAH-box RNA helicase 88.5 2.9 6.4E-05 50.5 10.9 112 817-931 258-393 (674)
223 PRK07246 bifunctional ATP-depe 87.9 4.7 0.0001 51.6 13.1 43 273-318 244-286 (820)
224 KOG0297 TNF receptor-associate 87.2 0.33 7.1E-06 56.4 2.1 45 683-730 21-66 (391)
225 smart00491 HELICc2 helicase su 87.1 3.8 8.2E-05 40.7 9.3 71 829-901 3-84 (142)
226 PF06862 DUF1253: Protein of u 87.0 9 0.00019 45.1 13.6 109 818-927 301-414 (442)
227 KOG4265 Predicted E3 ubiquitin 87.0 0.3 6.5E-06 54.5 1.5 49 681-732 288-337 (349)
228 KOG1039 Predicted E3 ubiquitin 86.9 0.36 7.7E-06 54.6 2.1 48 681-730 159-220 (344)
229 PF09848 DUF2075: Uncharacteri 86.9 1.2 2.6E-05 51.2 6.5 20 301-320 6-25 (352)
230 PRK10536 hypothetical protein; 86.8 0.64 1.4E-05 50.7 3.9 39 274-319 59-97 (262)
231 KOG1814 Predicted E3 ubiquitin 85.9 0.49 1.1E-05 53.6 2.5 53 681-733 182-244 (445)
232 KOG3800 Predicted E3 ubiquitin 85.6 0.52 1.1E-05 51.2 2.3 47 685-733 2-53 (300)
233 KOG1734 Predicted RING-contain 85.1 0.36 7.7E-06 51.6 0.9 56 682-739 223-289 (328)
234 KOG3039 Uncharacterized conser 84.7 0.61 1.3E-05 49.2 2.4 49 682-733 220-272 (303)
235 KOG3039 Uncharacterized conser 84.4 0.52 1.1E-05 49.7 1.7 33 683-715 43-75 (303)
236 KOG1803 DNA helicase [Replicat 83.5 0.54 1.2E-05 56.0 1.5 44 271-320 182-225 (649)
237 PF06733 DEAD_2: DEAD_2; Inte 83.4 0.42 9.1E-06 49.0 0.5 17 429-445 116-132 (174)
238 KOG0828 Predicted E3 ubiquitin 83.3 0.56 1.2E-05 54.0 1.5 45 682-726 570-631 (636)
239 KOG0827 Predicted E3 ubiquitin 82.6 0.83 1.8E-05 51.2 2.5 52 683-736 4-61 (465)
240 PF12861 zf-Apc11: Anaphase-pr 82.2 1.4 3.1E-05 39.4 3.4 43 686-730 35-81 (85)
241 KOG0920 ATP-dependent RNA heli 80.4 5.3 0.00012 50.8 8.6 106 817-928 413-544 (924)
242 COG1643 HrpA HrpA-like helicas 79.9 8.4 0.00018 49.0 10.1 111 818-931 260-390 (845)
243 TIGR00631 uvrb excinuclease AB 79.4 7.5 0.00016 48.4 9.5 70 275-409 10-80 (655)
244 KOG0949 Predicted helicase, DE 79.4 2.7 6E-05 52.7 5.5 69 847-917 968-1037(1330)
245 PRK04296 thymidine kinase; Pro 77.5 2.5 5.4E-05 44.1 3.9 20 300-319 6-25 (190)
246 KOG1645 RING-finger-containing 77.1 0.59 1.3E-05 52.8 -0.9 57 683-742 4-67 (463)
247 KOG4739 Uncharacterized protei 77.1 1.2 2.5E-05 47.5 1.3 43 685-732 5-49 (233)
248 PF14447 Prok-RING_4: Prokaryo 76.0 1.6 3.4E-05 35.8 1.5 44 684-732 8-51 (55)
249 KOG2932 E3 ubiquitin ligase in 75.8 1.2 2.6E-05 48.6 1.0 42 683-729 90-132 (389)
250 PF14570 zf-RING_4: RING/Ubox 75.6 2.6 5.7E-05 33.7 2.6 43 686-730 1-47 (48)
251 KOG0924 mRNA splicing factor A 75.6 11 0.00023 46.0 8.6 116 817-935 563-704 (1042)
252 KOG1571 Predicted E3 ubiquitin 75.1 1.2 2.6E-05 50.0 0.8 44 682-731 304-347 (355)
253 PF04641 Rtf2: Rtf2 RING-finge 74.8 2.3 5E-05 46.7 3.0 49 681-733 111-163 (260)
254 KOG1812 Predicted E3 ubiquitin 74.0 1.8 3.8E-05 50.3 1.9 52 683-734 146-206 (384)
255 TIGR03117 cas_csf4 CRISPR-asso 71.7 33 0.00071 42.6 12.0 42 385-426 47-91 (636)
256 PRK11747 dinG ATP-dependent DN 68.5 3.6 7.8E-05 51.7 3.0 19 429-447 216-234 (697)
257 TIGR00595 priA primosomal prot 66.7 39 0.00085 40.9 11.2 93 769-893 6-99 (505)
258 KOG1805 DNA replication helica 65.9 24 0.00052 44.8 9.1 41 274-320 669-709 (1100)
259 KOG1815 Predicted E3 ubiquitin 65.6 5.2 0.00011 47.5 3.4 54 682-735 69-130 (444)
260 PRK05580 primosome assembly pr 64.1 45 0.00098 41.9 11.4 93 770-894 172-265 (679)
261 PF12340 DUF3638: Protein of u 63.6 18 0.00039 38.9 6.6 109 272-445 21-143 (229)
262 COG0653 SecA Preprotein transl 62.6 20 0.00044 45.1 7.8 112 770-914 411-533 (822)
263 TIGR00365 monothiol glutaredox 62.5 43 0.00094 30.8 8.2 56 819-874 13-74 (97)
264 KOG0923 mRNA splicing factor A 62.2 34 0.00075 41.8 9.1 101 818-926 474-604 (902)
265 KOG4275 Predicted E3 ubiquitin 62.1 2 4.3E-05 46.6 -0.8 42 683-731 300-342 (350)
266 PHA03096 p28-like protein; Pro 61.0 4.6 9.9E-05 44.8 1.7 34 684-717 179-220 (284)
267 PRK10917 ATP-dependent DNA hel 61.0 41 0.0009 42.3 10.3 73 819-892 312-388 (681)
268 KOG0825 PHD Zn-finger protein 60.9 1.7 3.8E-05 52.7 -1.7 47 684-733 124-173 (1134)
269 KOG0926 DEAH-box RNA helicase 60.8 11 0.00023 46.7 4.8 60 863-925 623-701 (1172)
270 PRK05298 excinuclease ABC subu 60.1 36 0.00077 42.6 9.5 73 272-409 10-83 (652)
271 PHA02533 17 large terminase pr 59.8 71 0.0015 38.9 11.7 42 271-319 56-97 (534)
272 KOG2979 Protein involved in DN 58.7 24 0.00051 38.2 6.4 46 682-727 175-222 (262)
273 KOG0337 ATP-dependent RNA heli 57.7 20 0.00043 41.5 5.9 55 386-444 92-152 (529)
274 TIGR00643 recG ATP-dependent D 55.7 50 0.0011 41.2 9.7 72 819-891 286-361 (630)
275 TIGR00376 DNA helicase, putati 55.3 33 0.00072 42.7 8.0 41 273-319 156-196 (637)
276 KOG0346 RNA helicase [RNA proc 54.4 16 0.00034 42.5 4.5 60 387-446 96-159 (569)
277 KOG0952 DNA/RNA helicase MER3/ 54.4 22 0.00047 45.5 6.0 61 382-444 971-1032(1230)
278 KOG4367 Predicted Zn-finger pr 53.9 6.4 0.00014 44.8 1.4 33 683-715 4-36 (699)
279 KOG2114 Vacuolar assembly/sort 53.7 11 0.00024 46.8 3.3 50 674-729 826-881 (933)
280 TIGR00604 rad3 DNA repair heli 52.5 34 0.00073 43.3 7.6 45 274-321 10-54 (705)
281 KOG4185 Predicted E3 ubiquitin 52.1 9.6 0.00021 42.6 2.4 45 684-730 4-54 (296)
282 cd03418 GRX_GRXb_1_3_like Glut 52.0 70 0.0015 27.2 7.4 59 819-877 1-60 (75)
283 cd03028 GRX_PICOT_like Glutare 51.6 63 0.0014 29.1 7.3 57 818-875 8-70 (90)
284 PF13607 Succ_CoA_lig: Succiny 49.1 62 0.0013 32.0 7.3 86 819-925 3-90 (138)
285 COG0464 SpoVK ATPases of the A 47.5 27 0.00059 42.0 5.5 45 274-318 249-298 (494)
286 COG4098 comFA Superfamily II D 46.6 38 0.00083 38.3 5.8 58 770-856 126-185 (441)
287 PRK14873 primosome assembly pr 45.8 86 0.0019 39.3 9.5 76 770-875 170-247 (665)
288 COG5219 Uncharacterized conser 44.4 13 0.00028 46.6 1.9 47 682-730 1468-1522(1525)
289 PF05876 Terminase_GpA: Phage 43.9 70 0.0015 39.2 8.2 48 266-319 9-56 (557)
290 PRK10824 glutaredoxin-4; Provi 43.7 99 0.0022 29.6 7.5 61 819-880 16-83 (115)
291 KOG0804 Cytoplasmic Zn-finger 42.9 10 0.00023 43.7 0.9 38 682-722 174-215 (493)
292 COG5194 APC11 Component of SCF 42.8 23 0.00049 31.3 2.7 26 697-723 50-75 (88)
293 TIGR00580 mfd transcription-re 41.5 1.2E+02 0.0026 39.5 10.2 74 819-893 502-579 (926)
294 PF10367 Vps39_2: Vacuolar sor 41.3 13 0.00028 34.5 1.1 30 682-711 77-108 (109)
295 COG1198 PriA Primosomal protei 41.2 67 0.0014 40.5 7.5 82 767-878 224-306 (730)
296 smart00744 RINGv The RING-vari 40.3 27 0.00059 28.0 2.7 39 685-723 1-47 (49)
297 COG2205 KdpD Osmosensitive K+ 39.9 1.6E+02 0.0035 37.3 10.2 82 511-600 100-184 (890)
298 PF13604 AAA_30: AAA domain; P 39.6 54 0.0012 34.3 5.6 40 274-318 1-40 (196)
299 KOG3579 Predicted E3 ubiquitin 39.6 11 0.00023 41.0 0.3 33 684-716 269-305 (352)
300 PF13245 AAA_19: Part of AAA d 39.4 78 0.0017 27.8 5.7 22 300-321 14-35 (76)
301 COG0653 SecA Preprotein transl 39.1 92 0.002 39.6 8.2 60 384-447 121-184 (822)
302 KOG0926 DEAH-box RNA helicase 39.0 28 0.0006 43.4 3.6 22 297-318 272-293 (1172)
303 PF05883 Baculo_RING: Baculovi 38.8 12 0.00025 36.7 0.4 32 682-713 25-65 (134)
304 KOG1493 Anaphase-promoting com 38.4 16 0.00035 32.0 1.1 43 686-730 34-80 (84)
305 KOG2817 Predicted E3 ubiquitin 38.2 21 0.00046 40.8 2.3 41 682-722 333-378 (394)
306 KOG0922 DEAH-box RNA helicase 37.9 97 0.0021 38.1 7.8 20 299-318 69-88 (674)
307 COG0553 HepA Superfamily II DN 37.3 4.1 8.9E-05 52.3 -4.0 80 820-916 445-524 (866)
308 COG5236 Uncharacterized conser 37.0 19 0.00042 40.1 1.7 47 682-730 60-107 (493)
309 cd05566 PTS_IIB_galactitol PTS 36.5 45 0.00097 29.9 3.8 55 386-442 2-58 (89)
310 COG2247 LytB Putative cell wal 36.3 82 0.0018 35.4 6.4 59 817-875 76-139 (337)
311 COG1643 HrpA HrpA-like helicas 35.6 1E+02 0.0023 39.5 8.1 20 299-318 68-87 (845)
312 TIGR02562 cas3_yersinia CRISPR 35.1 1.4E+02 0.0031 39.0 9.0 97 819-918 759-884 (1110)
313 PF10272 Tmpp129: Putative tra 35.0 27 0.00059 40.0 2.6 30 701-730 311-350 (358)
314 KOG0951 RNA helicase BRR2, DEA 33.4 1.1E+02 0.0025 40.3 7.7 57 384-445 1186-1247(1674)
315 KOG3002 Zn finger protein [Gen 33.2 29 0.00062 38.9 2.4 44 682-731 47-91 (299)
316 KOG3161 Predicted E3 ubiquitin 32.8 15 0.00033 44.1 0.2 36 685-723 13-52 (861)
317 PRK10689 transcription-repair 32.6 2E+02 0.0043 38.6 10.2 73 819-892 651-727 (1147)
318 cd05568 PTS_IIB_bgl_like PTS_I 32.5 67 0.0015 28.1 4.3 53 386-442 2-56 (85)
319 PF00265 TK: Thymidine kinase; 31.6 1.3E+02 0.0029 30.9 6.9 19 300-318 5-23 (176)
320 PRK00149 dnaA chromosomal repl 30.9 1.9E+02 0.004 34.5 8.9 21 299-319 151-171 (450)
321 PTZ00062 glutaredoxin; Provisi 30.8 2.6E+02 0.0057 29.6 9.0 59 819-878 114-178 (204)
322 cd03031 GRX_GRX_like Glutaredo 30.6 1.8E+02 0.0039 29.1 7.3 47 819-865 1-54 (147)
323 cd00133 PTS_IIB PTS_IIB: subun 30.3 97 0.0021 26.5 4.9 53 387-442 2-56 (84)
324 COG0626 MetC Cystathionine bet 29.1 1.3E+02 0.0029 35.1 7.0 91 770-914 84-175 (396)
325 cd05563 PTS_IIB_ascorbate PTS_ 28.2 1.3E+02 0.0029 26.6 5.4 51 387-441 2-54 (86)
326 TIGR00362 DnaA chromosomal rep 28.1 2.6E+02 0.0055 32.7 9.3 20 300-319 140-159 (405)
327 KOG4175 Tryptophan synthase al 27.8 4.2E+02 0.0092 27.9 9.3 135 772-922 77-213 (268)
328 COG1199 DinG Rad3-related DNA 27.5 1.6E+02 0.0034 36.8 7.9 47 272-321 13-59 (654)
329 COG5175 MOT2 Transcriptional r 26.4 48 0.001 37.0 2.5 54 680-735 11-68 (480)
330 COG4626 Phage terminase-like p 26.4 2.8E+02 0.0061 33.7 9.1 49 272-320 59-110 (546)
331 PRK10329 glutaredoxin-like pro 26.0 3.5E+02 0.0077 23.9 7.7 55 819-875 2-57 (81)
332 PF00462 Glutaredoxin: Glutare 25.3 3.7E+02 0.0079 21.7 7.3 53 820-872 1-54 (60)
333 cd03027 GRX_DEP Glutaredoxin ( 25.0 3.5E+02 0.0076 22.9 7.4 59 819-878 2-61 (73)
334 COG2804 PulE Type II secretory 24.6 3.2E+02 0.007 32.9 9.0 59 507-569 323-382 (500)
335 KOG1807 Helicases [Replication 23.7 2.3E+02 0.005 35.7 7.7 43 272-321 376-418 (1025)
336 PHA00012 I assembly protein 23.6 82 0.0018 35.8 3.8 63 513-575 83-151 (361)
337 COG4581 Superfamily II RNA hel 23.6 1.8E+02 0.004 38.0 7.3 104 271-447 116-220 (1041)
338 cd06533 Glyco_transf_WecG_TagA 23.5 4.6E+02 0.0099 26.7 9.1 58 819-877 48-108 (171)
339 PRK07952 DNA replication prote 23.4 2.5E+02 0.0053 30.6 7.4 43 277-319 79-122 (244)
340 KOG0925 mRNA splicing factor A 22.8 3.1E+02 0.0066 32.9 8.1 108 818-931 254-390 (699)
341 cd01121 Sms Sms (bacterial rad 22.6 3.1E+02 0.0067 31.9 8.4 19 300-318 86-104 (372)
342 COG1110 Reverse gyrase [DNA re 22.6 3E+02 0.0064 36.0 8.5 61 818-879 126-192 (1187)
343 PRK10638 glutaredoxin 3; Provi 22.5 3.5E+02 0.0076 23.6 7.1 56 819-875 3-59 (83)
344 COG0514 RecQ Superfamily II DN 22.3 1.7E+02 0.0037 36.0 6.4 60 819-879 59-118 (590)
345 PRK07993 DNA polymerase III su 22.0 4.2E+02 0.0091 30.3 9.2 49 274-322 2-50 (334)
346 TIGR00614 recQ_fam ATP-depende 21.8 3.1E+02 0.0067 32.8 8.5 60 819-879 53-112 (470)
347 KOG2340 Uncharacterized conser 21.4 1.5E+02 0.0032 35.7 5.4 107 819-927 554-667 (698)
348 KOG0298 DEAD box-containing he 21.1 47 0.001 43.5 1.5 268 299-650 377-693 (1394)
349 PF03808 Glyco_tran_WecB: Glyc 20.6 5.6E+02 0.012 26.1 9.0 59 819-878 50-111 (172)
350 cd05567 PTS_IIB_mannitol PTS_I 20.5 1.7E+02 0.0036 26.2 4.5 54 386-444 2-57 (87)
351 PRK11054 helD DNA helicase IV; 20.5 1.5E+02 0.0033 37.3 5.7 40 273-321 195-234 (684)
352 cd01524 RHOD_Pyr_redox Member 20.2 1.5E+02 0.0033 26.2 4.3 34 819-852 53-86 (90)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=9.3e-102 Score=841.66 Aligned_cols=542 Identities=39% Similarity=0.648 Sum_probs=452.0
Q ss_pred ccCCCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccC
Q 002077 263 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL 342 (972)
Q Consensus 263 e~~~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (972)
.+.+|.++ -++|+|||+++|+|+..+|.+. ..|||||||||+|||||+|||++..
T Consensus 174 ~aeqP~dl-ii~LL~fQkE~l~Wl~~QE~Ss--~~GGiLADEMGMGKTIQtIaLllae---------------------- 228 (791)
T KOG1002|consen 174 RAEQPDDL-IIPLLPFQKEGLAWLTSQEESS--VAGGILADEMGMGKTIQTIALLLAE---------------------- 228 (791)
T ss_pred cccCcccc-eecchhhhHHHHHHHHHhhhhh--hccceehhhhccchHHHHHHHHHhc----------------------
Confidence 35667775 7899999999999999999875 5999999999999999999999851
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCC
Q 002077 343 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS 422 (972)
Q Consensus 343 ~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~ 422 (972)
...++||||||.-.+.||.+||++|.. +.++|++|||.+
T Consensus 229 ---------------------------------------~~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~ 267 (791)
T KOG1002|consen 229 ---------------------------------------VDRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK 267 (791)
T ss_pred ---------------------------------------cccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence 112459999999999999999999987 389999999999
Q ss_pred CCCChhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCccc
Q 002077 423 RTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDY 502 (972)
Q Consensus 423 r~~~~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~ 502 (972)
|.++..+|..||||+|||.++.+++.++ .+| |. +|. ..+.
T Consensus 268 R~~nikel~~YDvVLTty~vvEs~yRk~--------------~~G----fr--------------rKn--------gv~k 307 (791)
T KOG1002|consen 268 RDKNIKELMNYDVVLTTYAVVESVYRKQ--------------DYG----FR--------------RKN--------GVDK 307 (791)
T ss_pred ccCCHHHhhcCcEEEEecHHHHHHHHhc--------------ccc----cc--------------ccC--------Cccc
Confidence 9999999999999999999999887652 122 10 011 1223
Q ss_pred CCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCc----------------------------
Q 002077 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNS---------------------------- 552 (972)
Q Consensus 503 ~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~---------------------------- 552 (972)
..++||.+.|.||||||||.||++++.+++|+++|.+.+ .+.+||+++.-
T Consensus 308 e~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~ 387 (791)
T KOG1002|consen 308 EKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASL 387 (791)
T ss_pred ccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccccc
Confidence 446899999999999999999999999999999999987 23345544321
Q ss_pred -----------------------------------------HHHHHHHHHHHHHHHhhhccccccCCCCcccCCCCeEEE
Q 002077 553 -----------------------------------------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 591 (972)
Q Consensus 553 -----------------------------------------~~~~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~ 591 (972)
..+|...+.+|..|||||||-.-.+. +-|||+.+.+
T Consensus 388 ~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdD---LgLPPRiv~v 464 (791)
T KOG1002|consen 388 DWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADD---LGLPPRIVTV 464 (791)
T ss_pred ceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccc---cCCCccceee
Confidence 23346678899999999999654432 6899999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHH
Q 002077 592 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDM 671 (972)
Q Consensus 592 ~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~ 671 (972)
..--|+++|..+|+.+...+++.|+.|+.+|.+..||++||.++.||||+++||.|+.-.... +++.+
T Consensus 465 RrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~-----------n~~~e- 532 (791)
T KOG1002|consen 465 RRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANA-----------NLPDE- 532 (791)
T ss_pred ehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhc-----------CCCcc-
Confidence 999999999999999999999999999999999999999999999999999999998742111 11111
Q ss_pred HHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcC----CCCCCCCccccccccccccccccccccccCC
Q 002077 672 LIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG----DDNMCPAPRCKEQLGADVVFSKTTLKNCVSD 747 (972)
Q Consensus 672 ~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~----~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~ 747 (972)
..+..+|.+|.|+.++++.+.|.|.||.-|+.+|+.+ ..-.|| .|...+..+. +...+......
T Consensus 533 --------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP--~C~i~LsiDl--se~alek~~l~ 600 (791)
T KOG1002|consen 533 --------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP--VCHIGLSIDL--SEPALEKTDLK 600 (791)
T ss_pred --------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc--cccccccccc--cchhhhhcchh
Confidence 1256789999999999999999999999999998752 334677 5766665542 11111100000
Q ss_pred CCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecch
Q 002077 748 DGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWT 827 (972)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft 827 (972)
.... ...-..+....|..|+||++|++.|.-+++.+. ..|.|||||||
T Consensus 601 ~Fk~-----sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~---------------------------t~KsIVFSQFT 648 (791)
T KOG1002|consen 601 GFKA-----SSILNRINMDDWQSSTKIEALVEELYFLRERDR---------------------------TAKSIVFSQFT 648 (791)
T ss_pred hhhh-----HHHhhhcchhhhcchhHHHHHHHHHHHHHHccc---------------------------chhhhhHHHHH
Confidence 0000 000011233467899999999999999888765 56999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHh
Q 002077 828 RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAV 907 (972)
Q Consensus 828 ~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAi 907 (972)
+|||+|+..|.++|+.++.|.|+|++..|...|+.|.+++.++|||+|++|||+.|||+.|++||+|||||||++|.||.
T Consensus 649 SmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~ 728 (791)
T KOG1002|consen 649 SMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQ 728 (791)
T ss_pred HHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhc
Q 002077 908 DRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 971 (972)
Q Consensus 908 gRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~ 971 (972)
||+|||||.+||.|.||++++|||++|++||++|..||++.+|.++ .-..+|+.|||++||.
T Consensus 729 DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde--~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 729 DRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDE--EAISKLTEEDMQFLFN 790 (791)
T ss_pred hhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcH--HHHHhcCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999874 3457999999999995
No 2
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.9e-83 Score=722.95 Aligned_cols=513 Identities=38% Similarity=0.622 Sum_probs=403.5
Q ss_pred cCCCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCC
Q 002077 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (972)
Q Consensus 264 ~~~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (972)
++-|.+ +.+.|+|||+.|+.||+.+|.. .+.|||||||||||||+++|++|+..+......
T Consensus 316 te~P~g-~~v~LmpHQkaal~Wl~wRE~q--~~~GGILaddmGLGKTlsmislil~qK~~~~~~---------------- 376 (901)
T KOG4439|consen 316 TETPDG-LKVELMPHQKAALRWLLWRESQ--PPSGGILADDMGLGKTLSMISLILHQKAARKAR---------------- 376 (901)
T ss_pred cCCCCc-ceeecchhhhhhhhhhcccccC--CCCCcccccccccccchHHHHHHHHHHHHHHhh----------------
Confidence 344555 5999999999999999999986 469999999999999999999999766531100
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCC-
Q 002077 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS- 422 (972)
Q Consensus 344 ~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~- 422 (972)
+ .....+.+||||||+||+.||..|+++.+..+ .|+|++|||.+
T Consensus 377 ----------~------------------------~~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n-~LsV~~~HG~n~ 421 (901)
T KOG4439|consen 377 ----------E------------------------KKGESASKTLIICPASLIHQWEAEVARRLEQN-ALSVYLYHGPNK 421 (901)
T ss_pred ----------c------------------------ccccccCCeEEeCcHHHHHHHHHHHHHHHhhc-ceEEEEecCCcc
Confidence 0 00011224999999999999999999999876 89999999999
Q ss_pred CCCChhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCccc
Q 002077 423 RTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDY 502 (972)
Q Consensus 423 r~~~~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~ 502 (972)
|.-.+..|.+||||||||..+.+.- +++. +.++
T Consensus 422 r~i~~~~L~~YDvViTTY~lva~~~-------~~e~-----~~~~----------------------------------- 454 (901)
T KOG4439|consen 422 REISAKELRKYDVVITTYNLVANKP-------DDEL-----EEGK----------------------------------- 454 (901)
T ss_pred ccCCHHHHhhcceEEEeeeccccCC-------chhh-----hccc-----------------------------------
Confidence 6778899999999999999997721 0000 0111
Q ss_pred CCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH------------------------
Q 002077 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY------------------------ 556 (972)
Q Consensus 503 ~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~------------------------ 556 (972)
...+|..+.|.||||||||+|||++|+.+.|+|.|++.. .+++|||+|+..+.|
T Consensus 455 ~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~ 534 (901)
T KOG4439|consen 455 NSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNM 534 (901)
T ss_pred CccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCc
Confidence 346899999999999999999999999999999999987 567999999876654
Q ss_pred -----HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhh-----------
Q 002077 557 -----KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD----------- 620 (972)
Q Consensus 557 -----~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~----------- 620 (972)
.+|.-+.++.||||||.....+.++++||.+.++++.++|+.+|.+.|+.+.+.++..|+.++.
T Consensus 535 s~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~ 614 (901)
T KOG4439|consen 535 SKGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGY 614 (901)
T ss_pred cccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCc
Confidence 5666778899999999998778899999999999999999999999999999998888866421
Q ss_pred -------------------------cCCcchhHHHHHHHHHHHHhhcCCCcccccccc-cc---cccchHHHhhcCChHH
Q 002077 621 -------------------------AGTVNQNYANILLMLLRLRQACDHPLLVKEYDF-DS---VGKISGEMAKRLPRDM 671 (972)
Q Consensus 621 -------------------------~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~-~~---~~~~~~e~~~~l~~e~ 671 (972)
.|...+...+||.+|+||||+||||.+...... +. .+....+. +.+..+.
T Consensus 615 ~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde-~~~e~~~ 693 (901)
T KOG4439|consen 615 QSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDE-EQLEEDN 693 (901)
T ss_pred cccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhh-hhhhhhH
Confidence 122233457799999999999999977654221 11 11111111 1111111
Q ss_pred HHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCC
Q 002077 672 LIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGG 751 (972)
Q Consensus 672 ~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~ 751 (972)
+ ..++... .|.|-.- +|. +.
T Consensus 694 l----~el~k~~--------------~T~~~~D--------------------~~e--------------------d~-- 713 (901)
T KOG4439|consen 694 L----AELEKND--------------ETDCSDD--------------------NCE--------------------DL-- 713 (901)
T ss_pred H----Hhhhhcc--------------ccccccc--------------------ccc--------------------cc--
Confidence 1 1111100 0111000 000 00
Q ss_pred CCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHH
Q 002077 752 SPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLD 831 (972)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld 831 (972)
+.+ -.....+..+.|.|+..+++.|..++... .+|+||.|||+++|+
T Consensus 714 ----p~~-~~~q~Fe~~r~S~Ki~~~l~~le~i~~~s----------------------------keK~viVSQwtsvLn 760 (901)
T KOG4439|consen 714 ----PTA-FPDQAFEPDRPSCKIAMVLEILETILTSS----------------------------KEKVVIVSQWTSVLN 760 (901)
T ss_pred ----ccc-chhhhcccccchhHHHHHHHHHHHHhhcc----------------------------cceeeehhHHHHHHH
Confidence 000 00011334458999999999999884322 359999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCC-CeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhh
Q 002077 832 LVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRA 910 (972)
Q Consensus 832 ~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~-~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi 910 (972)
+++..|.+.|+.|..++|....++|+.+|+.|+... +.+|||+|+.|||+||||+.|||+|++|+.|||+.|+||.|||
T Consensus 761 iv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRI 840 (901)
T KOG4439|consen 761 IVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRI 840 (901)
T ss_pred HHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999865 4999999999999999999999999999999999999999999
Q ss_pred cccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhcC
Q 002077 911 HRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972 (972)
Q Consensus 911 ~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~~ 972 (972)
+|+||+++|+||||+++||||+||..+|++|.++...++..... ..++.||..||+.||++
T Consensus 841 YR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~t-r~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 841 YRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSAT-RKMNKLTLADLKKLFGL 901 (901)
T ss_pred HHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccc-cccccccHHHHHHHhCC
Confidence 99999999999999999999999999999999999999964432 35789999999999985
No 3
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.2e-81 Score=742.31 Aligned_cols=532 Identities=46% Similarity=0.708 Sum_probs=450.1
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccc
Q 002077 246 ERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 325 (972)
Q Consensus 246 ~~~~~~~~~~~l~~~~~e~~~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~ 325 (972)
.+.+|.++...+.+...+...|.+.++++ |++.+.||+..+.....++|||||||||+|||+++|++++..+...+
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~ 181 (674)
T KOG1001|consen 106 NLPIFKAAKWEIILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSK 181 (674)
T ss_pred cchhhhhhhhhhhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCc
Confidence 45567777766666666666676644554 66777777766666667899999999999999999999997554310
Q ss_pred cchhhhccccccccccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHh
Q 002077 326 KSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELED 405 (972)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k 405 (972)
+ ..+....++||||||.+++.||..|+ .
T Consensus 182 ------------~---------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-e 209 (674)
T KOG1001|consen 182 ------------E---------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-E 209 (674)
T ss_pred ------------c---------------------------------------hhhccccCceeEecchHHHHHHHHHH-h
Confidence 0 00124568899999999999999999 5
Q ss_pred hCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhcccccc
Q 002077 406 KVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVS 485 (972)
Q Consensus 406 ~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~ 485 (972)
.....+.+.+++||| |.++..++..||||||||.++++
T Consensus 210 k~~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~---------------------------------------- 247 (674)
T KOG1001|consen 210 KVTEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN---------------------------------------- 247 (674)
T ss_pred ccCCccceEEEEecc--cccccchhcCCceEEeeHHHhhc----------------------------------------
Confidence 556666999999999 89999999999999999999974
Q ss_pred ccccCCCCCCCCCCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccC---------------
Q 002077 486 KRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPI--------------- 548 (972)
Q Consensus 486 kk~k~~~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi--------------- 548 (972)
++|..+.|+|||+||||+|+|++++.+++|+.|.+.+ .+.++|+
T Consensus 248 -------------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~ 308 (674)
T KOG1001|consen 248 -------------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLE 308 (674)
T ss_pred -------------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhh
Confidence 3578899999999999999999999999999999888 2234444
Q ss_pred ------------------cCCc-HHHHHHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHH
Q 002077 549 ------------------SRNS-LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609 (972)
Q Consensus 549 ------------------~~~~-~~~~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~ 609 (972)
.++. .+++++++.+|..+++||||...++|.|++.|||+++.+..++++..|+.+|..+..
T Consensus 309 ~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~ 388 (674)
T KOG1001|consen 309 IHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKA 388 (674)
T ss_pred cCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhh
Confidence 4444 567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccC
Q 002077 610 DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVC 689 (972)
Q Consensus 610 ~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC 689 (972)
..+.+|..+...|++..+|+.++.+++||||+|+||.++...........+.. .....+..++..+ ..|.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~-------~~~~~~i~~l~~~-~~c~ic 460 (674)
T KOG1001|consen 389 NSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAA-------ALIIRLIVDLSVS-HWCHIC 460 (674)
T ss_pred hhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccc-------hHHHHHHHHHhhc-cccccc
Confidence 99999999999999999999999999999999999999875433222111111 1112255556555 899999
Q ss_pred CCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcc
Q 002077 690 SDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEY 769 (972)
Q Consensus 690 ~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (972)
.+ ++.++++.|||.||.+|+.+.+....+. |++.|+..+.....++...+..+.... ..
T Consensus 461 ~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~l~s~~~~~~~~~~~-------------------~~ 519 (674)
T KOG1001|consen 461 CD-LDSFFITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKKLLSANPLPSIINDL-------------------LP 519 (674)
T ss_pred cc-cccceeecccchHHHHHHHhccccccCC-CCcHHHHHHHHHHHhhcccccchhhhc-------------------cc
Confidence 99 9999999999999999999999887776 677999999888877766554433220 00
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.|+|+.++++.|+. .+ +. .. .|+||||||+.++++++..|...++.+.+++|
T Consensus 520 ~s~ki~~~~~~l~~-~~-~s-------------------------~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g 571 (674)
T KOG1001|consen 520 ESSKIYAFLKILQA-KE-MS-------------------------EQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDG 571 (674)
T ss_pred hhhhhHHHHHHHhh-cc-CC-------------------------CC-CceeeehhHHHHHHHhhhhhhhcccccchhhh
Confidence 68999999999982 11 11 11 19999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dT 929 (972)
.|+...|.+.+..|..++.++|||+|++|||+||||++|+|||++||||||+.|+|||+||||+||+++|.|+||++++|
T Consensus 572 ~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dt 651 (674)
T KOG1001|consen 572 EMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDT 651 (674)
T ss_pred hhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 002077 930 VEDRILKLQDDKRKMVASAFGE 951 (972)
Q Consensus 930 IEe~Il~lq~~K~~li~~a~g~ 951 (972)
|||||+++|++|+.+++.|+|+
T Consensus 652 veer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 652 VEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred cHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999986
No 4
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=4.3e-79 Score=695.03 Aligned_cols=425 Identities=32% Similarity=0.506 Sum_probs=364.5
Q ss_pred CCCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCC
Q 002077 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (972)
Q Consensus 265 ~~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (972)
+.|..+....||+||.+||.|++++... .-+|||||+||||||+|+||++.+.+..
T Consensus 158 ~sP~~v~~g~lr~YQveGlnWLi~l~en---gingILaDEMGLGKTlQtIs~l~yl~~~--------------------- 213 (971)
T KOG0385|consen 158 DSPSYVKGGELRDYQLEGLNWLISLYEN---GINGILADEMGLGKTLQTISLLGYLKGR--------------------- 213 (971)
T ss_pred CCchhhcCCccchhhhccHHHHHHHHhc---CcccEeehhcccchHHHHHHHHHHHHHh---------------------
Confidence 4677776689999999999999988764 4569999999999999999999987764
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCC
Q 002077 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT 424 (972)
Q Consensus 345 d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~ 424 (972)
....+|.||+||.|++.||.+||.+|+| .+++++|+|.+..
T Consensus 214 ------------------------------------~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~e 254 (971)
T KOG0385|consen 214 ------------------------------------KGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEE 254 (971)
T ss_pred ------------------------------------cCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHH
Confidence 1334789999999999999999999998 7999999998744
Q ss_pred CC-----hhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCC
Q 002077 425 KD-----PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSS 499 (972)
Q Consensus 425 ~~-----~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~ 499 (972)
+. ...-..+||+||||+++.++
T Consensus 255 R~~~~r~~~~~~~fdV~iTsYEi~i~d----------------------------------------------------- 281 (971)
T KOG0385|consen 255 RAALRRDIMLPGRFDVCITSYEIAIKD----------------------------------------------------- 281 (971)
T ss_pred HHHHHHHhhccCCCceEeehHHHHHhh-----------------------------------------------------
Confidence 32 11224899999999999764
Q ss_pred cccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH---------------------
Q 002077 500 IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY--------------------- 556 (972)
Q Consensus 500 ~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~--------------------- 556 (972)
...|..+.|.++||||||+|||.+|..++.++.+...+ ..++||++||..+.|
T Consensus 282 ----k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF 357 (971)
T KOG0385|consen 282 ----KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWF 357 (971)
T ss_pred ----HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHH
Confidence 13578899999999999999999999999999999888 556999998854432
Q ss_pred ------------HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 002077 557 ------------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTV 624 (972)
Q Consensus 557 ------------~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~ 624 (972)
.+|..+|+||+|||.|.+|.. .|||+++..+++.|+..|+++|..+...-. ......+..
T Consensus 358 ~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~-----sLppKkE~~iyvgms~mQkk~Y~~iL~kdl---~~~n~~~~~ 429 (971)
T KOG0385|consen 358 DFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK-----SLPPKKELIIYVGMSSMQKKWYKAILMKDL---DALNGEGKG 429 (971)
T ss_pred cccccccCHHHHHHHHhhhhHHHHHHHHHhHhh-----cCCCcceeeEeccchHHHHHHHHHHHHhcc---hhhcccccc
Confidence 678999999999999999974 799999999999999999999998866432 233333322
Q ss_pred chhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcc
Q 002077 625 NQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHV 704 (972)
Q Consensus 625 ~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~ 704 (972)
....++.+++.||++|+||+|+.+......- +.--|
T Consensus 430 --~k~kL~NI~mQLRKccnHPYLF~g~ePg~py-----------------------------------------ttdeh- 465 (971)
T KOG0385|consen 430 --EKTKLQNIMMQLRKCCNHPYLFDGAEPGPPY-----------------------------------------TTDEH- 465 (971)
T ss_pred --hhhHHHHHHHHHHHhcCCccccCCCCCCCCC-----------------------------------------CcchH-
Confidence 3567788899999999999999874321000 00000
Q ss_pred hhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhh
Q 002077 705 FCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQ 784 (972)
Q Consensus 705 fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~ 784 (972)
-...|+|+..|-++|..+
T Consensus 466 --------------------------------------------------------------Lv~nSGKm~vLDkLL~~L 483 (971)
T KOG0385|consen 466 --------------------------------------------------------------LVTNSGKMLVLDKLLPKL 483 (971)
T ss_pred --------------------------------------------------------------HHhcCcceehHHHHHHHH
Confidence 012688999999999999
Q ss_pred ccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhh
Q 002077 785 CELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 864 (972)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~ 864 (972)
.+.|+ |||||||++.|||+|+.++..+++.|+||||+++-++|..+|+.|+
T Consensus 484 k~~Gh-----------------------------RVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn 534 (971)
T KOG0385|consen 484 KEQGH-----------------------------RVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFN 534 (971)
T ss_pred HhCCC-----------------------------eEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcC
Confidence 99888 9999999999999999999999999999999999999999999999
Q ss_pred cCC-CeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHH
Q 002077 865 TDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRK 943 (972)
Q Consensus 865 ~~~-~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~ 943 (972)
.++ +.+|||+||+|||+|+||++|+.||+||..|||....||.+|||||||+++|.||||++++||||+|+++...|.+
T Consensus 535 ~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 535 APPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred CCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 865 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q 002077 944 MVASAFGED 952 (972)
Q Consensus 944 li~~a~g~~ 952 (972)
|-+-+++..
T Consensus 615 Ld~~VIq~g 623 (971)
T KOG0385|consen 615 LDKLVIQQG 623 (971)
T ss_pred hhhhhhccC
Confidence 988888764
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-77 Score=686.33 Aligned_cols=452 Identities=31% Similarity=0.489 Sum_probs=366.1
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
.++|.+||+.||+|+.-+.... ..||||||||||||+|+||++.+++..
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~---l~gILADEMGLGKTiQvIaFlayLkq~---------------------------- 445 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKK---LNGILADEMGLGKTIQVIAFLAYLKQI---------------------------- 445 (941)
T ss_pred CCcccchhhhhHHHHHHHHHcc---ccceehhhccCcchhHHHHHHHHHHHc----------------------------
Confidence 4579999999999999877754 458999999999999999999987754
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCC--h--
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD--P-- 427 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~--~-- 427 (972)
+..+|.|||||+|.+.||.+||.+||| .|+|..|||+...+. .
T Consensus 446 ------------------------------g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 446 ------------------------------GNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ------------------------------CCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 335779999999999999999999999 899999999973331 1
Q ss_pred --hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCC
Q 002077 428 --VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCG 505 (972)
Q Consensus 428 --~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~ 505 (972)
..-..|||++|||..+.+.- .+..
T Consensus 493 i~~~~~~ydVllTTY~la~~~k------------------------------------------------------dDRs 518 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASSK------------------------------------------------------DDRS 518 (941)
T ss_pred HhccCCCccEEEEEeecccCCh------------------------------------------------------HHHH
Confidence 11238999999999987521 0223
Q ss_pred CCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH---------------------------
Q 002077 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY--------------------------- 556 (972)
Q Consensus 506 ~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~--------------------------- 556 (972)
.|...+|++||.||||.+||..|.+++-+..+.|.. .+++||++||..+.+
T Consensus 519 flk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~ 598 (941)
T KOG0389|consen 519 FLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT 598 (941)
T ss_pred HHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC
Confidence 577888999999999999999999999999999988 667999998855432
Q ss_pred ---------------HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 002077 557 ---------------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621 (972)
Q Consensus 557 ---------------~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~ 621 (972)
.|-..|+.||+|||.|.+|++ .||||...+.+|+|++.|+.+|..+.+............
T Consensus 599 ~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~-----~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~n 673 (941)
T KOG0389|consen 599 SDGDIENALLSQERISRAKTIMKPFILRRLKSQVLK-----QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKN 673 (941)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccc
Confidence 344678999999999999986 899999999999999999999999877663222221111
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChH---------HHH---HHHHhhcccccccccC
Q 002077 622 GTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRD---------MLI---DLLSRLETSSAICCVC 689 (972)
Q Consensus 622 g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e---------~~~---~ll~~le~~~~~C~iC 689 (972)
....+ -..|++||++++||.|...++.+.. ...|++.+-.+ -+. .++..++
T Consensus 674 -s~~~~----~~vlmqlRK~AnHPLL~R~~Y~de~---L~~mak~il~e~ay~~~n~qyIfEDm~~msDfe--------- 736 (941)
T KOG0389|consen 674 -SELKS----GNVLMQLRKAANHPLLFRSIYTDEK---LRKMAKRILNEPAYKKANEQYIFEDMEVMSDFE--------- 736 (941)
T ss_pred -ccccc----chHHHHHHHHhcChhHHHHhccHHH---HHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHH---------
Confidence 11111 3357999999999999998776531 12233322111 011 1111111
Q ss_pred CCCCCCcccccCCcchhhh--hHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCC
Q 002077 690 SDPPEDSVVTMCGHVFCYQ--CASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDN 767 (972)
Q Consensus 690 ~d~~~~~vit~CgH~fC~~--Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (972)
.|.+|.+ |+.. .......
T Consensus 737 ------------lHqLc~~f~~~~~------------------------------------------------f~L~d~~ 756 (941)
T KOG0389|consen 737 ------------LHQLCCQFRHLSK------------------------------------------------FQLKDDL 756 (941)
T ss_pred ------------HHHHHHhcCCCcc------------------------------------------------cccCCch
Confidence 3555532 1111 1112345
Q ss_pred cccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEE
Q 002077 768 EYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRL 847 (972)
Q Consensus 768 ~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~l 847 (972)
|..|+|++.|-++|.++.+.|+ |||||||||.|||+|+..|+-.++.|+||
T Consensus 757 ~mdSgK~r~L~~LLp~~k~~G~-----------------------------RVLiFSQFTqmLDILE~~L~~l~~~ylRL 807 (941)
T KOG0389|consen 757 WMDSGKCRKLKELLPKIKKKGD-----------------------------RVLIFSQFTQMLDILEVVLDTLGYKYLRL 807 (941)
T ss_pred hhhhhhHhHHHHHHHHHhhcCC-----------------------------EEEEeeHHHHHHHHHHHHHHhcCceEEee
Confidence 6789999999999999999887 99999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecC
Q 002077 848 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927 (972)
Q Consensus 848 dGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~ 927 (972)
||++....|+.+|++|+.+.+++|||+||||||.||||++||+||++|..+||....||.|||||+||+|||+|||||++
T Consensus 808 DGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk 887 (941)
T KOG0389|consen 808 DGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITK 887 (941)
T ss_pred cCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCC
Q 002077 928 DTVEDRILKLQDDKRKMVASAFGED 952 (972)
Q Consensus 928 dTIEe~Il~lq~~K~~li~~a~g~~ 952 (972)
+||||.|+++.+.|..|=..+.+..
T Consensus 888 ~TIEE~I~~lA~~KL~Le~~lt~~~ 912 (941)
T KOG0389|consen 888 STIEEGILRLAKTKLALEADLTEDG 912 (941)
T ss_pred CcHHHHHHHHHHHhhhhhhhhccCc
Confidence 9999999999999998766665443
No 6
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6e-77 Score=681.48 Aligned_cols=442 Identities=30% Similarity=0.468 Sum_probs=367.5
Q ss_pred cccCCCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhcccccccccc
Q 002077 262 VEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALN 341 (972)
Q Consensus 262 ~e~~~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~ 341 (972)
..+.+|..+ ...|+|||+.||.||+.... +..|||||||||||||||+|+++......
T Consensus 194 ~~~~vPg~I-~~~Lf~yQreGV~WL~~L~~---q~~GGILgDeMGLGKTIQiisFLaaL~~S------------------ 251 (923)
T KOG0387|consen 194 GGFKVPGFI-WSKLFPYQREGVQWLWELYC---QRAGGILGDEMGLGKTIQIISFLAALHHS------------------ 251 (923)
T ss_pred ccccccHHH-HHHhhHHHHHHHHHHHHHHh---ccCCCeecccccCccchhHHHHHHHHhhc------------------
Confidence 346778765 55799999999999998876 56899999999999999999999864431
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCC
Q 002077 342 LDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG 421 (972)
Q Consensus 342 ~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~ 421 (972)
....+|+|||||++|+.||.+||.+|.+ .++|.+|||.
T Consensus 252 ---------------------------------------~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t 289 (923)
T KOG0387|consen 252 ---------------------------------------GKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGT 289 (923)
T ss_pred ---------------------------------------ccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecC
Confidence 0223779999999999999999999998 7999999998
Q ss_pred CCCC-----------C----hhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccc
Q 002077 422 SRTK-----------D----PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSK 486 (972)
Q Consensus 422 ~r~~-----------~----~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~k 486 (972)
.... + ........|.||||+.++..
T Consensus 290 ~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---------------------------------------- 329 (923)
T KOG0387|consen 290 GSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---------------------------------------- 329 (923)
T ss_pred CcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc----------------------------------------
Confidence 7631 0 11223456899999998752
Q ss_pred cccCCCCCCCCCCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcccee--eccCcCCcHHHH--------
Q 002077 487 RGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGY-------- 556 (972)
Q Consensus 487 k~k~~~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~~~i--~tPi~~~~~~~~-------- 556 (972)
...+..+.|++|||||+|.|||++|+.+.+|+.++..++.| +|||+|+..+.+
T Consensus 330 -----------------~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~P 392 (923)
T KOG0387|consen 330 -----------------GDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFP 392 (923)
T ss_pred -----------------CcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccC
Confidence 12477889999999999999999999999999999988544 899998854432
Q ss_pred -------------------------------------HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHH
Q 002077 557 -------------------------------------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKE 599 (972)
Q Consensus 557 -------------------------------------~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~ 599 (972)
..|+.+++|++|||+|.++.. +.||.|.+.++.|.||+.
T Consensus 393 G~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----~~Lp~K~E~VlfC~LT~~ 468 (923)
T KOG0387|consen 393 GKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----LKLPKKEEIVLFCRLTKL 468 (923)
T ss_pred CcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCccceEEEEeccHH
Confidence 457889999999999999864 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhh
Q 002077 600 EWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRL 679 (972)
Q Consensus 600 Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~l 679 (972)
||.+|+.+.+... +...+ .|. .++|..+.-||.+|+||.|+.+........
T Consensus 469 QR~~Y~~fl~s~~--v~~i~-ng~-----~~~l~Gi~iLrkICnHPdll~~~~~~~~~~--------------------- 519 (923)
T KOG0387|consen 469 QRRLYQRFLNSSE--VNKIL-NGK-----RNCLSGIDILRKICNHPDLLDRRDEDEKQG--------------------- 519 (923)
T ss_pred HHHHHHHHhhhHH--HHHHH-cCC-----ccceechHHHHhhcCCcccccCcccccccC---------------------
Confidence 9999998876432 22222 222 345666788999999999987532110000
Q ss_pred cccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcc
Q 002077 680 ETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFA 759 (972)
Q Consensus 680 e~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~ 759 (972)
| +.
T Consensus 520 ------------------------------------------~-------------------------D~---------- 522 (923)
T KOG0387|consen 520 ------------------------------------------P-------------------------DY---------- 522 (923)
T ss_pred ------------------------------------------C-------------------------Cc----------
Confidence 0 00
Q ss_pred cccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHH-
Q 002077 760 DKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLN- 838 (972)
Q Consensus 760 ~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~- 838 (972)
...+..|.|++.+.++|..+..+|. |+|+|||...|||+|+..|.
T Consensus 523 -----~g~~k~sGKm~vl~~ll~~W~kqg~-----------------------------rvllFsqs~~mLdilE~fL~~ 568 (923)
T KOG0387|consen 523 -----EGDPKRSGKMKVLAKLLKDWKKQGD-----------------------------RVLLFSQSRQMLDILESFLRR 568 (923)
T ss_pred -----CCChhhcchHHHHHHHHHHHhhCCC-----------------------------EEEEehhHHHHHHHHHHHHHh
Confidence 0112368999999999999999887 99999999999999999999
Q ss_pred hCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCccc
Q 002077 839 QHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 839 ~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 918 (972)
..|+.|+++||+++...|+.+|++|+++..+.|||+++++||.|||||.||+||+|||.|||+...||-.|+|||||++.
T Consensus 569 ~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkd 648 (923)
T KOG0387|consen 569 AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKD 648 (923)
T ss_pred cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhc
Q 002077 919 VTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 971 (972)
Q Consensus 919 V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~ 971 (972)
|.||||++.+||||+||..|-.|..|...++-.-.. ..-....||..||.
T Consensus 649 V~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q---~RfF~~~dl~dLFs 698 (923)
T KOG0387|consen 649 VVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQ---RRFFKGNDLHDLFS 698 (923)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHH---hhhcccccHHHHhC
Confidence 999999999999999999999999999999864322 13345677777775
No 7
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.1e-76 Score=698.89 Aligned_cols=490 Identities=30% Similarity=0.496 Sum_probs=388.4
Q ss_pred HHHHHHhcCC-CCc-ccCCCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccc
Q 002077 250 YQAALEDLNQ-PKV-EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKS 327 (972)
Q Consensus 250 ~~~~~~~l~~-~~~-e~~~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~ 327 (972)
+...++.+-. .+. ++.+|..+ ++.||.||.+||+|+....+..+| ||||||||||||+|+|++++...+..
T Consensus 950 erkFLeqlldpski~~y~Ip~pI-~a~LRkYQqEGVnWLaFLnky~LH---GILcDDMGLGKTLQticilAsd~y~r--- 1022 (1549)
T KOG0392|consen 950 ERKFLEQLLDPSKIPEYKIPVPI-SAKLRKYQQEGVNWLAFLNKYKLH---GILCDDMGLGKTLQTICILASDHYKR--- 1022 (1549)
T ss_pred HHHHHHHhcCcccCCccccccch-hHHHHHHHHhccHHHHHHHHhccc---ceeeccccccHHHHHHHHHHHHHHhh---
Confidence 3344444444 343 47788775 789999999999999988887666 99999999999999999998644330
Q ss_pred hhhhccccccccccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhC
Q 002077 328 KTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKV 407 (972)
Q Consensus 328 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~ 407 (972)
+++ +. .-...|.|||||.+|..+|+.|+.+|+
T Consensus 1023 --------~s~------------------------------------~~----e~~~~PSLIVCPsTLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 1023 --------RSE------------------------------------SS----EFNRLPSLIVCPSTLTGHWKSEVKKFF 1054 (1549)
T ss_pred --------ccc------------------------------------ch----hhccCCeEEECCchhhhHHHHHHHHhc
Confidence 000 00 022346899999999999999999999
Q ss_pred CCCCCeEEEEEeCCC--CCCChhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhcccccc
Q 002077 408 PDKAALSVLIYHGGS--RTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVS 485 (972)
Q Consensus 408 ~~~~~l~vlvy~G~~--r~~~~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~ 485 (972)
| .|+|+.|.|+. |......+.++||+||||++++|++.
T Consensus 1055 p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d------------------------------------- 1094 (1549)
T KOG0392|consen 1055 P---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD------------------------------------- 1094 (1549)
T ss_pred c---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH-------------------------------------
Confidence 8 69999999986 44455677889999999999998652
Q ss_pred ccccCCCCCCCCCCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcccee--eccCcCCcHHHH-------
Q 002077 486 KRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTI--KIPISRNSLHGY------- 556 (972)
Q Consensus 486 kk~k~~~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~~~i--~tPi~~~~~~~~------- 556 (972)
.|.++.|.++||||+|.|||.+|+.++|+++|++.+++| +|||+||..+.+
T Consensus 1095 --------------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLM 1154 (1549)
T KOG0392|consen 1095 --------------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLM 1154 (1549)
T ss_pred --------------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhc
Confidence 367788999999999999999999999999999999766 999998865533
Q ss_pred --------------------------------------HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCH
Q 002077 557 --------------------------------------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSK 598 (972)
Q Consensus 557 --------------------------------------~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~ 598 (972)
+.|+..+=||||||+|++|+. +||||.++..+|+|++
T Consensus 1155 PGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~-----DLPpKIIQDyyCeLs~ 1229 (1549)
T KOG0392|consen 1155 PGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLK-----DLPPKIIQDYYCELSP 1229 (1549)
T ss_pred ccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hCChhhhhheeeccCH
Confidence 445666779999999999985 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchh--HHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHH
Q 002077 599 EEWAFYKKLESDSLKKFKAFADAGTVNQN--YANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL 676 (972)
Q Consensus 599 ~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~--~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll 676 (972)
.|+++|+.+....+.....-...|..... ..+||++|..||+.|+||.|+....-.. +.
T Consensus 1230 lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~----------------la--- 1290 (1549)
T KOG0392|consen 1230 LQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPD----------------LA--- 1290 (1549)
T ss_pred HHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcch----------------HH---
Confidence 99999998877643333322223322222 7899999999999999999997521100 00
Q ss_pred HhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCC
Q 002077 677 SRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDS 756 (972)
Q Consensus 677 ~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~ 756 (972)
.++..|+|.- ..
T Consensus 1291 -------------------~i~~~l~~~~---------------------------------~~---------------- 1302 (1549)
T KOG0392|consen 1291 -------------------AIVSHLAHFN---------------------------------SS---------------- 1302 (1549)
T ss_pred -------------------HHHHHHHHhh---------------------------------hh----------------
Confidence 0111111110 00
Q ss_pred CcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHH
Q 002077 757 PFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENS 836 (972)
Q Consensus 757 ~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~ 836 (972)
......++|+.||-++|.+. .-|. . ........+....+|+||||||.+|+|++++-
T Consensus 1303 --------LHdi~hspKl~AL~qLL~eC-Gig~------~--------~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1303 --------LHDIQHSPKLSALKQLLSEC-GIGN------N--------SDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred --------HHHhhhchhHHHHHHHHHHh-CCCC------C--------CcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 00012689999999888762 2111 0 01111112224568999999999999999999
Q ss_pred HHhC---CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhccc
Q 002077 837 LNQH---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI 913 (972)
Q Consensus 837 L~~~---gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~Ri 913 (972)
|-+. .+.|.|+||+.++.+|++++++||+||.+.|||++|.+||.|||||.|+.|||++-.|||+...||+||||||
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRI 1439 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRI 1439 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhh
Confidence 9876 6678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhc
Q 002077 914 GQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 971 (972)
Q Consensus 914 GQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~ 971 (972)
||+|.|.|||||++||+||+|+.||.-|-..+..+++.+. .++..+..++|..||.
T Consensus 1440 GQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN--asl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1440 GQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN--ASLETMDTDQLLDLFT 1495 (1549)
T ss_pred cCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc--ccccccCHHHHHHHhc
Confidence 9999999999999999999999999999999999998753 4567789999999996
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=9.4e-75 Score=713.33 Aligned_cols=439 Identities=29% Similarity=0.475 Sum_probs=364.4
Q ss_pred CCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCC
Q 002077 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (972)
Q Consensus 266 ~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d 345 (972)
+|..+ ...|||||+.||.||+.... ++.|||||||||||||+|+|+++...+..
T Consensus 162 qP~~i-~~~Lr~YQleGlnWLi~l~~---~g~gGILADEMGLGKTlQaIalL~~L~~~---------------------- 215 (1033)
T PLN03142 162 QPSCI-KGKMRDYQLAGLNWLIRLYE---NGINGILADEMGLGKTLQTISLLGYLHEY---------------------- 215 (1033)
T ss_pred CChHh-ccchHHHHHHHHHHHHHHHh---cCCCEEEEeCCCccHHHHHHHHHHHHHHh----------------------
Confidence 45544 57899999999999997654 45789999999999999999999764432
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC
Q 002077 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (972)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~ 425 (972)
....+++|||||++++.||.+||.+|++ .+++++|+|....+
T Consensus 216 -----------------------------------~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~eR 257 (1033)
T PLN03142 216 -----------------------------------RGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEER 257 (1033)
T ss_pred -----------------------------------cCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHHH
Confidence 1334679999999999999999999997 79999999986433
Q ss_pred Ch-----hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCc
Q 002077 426 DP-----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSI 500 (972)
Q Consensus 426 ~~-----~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~ 500 (972)
.. .....+|||||||+++.++.
T Consensus 258 ~~~~~~~~~~~~~dVvITSYe~l~~e~----------------------------------------------------- 284 (1033)
T PLN03142 258 AHQREELLVAGKFDVCVTSFEMAIKEK----------------------------------------------------- 284 (1033)
T ss_pred HHHHHHHhcccCCCcceecHHHHHHHH-----------------------------------------------------
Confidence 21 12357999999999997631
Q ss_pred ccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHH-----------------------
Q 002077 501 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHG----------------------- 555 (972)
Q Consensus 501 ~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~----------------------- 555 (972)
..|..+.|++|||||||.|||+.|+.+++++.|.+.+ .+++||++|+..+.
T Consensus 285 ----~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~ 360 (1033)
T PLN03142 285 ----TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ 360 (1033)
T ss_pred ----HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHc
Confidence 1366788999999999999999999999999999887 56699999875443
Q ss_pred ----------HHHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 002077 556 ----------YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVN 625 (972)
Q Consensus 556 ----------~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~ 625 (972)
...|+.+|++|||||+|.++.. .||++.+.++.|.||+.|+++|..+.......+ ..+.
T Consensus 361 ~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~-----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l----~~g~-- 429 (1033)
T PLN03142 361 ISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK-----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVV----NAGG-- 429 (1033)
T ss_pred cccccchHHHHHHHHHHhhHHHhhhhHHHHhh-----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH----hccc--
Confidence 2567889999999999999863 799999999999999999999999876544332 2222
Q ss_pred hhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcch
Q 002077 626 QNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVF 705 (972)
Q Consensus 626 ~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~f 705 (972)
....++.++++||++|+||.|+....... +..+ .
T Consensus 430 -~~~~LlnilmqLRk~cnHP~L~~~~ep~~----------------------------------------~~~~-~---- 463 (1033)
T PLN03142 430 -ERKRLLNIAMQLRKCCNHPYLFQGAEPGP----------------------------------------PYTT-G---- 463 (1033)
T ss_pred -cHHHHHHHHHHHHHHhCCHHhhhcccccC----------------------------------------cccc-h----
Confidence 34567888999999999999875321100 0000 0
Q ss_pred hhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhc
Q 002077 706 CYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQC 785 (972)
Q Consensus 706 C~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~ 785 (972)
......|+|+..|.++|..+.
T Consensus 464 -----------------------------------------------------------e~lie~SgKl~lLdkLL~~Lk 484 (1033)
T PLN03142 464 -----------------------------------------------------------EHLVENSGKMVLLDKLLPKLK 484 (1033)
T ss_pred -----------------------------------------------------------hHHhhhhhHHHHHHHHHHHHH
Confidence 000115789999999999888
Q ss_pred cccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhc
Q 002077 786 ELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT 865 (972)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~ 865 (972)
..+. ||||||||+.|+++|+..|...|++|++|+|+++..+|+++|+.|+.
T Consensus 485 ~~g~-----------------------------KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~ 535 (1033)
T PLN03142 485 ERDS-----------------------------RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNK 535 (1033)
T ss_pred hcCC-----------------------------eEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhcc
Confidence 7766 99999999999999999999999999999999999999999999997
Q ss_pred CC-CeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHH
Q 002077 866 DR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKM 944 (972)
Q Consensus 866 ~~-~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~l 944 (972)
++ ...|||+|++|||+|||||.|++||+||+||||+.+.||+||||||||+++|+||||+++|||||+|++++.+|..+
T Consensus 536 ~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 536 PGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred ccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 54 56799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCccCCCCHHHHHHhhc
Q 002077 945 VASAFGEDQGGGTASRLTVEDLRYLFM 971 (972)
Q Consensus 945 i~~a~g~~~~~~~~~~lt~edl~~Lf~ 971 (972)
...+++.+.... ...++.+||..||.
T Consensus 616 d~~Vi~~g~~~~-~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 616 DALVIQQGRLAE-QKTVNKDELLQMVR 641 (1033)
T ss_pred HHHHHhcCcccc-cccCCHHHHHHHHH
Confidence 998886543221 25688999998874
No 9
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-72 Score=654.71 Aligned_cols=542 Identities=29% Similarity=0.443 Sum_probs=386.2
Q ss_pred CcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCC
Q 002077 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 348 (972)
Q Consensus 269 ~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 348 (972)
.++...||.||++||.||..+..+. ..||||||||||||||+|+|+++....
T Consensus 610 sLLrGqLReYQkiGLdWLatLYekn---lNGILADEmGLGKTIQtISllAhLACe------------------------- 661 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKN---LNGILADEMGLGKTIQTISLLAHLACE------------------------- 661 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhc---ccceehhhhcccchhHHHHHHHHHHhc-------------------------
Confidence 4568889999999999999988765 459999999999999999999875432
Q ss_pred CCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCC--
Q 002077 349 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-- 426 (972)
Q Consensus 349 ~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~-- 426 (972)
...++|.|||||+|++-||+-||++||+ .++++.|+|+.+.+.
T Consensus 662 --------------------------------egnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~kErkeK 706 (1958)
T KOG0391|consen 662 --------------------------------EGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSHKERKEK 706 (1958)
T ss_pred --------------------------------ccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCHHHHHHH
Confidence 1456889999999999999999999999 799999999975542
Q ss_pred ---hhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccC
Q 002077 427 ---PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (972)
Q Consensus 427 ---~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~ 503 (972)
+..-..|.|.||||..|..+.
T Consensus 707 RqgW~kPnaFHVCItSYklv~qd~-------------------------------------------------------- 730 (1958)
T KOG0391|consen 707 RQGWAKPNAFHVCITSYKLVFQDL-------------------------------------------------------- 730 (1958)
T ss_pred hhcccCCCeeEEeehhhHHHHhHH--------------------------------------------------------
Confidence 223346789999999998643
Q ss_pred CCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH-------------------------
Q 002077 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY------------------------- 556 (972)
Q Consensus 504 ~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~------------------------- 556 (972)
..|.+.+|.++||||||+|||.++++++|+..+.+++ .+++||++|+..+.|
T Consensus 731 -~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPl 809 (1958)
T KOG0391|consen 731 -TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPL 809 (1958)
T ss_pred -HHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcc
Confidence 1256677999999999999999999999999999998 556889887755433
Q ss_pred ---------------HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 002077 557 ---------------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 621 (972)
Q Consensus 557 ---------------~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~ 621 (972)
.+|+.+|++|+|||+|.+|.+ .||.|.+++++|.||..||.+|+.+..... -++.+.
T Consensus 810 tgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEK-----QlpkKyEHvv~CrLSkRQR~LYDDfmsq~~--TKetLk- 881 (1958)
T KOG0391|consen 810 TGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEK-----QLPKKYEHVVKCRLSKRQRALYDDFMSQPG--TKETLK- 881 (1958)
T ss_pred hhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHH-----hcchhhhhheeeehhhhHHHHHHHHhhccc--hhhHhh-
Confidence 789999999999999999974 899999999999999999999998865432 223333
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCccccccc-------------cc--------------c-------------cccc--
Q 002077 622 GTVNQNYANILLMLLRLRQACDHPLLVKEYD-------------FD--------------S-------------VGKI-- 659 (972)
Q Consensus 622 g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~-------------~~--------------~-------------~~~~-- 659 (972)
..++.+|+..|++||++|+||.|+.... .. . +...
T Consensus 882 ---SGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~p 958 (1958)
T KOG0391|consen 882 ---SGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRP 958 (1958)
T ss_pred ---cCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccch
Confidence 3478999999999999999996654310 00 0 0000
Q ss_pred --------------------------------------------hHH----------------------------HhhcC
Q 002077 660 --------------------------------------------SGE----------------------------MAKRL 667 (972)
Q Consensus 660 --------------------------------------------~~e----------------------------~~~~l 667 (972)
.++ +....
T Consensus 959 as~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~ 1038 (1958)
T KOG0391|consen 959 ASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQP 1038 (1958)
T ss_pred hhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcC
Confidence 000 00000
Q ss_pred C-------------------------------------------hHH---------------------------------
Q 002077 668 P-------------------------------------------RDM--------------------------------- 671 (972)
Q Consensus 668 ~-------------------------------------------~e~--------------------------------- 671 (972)
. ..+
T Consensus 1039 n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~ 1118 (1958)
T KOG0391|consen 1039 NTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGE 1118 (1958)
T ss_pred CCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCC
Confidence 0 000
Q ss_pred ----------------HHHHHHhhcc------cccccccCCCCC-----------CCcccccCCc-chhhhhHhhhhcC-
Q 002077 672 ----------------LIDLLSRLET------SSAICCVCSDPP-----------EDSVVTMCGH-VFCYQCASEYITG- 716 (972)
Q Consensus 672 ----------------~~~ll~~le~------~~~~C~iC~d~~-----------~~~vit~CgH-~fC~~Ci~~~~~~- 716 (972)
+...+.++.. ....-.+|.-+- ...+++.|-. -+|...|..+.--
T Consensus 1119 ~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ 1198 (1958)
T KOG0391|consen 1119 PPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVI 1198 (1958)
T ss_pred CccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeec
Confidence 0000111100 001111332211 1112222211 1122222221110
Q ss_pred CCCCCCCccccccccccccccc-----cccccccCCCCC-CCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCc
Q 002077 717 DDNMCPAPRCKEQLGADVVFSK-----TTLKNCVSDDGG-GSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTK 790 (972)
Q Consensus 717 ~~~~cp~~~Cr~~l~~~~~~s~-----~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~ 790 (972)
.--..+.+.|+..-....+-.. ..+........- .....+-........--.|+.+|++.|.-+|+.+...|+
T Consensus 1199 ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~egh- 1277 (1958)
T KOG0391|consen 1199 PPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGH- 1277 (1958)
T ss_pred ccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCc-
Confidence 0001111222222111110000 000000000000 000000000011111224688999999999999998887
Q ss_pred cchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCee
Q 002077 791 CSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT 870 (972)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~ 870 (972)
++|||+|.+.|||+|+..|.-+|+.|+||||+++.++|+.++++||.|+.++
T Consensus 1278 ----------------------------RvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIf 1329 (1958)
T KOG0391|consen 1278 ----------------------------RVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIF 1329 (1958)
T ss_pred ----------------------------eEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceE
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhc
Q 002077 871 VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFG 950 (972)
Q Consensus 871 VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g 950 (972)
|||+|++.||+|+|||.|+.|||||-.|||+...||-||||||||+|+|+|||||.+.||||+|++....|+.+=+-++.
T Consensus 1330 cfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiq 1409 (1958)
T KOG0391|consen 1330 CFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQ 1409 (1958)
T ss_pred EEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977666664
Q ss_pred CCCCCCccCCCCHHHHHHhhcC
Q 002077 951 EDQGGGTASRLTVEDLRYLFMV 972 (972)
Q Consensus 951 ~~~~~~~~~~lt~edl~~Lf~~ 972 (972)
+. +-...-++..+++.||++
T Consensus 1410 gg--dfTt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1410 GG--DFTTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred cC--CccHHHHhhhhHHHHhcC
Confidence 42 234456777888888874
No 10
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.2e-69 Score=641.28 Aligned_cols=449 Identities=29% Similarity=0.467 Sum_probs=367.7
Q ss_pred CCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCC
Q 002077 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (972)
Q Consensus 266 ~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d 345 (972)
+|.-.....||.||+.||+||+...... ..||||||||||||||+|+++.+....
T Consensus 362 qp~~~~g~~LRdyQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~~~---------------------- 416 (1373)
T KOG0384|consen 362 QPEYKGGNELRDYQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLFHS---------------------- 416 (1373)
T ss_pred CccccccchhhhhhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHHHh----------------------
Confidence 4555556789999999999999776543 458999999999999999999875543
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC
Q 002077 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (972)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~ 425 (972)
....+|.|||||.|.+.+|+.||..|. .+++++|+|....+
T Consensus 417 -----------------------------------~~~~gpflvvvplst~~~W~~ef~~w~----~mn~i~y~g~~~sr 457 (1373)
T KOG0384|consen 417 -----------------------------------LQIHGPFLVVVPLSTITAWEREFETWT----DMNVIVYHGNLESR 457 (1373)
T ss_pred -----------------------------------hhccCCeEEEeehhhhHHHHHHHHHHh----hhceeeeecchhHH
Confidence 134578999999999999999999997 59999999986544
Q ss_pred Ch-----------hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCC
Q 002077 426 DP-----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKG 494 (972)
Q Consensus 426 ~~-----------~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~ 494 (972)
.. ...-+++++||||+++.++.
T Consensus 458 ~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk----------------------------------------------- 490 (1373)
T KOG0384|consen 458 QLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK----------------------------------------------- 490 (1373)
T ss_pred HHHHHHHheecCCccccccceeehhhHHHhccH-----------------------------------------------
Confidence 21 12236999999999997642
Q ss_pred CCCCCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHH------------------
Q 002077 495 NVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLH------------------ 554 (972)
Q Consensus 495 ~~~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~------------------ 554 (972)
..|..++|..+++||||.+||..+..+.++..+...+ ..++||++|+..+
T Consensus 491 ----------~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~ 560 (1373)
T KOG0384|consen 491 ----------AELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDE 560 (1373)
T ss_pred ----------hhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHH
Confidence 3588999999999999999999999999998888777 5569999977433
Q ss_pred -----------HHHHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002077 555 -----------GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGT 623 (972)
Q Consensus 555 -----------~~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~ 623 (972)
++..|+.+|+|+||||.|++|-+ .||++.+.++.|+||..|.++|..++.+--.. +..|.
T Consensus 561 f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek-----slp~k~E~IlrVels~lQk~yYk~ILtkN~~~----LtKG~ 631 (1373)
T KOG0384|consen 561 FLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK-----SLPPKEETILRVELSDLQKQYYKAILTKNFSA----LTKGA 631 (1373)
T ss_pred HHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc-----CCCCCcceEEEeehhHHHHHHHHHHHHhhHHH----HhccC
Confidence 24789999999999999999975 89999999999999999999999998854332 23444
Q ss_pred cchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCc
Q 002077 624 VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGH 703 (972)
Q Consensus 624 ~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH 703 (972)
-..+ .++|..++.||++|+||+|+.+......+. ....+....+.
T Consensus 632 ~g~~-~~lLNimmELkKccNHpyLi~gaee~~~~~--------~~~~~~d~~L~-------------------------- 676 (1373)
T KOG0384|consen 632 KGST-PSLLNIMMELKKCCNHPYLIKGAEEKILGD--------FRDKMRDEALQ-------------------------- 676 (1373)
T ss_pred CCCC-chHHHHHHHHHHhcCCccccCcHHHHHHHh--------hhhcchHHHHH--------------------------
Confidence 3333 788888999999999999998743211000 00000000000
Q ss_pred chhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHh
Q 002077 704 VFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHT 783 (972)
Q Consensus 704 ~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~ 783 (972)
. -...|+|+-.|-++|..
T Consensus 677 --------~------------------------------------------------------lI~sSGKlVLLDKLL~r 694 (1373)
T KOG0384|consen 677 --------A------------------------------------------------------LIQSSGKLVLLDKLLPR 694 (1373)
T ss_pred --------H------------------------------------------------------HHHhcCcEEeHHHHHHH
Confidence 0 01267899888889999
Q ss_pred hccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhh
Q 002077 784 QCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 863 (972)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F 863 (972)
+.+.|+ |||||||.+.|||+|+.+|...+++|.||||++..+.|+++|+.|
T Consensus 695 Lk~~GH-----------------------------rVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 695 LKEGGH-----------------------------RVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred HhcCCc-----------------------------eEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhc
Confidence 888877 999999999999999999999999999999999999999999999
Q ss_pred hcC-CCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHH
Q 002077 864 NTD-REITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKR 942 (972)
Q Consensus 864 ~~~-~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~ 942 (972)
+.. ..-+|||+||+|||.||||+.|+.||+||-.|||....||..|||||||++.|.|||||++||||+-|++...+|.
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~Km 825 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKM 825 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHh
Confidence 974 5788999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCC---CCccCCCCHHHHHHhh
Q 002077 943 KMVASAFGEDQG---GGTASRLTVEDLRYLF 970 (972)
Q Consensus 943 ~li~~a~g~~~~---~~~~~~lt~edl~~Lf 970 (972)
-|=+.++..... .......+.+||..|+
T Consensus 826 vLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 826 VLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred hhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 766666533221 1223678889988875
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=9.6e-66 Score=577.39 Aligned_cols=506 Identities=28% Similarity=0.389 Sum_probs=359.8
Q ss_pred CcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCC
Q 002077 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 348 (972)
Q Consensus 269 ~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 348 (972)
.+++..|..||+.||+|+...... +-.||||||||||||||+|++++++...
T Consensus 562 kil~ctLKEYQlkGLnWLvnlYdq---GiNGILADeMGLGKTVQsisvlAhLaE~------------------------- 613 (1185)
T KOG0388|consen 562 KILKCTLKEYQLKGLNWLVNLYDQ---GINGILADEMGLGKTVQSISVLAHLAET------------------------- 613 (1185)
T ss_pred hhhhhhhHHHhhccHHHHHHHHHc---cccceehhhhccchhHHHHHHHHHHHHh-------------------------
Confidence 356889999999999999988764 4669999999999999999999875432
Q ss_pred CCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCCh-
Q 002077 349 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP- 427 (972)
Q Consensus 349 ~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~- 427 (972)
..-.+|+|||+|+|+|.||++||.+|+| .++++-|-|+...+..
T Consensus 614 --------------------------------~nIwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eRkiL 658 (1185)
T KOG0388|consen 614 --------------------------------HNIWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSERKIL 658 (1185)
T ss_pred --------------------------------ccCCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhhHHH
Confidence 1334789999999999999999999998 7999999998654421
Q ss_pred ----------hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCC
Q 002077 428 ----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 497 (972)
Q Consensus 428 ----------~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~ 497 (972)
...+.++||||||+++-.+
T Consensus 659 rKfw~rKnmY~rna~fhVviTSYQlvVtD--------------------------------------------------- 687 (1185)
T KOG0388|consen 659 RKFWNRKNMYRRNAPFHVVITSYQLVVTD--------------------------------------------------- 687 (1185)
T ss_pred HHhcchhhhhccCCCceEEEEeeeeeech---------------------------------------------------
Confidence 1346689999999998653
Q ss_pred CCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHH--------------------
Q 002077 498 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHG-------------------- 555 (972)
Q Consensus 498 ~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~-------------------- 555 (972)
...|.++.|-++||||||.||...|.+++.+.++.++. .+++|||+++-.+.
T Consensus 688 ------eky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFse 761 (1185)
T KOG0388|consen 688 ------EKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSE 761 (1185)
T ss_pred ------HHHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHH
Confidence 11367889999999999999999999999999999887 56699999764332
Q ss_pred --------------------HHHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 002077 556 --------------------YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 615 (972)
Q Consensus 556 --------------------~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~ 615 (972)
++||..||+||||||.|.+|+. +|-.|++..++|+||..|..+|+.+....-
T Consensus 762 WFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~s-----ELg~Kteidv~CdLs~RQ~~lYq~ik~~iS--- 833 (1185)
T KOG0388|consen 762 WFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVIS-----ELGQKTEIDVYCDLSYRQKVLYQEIKRSIS--- 833 (1185)
T ss_pred HHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHH-----HhccceEEEEEechhHHHHHHHHHHHHHhh---
Confidence 2789999999999999999974 899999999999999999999998765332
Q ss_pred HHHhhcCCcchhHHHHHHHHHHHHhhcCCCccccccccccc-----ccchH--------------------HHhhcC---
Q 002077 616 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSV-----GKISG--------------------EMAKRL--- 667 (972)
Q Consensus 616 ~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~-----~~~~~--------------------e~~~~l--- 667 (972)
......+++.||++|+||.|+......+. ..... +..+..
T Consensus 834 ------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fn 901 (1185)
T KOG0388|consen 834 ------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFN 901 (1185)
T ss_pred ------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHh
Confidence 11222378999999999999876433211 00000 111100
Q ss_pred ChHHHHH---HHHhhcccccccccC----CCCCCCcccccCCcchhhhhHhh--------------hhcCC------CCC
Q 002077 668 PRDMLID---LLSRLETSSAICCVC----SDPPEDSVVTMCGHVFCYQCASE--------------YITGD------DNM 720 (972)
Q Consensus 668 ~~e~~~~---ll~~le~~~~~C~iC----~d~~~~~vit~CgH~fC~~Ci~~--------------~~~~~------~~~ 720 (972)
..+++.. +...+.++ .--.+. .+.-.-+.+..-..-.-+..... .+..+ ...
T Consensus 902 iye~i~~~~g~~~~v~Ge-g~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y 980 (1185)
T KOG0388|consen 902 IYEMIERINGLRRIVNGE-GPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVY 980 (1185)
T ss_pred HHHHHHHHhhhHhhhcCC-CcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhhee
Confidence 0111111 11111111 111111 01000010000000000000000 00000 001
Q ss_pred CCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCC--cccchHHHHHHHHHHhhccccCccchhhhhc
Q 002077 721 CPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDN--EYISSKIRTVLDILHTQCELNTKCSIVEIHD 798 (972)
Q Consensus 721 cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~ 798 (972)
|-.|..+.+-. .+...+.+.+...+.......+. ....+-+ ...|+|+..|-++|..+...|+
T Consensus 981 ~y~P~v~apPv--LI~~ead~PeId~E~~~~pLn~~----i~~Ppm~~FitdSgKL~~LDeLL~kLkaegH--------- 1045 (1185)
T KOG0388|consen 981 CYSPVVAAPPV--LISNEADLPEIDLENRHIPLNTT----IYVPPMNTFITDSGKLVVLDELLPKLKAEGH--------- 1045 (1185)
T ss_pred eeccccCCCCe--eeecccCCCCCCccccCcccccc----eecCcHHhhhccccceeeHHHHHHHhhcCCc---------
Confidence 11111111100 00011111111111100000000 0000000 2378999999999999998887
Q ss_pred ccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 799 LAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
++|+|-|.|.|+|+++.+|.-.|+.|.||||+.....|..+|.+|+. ++++|||+|++|
T Consensus 1046 --------------------RvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1046 --------------------RVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRA 1104 (1185)
T ss_pred --------------------eEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999998 799999999999
Q ss_pred cccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcC
Q 002077 879 GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 951 (972)
Q Consensus 879 gg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~ 951 (972)
||.|+|||+|+.|||||..|||+...||+||+||+||++.|+||||++++||||+|+....+|...-..+|-.
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHG 1177 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999877666643
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-61 Score=571.22 Aligned_cols=455 Identities=26% Similarity=0.373 Sum_probs=353.9
Q ss_pred ccccCchhHHHHHHHHHHhhhcCC---CccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCC
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSL---HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDD 347 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~---~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 347 (972)
++-.|||||++|+.||.+.-.... ...|+|+||+||+|||+|+|++|..+....+
T Consensus 235 l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P---------------------- 292 (776)
T KOG0390|consen 235 LKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFP---------------------- 292 (776)
T ss_pred HhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCc----------------------
Confidence 466799999999999997665541 5678899999999999999999987654411
Q ss_pred CCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC--
Q 002077 348 NGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-- 425 (972)
Q Consensus 348 ~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-- 425 (972)
...+.++.+|||||.+|+.+|.+||.+|... +.+..+.++|..+..
T Consensus 293 -------------------------------~~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~-~~i~~l~~~~~~~~~w~ 340 (776)
T KOG0390|consen 293 -------------------------------QAKPLINKPLVVAPSSLVNNWKKEFGKWLGN-HRINPLDFYSTKKSSWI 340 (776)
T ss_pred -------------------------------CccccccccEEEccHHHHHHHHHHHHHhccc-cccceeeeecccchhhh
Confidence 0012346789999999999999999999875 378899999887641
Q ss_pred -C--h----hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCC
Q 002077 426 -D--P----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNS 498 (972)
Q Consensus 426 -~--~----~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~ 498 (972)
. . ...-.+-|.|.+|++++..+.
T Consensus 341 ~~~sil~~~~~~~~~~vli~sye~~~~~~~-------------------------------------------------- 370 (776)
T KOG0390|consen 341 KLKSILFLGYKQFTTPVLIISYETASDYCR-------------------------------------------------- 370 (776)
T ss_pred hhHHHHHhhhhheeEEEEeccHHHHHHHHH--------------------------------------------------
Confidence 0 1 111245688999999975321
Q ss_pred CcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH--------------------
Q 002077 499 SIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY-------------------- 556 (972)
Q Consensus 499 ~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~-------------------- 556 (972)
.+....+++||+||||+.||..+.+.+|+..|...+ .++||||+|+..+.|
T Consensus 371 -------~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~ 443 (776)
T KOG0390|consen 371 -------KILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKK 443 (776)
T ss_pred -------HHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHH
Confidence 145566889999999999999999999999999988 556999998865544
Q ss_pred ------------------------HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 002077 557 ------------------------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSL 612 (972)
Q Consensus 557 ------------------------~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~ 612 (972)
+.|..|...|++|||-....+ .||++.++++.+.+++.|+.+|+.+....
T Consensus 444 ~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k-----~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~- 517 (776)
T KOG0390|consen 444 FEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLK-----YLPGKYEYVVFCNPTPIQKELYKKLLDSM- 517 (776)
T ss_pred hhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhh-----hCCCceeEEEEeCCcHHHHHHHHHHHHHH-
Confidence 347888899999999954443 79999999999999999999999987653
Q ss_pred HHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCC
Q 002077 613 KKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDP 692 (972)
Q Consensus 613 ~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~ 692 (972)
.. ..+ .| ..|..++.|+++|+||.|+.-.... +.
T Consensus 518 ~~-~~~--~~-------~~l~~~~~L~k~cnhP~L~~~~~~~------------------------------------~~ 551 (776)
T KOG0390|consen 518 KM-RTL--KG-------YALELITKLKKLCNHPSLLLLCEKT------------------------------------EK 551 (776)
T ss_pred Hh-hhh--hc-------chhhHHHHHHHHhcCHHhhcccccc------------------------------------cc
Confidence 11 111 11 1577889999999999998621100 00
Q ss_pred CCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccch
Q 002077 693 PEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISS 772 (972)
Q Consensus 693 ~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss 772 (972)
++. .+....+.. .. -..........|.
T Consensus 552 ---------------------------------e~~------~~~~~~~~~-----~~---------~~~~~~~~~~ks~ 578 (776)
T KOG0390|consen 552 ---------------------------------EKA------FKNPALLLD-----PG---------KLKLDAGDGSKSG 578 (776)
T ss_pred ---------------------------------ccc------ccChHhhhc-----cc---------ccccccccchhhh
Confidence 000 000000000 00 0000001112578
Q ss_pred HHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCC
Q 002077 773 KIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS 852 (972)
Q Consensus 773 Ki~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s 852 (972)
|+..|+.++....+.. ..|+++.++|+.++++++..++.+|..+++|||+|+
T Consensus 579 kl~~L~~ll~~~~ek~----------------------------~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 579 KLLVLVFLLEVIREKL----------------------------LVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred HHHHHHHHHHHHhhhc----------------------------ceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 9998888886555443 248999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCe-eEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHH
Q 002077 853 LPARDRAVKDFNTDREI-TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931 (972)
Q Consensus 853 ~~~R~~~I~~F~~~~~~-~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIE 931 (972)
..+|+.+|+.||+.++. +|||+|+||||+||||++|++||+|||.|||+.++||+.||||.||+|+|+||||++.||+|
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 99999999999987655 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhc
Q 002077 932 DRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 971 (972)
Q Consensus 932 e~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~ 971 (972)
|+|+..|-.|..+-..+|+...... .....++++.||.
T Consensus 711 Ek~~qrq~~K~~lS~~v~~~~~~~~--~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 711 EKIYQRQTHKEGLSSMVFDEEEDVE--KHFFTEDLKTLFD 748 (776)
T ss_pred HHHHHHHHHhhhhhheEEecccccc--cccchHHHHHHHh
Confidence 9999999999999999998765422 3344578888885
No 13
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.2e-63 Score=575.82 Aligned_cols=442 Identities=30% Similarity=0.475 Sum_probs=359.1
Q ss_pred CCCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCC
Q 002077 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (972)
Q Consensus 265 ~~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (972)
.+|.-+....|++||+.||.||..+.+.. ..||||||||||||||+|+||.+....
T Consensus 385 ~Qps~l~GG~Lk~YQl~GLqWmVSLyNNn---LNGILADEMGLGKTIQtIsLitYLmE~--------------------- 440 (1157)
T KOG0386|consen 385 KQPSSLQGGELKEYQLHGLQWMVSLYNNN---LNGILADEMGLGKTIQTISLITYLMEH--------------------- 440 (1157)
T ss_pred cCcchhcCCCCchhhhhhhHHHhhccCCC---cccccchhcccchHHHHHHHHHHHHHH---------------------
Confidence 45666667789999999999999998865 459999999999999999999987654
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCC
Q 002077 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT 424 (972)
Q Consensus 345 d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~ 424 (972)
....+|.|||||.++|.+|..||.+|.| .+..++|.|+...
T Consensus 441 ------------------------------------K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp~~ 481 (1157)
T KOG0386|consen 441 ------------------------------------KQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTPQQ 481 (1157)
T ss_pred ------------------------------------cccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCHHH
Confidence 1345779999999999999999999998 8999999998754
Q ss_pred CCh----hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCc
Q 002077 425 KDP----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSI 500 (972)
Q Consensus 425 ~~~----~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~ 500 (972)
+.. ....+|+|++|||+.+.++-
T Consensus 482 R~~l~~qir~gKFnVLlTtyEyiikdk----------------------------------------------------- 508 (1157)
T KOG0386|consen 482 RSGLTKQQRHGKFNVLLTTYEYIIKDK----------------------------------------------------- 508 (1157)
T ss_pred HhhHHHHHhcccceeeeeeHHHhcCCH-----------------------------------------------------
Confidence 421 22379999999999987531
Q ss_pred ccCCCCCccceeeEEEEcccccccccchHHHHHHH-hhhhcc--ceeeccCcCCcHHHH---------------------
Q 002077 501 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACC-SLRAKR--STIKIPISRNSLHGY--------------------- 556 (972)
Q Consensus 501 ~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~-~L~a~~--~~i~tPi~~~~~~~~--------------------- 556 (972)
..|.++.|..+||||+|.|||+.++.+..+. ...+.+ .+++||++++..+.+
T Consensus 509 ----~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWF 584 (1157)
T KOG0386|consen 509 ----ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWF 584 (1157)
T ss_pred ----HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHh
Confidence 2478999999999999999999998888776 444444 556888887654432
Q ss_pred ----------------------HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 002077 557 ----------------------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKK 614 (972)
Q Consensus 557 ----------------------~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~ 614 (972)
.+|..+|+||+|||.|.+|-. .||+|++.++.|++|.-|+.+|..+.+..+-.
T Consensus 585 N~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~-----~LPdKve~viKC~mSalQq~lY~~m~~~g~l~ 659 (1157)
T KOG0386|consen 585 NQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ-----ELPDKVEDVIKCDMSALQQSLYKQMQNKGQLL 659 (1157)
T ss_pred hhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh-----hCchhhhHhhheehhhhhHhhhHHHHhCCCCC
Confidence 788999999999999999864 89999999999999999999998765432211
Q ss_pred HHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCC
Q 002077 615 FKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPE 694 (972)
Q Consensus 615 ~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~ 694 (972)
. ........+..+....+.||++|+||++....... |..|.++
T Consensus 660 ~----d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~-------------------------------~~~~~~~-- 702 (1157)
T KOG0386|consen 660 K----DTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS-------------------------------YTLHYDI-- 702 (1157)
T ss_pred c----CchhccccchhhhhHhHHHHHhcCCchhhhhhccc-------------------------------cccccCh--
Confidence 1 11112234566778889999999999998642211 0001000
Q ss_pred CcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHH
Q 002077 695 DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKI 774 (972)
Q Consensus 695 ~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi 774 (972)
..-+..++|+
T Consensus 703 ----------------------------------------------------------------------~dL~R~sGKf 712 (1157)
T KOG0386|consen 703 ----------------------------------------------------------------------KDLVRVSGKF 712 (1157)
T ss_pred ----------------------------------------------------------------------hHHHHhccHH
Confidence 0001146799
Q ss_pred HHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q 002077 775 RTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLP 854 (972)
Q Consensus 775 ~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~ 854 (972)
..|-.+|-.+.+.|+ +||.|+|.|.++++++.+|.-.++.|.|+||++..+
T Consensus 713 ELLDRiLPKLkatgH-----------------------------RVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~ 763 (1157)
T KOG0386|consen 713 ELLDRILPKLKATGH-----------------------------RVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVE 763 (1157)
T ss_pred HHHHhhhHHHHhcCc-----------------------------chhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchh
Confidence 988888988888887 999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc-CCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHH
Q 002077 855 ARDRAVKDFNT-DREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDR 933 (972)
Q Consensus 855 ~R~~~I~~F~~-~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~ 933 (972)
+|...++.|+. +..+++||+|++|||.|||||.|+.||+||..|||....||.+|+|||||+++|.|+|+++-++|||+
T Consensus 764 eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~ 843 (1157)
T KOG0386|consen 764 ERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEK 843 (1157)
T ss_pred hHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHH
Confidence 99999999997 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhh
Q 002077 934 ILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 970 (972)
Q Consensus 934 Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf 970 (972)
|++....|.++-..++..+ ..-.+-|.+|-++++
T Consensus 844 il~~a~~Kl~~d~kviqag---~fdn~st~~eR~~~L 877 (1157)
T KOG0386|consen 844 ILAEAFYKLDVDGKVIQAG---KFDNKSTAEEREMFL 877 (1157)
T ss_pred HHHHHHHhcCchHhhhhcc---cccCCCcHHHHHHHH
Confidence 9999999998776665432 222344555555443
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.6e-58 Score=529.11 Aligned_cols=545 Identities=24% Similarity=0.310 Sum_probs=362.1
Q ss_pred ccccCchhHHHHHHHHHHhhh------cCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCC
Q 002077 271 LSVNLLKHQKIALAWMLQKET------RSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~------~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (972)
+...|.|||..||.||+..-- ....+.|||||+.||||||+|+|+++++....
T Consensus 665 lv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c--------------------- 723 (1567)
T KOG1015|consen 665 LVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLC--------------------- 723 (1567)
T ss_pred HHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHh---------------------
Confidence 456799999999999985332 22356899999999999999999999865432
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCC---CCeEEEEEeCC
Q 002077 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDK---AALSVLIYHGG 421 (972)
Q Consensus 345 d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~---~~l~vlvy~G~ 421 (972)
.....++.|||||.+++.||.+||++|.+.. ..+.|..+..-
T Consensus 724 -----------------------------------~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~v 768 (1567)
T KOG1015|consen 724 -----------------------------------DKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATV 768 (1567)
T ss_pred -----------------------------------hccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhc
Confidence 0123467999999999999999999999841 24555555544
Q ss_pred CCCCCh-----hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCC
Q 002077 422 SRTKDP-----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNV 496 (972)
Q Consensus 422 ~r~~~~-----~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~ 496 (972)
++..+. .+..+-.|.|+.|+.+++--... .-|.++ .+
T Consensus 769 kr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr-----------------------~vk~rk----~k----------- 810 (1567)
T KOG1015|consen 769 KRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGR-----------------------NVKSRK----LK----------- 810 (1567)
T ss_pred cChHHHHHHHHHHHhcCCEEEEehHHHHHHhccc-----------------------chhhhH----HH-----------
Confidence 443322 23356789999999998731110 000010 00
Q ss_pred CCCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH------------------
Q 002077 497 NSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY------------------ 556 (972)
Q Consensus 497 ~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~------------------ 556 (972)
......|..-+.+.||+||||.|||..|.+++|+..++.++ -+++||++||..+.+
T Consensus 811 ----e~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~Efr 886 (1567)
T KOG1015|consen 811 ----EIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFR 886 (1567)
T ss_pred ----HHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHH
Confidence 00112366677899999999999999999999999999998 566899998877654
Q ss_pred ---------------------------HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHH
Q 002077 557 ---------------------------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609 (972)
Q Consensus 557 ---------------------------~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~ 609 (972)
..|..+|..|+-|+-..-+. ..||||++.++.|.||+.|+++|++++.
T Consensus 887 NRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vlt-----k~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 887 NRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLT-----KFLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred HhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----ccCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 33556666666666555443 3699999999999999999999998876
Q ss_pred HHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccC
Q 002077 610 DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVC 689 (972)
Q Consensus 610 ~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC 689 (972)
. +.....- ..|. ....+++|..+.-|+++..||..+.-...+...+ ..+. ..+..-.||
T Consensus 962 h-~~~~G~d-~eg~-~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enk------R~~s------------eddm~~fi~ 1020 (1567)
T KOG1015|consen 962 H-LTGVGND-SEGG-RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENK------RYFS------------EDDMDEFIA 1020 (1567)
T ss_pred h-ccccCCc-cccc-cchhhhHHHHHHHHHHHhcCCCceeechhhhhhc------cccc------------ccchhcccc
Confidence 2 1110000 0111 1245788889999999999998765322211100 0000 001111122
Q ss_pred CCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccc--cccccccCCCCC--CC-------------
Q 002077 690 SDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSK--TTLKNCVSDDGG--GS------------- 752 (972)
Q Consensus 690 ~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~--~~l~~~~~~~~~--~~------------- 752 (972)
.+.-++-..... .-+|..--......++....-.........-.+... ..+..-..++.+ .+
T Consensus 1021 D~sde~e~s~~s-~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~ 1099 (1567)
T KOG1015|consen 1021 DDSDETEMSLSS-DDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSS 1099 (1567)
T ss_pred CCCccccccccc-cchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccc
Confidence 222111100000 011111101000000000000000000000000000 000000000000 00
Q ss_pred -----CCCCCccc--ccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEec
Q 002077 753 -----PTDSPFAD--KSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQ 825 (972)
Q Consensus 753 -----~~~~~~~~--~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSq 825 (972)
+....+.+ ..........|+|+-.|+++|+..-+-|. |+|||||
T Consensus 1100 s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGD-----------------------------KlLVFSQ 1150 (1567)
T KOG1015|consen 1100 SNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGD-----------------------------KLLVFSQ 1150 (1567)
T ss_pred cCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcc-----------------------------eeEEeec
Confidence 00000000 01111223478999999999998888877 9999999
Q ss_pred chHHHHHHHHHHHh----------------------CCCcEEEEeCCCCHHHHHHHHHhhhcCC--CeeEEEEecCcccc
Q 002077 826 WTRMLDLVENSLNQ----------------------HCIQYRRLDGTMSLPARDRAVKDFNTDR--EITVMLMSLKAGNL 881 (972)
Q Consensus 826 ft~~ld~L~~~L~~----------------------~gi~~~~ldGs~s~~~R~~~I~~F~~~~--~~~VlLiSlkagg~ 881 (972)
....||+|+.+|.. .|..|++|||+++..+|+++.++||+.. ..++||||++||+.
T Consensus 1151 SL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsL 1230 (1567)
T KOG1015|consen 1151 SLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSL 1230 (1567)
T ss_pred ccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCcc
Confidence 99999999999964 2678999999999999999999999743 67789999999999
Q ss_pred ccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCC
Q 002077 882 GLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRL 961 (972)
Q Consensus 882 GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~l 961 (972)
|+||.+||+||+||-.|||+...|+|-|+||+||++||+||||++.||+|++||++|..|..+...++++.+. ..-.
T Consensus 1231 GiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv---~Rhy 1307 (1567)
T KOG1015|consen 1231 GINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQV---ERHY 1307 (1567)
T ss_pred ccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHH---HHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654 3447
Q ss_pred CHHHHHHhhcC
Q 002077 962 TVEDLRYLFMV 972 (972)
Q Consensus 962 t~edl~~Lf~~ 972 (972)
+.+||..||.+
T Consensus 1308 ~~neLteLy~f 1318 (1567)
T KOG1015|consen 1308 TMNELTELYTF 1318 (1567)
T ss_pred hHhhhHHHhhc
Confidence 88999999853
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-57 Score=576.88 Aligned_cols=461 Identities=38% Similarity=0.562 Sum_probs=365.0
Q ss_pred cccccCchhHHHHHHHHHH-hhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCC
Q 002077 270 LLSVNLLKHQKIALAWMLQ-KETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 348 (972)
Q Consensus 270 ~~~~~LrpyQk~al~wml~-~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 348 (972)
.+...|+|||..|+.||.. ... ...|||||||||||||+|+|+++......
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~---~~~~~ilaD~mglGKTiq~i~~l~~~~~~------------------------- 385 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRS---NLLGGILADDMGLGKTVQTIALLLSLLES------------------------- 385 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHh---ccCCCcccccccchhHHHHHHHHHhhhhc-------------------------
Confidence 3456799999999999994 433 35889999999999999999999752221
Q ss_pred CCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeE-EEEEeCCCCC---
Q 002077 349 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALS-VLIYHGGSRT--- 424 (972)
Q Consensus 349 ~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~-vlvy~G~~r~--- 424 (972)
.....++.|||||.+++.||.+|+.+|.+ .++ +++|+|....
T Consensus 386 -------------------------------~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~~~ 431 (866)
T COG0553 386 -------------------------------IKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSELDK 431 (866)
T ss_pred -------------------------------ccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCcccccH
Confidence 00224679999999999999999999987 577 9999998862
Q ss_pred --CChhhhcC------CCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCC
Q 002077 425 --KDPVELAK------YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNV 496 (972)
Q Consensus 425 --~~~~~l~~------~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~ 496 (972)
.....+.+ +||+||||+.+....
T Consensus 432 ~~~~~~~~~~~~~~~~~~v~itty~~l~~~~------------------------------------------------- 462 (866)
T COG0553 432 KREALRDLLKLHLVIIFDVVITTYELLRRFL------------------------------------------------- 462 (866)
T ss_pred HHHHHHHHhhhcccceeeEEechHHHHHHhh-------------------------------------------------
Confidence 12223333 899999999998621
Q ss_pred CCCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHH-------------------
Q 002077 497 NSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHG------------------- 555 (972)
Q Consensus 497 ~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~------------------- 555 (972)
.+...+..+.|+++|+||||+|||..|..+++++.+.+.+ .+.+||++++..+.
T Consensus 463 -----~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~ 537 (866)
T COG0553 463 -----VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAI 537 (866)
T ss_pred -----hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHH
Confidence 0112477889999999999999999999999999998887 44578876542211
Q ss_pred ------------------------HHHHHHHHHHHHhhhcccc--ccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHH
Q 002077 556 ------------------------YKKLQAVLRAIMLRRTKGT--FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 609 (972)
Q Consensus 556 ------------------------~~~L~~lL~~~~LRRtK~~--v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~ 609 (972)
..+|+.++++|+|||+|.+ ++ ..||++.+.+..++++.+|+.+|.....
T Consensus 538 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~-----~~Lp~k~e~~~~~~l~~~q~~~y~~~~~ 612 (866)
T COG0553 538 FTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVL-----KELPPKIEKVLECELSEEQRELYEALLE 612 (866)
T ss_pred HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHH-----HhCChhhhhhhhhcccHHHHHHHHHHHH
Confidence 1126788999999999999 54 4899999999999999999999999988
Q ss_pred ---HHHHHHHHHhhcCCc--ch--hHHHHHHHHHHHHhhcCCCccccccc-ccccccchHHHhhcCChHHHHHHHHhhcc
Q 002077 610 ---DSLKKFKAFADAGTV--NQ--NYANILLMLLRLRQACDHPLLVKEYD-FDSVGKISGEMAKRLPRDMLIDLLSRLET 681 (972)
Q Consensus 610 ---~~~~~~~~~~~~g~~--~~--~~~~il~~L~rLRq~c~hP~Lv~~~~-~~~~~~~~~e~~~~l~~e~~~~ll~~le~ 681 (972)
.....+......+.. .. ...+++..+++||++|+||.++.... ...
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~-------------------------- 666 (866)
T COG0553 613 GAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF-------------------------- 666 (866)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc--------------------------
Confidence 555555444332210 11 37889999999999999999987531 100
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADK 761 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~ 761 (972)
+..+.....+.....|.|.
T Consensus 667 ----~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 685 (866)
T COG0553 667 ----DRIVLLLREDKDFDYLKKP--------------------------------------------------------- 685 (866)
T ss_pred ----chhhhhhhcccccccccch---------------------------------------------------------
Confidence 0000000000000001111
Q ss_pred cCCCCCcccc-hHHHHHHHHH-HhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHh
Q 002077 762 SGILDNEYIS-SKIRTVLDIL-HTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQ 839 (972)
Q Consensus 762 ~~~~~~~~~S-sKi~~l~e~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~ 839 (972)
.+..+ .|+..+.++| .....++. .+|+|||+||+.++++|+..|+.
T Consensus 686 -----~~~~s~~k~~~l~~ll~~~~~~~~~---------------------------~~kvlifsq~t~~l~il~~~l~~ 733 (866)
T COG0553 686 -----LIQLSKGKLQALDELLLDKLLEEGH---------------------------YHKVLIFSQFTPVLDLLEDYLKA 733 (866)
T ss_pred -----hhhccchHHHHHHHHHHHHHHhhcc---------------------------cccEEEEeCcHHHHHHHHHHHHh
Confidence 11245 7999999999 66666653 14999999999999999999999
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccE
Q 002077 840 HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 840 ~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 919 (972)
.++.|++++|+++.+.|+.+|++|+++++..|||+|++|||+||||+.|++||++||||||+.+.||++|+|||||+++|
T Consensus 734 ~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v 813 (866)
T COG0553 734 LGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPV 813 (866)
T ss_pred cCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCccee
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhc
Q 002077 920 TVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 971 (972)
Q Consensus 920 ~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~ 971 (972)
.||+|+++|||||+|+.+|..|..+...+++. ........++.+|+..||.
T Consensus 814 ~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 814 KVYRLITRGTIEEKILELQEKKQELLDSLIDA-EGEKELSKLSIEDLLDLFS 864 (866)
T ss_pred EEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh-hcccchhhccHHHHHHHhc
Confidence 99999999999999999999999999999985 1234457899999999986
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-49 Score=432.03 Aligned_cols=387 Identities=27% Similarity=0.365 Sum_probs=286.5
Q ss_pred CCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCC
Q 002077 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (972)
Q Consensus 266 ~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d 345 (972)
+|+.+.+ .|+|||+.||.+.+.+.. -.||||||||||||||||+..+++..
T Consensus 191 ~d~kLvs-~LlPFQreGv~faL~RgG------R~llADeMGLGKTiQAlaIA~yyraE---------------------- 241 (689)
T KOG1000|consen 191 MDPKLVS-RLLPFQREGVIFALERGG------RILLADEMGLGKTIQALAIARYYRAE---------------------- 241 (689)
T ss_pred cCHHHHH-hhCchhhhhHHHHHhcCC------eEEEecccccchHHHHHHHHHHHhhc----------------------
Confidence 3455444 599999999999995432 14999999999999999999876643
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC
Q 002077 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (972)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~ 425 (972)
.|.|||||+||..-|.+++.+|+|.-+. +.+..+....
T Consensus 242 ---------------------------------------wplliVcPAsvrftWa~al~r~lps~~p--i~vv~~~~D~- 279 (689)
T KOG1000|consen 242 ---------------------------------------WPLLIVCPASVRFTWAKALNRFLPSIHP--IFVVDKSSDP- 279 (689)
T ss_pred ---------------------------------------CcEEEEecHHHhHHHHHHHHHhcccccc--eEEEecccCC-
Confidence 4599999999999999999999986423 3333333221
Q ss_pred Chhhh-cCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCC
Q 002077 426 DPVEL-AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGC 504 (972)
Q Consensus 426 ~~~~l-~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~ 504 (972)
+..+ ...-|+|+||+.+....
T Consensus 280 -~~~~~t~~~v~ivSye~ls~l~--------------------------------------------------------- 301 (689)
T KOG1000|consen 280 -LPDVCTSNTVAIVSYEQLSLLH--------------------------------------------------------- 301 (689)
T ss_pred -ccccccCCeEEEEEHHHHHHHH---------------------------------------------------------
Confidence 1122 23458999999986520
Q ss_pred CCCccceeeEEEEcccccccccchHHHHHHHhhhhcc----ceeeccCcCCcHHH-------------------------
Q 002077 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR----STIKIPISRNSLHG------------------------- 555 (972)
Q Consensus 505 ~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~----~~i~tPi~~~~~~~------------------------- 555 (972)
..|..-.|..||+||+|++|+.++++.+++..+.... .+.+||-.-.+.+.
T Consensus 302 ~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~ 381 (689)
T KOG1000|consen 302 DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDG 381 (689)
T ss_pred HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCc
Confidence 1244445999999999999999999999998877655 44466643222211
Q ss_pred --------------HHHHHHHHH-HHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhh
Q 002077 556 --------------YKKLQAVLR-AIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD 620 (972)
Q Consensus 556 --------------~~~L~~lL~-~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~ 620 (972)
...|..+|. .+|+||+|.+++. .||||...++.+ ....+-+.-+.+......
T Consensus 382 k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~-----qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~------- 448 (689)
T KOG1000|consen 382 KQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK-----QLPPKRREVVYV-SGGRIDARMDDLVKAAAD------- 448 (689)
T ss_pred cccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh-----hCCccceEEEEE-cCCccchHHHHHHHHhhh-------
Confidence 155666665 5899999999985 899996555443 333333333333222111
Q ss_pred cCCcchhHH-HHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccc
Q 002077 621 AGTVNQNYA-NILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVT 699 (972)
Q Consensus 621 ~g~~~~~~~-~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit 699 (972)
++..+... +-..+++..++
T Consensus 449 -~t~~~~~e~~~~~l~l~y~~----------------------------------------------------------- 468 (689)
T KOG1000|consen 449 -YTKVNSMERKHESLLLFYSL----------------------------------------------------------- 468 (689)
T ss_pred -cchhhhhhhhhHHHHHHHHH-----------------------------------------------------------
Confidence 11000000 00000000000
Q ss_pred cCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHH
Q 002077 700 MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLD 779 (972)
Q Consensus 700 ~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e 779 (972)
..-.|+.++.+
T Consensus 469 ---------------------------------------------------------------------tgiaK~~av~e 479 (689)
T KOG1000|consen 469 ---------------------------------------------------------------------TGIAKAAAVCE 479 (689)
T ss_pred ---------------------------------------------------------------------hcccccHHHHH
Confidence 12357888877
Q ss_pred HHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q 002077 780 ILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRA 859 (972)
Q Consensus 780 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~ 859 (972)
.|....--+ ..++.|.|||+....+||-|+..+.+.++.+.||||+++...|+.+
T Consensus 480 yi~~~~~l~-------------------------d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll 534 (689)
T KOG1000|consen 480 YILENYFLP-------------------------DAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLL 534 (689)
T ss_pred HHHhCcccc-------------------------cCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHH
Confidence 776621111 1234599999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHH
Q 002077 860 VKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939 (972)
Q Consensus 860 I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~ 939 (972)
++.|+.+.++.|-++|..|+|+||.|++|+.|+|.+++|||....||.||+||+||+..|.|++|+++||+||.++.+.+
T Consensus 535 ~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 535 CQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 002077 940 DKRKMVASA 948 (972)
Q Consensus 940 ~K~~li~~a 948 (972)
+|.+.+.++
T Consensus 615 ~KL~vl~s~ 623 (689)
T KOG1000|consen 615 QKLDVLGSV 623 (689)
T ss_pred HHHHHHhhc
Confidence 999977665
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.9e-48 Score=479.45 Aligned_cols=384 Identities=19% Similarity=0.263 Sum_probs=281.4
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
.+.|+|||+.++.+++.+.. ...||||||||||||+|++++......
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~-----~R~LLADEvGLGKTIeAglil~~l~~~---------------------------- 196 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHA-----PRVLLADEVGLGKTIEAGMIIHQQLLT---------------------------- 196 (956)
T ss_pred CCCCCHHHHHHHHHHhhccC-----CCEEEEeCCcCcHHHHHHHHHHHHHHc----------------------------
Confidence 67899999999988876543 346999999999999999888754321
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCC----CCh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT----KDP 427 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~----~~~ 427 (972)
+..+++|||||++|+.||..|+.++|. +.+.+|.+..-. ...
T Consensus 197 ------------------------------g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~~~ 242 (956)
T PRK04914 197 ------------------------------GRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHDAD 242 (956)
T ss_pred ------------------------------CCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhccccc
Confidence 445789999999999999999988874 666676654311 111
Q ss_pred hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCC
Q 002077 428 VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL 507 (972)
Q Consensus 428 ~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L 507 (972)
..+..+++||+||+.+++.... ...+
T Consensus 243 ~pf~~~~~vI~S~~~l~~~~~~------------------------------------------------------~~~l 268 (956)
T PRK04914 243 NPFETEQLVICSLDFLRRNKQR------------------------------------------------------LEQA 268 (956)
T ss_pred CccccCcEEEEEHHHhhhCHHH------------------------------------------------------HHHH
Confidence 3455789999999999752100 0014
Q ss_pred ccceeeEEEEccccccccc---chHHHHHHHhhhhcc----ceeeccCcCCcHHHHHHH---------------------
Q 002077 508 AKVGWFRVVLDEAQTIKNH---RTQVARACCSLRAKR----STIKIPISRNSLHGYKKL--------------------- 559 (972)
Q Consensus 508 ~~~~w~rVIlDEAH~IKN~---~t~~~ka~~~L~a~~----~~i~tPi~~~~~~~~~~L--------------------- 559 (972)
....|+.|||||||++||. .|+.++++..|.... .+++||+.++..+.|..|
T Consensus 269 ~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~ 348 (956)
T PRK04914 269 LAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQY 348 (956)
T ss_pred hhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhh
Confidence 4567999999999999953 467788888886443 677999987755443221
Q ss_pred ------------------------HHHH---------------------------H---------HHHhhhccccccCCC
Q 002077 560 ------------------------QAVL---------------------------R---------AIMLRRTKGTFIDGQ 579 (972)
Q Consensus 560 ------------------------~~lL---------------------------~---------~~~LRRtK~~v~~g~ 579 (972)
..+| + .+|+|+|+.++.
T Consensus 349 ~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~--- 425 (956)
T PRK04914 349 RPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK--- 425 (956)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc---
Confidence 1111 1 245555655543
Q ss_pred CcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccc
Q 002077 580 PIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKI 659 (972)
Q Consensus 580 pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~ 659 (972)
.+|++..+.+.+++.++++..+... .. ..+++ +.+|.....
T Consensus 426 ---~fp~R~~~~~~l~~~~~y~~~~~~~---~~-----------------------~~~~~-~l~pe~~~~--------- 466 (956)
T PRK04914 426 ---GFPKRELHPIPLPLPEQYQTAIKVS---LE-----------------------ARARD-MLYPEQIYQ--------- 466 (956)
T ss_pred ---CCCcCceeEeecCCCHHHHHHHHHh---HH-----------------------HHHHh-hcCHHHHHH---------
Confidence 4777777777777766544433210 00 01111 111110000
Q ss_pred hHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccccccc
Q 002077 660 SGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKT 739 (972)
Q Consensus 660 ~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~ 739 (972)
.++.
T Consensus 467 ------------------~~~~---------------------------------------------------------- 470 (956)
T PRK04914 467 ------------------EFED---------------------------------------------------------- 470 (956)
T ss_pred ------------------HHhh----------------------------------------------------------
Confidence 0000
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCce
Q 002077 740 TLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIK 819 (972)
Q Consensus 740 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 819 (972)
....+..++|++.|+++|+... + .|
T Consensus 471 ------------------------~~~~~~~d~Ki~~L~~~L~~~~--~-----------------------------~K 495 (956)
T PRK04914 471 ------------------------NATWWNFDPRVEWLIDFLKSHR--S-----------------------------EK 495 (956)
T ss_pred ------------------------hhhccccCHHHHHHHHHHHhcC--C-----------------------------Ce
Confidence 0000114689999999997653 2 39
Q ss_pred EEEEecchHHHHHHHHHH-HhCCCcEEEEeCCCCHHHHHHHHHhhhcCC-CeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 820 SIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 820 vIVFSqft~~ld~L~~~L-~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~-~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
+||||++..+++.|...| ...||++..++|+|+..+|+++++.|++++ ++.|||. +++||+|+||+.|+|||+||+|
T Consensus 496 vLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIs-TdvgseGlNlq~a~~VInfDlP 574 (956)
T PRK04914 496 VLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLC-SEIGSEGRNFQFASHLVLFDLP 574 (956)
T ss_pred EEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEe-chhhccCCCcccccEEEEecCC
Confidence 999999999999999999 467999999999999999999999999854 6777665 5999999999999999999999
Q ss_pred CCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhc
Q 002077 898 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFG 950 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g 950 (972)
|||..++|||||+||+||+++|.||.++.++|+|++|+++...|.+++...++
T Consensus 575 ~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~ 627 (956)
T PRK04914 575 FNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCP 627 (956)
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCC
Confidence 99999999999999999999999999999999999999999999877766554
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-47 Score=433.21 Aligned_cols=539 Identities=24% Similarity=0.336 Sum_probs=339.9
Q ss_pred cCchhHHHHHHHHHHhh-------hcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCC
Q 002077 274 NLLKHQKIALAWMLQKE-------TRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDD 346 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e-------~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 346 (972)
-|.|||+-|+.||...- +. ..++|+|||+.||||||+|+|+++--...+
T Consensus 254 v~kPHQiGGiRFlYDN~iESl~rykk-SsGFGCILAHSMGLGKTlQVisF~diflRh----------------------- 309 (1387)
T KOG1016|consen 254 VLKPHQIGGIRFLYDNTIESLGRYKK-SSGFGCILAHSMGLGKTLQVISFSDIFLRH----------------------- 309 (1387)
T ss_pred hcCccccCcEEEehhhHHHHHhhccc-cCCcceeeeeccccCceeEEeehhHHHhhc-----------------------
Confidence 49999999999986432 22 247999999999999999999998754432
Q ss_pred CCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCC--------CCCeEEEEE
Q 002077 347 DNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPD--------KAALSVLIY 418 (972)
Q Consensus 347 ~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~--------~~~l~vlvy 418 (972)
.++++.|+|+|-..|.||-.||..|+|. ...+.|.++
T Consensus 310 -----------------------------------T~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~L 354 (1387)
T KOG1016|consen 310 -----------------------------------TKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLL 354 (1387)
T ss_pred -----------------------------------CccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEe
Confidence 5678899999999999999999999985 113455555
Q ss_pred eCCCCCCCh------hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCC
Q 002077 419 HGGSRTKDP------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGK 492 (972)
Q Consensus 419 ~G~~r~~~~------~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~ 492 (972)
....++-+. .+.....|.++.|+.++--..+.- | ++-++.++.|+.+.+-
T Consensus 355 nD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~--------------------~----~~grpkkt~kr~~~~~ 410 (1387)
T KOG1016|consen 355 NDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTL--------------------P----KKGRPKKTLKRISSGF 410 (1387)
T ss_pred cCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcc--------------------c----ccCCccccccccCCcc
Confidence 444332221 233567799999999865321100 0 0000111111111110
Q ss_pred CCCCC-----CCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhccc--eeeccCcCCcHHHH---------
Q 002077 493 KGNVN-----SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRS--TIKIPISRNSLHGY--------- 556 (972)
Q Consensus 493 k~~~~-----~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~~--~i~tPi~~~~~~~~--------- 556 (972)
-..+. +....-...|.+-+.++||+||+|.|||..+..+.|+..++.+++ +++-|+++|..+.|
T Consensus 411 i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~ 490 (1387)
T KOG1016|consen 411 IKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPK 490 (1387)
T ss_pred cCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheecccc
Confidence 00000 001111234677789999999999999999999999999999883 33556666544433
Q ss_pred ------------------------------------HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHH
Q 002077 557 ------------------------------------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEE 600 (972)
Q Consensus 557 ------------------------------------~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~E 600 (972)
.-|..+|..|+-||+..-+. +.||.+.+.++.|.+|..|
T Consensus 491 yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk-----~~LP~k~EyViLvr~s~iQ 565 (1387)
T KOG1016|consen 491 YLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK-----KILPEKKEYVILVRKSQIQ 565 (1387)
T ss_pred ccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh-----hhcccccceEEEEeHHHHH
Confidence 34677899999999887554 5899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHH-hh
Q 002077 601 WAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLS-RL 679 (972)
Q Consensus 601 r~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~-~l 679 (972)
|++|..+.....+ +....+. ...+-|.++.---++.+||..+.++.... ....+.-.++-+ ..
T Consensus 566 R~LY~~Fm~d~~r---~~~~~~~---~~~NPLkAF~vCcKIWNHPDVLY~~l~k~----------~~a~e~dl~vee~~~ 629 (1387)
T KOG1016|consen 566 RQLYRNFMLDAKR---EIAANND---AVFNPLKAFSVCCKIWNHPDVLYRLLEKK----------KRAEEDDLRVEEMKF 629 (1387)
T ss_pred HHHHHHHHHHHHH---hhccccc---cccChHHHHHHHHHhcCChHHHHHHHHHh----------hhhhhhhhhHHHHhh
Confidence 9999887644432 2222221 11244445555556667998766432210 000000000000 00
Q ss_pred cccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcc
Q 002077 680 ETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFA 759 (972)
Q Consensus 680 e~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~ 759 (972)
......|+--..++..+-.+ +... .+++.-+ +...-.....+.+.
T Consensus 630 ag~~~~~~P~~~~~~~~s~~------------------------------laSs--~~k~~n~---t~kp~~s~~~p~f~ 674 (1387)
T KOG1016|consen 630 AGLQQQQSPFNSIPSNPSTP------------------------------LASS--TSKSANK---TKKPRGSKKAPKFD 674 (1387)
T ss_pred hcccccCCCCCCCCCCCCCc------------------------------ccch--hhhhhcc---cCCcccCcCCCCcc
Confidence 01122232211111111000 0000 0000000 00000000001111
Q ss_pred cccCCCCCcccchHHHHHHHHHHhh----ccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHH
Q 002077 760 DKSGILDNEYISSKIRTVLDILHTQ----CELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVEN 835 (972)
Q Consensus 760 ~~~~~~~~~~~SsKi~~l~e~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~ 835 (972)
+... +....+ .+..+++... ++.+.+|-++-- +.. ....-+.|+|||||-...||+|+.
T Consensus 675 ee~~--e~~~y~---~w~~el~~nYq~gvLen~pk~V~~~~-----------~~d-es~~~g~kil~fSq~l~~Ld~iee 737 (1387)
T KOG1016|consen 675 EEDE--EVEKYS---DWTFELFENYQEGVLENGPKIVISLE-----------ILD-ESTQIGEKILIFSQNLTALDMIEE 737 (1387)
T ss_pred cccc--cccchh---hHHHHHHhhhhcccccCCCceEEEEe-----------eec-cccccCceEEEeecchhHHHHHHH
Confidence 1000 000000 1222222211 122221110000 000 001113499999999999999999
Q ss_pred HHHhC------------------CCcEEEEeCCCCHHHHHHHHHhhhcCCCee-EEEEecCccccccCCCCCCEEEEecC
Q 002077 836 SLNQH------------------CIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 836 ~L~~~------------------gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~-VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
.|.+. .+.|.+++|+++...|+++|++|+..+++. .||+|++||..|+||..|+++|++|.
T Consensus 738 il~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda 817 (1387)
T KOG1016|consen 738 ILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDA 817 (1387)
T ss_pred HHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEe
Confidence 99865 345899999999999999999999988888 89999999999999999999999999
Q ss_pred CCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhc
Q 002077 897 WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 971 (972)
Q Consensus 897 ~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~ 971 (972)
.|||....||++|++|+||+|+++||||++.+++|.+|+.+|-.|+.|-+.++++-.. ...++.-||..|++
T Consensus 818 ~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np---~an~s~Ke~enLl~ 889 (1387)
T KOG1016|consen 818 CWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANP---DANISQKELENLLM 889 (1387)
T ss_pred ecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCc---cccccHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999976433 45678888888764
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=2e-45 Score=439.28 Aligned_cols=191 Identities=32% Similarity=0.529 Sum_probs=153.0
Q ss_pred cccccCCCCCC-CcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCccccc
Q 002077 684 AICCVCSDPPE-DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKS 762 (972)
Q Consensus 684 ~~C~iC~d~~~-~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 762 (972)
..|.+|.+.+. .-.+..|||.+|..|..-|... .-.||. |....
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~--~ksi~-------------------------------- 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPI--CKSIK-------------------------------- 1198 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcc--hhhhh--------------------------------
Confidence 34888888776 5677888888888888776532 234442 22100
Q ss_pred CCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCC
Q 002077 763 GILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCI 842 (972)
Q Consensus 763 ~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi 842 (972)
.-.++||..+...+..+.-... -.|+||||||...+|.++.++.-++|
T Consensus 1199 -----~dfg~kI~~v~~~il~iK~k~~---------------------------qekvIvfsqws~~ldV~e~~~~~N~I 1246 (1394)
T KOG0298|consen 1199 -----GDFGTKIDSVVIAILYIKFKNE---------------------------QEKVIVFSQWSVVLDVKELRYLMNLI 1246 (1394)
T ss_pred -----hhhccCchhHHHHHHHHhccCc---------------------------CceEEEEEehHHHHHHHHHHHHhhhh
Confidence 0145788888776666544332 24999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 843 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 843 ~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
.+.+-.++ +.-...+..|. ++.|||+-.+.|+-||||..|.|||+++|--||..|.||+||+|||||++|+.|+
T Consensus 1247 ~~~~~~~t---~d~~dc~~~fk---~I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~ 1320 (1394)
T KOG0298|consen 1247 KKQLDGET---EDFDDCIICFK---SIDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVH 1320 (1394)
T ss_pred HhhhccCC---cchhhhhhhcc---cceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhh
Confidence 98666553 45557888887 4999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHHHHH
Q 002077 923 RLTIRDTVEDRILKLQDDKRKMVAS 947 (972)
Q Consensus 923 rli~~dTIEe~Il~lq~~K~~li~~ 947 (972)
+|++.+||||.|+.+...|.+....
T Consensus 1321 ~fiv~~TvEe~Il~l~~~~ee~l~~ 1345 (1394)
T KOG0298|consen 1321 RFIVNETVEENILSLITSKEETLTK 1345 (1394)
T ss_pred hhhhccchHHHHHHHhhhhHHHHhh
Confidence 9999999999999999888775543
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.7e-35 Score=350.16 Aligned_cols=362 Identities=16% Similarity=0.198 Sum_probs=260.8
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
.+.|||||.+|+.||.... ..++|||+..||.|||+++|+++...
T Consensus 253 ~~~LRpYQ~eAl~~~~~~g----r~r~GIIvLPtGaGKTlvai~aa~~l------------------------------- 297 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKSLVGVTAACTV------------------------------- 297 (732)
T ss_pred CCCcCHHHHHHHHHHHhcC----CCCCcEEEeCCCCChHHHHHHHHHHh-------------------------------
Confidence 4679999999999997421 23679999999999999999988631
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l 430 (972)
.++||||||.+ |+.||.+||.+|+... ...+..|.|..+... .
T Consensus 298 --------------------------------~k~tLILvps~~Lv~QW~~ef~~~~~l~-~~~I~~~tg~~k~~~---~ 341 (732)
T TIGR00603 298 --------------------------------KKSCLVLCTSAVSVEQWKQQFKMWSTID-DSQICRFTSDAKERF---H 341 (732)
T ss_pred --------------------------------CCCEEEEeCcHHHHHHHHHHHHHhcCCC-CceEEEEecCccccc---c
Confidence 14599999976 5899999999997432 456778888654432 2
Q ss_pred cCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccc
Q 002077 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (972)
Q Consensus 431 ~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L~~~ 510 (972)
...+|+|+||+++.+...+... .......|...
T Consensus 342 ~~~~VvVtTYq~l~~~~~r~~~-----------------------------------------------~~~~l~~l~~~ 374 (732)
T TIGR00603 342 GEAGVVVSTYSMVAHTGKRSYE-----------------------------------------------SEKVMEWLTNR 374 (732)
T ss_pred cCCcEEEEEHHHhhcccccchh-----------------------------------------------hhHHHHHhccc
Confidence 4589999999999764221000 00000124456
Q ss_pred eeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHHHHHHHHHHHHHhhhccccccCCCCcccCCCCe
Q 002077 511 GWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 588 (972)
Q Consensus 511 ~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~ 588 (972)
.|++||+||||++.+ ....+.+..+.+.+ .+++||+..+.. ...|..++.|.+.+-...++++. --|.+..
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~~--~~~L~~LiGP~vye~~~~eLi~~---G~LA~~~ 447 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMELQKK---GFIANVQ 447 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCCc--hhhhhhhcCCeeeecCHHHHHhC---Cccccce
Confidence 799999999999965 33444666666665 788999975432 34466667776655555554422 1466666
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCC
Q 002077 589 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLP 668 (972)
Q Consensus 589 ~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~ 668 (972)
...++|+|++++..-|... .. + ...+ | +.
T Consensus 448 ~~ev~v~~t~~~~~~yl~~--------------~~--~--~k~~-----l--~~-------------------------- 476 (732)
T TIGR00603 448 CAEVWCPMTPEFYREYLRE--------------NS--R--KRML-----L--YV-------------------------- 476 (732)
T ss_pred EEEEEecCCHHHHHHHHHh--------------cc--h--hhhH-----H--hh--------------------------
Confidence 7778999998764444211 00 0 0000 0 00
Q ss_pred hHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCC
Q 002077 669 RDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDD 748 (972)
Q Consensus 669 ~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~ 748 (972)
T Consensus 477 -------------------------------------------------------------------------------- 476 (732)
T TIGR00603 477 -------------------------------------------------------------------------------- 476 (732)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchH
Q 002077 749 GGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTR 828 (972)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~ 828 (972)
....|+.++..+++.+...+. |+||||+++.
T Consensus 477 --------------------~np~K~~~~~~Li~~he~~g~-----------------------------kiLVF~~~~~ 507 (732)
T TIGR00603 477 --------------------MNPNKFRACQFLIRFHEQRGD-----------------------------KIIVFSDNVF 507 (732)
T ss_pred --------------------hChHHHHHHHHHHHHHhhcCC-----------------------------eEEEEeCCHH
Confidence 023588888887776544444 9999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC-CCChHHHHh
Q 002077 829 MLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-NPTTEDQAV 907 (972)
Q Consensus 829 ~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W-Np~~e~QAi 907 (972)
.++.+...| +. ..|+|.|+..+|.+++++|+.++.+.+|++| ++|++|+||+.|++||++++++ |+..+.||+
T Consensus 508 ~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRl 581 (732)
T TIGR00603 508 ALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRL 581 (732)
T ss_pred HHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeCCCCCCHHHHHHHh
Confidence 888888877 33 4589999999999999999977678888887 9999999999999999999986 999999999
Q ss_pred HhhcccCCcc-----cEEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 002077 908 DRAHRIGQTR-----PVTVTRLTIRDTVEDRILKLQDDKRKMVA 946 (972)
Q Consensus 908 gRi~RiGQ~k-----~V~V~rli~~dTIEe~Il~lq~~K~~li~ 946 (972)
||+.|.+..+ +..+|.|+.+||.|+..- +.+++-|++
T Consensus 582 GRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s--~~Rq~fl~~ 623 (732)
T TIGR00603 582 GRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYS--TKRQRFLVD 623 (732)
T ss_pred cccccCCCCCccccccceEEEEecCCchHHHHH--HHHHHHHHH
Confidence 9999999764 379999999999999883 344444543
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.8e-36 Score=334.32 Aligned_cols=256 Identities=36% Similarity=0.567 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHhh------hcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 278 HQKIALAWMLQKE------TRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 278 yQk~al~wml~~e------~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
||+.||.||+.++ ......+|||||||||+|||+++|+++.......
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~--------------------------- 53 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEF--------------------------- 53 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCC---------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcc---------------------------
Confidence 8999999999998 2223468999999999999999999998543220
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCC--CCCChhh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVE 429 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~--r~~~~~~ 429 (972)
.....+++|||||.+++.||..||.+|+++. .+++++|+|.. +......
T Consensus 54 ----------------------------~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 104 (299)
T PF00176_consen 54 ----------------------------PQRGEKKTLIVVPSSLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKNQ 104 (299)
T ss_dssp ----------------------------TTSS-S-EEEEE-TTTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSSS
T ss_pred ----------------------------ccccccceeEeeccchhhhhhhhhccccccc-cccccccccccccccccccc
Confidence 0012245999999999999999999999543 67999999987 3334456
Q ss_pred hcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCcc
Q 002077 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (972)
Q Consensus 430 l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L~~ 509 (972)
+..++|+|+||+.+...... .....|..
T Consensus 105 ~~~~~vvi~ty~~~~~~~~~----------------------------------------------------~~~~~l~~ 132 (299)
T PF00176_consen 105 LPKYDVVITTYETLRKARKK----------------------------------------------------KDKEDLKQ 132 (299)
T ss_dssp CCCSSEEEEEHHHHH--TST----------------------------------------------------HTTHHHHT
T ss_pred cccceeeecccccccccccc----------------------------------------------------cccccccc
Confidence 78899999999999821000 01123566
Q ss_pred ceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHH--------------------------------
Q 002077 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHG-------------------------------- 555 (972)
Q Consensus 510 ~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~-------------------------------- 555 (972)
++|++|||||||.+||..+..++++..|.+.+ .+++||+.++..+.
T Consensus 133 ~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~ 212 (299)
T PF00176_consen 133 IKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYE 212 (299)
T ss_dssp SEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHH
T ss_pred ccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccc
Confidence 78999999999999999999999999999777 45589998764432
Q ss_pred -HHHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHH
Q 002077 556 -YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 634 (972)
Q Consensus 556 -~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~ 634 (972)
..+|+.+++.+++||++.++. ..||+..+.++.++|+++|+++|+.+....+..+.... +...++...++..
T Consensus 213 ~~~~L~~~l~~~~~r~~~~d~~-----~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 285 (299)
T PF00176_consen 213 NIERLRELLSEFMIRRTKKDVE-----KELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSLLQI 285 (299)
T ss_dssp HHHHHHHHHCCCEECHCGGGGC-----TTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHHHHH
T ss_pred cccccccccchhhhhhhccccc-----ccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHH
Confidence 256777888899999999883 47999999999999999999999988776654433322 2345678999999
Q ss_pred HHHHHhhcCCCccc
Q 002077 635 LLRLRQACDHPLLV 648 (972)
Q Consensus 635 L~rLRq~c~hP~Lv 648 (972)
+.+|||+|+||.|+
T Consensus 286 ~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 286 LKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHHH-THHC
T ss_pred HHHHHHHhCCcccC
Confidence 99999999999875
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.7e-30 Score=323.08 Aligned_cols=455 Identities=17% Similarity=0.191 Sum_probs=284.0
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
.+++|+||+..+...+.. ++|+++++|+|||++++.++.....
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--------n~lv~~ptG~GKT~~a~~~i~~~l~----------------------------- 55 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--------NTLVVLPTGLGKTAIALLVIAERLH----------------------------- 55 (773)
T ss_pred cCCccHHHHHHHHHHhcC--------CeEEEcCCCccHHHHHHHHHHHHHH-----------------------------
Confidence 457999999998887732 4799999999999999888764321
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCCh-hh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE 429 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~-~~ 429 (972)
.+.+++|||||. .|+.||..++.+++... ..++.+++|....... ..
T Consensus 56 ------------------------------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~r~~~ 104 (773)
T PRK13766 56 ------------------------------KKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKIVVFTGEVSPEKRAEL 104 (773)
T ss_pred ------------------------------hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceEEEEeCCCCHHHHHHH
Confidence 223569999997 79999999999987532 3578888886544322 33
Q ss_pred hcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCcc
Q 002077 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (972)
Q Consensus 430 l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L~~ 509 (972)
+..++|+|+|+.++.+++.. +.+..
T Consensus 105 ~~~~~iiv~T~~~l~~~l~~-------------------------------------------------------~~~~~ 129 (773)
T PRK13766 105 WEKAKVIVATPQVIENDLIA-------------------------------------------------------GRISL 129 (773)
T ss_pred HhCCCEEEECHHHHHHHHHc-------------------------------------------------------CCCCh
Confidence 56889999999999764311 11223
Q ss_pred ceeeEEEEcccccccccchHHHHHHHhhhhcc-----ceeeccCcCCcHHHHHHHHHHHHHHHhhhccccc---cCCCCc
Q 002077 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKR-----STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF---IDGQPI 581 (972)
Q Consensus 510 ~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~-----~~i~tPi~~~~~~~~~~L~~lL~~~~LRRtK~~v---~~g~pi 581 (972)
-.|..||+||||++.+..+..+.+-....... .+++||... ...+..++....+++..-.. .+-.+
T Consensus 130 ~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-----~~~i~~~~~~L~i~~v~~~~~~~~~v~~- 203 (773)
T PRK13766 130 EDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-----EEKIKEVCENLGIEHVEVRTEDDPDVKP- 203 (773)
T ss_pred hhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-----HHHHHHHHHhCCceEEEEcCCCChhHHh-
Confidence 35889999999999875544433322221111 567888753 34566666665444322100 01111
Q ss_pred ccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcc-----hhHHHHHHHHHHHHhhcCCCcccccccccc-
Q 002077 582 INLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVN-----QNYANILLMLLRLRQACDHPLLVKEYDFDS- 655 (972)
Q Consensus 582 ~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~-----~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~- 655 (972)
.+.+..+..+.+.+++..+.++..+.......+......|... -....++.....+++......- ..+..-.
T Consensus 204 -~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~ 281 (773)
T PRK13766 204 -YVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS-EGYEAISI 281 (773)
T ss_pred -hhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch-HHHHHHHH
Confidence 1334567778899999999998888776666665554444321 0111121111222222211000 0000000
Q ss_pred ---cc--cchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 656 ---VG--KISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 656 ---~~--~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
.. ....+.........+..++..+.......+ ...+...........+.+.
T Consensus 282 ~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~-----~~~~~~~l~~~~~~~~~~~------------------- 337 (773)
T PRK13766 282 LAEAMKLRHAVELLETQGVEALRRYLERLREEARSSG-----GSKASKRLVEDPRFRKAVR------------------- 337 (773)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccC-----CcHHHHHHHhCHHHHHHHH-------------------
Confidence 00 000011111112223333333321100000 0000000000000000000
Q ss_pred cccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCcccc
Q 002077 731 GADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHS 810 (972)
Q Consensus 731 ~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (972)
.+. .-....+|++.|.++|++..+...
T Consensus 338 ---------~~~-----------------------~~~~~~pK~~~L~~il~~~~~~~~--------------------- 364 (773)
T PRK13766 338 ---------KAK-----------------------ELDIEHPKLEKLREIVKEQLGKNP--------------------- 364 (773)
T ss_pred ---------HHH-----------------------hcccCChHHHHHHHHHHHHHhcCC---------------------
Confidence 000 001145899999999998774322
Q ss_pred CCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC--------CCHHHHHHHHHhhhcCCCeeEEEEecCccccc
Q 002077 811 KSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT--------MSLPARDRAVKDFNTDREITVMLMSLKAGNLG 882 (972)
Q Consensus 811 ~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs--------~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~G 882 (972)
+.|+||||++..+++.|...|...|+.+..++|. |+..+|.+++++|+++ ...||+ ++.++++|
T Consensus 365 ------~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g-~~~vLv-aT~~~~eG 436 (773)
T PRK13766 365 ------DSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG-EFNVLV-STSVAEEG 436 (773)
T ss_pred ------CCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC-CCCEEE-ECChhhcC
Confidence 3499999999999999999999999999999997 8889999999999976 666655 66899999
Q ss_pred cCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHH
Q 002077 883 LNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMV 945 (972)
Q Consensus 883 LNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li 945 (972)
+|++.+++||+|||+||+....|++||++|.|+ +.||.|+.++|+||.++....+|.+.+
T Consensus 437 ldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 437 LDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 999999999999999999999998888888765 789999999999999988777666655
No 23
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.98 E-value=1.3e-33 Score=332.11 Aligned_cols=366 Identities=27% Similarity=0.374 Sum_probs=265.9
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCC
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (972)
..|.+||.+|++|+....... --+||||+||||||+++|.++......
T Consensus 294 g~L~~~qleGln~L~~~ws~~---~~~ilADEmgLgktVqsi~fl~sl~~~----------------------------- 341 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPG---VDAILADEMGLGKTVQSIVFLYSLPKE----------------------------- 341 (696)
T ss_pred ccccccchhhhhhhhcccccC---CCcccchhhcCCceeeEEEEEeecccc-----------------------------
Confidence 569999999999999776643 337999999999999998877532211
Q ss_pred cccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcC
Q 002077 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (972)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~ 432 (972)
.....+.||++|.+.+.+|..|+..|.+ .+.|..|+|....+.......
T Consensus 342 ----------------------------~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~r~iirepe 390 (696)
T KOG0383|consen 342 ----------------------------IHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKSRAIIREPE 390 (696)
T ss_pred ----------------------------cCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccchhhhhccc
Confidence 0122568999999999999999999988 688889999876543211100
Q ss_pred ---CC-EEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCc
Q 002077 433 ---YD-VVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 508 (972)
Q Consensus 433 ---~D-VVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L~ 508 (972)
-| -+-++-.+... ++. ...+....-..++....+...+.
T Consensus 391 ~s~ed~~~~~~~~i~~~---------------------------------~~~----s~~k~~vl~~s~~~~~~~~~il~ 433 (696)
T KOG0383|consen 391 FSFEDSSIKSSPKISEM---------------------------------KTE----SSAKFHVLLPSYETIEIDQSILF 433 (696)
T ss_pred ccccccccccCCccccc---------------------------------cch----hhcccccCCCchhhcccCHHHHh
Confidence 00 00000000000 000 00011111222333444556789
Q ss_pred cceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH------------------------------
Q 002077 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY------------------------------ 556 (972)
Q Consensus 509 ~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~------------------------------ 556 (972)
.+.|..+|+||+|.+||..|...+.+.+....+ .++++|.+++..+.|
T Consensus 434 ~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~ 513 (696)
T KOG0383|consen 434 SVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQI 513 (696)
T ss_pred hhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHH
Confidence 999999999999999999988887776665555 556778776644432
Q ss_pred HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Q 002077 557 KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLL 636 (972)
Q Consensus 557 ~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~ 636 (972)
+.|+.++.++||||.|.++++ +.|.|++-++.+.|++-|.++|+.++..--.. +.+ | .+....+..++
T Consensus 514 ~~l~~l~~p~~lrr~k~d~l~-----~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~---l~~-~---~~~~s~~n~~m 581 (696)
T KOG0383|consen 514 KKLHLLLCPHMLRRLKLDVLK-----PMPLKTELIGRVELSPCQKKYYKKILTRNWQG---LLA-G---VHQYSLLNIVM 581 (696)
T ss_pred HhhccccCchhhhhhhhhhcc-----CCCccceeEEEEecCHHHHHHHHHHHcCChHH---Hhh-c---chhHHHHHHHH
Confidence 667888999999999999986 69999999999999999999999987744322 222 2 24455667889
Q ss_pred HHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcC
Q 002077 637 RLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG 716 (972)
Q Consensus 637 rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~ 716 (972)
.||+.|+||++....... ... ...+...|.
T Consensus 582 el~K~~~hpy~~~~~e~~--~~~------------~~~~~~~l~------------------------------------ 611 (696)
T KOG0383|consen 582 ELRKQCNHPYLSPLEEPL--EEN------------GEYLGSALI------------------------------------ 611 (696)
T ss_pred HHHHhhcCcccCcccccc--ccc------------hHHHHHHHH------------------------------------
Confidence 999999999998751110 000 000000000
Q ss_pred CCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhh
Q 002077 717 DDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEI 796 (972)
Q Consensus 717 ~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~ 796 (972)
..+.|+..|...++.+...|+
T Consensus 612 ----------------------------------------------------k~~~k~~~l~~~~~~l~~~gh------- 632 (696)
T KOG0383|consen 612 ----------------------------------------------------KASGKLTLLLKMLKKLKSSGH------- 632 (696)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHhcch-------
Confidence 146788889999999888887
Q ss_pred hcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCeeEEEEe
Q 002077 797 HDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMS 875 (972)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~-~~~~~VlLiS 875 (972)
||+||+|++.+||+|+..+...+ .|.|+||..+...|+.+|.+||. +..-++||+|
T Consensus 633 ----------------------rvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cflls 689 (696)
T KOG0383|consen 633 ----------------------RVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLS 689 (696)
T ss_pred ----------------------hhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEee
Confidence 99999999999999999999999 99999999999999999999996 4578899999
Q ss_pred cCccccc
Q 002077 876 LKAGNLG 882 (972)
Q Consensus 876 lkagg~G 882 (972)
++|||+|
T Consensus 690 tra~g~g 696 (696)
T KOG0383|consen 690 TRAGGLG 696 (696)
T ss_pred cccccCC
Confidence 9999987
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.6e-23 Score=234.30 Aligned_cols=460 Identities=20% Similarity=0.200 Sum_probs=290.6
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
.+.-|.||..-++-.+.+. .+++-..|||||+.|+.+|+.....
T Consensus 13 ~ie~R~YQ~~i~a~al~~N--------tLvvlPTGLGKT~IA~~V~~~~l~~---------------------------- 56 (542)
T COG1111 13 TIEPRLYQLNIAAKALFKN--------TLVVLPTGLGKTFIAAMVIANRLRW---------------------------- 56 (542)
T ss_pred cccHHHHHHHHHHHHhhcC--------eEEEecCCccHHHHHHHHHHHHHHh----------------------------
Confidence 4578999999888777542 4999999999999998888743321
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCCh-hh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE 429 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~-~~ 429 (972)
. .+..|+++|+ -|+.|-..-+.+.+.-. .-.+..+.|.-+.... ..
T Consensus 57 ------------------------------~-~~kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~~i~~ltGev~p~~R~~~ 104 (542)
T COG1111 57 ------------------------------F-GGKVLFLAPTKPLVLQHAEFCRKVTGIP-EDEIAALTGEVRPEEREEL 104 (542)
T ss_pred ------------------------------c-CCeEEEecCCchHHHHHHHHHHHHhCCC-hhheeeecCCCChHHHHHH
Confidence 1 1258999996 59999999999987543 5678889998766544 45
Q ss_pred hcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCcc
Q 002077 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (972)
Q Consensus 430 l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L~~ 509 (972)
+.+..|++.|.+++.|++.. +.+.-
T Consensus 105 w~~~kVfvaTPQvveNDl~~-------------------------------------------------------Grid~ 129 (542)
T COG1111 105 WAKKKVFVATPQVVENDLKA-------------------------------------------------------GRIDL 129 (542)
T ss_pred HhhCCEEEeccHHHHhHHhc-------------------------------------------------------CccCh
Confidence 67899999999999987522 22334
Q ss_pred ceeeEEEEcccccccccchHHHHHHHhhhhcc-----ceeeccCcCCcHHHHHHHHHHHHHHHhh----hccccccCCCC
Q 002077 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKR-----STIKIPISRNSLHGYKKLQAVLRAIMLR----RTKGTFIDGQP 580 (972)
Q Consensus 510 ~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~-----~~i~tPi~~~~~~~~~~L~~lL~~~~LR----RtK~~v~~g~p 580 (972)
-.+.+||+||||+.-...+-++-|=..++... .++++|=+ ...+++.+++..-+- ||-.+. |-.
T Consensus 130 ~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs-----~~ekI~eV~~nLgIe~vevrTE~d~-DV~- 202 (542)
T COG1111 130 DDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGS-----DLEKIQEVVENLGIEKVEVRTEEDP-DVR- 202 (542)
T ss_pred HHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCC-----CHHHHHHHHHhCCcceEEEecCCCc-cHH-
Confidence 45778999999998776655555544444433 44566643 244566666654322 233221 111
Q ss_pred cccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchh----HHHHHHHH-HHHHhhcCCC-ccccccccc
Q 002077 581 IINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN----YANILLML-LRLRQACDHP-LLVKEYDFD 654 (972)
Q Consensus 581 i~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~----~~~il~~L-~rLRq~c~hP-~Lv~~~~~~ 654 (972)
.-+-.+.++++.|++.++-.++-+.+..-.+..++.+...|-.... ..+++.+. .++-.+.... .+......-
T Consensus 203 -~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~ 281 (542)
T COG1111 203 -PYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVL 281 (542)
T ss_pred -HhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence 1245677899999999998887777766666666666555543221 22222222 1111111100 000000000
Q ss_pred ccccchHHHhhcCCh---HHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 655 SVGKISGEMAKRLPR---DMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 655 ~~~~~~~e~~~~l~~---e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
...-....+.+-+.. +-+..++.+++. .|.. ... .-...+.
T Consensus 282 a~~~kl~~a~elletqGi~~~~~Yl~~l~e---~~~~-~~s--------------------------------k~a~~l~ 325 (542)
T COG1111 282 AEAIKLAHALELLETQGIRPFYQYLEKLEE---EATK-GGS--------------------------------KAAKSLL 325 (542)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHH---Hhcc-cch--------------------------------HHHHHHh
Confidence 000000001111111 112223333321 1100 000 0000011
Q ss_pred ccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccC
Q 002077 732 ADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSK 811 (972)
Q Consensus 732 ~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (972)
.+..|..+ +..+. .........+|++.+.++|++.++...
T Consensus 326 ~d~~~~~a-l~~~~-----------------~~~~~~v~HPKl~~l~eilke~~~k~~---------------------- 365 (542)
T COG1111 326 ADPYFKRA-LRLLI-----------------RADESGVEHPKLEKLREILKEQLEKNG---------------------- 365 (542)
T ss_pred cChhhHHH-HHHHH-----------------HhccccCCCccHHHHHHHHHHHHhcCC----------------------
Confidence 11111111 00000 001122356899999999999986554
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHHHhCCCcEE-EEeC--------CCCHHHHHHHHHhhhcCCCeeEEEEecCccccc
Q 002077 812 SPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYR-RLDG--------TMSLPARDRAVKDFNTDREITVMLMSLKAGNLG 882 (972)
Q Consensus 812 ~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~-~ldG--------s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~G 882 (972)
+.++|||++|.++++.|...|.+.|+... ++-| .|++++..++|++|+.+ ...||+ +|..|-+|
T Consensus 366 -----~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nVLV-aTSVgEEG 438 (542)
T COG1111 366 -----DSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG-EYNVLV-ATSVGEEG 438 (542)
T ss_pred -----CceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcC-CceEEE-Eccccccc
Confidence 45999999999999999999999988875 5555 48999999999999976 777766 66999999
Q ss_pred cCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHh
Q 002077 883 LNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASA 948 (972)
Q Consensus 883 LNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a 948 (972)
|++...+-||+|||.=+|-+..||.||.+|- +.=+||-|+++||-|+--+....+|.+.+...
T Consensus 439 LDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~ 501 (542)
T COG1111 439 LDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIES 501 (542)
T ss_pred CCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888664 77788889999999998888777776644433
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=1.5e-23 Score=244.83 Aligned_cols=366 Identities=20% Similarity=0.236 Sum_probs=260.3
Q ss_pred ccccCchhHHHHHHHHHH-hhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCC
Q 002077 271 LSVNLLKHQKIALAWMLQ-KETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNG 349 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~-~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 349 (972)
....|||||.+++.-+.. .+. .+.|++.-..|.|||+.++.+|....
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~----~~~gvivlpTGaGKT~va~~~~~~~~---------------------------- 80 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRT----ERRGVIVLPTGAGKTVVAAEAIAELK---------------------------- 80 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhccc----CCceEEEeCCCCCHHHHHHHHHHHhc----------------------------
Confidence 356799999999975553 222 35589999999999999999987422
Q ss_pred CCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChh
Q 002077 350 NAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428 (972)
Q Consensus 350 ~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~ 428 (972)
..+|||||.. |+.||.+.+.+++.. .-.+-.|.|.......
T Consensus 81 -----------------------------------~~~Lvlv~~~~L~~Qw~~~~~~~~~~--~~~~g~~~~~~~~~~~- 122 (442)
T COG1061 81 -----------------------------------RSTLVLVPTKELLDQWAEALKKFLLL--NDEIGIYGGGEKELEP- 122 (442)
T ss_pred -----------------------------------CCEEEEECcHHHHHHHHHHHHHhcCC--ccccceecCceeccCC-
Confidence 2299999965 899999999988753 1245566665543322
Q ss_pred hhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCc
Q 002077 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 508 (972)
Q Consensus 429 ~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L~ 508 (972)
.+|+|.||+++.+... ...+.
T Consensus 123 ----~~i~vat~qtl~~~~~-------------------------------------------------------l~~~~ 143 (442)
T COG1061 123 ----AKVTVATVQTLARRQL-------------------------------------------------------LDEFL 143 (442)
T ss_pred ----CcEEEEEhHHHhhhhh-------------------------------------------------------hhhhc
Confidence 6799999999986310 00122
Q ss_pred cceeeEEEEcccccccccchHHHHHHH-hhhhccceeeccCcCCcHHHHHHHHHHHHHHHhhhccccccC-CCCcccCCC
Q 002077 509 KVGWFRVVLDEAQTIKNHRTQVARACC-SLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPP 586 (972)
Q Consensus 509 ~~~w~rVIlDEAH~IKN~~t~~~ka~~-~L~a~~~~i~tPi~~~~~~~~~~L~~lL~~~~LRRtK~~v~~-g~pi~~LP~ 586 (972)
.-.|+.||+||+|++-.+......... .....-.+++||. +.+......+..++.++.......+.++ | .|.|
T Consensus 144 ~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~LGLTATp~-R~D~~~~~~l~~~~g~~vy~~~~~~li~~g----~Lap 218 (442)
T COG1061 144 GNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGLTATPE-REDGGRIGDLFDLIGPIVYEVSLKELIDEG----YLAP 218 (442)
T ss_pred ccccCEEEEEccccCCcHHHHHHHHhhhcccceeeeccCce-eecCCchhHHHHhcCCeEeecCHHHHHhCC----Cccc
Confidence 336999999999999775433222222 2221336789988 5555566666666766666666555543 3 6788
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhc
Q 002077 587 KTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 666 (972)
Q Consensus 587 k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~ 666 (972)
.....+.+.++.++...|.............. +. .++.. +
T Consensus 219 ~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~---------------------~---- 258 (442)
T COG1061 219 YKYVEIKVTLTEDEEREYAKESARFRELLRAR---GT------------LRAEN---------------------E---- 258 (442)
T ss_pred eEEEEEEeccchHHHHHhhhhhhhhhhhhhhh---hh------------hhHHH---------------------H----
Confidence 88888999999999999876654332221110 00 00000 0
Q ss_pred CChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccC
Q 002077 667 LPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVS 746 (972)
Q Consensus 667 l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~ 746 (972)
...+
T Consensus 259 ---------~~~~------------------------------------------------------------------- 262 (442)
T COG1061 259 ---------ARRI------------------------------------------------------------------- 262 (442)
T ss_pred ---------HHHH-------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecc
Q 002077 747 DDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQW 826 (972)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqf 826 (972)
......|+..+..++.... .+. +++||++.
T Consensus 263 --------------------~~~~~~~~~~~~~~~~~~~-~~~-----------------------------~~lif~~~ 292 (442)
T COG1061 263 --------------------AIASERKIAAVRGLLLKHA-RGD-----------------------------KTLIFASD 292 (442)
T ss_pred --------------------hhccHHHHHHHHHHHHHhc-CCC-----------------------------cEEEEecc
Confidence 0013457777777777655 444 99999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHH
Q 002077 827 TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQA 906 (972)
Q Consensus 827 t~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QA 906 (972)
....+.+...|...|+ ...++|.++..+|.++++.|..+. ..++ ++.+.+.+|+++..|+.+|++.|.-++..+.|+
T Consensus 293 ~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~l-v~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~ 369 (442)
T COG1061 293 VEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKVL-VTVKVLDEGVDIPDADVLIILRPTGSRRLFIQR 369 (442)
T ss_pred HHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCEE-EEeeeccceecCCCCcEEEEeCCCCcHHHHHHH
Confidence 9999999999999988 999999999999999999999864 5554 455999999999999999999999999999999
Q ss_pred hHhhcc-cCCccc--EEEEEEecCCCHHHHHHHHHH
Q 002077 907 VDRAHR-IGQTRP--VTVTRLTIRDTVEDRILKLQD 939 (972)
Q Consensus 907 igRi~R-iGQ~k~--V~V~rli~~dTIEe~Il~lq~ 939 (972)
+||+.| ...+.. +..|-++..++.+..+.....
T Consensus 370 lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 370 LGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred hhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 999999 444444 788888888888887766444
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.92 E-value=2.5e-23 Score=247.27 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=101.8
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+..+..++.|...|+..|+++..++|.|+.++|.++++.|+.+ ...|||.|.+..++|+|+..+++||+++|.-
T Consensus 346 ~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~ 424 (501)
T PHA02558 346 NTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIKNLHHVIFAHPSK 424 (501)
T ss_pred CEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccccccEEEEecCCc
Confidence 899999999999999999999999999999999999999999999864 6778888889999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCccc-EEEEEEecCCCH
Q 002077 899 NPTTEDQAVDRAHRIGQTRP-VTVTRLTIRDTV 930 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~-V~V~rli~~dTI 930 (972)
+.....|++||++|.|..|+ +.||-|+..-.+
T Consensus 425 s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~~ 457 (501)
T PHA02558 425 SKIIVLQSIGRVLRKHGSKSIATVWDIIDDLSV 457 (501)
T ss_pred chhhhhhhhhccccCCCCCceEEEEEeeccccc
Confidence 99999999999999998775 899999865443
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=7.9e-22 Score=217.61 Aligned_cols=360 Identities=19% Similarity=0.238 Sum_probs=238.5
Q ss_pred CCcccCCCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhcccccccc
Q 002077 260 PKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEA 339 (972)
Q Consensus 260 ~~~e~~~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~ 339 (972)
|+...++-| ++.|||||...|.-|.-.. ..|.||+.-.+|.|||+..+..+...
T Consensus 291 pdl~idLKP---st~iRpYQEksL~KMFGNg----RARSGiIVLPCGAGKtLVGvTAa~ti------------------- 344 (776)
T KOG1123|consen 291 PDLDIDLKP---STQIRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKTLVGVTAACTI------------------- 344 (776)
T ss_pred CCCCcCcCc---ccccCchHHHHHHHHhCCC----cccCceEEEecCCCCceeeeeeeeee-------------------
Confidence 455556555 4579999999999999433 24779999999999999887665421
Q ss_pred ccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchh-HHHHHHHHHhhCCCCCCeEEEEE
Q 002077 340 LNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLIY 418 (972)
Q Consensus 340 ~~~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sL-l~QW~~Ei~k~~~~~~~l~vlvy 418 (972)
.+..||+|-.+| +.||..+|..|..-. .-.+..|
T Consensus 345 --------------------------------------------kK~clvLcts~VSVeQWkqQfk~wsti~-d~~i~rF 379 (776)
T KOG1123|consen 345 --------------------------------------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ-DDQICRF 379 (776)
T ss_pred --------------------------------------------cccEEEEecCccCHHHHHHHHHhhcccC-ccceEEe
Confidence 245899999886 899999999997643 4455666
Q ss_pred eCCCCCCChhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCC
Q 002077 419 HGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNS 498 (972)
Q Consensus 419 ~G~~r~~~~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~ 498 (972)
....+.+. -...+||||||+.+..--.+. .+. ++
T Consensus 380 Tsd~Ke~~---~~~~gvvvsTYsMva~t~kRS-----~ea-ek------------------------------------- 413 (776)
T KOG1123|consen 380 TSDAKERF---PSGAGVVVTTYSMVAYTGKRS-----HEA-EK------------------------------------- 413 (776)
T ss_pred eccccccC---CCCCcEEEEeeehhhhccccc-----HHH-HH-------------------------------------
Confidence 55443322 245789999999997532110 000 00
Q ss_pred CcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc---ceeeccCcCCcHHHHHHHHHHHHHHHhhhccccc
Q 002077 499 SIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR---STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF 575 (972)
Q Consensus 499 ~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~---~~i~tPi~~~~~~~~~~L~~lL~~~~LRRtK~~v 575 (972)
....|....|..+||||.|.+- ..+++-+..+-+.+ .+++|-+.. .+....|.-++.|-+.--..-++
T Consensus 414 ----~m~~l~~~EWGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvRE--DdKI~DLNFLIGPKlYEAnWmdL 484 (776)
T KOG1123|consen 414 ----IMDFLRGREWGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVRE--DDKITDLNFLIGPKLYEANWMDL 484 (776)
T ss_pred ----HHHHHhcCeeeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeec--cccccccceeecchhhhccHHHH
Confidence 1123567789999999999993 34444444443333 455555532 22333344444443333222222
Q ss_pred cCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccc
Q 002077 576 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS 655 (972)
Q Consensus 576 ~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~ 655 (972)
..+. .+.....--++|+||++ ||..++.. .+ +-|++ +.
T Consensus 485 ~~kG---hIA~VqCaEVWCpMt~e---Fy~eYL~~-----------~t-------------~kr~l------Ly------ 522 (776)
T KOG1123|consen 485 QKKG---HIAKVQCAEVWCPMTPE---FYREYLRE-----------NT-------------RKRML------LY------ 522 (776)
T ss_pred HhCC---ceeEEeeeeeecCCCHH---HHHHHHhh-----------hh-------------hhhhe------ee------
Confidence 1111 22233445678888875 44332210 00 00000 00
Q ss_pred cccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccc
Q 002077 656 VGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 656 ~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~ 735 (972)
T Consensus 523 -------------------------------------------------------------------------------- 522 (776)
T KOG1123|consen 523 -------------------------------------------------------------------------------- 522 (776)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCC
Q 002077 736 FSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIE 815 (972)
Q Consensus 736 ~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (972)
.....|++++--+|+.+-..|+
T Consensus 523 --------------------------------vMNP~KFraCqfLI~~HE~RgD-------------------------- 544 (776)
T KOG1123|consen 523 --------------------------------VMNPNKFRACQFLIKFHERRGD-------------------------- 544 (776)
T ss_pred --------------------------------ecCcchhHHHHHHHHHHHhcCC--------------------------
Confidence 0134588888888887777766
Q ss_pred CCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEec
Q 002077 816 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 895 (972)
Q Consensus 816 ~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~D 895 (972)
|+||||...-.|...+-.|.+ -.|.|.+++.+|.++++.|+.++.+.-+++| |+|.+.++|..|+.+|-+.
T Consensus 545 ---KiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 545 ---KIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred ---eEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEc
Confidence 999999977655544443332 4688999999999999999999999988889 9999999999999999998
Q ss_pred CCC-CCChHHHHhHhhcccCCc----ccEEEEEEecCCCHHHHH
Q 002077 896 LWW-NPTTEDQAVDRAHRIGQT----RPVTVTRLTIRDTVEDRI 934 (972)
Q Consensus 896 p~W-Np~~e~QAigRi~RiGQ~----k~V~V~rli~~dTIEe~I 934 (972)
... +-..|.||.||+-|--.. -.++.|-|+.+||.|-..
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 876 445788999999997532 258999999999988654
No 28
>PTZ00110 helicase; Provisional
Probab=99.86 E-value=1.1e-19 Score=217.87 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=108.6
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|...|.++|..+...+. |+|||++....++.|...|...|+....++|.
T Consensus 360 ~~k~~~L~~ll~~~~~~~~-----------------------------k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~ 410 (545)
T PTZ00110 360 HEKRGKLKMLLQRIMRDGD-----------------------------KILIFVETKKGADFLTKELRLDGWPALCIHGD 410 (545)
T ss_pred hhHHHHHHHHHHHhcccCC-----------------------------eEEEEecChHHHHHHHHHHHHcCCcEEEEECC
Confidence 3577778888877654444 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
+++.+|.+++++|+++ .+.|| ++|.++++|||+..+++||+||+++++....||+||+.|.|.+-.+ +.|+.++
T Consensus 411 ~~~~eR~~il~~F~~G-~~~IL-VaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 411 KKQEERTWVLNEFKTG-KSPIM-IATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred CcHHHHHHHHHHHhcC-CCcEE-EEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 9999999999999975 66664 5669999999999999999999999999999999999999986544 4455555
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.82 E-value=3.7e-18 Score=200.16 Aligned_cols=102 Identities=23% Similarity=0.332 Sum_probs=93.9
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.++|||+.....++.|...|...|+....++|.|+..+|..+++.|+++ .+.||+.+ .++++|+|+..+++||+||++
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~vLVaT-d~~~~GiDip~v~~VI~~d~p 323 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVNVLVAT-DVAARGIDIDDVSHVINFDMP 323 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCcEEEEc-cccccCccCCCCCEEEEECCC
Confidence 3999999999999999999999999999999999999999999999975 77776655 999999999999999999999
Q ss_pred CCCChHHHHhHhhcccCCcccEEE
Q 002077 898 WNPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~k~V~V 921 (972)
+++....|++||++|.|..-.+.+
T Consensus 324 ~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 324 RSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCHHHHhhcccccccCCCCceEEE
Confidence 999999999999999998765444
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.82 E-value=2.6e-18 Score=202.88 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=95.8
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.....++.+...|...|+....++|.|++.+|+.+++.|.++ ..+||+ +|+++++|||+.++++||+||++.
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLV-aTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLV-ATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEE-EecccccccchhcCCeEEEecCCC
Confidence 899999999999999999999999999999999999999999999975 677766 559999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
++....||+||+.|.|+.-. .+.|+..+
T Consensus 322 ~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred CHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 99999999999999997644 44455554
No 31
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.82 E-value=2e-18 Score=201.77 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=95.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.....++.|...|...|+.+..++|.|+.++|.+++++|+++ ++.||+.+ .++++|||+..+++||+||+++
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g-~~~vLVaT-dv~~rGiDip~v~~VI~~d~P~ 334 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG-DLDILVAT-DVAARGLHIPAVTHVFNYDLPD 334 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-CCcEEEEe-chhhcCCCccccCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999976 77776654 9999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~ 927 (972)
++....|++||++|.|+.-.+ +.|+.+
T Consensus 335 s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 335 DCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred chhheEeccccccCCCCCeeE--EEEeCH
Confidence 999999999999999976543 345544
No 32
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.80 E-value=1.1e-17 Score=198.37 Aligned_cols=133 Identities=18% Similarity=0.277 Sum_probs=107.8
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
|+|||++....++.|...|...|+.+..++|.++..+|.++++.|+++ ++.||+ ++.++++|||+..+++||++|+++
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G-~~~vLv-aT~~l~~GIDi~~v~~VI~~~~P~ 414 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG-KIRVLV-ATDVAGRGIHIDGISHVINFTLPE 414 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-CCcEEE-EccccccCCcccCCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999976 677666 569999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHH
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRY 968 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~ 968 (972)
++....|++||++|.|+.-.+ +.|+.++ |... ..-++..+|..- ...+..+||..
T Consensus 415 s~~~y~Qr~GRaGR~g~~g~~--i~~~~~~--d~~~-------~~~~~~~~~~~~----~~~~~~~~~~~ 469 (475)
T PRK01297 415 DPDDYVHRIGRTGRAGASGVS--ISFAGED--DAFQ-------LPEIEELLGRKI----SCEMPPAELLK 469 (475)
T ss_pred CHHHHHHhhCccCCCCCCceE--EEEecHH--HHHH-------HHHHHHHhCCCC----cccCCcHHHhh
Confidence 999999999999999986543 3344443 3322 122456666431 13456677654
No 33
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.80 E-value=5.9e-18 Score=199.48 Aligned_cols=102 Identities=24% Similarity=0.331 Sum_probs=93.7
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.++|||+......+.|...|...|+....++|.++..+|.++++.|+++ .+.||+ +|+++++|||+.+.++||+||++
T Consensus 246 ~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~iLV-aTdv~~rGiDip~v~~VI~~~~P 323 (456)
T PRK10590 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DIRVLV-ATDIAARGLDIEELPHVVNYELP 323 (456)
T ss_pred CcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EccHHhcCCCcccCCEEEEeCCC
Confidence 3899999999999999999999999999999999999999999999975 777766 55999999999999999999999
Q ss_pred CCCChHHHHhHhhcccCCcccEEE
Q 002077 898 WNPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~k~V~V 921 (972)
.++....|++||+.|.|++-.+.+
T Consensus 324 ~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 324 NVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred CCHHHhhhhccccccCCCCeeEEE
Confidence 999999999999999998765433
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.80 E-value=1.2e-17 Score=199.60 Aligned_cols=106 Identities=19% Similarity=0.301 Sum_probs=94.1
Q ss_pred eEEEEecchHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ-HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~-~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
++|||+.....++.|...|.. .|+.+..++|.++..+|..+++.|..+ ++.||+ +|.++++|||+..+++||+||++
T Consensus 369 ~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~~~ILV-aTdvl~rGiDip~v~~VI~~d~P 446 (518)
T PLN00206 369 PAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-EVPVIV-ATGVLGRGVDLLRVRQVIIFDMP 446 (518)
T ss_pred CEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-CCCEEE-EecHhhccCCcccCCEEEEeCCC
Confidence 899999999999999999975 599999999999999999999999976 777765 56999999999999999999999
Q ss_pred CCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 898 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
.++....|++||++|.|..-. ++.|+..+
T Consensus 447 ~s~~~yihRiGRaGR~g~~G~--ai~f~~~~ 475 (518)
T PLN00206 447 NTIKEYIHQIGRASRMGEKGT--AIVFVNEE 475 (518)
T ss_pred CCHHHHHHhccccccCCCCeE--EEEEEchh
Confidence 999999999999999997543 44455544
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.80 E-value=3e-18 Score=206.32 Aligned_cols=99 Identities=17% Similarity=0.340 Sum_probs=92.5
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.....++.|...|...|+.+..++|.|+..+|.++++.|+++ ++.||+. +.++++|||+...++||+||++|
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G-~~~VLVa-Tdv~arGIDip~V~~VInyd~P~ 336 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG-QLEILVA-TDVAARGLHIDGVKYVYNYDLPF 336 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEE-ehhhhcCCCccCCCEEEEcCCCC
Confidence 999999999999999999999999999999999999999999999975 6777665 59999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccE
Q 002077 899 NPTTEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V 919 (972)
++....|++||+.|.|..-.+
T Consensus 337 s~~~yvqRiGRaGR~G~~G~a 357 (572)
T PRK04537 337 DAEDYVHRIGRTARLGEEGDA 357 (572)
T ss_pred CHHHHhhhhcccccCCCCceE
Confidence 999999999999999986543
No 36
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.79 E-value=7.2e-17 Score=190.87 Aligned_cols=146 Identities=23% Similarity=0.256 Sum_probs=109.9
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHh-C--CCcEEE
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQ-H--CIQYRR 846 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~-~--gi~~~~ 846 (972)
..+|++.+.+.|.+..+.+. +.++|||+.+...++.|...|.+ + |++...
T Consensus 393 ~npkle~l~~~l~e~f~~~~---------------------------dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~ 445 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNP---------------------------DSRTIIFVETRESALALKKWLLQLHELGIKAEI 445 (746)
T ss_pred cChhHHHHHHHHHHHhhcCC---------------------------CccEEEEEehHHHHHHHHHHHHhhhhcccccce
Confidence 57899999999999887544 55999999999999999999883 2 555554
Q ss_pred EeC--------CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCccc
Q 002077 847 LDG--------TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 847 ldG--------s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 918 (972)
+-| +|++++..++|+.|+++ +..||+ +|..|-|||+...+|-||-||..-||-...||.|| +|- +.
T Consensus 446 fiGq~~s~~~~gmtqk~Q~evl~~Fr~G-~~NvLV-ATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa---~n 519 (746)
T KOG0354|consen 446 FIGQGKSTQSTGMTQKEQKEVLDKFRDG-EINVLV-ATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA---RN 519 (746)
T ss_pred eeeccccccccccCHHHHHHHHHHHhCC-CccEEE-EecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc---cC
Confidence 544 58899999999999975 777776 55999999999999999999999999999999999 554 44
Q ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHHHhh
Q 002077 919 VTVTRLTIRDTVEDRILKLQDDKRKMVASAF 949 (972)
Q Consensus 919 V~V~rli~~dTIEe~Il~lq~~K~~li~~a~ 949 (972)
=+++-+.. ++-+-.--..+..|+.+...++
T Consensus 520 s~~vll~t-~~~~~~~E~~~~~~e~lm~~~i 549 (746)
T KOG0354|consen 520 SKCVLLTT-GSEVIEFERNNLAKEKLMNQTI 549 (746)
T ss_pred CeEEEEEc-chhHHHHHHHHHhHHHHHHHHH
Confidence 44444444 4322222233444555444443
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.79 E-value=4.9e-17 Score=197.10 Aligned_cols=100 Identities=16% Similarity=0.282 Sum_probs=92.2
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.-....+.|...|...|+....++|.|++.+|.++++.|+.+ .+.||+ +|++++.|||+..+++||+||++.
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILV-ATdv~arGIDip~V~~VI~~d~P~ 324 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILI-ATDVAARGLDVERISLVVNYDIPM 324 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEE-EcchHhcCCCcccCCEEEEeCCCC
Confidence 899999999999999999999999999999999999999999999975 666554 669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEE
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVT 920 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~ 920 (972)
++....|++||+.|.|..-.+.
T Consensus 325 ~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 325 DSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred CHHHHHHHhccccCCCCcceEE
Confidence 9999999999999999765433
No 38
>PTZ00424 helicase 45; Provisional
Probab=99.78 E-value=4.5e-17 Score=188.94 Aligned_cols=106 Identities=19% Similarity=0.332 Sum_probs=95.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.....++.+...|...++.+..++|.++.++|..+++.|+++ .++||+ ++.++++|+|+..+++||++|++.
T Consensus 269 ~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLv-aT~~l~~GiDip~v~~VI~~~~p~ 346 (401)
T PTZ00424 269 QAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLI-TTDLLARGIDVQQVSLVINYDLPA 346 (401)
T ss_pred eEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-EcccccCCcCcccCCEEEEECCCC
Confidence 899999999999999999999999999999999999999999999975 677665 559999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
++....|++||++|.|..- .++.|+.++
T Consensus 347 s~~~y~qr~GRagR~g~~G--~~i~l~~~~ 374 (401)
T PTZ00424 347 SPENYIHRIGRSGRFGRKG--VAINFVTPD 374 (401)
T ss_pred CHHHEeecccccccCCCCc--eEEEEEcHH
Confidence 9999999999999998643 445566554
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=2.3e-17 Score=195.10 Aligned_cols=102 Identities=24% Similarity=0.242 Sum_probs=94.0
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
+.|||+......+.+...|...|+.+..++|.|+.++|.++++.|..+ .+.||+. +.+.|.|+|+.+.++||+++++.
T Consensus 228 ~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~vLVa-T~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 228 SGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQVVVA-TVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred ceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCcEEEE-echhhccCCcccceEEEEeCCCC
Confidence 679999999999999999999999999999999999999999999965 7777765 58999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEE
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
++....|++||++|.|+.....++
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999988764443
No 40
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=2.7e-17 Score=189.19 Aligned_cols=121 Identities=21% Similarity=0.268 Sum_probs=106.3
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|...|.++|..+.. +. +.|+||||......+-|+..|...+++...|+|
T Consensus 322 ~~~K~~~l~~lL~~~~~-~~---------------------------~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHG 373 (519)
T KOG0331|consen 322 ETAKLRKLGKLLEDISS-DS---------------------------EGKVIIFCETKRTCDELARNLRRKGWPAVAIHG 373 (519)
T ss_pred HHHHHHHHHHHHHHHhc-cC---------------------------CCcEEEEecchhhHHHHHHHHHhcCcceeeecc
Confidence 34688888888888762 21 349999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVT 920 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~ 920 (972)
..++.+|..+++.|.++ +..||+ .|++++.||++...++||+||+|=|.....+|+||..|-|++-...
T Consensus 374 d~sQ~eR~~~L~~FreG-~~~vLV-ATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 374 DKSQSERDWVLKGFREG-KSPVLV-ATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred cccHHHHHHHHHhcccC-CcceEE-EcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 99999999999999986 666666 5599999999999999999999999999999999999988776543
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.76 E-value=6.4e-17 Score=196.68 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=92.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
+.|||+......+.+...|...|+++..++|.|+.++|..+++.|..+ .+.||+ +|.+.|.|+|+.++++||++++++
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vlV-aT~a~~~GID~p~v~~VI~~~~p~ 303 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVMV-ATNAFGMGIDKPNVRFVIHYDMPG 303 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCcCCCCCEEEEcCCCC
Confidence 899999999999999999999999999999999999999999999976 666655 559999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEE
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVT 920 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~ 920 (972)
|+....|++||++|.|+.....
T Consensus 304 s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 304 NLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CHHHHhhhhccccCCCCCceEE
Confidence 9999999999999999766543
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.75 E-value=7.1e-17 Score=196.18 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=91.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+......+.+...|...|+.+..++|.|+.++|.++++.|..+ .+.||+ +|.+.|.|+|+.+.++||+||++.
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VLV-aT~a~~~GIDip~V~~VI~~d~P~ 315 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIVV-ATVAFGMGINKPNVRFVVHFDIPR 315 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEEE-EechhhccCCCCCcCEEEEeCCCC
Confidence 899999999999999999999999999999999999999999999976 677666 558999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCccc
Q 002077 899 NPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~ 918 (972)
+.....|++||++|.|....
T Consensus 316 s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 316 NIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred CHHHHHHHhhhccCCCCCce
Confidence 99999999999999997655
No 43
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.75 E-value=2e-16 Score=193.14 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=79.5
Q ss_pred eEEEEecch--------HHHHHHHHHHHh--CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC
Q 002077 819 KSIVFSQWT--------RMLDLVENSLNQ--HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA 888 (972)
Q Consensus 819 KvIVFSqft--------~~ld~L~~~L~~--~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A 888 (972)
+++||+... ..+..+...|.+ .++.+..++|.|+.++|.+++++|.++ +..||+ +|.+.++|+|+.++
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GvDiP~v 527 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG-EVDILV-ATTVIEVGVDVPNA 527 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECceeecCcccCCC
Confidence 777777543 223444555554 378899999999999999999999975 666665 56899999999999
Q ss_pred CEEEEecCCC-CCChHHHHhHhhcccCCcccEE
Q 002077 889 SHVILLDLWW-NPTTEDQAVDRAHRIGQTRPVT 920 (972)
Q Consensus 889 ~~VI~~Dp~W-Np~~e~QAigRi~RiGQ~k~V~ 920 (972)
++||+++++. +.+...|++||++|-|..-.+.
T Consensus 528 ~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 528 TVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred cEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 9999999874 6678899999999998765543
No 44
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.72 E-value=3.8e-16 Score=198.12 Aligned_cols=105 Identities=14% Similarity=0.294 Sum_probs=84.6
Q ss_pred ceEEEEecchHHHHHHHHHHHhC------CC---cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQH------CI---QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA 888 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~------gi---~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A 888 (972)
.|.||||.....++.+...|.+. ++ .+..++|+++ ++.+++++|.++. ...+|++.+..++|++....
T Consensus 699 ~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 699 GKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-LPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC-CCeEEEEecccccCCCcccc
Confidence 49999999999888888777653 22 3467999984 5788999999753 33566688999999999999
Q ss_pred CEEEEecCCCCCChHHHHhHhhcccCC---cccEEEEEEe
Q 002077 889 SHVILLDLWWNPTTEDQAVDRAHRIGQ---TRPVTVTRLT 925 (972)
Q Consensus 889 ~~VI~~Dp~WNp~~e~QAigRi~RiGQ---~k~V~V~rli 925 (972)
++||++.|.-++....|++||+-|.-- +....|+-++
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 999999999999999999999999854 3335555544
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.71 E-value=1.6e-15 Score=189.44 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=89.6
Q ss_pred eEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
+++||+.....++.+...|++. ++++..++|.|+..+|.+++++|.++ +..||+ +|.+.++|+|+..+++||++++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~ILV-aT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVLV-CTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEE-ECChhhcccccccCCEEEEecC
Confidence 8999999999999999999985 88999999999999999999999976 666666 5599999999999999999998
Q ss_pred C-CCCChHHHHhHhhcccCCcccEEEEEEecC
Q 002077 897 W-WNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927 (972)
Q Consensus 897 ~-WNp~~e~QAigRi~RiGQ~k~V~V~rli~~ 927 (972)
+ +..+...|++||++|-|+.- ++|-|+..
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 5 45567889999999998654 34444433
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.71 E-value=3e-15 Score=184.02 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=79.7
Q ss_pred eEEEEecchH--------HHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC
Q 002077 819 KSIVFSQWTR--------MLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA 888 (972)
Q Consensus 819 KvIVFSqft~--------~ld~L~~~L~~~--gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A 888 (972)
+++|||.... .+..+...|... ++++..++|.|+..+|.+++++|.++ +..||+ +|.+.++|+|+.++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GiDip~v 550 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG-EIDILV-ATTVIEVGVDVPNA 550 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECcceeeCcccCCC
Confidence 8888886432 234455556554 57899999999999999999999975 666665 66999999999999
Q ss_pred CEEEEecCCC-CCChHHHHhHhhcccCCcccE
Q 002077 889 SHVILLDLWW-NPTTEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 889 ~~VI~~Dp~W-Np~~e~QAigRi~RiGQ~k~V 919 (972)
+.||+++++. ..+...|++||++|-|..-.+
T Consensus 551 ~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 551 TVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred cEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 9999999974 567888999999999876443
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.70 E-value=2.9e-15 Score=190.83 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=88.3
Q ss_pred eEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
+++||+.-...++.+...|.+. ++++..++|.|+..+|.+++.+|.++ ++.||+ +|.+.+.|||+..+++||+.++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~VLV-aTdIierGIDIP~v~~VIi~~a 888 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLV-CTTIIETGIDIPTANTIIIERA 888 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCEEE-ECchhhcccccccCCEEEEecC
Confidence 8999999999999999999887 78999999999999999999999976 777766 5599999999999999998776
Q ss_pred C-CCCChHHHHhHhhcccCCcccEE
Q 002077 897 W-WNPTTEDQAVDRAHRIGQTRPVT 920 (972)
Q Consensus 897 ~-WNp~~e~QAigRi~RiGQ~k~V~ 920 (972)
. |..+...|++||++|.|++--++
T Consensus 889 d~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 889 DHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred CCCCHHHHHHHhhccCCCCCceEEE
Confidence 4 67778999999999998876444
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.69 E-value=1.2e-15 Score=188.24 Aligned_cols=102 Identities=22% Similarity=0.187 Sum_probs=94.2
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
..||||......+.|...|...|+....++|.|+..+|..+++.|..+ ++.||+. |.|.|.|||+.+.++||+||++-
T Consensus 682 sgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~VLVA-TdAFGMGIDkPDVR~VIHydlPk 759 (1195)
T PLN03137 682 CGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EINIICA-TVAFGMGINKPDVRFVIHHSLPK 759 (1195)
T ss_pred CceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCcEEEE-echhhcCCCccCCcEEEEcCCCC
Confidence 789999999999999999999999999999999999999999999976 7777665 59999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEE
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
+.....|++||++|.|+.-.+..+
T Consensus 760 SiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 760 SIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CHHHHHhhhcccCCCCCCceEEEE
Confidence 999999999999999998764443
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.64 E-value=1.1e-14 Score=179.85 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=95.6
Q ss_pred eEEEEecchHHHHHHHHHHHhC--------CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASH 890 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--------gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~ 890 (972)
++|||++.....+.|...|.+. +.++..++|++++++|.++.++|+++ ++++| ++|.+++.|||+...++
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G-~i~vL-VaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG-ELLGV-ATTNALELGVDISGLDA 350 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC-CceEE-EECchHhccCCcccccE
Confidence 9999999999999999887753 56778899999999999999999975 67665 56799999999999999
Q ss_pred EEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHH
Q 002077 891 VILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935 (972)
Q Consensus 891 VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il 935 (972)
||++|.|-+.....|++||++|.|+.-- ++-++..+..|..++
T Consensus 351 VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 351 VVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLV 393 (742)
T ss_pred EEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHH
Confidence 9999999999999999999999997654 333444455665543
No 50
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.63 E-value=1.7e-15 Score=146.47 Aligned_cols=120 Identities=28% Similarity=0.431 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCC
Q 002077 772 SKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTM 851 (972)
Q Consensus 772 sKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~ 851 (972)
.|+..+.+.+......+. ++|||+.....++.+...|.+.++.+..++|++
T Consensus 12 ~k~~~i~~~i~~~~~~~~-----------------------------~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (131)
T cd00079 12 EKLEALLELLKEHLKKGG-----------------------------KVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62 (131)
T ss_pred HHHHHHHHHHHhcccCCC-----------------------------cEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 699999988887654433 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 852 SLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 852 s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
+..+|..+++.|+.+ . ..+|+++.++++|+|++.+++||+++++|++....|++||++|.||+..|.++
T Consensus 63 ~~~~~~~~~~~f~~~-~-~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 63 SQEEREEVLKDFREG-E-IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CHHHHHHHHHHHHcC-C-CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999976 3 44555779999999999999999999999999999999999999998877764
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.62 E-value=3.7e-14 Score=176.55 Aligned_cols=105 Identities=19% Similarity=0.086 Sum_probs=81.2
Q ss_pred eEEEEecchHHHHHHHHHHHhC------------------------------------CCcEEEEeCCCCHHHHHHHHHh
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH------------------------------------CIQYRRLDGTMSLPARDRAVKD 862 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~------------------------------------gi~~~~ldGs~s~~~R~~~I~~ 862 (972)
++|||+......+.+...|... ...+..++|.++..+|..+.+.
T Consensus 245 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~ 324 (737)
T PRK02362 245 QCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDA 324 (737)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHH
Confidence 8888888877666555554322 1246788999999999999999
Q ss_pred hhcCCCeeEEEEecCccccccCCCCCCEEEE----ec-----CCCCCChHHHHhHhhcccCCcccEEEEEEe
Q 002077 863 FNTDREITVMLMSLKAGNLGLNMVAASHVIL----LD-----LWWNPTTEDQAVDRAHRIGQTRPVTVTRLT 925 (972)
Q Consensus 863 F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~----~D-----p~WNp~~e~QAigRi~RiGQ~k~V~V~rli 925 (972)
|+++ .++||+. |.+.+.|+|+.+..+||. || .+.++....|++||++|.|....=.++-++
T Consensus 325 Fr~G-~i~VLva-T~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 325 FRDR-LIKVISS-TPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred HHcC-CCeEEEe-chhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEe
Confidence 9975 7777765 599999999999888886 77 456777899999999999987654444444
No 52
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.4e-13 Score=164.04 Aligned_cols=105 Identities=26% Similarity=0.440 Sum_probs=95.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.-...++.|...|...|+.+..|+|++++.+|.++++.|+++ ...||+.+ ++++.||++...+|||+||++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~vLVaT-DvaaRGiDi~~v~~VinyD~p~ 352 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRVLVAT-DVAARGLDIPDVSHVINYDLPL 352 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEEEe-chhhccCCccccceeEEccCCC
Confidence 799999999999999999999999999999999999999999999954 88888866 9999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~ 927 (972)
++....+||||..|.|.+- .-+.|+..
T Consensus 353 ~~e~yvHRiGRTgRaG~~G--~ai~fv~~ 379 (513)
T COG0513 353 DPEDYVHRIGRTGRAGRKG--VAISFVTE 379 (513)
T ss_pred CHHHheeccCccccCCCCC--eEEEEeCc
Confidence 9999999999999999443 33445554
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.59 E-value=1.1e-13 Score=174.30 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=89.1
Q ss_pred eEEEEecchHHHHHHHHHHHhC------CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~------gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI 892 (972)
++|||+.-....+.+...|.+. +..+..++|+++.++|..+.+.|+++ .++|++ +|.+++.|+|+...++||
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-~i~vLV-aTs~Le~GIDip~Vd~VI 363 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-ELKVVV-SSTSLELGIDIGYIDLVV 363 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-CCeEEE-ECChHHhcCCCCCCcEEE
Confidence 8999999999999999998873 46788999999999999999999976 666666 559999999999999999
Q ss_pred EecCCCCCChHHHHhHhhccc-CCcccEEEEE
Q 002077 893 LLDLWWNPTTEDQAVDRAHRI-GQTRPVTVTR 923 (972)
Q Consensus 893 ~~Dp~WNp~~e~QAigRi~Ri-GQ~k~V~V~r 923 (972)
+++++.+.+...|++||++|- |+...-.++-
T Consensus 364 ~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 364 LLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred EeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999999986 4544444443
No 54
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.59 E-value=1.8e-13 Score=165.33 Aligned_cols=117 Identities=11% Similarity=0.082 Sum_probs=98.5
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.++++.+.+....+. .+||||......+.|...|.+.||++..++|
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~-----------------------------pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQ-----------------------------PVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCC-----------------------------CEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 35699999999988766666 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC---------CCCEEEEecCCCCCChHHHHhHhhcccCCcccEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---------AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVT 920 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt---------~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~ 920 (972)
.+...+|..+...|+.+ .| +++|..+|.|+++. ..++|+.++++-+. .+.|++||++|.|..-...
T Consensus 457 ~~~~~E~~ii~~ag~~g---~V-lIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG---AV-TVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred CChHHHHHHHHHcCCCC---eE-EEEccccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEE
Confidence 99887776666655543 44 56779999999999 77999999999554 5599999999999876633
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.55 E-value=3.5e-13 Score=166.54 Aligned_cols=72 Identities=22% Similarity=0.181 Sum_probs=59.0
Q ss_pred EEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC---------CCCChHHHHhHhhcccC
Q 002077 844 YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW---------WNPTTEDQAVDRAHRIG 914 (972)
Q Consensus 844 ~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~---------WNp~~e~QAigRi~RiG 914 (972)
+..++|.++..+|..+.+.|+++ .++||+ +|.+.+.|+|+.+ .+||++|.. +++....|++||++|.|
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~g-~i~VLv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRNR-YIKVIV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHcC-CCeEEE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 46689999999999999999975 777766 5599999999986 678877643 45556789999999999
Q ss_pred Cccc
Q 002077 915 QTRP 918 (972)
Q Consensus 915 Q~k~ 918 (972)
....
T Consensus 365 ~d~~ 368 (674)
T PRK01172 365 YDQY 368 (674)
T ss_pred CCCc
Confidence 7665
No 56
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.55 E-value=1.6e-13 Score=149.44 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=98.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
-+||||.--.+.+.+.-.|+..|+....|+|.|++..|..+++.|+++ ...||+ +++.++.||+.+.+++||+||.|-
T Consensus 302 s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv-~TDVaSRGLDip~Vd~VVNyDiP~ 379 (476)
T KOG0330|consen 302 SVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILV-CTDVASRGLDIPHVDVVVNYDIPT 379 (476)
T ss_pred cEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEE-ecchhcccCCCCCceEEEecCCCC
Confidence 799999999999999999999999999999999999999999999975 555555 569999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCCCHH
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~dTIE 931 (972)
+-....+|.||+.|.| +.-.+..|++.-.||
T Consensus 380 ~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 380 HSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred cHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 9999999999999999 666677788775554
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.55 E-value=4.4e-13 Score=153.30 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=85.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHH----HHhhhcCCCeeEEEEecCccccccCCCCCCEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCI--QYRRLDGTMSLPARDRA----VKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi--~~~~ldGs~s~~~R~~~----I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI 892 (972)
++|||+.....++.+...|++.+. .+..++|.++..+|.+. ++.|.++ ...| |++|.+.++|+|+ .++.||
T Consensus 224 ~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~i-lvaT~~~~~GiDi-~~~~vi 300 (358)
T TIGR01587 224 KIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFV-IVATQVIEASLDI-SADVMI 300 (358)
T ss_pred eEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeE-EEECcchhceecc-CCCEEE
Confidence 999999999999999999998876 48999999999999764 8889864 5555 5577999999999 588888
Q ss_pred EecCCCCCChHHHHhHhhcccCCcc----cEEEEEEecCC
Q 002077 893 LLDLWWNPTTEDQAVDRAHRIGQTR----PVTVTRLTIRD 928 (972)
Q Consensus 893 ~~Dp~WNp~~e~QAigRi~RiGQ~k----~V~V~rli~~d 928 (972)
.++.+ +....|++||++|.|... .|+|+.....+
T Consensus 301 ~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 301 TELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 87665 778899999999999864 35555544433
No 58
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=7.4e-13 Score=161.48 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|+.++++.+......+. ++||||......+.|...|.+.||++..|+|.
T Consensus 411 ~~K~~al~~~i~~~~~~~~-----------------------------pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~ 461 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGR-----------------------------PVLIGTGSIEQSETFSKLLDEAGIPHNLLNAK 461 (790)
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 4699999999987655555 89999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCC---CCCC-----EEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNM---VAAS-----HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNL---t~A~-----~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
+...+|..+...|+.+ .| +++|..+|.|+++ .... |||++|++=|+..+.|++||++|.|+.-....
T Consensus 462 ~~~~e~~~i~~ag~~g---~V-lIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~- 536 (790)
T PRK09200 462 NAAKEAQIIAEAGQKG---AV-TVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF- 536 (790)
T ss_pred ccHHHHHHHHHcCCCC---eE-EEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE-
Confidence 9887777666666533 44 5677999999999 4676 99999999999999999999999998765322
Q ss_pred EEecCCCHHHHHHHH
Q 002077 923 RLTIRDTVEDRILKL 937 (972)
Q Consensus 923 rli~~dTIEe~Il~l 937 (972)
|+ |.|+.++.+
T Consensus 537 -~i---s~eD~l~~~ 547 (790)
T PRK09200 537 -FI---SLEDDLLKR 547 (790)
T ss_pred -EE---cchHHHHHh
Confidence 22 445655543
No 59
>PRK00254 ski2-like helicase; Provisional
Probab=99.52 E-value=1.6e-12 Score=161.55 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=63.5
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE-------ecCCCCC-ChHHHHhHhhcccC
Q 002077 843 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL-------LDLWWNP-TTEDQAVDRAHRIG 914 (972)
Q Consensus 843 ~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~-------~Dp~WNp-~~e~QAigRi~RiG 914 (972)
.+..++|.++.++|..+.+.|+++ .++||+ +|.+.+.|+|+.+.++||. ++...-| ....|++||++|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G-~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREG-LIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCC-CCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 467899999999999999999976 777766 5599999999998877774 2222223 35689999999998
Q ss_pred CcccEEEEEEecCC
Q 002077 915 QTRPVTVTRLTIRD 928 (972)
Q Consensus 915 Q~k~V~V~rli~~d 928 (972)
....-.++-++..+
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 76654555455443
No 60
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=2.3e-13 Score=154.54 Aligned_cols=130 Identities=20% Similarity=0.232 Sum_probs=109.7
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|...|+++|......+. ......++++||+.-..+++.|+..|...++++..|+|
T Consensus 312 ~~~kr~~Lldll~~~~~~~~----------------------~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg 369 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPS----------------------DGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHG 369 (482)
T ss_pred chhhHHHHHHHhhcccCCcc----------------------cCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecc
Confidence 45688899998876543211 00111349999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTR 923 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~r 923 (972)
.-++.+|.++++.|... .+.||+.+ ..++.|||.....|||+||.+=+-.....||||.+|-|+.-..+.+.
T Consensus 370 ~~tq~er~~al~~Fr~g-~~pvlVaT-~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 370 DRTQIEREQALNDFRNG-KAPVLVAT-NVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred hhhhhHHHHHHHHhhcC-CcceEEEe-hhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 99999999999999976 66676655 99999999999999999999999999999999999999987755543
No 61
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=5.9e-12 Score=150.68 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|+.++++.+......+. .+|||+......+.|...|.+.||++..|+|.
T Consensus 456 ~~K~~aL~~~i~~~~~~~~-----------------------------pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~ 506 (656)
T PRK12898 456 AAKWAAVAARVRELHAQGR-----------------------------PVLVGTRSVAASERLSALLREAGLPHQVLNAK 506 (656)
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCC
Confidence 4699999999987655554 79999999999999999999999999999998
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC---CCC-----EEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---AAS-----HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt---~A~-----~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
+ .+|++.+..|...+ .. ++++|..+|.|+++. ... |||++|.+=|...+.|++||+.|.|..-.+..
T Consensus 507 ~--~~rE~~ii~~ag~~-g~-VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~- 581 (656)
T PRK12898 507 Q--DAEEAAIVARAGQR-GR-ITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEA- 581 (656)
T ss_pred c--HHHHHHHHHHcCCC-Cc-EEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEE-
Confidence 6 46667777776432 23 456779999999988 443 99999999999999999999999997654322
Q ss_pred EEecCCCHHHHHHHHH
Q 002077 923 RLTIRDTVEDRILKLQ 938 (972)
Q Consensus 923 rli~~dTIEe~Il~lq 938 (972)
|+ |.|+.++..-
T Consensus 582 -~i---s~eD~l~~~~ 593 (656)
T PRK12898 582 -IL---SLEDDLLQSF 593 (656)
T ss_pred -Ee---chhHHHHHhh
Confidence 22 3455555443
No 62
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.48 E-value=5.7e-12 Score=154.66 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=78.1
Q ss_pred eEEEEecchHHHHHHHHHHHhC-----CCcEEEEeCCCCHH---------------------HHHHHHHhhhcCCCeeEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH-----CIQYRRLDGTMSLP---------------------ARDRAVKDFNTDREITVM 872 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~-----gi~~~~ldGs~s~~---------------------~R~~~I~~F~~~~~~~Vl 872 (972)
|.+||+-....+..+...|.+. +...+.++|+...+ ...+++++|.++..++|+
T Consensus 516 kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~il 595 (667)
T TIGR00348 516 KAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLL 595 (667)
T ss_pred ceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEE
Confidence 8888888888777777776543 34456666665433 234789999876567777
Q ss_pred EEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhccc-CCccc-EEEEEEec
Q 002077 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI-GQTRP-VTVTRLTI 926 (972)
Q Consensus 873 LiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~Ri-GQ~k~-V~V~rli~ 926 (972)
++. +-..+|.+.+.++++++.-|.=... ..|+|||+.|+ +-.|+ ..|+-|+-
T Consensus 596 IVv-dmllTGFDaP~l~tLyldKplk~h~-LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 596 IVV-DMLLTGFDAPILNTLYLDKPLKYHG-LLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEE-cccccccCCCccceEEEeccccccH-HHHHHHHhccccCCCCCCEEEEECcC
Confidence 655 8999999999999999998876654 68999999995 54443 67776654
No 63
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.48 E-value=4.2e-14 Score=125.06 Aligned_cols=78 Identities=35% Similarity=0.525 Sum_probs=71.6
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccC
Q 002077 835 NSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 914 (972)
Q Consensus 835 ~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiG 914 (972)
+.|+..|+.+..++|.++.++|+++++.|+.+ ...||+ ++.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 36889999999999999999999999999986 445555 5599999999999999999999999999999999999998
No 64
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.46 E-value=9.4e-12 Score=149.75 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|+.++++.+.+..+.+. .+||||......+.|...|.+.||++..|+|.
T Consensus 388 ~~k~~ai~~~i~~~~~~gr-----------------------------pvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQ-----------------------------PVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 3589999999988877776 89999999999999999999999999999998
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCC-------CCEEEEecCCCCCChHHHHhHhhcccCCcccEEE
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA-------ASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~-------A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 921 (972)
..+|++.|..|... ...|+ ++|..+|.|+++.. ..|||.++++-|+..+.|++||++|.|..-....
T Consensus 439 --q~~rEa~ii~~ag~-~g~Vt-IATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 439 --NHEREAEIIAQAGR-KGAVT-IATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred --hHHHHHHHHHhcCC-CceEE-EEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 68999999999854 44454 46699999999988 6799999999999999999999999999866433
No 65
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.46 E-value=1.3e-12 Score=145.94 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=88.2
Q ss_pred eEEEEecchHHHHHHHHHHH----hCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEe
Q 002077 819 KSIVFSQWTRMLDLVENSLN----QHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 894 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~----~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~ 894 (972)
++|+|+...+....+...|+ ...+.+-.++|..+.+.|.+.++.|+.+ +++||++| ++++.|+++-..+.||.|
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcS-D~laRGiDv~~v~~VINY 508 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICS-DALARGIDVNDVDNVINY 508 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEeh-hhhhcCCcccccceEeec
Confidence 99999999888777777766 3477777899999999999999999976 89999988 999999999999999999
Q ss_pred cCCCCCChHHHHhHhhcccCCccc
Q 002077 895 DLWWNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 895 Dp~WNp~~e~QAigRi~RiGQ~k~ 918 (972)
|||-.-....+|+||..|-||.--
T Consensus 509 d~P~~~ktyVHR~GRTARAgq~G~ 532 (620)
T KOG0350|consen 509 DPPASDKTYVHRAGRTARAGQDGY 532 (620)
T ss_pred CCCchhhHHHHhhcccccccCCce
Confidence 999999999999999999998653
No 66
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.45 E-value=4.5e-12 Score=142.44 Aligned_cols=117 Identities=19% Similarity=0.284 Sum_probs=104.9
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.++|..+|+++|.+... ..+|||.+....+|.|++.|.+.|+++++|+|
T Consensus 501 ed~k~kkL~eil~~~~~-------------------------------ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg 549 (673)
T KOG0333|consen 501 EDEKRKKLIEILESNFD-------------------------------PPIIIFVNTKKGADALAKILEKAGYKVTTLHG 549 (673)
T ss_pred chHHHHHHHHHHHhCCC-------------------------------CCEEEEEechhhHHHHHHHHhhccceEEEeeC
Confidence 46789999999987522 28999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 919 (972)
+.++++|+.+++.|.++ ...||+ .|+++|.|++.++.++||.||..-+-....+||||.+|-|+.-.+
T Consensus 550 ~k~qeQRe~aL~~fr~~-t~dIlV-aTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta 617 (673)
T KOG0333|consen 550 GKSQEQRENALADFREG-TGDILV-ATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA 617 (673)
T ss_pred CccHHHHHHHHHHHHhc-CCCEEE-EecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee
Confidence 99999999999999985 445555 559999999999999999999999999999999999999987653
No 67
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.44 E-value=2.3e-11 Score=148.79 Aligned_cols=101 Identities=25% Similarity=0.348 Sum_probs=84.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH-----HHHHhhhc----CC-----CeeEEEEecCccccccC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARD-----RAVKDFNT----DR-----EITVMLMSLKAGNLGLN 884 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~-----~~I~~F~~----~~-----~~~VlLiSlkagg~GLN 884 (972)
++|||++....++.|...|.+.++ ..|+|.|++.+|. +++++|.. +. .-..+|++|++++.|||
T Consensus 274 ~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLD 351 (844)
T TIGR02621 274 AILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVN 351 (844)
T ss_pred cEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhccc
Confidence 899999999999999999999887 8999999999999 78999986 21 11356788899999999
Q ss_pred CCCCCEEEEecCCCCCChHHHHhHhhcccCCccc--EEEEEE
Q 002077 885 MVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP--VTVTRL 924 (972)
Q Consensus 885 Lt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~--V~V~rl 924 (972)
+.. ++||+.+.++ ....||+||++|.|.... ++|+.+
T Consensus 352 Id~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 352 ISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred CCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 976 9999877664 688999999999999644 455544
No 68
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5.5e-12 Score=132.11 Aligned_cols=106 Identities=20% Similarity=0.327 Sum_probs=95.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
.+||||.-...+|+|.+.|+++++.+..++|.|++++|.+++.+|+.+ ..+||| ++++-+.|++.+..+.||+||+|-
T Consensus 268 QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvLi-tTDVwaRGiDv~qVslviNYDLP~ 345 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVLI-TTDVWARGIDVQQVSLVINYDLPN 345 (400)
T ss_pred eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEEE-EechhhccCCcceeEEEEecCCCc
Confidence 899999999999999999999999999999999999999999999986 555555 779999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
|+....+||||.+|+|.+-- +..|+..+
T Consensus 346 nre~YIHRIGRSGRFGRkGv--ainFVk~~ 373 (400)
T KOG0328|consen 346 NRELYIHRIGRSGRFGRKGV--AINFVKSD 373 (400)
T ss_pred cHHHHhhhhccccccCCcce--EEEEecHH
Confidence 99999999999999997653 34566555
No 69
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.41 E-value=2.3e-11 Score=149.53 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=75.0
Q ss_pred HHHHHHHHHhC--CCcEEEEeCCCC--HHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC---CCC--
Q 002077 830 LDLVENSLNQH--CIQYRRLDGTMS--LPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW---WNP-- 900 (972)
Q Consensus 830 ld~L~~~L~~~--gi~~~~ldGs~s--~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~---WNp-- 900 (972)
.+.+++.|.+. ++++.++||.++ .+++++++++|.++ ++.||+. |+..+.|+|+..++.|+++|.+ ..|
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILVg-T~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILIG-TQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEEE-ChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 46677777776 788999999986 46799999999975 7777764 5889999999999999887665 233
Q ss_pred -------ChHHHHhHhhcccCCcccEEEEEEec
Q 002077 901 -------TTEDQAVDRAHRIGQTRPVTVTRLTI 926 (972)
Q Consensus 901 -------~~e~QAigRi~RiGQ~k~V~V~rli~ 926 (972)
....|+.||+.|.|....|.+..+-.
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 36789999999988777777655443
No 70
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.37 E-value=1.3e-12 Score=115.45 Aligned_cols=81 Identities=30% Similarity=0.497 Sum_probs=74.4
Q ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhc
Q 002077 832 LVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAH 911 (972)
Q Consensus 832 ~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~ 911 (972)
.|...|+..++.+..++|.++.++|.++++.|+.+ .. .+|+++.++++|+|++.+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNG-KI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcC-CC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 46778888899999999999999999999999975 33 66678899999999999999999999999999999999999
Q ss_pred ccC
Q 002077 912 RIG 914 (972)
Q Consensus 912 RiG 914 (972)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 71
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.37 E-value=2.2e-10 Score=129.30 Aligned_cols=121 Identities=18% Similarity=0.304 Sum_probs=92.9
Q ss_pred ceEEEEecchHHHHHHHHHHHhC----------------------CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQH----------------------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~----------------------gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
.|+|||-.-.++++.=...|.+. +.++++|+|+|++++|..++..|...... +|++
T Consensus 426 qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~--VLLc 503 (708)
T KOG0348|consen 426 QKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA--VLLC 503 (708)
T ss_pred ceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce--EEEe
Confidence 48899988777776555544332 44699999999999999999999986444 4556
Q ss_pred cCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHH
Q 002077 876 LKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKM 944 (972)
Q Consensus 876 lkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~l 944 (972)
+++++.||+|....-||-||||..++....|+||.-|+|-+-.--. |..+.-.| .+...+.+..+
T Consensus 504 TDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae--y~~~l~~~~~~ 568 (708)
T KOG0348|consen 504 TDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE--YVNYLKKHHIM 568 (708)
T ss_pred hhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH--HHHHHHhhcch
Confidence 7999999999999999999999999999999999999999877443 33333333 44444444433
No 72
>PRK09401 reverse gyrase; Reviewed
Probab=99.34 E-value=6e-11 Score=152.13 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=75.7
Q ss_pred eEEEEecchHH---HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe---cCccccccCCCC-CCEE
Q 002077 819 KSIVFSQWTRM---LDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS---LKAGNLGLNMVA-ASHV 891 (972)
Q Consensus 819 KvIVFSqft~~---ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS---lkagg~GLNLt~-A~~V 891 (972)
++|||++.... ++.|...|+..||++..++|.+ .+.+++|.++ ++.||+.+ +..++.||++.. ..+|
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEecCCCCceeecCCCCcceeEE
Confidence 79999998666 9999999999999999999999 2356999976 88999986 689999999998 7999
Q ss_pred EEecCCC------CCChHHHHhHhhccc
Q 002077 892 ILLDLWW------NPTTEDQAVDRAHRI 913 (972)
Q Consensus 892 I~~Dp~W------Np~~e~QAigRi~Ri 913 (972)
||||.|- .......+++|.-.+
T Consensus 404 I~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 404 IFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 9999996 445556777777543
No 73
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.34 E-value=7.8e-12 Score=142.91 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=94.2
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
..||||...+-.+-+...|...||.+..|.|.|++++|.-+++.++.- .++||+ |++..+.|++-..+|-||.+|++-
T Consensus 274 QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rILV-sTDLtaRGIDa~~vNLVVNiD~p~ 351 (980)
T KOG4284|consen 274 QALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRILV-STDLTARGIDADNVNLVVNIDAPA 351 (980)
T ss_pred HHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEEEE-ecchhhccCCccccceEEecCCCc
Confidence 889999999999999999999999999999999999999999999864 666655 779999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~ 927 (972)
+..+...||||++|+|.. -..|+.+..+
T Consensus 352 d~eTY~HRIGRAgRFG~~-G~aVT~~~~~ 379 (980)
T KOG4284|consen 352 DEETYFHRIGRAGRFGAH-GAAVTLLEDE 379 (980)
T ss_pred chHHHHHHhhhccccccc-ceeEEEeccc
Confidence 999999999999999964 4455544433
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.32 E-value=1.6e-10 Score=132.07 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=66.6
Q ss_pred ceEEEEecchHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEec
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHC--IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 895 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~g--i~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~D 895 (972)
.|+|||+.....++.+...|++.+ +.+..++|.++..+|.+.. +.. +|++|++.+.|||+... +|| ++
T Consensus 273 ~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGiDi~~~-~vi-~~ 342 (357)
T TIGR03158 273 ERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGVDFKRD-WLI-FS 342 (357)
T ss_pred CeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhcccCCCCc-eEE-EC
Confidence 399999999999999999999865 5788999999999987653 233 46677999999999764 666 56
Q ss_pred CCCCCChHHHHhHhhc
Q 002077 896 LWWNPTTEDQAVDRAH 911 (972)
Q Consensus 896 p~WNp~~e~QAigRi~ 911 (972)
| -++....||+||++
T Consensus 343 p-~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 A-RDAAAFWQRLGRLG 357 (357)
T ss_pred C-CCHHHHhhhcccCC
Confidence 4 46778888888863
No 75
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.30 E-value=2e-10 Score=129.96 Aligned_cols=135 Identities=24% Similarity=0.256 Sum_probs=113.2
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC--CCcEEEEe
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--CIQYRRLD 848 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~--gi~~~~ld 848 (972)
..||..|-..|+.+++. |+|||-..-.-+.++...+.+. |++..-|+
T Consensus 298 ~~Ki~~L~sFI~shlk~-------------------------------K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~ 346 (758)
T KOG0343|consen 298 EDKIDMLWSFIKSHLKK-------------------------------KSIVFLSSCKQVKFLYEAFCRLRPGIPLLALH 346 (758)
T ss_pred hhHHHHHHHHHHhcccc-------------------------------ceEEEEehhhHHHHHHHHHHhcCCCCceeeec
Confidence 45999999999988764 9999988888888998888865 99999999
Q ss_pred CCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 849 GTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 849 Gs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
|.|++..|..+..+|.. .-.++|++++.++.||++.+.+-||-+|.|-+.....+|.||.-|++-.-+-.++ +++
T Consensus 347 G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~--L~p- 421 (758)
T KOG0343|consen 347 GTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM--LTP- 421 (758)
T ss_pred cchhHHHHHHHHHHHHH--hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE--Ecc-
Confidence 99999999999999996 3456777889999999999999999999999999999999999999887765543 333
Q ss_pred CHHHHHHHHHHHH
Q 002077 929 TVEDRILKLQDDK 941 (972)
Q Consensus 929 TIEe~Il~lq~~K 941 (972)
+-||.++...++|
T Consensus 422 sEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 422 SEEEAMLKKLQKK 434 (758)
T ss_pred hhHHHHHHHHHHc
Confidence 3346665555544
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.28 E-value=4.1e-10 Score=132.49 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=64.7
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC-CCCChHHHHhHhhcccCCcc
Q 002077 841 CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW-WNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 841 gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~-WNp~~e~QAigRi~RiGQ~k 917 (972)
++.+..++|.|+.+++++++++|+++ ++.||+ ||.+.-+|+|+.+|+.+|++++- +--+...|--||++|=+...
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~-e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEG-EIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcC-CCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 56678999999999999999999975 666665 66999999999999999999887 66778899999999955443
No 77
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=4.2e-10 Score=133.79 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=73.1
Q ss_pred HHHHHHHHhC--CCcEEEEeCCCCHHHH--HHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC--CC-C---
Q 002077 831 DLVENSLNQH--CIQYRRLDGTMSLPAR--DRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW--WN-P--- 900 (972)
Q Consensus 831 d~L~~~L~~~--gi~~~~ldGs~s~~~R--~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~--WN-p--- 900 (972)
+.+++.|.+. +.++.++|+.++..++ +++++.|.++ ++.||+ +|...+.|+++...+.|+++|.+ .| |
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 5566666665 7889999999977665 8999999975 677766 55889999999999998766554 33 3
Q ss_pred ------ChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 901 ------TTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 901 ------~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
....|+.||++|-+....|.|..+...+
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 3578999999998887777765544443
No 78
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.27 E-value=2.7e-10 Score=124.59 Aligned_cols=108 Identities=25% Similarity=0.342 Sum_probs=96.4
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.|+|||+...-++|-|..-|.-.||....|+|.-.+..|+.+++.|+.+ .++||+. ++.++.||++.+..||+.||.+
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrILva-TDlaSRGlDv~DiTHV~NyDFP 543 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRILVA-TDLASRGLDVPDITHVYNYDFP 543 (629)
T ss_pred ceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEEEE-echhhcCCCchhcceeeccCCC
Confidence 4999999999999999999999999999999999999999999999976 8887775 4999999999999999999999
Q ss_pred CCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 898 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
-|-.....|+||.+|-|.+-. -|..|.-.|
T Consensus 544 ~nIeeYVHRvGrtGRaGr~G~-sis~lt~~D 573 (629)
T KOG0336|consen 544 RNIEEYVHRVGRTGRAGRTGT-SISFLTRND 573 (629)
T ss_pred ccHHHHHHHhcccccCCCCcc-eEEEEehhh
Confidence 999999999999999997654 344444444
No 79
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.26 E-value=1.4e-10 Score=129.90 Aligned_cols=127 Identities=16% Similarity=0.221 Sum_probs=110.5
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.+|+..|.+....| |+|||..-....+-|...|+..||.+..++|
T Consensus 451 ~~~Kl~wl~~~L~~f~S~g------------------------------kvlifVTKk~~~e~i~a~Lklk~~~v~llhg 500 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSEG------------------------------KVLIFVTKKADAEEIAANLKLKGFNVSLLHG 500 (731)
T ss_pred cHHHHHHHHHHhhhhccCC------------------------------cEEEEEeccCCHHHHHHHhccccceeeeecC
Confidence 4569999999998876655 8999999889999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dT 929 (972)
+|.+.+|.+.+.+|+.. ...|++++ +....||++.....||+||..-.-....|+|||..|-|-+ -..|.|+++..
T Consensus 501 dkdqa~rn~~ls~fKkk-~~~Vlvat-DvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKD 576 (731)
T KOG0339|consen 501 DKDQAERNEVLSKFKKK-RKPVLVAT-DVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKD 576 (731)
T ss_pred chhhHHHHHHHHHHhhc-CCceEEEe-eHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhh
Confidence 99999999999999975 55666654 9999999999999999999998888999999999999987 34566666553
Q ss_pred H
Q 002077 930 V 930 (972)
Q Consensus 930 I 930 (972)
.
T Consensus 577 a 577 (731)
T KOG0339|consen 577 A 577 (731)
T ss_pred H
Confidence 3
No 80
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.26 E-value=1.7e-10 Score=129.62 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..++-.+...|++.... . |||||+.--.+.+++...|+...+++..|+|.
T Consensus 314 ~~~f~ll~~~LKk~~~~-~-----------------------------KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk 363 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIKR-Y-----------------------------KIIVFFSTCMSVKFHAELLNYIDLPVLEIHGK 363 (543)
T ss_pred cchHHHHHHHHHHhcCC-c-----------------------------eEEEEechhhHHHHHHHHHhhcCCchhhhhcC
Confidence 34577888888887653 2 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCccc
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 918 (972)
.++..|.....+|... +- .+|+.+++++.|+|..+.+-||-||||-+|....+|+||..|-|-+-.
T Consensus 364 ~~Q~kRT~~~~~F~ka-es-gIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 364 QKQNKRTSTFFEFCKA-ES-GILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred CcccccchHHHHHhhc-cc-ceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 9999999999999975 33 345566999999999999999999999999999999999999776543
No 81
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.25 E-value=2.3e-10 Score=135.99 Aligned_cols=106 Identities=14% Similarity=0.203 Sum_probs=85.2
Q ss_pred ceEEEEecchHHHHHHHHHHHhC----C-CcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEE
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQH----C-IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 892 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~----g-i~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI 892 (972)
.|.||||--.+.++.+..+|... + -=+..|+|... +=++.|+.|-.......+.+|.+-+-+|++...+..++
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 49999999999999999999875 2 22568888864 44578999987444445566779999999999999999
Q ss_pred EecCCCCCChHHHHhHhhccc-------CCccc-EEEEEEe
Q 002077 893 LLDLWWNPTTEDQAVDRAHRI-------GQTRP-VTVTRLT 925 (972)
Q Consensus 893 ~~Dp~WNp~~e~QAigRi~Ri-------GQ~k~-V~V~rli 925 (972)
|+-+--+-....|-+||.-|+ ||.|. ..|+-|+
T Consensus 505 F~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 505 FDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred ehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 999999999999999999996 34454 5665554
No 82
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.25 E-value=4.8e-10 Score=144.15 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=68.3
Q ss_pred eEEEEecch---HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe---cCccccccCCCC-CCEE
Q 002077 819 KSIVFSQWT---RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS---LKAGNLGLNMVA-ASHV 891 (972)
Q Consensus 819 KvIVFSqft---~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS---lkagg~GLNLt~-A~~V 891 (972)
++|||++-. ..++.|...|+..|+++..++|.++ +++++.|.++ ++.||+.+ +..++.||++.. ..+|
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcC-CCCEEEEeccccCcccccCCCCccccEE
Confidence 789999988 8999999999999999999999996 3789999976 88999987 689999999999 6999
Q ss_pred EEecCCC
Q 002077 892 ILLDLWW 898 (972)
Q Consensus 892 I~~Dp~W 898 (972)
|+||+|=
T Consensus 403 I~~~~P~ 409 (1171)
T TIGR01054 403 VFLGVPK 409 (1171)
T ss_pred EEECCCC
Confidence 9999983
No 83
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.23 E-value=2.5e-10 Score=147.14 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=81.2
Q ss_pred eEEEEecchHHHHHHHHHHHhCC---------------------------------CcEEEEeCCCCHHHHHHHHHhhhc
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHC---------------------------------IQYRRLDGTMSLPARDRAVKDFNT 865 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~g---------------------------------i~~~~ldGs~s~~~R~~~I~~F~~ 865 (972)
++|||++.....+.+...|++.. +....++|+++.++|..+.+.|++
T Consensus 246 stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~ 325 (1490)
T PRK09751 246 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS 325 (1490)
T ss_pred CEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh
Confidence 88999999999998888887531 114567899999999999999997
Q ss_pred CCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhccc
Q 002077 866 DREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI 913 (972)
Q Consensus 866 ~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~Ri 913 (972)
+ ..+|++ +|.+...|||+...++||+|+.+.+.+...|++||++|.
T Consensus 326 G-~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 326 G-ELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred C-CceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 6 677665 559999999999999999999999999999999999985
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=1.7e-09 Score=132.35 Aligned_cols=132 Identities=11% Similarity=0.139 Sum_probs=112.8
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.++++.+.+..+.|. -|||||......+.|...|.+.||++..|+|
T Consensus 426 ~~~k~~av~~~i~~~~~~g~-----------------------------PVLVgt~Sie~sE~ls~~L~~~gi~h~vLna 476 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQ-----------------------------PVLVGTVSIEASEFLSQLLKKENIKHQVLNA 476 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCeEeecC
Confidence 34699999999999888887 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC--------------------------------------CCCEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV--------------------------------------AASHV 891 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt--------------------------------------~A~~V 891 (972)
.+...+|+.+.+.|+.+ . ++++|..+|.|+++. ..=||
T Consensus 477 k~~q~Ea~iia~Ag~~G-~---VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~V 552 (896)
T PRK13104 477 KFHEKEAQIIAEAGRPG-A---VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRI 552 (896)
T ss_pred CCChHHHHHHHhCCCCC-c---EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEE
Confidence 99999999999999976 2 466779999998865 23489
Q ss_pred EEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHH
Q 002077 892 ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939 (972)
Q Consensus 892 I~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~ 939 (972)
|.-+.+=|-..+.|..||++|.|..-....|- |+|+.++++-.
T Consensus 553 IgTerhesrRID~QLrGRaGRQGDPGss~f~l-----SleD~l~~~f~ 595 (896)
T PRK13104 553 IGSERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDNLMRIFA 595 (896)
T ss_pred EeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHHHhC
Confidence 99999999999999999999999977644432 66776665443
No 85
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.23 E-value=4.4e-10 Score=140.21 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=92.2
Q ss_pred eEEEEecchHHHHHHH----HHHHhCC----CcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCE
Q 002077 819 KSIVFSQWTRMLDLVE----NSLNQHC----IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASH 890 (972)
Q Consensus 819 KvIVFSqft~~ld~L~----~~L~~~g----i~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~ 890 (972)
|.|+|+.+...++.+. ..+...+ .....+.|.+...+|.++...|+.+ +..+++ ++.|.-.|+++-..+.
T Consensus 308 ~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g-~~~~~~-st~AlelgidiG~lda 385 (851)
T COG1205 308 QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG-ELLGVI-ATNALELGIDIGSLDA 385 (851)
T ss_pred eEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC-CccEEe-cchhhhhceeehhhhh
Confidence 9999999999999987 4444445 5578899999999999999999986 555554 7799999999999999
Q ss_pred EEEecCCC-CCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHH
Q 002077 891 VILLDLWW-NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936 (972)
Q Consensus 891 VI~~Dp~W-Np~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~ 936 (972)
||..-.|- .-....|+.||++|-||.-.+.+. .-.+.++..+..
T Consensus 386 vi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v--~~~~~~d~yy~~ 430 (851)
T COG1205 386 VIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV--LRSDPLDSYYLR 430 (851)
T ss_pred HhhcCCCCchHHHHHHhhhhccCCCCCceEEEE--eCCCccchhhhh
Confidence 99998887 567889999999999955543332 227777777655
No 86
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.22 E-value=5.4e-09 Score=127.23 Aligned_cols=112 Identities=15% Similarity=0.198 Sum_probs=88.1
Q ss_pred eEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEec-
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD- 895 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~D- 895 (972)
++|||..-...++.+...|.+. ++.+..|+|.+++. ++++++|...+..+| |++|..+++||++...++||.++
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kI-LVATdIAERGIDIp~V~~VID~G~ 473 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSI-IISTPYLESSVTIRNATHVYDTGR 473 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeE-EeccChhhccccccCeeEEEECCC
Confidence 8999999999999999999987 79999999999864 577888853335555 55779999999999999999997
Q ss_pred ---C--------CCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHH
Q 002077 896 ---L--------WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937 (972)
Q Consensus 896 ---p--------~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~l 937 (972)
| |.+.+...||.||++|. ++=.+|+|+.++.... |.++
T Consensus 474 ~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p-I~ri 522 (675)
T PHA02653 474 VYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP-IKRI 522 (675)
T ss_pred ccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH-HHHH
Confidence 2 12555667888877776 5678889998886543 4333
No 87
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.20 E-value=5.5e-11 Score=121.76 Aligned_cols=109 Identities=26% Similarity=0.313 Sum_probs=72.4
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCC
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (972)
.+|||||.+++.-++.........+.++|...+|.|||+++++++....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------------------------- 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------------------------- 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------------
Confidence 4799999999988886543221235689999999999999998886422
Q ss_pred cccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeC--CC-------
Q 002077 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHG--GS------- 422 (972)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G--~~------- 422 (972)
. ++|||||. +|+.||.++|..+... ...+....- ..
T Consensus 51 -----------------------------~---~~l~~~p~~~l~~Q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 96 (184)
T PF04851_consen 51 -----------------------------R---KVLIVAPNISLLEQWYDEFDDFGSE--KYNFFEKSIKPAYDSKEFIS 96 (184)
T ss_dssp -----------------------------C---EEEEEESSHHHHHHHHHHHHHHSTT--SEEEEE--GGGCCE-SEEET
T ss_pred -----------------------------c---ceeEecCHHHHHHHHHHHHHHhhhh--hhhhcccccccccccccccc
Confidence 1 59999997 7999999999887653 222211110 00
Q ss_pred CCC-----ChhhhcCCCEEEEchhhhhcc
Q 002077 423 RTK-----DPVELAKYDVVLTTYSIVTNE 446 (972)
Q Consensus 423 r~~-----~~~~l~~~DVVItTY~~l~~e 446 (972)
... ........++++++|+.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 125 (184)
T PF04851_consen 97 IQDDISDKSESDNNDKDIILTTYQSLQSD 125 (184)
T ss_dssp TTTEEEHHHHHCBSS-SEEEEEHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHhh
Confidence 000 012245788999999999764
No 88
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=2.6e-09 Score=129.99 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=99.2
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|+.++++.+......+. .+||||......+.|...|.+.||++..|+|.
T Consensus 423 ~~K~~al~~~i~~~~~~g~-----------------------------pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~ 473 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQ-----------------------------PVLVGTVAIESSERLSHLLDEAGIPHAVLNAK 473 (796)
T ss_pred HHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCeeEecCC
Confidence 4699999999988776666 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC---CCC-----EEEEecCCCCCChHHHHhHhhcccCCcccEE
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---AAS-----HVILLDLWWNPTTEDQAVDRAHRIGQTRPVT 920 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt---~A~-----~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~ 920 (972)
+...+++-+...|+.+ . ++++|..+|.|+++. .+. |||.++++-|...+.|++||++|.|..-...
T Consensus 474 ~~~~Ea~ii~~ag~~g---~-VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 474 NHAKEAEIIMNAGQRG---A-VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cHHHHHHHHHhcCCCc---e-EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 8755555555555543 2 466779999999994 566 9999999999999999999999999987653
No 89
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.17 E-value=1.3e-09 Score=121.71 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=101.8
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC--CCcEEEE
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--CIQYRRL 847 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~--gi~~~~l 847 (972)
..-|+..|+++|..... .|+|||-..-...++....|... .+.+..+
T Consensus 239 a~eK~~~lv~~L~~~~~-------------------------------kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~i 287 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNNNKD-------------------------------KKCIVFFPTCASVEYFGKLFSRLLKKREIFSI 287 (567)
T ss_pred HHHHHHHHHHHHhcccc-------------------------------ccEEEEecCcchHHHHHHHHHHHhCCCcEEEe
Confidence 45699999999987322 29999987777888888887765 7889999
Q ss_pred eCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 848 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 848 dGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
+|.|+.++|.++++.|... .-. +|+++++++.||++...+.||.||||-+|+...+|.||..|.|..-.-.|+
T Consensus 288 HGK~~q~~R~k~~~~F~~~-~~~-vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 288 HGKMSQKARAKVLEAFRKL-SNG-VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred cchhcchhHHHHHHHHHhc-cCc-eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 9999999999999999973 223 355779999999999999999999999999999999999999987765553
No 90
>PRK14701 reverse gyrase; Provisional
Probab=99.15 E-value=2.1e-09 Score=141.09 Aligned_cols=92 Identities=12% Similarity=0.177 Sum_probs=77.5
Q ss_pred eEEEEecchH---HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEec---CccccccCCCC-CCEE
Q 002077 819 KSIVFSQWTR---MLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL---KAGNLGLNMVA-ASHV 891 (972)
Q Consensus 819 KvIVFSqft~---~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSl---kagg~GLNLt~-A~~V 891 (972)
..|||++... .++.|...|...|+++..++|. |.+++++|.++ ++.||+.+. ..++.||++.. ..+|
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~~gvaaRGIDiP~~Vryv 405 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATYYGTLVRGLDLPERIRFA 405 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCCCCeeEecCccCCccCEE
Confidence 7899998655 3689999999999999999984 89999999986 888888774 57889999998 8999
Q ss_pred EEecCCC---CCChHHHH-------------hHhhcccCCc
Q 002077 892 ILLDLWW---NPTTEDQA-------------VDRAHRIGQT 916 (972)
Q Consensus 892 I~~Dp~W---Np~~e~QA-------------igRi~RiGQ~ 916 (972)
||||.|= +...+.|. ++|+.|-|..
T Consensus 406 i~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 406 VFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 9999997 55545554 4999998864
No 91
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.14 E-value=2.4e-10 Score=117.38 Aligned_cols=110 Identities=26% Similarity=0.274 Sum_probs=78.1
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCC
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (972)
..+++||.+++.++.... ...++...+|.|||..++.++......
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~----------------------------- 51 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKR----------------------------- 51 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcc-----------------------------
Confidence 469999999999988321 457999999999999887777643221
Q ss_pred cccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcC-chhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhc
Q 002077 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA 431 (972)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P-~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~ 431 (972)
.+.+.+||||| ..+..||..++.+.+.........++++.........+.
T Consensus 52 -----------------------------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (201)
T smart00487 52 -----------------------------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLE 102 (201)
T ss_pred -----------------------------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHh
Confidence 12356999999 678899999999987643225555666654332222232
Q ss_pred -C-CCEEEEchhhhhcc
Q 002077 432 -K-YDVVLTTYSIVTNE 446 (972)
Q Consensus 432 -~-~DVVItTY~~l~~e 446 (972)
. ++|+++||+.+...
T Consensus 103 ~~~~~v~~~t~~~l~~~ 119 (201)
T smart00487 103 SGKTDILVTTPGRLLDL 119 (201)
T ss_pred cCCCCEEEeChHHHHHH
Confidence 2 39999999988764
No 92
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.13 E-value=8.5e-09 Score=125.88 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=97.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHC-IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~g-i~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.+|||.+-.++.+.+...|++.+ ..+..=+||++.++|..+-++|+++ +.+++++| .....|++.-..+.||+|-.|
T Consensus 255 ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G-~lravV~T-SSLELGIDiG~vdlVIq~~SP 332 (814)
T COG1201 255 TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG-ELKAVVAT-SSLELGIDIGDIDLVIQLGSP 332 (814)
T ss_pred cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC-CceEEEEc-cchhhccccCCceEEEEeCCc
Confidence 89999999999999999999986 8899999999999999999999987 68887755 899999999999999999999
Q ss_pred CCCChHHHHhHhh-cccCCcccEEEEEEecCCCHHHHHHHHHHHHH
Q 002077 898 WNPTTEDQAVDRA-HRIGQTRPVTVTRLTIRDTVEDRILKLQDDKR 942 (972)
Q Consensus 898 WNp~~e~QAigRi-~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~ 942 (972)
=.-+...||+||+ ||+|.... ..++..+ .++.+.-+..-++
T Consensus 333 ~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~~~ 374 (814)
T COG1201 333 KSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLADL 374 (814)
T ss_pred HHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHHHH
Confidence 9999999999998 45665443 3334444 5555544433333
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=1.7e-08 Score=123.45 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|+.++++.+.+....+. .|||||......+.|...|.+.||++..|+|.
T Consensus 413 ~~K~~aI~~~I~~~~~~gr-----------------------------pVLIft~Si~~se~Ls~~L~~~gi~~~vLnak 463 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQ-----------------------------PVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463 (830)
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCceEeccCc
Confidence 4699999999988777666 89999999999999999999999999999996
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCC--------------------------------------CCEEE
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--------------------------------------ASHVI 892 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~--------------------------------------A~~VI 892 (972)
..+|++.|..|... ...|+| +|..+|.|+++.= .=|||
T Consensus 464 --q~eREa~Iia~Ag~-~g~VtI-ATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVi 539 (830)
T PRK12904 464 --NHEREAEIIAQAGR-PGAVTI-ATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVI 539 (830)
T ss_pred --hHHHHHHHHHhcCC-CceEEE-ecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEE
Confidence 68999999999964 445554 6699999988653 34999
Q ss_pred EecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHH
Q 002077 893 LLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 937 (972)
Q Consensus 893 ~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~l 937 (972)
.-+.+=|-..+.|..||++|.|..-....|- |.|+.++.+
T Consensus 540 gTerhesrRid~QlrGRagRQGdpGss~f~l-----SleD~l~~~ 579 (830)
T PRK12904 540 GTERHESRRIDNQLRGRSGRQGDPGSSRFYL-----SLEDDLMRI 579 (830)
T ss_pred ecccCchHHHHHHhhcccccCCCCCceeEEE-----EcCcHHHHh
Confidence 9999999999999999999999987755442 556555543
No 94
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.10 E-value=7.6e-09 Score=122.14 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=93.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
--||||......+.+...|...|+....++|.|+.++|+..-+.|..+ ++.||+.+ .|-|-|+|=.+...|||||+|=
T Consensus 232 ~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiVAT-~AFGMGIdKpdVRfViH~~lP~ 309 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMVAT-NAFGMGIDKPDVRFVIHYDLPG 309 (590)
T ss_pred CeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEe-ccccCccCCCCceEEEEecCCC
Confidence 479999999999999999999999999999999999999999999976 77777755 9999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEE
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V 921 (972)
+....-|=+||++|-|......+
T Consensus 310 s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 310 SIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred CHHHHHHHHhhccCCCCcceEEE
Confidence 99999999999999998877554
No 95
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.09 E-value=2.4e-09 Score=121.87 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=112.7
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.+.|++.+..+++....... +..-..+.|||+....-...|...|...|++..-+++
T Consensus 416 e~eK~~ii~~L~k~E~~~~s-----------------------skg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHa 472 (830)
T COG1202 416 ESEKWDIIARLVKREFSTES-----------------------SKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHA 472 (830)
T ss_pred chHHHHHHHHHHHHHHhhhh-----------------------ccCcCCceEEEecchhhHHHHHHHhhcCCcccccccC
Confidence 46788887777776554322 1111348999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE-----ecCCCCCChHHHHhHhhcccCCcccEEEEEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL-----LDLWWNPTTEDQAVDRAHRIGQTRPVTVTRL 924 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~-----~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rl 924 (972)
.++-.+|..+-..|... ...+++ +|.|.|.|+++.+. .||| =--|.+|.-.+|..||++|.|=...-.||-+
T Consensus 473 GL~y~eRk~vE~~F~~q-~l~~VV-TTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyll 549 (830)
T COG1202 473 GLPYKERKSVERAFAAQ-ELAAVV-TTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLL 549 (830)
T ss_pred CCcHHHHHHHHHHHhcC-CcceEe-ehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEE
Confidence 99999999999999975 666555 67999999999864 4543 3346699999999999999998777778878
Q ss_pred ecC---------CCHHHHHHHHHH
Q 002077 925 TIR---------DTVEDRILKLQD 939 (972)
Q Consensus 925 i~~---------dTIEe~Il~lq~ 939 (972)
+-. +|-|+.-++|.+
T Consensus 550 vepg~~Y~~~m~~TEdevA~kLL~ 573 (830)
T COG1202 550 VEPGKKYHASMEETEDEVAFKLLE 573 (830)
T ss_pred ecCChhhcccccccHHHHHHHHhc
Confidence 755 466666665543
No 96
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.08 E-value=1.4e-08 Score=110.28 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=103.5
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|-..+++.|+....+. ..-++||.|-+....+|...|+..++....+++-
T Consensus 236 ~vkdaYLv~~Lr~~~~~~----------------------------~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~ 287 (442)
T KOG0340|consen 236 DVKDAYLVHLLRDFENKE----------------------------NGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQ 287 (442)
T ss_pred hhhHHHHHHHHhhhhhcc----------------------------CceEEEEeehhHHHHHHHHHHhhhceeeeehhhc
Confidence 346667888888765532 2389999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCccc
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 918 (972)
|++++|..++.+|+.+ ..+|||.+ ++++.||+.....-||++|.|-.|.....|.||.-|-|..-.
T Consensus 288 m~Q~eR~~aLsrFrs~-~~~iliaT-DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 288 MPQKERLAALSRFRSN-AARILIAT-DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred chHHHHHHHHHHHhhc-CccEEEEe-chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 9999999999999976 77777655 999999999999999999999999999999999888887543
No 97
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.08 E-value=1.9e-08 Score=125.24 Aligned_cols=105 Identities=26% Similarity=0.297 Sum_probs=88.8
Q ss_pred eEEEEecchHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEec
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ---HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 895 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~---~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~D 895 (972)
++|||..-...++.+...|.+ .++.+..++|.++.++|.++++.|..+ ..+|+ ++|..+.+||++...++||.++
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkVl-VATnIAErgItIp~V~~VID~G 288 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKVV-LATNIAETSLTIEGIRVVIDSG 288 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEEE-EecchHhhcccccCceEEEEcC
Confidence 899999999999999999987 489999999999999999999999865 55555 5779999999999999999988
Q ss_pred CC----CCCCh--------------HHHHhHhhcccCCcccEEEEEEecCC
Q 002077 896 LW----WNPTT--------------EDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 896 p~----WNp~~--------------e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
.. +||.. ..||.||++|. ++=..|+|+.+.
T Consensus 289 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 289 LARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred cccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 65 55554 56888888876 566788888765
No 98
>PRK09694 helicase Cas3; Provisional
Probab=99.07 E-value=1.8e-08 Score=125.57 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=77.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCC---CcEEEEeCCCCHHHH----HHHHHhhhcCCCe--eEEEEecCccccccCCCCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPAR----DRAVKDFNTDREI--TVMLMSLKAGNLGLNMVAAS 889 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~g---i~~~~ldGs~s~~~R----~~~I~~F~~~~~~--~VlLiSlkagg~GLNLt~A~ 889 (972)
++|||++....+..+...|++.+ +++..++|.++..+| .++++.|..+... ..+|++|++...||++ .++
T Consensus 562 ~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~D 640 (878)
T PRK09694 562 QVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFD 640 (878)
T ss_pred EEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCC
Confidence 99999999999999999999764 678999999999998 4678899433221 3567788999999999 568
Q ss_pred EEEEecCCCCCChHHHHhHhhcccCCc
Q 002077 890 HVILLDLWWNPTTEDQAVDRAHRIGQT 916 (972)
Q Consensus 890 ~VI~~Dp~WNp~~e~QAigRi~RiGQ~ 916 (972)
.+|....+ .....||+||+||-|..
T Consensus 641 vlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 641 WLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred eEEECCCC--HHHHHHHHhccCCCCCC
Confidence 87775444 46889999999999974
No 99
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.05 E-value=8.1e-09 Score=127.34 Aligned_cols=104 Identities=21% Similarity=0.216 Sum_probs=78.8
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|+|..+|.-.+.. ....|+|-.+|.|||+.|+..|+.....
T Consensus 31 el~~~qq~av~~~~~~------~~N~li~aPTgsGKTlIA~lai~~~l~~------------------------------ 74 (766)
T COG1204 31 ELFNPQQEAVEKGLLS------DENVLISAPTGSGKTLIALLAILSTLLE------------------------------ 74 (766)
T ss_pred HhhHHHHHHhhccccC------CCcEEEEcCCCCchHHHHHHHHHHHHHh------------------------------
Confidence 7999999998654422 1336999999999999888877642211
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcC-chhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcC
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P-~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~ 432 (972)
...+.+-||| .+|..+=.+|+.+|-. ..++|.+++|.....+ ..+.+
T Consensus 75 -----------------------------~~~k~vYivPlkALa~Ek~~~~~~~~~--~GirV~~~TgD~~~~~-~~l~~ 122 (766)
T COG1204 75 -----------------------------GGGKVVYIVPLKALAEEKYEEFSRLEE--LGIRVGISTGDYDLDD-ERLAR 122 (766)
T ss_pred -----------------------------cCCcEEEEeChHHHHHHHHHHhhhHHh--cCCEEEEecCCcccch-hhhcc
Confidence 1245899999 5799998999984322 2799999999776543 78999
Q ss_pred CCEEEEchhhhhc
Q 002077 433 YDVVLTTYSIVTN 445 (972)
Q Consensus 433 ~DVVItTY~~l~~ 445 (972)
+|||||||+.+-+
T Consensus 123 ~~ViVtT~EK~Ds 135 (766)
T COG1204 123 YDVIVTTPEKLDS 135 (766)
T ss_pred CCEEEEchHHhhH
Confidence 9999999998854
No 100
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.05 E-value=1.9e-09 Score=122.20 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=104.1
Q ss_pred CceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 817 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 817 ~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
|.+.||||+..+-+..|.-.|+..+|+-..|+..|.+++|-+.+++|.+. +..+|+.+++++.||+++...|||||..
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~--~~~VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQS--PSGVLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcC--CCeEEEeehhhhccCCCCCcceEEEeec
Confidence 45999999999999999999999999999999999999999999999974 3445667799999999999999999999
Q ss_pred CCCCChHHHHhHhhcccCCcccEEEEEEecC---------------------CCHHHHHHHHHHHHHHHHHHh
Q 002077 897 WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR---------------------DTVEDRILKLQDDKRKMVASA 948 (972)
Q Consensus 897 ~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~---------------------dTIEe~Il~lq~~K~~li~~a 948 (972)
|-.-.....|-||.-|-+..- |.|. |+.+ =.|++.|+.....+-+|+..+
T Consensus 541 PrtseiYVHRSGRTARA~~~G-vsvm-l~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei 611 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSEG-VSVM-LCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREI 611 (731)
T ss_pred CCccceeEecccccccccCCC-eEEE-EeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHH
Confidence 999999999999998876431 2221 1111 146778877777766666544
No 101
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.03 E-value=9.4e-09 Score=118.29 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=102.1
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHH-HhCCCcEEEEe
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHCIQYRRLD 848 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L-~~~gi~~~~ld 848 (972)
...|+-++.+++..-++ ..+|||.|...-..-|...| .-.+|.+-.++
T Consensus 371 e~~K~lA~rq~v~~g~~-------------------------------PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh 419 (593)
T KOG0344|consen 371 EKGKLLALRQLVASGFK-------------------------------PPVLIFVQSKERAKQLFEELEIYDNINVDVIH 419 (593)
T ss_pred chhHHHHHHHHHhccCC-------------------------------CCeEEEEecHHHHHHHHHHhhhccCcceeeEe
Confidence 34688898888877543 27899999999999999999 56699999999
Q ss_pred CCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCccc
Q 002077 849 GTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 849 Gs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 918 (972)
|..++.+|.+.+++|+.+ ++-||+++ ...+.|+++..+|.||+||.+=.-.....+|||.+|-|+.-.
T Consensus 420 ~e~~~~qrde~~~~FR~g-~IwvLicT-dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIG-KIWVLICT-DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred cccchhHHHHHHHHHhcc-CeeEEEeh-hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc
Confidence 999999999999999986 77777755 999999999999999999999888899999999999998765
No 102
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.02 E-value=1.5e-09 Score=104.84 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=64.2
Q ss_pred CceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccc
Q 002077 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRS 377 (972)
Q Consensus 298 GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~ 377 (972)
+.++...+|.|||.++++++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~------------------------------------------------------ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS------------------------------------------------------ 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc------------------------------------------------------
Confidence 57999999999999999999753321
Q ss_pred ccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCCh--hhhcCCCEEEEchhhhhcc
Q 002077 378 FSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--VELAKYDVVLTTYSIVTNE 446 (972)
Q Consensus 378 ~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~--~~l~~~DVVItTY~~l~~e 446 (972)
...+++|||||.. +..||..++.++... .+.+.++++....... ......+|+++||+.+...
T Consensus 28 ----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~ 93 (144)
T cd00046 28 ----LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDE 93 (144)
T ss_pred ----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHH
Confidence 1235699999987 556667777777642 4667777776543322 2356899999999988653
No 103
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.01 E-value=3.8e-08 Score=122.84 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=87.5
Q ss_pred eEEEEecchHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEec
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ---HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 895 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~---~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~D 895 (972)
.+|||..-...++.+...|.+ .++.+..++|.++.++|.++++.|..+ ..+| |++|..+.+||++...++||.++
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rkV-lvATnIAErsLtIp~V~~VID~G 291 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRKV-VLATNIAETSLTIEGIRLVVDSG 291 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeEE-EEecchHHhcccccCceEEEECC
Confidence 899999999999999999987 588899999999999999999999864 4555 55779999999999999999966
Q ss_pred CC----CCCC--------------hHHHHhHhhcccCCcccEEEEEEecCCC
Q 002077 896 LW----WNPT--------------TEDQAVDRAHRIGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 896 p~----WNp~--------------~e~QAigRi~RiGQ~k~V~V~rli~~dT 929 (972)
.. |+|. ...||.||++|. .+=..|+|+.+..
T Consensus 292 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 292 LERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred CcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 54 4433 356777777666 5788999998764
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=1.1e-07 Score=116.24 Aligned_cols=132 Identities=13% Similarity=0.151 Sum_probs=112.8
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.++++.+.+..+.|. .|||||......+.|...|.+.||++..|++
T Consensus 431 ~~~K~~Aii~ei~~~~~~Gr-----------------------------pVLV~t~sv~~se~ls~~L~~~gi~~~vLna 481 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQ-----------------------------PVLVGTVSIEQSELLARLMVKEKIPHEVLNA 481 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCeEeccC
Confidence 45799999999999988887 9999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC-------------------------------------CCCEEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV-------------------------------------AASHVI 892 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt-------------------------------------~A~~VI 892 (972)
.++..+|..+.+.|+.+. ++++|..+|.|+++. ..=|||
T Consensus 482 k~~~~Ea~ii~~Ag~~G~----VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI 557 (908)
T PRK13107 482 KFHEREAEIVAQAGRTGA----VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL 557 (908)
T ss_pred cccHHHHHHHHhCCCCCc----EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE
Confidence 999999999999999763 466779999998865 234899
Q ss_pred EecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHH
Q 002077 893 LLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939 (972)
Q Consensus 893 ~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~ 939 (972)
.-+.+=|-..+.|..||++|.|..-.-..|- |+|+.++++-.
T Consensus 558 gTerheSrRID~QLrGRaGRQGDPGss~f~l-----SlED~L~r~f~ 599 (908)
T PRK13107 558 GTERHESRRIDNQLRGRAGRQGDAGSSRFYL-----SMEDSLMRIFA 599 (908)
T ss_pred ecccCchHHHHhhhhcccccCCCCCceeEEE-----EeCcHHHHHhC
Confidence 9999999999999999999999976633332 56776665433
No 105
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.96 E-value=2.3e-08 Score=121.85 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=104.0
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+..|+++|.+..+.+ ++|||++--.-+|.|.+.|.+.|+.+..|+|
T Consensus 596 e~eKf~kL~eLl~e~~e~~------------------------------~tiiFv~~qe~~d~l~~~L~~ag~~~~slHG 645 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDG------------------------------KTIIFVDKQEKADALLRDLQKAGYNCDSLHG 645 (997)
T ss_pred chHHHHHHHHHHHHHhhcC------------------------------CEEEEEcCchHHHHHHHHHHhcCcchhhhcC
Confidence 4579999999998877643 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~ 927 (972)
..++..|...|++|+++ .+ .||+.|+..+.||+...-..||+||.+=--.....|.||..|-|.+- .-|.|+..
T Consensus 646 gv~q~dR~sti~dfK~~-~~-~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 646 GVDQHDRSSTIEDFKNG-VV-NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred CCchHHHHhHHHHHhcc-Cc-eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999999975 44 45556699999999999999999999866666777777777777666 34445554
No 106
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.96 E-value=9.2e-09 Score=115.79 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=88.1
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||.+-......+.-.|--.|+++.-|+|++++.+|...++.|+.. .+.|||. ++.++.||++...-.||+|+.|-
T Consensus 428 ~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvLia-TDvAsRGLDI~gV~tVINy~mP~ 505 (691)
T KOG0338|consen 428 RTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVLIA-TDVASRGLDIEGVQTVINYAMPK 505 (691)
T ss_pred ceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEEEE-echhhccCCccceeEEEeccCch
Confidence 899999999999999999999999999999999999999999999975 7887775 59999999999999999999998
Q ss_pred CCChHHHHhHhhcccCCc
Q 002077 899 NPTTEDQAVDRAHRIGQT 916 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~ 916 (972)
.-....+|+||.-|-|..
T Consensus 506 t~e~Y~HRVGRTARAGRa 523 (691)
T KOG0338|consen 506 TIEHYLHRVGRTARAGRA 523 (691)
T ss_pred hHHHHHHHhhhhhhcccC
Confidence 888888899988888864
No 107
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.85 E-value=9.8e-07 Score=109.90 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=85.9
Q ss_pred eEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
+|-...+-...++-+...|++. ..++...+|.|+..+-++++.+|.++ ...|||++ .-.-.||++..||.+|+-+-
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-~~dVLv~T-TIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-EYDVLVCT-TIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-CCCEEEEe-eeeecCcCCCCCceEEEecc
Confidence 5555555666677777777765 55678999999999999999999976 77777755 78888999999999998665
Q ss_pred C-CCCChHHHHhHhhcccCCcccEEEEEEecCC-----CHHHHHHHHHH
Q 002077 897 W-WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD-----TVEDRILKLQD 939 (972)
Q Consensus 897 ~-WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d-----TIEe~Il~lq~ 939 (972)
. +=-+..-|--||++|-.+ .-+-|-++-.+ .-+.|+..+++
T Consensus 883 D~fGLsQLyQLRGRVGRS~~--~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNK--QAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred ccccHHHHHHhccccCCccc--eEEEEEeecCccccCHHHHHHHHHHHh
Confidence 4 456678899898887643 34555555432 45556655554
No 108
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.83 E-value=3.3e-08 Score=107.86 Aligned_cols=109 Identities=18% Similarity=0.274 Sum_probs=92.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
..||||+-..++.+|...|.+.|..+..++|.+...+|.++|++|+.+ ..+|| +++.+.+.|++.+..+.||+||++-
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kVL-itTnV~ARGiDv~qVs~VvNydlP~ 409 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKVL-ITTNVCARGIDVAQVSVVVNYDLPV 409 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceEE-EEechhhcccccceEEEEEecCCcc
Confidence 789999999999999999999999999999999999999999999976 55555 4679999999999999999999986
Q ss_pred ------CCChHHHHhHhhcccCCcccEEEEEEe-cCCCHH
Q 002077 899 ------NPTTEDQAVDRAHRIGQTRPVTVTRLT-IRDTVE 931 (972)
Q Consensus 899 ------Np~~e~QAigRi~RiGQ~k~V~V~rli-~~dTIE 931 (972)
.+.+..+||||.+|+|.+-- -|- |+ .+++.+
T Consensus 410 ~~~~~pD~etYlHRiGRtGRFGkkG~-a~n-~v~~~~s~~ 447 (477)
T KOG0332|consen 410 KYTGEPDYETYLHRIGRTGRFGKKGL-AIN-LVDDKDSMN 447 (477)
T ss_pred ccCCCCCHHHHHHHhcccccccccce-EEE-eecccCcHH
Confidence 45578899999999996543 333 44 344443
No 109
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=4.6e-07 Score=111.51 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=107.4
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|+.++++.|......+. .|||||......+.|...|...||++..|++
T Consensus 581 ~eK~~Ali~~I~~~~~~gr-----------------------------pVLIft~Sve~sE~Ls~~L~~~gI~h~vLna- 630 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQ-----------------------------PVLVGTASVEVSETLSRMLRAKRIAHNVLNA- 630 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCceeecC-
Confidence 4699999999988877766 9999999999999999999999999999997
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCC---CC-----EEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA---AS-----HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~---A~-----~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
...+|++.|..|... ...| +++|..+|.|+++.- +. |||.++.+-+.....|++||++|.|..-....|
T Consensus 631 -kq~~REa~Iia~AG~-~g~V-tIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff 707 (1025)
T PRK12900 631 -KQHDREAEIVAEAGQ-KGAV-TIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY 707 (1025)
T ss_pred -CHHHhHHHHHHhcCC-CCeE-EEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE
Confidence 478999999999964 4444 556699999999883 32 558999999999999999999999997764222
Q ss_pred EEecCCCHHHHHHHHHH
Q 002077 923 RLTIRDTVEDRILKLQD 939 (972)
Q Consensus 923 rli~~dTIEe~Il~lq~ 939 (972)
. |.|+.++++-.
T Consensus 708 v-----SleD~Lmr~f~ 719 (1025)
T PRK12900 708 V-----SLEDELMRLFG 719 (1025)
T ss_pred e-----chhHHHHHhhC
Confidence 1 56676665443
No 110
>COG4889 Predicted helicase [General function prediction only]
Probab=98.77 E-value=6.7e-07 Score=106.05 Aligned_cols=92 Identities=23% Similarity=0.274 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHhhhc-CC-CeeEEEEecCccccccCCCCCCEEEEecCCCC
Q 002077 826 WTRMLDLVENSLNQH----CIQYRRLDGTMSLPARDRAVKDFNT-DR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWN 899 (972)
Q Consensus 826 ft~~ld~L~~~L~~~----gi~~~~ldGs~s~~~R~~~I~~F~~-~~-~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WN 899 (972)
|...++.....|.+. .+.+.-+||+|...+|.+....-+. .+ +++| |-..+|+++|++..+-+.|||+||--.
T Consensus 480 Fe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~s 558 (1518)
T COG4889 480 FETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRSS 558 (1518)
T ss_pred HHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCchh
Confidence 555555444444443 4556789999999999665554432 22 5555 446699999999999999999999987
Q ss_pred CChHHHHhHhhcccCCccc
Q 002077 900 PTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 900 p~~e~QAigRi~RiGQ~k~ 918 (972)
-....||+||+-|---.|.
T Consensus 559 mVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 559 MVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred HHHHHHHHHHHHHhCcCCc
Confidence 7888999999999766554
No 111
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.72 E-value=5.5e-08 Score=101.98 Aligned_cols=109 Identities=18% Similarity=0.177 Sum_probs=76.4
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|++||.+++.-+.+ ++..+++-..|.|||++.+..++......
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~~----------------------------- 64 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDPS----------------------------- 64 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHhh-----------------------------
Confidence 489999999988884 34579999999999998555444322110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhhhc
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELA 431 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~l~ 431 (972)
.......+|||||. .|+.||...+.++... ..+++..++|..... ....+.
T Consensus 65 --------------------------~~~~~~~viii~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (203)
T cd00268 65 --------------------------PKKDGPQALILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLK 117 (203)
T ss_pred --------------------------cccCCceEEEEcCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhc
Confidence 00122459999996 5899999999987654 368888888865432 222333
Q ss_pred -CCCEEEEchhhhhc
Q 002077 432 -KYDVVLTTYSIVTN 445 (972)
Q Consensus 432 -~~DVVItTY~~l~~ 445 (972)
..+|+|+|.+.+..
T Consensus 118 ~~~~iiv~T~~~l~~ 132 (203)
T cd00268 118 RGPHIVVATPGRLLD 132 (203)
T ss_pred CCCCEEEEChHHHHH
Confidence 78999999887754
No 112
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=2e-06 Score=105.72 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|+.++++.+.+..+.|. -|||-+.....-+.|...|.+.||++..|...
T Consensus 551 ~~k~~ai~~ei~~~~~~gr-----------------------------PvLigt~si~~se~ls~~L~~~gi~h~vLNak 601 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGN-----------------------------PILIGTESVEVSEKLSRILRQNRIEHTVLNAK 601 (970)
T ss_pred HHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCcceecccc
Confidence 4799999999999888877 89999999999999999999999999999887
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCC--------CCEEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--------ASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~--------A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
.. ..-.++|.+-- ...-+.++|.-+|.|.++.- .=|||.-..+=|...+.|..||++|.|..-.-..|
T Consensus 602 ~~-~~Ea~iia~AG---~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 602 NH-AQEAEIIAGAG---KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred hh-hhHHHHHHhcC---CCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 43 23334554433 22334567788889977542 34999999999999999999999999997764333
Q ss_pred EEecCCCHHHHHHHHH
Q 002077 923 RLTIRDTVEDRILKLQ 938 (972)
Q Consensus 923 rli~~dTIEe~Il~lq 938 (972)
- |.|+.++.+-
T Consensus 678 l-----SlEDdL~~~f 688 (970)
T PRK12899 678 L-----SFEDRLMRLF 688 (970)
T ss_pred E-----EcchHHHHHh
Confidence 2 5677766543
No 113
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.70 E-value=5.4e-07 Score=99.82 Aligned_cols=225 Identities=16% Similarity=0.181 Sum_probs=130.3
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchh---------HHHHHHHHHHHHhhcCCCcccccccccccccc
Q 002077 589 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN---------YANILLMLLRLRQACDHPLLVKEYDFDSVGKI 659 (972)
Q Consensus 589 ~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~---------~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~ 659 (972)
+..+.+.|+.-|+++|+.+.......+..+......... ...+-.++.+|+.+|+||.|+........-..
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll~ 84 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLLL 84 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-S
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcccccc
Confidence 677899999999999999998888888777644332222 24566788999999999999765332100000
Q ss_pred hHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccccccc
Q 002077 660 SGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKT 739 (972)
Q Consensus 660 ~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~ 739 (972)
.++
T Consensus 85 ~e~----------------------------------------------------------------------------- 87 (297)
T PF11496_consen 85 SEP----------------------------------------------------------------------------- 87 (297)
T ss_dssp TTH-----------------------------------------------------------------------------
T ss_pred chH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCce
Q 002077 740 TLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIK 819 (972)
Q Consensus 740 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 819 (972)
.....+.|+|+..|-++|..++.... ...+.+
T Consensus 88 ------------------------~~~~~~tS~KF~~L~~Li~~li~~~~------------------------~~~~~~ 119 (297)
T PF11496_consen 88 ------------------------AEWLAYTSGKFQFLNDLIDSLIDRDR------------------------REYPLH 119 (297)
T ss_dssp ------------------------HHHHHHT-HHHHHHHHHHHHH-----------------------------TTSSEE
T ss_pred ------------------------HHHHHHcCchHHHHHHHHHHHHhhhc------------------------ccCCce
Confidence 00011378999998888888754221 112359
Q ss_pred EEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH------------Hhhh--cCCCeeEEEEecCcccc----
Q 002077 820 SIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAV------------KDFN--TDREITVMLMSLKAGNL---- 881 (972)
Q Consensus 820 vIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I------------~~F~--~~~~~~VlLiSlkagg~---- 881 (972)
+||.++-..++|+||..|...++.|.|++|.+-.++....- .... ....+.|.|++++-.-.
T Consensus 120 ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~ 199 (297)
T PF11496_consen 120 ILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPP 199 (297)
T ss_dssp EEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS-
T ss_pred EEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCC
Confidence 99999999999999999999999999999987554433322 0111 12367788888665433
Q ss_pred ccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHH
Q 002077 882 GLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939 (972)
Q Consensus 882 GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~ 939 (972)
.++-...+.||-+|+.+++....-..=|...-.+ +.+-|+||++.+|+|-.++.+..
T Consensus 200 ~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 200 LLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp -TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTT
T ss_pred ccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccC
Confidence 2333456899999999999876544334332222 88999999999999998877666
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.69 E-value=3.3e-06 Score=101.55 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=102.8
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.++++.+.+..+.|. -|||.+.....-+.|...|.+.||+...|..
T Consensus 409 ~~~k~~Aii~ei~~~~~~Gr-----------------------------PVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA 459 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQ-----------------------------PVLVGTHDVAESEELAERLRAAGVPAVVLNA 459 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCC-----------------------------CEEEEeCCHHHHHHHHHHHHhCCCcceeecc
Confidence 34699999999999888887 8999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC---------------CCCEEEEecCCCCCChHHHHhHhhcccC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---------------AASHVILLDLWWNPTTEDQAVDRAHRIG 914 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt---------------~A~~VI~~Dp~WNp~~e~QAigRi~RiG 914 (972)
... .+-.++|.+--. ..-+-++|.-+|.|-++. ..=|||.-+.+=|-..+.|..||++|.|
T Consensus 460 k~~-~~EA~IIa~AG~---~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 460 KND-AEEARIIAEAGK---YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred Cch-HhHHHHHHhcCC---CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 743 333455554432 233456778888997765 2359999999999999999999999999
Q ss_pred CcccEEEEEEecCCCHHHHHHHHHH
Q 002077 915 QTRPVTVTRLTIRDTVEDRILKLQD 939 (972)
Q Consensus 915 Q~k~V~V~rli~~dTIEe~Il~lq~ 939 (972)
..-....|- |+|+.++.+-.
T Consensus 536 DpGss~f~l-----SleDdl~~~f~ 555 (764)
T PRK12326 536 DPGSSVFFV-----SLEDDVVAANL 555 (764)
T ss_pred CCCceeEEE-----EcchhHHHhcC
Confidence 977644432 56666665544
No 115
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.67 E-value=8.8e-07 Score=110.39 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=94.8
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhc--CCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT--DREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~--~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
|++|.++-...+.-+...|+..+-++..|++.++...|.+.+++..+ ..+-..++++|++.-+|+|+. .+. ++-|+
T Consensus 442 kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~-mITe~ 519 (733)
T COG1203 442 KVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDV-LITEL 519 (733)
T ss_pred cEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCe-eeecC
Confidence 99999999999999999999987789999999999999999997663 223344566789999999998 343 34444
Q ss_pred CCCCChHHHHhHhhcccC--CcccEEEEEEecCCCHHHHHHHHHHHHHH
Q 002077 897 WWNPTTEDQAVDRAHRIG--QTRPVTVTRLTIRDTVEDRILKLQDDKRK 943 (972)
Q Consensus 897 ~WNp~~e~QAigRi~RiG--Q~k~V~V~rli~~dTIEe~Il~lq~~K~~ 943 (972)
. -.....||.||++|-| ....++|+...-......+.++....+..
T Consensus 520 a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 567 (733)
T COG1203 520 A-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLK 567 (733)
T ss_pred C-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhc
Confidence 3 2357889999999999 55668888777777766666665555554
No 116
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.64 E-value=1e-07 Score=104.20 Aligned_cols=121 Identities=20% Similarity=0.275 Sum_probs=101.4
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
+||||+.-..-+|-|.++|--.|+..+.|+|.-.+++|..+|+.|+.+ +-.||+ .+++++-||++++..|||+||.+-
T Consensus 423 pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~g-kKDVLV-ATDVASKGLDFp~iqHVINyDMP~ 500 (610)
T KOG0341|consen 423 PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAG-KKDVLV-ATDVASKGLDFPDIQHVINYDMPE 500 (610)
T ss_pred ceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcC-CCceEE-EecchhccCCCccchhhccCCChH
Confidence 899999999999999999999999999999999999999999999986 445555 559999999999999999999997
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHH----HHHHHHH
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK----LQDDKRK 943 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~----lq~~K~~ 943 (972)
.-.....||||.+|-|.+-- -+.||-+++-|..++. ||+.|++
T Consensus 501 eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLlDLK~LL~EakQ~ 547 (610)
T KOG0341|consen 501 EIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLLDLKHLLQEAKQE 547 (610)
T ss_pred HHHHHHHHhcccCCCCCcce--eeeeecccchHHHHHHHHHHHHHhhcc
Confidence 77777788888888887653 3457777776665554 3555554
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.64 E-value=1.4e-05 Score=91.46 Aligned_cols=137 Identities=19% Similarity=0.232 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
...++-|+..++...+.+. ++||-+--..|.+-|..+|.+.||++..++..
T Consensus 429 ~~QvdDL~~EI~~r~~~~e-----------------------------RvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSd 479 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNE-----------------------------RVLVTTLTKKMAEDLTEYLKELGIKVRYLHSD 479 (663)
T ss_pred CCcHHHHHHHHHHHHhcCC-----------------------------eEEEEeehHHHHHHHHHHHHhcCceEEeeecc
Confidence 3467888888888777766 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC-----CCChHHHHhHhhcccCCcccEEEEEEe
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-----NPTTEDQAVDRAHRIGQTRPVTVTRLT 925 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W-----Np~~e~QAigRi~RiGQ~k~V~V~rli 925 (972)
...-+|.++|++.+.+ ...||+ ....+-+||+|..++-|.++|-.- +-....|-|||+-|=-.- .|..|-=.
T Consensus 480 idTlER~eIirdLR~G-~~DvLV-GINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~ 556 (663)
T COG0556 480 IDTLERVEIIRDLRLG-EFDVLV-GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADK 556 (663)
T ss_pred chHHHHHHHHHHHhcC-CccEEE-eehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchh
Confidence 9999999999999975 666665 568899999999999999999763 677899999999984322 24444333
Q ss_pred cCCCHHHHHHHHHH
Q 002077 926 IRDTVEDRILKLQD 939 (972)
Q Consensus 926 ~~dTIEe~Il~lq~ 939 (972)
+-++++.-|-+-..
T Consensus 557 iT~sM~~Ai~ET~R 570 (663)
T COG0556 557 ITDSMQKAIDETER 570 (663)
T ss_pred hhHHHHHHHHHHHH
Confidence 44556655555443
No 118
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.63 E-value=3.7e-08 Score=105.34 Aligned_cols=97 Identities=21% Similarity=0.306 Sum_probs=92.4
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
..||||..+..+++|+..+.+.|+++..++..|.++.|.++..+|.++ .++.|++| +..-.|++.|+.|+||.+|.+-
T Consensus 324 QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVct-DL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVCT-DLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeeeh-hhhhcccccceeeEEEecCCCC
Confidence 889999999999999999999999999999999999999999999976 88988877 9999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcc
Q 002077 899 NPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k 917 (972)
|+.....||||.+|+|---
T Consensus 402 ~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred CHHHHHHHccCCccCCCcc
Confidence 9999999999999999643
No 119
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.63 E-value=1.8e-06 Score=110.73 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=85.5
Q ss_pred ceEEEEecchHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEe
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 894 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~g---i~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~ 894 (972)
.++|||..-...++.+...|.+.+ +.+..++|.++.++|.++++.+ +..+ +|++|..+.+||++....+||.+
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rk-IVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRR-IVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCce-EEEeccHHHhccccCCeeEEEeC
Confidence 389999999999999999998874 4578899999999999885543 2334 46678999999999999999987
Q ss_pred cCC----C--------------CCChHHHHhHhhcccCCcccEEEEEEecCCCHH
Q 002077 895 DLW----W--------------NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931 (972)
Q Consensus 895 Dp~----W--------------Np~~e~QAigRi~RiGQ~k~V~V~rli~~dTIE 931 (972)
+.. + +.+...||.||++|.| +=..|+|+.+...+
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 632 2 3346789999999987 76788999876443
No 120
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.63 E-value=2.9e-07 Score=112.50 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..++..+++.|+...+.+. ++|||+.....++.|...|.+.|+++..++|.
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~-----------------------------~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~ 475 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNE-----------------------------RVLVTTLTKKMAEDLTDYLKELGIKVRYLHSE 475 (655)
T ss_pred cchHHHHHHHHHHHHcCCC-----------------------------EEEEEECCHHHHHHHHHHHhhhccceeeeeCC
Confidence 4578899999998877776 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEec-----CCCCCChHHHHhHhhcccCCcccEEEEEEe
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD-----LWWNPTTEDQAVDRAHRIGQTRPVTVTRLT 925 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~D-----p~WNp~~e~QAigRi~RiGQ~k~V~V~rli 925 (972)
++..+|.++++.|..+ .+.|++ ++...++|+++..++.||++| .+=+.....|++||+.|.. .- .|+-|+
T Consensus 476 ~~~~eR~~~l~~fr~G-~i~VLV-~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~ 550 (655)
T TIGR00631 476 IDTLERVEIIRDLRLG-EFDVLV-GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYA 550 (655)
T ss_pred CCHHHHHHHHHHHhcC-CceEEE-EcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEE
Confidence 9999999999999865 666655 569999999999999999999 3446778899999999973 22 344454
Q ss_pred cCC
Q 002077 926 IRD 928 (972)
Q Consensus 926 ~~d 928 (972)
...
T Consensus 551 ~~~ 553 (655)
T TIGR00631 551 DKI 553 (655)
T ss_pred cCC
Confidence 444
No 121
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.58 E-value=6.5e-06 Score=105.52 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=83.7
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCc---EEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEe
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQ---YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 894 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~---~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~ 894 (972)
.++|||..-...++.+...|...+++ +..++|.++.++|.++++.+ +..+ +|++|..+..||++.+..+||.+
T Consensus 287 GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rk-IIVATNIAEtSITIpgI~yVID~ 362 (1294)
T PRK11131 287 GDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRR-IVLATNVAETSLTVPGIKYVIDP 362 (1294)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCee-EEEeccHHhhccccCcceEEEEC
Confidence 48999999999999999999988775 56899999999999887653 2444 45677999999999999999987
Q ss_pred c---------------CCCCC---ChHHHHhHhhcccCCcccEEEEEEecCCCH
Q 002077 895 D---------------LWWNP---TTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 930 (972)
Q Consensus 895 D---------------p~WNp---~~e~QAigRi~RiGQ~k~V~V~rli~~dTI 930 (972)
+ ++-.| +...||.||++|. .+=..|+|+.++..
T Consensus 363 Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 363 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred CCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 4 33333 4567777777777 46678889887643
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.58 E-value=8.4e-07 Score=109.07 Aligned_cols=122 Identities=19% Similarity=0.231 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..++..+++.|+...+.+. ++|||+.....++.|...|...|+++..++|.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~-----------------------------~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~ 479 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGE-----------------------------RVLVTTLTKRMAEDLTDYLKELGIKVRYLHSD 479 (652)
T ss_pred cccHHHHHHHHHHHHhCCC-----------------------------EEEEEeCCHHHHHHHHHHHhhcceeEEEEECC
Confidence 3568899999998887766 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC-----CCCCChHHHHhHhhcccCCcccEEEEEEe
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL-----WWNPTTEDQAVDRAHRIGQTRPVTVTRLT 925 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp-----~WNp~~e~QAigRi~RiGQ~k~V~V~rli 925 (972)
++..+|.++++.|..+ .+.|+ +++...+.|+++..++.||++|. +=++....|++||++|- . .=.++.|+
T Consensus 480 ~~~~~R~~~l~~f~~g-~i~vl-V~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~ 554 (652)
T PRK05298 480 IDTLERVEIIRDLRLG-EFDVL-VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYA 554 (652)
T ss_pred CCHHHHHHHHHHHHcC-CceEE-EEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEe
Confidence 9999999999999865 56655 46699999999999999999996 34778899999999994 2 22344455
Q ss_pred c
Q 002077 926 I 926 (972)
Q Consensus 926 ~ 926 (972)
.
T Consensus 555 ~ 555 (652)
T PRK05298 555 D 555 (652)
T ss_pred c
Confidence 4
No 123
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.40 E-value=3.8e-05 Score=95.52 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=65.7
Q ss_pred eeEEEEcccccccccchHHHHHHHhhhhcc------ceeeccCcCCcHHHHHHHHHHHHHHHhhhccccc---cCCCCcc
Q 002077 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKR------STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF---IDGQPII 582 (972)
Q Consensus 512 w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~------~~i~tPi~~~~~~~~~~L~~lL~~~~LRRtK~~v---~~g~pi~ 582 (972)
...||+||||++.... .-+-.+.-.+.+. -++..|- ....+|..|..+++...+++.--.- .+-.+-+
T Consensus 32 itgiiv~~Ahr~~~~~-~eaFI~rlyr~~n~~gfIkafSdsP~--~~~~g~~~l~~vmk~L~i~~v~l~prf~~~V~~~l 108 (814)
T TIGR00596 32 ITGILVLRADRIIESS-QEAFILRLYRQKNKTGFIKAFSDNPE--AFTMGFSPLETKMRNLFLRHVYLWPRFHVEVASSL 108 (814)
T ss_pred ccEEEEeecccccccc-cHHHHHHHHHHhCCCcceEEecCCCc--ccccchHHHHHHHHHhCcCeEEEeCCCchHHHHHh
Confidence 4579999999997643 3333334333332 2223332 2335789999999999888853210 0111112
Q ss_pred cCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002077 583 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAG 622 (972)
Q Consensus 583 ~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g 622 (972)
+=-+..+..+.|+|++.-+++...+..-....+.++...+
T Consensus 109 ~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l~eLkr~n 148 (814)
T TIGR00596 109 EKHKAEVIELHVSLTDSMSQIQSAILECLNKCIAELKRKN 148 (814)
T ss_pred ccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2111356778999999999999888777766666654433
No 124
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.39 E-value=0.00011 Score=89.87 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=101.4
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.++++.+.+..+.|. -|||.+.....-+.|...|.+.||+...|..
T Consensus 408 ~~~K~~Aii~ei~~~~~~gq-----------------------------PVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQ-----------------------------PILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 35799999999998888777 8999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCC--------EEEEecCCCCCChHHHHhHhhcccCCcccEEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAAS--------HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~--------~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 921 (972)
... +|++.|-. +.+ .+--+.++|..+|.|-++.-.. |||..+.+=|-..+.|..||++|.|..-....
T Consensus 459 k~~--e~EA~IIa-~AG-~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 459 KQN--AREAEIIA-KAG-QKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred cch--hhHHHHHH-hCC-CCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 743 33333332 223 3344456778999998876433 99999999999999999999999999776444
Q ss_pred EEEecCCCHHHHHHHHH
Q 002077 922 TRLTIRDTVEDRILKLQ 938 (972)
Q Consensus 922 ~rli~~dTIEe~Il~lq 938 (972)
|- |+|+.++++-
T Consensus 535 ~l-----SLeD~L~r~f 546 (925)
T PRK12903 535 FI-----SLDDQLFRRF 546 (925)
T ss_pred EE-----ecchHHHHHh
Confidence 32 5566665443
No 125
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.34 E-value=2.7e-06 Score=92.90 Aligned_cols=112 Identities=23% Similarity=0.201 Sum_probs=72.3
Q ss_pred ccCchhHHHHHHHHHHhhhcCC---CccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCC
Q 002077 273 VNLLKHQKIALAWMLQKETRSL---HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNG 349 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~---~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 349 (972)
..|-.-|+++|.+..++....+ ...|-+|+|.+|+||--|+.++|......
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------------------------- 89 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------------------------- 89 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------------------------
Confidence 3478899999999987665322 24677999999999999999999864432
Q ss_pred CCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhh
Q 002077 350 NAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (972)
Q Consensus 350 ~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~ 429 (972)
+..++.-|-+...|..-=++.+..--.. .+.+.....-++. +...
T Consensus 90 --------------------------------Gr~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~~-~~~~ 134 (303)
T PF13872_consen 90 --------------------------------GRKRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKYG-DIIR 134 (303)
T ss_pred --------------------------------CCCceEEEECChhhhhHHHHHHHHhCCC--cccceechhhccC-cCCC
Confidence 2234566666677776655666653211 3333333222211 1111
Q ss_pred hcCCCEEEEchhhhhcc
Q 002077 430 LAKYDVVLTTYSIVTNE 446 (972)
Q Consensus 430 l~~~DVVItTY~~l~~e 446 (972)
.+.+|+.+||+++..+
T Consensus 135 -~~~GvlF~TYs~L~~~ 150 (303)
T PF13872_consen 135 -LKEGVLFSTYSTLISE 150 (303)
T ss_pred -CCCCccchhHHHHHhH
Confidence 2568999999999875
No 126
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.33 E-value=1.8e-06 Score=87.39 Aligned_cols=104 Identities=20% Similarity=0.271 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCcccc
Q 002077 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKV 356 (972)
Q Consensus 277 pyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 356 (972)
|+|.+++.-+.+. +.-++.-.+|.|||..++..++.....
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~~~--------------------------------- 41 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRLQE--------------------------------- 41 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhhcc---------------------------------
Confidence 7999999888722 125899999999999988666532221
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-C-hhhh-cC
Q 002077 357 KETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-D-PVEL-AK 432 (972)
Q Consensus 357 k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~-~~~l-~~ 432 (972)
.....+||+||. .|+.|-.+++.+++.. ..+++..++|..... + ...+ ..
T Consensus 42 -------------------------~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (169)
T PF00270_consen 42 -------------------------GKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSNQ 95 (169)
T ss_dssp -------------------------TSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHTT
T ss_pred -------------------------CCCceEEEEeecccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 111359999995 5899999999998875 357788887765422 1 2233 46
Q ss_pred CCEEEEchhhhhcc
Q 002077 433 YDVVLTTYSIVTNE 446 (972)
Q Consensus 433 ~DVVItTY~~l~~e 446 (972)
.+|+|+|++.+...
T Consensus 96 ~~ilv~T~~~l~~~ 109 (169)
T PF00270_consen 96 ADILVTTPEQLLDL 109 (169)
T ss_dssp SSEEEEEHHHHHHH
T ss_pred ccccccCcchhhcc
Confidence 99999999998753
No 127
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.29 E-value=1.4e-06 Score=94.83 Aligned_cols=93 Identities=23% Similarity=0.260 Sum_probs=78.0
Q ss_pred HHHHhhhcCCCeeEEEEecCccccccCCCCC----C----EEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCC
Q 002077 858 RAVKDFNTDREITVMLMSLKAGNLGLNMVAA----S----HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 858 ~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A----~----~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dT 929 (972)
...+.|+++ +..|+|+| .|||+|+.|++- | +.|.++++|+.....|-+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g-~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCC-CceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 567789977 78899998 999999999962 2 3478999999999999999999999999866666777778
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 002077 930 VEDRILKLQDDKRKMVASAFGED 952 (972)
Q Consensus 930 IEe~Il~lq~~K~~li~~a~g~~ 952 (972)
.|.|......+|.+-..+....+
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCc
Confidence 99999999999998766655433
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.26 E-value=4e-05 Score=94.55 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=100.4
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.++++.+.+..+.|. -|||-+.....-+.|...|.+.||++..|..
T Consensus 431 ~~eK~~Ai~~ei~~~~~~Gr-----------------------------PVLVGT~SVe~SE~ls~~L~~~gi~h~VLNA 481 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGR-----------------------------PVLVGTATIETSEHMSNLLKKEGIEHKVLNA 481 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCCHHHHHHHHHHHHHcCCcHHHhcc
Confidence 35799999999999988887 8999999999999999999999999988887
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC-------------------------------------CCCEEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV-------------------------------------AASHVI 892 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt-------------------------------------~A~~VI 892 (972)
... ++-.++|.+= + ...-+-++|.-+|.|-++. ..=|||
T Consensus 482 k~~-~~EA~IIa~A--G-~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVI 557 (913)
T PRK13103 482 KYH-EKEAEIIAQA--G-RPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVI 557 (913)
T ss_pred ccc-hhHHHHHHcC--C-CCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEE
Confidence 643 3334455532 2 2233355668888997764 235999
Q ss_pred EecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHH
Q 002077 893 LLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938 (972)
Q Consensus 893 ~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq 938 (972)
.-+.+=|-..+.|..||++|.|..-....|- |.|+.++++-
T Consensus 558 gTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SlED~Lmr~f 598 (913)
T PRK13103 558 ASERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDSLMRIF 598 (913)
T ss_pred eeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHHhh
Confidence 9999999999999999999999977644432 4455555443
No 129
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.25 E-value=0.00069 Score=86.39 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=70.7
Q ss_pred eEEEEecchHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC--CEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA--SHVI 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~----~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A--~~VI 892 (972)
++|||.....+++.+...|.. .++.. +..... ..|.+++++|+.+ +..||| .+....+|+++..- ..||
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~-~~~iLl-gt~sf~EGVD~~g~~l~~vi 750 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNG-EKAILL-GTSSFWEGVDFPGNGLVCLV 750 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhC-CCeEEE-EcceeecccccCCCceEEEE
Confidence 899999999999999999875 34443 333332 5799999999975 445665 45999999999875 4566
Q ss_pred EecCCC-CCC-----------------------------hHHHHhHhhcccCCcccEE
Q 002077 893 LLDLWW-NPT-----------------------------TEDQAVDRAHRIGQTRPVT 920 (972)
Q Consensus 893 ~~Dp~W-Np~-----------------------------~e~QAigRi~RiGQ~k~V~ 920 (972)
+.-+|+ +|. ...|++||+.|-.+.+-|.
T Consensus 751 I~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v 808 (850)
T TIGR01407 751 IPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSI 808 (850)
T ss_pred EeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEE
Confidence 666554 332 3459999999998877653
No 130
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.25 E-value=0.0003 Score=86.35 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=62.2
Q ss_pred eCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCC----------hHHHHhHhhcccCCcc
Q 002077 848 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPT----------TEDQAVDRAHRIGQTR 917 (972)
Q Consensus 848 dGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~----------~e~QAigRi~RiGQ~k 917 (972)
+.+|....|+-+-+.|..+ .++||. +|...+-|+||.+-..+|-=.+.|+.. ...|-+||++|.+=..
T Consensus 403 hAGm~r~DR~l~E~~F~~G-~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~ 480 (1230)
T KOG0952|consen 403 HAGMLRSDRQLVEKEFKEG-HIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDS 480 (1230)
T ss_pred ccccchhhHHHHHHHHhcC-CceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCC
Confidence 4567788999999999976 777765 558999999999877777666667766 3679999999987655
Q ss_pred cEEEEEEecCCCHH
Q 002077 918 PVTVTRLTIRDTVE 931 (972)
Q Consensus 918 ~V~V~rli~~dTIE 931 (972)
.-..+.++..+.++
T Consensus 481 ~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 481 SGEGIIITTRDKLD 494 (1230)
T ss_pred CceEEEEecccHHH
Confidence 55555566665443
No 131
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.23 E-value=5.5e-05 Score=92.55 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=60.5
Q ss_pred eEEEEecc---hHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc---cccccCCCC-CCEE
Q 002077 819 KSIVFSQW---TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA---GNLGLNMVA-ASHV 891 (972)
Q Consensus 819 KvIVFSqf---t~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka---gg~GLNLt~-A~~V 891 (972)
-.|||.+- ...++.|...|+.+||+...+... +.+.++.|..+ ++.||+....- .=.||+|.. ..++
T Consensus 337 GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~G-eidvLVGvAsyYG~lVRGlDLP~rirYa 410 (1187)
T COG1110 337 GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEG-EVDVLVGVASYYGVLVRGLDLPHRIRYA 410 (1187)
T ss_pred CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccC-ceeEEEEecccccceeecCCchhheeEE
Confidence 56899988 888999999999999998887663 36889999976 88888866443 446999986 5899
Q ss_pred EEecCC
Q 002077 892 ILLDLW 897 (972)
Q Consensus 892 I~~Dp~ 897 (972)
||+..|
T Consensus 411 IF~GvP 416 (1187)
T COG1110 411 VFYGVP 416 (1187)
T ss_pred EEecCC
Confidence 999988
No 132
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=4e-06 Score=92.69 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=96.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
..+||+.-..-++.|...|..+++....++|.|.+.+|..++++|+.+ ..+||| ++...+.|++++..+-||.||+|=
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlI-ttdl~argidv~~~slvinydlP~ 342 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLI-TTDLLARGIDVQQVSLVVNYDLPA 342 (397)
T ss_pred cceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEe-eccccccccchhhcceeeeecccc
Confidence 789999999999999999999999999999999999999999999976 666666 558999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHH
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~ 936 (972)
|......++||.+|+|-+- .+..++++. |+++++
T Consensus 343 ~~~~yihR~gr~gr~grkg--~~in~v~~~--d~~~lk 376 (397)
T KOG0327|consen 343 RKENYIHRIGRAGRFGRKG--VAINFVTEE--DVRDLK 376 (397)
T ss_pred chhhhhhhcccccccCCCc--eeeeeehHh--hHHHHH
Confidence 9999999999999999654 233455554 344443
No 133
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.16 E-value=0.00014 Score=88.95 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=71.1
Q ss_pred HHHHHHHHhC--CCcEEEEeCCCCHHH--HHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC--C-CCC--
Q 002077 831 DLVENSLNQH--CIQYRRLDGTMSLPA--RDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW--W-NPT-- 901 (972)
Q Consensus 831 d~L~~~L~~~--gi~~~~ldGs~s~~~--R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~--W-Np~-- 901 (972)
+.+++.|... +.++.++|+.++..+ -+..+..|.++ +..|||.+ .-..-|+|+.+..-|.++|.| - +|.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-e~dILiGT-QmiaKG~~fp~vtLVgvl~aD~~L~~~DfR 571 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-EADILIGT-QMIAKGHDFPNVTLVGVLDADTGLGSPDFR 571 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-CCCeeecc-hhhhcCCCcccceEEEEEechhhhcCCCcc
Confidence 5566666665 778899999886544 45789999976 77776655 999999999999888776655 2 332
Q ss_pred -------hHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 902 -------TEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 902 -------~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
...|..||++|-+-.-.|.|-.+....
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 556999999999777777666665554
No 134
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.13 E-value=0.00015 Score=79.37 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=76.8
Q ss_pred eEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
-++||-.-..+++-+...|++. ......++... ..|.+.|+.|+++ ..++ |+++.....|+.+...+.+++=.-
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G-~~~l-LiTTTILERGVTfp~vdV~Vlgae 382 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDG-KITL-LITTTILERGVTFPNVDVFVLGAE 382 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcC-ceEE-EEEeehhhcccccccceEEEecCC
Confidence 8999999999999999999653 22234444443 6799999999975 5554 557799999999999998777544
Q ss_pred C--CCCChHHHHhHhhcccCCcc--cEEEEEE
Q 002077 897 W--WNPTTEDQAVDRAHRIGQTR--PVTVTRL 924 (972)
Q Consensus 897 ~--WNp~~e~QAigRi~RiGQ~k--~V~V~rl 924 (972)
. +..+...|--||++|---.- .|..+++
T Consensus 383 h~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 383 HRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred cccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 4 88899999999999965433 3544443
No 135
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.8e-06 Score=89.52 Aligned_cols=55 Identities=35% Similarity=0.843 Sum_probs=46.1
Q ss_pred ccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCC--CCCCCcccccccccccccc
Q 002077 681 TSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDD--NMCPAPRCKEQLGADVVFS 737 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~--~~cp~~~Cr~~l~~~~~~s 737 (972)
.+...|-||+|..++||+|.|||.||-.||.+|+.... ..|| .|+..+..+.|..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cP--VCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECP--VCKAEVSIDTVVP 101 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCC--ccccccccceEEe
Confidence 56789999999999999999999999999999997554 4666 6888877766543
No 136
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.03 E-value=3.4e-06 Score=86.03 Aligned_cols=52 Identities=33% Similarity=0.869 Sum_probs=42.4
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcC---------------CCCCCCCcccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG---------------DDNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~---------------~~~~cp~~~Cr~~l~~~~~ 735 (972)
+...|.||.+...+|+++.|||+||..||.+|+.. ....|| .|+..+....+
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CP--vCR~~Is~~~L 83 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCP--VCKSDVSEATL 83 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCC--CCCCcCChhcE
Confidence 46789999999999999999999999999998742 123566 79998876544
No 137
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.95 E-value=0.00044 Score=82.17 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=61.5
Q ss_pred HHhhhcCCCeeEEEEecCccccccCCCCCCEE--------EEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHH
Q 002077 860 VKDFNTDREITVMLMSLKAGNLGLNMVAASHV--------ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931 (972)
Q Consensus 860 I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~V--------I~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIE 931 (972)
-++|..+ +-.|-||| .|++.|+.||.-.+| |-++++|+...-.|-+||.||-.|-.......||.+=-=|
T Consensus 850 KqrFM~G-eK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMDG-EKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhccc-cceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 3567754 77788888 888899999984433 6799999999999999999999998765555566554556
Q ss_pred HHHHHHHHHHHH
Q 002077 932 DRILKLQDDKRK 943 (972)
Q Consensus 932 e~Il~lq~~K~~ 943 (972)
-|...+..++.+
T Consensus 928 rRFAS~VAKRLE 939 (1300)
T KOG1513|consen 928 RRFASIVAKRLE 939 (1300)
T ss_pred hHHHHHHHHHHH
Confidence 666555555444
No 138
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.88 E-value=5.4e-06 Score=70.10 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=39.6
Q ss_pred cccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 684 AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 684 ~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
..|++|.+.+.+||+++|||+||..||.+|+.. ...|| .|+..+..+
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP--~~~~~~~~~ 48 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDP--VTGQPLTHE 48 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCC--CCcCCCChh
Confidence 369999999999999999999999999999976 66788 466665443
No 139
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.86 E-value=7.2e-06 Score=62.53 Aligned_cols=37 Identities=43% Similarity=1.053 Sum_probs=31.7
Q ss_pred cccCCCCCCCc-ccccCCcchhhhhHhhhhcCCCCCCCC
Q 002077 686 CCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPA 723 (972)
Q Consensus 686 C~iC~d~~~~~-vit~CgH~fC~~Ci~~~~~~~~~~cp~ 723 (972)
|++|.+.+.+| +++.|||+||.+|+.+++.. ...||.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcC
Confidence 78999999999 68999999999999999988 678884
No 140
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.84 E-value=8.8e-06 Score=63.09 Aligned_cols=37 Identities=35% Similarity=0.818 Sum_probs=29.5
Q ss_pred cccCCCCCCCcccccCCcchhhhhHhhhhcCCCC---CCC
Q 002077 686 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDN---MCP 722 (972)
Q Consensus 686 C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~---~cp 722 (972)
|+||++.+.+||.+.|||.||..||..++..... .||
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP 40 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCP 40 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---S
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCc
Confidence 8999999999999999999999999999875433 466
No 141
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=9.4e-06 Score=80.60 Aligned_cols=49 Identities=35% Similarity=0.895 Sum_probs=37.5
Q ss_pred ccccccccCCCCCCC--cccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 681 TSSAICCVCSDPPED--SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~--~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
.....|+||++.... ||-|.|||+||.+||.+.+. ....||. |+..|..
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~--C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPT--CRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCC--cccccch
Confidence 356889999998764 56799999999999999875 3467885 5445544
No 142
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.6e-05 Score=84.76 Aligned_cols=50 Identities=28% Similarity=0.859 Sum_probs=42.5
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~ 734 (972)
....|.+|++...+|--|+|||+||-.||.+|.....+ || .||.......
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CP--lCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CP--LCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CC--cccccCCCcc
Confidence 46789999999999999999999999999999865444 77 7998776543
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.67 E-value=0.0042 Score=77.65 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|..++++.+.+..+.|. -|||-+.....-++|...|...||+.-.|..
T Consensus 610 ~~eK~~Aii~ei~~~~~~Gr-----------------------------PVLVGT~SVe~SE~lS~~L~~~gI~H~VLNA 660 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGR-----------------------------PVLVGTTSVEISELLSRMLKMRKIPHNVLNA 660 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCcHHHhhc
Confidence 35799999999999998887 8999999999999999999999999988877
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC--------CCCEEEEecCCCCCChHHHHhHhhcccCCcccEEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV--------AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt--------~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 921 (972)
... ++-.++|.+=-.. --+-++|.-+|.|-++. ..=|||.-+.+=+...+.|..||++|.|..-....
T Consensus 661 K~h-~~EAeIVA~AG~~---GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 661 KLH-QKEAEIVAEAGQP---GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred cch-hhHHHHHHhcCCC---CcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceE
Confidence 643 2333455443322 22355668888997765 34699999999999999999999999999776433
Q ss_pred EEEecCCCHHHHHHHHH
Q 002077 922 TRLTIRDTVEDRILKLQ 938 (972)
Q Consensus 922 ~rli~~dTIEe~Il~lq 938 (972)
|- |+|+.++++-
T Consensus 737 ~l-----SLEDdLmr~F 748 (1112)
T PRK12901 737 YV-----SLEDNLMRLF 748 (1112)
T ss_pred EE-----EcccHHHHhh
Confidence 32 5566665543
No 144
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.65 E-value=0.00022 Score=80.14 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=91.4
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEec----------------------
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL---------------------- 876 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSl---------------------- 876 (972)
|+|||.+-.+..-.|.-.|++-||+.+.+.|.++...|.-+|++||.+ -..++|.|-
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG-~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG-LYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-ceeEEEEccCccchhhhhccccccccccCCC
Confidence 999999999999999999999999999999999999999999999975 666666653
Q ss_pred --C-c---------cccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 877 --K-A---------GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 877 --k-a---------gg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
+ + .+.|++++..+.||++|.|-++.....|+||..|-|.+-.+- -|++..
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gtal--Sfv~P~ 410 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTAL--SFVSPK 410 (569)
T ss_pred CccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceE--EEecch
Confidence 0 1 257999999999999999999999999999999988766543 344443
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.61 E-value=0.0061 Score=75.49 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=63.0
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.++++.+.+..+.|. -|||-+.....-+.|...|.+.||++..|..
T Consensus 406 ~~~K~~AI~~ei~~~~~~gr-----------------------------PVLIgT~SIe~SE~ls~~L~~~gi~h~vLNA 456 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGR-----------------------------PILIGTTTIEKSELLSQLLKEYRLPHQLLNA 456 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEeeCCHHHHHHHHHHHHHcCCccceeeC
Confidence 34699999999988888887 8999999999999999999999999999998
Q ss_pred CC-CHHHHHHHHHhhhcCCCeeEEEEecCccccccC
Q 002077 850 TM-SLPARDRAVKDFNTDREITVMLMSLKAGNLGLN 884 (972)
Q Consensus 850 s~-s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLN 884 (972)
.. ..++-.++|.+=- ..--+-++|.-+|.|-+
T Consensus 457 k~~~~~~EA~IIA~AG---~~G~VTIATNMAGRGTD 489 (870)
T CHL00122 457 KPENVRRESEIVAQAG---RKGSITIATNMAGRGTD 489 (870)
T ss_pred CCccchhHHHHHHhcC---CCCcEEEeccccCCCcC
Confidence 73 3344445665533 22233456677777733
No 146
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.61 E-value=0.00019 Score=80.05 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=82.6
Q ss_pred ceEEEEecchHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEe
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQH---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 894 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~---gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~ 894 (972)
.|+||||.-..-.|-|++.+++. .+.++.++|...+.+|.+.++.|+.. +++. ||.+++++.||+++..-.+|.+
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkf-lictdvaargldi~g~p~~inv 583 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKF-LICTDVAARGLDITGLPFMINV 583 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEE-EEEehhhhccccccCCceEEEE
Confidence 49999999999999999999987 35788999999999999999999975 5654 5556999999999999999999
Q ss_pred cCCCCCChHHHHhHhhccc
Q 002077 895 DLWWNPTTEDQAVDRAHRI 913 (972)
Q Consensus 895 Dp~WNp~~e~QAigRi~Ri 913 (972)
.++-.......||||++|.
T Consensus 584 tlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 584 TLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred ecCcccchhhhhhhccchh
Confidence 9999888888988887763
No 147
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=3.9e-05 Score=87.76 Aligned_cols=51 Identities=31% Similarity=0.800 Sum_probs=43.1
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCC--CCCCCCcccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD--DNMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~--~~~cp~~~Cr~~l~~~ 733 (972)
...|+||+.++..|+.|.|||+||..||-+|+... ..-|-||.|+..+...
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 67899999999999999999999999999998643 4455566899887653
No 148
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3.6e-05 Score=92.21 Aligned_cols=50 Identities=36% Similarity=0.849 Sum_probs=43.5
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~ 734 (972)
.-.|+.|.+.+-+.||+.|||+||++|+...+....-.|| .|..+++.+.
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP--~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCP--KCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCC--CCCCCCCccc
Confidence 4569999999999999999999999999999999999999 5666665543
No 149
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.46 E-value=0.0034 Score=76.81 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=67.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC--CEEEEe-c
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA--SHVILL-D 895 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A--~~VI~~-D 895 (972)
+|-|||.-..+.++++......+..+..++|..+..+ ++.+ .+.+|++-+ .+..+|+++-.. +.|+.| .
T Consensus 284 nIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~VviYT-~~itvG~Sf~~~HF~~~f~yvk 355 (824)
T PF02399_consen 284 NICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDVVIYT-PVITVGLSFEEKHFDSMFAYVK 355 (824)
T ss_pred cEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeEEEEe-ceEEEEeccchhhceEEEEEec
Confidence 9999999999999999999999999999988765542 3333 367888877 677789998643 556555 2
Q ss_pred C-CCCCCh--HHHHhHhhcccCCcc
Q 002077 896 L-WWNPTT--EDQAVDRAHRIGQTR 917 (972)
Q Consensus 896 p-~WNp~~--e~QAigRi~RiGQ~k 917 (972)
| .--|.. ..|.+||+-.++.++
T Consensus 356 ~~~~gpd~~s~~Q~lgRvR~l~~~e 380 (824)
T PF02399_consen 356 PMSYGPDMVSVYQMLGRVRSLLDNE 380 (824)
T ss_pred CCCCCCcHHHHHHHHHHHHhhccCe
Confidence 2 233443 589999998887544
No 150
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.43 E-value=0.00047 Score=79.60 Aligned_cols=106 Identities=25% Similarity=0.316 Sum_probs=82.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHhhhcC-CCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQ-YRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~-~~~ldGs~s~~~R~~~I~~F~~~-~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
=|+-||.-. +=.+...++++|.. .+.|.|+.+++.|.+.-..||+. .++.||+.| +|.|-||||. ..+|||+++
T Consensus 360 CvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF~sl 435 (700)
T KOG0953|consen 360 CVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIFYSL 435 (700)
T ss_pred eEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEEeec
Confidence 677787633 23356677788776 99999999999999999999973 488888887 9999999995 578898887
Q ss_pred C-CC--------CChHHHHhHhhcccCCccc-EEEEEEecCC
Q 002077 897 W-WN--------PTTEDQAVDRAHRIGQTRP-VTVTRLTIRD 928 (972)
Q Consensus 897 ~-WN--------p~~e~QAigRi~RiGQ~k~-V~V~rli~~d 928 (972)
. +| -+...|-.||++|.|.+-+ -.|+.|..+|
T Consensus 436 ~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 436 IKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 6 22 2245699999999998766 5677676655
No 151
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.42 E-value=6.3e-05 Score=85.79 Aligned_cols=49 Identities=29% Similarity=0.704 Sum_probs=41.0
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|.+|.+.+..|++++|||.||..||..++... ..|| .|+..+...
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP--~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCP--LCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCC--CCCCccccc
Confidence 456899999999999999999999999999998753 4787 677766543
No 152
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.41 E-value=8.1e-05 Score=57.28 Aligned_cols=37 Identities=38% Similarity=1.016 Sum_probs=33.1
Q ss_pred cccCCCCCCCcc-cccCCcchhhhhHhhhhc-CCCCCCC
Q 002077 686 CCVCSDPPEDSV-VTMCGHVFCYQCASEYIT-GDDNMCP 722 (972)
Q Consensus 686 C~iC~d~~~~~v-it~CgH~fC~~Ci~~~~~-~~~~~cp 722 (972)
|++|.+.+..++ ++.|||.||..|+.+++. .....||
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP 39 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCP 39 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCC
Confidence 789999999998 899999999999999998 5556777
No 153
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.38 E-value=0.00011 Score=78.36 Aligned_cols=47 Identities=28% Similarity=0.822 Sum_probs=37.2
Q ss_pred cccccccCCCCCCC--------cccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPED--------SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~--------~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
...+|+||++.... ++++.|+|+||.+||.+|+. ....|| .||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCP--lCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCP--VCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCC--CCCCEee
Confidence 46789999997543 36789999999999999986 456888 6887654
No 154
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.37 E-value=0.0019 Score=67.92 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=41.9
Q ss_pred EEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcc
Q 002077 873 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 873 LiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k 917 (972)
|+++...|.|++....|.||.||.+-.+.....+.+|++|+|-+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 667899999999999999999999999999999999999999654
No 155
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.36 E-value=9.3e-05 Score=59.69 Aligned_cols=46 Identities=33% Similarity=0.925 Sum_probs=38.3
Q ss_pred ccccccCCCCCCCcccccCCcc-hhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
+..|.+|++.+.++++.+|||. ||..|+..++. ....|| .||..+.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP--~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCP--ICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBT--TTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCC--cCChhhc
Confidence 3579999999999999999999 99999999987 667888 5877653
No 156
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.32 E-value=0.0064 Score=67.06 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=87.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
.-||||-...-.+.+...|+.+||..-.++..+.+..|.-+-+.+-.+ ++.|++.+ -|-|.|++-.....|||-.++-
T Consensus 319 sgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiqvivat-vafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 319 SGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQVIVAT-VAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred cceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceEEEEEE-eeecccCCCCCeeEEEecccch
Confidence 456777766778899999999999999999999999998888888765 88888766 7889999999999999999987
Q ss_pred CCChHHH-------------------------------------------HhHhhcccCCcccEEEEEE
Q 002077 899 NPTTEDQ-------------------------------------------AVDRAHRIGQTRPVTVTRL 924 (972)
Q Consensus 899 Np~~e~Q-------------------------------------------AigRi~RiGQ~k~V~V~rl 924 (972)
+-...-| --||++|-|++-....|+=
T Consensus 397 sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 397 SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEec
Confidence 7766677 4589999999998666653
No 157
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.32 E-value=0.014 Score=73.23 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=55.2
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEE----EecCC---C---CCChHHHHhHhhcc
Q 002077 843 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI----LLDLW---W---NPTTEDQAVDRAHR 912 (972)
Q Consensus 843 ~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI----~~Dp~---W---Np~~e~QAigRi~R 912 (972)
.|..-+..|+..+|+..-+-|.++ .+.||+ ||+..+-|+||.+-..+| .|||- | .|-...|..||++|
T Consensus 609 gfaIHhAGl~R~dR~~~EdLf~~g-~iqvlv-statlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 609 GFAIHHAGLNRKDRELVEDLFADG-HIQVLV-STATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred cceeeccCCCcchHHHHHHHHhcC-ceeEEE-eehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 346677889999999888888865 777766 779999999999765555 46664 4 44577899999999
Q ss_pred cCC
Q 002077 913 IGQ 915 (972)
Q Consensus 913 iGQ 915 (972)
.+-
T Consensus 687 p~~ 689 (1674)
T KOG0951|consen 687 PQY 689 (1674)
T ss_pred Ccc
Confidence 763
No 158
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.30 E-value=7.8e-05 Score=57.97 Aligned_cols=30 Identities=33% Similarity=0.862 Sum_probs=20.5
Q ss_pred cccCCCCCCC----cccccCCcchhhhhHhhhhcC
Q 002077 686 CCVCSDPPED----SVVTMCGHVFCYQCASEYITG 716 (972)
Q Consensus 686 C~iC~d~~~~----~vit~CgH~fC~~Ci~~~~~~ 716 (972)
|+||.+ ..+ |++++|||+||.+|+..+...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 788888 655 899999999999999998864
No 159
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.29 E-value=0.00052 Score=86.41 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=95.5
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.-.||||....+.+.+...|...|+....|++.|+..+|+.+-+.|..+ +++|+.++ =|-|-|+|-.+..-||||..+
T Consensus 486 ~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~VivAT-VAFGMGIdK~DVR~ViH~~lP 563 (941)
T KOG0351|consen 486 QSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KIRVIVAT-VAFGMGIDKPDVRFVIHYSLP 563 (941)
T ss_pred CCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CCeEEEEE-eeccCCCCCCceeEEEECCCc
Confidence 3789999999999999999999999999999999999999999999987 67777655 889999999999999999999
Q ss_pred CCCChHHHHhHhhcccCCcccEEEEE
Q 002077 898 WNPTTEDQAVDRAHRIGQTRPVTVTR 923 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~k~V~V~r 923 (972)
=+-...-|-+||++|-|+......|+
T Consensus 564 ks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 564 KSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred hhHHHHHHhccccCcCCCcceeEEec
Confidence 99999999999999999988855543
No 160
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.29 E-value=0.037 Score=68.80 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|+.++++.+.+..+.|. -|||-+.....-+.|...|.+.||++..|...
T Consensus 422 ~~K~~Ai~~ei~~~~~~Gr-----------------------------PVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk 472 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGR-----------------------------PVLVGTTSVEKSELLSALLQEQGIPHNLLNAK 472 (939)
T ss_pred HHHHHHHHHHHHHHHhCCC-----------------------------CEEEeeCCHHHHHHHHHHHHHcCCchheeeCC
Confidence 5799999999999888887 89999999999999999999999999999987
Q ss_pred -CCHHHHHHHHHhh
Q 002077 851 -MSLPARDRAVKDF 863 (972)
Q Consensus 851 -~s~~~R~~~I~~F 863 (972)
...++-.++|.+=
T Consensus 473 ~~~~~~EA~IIa~A 486 (939)
T PRK12902 473 PENVEREAEIVAQA 486 (939)
T ss_pred CcchHhHHHHHHhc
Confidence 3334445566653
No 161
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=97.19 E-value=0.012 Score=72.20 Aligned_cols=74 Identities=23% Similarity=0.194 Sum_probs=49.3
Q ss_pred EeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEe----c----CCCCCChHHHHhHhhcccCCccc
Q 002077 847 LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL----D----LWWNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 847 ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~----D----p~WNp~~e~QAigRi~RiGQ~k~ 918 (972)
-+|+.=+--++-+---|+.+ =++||+ +|...+-|+|+.+-+.||-= | -.-+|.-..|..|||+|-|=...
T Consensus 636 HH~GlLPivKE~VE~LFqrG-lVKVLF-ATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~t 713 (1248)
T KOG0947|consen 636 HHGGLLPIVKEVVELLFQRG-LVKVLF-ATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDET 713 (1248)
T ss_pred hcccchHHHHHHHHHHHhcC-ceEEEe-ehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcC
Confidence 34554333333333456654 677766 55888999999998888721 1 12368899999999999997665
Q ss_pred EEEE
Q 002077 919 VTVT 922 (972)
Q Consensus 919 V~V~ 922 (972)
=+|.
T Consensus 714 GTVi 717 (1248)
T KOG0947|consen 714 GTVI 717 (1248)
T ss_pred ceEE
Confidence 4443
No 162
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.15 E-value=0.00053 Score=76.87 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=102.2
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|..+|+.++.....+ .+.|||+.-...++++...|+..|+....+.|
T Consensus 244 ~a~K~aaLl~il~~~~~~------------------------------~~t~vf~~tk~hve~~~~ll~~~g~~~s~iys 293 (529)
T KOG0337|consen 244 KAEKEAALLSILGGRIKD------------------------------KQTIVFVATKHHVEYVRGLLRDFGGEGSDIYS 293 (529)
T ss_pred cHHHHHHHHHHHhccccc------------------------------cceeEEecccchHHHHHHHHHhcCCCcccccc
Confidence 457999999999887652 27899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCc
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT 916 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~ 916 (972)
++.+..|..-+.+|... ...+ |++++.++.|++..--+.||.||.+=.+.....|.||+.|-|.+
T Consensus 294 slD~~aRk~~~~~F~~~-k~~~-lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt 358 (529)
T KOG0337|consen 294 SLDQEARKINGRDFRGR-KTSI-LVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT 358 (529)
T ss_pred ccChHhhhhccccccCC-ccce-EEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc
Confidence 99999999999999964 4444 55569999999999999999999999999999999999999865
No 163
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.11 E-value=0.00035 Score=52.05 Aligned_cols=38 Identities=37% Similarity=1.000 Sum_probs=32.9
Q ss_pred cccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCC
Q 002077 686 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPA 723 (972)
Q Consensus 686 C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~ 723 (972)
|++|.+....++++.|||.||..|+..|+......||.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCC
Confidence 78999998889999999999999999998855567773
No 164
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.10 E-value=0.00016 Score=56.69 Aligned_cols=38 Identities=37% Similarity=0.820 Sum_probs=30.7
Q ss_pred ccccCCCCC---CCcccccCCcchhhhhHhhhhcCCCCCCCC
Q 002077 685 ICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGDDNMCPA 723 (972)
Q Consensus 685 ~C~iC~d~~---~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~ 723 (972)
+|+||++.+ +..+.+.|||+||.+|+.+|+... ..||.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~ 42 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPV 42 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TT
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCc
Confidence 699999876 346778899999999999999774 58884
No 165
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.06 E-value=0.00026 Score=74.94 Aligned_cols=44 Identities=32% Similarity=0.804 Sum_probs=37.5
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQ 729 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~ 729 (972)
.-.|.||.+.+..|++|+|||.||.=||..++ +..+.||+ |+..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL-~~qp~CP~--Cr~~ 68 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHL-GTQPFCPV--CRED 68 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHh-cCCCCCcc--cccc
Confidence 45699999999999999999999999999998 45678884 5544
No 166
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.05 E-value=0.00024 Score=62.22 Aligned_cols=49 Identities=14% Similarity=0.345 Sum_probs=37.9
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
...|+||.+.+.+||+++|||+|+..||..|+......||. |+..+...
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~--t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPF--TRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TT--T-SB-SGG
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCC--CCCcCCcc
Confidence 45799999999999999999999999999999887889994 55555543
No 167
>PHA02926 zinc finger-like protein; Provisional
Probab=97.03 E-value=0.00042 Score=71.62 Aligned_cols=48 Identities=21% Similarity=0.665 Sum_probs=36.5
Q ss_pred cccccccCCCCCC---------CcccccCCcchhhhhHhhhhcCC-----CCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPE---------DSVVTMCGHVFCYQCASEYITGD-----DNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~---------~~vit~CgH~fC~~Ci~~~~~~~-----~~~cp~~~Cr~~l~ 731 (972)
...+|+||++..- ..++..|+|.||..||..|.... ...|| .||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCP--iCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCP--ICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCC--CCcceee
Confidence 4688999998641 35788999999999999998643 23588 6776543
No 168
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.99 E-value=0.00048 Score=53.25 Aligned_cols=42 Identities=36% Similarity=0.969 Sum_probs=33.5
Q ss_pred ccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCccccc
Q 002077 685 ICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKE 728 (972)
Q Consensus 685 ~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~ 728 (972)
.|.+|.+.+..++.. .|||.||..|+..|+......|| .|+.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp--~C~~ 43 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCP--LCRT 43 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCC--CCCC
Confidence 489999988666555 59999999999999887667788 4554
No 169
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00038 Score=73.68 Aligned_cols=48 Identities=31% Similarity=0.747 Sum_probs=39.5
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCC-CCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD-DNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~-~~~cp~~~Cr~~l~ 731 (972)
.+..|.+|++.++.|+-++|||+||..||-..++.. -..|| .||....
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~Cp--lCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCP--LCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCc--hhhhhcc
Confidence 467899999999999999999999999999955544 44599 6776543
No 170
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.93 E-value=0.00065 Score=53.25 Aligned_cols=38 Identities=32% Similarity=0.842 Sum_probs=31.2
Q ss_pred ccccCCCCC---CCcccccCCcchhhhhHhhhhcCCCCCCCC
Q 002077 685 ICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGDDNMCPA 723 (972)
Q Consensus 685 ~C~iC~d~~---~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~ 723 (972)
.|.+|.... ..++++.|||+||..|+.... .....||.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~ 41 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPI 41 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcC
Confidence 478888776 358999999999999999987 55668884
No 171
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00082 Score=72.22 Aligned_cols=57 Identities=23% Similarity=0.571 Sum_probs=50.6
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTT 740 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~ 740 (972)
...+|.||...+..||...|+|.||+-||....+.+-..|+ .||.++..+..+...-
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~Ca--vCR~pids~i~~~psl 62 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCA--VCRFPIDSTIDFEPSL 62 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCc--eecCCCCcchhcchhh
Confidence 35789999999999999999999999999999998888899 7999999887766543
No 172
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=96.65 E-value=0.0038 Score=70.17 Aligned_cols=102 Identities=18% Similarity=0.122 Sum_probs=91.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
=-||||.-....+.+...|...||+...++..+...+|..+-+.+.++ ++.|+..+ -.-|-|++=....-|||.+++=
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~-~~PvI~AT-~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN-EIPVIAAT-VSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-CCCEEEEE-eccccccCCcceeEEEecCchh
Confidence 348999999999999999999999999999999999999999999976 66666654 7888999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEE
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
|-+..-|--||++|-|-..=...|
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred hhHHHHHhccccccCCCccceeee
Confidence 999999999999999976655554
No 173
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.57 E-value=0.00049 Score=74.46 Aligned_cols=45 Identities=24% Similarity=0.682 Sum_probs=37.9
Q ss_pred cccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 684 AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 684 ~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
-.|.||.+-+..|++|+|+|.||.=||..++. ..++|| .|.....
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP--~C~~~~~ 68 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCP--TCCVTVT 68 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCC--ceecccc
Confidence 45999999999999999999999999999985 457888 4655443
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.51 E-value=0.012 Score=74.04 Aligned_cols=71 Identities=18% Similarity=0.062 Sum_probs=46.9
Q ss_pred eeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccC-----C---cccEEEEEEecCCCHHHHHHHHHHH
Q 002077 869 ITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG-----Q---TRPVTVTRLTIRDTVEDRILKLQDD 940 (972)
Q Consensus 869 ~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiG-----Q---~k~V~V~rli~~dTIEe~Il~lq~~ 940 (972)
+.-+|+|-.|+.+|-+-..+=.+.-+...-+...-.|-+||.-|+- . .+.+ +-.+++..|-++-.-.||..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~LQ~E 579 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKLVGE 579 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHHHHH
Confidence 5556777777777777777766666666667777777777777752 2 1235 55556666777777666653
No 175
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.36 E-value=0.0029 Score=69.59 Aligned_cols=50 Identities=24% Similarity=0.675 Sum_probs=37.3
Q ss_pred ccccccCCCCC-CCc----ccccCCcchhhhhHhhhhcCCCCCCCCccccccccccc
Q 002077 683 SAICCVCSDPP-EDS----VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734 (972)
Q Consensus 683 ~~~C~iC~d~~-~~~----vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~ 734 (972)
...|++|.... ..| .+..|||.||..|+..++......|| .|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP--~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCP--ECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCC--CCCCccchhh
Confidence 35799998732 122 34489999999999999877666777 7888877654
No 176
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.34 E-value=0.0022 Score=70.73 Aligned_cols=56 Identities=25% Similarity=0.755 Sum_probs=45.5
Q ss_pred HHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCC-CCCCCCcccc
Q 002077 672 LIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD-DNMCPAPRCK 727 (972)
Q Consensus 672 ~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~-~~~cp~~~Cr 727 (972)
+.+|.-......+.|-||.+.-.+.-|.+|||.+|..|+..|...+ +..||.|+|.
T Consensus 358 QyeLYceMgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcE 414 (563)
T KOG1785|consen 358 QYELYCEMGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCE 414 (563)
T ss_pred HHHHHHHccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeE
Confidence 3445555555678899999999899999999999999999999766 7799976653
No 177
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.26 E-value=0.033 Score=68.02 Aligned_cols=79 Identities=9% Similarity=0.111 Sum_probs=51.4
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcE-EEEeCCCCHHHHHHHHHhhhcC--CCeeEEEEecCccccccCC----------
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQY-RRLDGTMSLPARDRAVKDFNTD--REITVMLMSLKAGNLGLNM---------- 885 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~-~~ldGs~s~~~R~~~I~~F~~~--~~~~VlLiSlkagg~GLNL---------- 885 (972)
-.+.|+.|..| ..+...|... +++ +.+-|.. ..|..++++|... .+..-+|+.+.+..+|+++
T Consensus 473 ~lvLfTS~~~~-~~~~~~l~~~-l~~~~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G 548 (636)
T TIGR03117 473 TLVLTTAFSHI-SAIGQLVELG-IPAEIVIQSEK--NRLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKD 548 (636)
T ss_pred EEEEechHHHH-HHHHHHHHhh-cCCCEEEeCCC--ccHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCC
Confidence 55667766654 4455556543 323 3455643 2567899999974 1223335566999999999
Q ss_pred CCCCEEEEecCCCCCC
Q 002077 886 VAASHVILLDLWWNPT 901 (972)
Q Consensus 886 t~A~~VI~~Dp~WNp~ 901 (972)
...+.||+.-+|+-|.
T Consensus 549 ~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 549 NLLTDLIITCAPFGLN 564 (636)
T ss_pred CcccEEEEEeCCCCcC
Confidence 2368999998888764
No 178
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0014 Score=52.39 Aligned_cols=47 Identities=34% Similarity=0.874 Sum_probs=41.9
Q ss_pred ccccccCCCCCCCcccccCCcc-hhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
+.+|.||.+.+.+.|+-.|||. +|++|-...+......|| .||.++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CP--iCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCP--ICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCc--chhhHHH
Confidence 4789999999999999999997 899999999888888999 6887764
No 179
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.25 E-value=0.18 Score=60.53 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=51.3
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCC-----HHHHHHHHHhhhcC--CCeeEEEEec--CccccccCCCC-
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS-----LPARDRAVKDFNTD--REITVMLMSL--KAGNLGLNMVA- 887 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s-----~~~R~~~I~~F~~~--~~~~VlLiSl--kagg~GLNLt~- 887 (972)
.-||+|-..-.+|..+.+.+++.||- .+|.|.-. .+.-..+++.|... .+.-.||++. .-.++|+|+.+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 47899988888899999999988763 22222211 11134667777752 1223445452 34569999997
Q ss_pred -CCEEEEecCCCC
Q 002077 888 -ASHVILLDLWWN 899 (972)
Q Consensus 888 -A~~VI~~Dp~WN 899 (972)
+..|+++-.|+-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 577887777763
No 180
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.19 E-value=0.0021 Score=53.35 Aligned_cols=46 Identities=33% Similarity=0.659 Sum_probs=32.2
Q ss_pred cccccccCCCCCCCcccc-cCCcchhhhhHhhhhc-CCCCCCCCcccc
Q 002077 682 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYIT-GDDNMCPAPRCK 727 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~-~~~~~cp~~~Cr 727 (972)
-...|++...++.+||.. .|||+|..+.|.+++. .....||...|.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 357899999999999996 8999999999999994 445699988773
No 181
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.19 E-value=0.0028 Score=52.96 Aligned_cols=43 Identities=30% Similarity=0.780 Sum_probs=23.0
Q ss_pred ccccccCCCCCCCcc-cccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 683 SAICCVCSDPPEDSV-VTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 683 ~~~C~iC~d~~~~~v-it~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
.-.|++|.+.+..|| ++.|.|+||..||.+.+.. .|| .|..+.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CP--vC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECP--VCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-S--SS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCC--CcCChH
Confidence 346999999999998 5799999999999987654 477 465543
No 182
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.19 E-value=0.035 Score=61.86 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=29.7
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
..||.|++-..-+.+.-.. ..-+|+--..|.|||+..|..++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred CCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHH
Confidence 4599999855544433321 233678889999999998877754
No 183
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.19 E-value=0.035 Score=61.86 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=29.7
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
..||.|++-..-+.+.-.. ..-+|+--..|.|||+..|..++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred CCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHH
Confidence 4599999855544433321 233678889999999998877754
No 184
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0034 Score=66.80 Aligned_cols=48 Identities=38% Similarity=0.875 Sum_probs=37.7
Q ss_pred ccccccccCCCCCCCccc-ccCCcchhhhhHhhhhc-CCCCCCCCccccccc
Q 002077 681 TSSAICCVCSDPPEDSVV-TMCGHVFCYQCASEYIT-GDDNMCPAPRCKEQL 730 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~~vi-t~CgH~fC~~Ci~~~~~-~~~~~cp~~~Cr~~l 730 (972)
.+..+|++|.++|..|.+ .+|||+||+-||..-.. ...-+|| .|.++.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp--~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCP--LCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccC--ccCCCC
Confidence 467899999999999855 56999999999998654 3345888 666554
No 185
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.02 E-value=0.019 Score=73.75 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=47.6
Q ss_pred HHHHHHHHhh-hcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCc-cc-EEEEEEe
Q 002077 854 PARDRAVKDF-NTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT-RP-VTVTRLT 925 (972)
Q Consensus 854 ~~R~~~I~~F-~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~-k~-V~V~rli 925 (972)
..+...+.+| ..+..+++||+. .-.=+|.+-+..++++ +|-+-=.-...||+.|+.|+=-. |+ -.|.-|+
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 3444555665 455578888887 5555788887766554 56666777888999999997544 44 5555555
No 186
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.93 E-value=0.051 Score=57.45 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=27.2
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccC-ceeecCCCChhHHHHHHHHHhh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLG-GILADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~G-GILADdmGLGKTiqaIali~~~ 320 (972)
+|-+.|+.|+..++.. .+ .++.-..|-|||-+..+++...
T Consensus 1 ~ln~~Q~~Ai~~~~~~-------~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 1 KLNESQREAIQSALSS-------NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp ---HHHHHHHHHHCTS-------SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC-------CCCEEEECCCCCChHHHHHHHHHHh
Confidence 3778999999877733 22 5788889999997776666643
No 187
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.84 E-value=0.039 Score=54.46 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=28.1
Q ss_pred CceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhhc
Q 002077 385 AGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445 (972)
Q Consensus 385 ~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~ 445 (972)
.++||+.|+-++- +|+.+.+. .+. .-|+...+.. ......-|-+++|.++..
T Consensus 34 ~rvLvL~PTRvva---~em~~aL~---~~~-~~~~t~~~~~--~~~g~~~i~vMc~at~~~ 85 (148)
T PF07652_consen 34 LRVLVLAPTRVVA---EEMYEALK---GLP-VRFHTNARMR--THFGSSIIDVMCHATYGH 85 (148)
T ss_dssp --EEEEESSHHHH---HHHHHHTT---TSS-EEEESTTSS------SSSSEEEEEHHHHHH
T ss_pred CeEEEecccHHHH---HHHHHHHh---cCC-cccCceeeec--cccCCCcccccccHHHHH
Confidence 4599999987653 44454443 222 2333332221 234556688899998865
No 188
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.0036 Score=68.84 Aligned_cols=48 Identities=29% Similarity=0.765 Sum_probs=40.6
Q ss_pred cccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
....|++|++.+.....+ .|+|-||.+||..-+....+.|| .||+.+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecp--tcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECP--TCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCc--hHHhhcc
Confidence 467899999988776666 59999999999999999999999 6877654
No 189
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.14 E-value=0.07 Score=63.39 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=61.4
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
+|-.-|..||.-.+++-- -||--..|.|||++..+++.....
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IVyhl~~------------------------------- 451 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIVYHLAR------------------------------- 451 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHHHHHHH-------------------------------
Confidence 477899999999995543 388889999999988776654322
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchh-HHHHHHHHHhhCCCCCCeEEEEEeCCCCC
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLIYHGGSRT 424 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sL-l~QW~~Ei~k~~~~~~~l~vlvy~G~~r~ 424 (972)
....+.||++|..+ ++|-..-|.+- .|+|+-....+|.
T Consensus 452 ----------------------------~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 452 ----------------------------QHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSRE 490 (935)
T ss_pred ----------------------------hcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhh
Confidence 23456999999775 89999999885 6898887766554
No 190
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.012 Score=65.12 Aligned_cols=43 Identities=28% Similarity=0.724 Sum_probs=37.3
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCK 727 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr 727 (972)
....|+||++.+..|++.+|||.||..|+..++. ....|| .|+
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp--~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCP--VCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCc--ccC
Confidence 4678999999999999999999999999999988 445777 566
No 191
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=94.35 E-value=0.13 Score=65.37 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=58.1
Q ss_pred EEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE----ec----CCCCCChHHHHhHhhcccCCcc
Q 002077 846 RLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----LD----LWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 846 ~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~----~D----p~WNp~~e~QAigRi~RiGQ~k 917 (972)
.-++.+=+.-|..+=.-|+.+ -++|++.+ ...+.|+|+.+=+.|+- +| -|-+|.-..|--||++|-|+..
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~G-LvkvvFaT-eT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQEG-LVKVVFAT-ETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred hhccccchHHHHHHHHHHhcc-ceeEEeeh-hhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 346777778888888889976 77777755 99999999998766652 22 2446788899999999999988
Q ss_pred cEEEEEE
Q 002077 918 PVTVTRL 924 (972)
Q Consensus 918 ~V~V~rl 924 (972)
.-+|...
T Consensus 527 ~G~vI~~ 533 (1041)
T COG4581 527 LGTVIVI 533 (1041)
T ss_pred cceEEEe
Confidence 7555444
No 192
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=93.95 E-value=0.034 Score=48.66 Aligned_cols=40 Identities=33% Similarity=0.928 Sum_probs=29.4
Q ss_pred ccccccCCCCCC------------Cc-ccccCCcchhhhhHhhhhcCCCCCCCC
Q 002077 683 SAICCVCSDPPE------------DS-VVTMCGHVFCYQCASEYITGDDNMCPA 723 (972)
Q Consensus 683 ~~~C~iC~d~~~------------~~-vit~CgH~fC~~Ci~~~~~~~~~~cp~ 723 (972)
...|.||++++. .+ +...|||.|-..||.+|+.... .||.
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~ 71 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPL 71 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TT
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCC
Confidence 445999998772 22 4457999999999999996544 8884
No 193
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=93.78 E-value=0.21 Score=51.00 Aligned_cols=98 Identities=22% Similarity=0.309 Sum_probs=62.4
Q ss_pred ceEEEEecchHHHHHHHHHHHhCC----CcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecC--ccccccCCCC--CC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHC----IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK--AGNLGLNMVA--AS 889 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~g----i~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlk--agg~GLNLt~--A~ 889 (972)
.++|||...-.+++.+...+...+ +.... .+ ...+.+++++|..+.+ .| |++.. ...+|+|+.. +.
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q~---~~~~~~~l~~~~~~~~-~i-l~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-QG---SKSRDELLEEFKRGEG-AI-LLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-ST---CCHHHHHHHHHCCSSS-EE-EEEETTSCCGSSS--ECESEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeee-cC---cchHHHHHHHHHhccC-eE-EEEEecccEEEeecCCCchhh
Confidence 499999999999999999998763 43222 22 4678899999998533 33 44445 7899999985 66
Q ss_pred EEEEecCCC-CCC-----------------------------hHHHHhHhhcccCCcccEEE
Q 002077 890 HVILLDLWW-NPT-----------------------------TEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 890 ~VI~~Dp~W-Np~-----------------------------~e~QAigRi~RiGQ~k~V~V 921 (972)
.||+.-+|+ +|. ...||+||+.|-.+.+-+.|
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 788888886 342 22389999998777555433
No 194
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.77 E-value=0.031 Score=59.78 Aligned_cols=40 Identities=30% Similarity=0.719 Sum_probs=36.2
Q ss_pred cccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCC
Q 002077 684 AICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPA 723 (972)
Q Consensus 684 ~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~ 723 (972)
-.|+.|..-+..|+-| +|+|.||.+||...+-..+..||.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~Cpn 315 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPN 315 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCC
Confidence 5699999999999999 799999999999998888899993
No 195
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.031 Score=60.26 Aligned_cols=46 Identities=26% Similarity=0.652 Sum_probs=38.8
Q ss_pred ccccccCCCCCC---CcccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 683 SAICCVCSDPPE---DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 683 ~~~C~iC~d~~~---~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
..+|.||+.... .-++++|.|.|=..|+.+|+-+-...|| .|++++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CP--vCrt~i 371 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCP--VCRTAI 371 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCC--ccCCCC
Confidence 478999987653 3588999999999999999998899999 577765
No 196
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.55 E-value=0.025 Score=57.26 Aligned_cols=39 Identities=36% Similarity=0.787 Sum_probs=31.4
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCC
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCP 722 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp 722 (972)
-..|.||....+.||+|.|||.||..|...-.. +...|-
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~ 234 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECG 234 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcce
Confidence 468999999999999999999999999876443 234454
No 197
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.38 E-value=0.5 Score=60.22 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=66.1
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCC--CCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~--A~~VI~~Dp 896 (972)
+++|+-..-.+++.+...|....+.. ..-|... .|.+++++|+.+ +-.|||.+ ..-.||+++.. +..||+.-+
T Consensus 649 ~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~-~~~vLlG~-~sFwEGVD~p~~~~~~viI~kL 723 (820)
T PRK07246 649 PILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRG-EQQILLGL-GSFWEGVDFVQADRMIEVITRL 723 (820)
T ss_pred CEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcC-CCeEEEec-chhhCCCCCCCCCeEEEEEecC
Confidence 78887777778888888887665544 5556432 366799999974 44566655 88999999963 555676664
Q ss_pred C-CCCC-----------------------------hHHHHhHhhcccCCcccE
Q 002077 897 W-WNPT-----------------------------TEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 897 ~-WNp~-----------------------------~e~QAigRi~RiGQ~k~V 919 (972)
| .+|. ...|++||+-|--.-+-|
T Consensus 724 PF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv 776 (820)
T PRK07246 724 PFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA 776 (820)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE
Confidence 4 4452 234899999997666654
No 198
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=93.12 E-value=0.8 Score=53.43 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=34.5
Q ss_pred CchhHHHHHHHHHHhhhcCCCccC-ceeecCCCChhHHHHHHHHHhhcccc
Q 002077 275 LLKHQKIALAWMLQKETRSLHCLG-GILADDQGLGKTISIIALIQMQRSLQ 324 (972)
Q Consensus 275 LrpyQk~al~wml~~e~~~~~~~G-GILADdmGLGKTiqaIali~~~~~~~ 324 (972)
.+|.| +.+|....+. +..+| |+|--.-|.|||+.-|+||...+...
T Consensus 17 iYPEQ---~~YM~elKrs-LDakGh~llEMPSGTGKTvsLLSli~aYq~~~ 63 (755)
T KOG1131|consen 17 IYPEQ---YEYMRELKRS-LDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHY 63 (755)
T ss_pred cCHHH---HHHHHHHHHh-hccCCcEEEECCCCCCcchHHHHHHHHHHHhC
Confidence 56777 5688766554 23334 79999999999999999999876553
No 199
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.04 Score=66.90 Aligned_cols=45 Identities=24% Similarity=0.647 Sum_probs=38.8
Q ss_pred ccccccccCCCCCCC-----cccccCCcchhhhhHhhhhcCCCCCCCCccc
Q 002077 681 TSSAICCVCSDPPED-----SVVTMCGHVFCYQCASEYITGDDNMCPAPRC 726 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~-----~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~C 726 (972)
.....|.||.+.+.. +-..+|||+||..|+..|+.. ...||.|+|
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~ 338 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRT 338 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchh
Confidence 457889999999887 788999999999999999976 778995444
No 200
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.88 E-value=0.27 Score=57.43 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=91.3
Q ss_pred cccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHh----CCC-
Q 002077 768 EYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQ----HCI- 842 (972)
Q Consensus 768 ~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~----~gi- 842 (972)
...++|+....+++.++...+- ++|-||....+.+++-...++ .+-
T Consensus 505 ~~~~~~i~E~s~~~~~~i~~~~-----------------------------R~IAFC~~R~~CEL~~~~~R~I~~ET~~~ 555 (1034)
T KOG4150|consen 505 SEKSSKVVEVSHLFAEMVQHGL-----------------------------RCIAFCPSRKLCELVLCLTREILAETAPH 555 (1034)
T ss_pred hhhhhHHHHHHHHHHHHHHcCC-----------------------------cEEEeccHHHHHHHHHHHHHHHHHHhhHH
Confidence 3467899999999998888766 999999999877766544332 211
Q ss_pred ---cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCC
Q 002077 843 ---QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQ 915 (972)
Q Consensus 843 ---~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ 915 (972)
.+..+.|.-+..+|.++-.+.-.+ . -.-++++.|...|+++-.-+.|+++--+.+-+...|-.||++|-..
T Consensus 556 LV~~i~SYRGGY~A~DRRKIE~~~F~G-~-L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 556 LVEAITSYRGGYIAEDRRKIESDLFGG-K-LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred HHHHHHhhcCccchhhHHHHHHHhhCC-e-eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 134567888888888877665543 2 2346688999999999999999999999999999999999998654
No 201
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=92.64 E-value=1.4 Score=55.11 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=63.8
Q ss_pred EEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC-----CCChHHHHhHhhcccCC-cc
Q 002077 844 YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-----NPTTEDQAVDRAHRIGQ-TR 917 (972)
Q Consensus 844 ~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W-----Np~~e~QAigRi~RiGQ-~k 917 (972)
+...+...+.++|.-+=..|+++ .++|+..+ ...+-|+||.+ .+||+=-|.. .-....|.+||++|.|= +.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~g-~i~vl~aT-STlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFREG-NIFVLVAT-STLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred ceecccccccchHHHHHHHHHhc-CeEEEEec-chhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 45566667778887777788875 67776655 45888999986 4555544443 33367799999999984 33
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002077 918 PVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQG 954 (972)
Q Consensus 918 ~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~ 954 (972)
.--| ||++..=..++.++...-......-++++..
T Consensus 602 Gdsi--LI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~ 636 (1008)
T KOG0950|consen 602 GDSI--LIIKSSEKKRVRELVNSPLKPLNSCLSNEVN 636 (1008)
T ss_pred cceE--EEeeccchhHHHHHHhccccccccccccccc
Confidence 2222 3444433444444444444444444444433
No 202
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.064 Score=61.69 Aligned_cols=48 Identities=40% Similarity=0.922 Sum_probs=39.9
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
+..+|.+|...+..||.++|||.||..||...++ ....|| .|+..+..
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp--~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECP--LCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCc--cccccccc
Confidence 5678999999999999999999999999888554 556777 58877654
No 203
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.075 Score=59.66 Aligned_cols=48 Identities=27% Similarity=0.740 Sum_probs=39.0
Q ss_pred cccccCCCCCCC---cccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 684 AICCVCSDPPED---SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 684 ~~C~iC~d~~~~---~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
..|.||+|.-+. -.+.+|.|.|=..||..|++..+..||. |+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPv--CK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPV--CKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCC--CCCcCCCC
Confidence 489999987653 4778999999999999999998889995 55555443
No 204
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.26 E-value=1 Score=44.65 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCC--CCEEEEecCCC-
Q 002077 829 MLDLVENSLNQHCI-------QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILLDLWW- 898 (972)
Q Consensus 829 ~ld~L~~~L~~~gi-------~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~--A~~VI~~Dp~W- 898 (972)
+++.+...+...++ ....+-| ....+..+++++|....+..|| +++....+|+|+.. +..||+.-.|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~iL-~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAIL-LATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEEE-EEccceecceecCCCCeeEEEEEecCCC
Confidence 45556666666554 2334444 3344678999999975333454 55566999999986 46677777554
Q ss_pred CCC
Q 002077 899 NPT 901 (972)
Q Consensus 899 Np~ 901 (972)
||.
T Consensus 81 ~~~ 83 (141)
T smart00492 81 YPD 83 (141)
T ss_pred CCC
Confidence 444
No 205
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=92.02 E-value=0.4 Score=52.63 Aligned_cols=57 Identities=25% Similarity=0.173 Sum_probs=36.3
Q ss_pred CceEEEcCchhH----HHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhhc
Q 002077 385 AGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445 (972)
Q Consensus 385 ~~tLIV~P~sLl----~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~ 445 (972)
++.=||+.+..| .+|...|-+++ .++|-+.............-..||+-+|-..+.-
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~L----Glsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~f 179 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFL----GLSVGIITSDMSSEERREAYAADIVYGTNSEFGF 179 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHT----T--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHH
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHh----hhccccCccccCHHHHHHHHhCcccccccchhhH
Confidence 457777876655 55999998888 5888777765443333445567888777666654
No 206
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=0.071 Score=58.38 Aligned_cols=53 Identities=26% Similarity=0.672 Sum_probs=42.5
Q ss_pred HhhcccccccccCCCCCCCc-ccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 677 SRLETSSAICCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 677 ~~le~~~~~C~iC~d~~~~~-vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
+.+......|++|.....+| |++.-|-|||+.|+-.|+. ..+.||+-+|....
T Consensus 294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV 347 (357)
T ss_pred ccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence 33456789999999887766 6667899999999999997 77899987776543
No 207
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=91.90 E-value=0.22 Score=52.51 Aligned_cols=40 Identities=28% Similarity=0.250 Sum_probs=27.5
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (972)
++-++|+.++.-++.... -++--..|-|||+.|++..+..
T Consensus 4 p~~~~Q~~~~~al~~~~~-------v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDL-------VIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp --SHHHHHHHHHHHH-SE-------EEEE--TTSSTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCe-------EEEECCCCCcHHHHHHHHHHHH
Confidence 355799999998883322 3667788999999999888743
No 208
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.072 Score=57.61 Aligned_cols=45 Identities=33% Similarity=0.638 Sum_probs=35.3
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
-..|.||......||+|.|+|.||..|....+.. ...|. .|..++
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~--vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCY--VCSQQT 285 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcce--eccccc
Confidence 3569999999999999999999999998876543 23455 566554
No 209
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.85 E-value=1.2 Score=57.80 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=68.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC--CEEEEe
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCI--QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA--SHVILL 894 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi--~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A--~~VI~~ 894 (972)
++|||-..-.++..+...|..... .+..+.-.++...|.+++++|+.. +-.|||. +....||+++... ..||+.
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~-~~~iLlG-~~sFwEGVD~pg~~l~~viI~ 831 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF-DKAILLG-TSSFWEGIDIPGDELSCLVIV 831 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-CCeEEEe-cCcccCccccCCCceEEEEEe
Confidence 677776667788888888875422 122333223334688999999974 3345554 5888899999874 788888
Q ss_pred cCCC-CCC-----------------------------hHHHHhHhhcccCCcccE
Q 002077 895 DLWW-NPT-----------------------------TEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 895 Dp~W-Np~-----------------------------~e~QAigRi~RiGQ~k~V 919 (972)
-+|+ +|. ...|++||+-|-.+.+-|
T Consensus 832 kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 832 RLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 8777 454 224899999998887764
No 210
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.85 E-value=1.2 Score=57.61 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=24.3
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHH
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIal 316 (972)
...||-|.+-...+.+.-... .-.++=-..|.|||+--|.-
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~---~~~~iEA~TGtGKTlaYLlp 296 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS---EHALIEAGTGTGKSLAYLLP 296 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCchhHHHHHH
Confidence 468899988555444332221 11234448999999865433
No 211
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=91.68 E-value=0.053 Score=59.59 Aligned_cols=43 Identities=28% Similarity=0.693 Sum_probs=35.1
Q ss_pred ccccccCCCCCCCc-ccccCCcchhhhhHhhhhcCCCCCCCCccc
Q 002077 683 SAICCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPAPRC 726 (972)
Q Consensus 683 ~~~C~iC~d~~~~~-vit~CgH~fC~~Ci~~~~~~~~~~cp~~~C 726 (972)
...|.+|..=+.++ .|+.|.|.||..||-.++.. ...||.|.|
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i 58 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDI 58 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccce
Confidence 46799998766554 78899999999999999987 789995443
No 212
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.40 E-value=1.3 Score=54.79 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=46.0
Q ss_pred eEEEEecchHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHhhhc---CC---CeeEEEEecCccccccCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH-------CIQYRRLDGTMSLPARDRAVKDFNT---DR---EITVMLMSLKAGNLGLNM 885 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~-------gi~~~~ldGs~s~~~R~~~I~~F~~---~~---~~~VlLiSlkagg~GLNL 885 (972)
.+|||-..-.++|-+....... +..-+.+- --+..+=.+++.+|.+ ++ ..-.|-+.--..++||++
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vE-Pr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVE-PRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccCceec-cCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 6788877666777775444332 22222221 1234455566777775 22 122233444567899999
Q ss_pred CC--CCEEEEecCCCCC
Q 002077 886 VA--ASHVILLDLWWNP 900 (972)
Q Consensus 886 t~--A~~VI~~Dp~WNp 900 (972)
.+ +..||..-+++=|
T Consensus 642 sD~~~RaVI~tGlPyP~ 658 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPP 658 (945)
T ss_pred cccCCceeEEecCCCCC
Confidence 76 5778877777643
No 213
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.36 E-value=0.073 Score=55.52 Aligned_cols=52 Identities=21% Similarity=0.499 Sum_probs=40.9
Q ss_pred cccccccCCC-CCCCc----cccc-CCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSD-PPEDS----VVTM-CGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d-~~~~~----vit~-CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
.+..|++|.. .--.| ++.+ |-|-+|..|+..+++....+||.+.|...++..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 3557999964 32233 4445 999999999999999999999999998877653
No 214
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.12 Score=56.74 Aligned_cols=35 Identities=26% Similarity=0.743 Sum_probs=32.4
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcC
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG 716 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~ 716 (972)
++..|+||...+..+|.++|+|.-|+.||.+++-.
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN 455 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN 455 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc
Confidence 46789999999999999999999999999999864
No 215
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=90.76 E-value=0.62 Score=57.38 Aligned_cols=47 Identities=19% Similarity=0.051 Sum_probs=32.7
Q ss_pred CeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccC
Q 002077 868 EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 914 (972)
Q Consensus 868 ~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiG 914 (972)
++.-||.|--|+-+|-+=+..=.+.-+-+.-+...-.|-+||.-|+-
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 44666777777777777666666666666667777777777777764
No 216
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=90.15 E-value=2.4 Score=53.25 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=52.0
Q ss_pred eEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHhhhcC---CCeeEEEEecCccccccCCCC--CCEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTD---REITVMLMSLKAGNLGLNMVA--ASHVI 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~-gi~~~~ldGs~s~~~R~~~I~~F~~~---~~~~VlLiSlkagg~GLNLt~--A~~VI 892 (972)
++|||...-.+++.+...|... ++. +...|. ..|.++++.|.+. .+..||+. +....+|+++.. +..||
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g-~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFG-LQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEE-eccccccccCCCCceEEEE
Confidence 5677766667777888888643 333 344564 3578899888752 23446665 488899999975 58888
Q ss_pred EecCCC
Q 002077 893 LLDLWW 898 (972)
Q Consensus 893 ~~Dp~W 898 (972)
+.-+|+
T Consensus 611 I~kLPF 616 (697)
T PRK11747 611 ITKIPF 616 (697)
T ss_pred EEcCCC
Confidence 888776
No 217
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=89.84 E-value=1.9 Score=53.82 Aligned_cols=99 Identities=21% Similarity=0.215 Sum_probs=72.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCC--CCEEEEec
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQ-YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILLD 895 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~-~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~--A~~VI~~D 895 (972)
++|||...-.++..+...|...... .+...|. ..+.+.++.|....+. .+++.+....+|+|+.. ...||+.-
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vvI~~ 556 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVVIVG 556 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEEEEe
Confidence 8899988888899999999887653 3444444 4556899999986443 55666799999999987 47788877
Q ss_pred CCCC-CC-----------------------------hHHHHhHhhcccCCcccEEE
Q 002077 896 LWWN-PT-----------------------------TEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 896 p~WN-p~-----------------------------~e~QAigRi~RiGQ~k~V~V 921 (972)
.||= |. ...|++||+.|-=+.+-|.|
T Consensus 557 lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 557 LPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 7773 32 44599999999544554444
No 218
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.35 E-value=0.89 Score=56.40 Aligned_cols=57 Identities=26% Similarity=0.250 Sum_probs=41.5
Q ss_pred CceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCC----hhh--hcCCCEEEEchhhhh
Q 002077 385 AGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD----PVE--LAKYDVVLTTYSIVT 444 (972)
Q Consensus 385 ~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~----~~~--l~~~DVVItTY~~l~ 444 (972)
+.+||++|. ++..|+..-|.+.|+ .-.|.+||..-.... +.. -.+.+|||=|.+.+-
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF 252 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF 252 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE
Confidence 459999995 689999999999986 245888888643322 222 245789999987664
No 219
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=88.77 E-value=0.94 Score=55.04 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=29.7
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHH
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~ 318 (972)
-...|-|+|.+|+.-+-+.|. .++.--.-.|||+.|=-.|+
T Consensus 126 YPF~LDpFQ~~aI~Cidr~eS-------VLVSAHTSAGKTVVAeYAIA 166 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRGES-------VLVSAHTSAGKTVVAEYAIA 166 (1041)
T ss_pred CCcccCchHhhhhhhhcCCce-------EEEEeecCCCcchHHHHHHH
Confidence 356799999999987664443 36666788999998754444
No 220
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=0.29 Score=54.33 Aligned_cols=50 Identities=24% Similarity=0.684 Sum_probs=38.8
Q ss_pred hhcccccccccCCCCCC-------------CcccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 678 RLETSSAICCVCSDPPE-------------DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 678 ~le~~~~~C~iC~d~~~-------------~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
.|..++..|.||+|.+. .|-..+|||++=..|+..|... +..|| -||.++
T Consensus 282 ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCP--ICr~p~ 344 (491)
T COG5243 282 QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCP--ICRRPV 344 (491)
T ss_pred hhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCC--cccCcc
Confidence 34568899999998742 2467899999999999999864 45788 577764
No 221
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.59 E-value=3.2 Score=52.28 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=68.5
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHhhhcC---CCeeEEEEec-CccccccCCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCI-------QYRRLDGTMSLPARDRAVKDFNTD---REITVMLMSL-KAGNLGLNMV 886 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi-------~~~~ldGs~s~~~R~~~I~~F~~~---~~~~VlLiSl-kagg~GLNLt 886 (972)
..+|||-..-.+|+.+...+...|+ ..+.+-+.. ..++.+++++|... ....||+... ...+||+|+.
T Consensus 523 gg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~ 601 (705)
T TIGR00604 523 DGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFC 601 (705)
T ss_pred CcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEEEEecCCcccCccccC
Confidence 3788887777778877777765533 223444432 25789999999752 2233444332 4678999998
Q ss_pred C--CCEEEEecCCC-CCC------------------------------hHHHHhHhhcccCCcccEEE
Q 002077 887 A--ASHVILLDLWW-NPT------------------------------TEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 887 ~--A~~VI~~Dp~W-Np~------------------------------~e~QAigRi~RiGQ~k~V~V 921 (972)
. +..||++-+|+ ||. ...||+||+.|--+-+-+.|
T Consensus 602 ~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~ii 669 (705)
T TIGR00604 602 DDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIV 669 (705)
T ss_pred CCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEE
Confidence 7 67888888777 553 23489999999776665433
No 222
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=88.48 E-value=2.9 Score=50.54 Aligned_cols=112 Identities=20% Similarity=0.255 Sum_probs=83.0
Q ss_pred CceEEEEecchHHHHHHHHHHHhC------CC--cEEEEeCCCCHHHHHHHHHhhhcCC-CeeEEEEecCccccccCCCC
Q 002077 817 PIKSIVFSQWTRMLDLVENSLNQH------CI--QYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVA 887 (972)
Q Consensus 817 ~~KvIVFSqft~~ld~L~~~L~~~------gi--~~~~ldGs~s~~~R~~~I~~F~~~~-~~~VlLiSlkagg~GLNLt~ 887 (972)
+.-||||=.--.-++.+...|.+. ++ -++-++|+++.++..++ |...| +.+-+++|+..+-+.|....
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecc
Confidence 347999988777677777766654 22 24679999998875544 77644 67777888899999998888
Q ss_pred CCEEE----EecCCCCCC-----------hHHHHhHhhcccCCcccEEEEEEecCCCHH
Q 002077 888 ASHVI----LLDLWWNPT-----------TEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931 (972)
Q Consensus 888 A~~VI----~~Dp~WNp~-----------~e~QAigRi~RiGQ~k~V~V~rli~~dTIE 931 (972)
..+|| .---.|||. ...||.-|++|-|.+.+..+|||+++.-.+
T Consensus 335 I~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 335 IRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred eEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 87776 122234553 566888999999999999999999988663
No 223
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=87.91 E-value=4.7 Score=51.56 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=25.3
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHH
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~ 318 (972)
...||-|..-...+.+.-....+ .++--..|.|||+.-+.-++
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~~~---~~~eA~tGtGKT~ayllp~l 286 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDGPA---SFIEAQTGIGKTYGYLLPLL 286 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCCCc---EEEECCCCCcHHHHHHHHHH
Confidence 47899998844444432221111 34555899999986554433
No 224
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=87.17 E-value=0.33 Score=56.44 Aligned_cols=45 Identities=36% Similarity=0.890 Sum_probs=37.7
Q ss_pred ccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 683 SAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
...|++|..+..+|+.+ .|||.||..|+..+... ...|| .|+..+
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp--~~~~~~ 66 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCP--VCRQEL 66 (391)
T ss_pred cccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCc--cccccc
Confidence 46799999999999995 99999999999999877 67787 454443
No 225
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=87.14 E-value=3.8 Score=40.72 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCC----cEEEEeCCCCHHHHHHHHHhhhcCCC--eeEEEEecCc--cccccCCCC--CCEEEEecCCC
Q 002077 829 MLDLVENSLNQHCI----QYRRLDGTMSLPARDRAVKDFNTDRE--ITVMLMSLKA--GNLGLNMVA--ASHVILLDLWW 898 (972)
Q Consensus 829 ~ld~L~~~L~~~gi----~~~~ldGs~s~~~R~~~I~~F~~~~~--~~VlLiSlka--gg~GLNLt~--A~~VI~~Dp~W 898 (972)
+++.+...++..++ .-+.+.+..+ .+..+++++|+.... -.||+ +... .+||+||.. +..||+.-.|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~-~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDS-GETEELLEKYSAACEARGALLL-AVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCC-chHHHHHHHHHHhcCCCCEEEE-EEeCCeeecceecCCCccEEEEEEecCC
Confidence 45666666666554 2344445432 355799999997422 13444 4344 799999987 56788777664
Q ss_pred -CCC
Q 002077 899 -NPT 901 (972)
Q Consensus 899 -Np~ 901 (972)
+|.
T Consensus 81 p~~~ 84 (142)
T smart00491 81 PNPD 84 (142)
T ss_pred CCCC
Confidence 443
No 226
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=86.98 E-value=9 Score=45.14 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=81.6
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCcc-ccccCCCCCCEEEEecC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG-NLGLNMVAASHVILLDL 896 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkag-g~GLNLt~A~~VI~~Dp 896 (972)
.++|||...---.-.|...|++.++.|+.+.-.++..+-.++-..|..+ ...+||.|-++- =.=..+-.+.+||+|.|
T Consensus 301 ~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~viFY~~ 379 (442)
T PF06862_consen 301 SGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVIFYGP 379 (442)
T ss_pred CcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEEEECC
Confidence 3888886533333347788999999999999999999999999999977 889999996652 12234667999999999
Q ss_pred CCCCChHHHHhHhhcccCC----cccEEEEEEecC
Q 002077 897 WWNPTTEDQAVDRAHRIGQ----TRPVTVTRLTIR 927 (972)
Q Consensus 897 ~WNp~~e~QAigRi~RiGQ----~k~V~V~rli~~ 927 (972)
|=+|.-....+.-+..-.+ .....|.-|+++
T Consensus 380 P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 380 PENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred CCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 9999977776655444333 344566666655
No 227
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.95 E-value=0.3 Score=54.55 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=41.8
Q ss_pred ccccccccCCCCCCCcccccCCcc-hhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 681 TSSAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~~vit~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
++..+|-||+..+.+-++.+|-|. +|..|..... ...+.|| -||..+..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CP--ICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCP--ICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCC--ccccchHh
Confidence 357899999999999999999997 8999988765 6678899 68888765
No 228
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=0.36 Score=54.62 Aligned_cols=48 Identities=23% Similarity=0.718 Sum_probs=35.6
Q ss_pred ccccccccCCCCCCCcc--------cccCCcchhhhhHhhhhcCCC------CCCCCccccccc
Q 002077 681 TSSAICCVCSDPPEDSV--------VTMCGHVFCYQCASEYITGDD------NMCPAPRCKEQL 730 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~~v--------it~CgH~fC~~Ci~~~~~~~~------~~cp~~~Cr~~l 730 (972)
.....|.||++...... +..|.|.||..||..|..... ..|| -||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP--~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCP--FCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCC--cccCcc
Confidence 35788999998765543 367999999999999985443 4777 465543
No 229
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=86.93 E-value=1.2 Score=51.18 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=15.7
Q ss_pred eecCCCChhHHHHHHHHHhh
Q 002077 301 LADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 301 LADdmGLGKTiqaIali~~~ 320 (972)
+-=..|.|||+.++.++...
T Consensus 6 I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 6 ITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEecCCcCHHHHHHHHHHHh
Confidence 34457999999999998753
No 230
>PRK10536 hypothetical protein; Provisional
Probab=86.83 E-value=0.64 Score=50.66 Aligned_cols=39 Identities=23% Similarity=0.076 Sum_probs=30.8
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
++-..|...+.|+.+.+ . .++--+.|.|||..++|+.+.
T Consensus 59 p~n~~Q~~~l~al~~~~---l----V~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 59 ARNEAQAHYLKAIESKQ---L----IFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCCHHHHHHHHHHhcCC---e----EEEECCCCCCHHHHHHHHHHH
Confidence 46678999999887532 1 477789999999999998874
No 231
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.90 E-value=0.49 Score=53.55 Aligned_cols=53 Identities=30% Similarity=0.657 Sum_probs=40.6
Q ss_pred ccccccccCCCCCC---CcccccCCcchhhhhHhhhhcC-------CCCCCCCcccccccccc
Q 002077 681 TSSAICCVCSDPPE---DSVVTMCGHVFCYQCASEYITG-------DDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 681 ~~~~~C~iC~d~~~---~~vit~CgH~fC~~Ci~~~~~~-------~~~~cp~~~Cr~~l~~~ 733 (972)
.+-..|.||.+... .-+.++|+|+||..|..+|.+. ..-.||.+.|.+.....
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g 244 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPG 244 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCch
Confidence 35678999988653 3577899999999999998752 22489999998765544
No 232
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.56 E-value=0.52 Score=51.17 Aligned_cols=47 Identities=23% Similarity=0.598 Sum_probs=36.3
Q ss_pred ccccCCCC-CC----CcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 685 ICCVCSDP-PE----DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 685 ~C~iC~d~-~~----~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
.|+.|... -. ...+-.|||..|..|+..++......|| .|...+..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~Cp--eC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCP--ECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCC--cccchhhhc
Confidence 47788532 22 2355599999999999999999999999 887777654
No 233
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.09 E-value=0.36 Score=51.56 Aligned_cols=56 Identities=32% Similarity=0.764 Sum_probs=41.5
Q ss_pred cccccccCCCCCC----------CcccccCCcchhhhhHhhh-hcCCCCCCCCcccccccccccccccc
Q 002077 682 SSAICCVCSDPPE----------DSVVTMCGHVFCYQCASEY-ITGDDNMCPAPRCKEQLGADVVFSKT 739 (972)
Q Consensus 682 ~~~~C~iC~d~~~----------~~vit~CgH~fC~~Ci~~~-~~~~~~~cp~~~Cr~~l~~~~~~s~~ 739 (972)
+...|.+|..... ...-..|+|+|=.-||..| +-+....|| .|++.+.....|+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCP--YCKekVdl~rmfsnp 289 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCP--YCKEKVDLKRMFSNP 289 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCc--hHHHHhhHhhhccCc
Confidence 4567888865432 2334579999999999999 567888999 798887766665543
No 234
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.75 E-value=0.61 Score=49.20 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=37.1
Q ss_pred cccccccCCCCCCC----cccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~----~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
...+|++|.+.+.+ +|+.+|||++|++|+..+|..+ -.|| .|..++...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~p--v~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDP--VTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-cccc--CCCCcCccc
Confidence 46789999998764 4778999999999999988654 4566 455555443
No 235
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.41 E-value=0.52 Score=49.70 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=30.0
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYIT 715 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~ 715 (972)
..-|+.|+-|..+||+++-||+||.+||-++|-
T Consensus 43 FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 456999999999999999999999999999874
No 236
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=83.45 E-value=0.54 Score=55.98 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=34.1
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhh
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (972)
+...|-+-|+.|+.+...... + -++--..|.|||.+..-+|...
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~--l----~~I~GPPGTGKT~TlvEiI~ql 225 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKD--L----LIIHGPPGTGKTRTLVEIISQL 225 (649)
T ss_pred CCccccHHHHHHHHHHhccCC--c----eEeeCCCCCCceeeHHHHHHHH
Confidence 455788999999999986532 1 2666789999999988888753
No 237
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=83.37 E-value=0.42 Score=48.97 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=13.2
Q ss_pred hhcCCCEEEEchhhhhc
Q 002077 429 ELAKYDVVLTTYSIVTN 445 (972)
Q Consensus 429 ~l~~~DVVItTY~~l~~ 445 (972)
....+||||++|..+-.
T Consensus 116 ~~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFD 132 (174)
T ss_dssp CGGG-SEEEEETHHHHS
T ss_pred hcccCCEEEeCHHHHhh
Confidence 45679999999999865
No 238
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=0.56 Score=53.98 Aligned_cols=45 Identities=29% Similarity=0.771 Sum_probs=34.8
Q ss_pred cccccccCCCCCC-----------------CcccccCCcchhhhhHhhhhcCCCCCCCCccc
Q 002077 682 SSAICCVCSDPPE-----------------DSVVTMCGHVFCYQCASEYITGDDNMCPAPRC 726 (972)
Q Consensus 682 ~~~~C~iC~d~~~-----------------~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~C 726 (972)
....|.||+.+.+ .-.+|+|.|+|-..|+.+|..+-.-.||+|+|
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~ 631 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRC 631 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCC
Confidence 3567999986542 13568999999999999999877778996444
No 239
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.65 E-value=0.83 Score=51.23 Aligned_cols=52 Identities=31% Similarity=0.685 Sum_probs=36.2
Q ss_pred ccccccCCCCCC----CcccccCCcchhhhhHhhhhcCCCC--CCCCccccccccccccc
Q 002077 683 SAICCVCSDPPE----DSVVTMCGHVFCYQCASEYITGDDN--MCPAPRCKEQLGADVVF 736 (972)
Q Consensus 683 ~~~C~iC~d~~~----~~vit~CgH~fC~~Ci~~~~~~~~~--~cp~~~Cr~~l~~~~~~ 736 (972)
.++|.||.|-.. -.-+..|||+|-..|+.+|+.++.. .|| -|+-.+....+|
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cp--ic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCP--ICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCC--ceeecccceeee
Confidence 468999966432 2355679999999999999987655 677 455444444444
No 240
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=82.24 E-value=1.4 Score=39.45 Aligned_cols=43 Identities=28% Similarity=0.755 Sum_probs=30.9
Q ss_pred cccCCCCCCC-c-ccccCCcchhhhhHhhhhcCC--CCCCCCccccccc
Q 002077 686 CCVCSDPPED-S-VVTMCGHVFCYQCASEYITGD--DNMCPAPRCKEQL 730 (972)
Q Consensus 686 C~iC~d~~~~-~-vit~CgH~fC~~Ci~~~~~~~--~~~cp~~~Cr~~l 730 (972)
|+.|..|-++ | |...|+|.|-..||.+|+... ...|| .||...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CP--mCR~~w 81 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCP--MCRQPW 81 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCC--CcCCee
Confidence 4444444333 4 556899999999999999864 56888 688754
No 241
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=80.42 E-value=5.3 Score=50.76 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=76.8
Q ss_pred CceEEEEecchHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHhhhcCC-CeeEEEEecCccccccCCCCC
Q 002077 817 PIKSIVFSQWTRMLDLVENSLNQH-------CIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAA 888 (972)
Q Consensus 817 ~~KvIVFSqft~~ld~L~~~L~~~-------gi~~~~ldGs~s~~~R~~~I~~F~~~~-~~~VlLiSlkagg~GLNLt~A 888 (972)
+.-||||-.-..-+..+...|..+ .+-...++++|+..+.+.+ |+..| +++=+|++|.-+-+.+..-+.
T Consensus 413 ~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdDV 489 (924)
T KOG0920|consen 413 EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDDV 489 (924)
T ss_pred CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccCe
Confidence 448999999888777777777642 3557889999998776665 66543 556667788999999999988
Q ss_pred CEEE--------EecC----------CCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 889 SHVI--------LLDL----------WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 889 ~~VI--------~~Dp----------~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
-+|| .||| |-.-+.-.||.||++| .++=..|+++.+.
T Consensus 490 vyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 490 VYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRS 544 (924)
T ss_pred EEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechh
Confidence 8887 4444 3344556687777765 4566788888765
No 242
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=79.89 E-value=8.4 Score=48.97 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=77.3
Q ss_pred ceEEEEecchHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHhhhcCCCe-eEEEEecCccccccCCCCCCEEE
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREI-TVMLMSLKAGNLGLNMVAASHVI 892 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~----~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~-~VlLiSlkagg~GLNLt~A~~VI 892 (972)
.-||||=.=..-++.....|.+ ..+.++-++|.++.++..++ |+..+.- +-+++||..+-++|......+||
T Consensus 260 GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 260 GSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 3799997777777777777776 35788999999999887764 6654433 43566889999999999988887
Q ss_pred --------EecCCCCC-------ChHHHHhHhhcccCCcccEEEEEEecCCCHH
Q 002077 893 --------LLDLWWNP-------TTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931 (972)
Q Consensus 893 --------~~Dp~WNp-------~~e~QAigRi~RiGQ~k~V~V~rli~~dTIE 931 (972)
.||+-=.- -....|.-|++|-|.+.+=..|||+.++..+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 22222111 1223344455555667788899999986544
No 243
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=79.43 E-value=7.5 Score=48.44 Aligned_cols=70 Identities=23% Similarity=0.231 Sum_probs=49.7
Q ss_pred CchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCcc
Q 002077 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 354 (972)
Q Consensus 275 LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 354 (972)
....|..++.-+.+.-... .+.-+|---.|-|||+++..++..
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~--~~~~~l~Gvtgs~kt~~~a~~~~~----------------------------------- 52 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDG--EKHQTLLGVTGSGKTFTMANVIAQ----------------------------------- 52 (655)
T ss_pred CChHHHHHHHHHHHhhhcC--CCcEEEECCCCcHHHHHHHHHHHH-----------------------------------
Confidence 4457888877766443221 112356677899999998887752
Q ss_pred cccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCC
Q 002077 355 KVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPD 409 (972)
Q Consensus 355 ~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~ 409 (972)
..+++|||+|. .+..||.+|++.|+++
T Consensus 53 ----------------------------~~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 53 ----------------------------VNRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred ----------------------------hCCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 12469999996 5778999999999985
No 244
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=79.37 E-value=2.7 Score=52.66 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=57.5
Q ss_pred EeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC-CCCCChHHHHhHhhcccCCcc
Q 002077 847 LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL-WWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 847 ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp-~WNp~~e~QAigRi~RiGQ~k 917 (972)
-+..+....|..+---|+.+ ...|++ +|...+.|+|+.+-..||..|. .-||-...|+.||++|-|=..
T Consensus 968 HHaglNr~yR~~VEvLFR~g-~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~ 1037 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQG-HLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDT 1037 (1330)
T ss_pred cccccchHHHHHHHHHhhcC-ceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhcccccccccc
Confidence 45677788898887888875 666665 6699999999999999999885 489999999999999988544
No 245
>PRK04296 thymidine kinase; Provisional
Probab=77.47 E-value=2.5 Score=44.06 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=16.7
Q ss_pred eeecCCCChhHHHHHHHHHh
Q 002077 300 ILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~~ 319 (972)
++.-+||-|||..++.++..
T Consensus 6 litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEECCCCCHHHHHHHHHHHH
Confidence 67779999999888888764
No 246
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.09 E-value=0.59 Score=52.77 Aligned_cols=57 Identities=25% Similarity=0.605 Sum_probs=41.3
Q ss_pred ccccccCCCCCCCc-----ccccCCcchhhhhHhhhhcCCC--CCCCCccccccccccccccccccc
Q 002077 683 SAICCVCSDPPEDS-----VVTMCGHVFCYQCASEYITGDD--NMCPAPRCKEQLGADVVFSKTTLK 742 (972)
Q Consensus 683 ~~~C~iC~d~~~~~-----vit~CgH~fC~~Ci~~~~~~~~--~~cp~~~Cr~~l~~~~~~s~~~l~ 742 (972)
...|++|+|.-+.| |+..|||.|-.+||..|+. .. -+|| .|........++....++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~~~~~cp--~c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KKTKMQCP--LCSGKATKRQIRPEYALR 67 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hhhhhhCc--ccCChhHHHHHHHHHHHH
Confidence 46899999987765 5678999999999999995 33 3666 677665555554444443
No 247
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.09 E-value=1.2 Score=47.54 Aligned_cols=43 Identities=33% Similarity=0.783 Sum_probs=29.4
Q ss_pred ccccCCCCC--CCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 685 ICCVCSDPP--EDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 685 ~C~iC~d~~--~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
.|-.|...+ ..-.+|.|+||||..|...-.. ..|| .|+..+..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~--lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCP--LCKKSIRI 49 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCc---cccc--cccceeee
Confidence 466665433 3347899999999999875321 2777 78887654
No 248
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=76.04 E-value=1.6 Score=35.79 Aligned_cols=44 Identities=27% Similarity=0.604 Sum_probs=31.8
Q ss_pred cccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 684 AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 684 ~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
..|-.|.......++.+|||+.|..|... .+-+-|| -|...+..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCP--fC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCP--FCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccceeeccccCh---hhccCCC--CCCCcccC
Confidence 45666777767788999999999999764 3446788 46655543
No 249
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=75.84 E-value=1.2 Score=48.57 Aligned_cols=42 Identities=33% Similarity=0.824 Sum_probs=28.7
Q ss_pred ccccccCCCCCCC-cccccCCcchhhhhHhhhhcCCCCCCCCcccccc
Q 002077 683 SAICCVCSDPPED-SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQ 729 (972)
Q Consensus 683 ~~~C~iC~d~~~~-~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~ 729 (972)
.-.|..|.-+..- --..+|.|+||++|.... .+..|| .|...
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp--~C~d~ 132 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICP--LCDDR 132 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC---ccccCc--CcccH
Confidence 4568888766543 355689999999997752 355777 55444
No 250
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=75.64 E-value=2.6 Score=33.68 Aligned_cols=43 Identities=23% Similarity=0.772 Sum_probs=21.7
Q ss_pred cccCCCCCCCc----ccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 686 CCVCSDPPEDS----VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 686 C~iC~d~~~~~----vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
|++|.+.++.. ..=.||+.+|..|...++...+..|| .||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CP--gCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCP--GCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-T--TT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCC--CCCCCC
Confidence 56676655321 22268999999999999987888999 787653
No 251
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.57 E-value=11 Score=45.96 Aligned_cols=116 Identities=20% Similarity=0.290 Sum_probs=81.0
Q ss_pred CceEEEEecc----hHHHHHHHHHHHhC------CCcEEEEeCCCCHHHHHHHHHhhhc-CCCeeEEEEecCccccccCC
Q 002077 817 PIKSIVFSQW----TRMLDLVENSLNQH------CIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAGNLGLNM 885 (972)
Q Consensus 817 ~~KvIVFSqf----t~~ld~L~~~L~~~------gi~~~~ldGs~s~~~R~~~I~~F~~-~~~~~VlLiSlkagg~GLNL 885 (972)
+.-+|||-.- -.+.+.|...|.+. ++.+.-|...++.+...++ |+. .++++-.|+++..+-+.|..
T Consensus 563 ~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi 639 (1042)
T KOG0924|consen 563 PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTI 639 (1042)
T ss_pred CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceee
Confidence 3478888653 23567777777653 6778889999987765444 774 44777778888999999998
Q ss_pred CCCCEEEEec----CCCCCC-----------hHHHHhHhhcccCCcccEEEEEEecCCCHHHHHH
Q 002077 886 VAASHVILLD----LWWNPT-----------TEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 935 (972)
Q Consensus 886 t~A~~VI~~D----p~WNp~-----------~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il 935 (972)
..-.+||=-- -.+||. ...||--|++|-|.+.|-.-||++++++..+-|+
T Consensus 640 ~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 640 PGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred cceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 8887777110 112333 4456666777777788999999999987766543
No 252
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.11 E-value=1.2 Score=49.96 Aligned_cols=44 Identities=34% Similarity=0.863 Sum_probs=32.6
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
....|.+|.+.+.+.+..+|||+.| |......- ..|| .||..|.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l--~~CP--vCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL--PQCP--VCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhC--CCCc--hhHHHHH
Confidence 3567999999999999999999977 55543222 3487 6887664
No 253
>PF04641 Rtf2: Rtf2 RING-finger
Probab=74.78 E-value=2.3 Score=46.68 Aligned_cols=49 Identities=22% Similarity=0.459 Sum_probs=37.3
Q ss_pred ccccccccCCCCCCC----cccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 681 TSSAICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~----~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
.....|+++...+.. .++-+||||||+.|+.++- ....|| .|..++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp--~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCP--VCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--cccccc--ccCCccccC
Confidence 356789999887743 3566999999999999983 456788 687777654
No 254
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.97 E-value=1.8 Score=50.30 Aligned_cols=52 Identities=33% Similarity=0.730 Sum_probs=38.6
Q ss_pred ccccccCC-CCCC---CcccccCCcchhhhhHhhhhc-----CCCCCCCCccccccccccc
Q 002077 683 SAICCVCS-DPPE---DSVVTMCGHVFCYQCASEYIT-----GDDNMCPAPRCKEQLGADV 734 (972)
Q Consensus 683 ~~~C~iC~-d~~~---~~vit~CgH~fC~~Ci~~~~~-----~~~~~cp~~~Cr~~l~~~~ 734 (972)
..+|.+|. +.+. ...+..|+|.||.+|+.+++. +....||...|...+....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 46788887 3332 234678999999999999987 3456899888887766543
No 255
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=71.70 E-value=33 Score=42.58 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=29.2
Q ss_pred CceEEEcCc-hhHHHHHHHHHhhC-C-CCCCeEEEEEeCCCCCCC
Q 002077 385 AGTLVVCPA-SVLRQWARELEDKV-P-DKAALSVLIYHGGSRTKD 426 (972)
Q Consensus 385 ~~tLIV~P~-sLl~QW~~Ei~k~~-~-~~~~l~vlvy~G~~r~~~ 426 (972)
++.||.+|+ .|..|+.+++.... . ....+++.+..|......
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~nYlC 91 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQEFVS 91 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCccccc
Confidence 458999996 47899999888654 1 122677888788765443
No 256
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=68.52 E-value=3.6 Score=51.71 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.6
Q ss_pred hhcCCCEEEEchhhhhccC
Q 002077 429 ELAKYDVVLTTYSIVTNEV 447 (972)
Q Consensus 429 ~l~~~DVVItTY~~l~~e~ 447 (972)
....+|||||.+..|-.++
T Consensus 216 ~a~~AdivVtNH~LLladl 234 (697)
T PRK11747 216 EIDEADVVVANHDLVLADL 234 (697)
T ss_pred HHhhCCEEEECcHHHHhhh
Confidence 4578999999999987753
No 257
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.72 E-value=39 Score=40.88 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=69.3
Q ss_pred ccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC-CCcEEEE
Q 002077 769 YISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRL 847 (972)
Q Consensus 769 ~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~-gi~~~~l 847 (972)
..|.|-...+..+...+..+. ++||.+.......-+...|++. |.....+
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~-----------------------------~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vl 56 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGK-----------------------------SVLVLVPEIALTPQMIQRFKYRFGSQVAVL 56 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-----------------------------eEEEEeCcHHHHHHHHHHHHHHhCCcEEEE
Confidence 378899988888888777766 8999999999888888888765 7889999
Q ss_pred eCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE
Q 002077 848 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL 893 (972)
Q Consensus 848 dGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~ 893 (972)
+|.++..+|.+...+-..+ +..|++.+..+. =+-+.....||+
T Consensus 57 hs~~~~~er~~~~~~~~~g-~~~IVVGTrsal--f~p~~~l~lIIV 99 (505)
T TIGR00595 57 HSGLSDSEKLQAWRKVKNG-EILVVIGTRSAL--FLPFKNLGLIIV 99 (505)
T ss_pred ECCCCHHHHHHHHHHHHcC-CCCEEECChHHH--cCcccCCCEEEE
Confidence 9999999998887776654 566766554332 123344444443
No 258
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=65.90 E-value=24 Score=44.82 Aligned_cols=41 Identities=32% Similarity=0.363 Sum_probs=30.7
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (972)
.|-.-|++|+...+.-+... ++---.|.|||-+..+||...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~------LI~GMPGTGKTTtI~~LIkiL 709 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYA------LILGMPGTGKTTTISLLIKIL 709 (1100)
T ss_pred hcCHHHHHHHHHHHhccchh------eeecCCCCCchhhHHHHHHHH
Confidence 68889999999888776654 344456999998777777543
No 259
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.65 E-value=5.2 Score=47.51 Aligned_cols=54 Identities=30% Similarity=0.722 Sum_probs=42.8
Q ss_pred cccccccCCCCCCC-cccccCCcchhhhhHhhhhcCC-----C--CCCCCcccccccccccc
Q 002077 682 SSAICCVCSDPPED-SVVTMCGHVFCYQCASEYITGD-----D--NMCPAPRCKEQLGADVV 735 (972)
Q Consensus 682 ~~~~C~iC~d~~~~-~vit~CgH~fC~~Ci~~~~~~~-----~--~~cp~~~Cr~~l~~~~~ 735 (972)
....|.+|.+.... .+...|||.||..|...|++.. . -.||...|......+.+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i 130 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTV 130 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCcee
Confidence 45789999988775 6667899999999999998632 1 36899999988776544
No 260
>PRK05580 primosome assembly protein PriA; Validated
Probab=64.10 E-value=45 Score=41.91 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=70.4
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC-CCcEEEEe
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLD 848 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~-gi~~~~ld 848 (972)
.|.|....+..+...+..+. ++||.+........+...|++. |+....++
T Consensus 172 GSGKT~v~l~~i~~~l~~g~-----------------------------~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~ 222 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGK-----------------------------QALVLVPEIALTPQMLARFRARFGAPVAVLH 222 (679)
T ss_pred CChHHHHHHHHHHHHHHcCC-----------------------------eEEEEeCcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 68899988888877776665 8999999999988888888764 88999999
Q ss_pred CCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEe
Q 002077 849 GTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 894 (972)
Q Consensus 849 Gs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~ 894 (972)
|.++..+|.+.......+ .+.|++.+..+. =+.+.....||+=
T Consensus 223 s~~s~~~r~~~~~~~~~g-~~~IVVgTrsal--~~p~~~l~liVvD 265 (679)
T PRK05580 223 SGLSDGERLDEWRKAKRG-EAKVVIGARSAL--FLPFKNLGLIIVD 265 (679)
T ss_pred CCCCHHHHHHHHHHHHcC-CCCEEEeccHHh--cccccCCCEEEEE
Confidence 999999998888887765 567777664332 2344444555443
No 261
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=63.56 E-value=18 Score=38.90 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=70.7
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
.+-+||-|.+-+..|.+-. ...+.++=--||-|||-..+=++......
T Consensus 21 ~iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla~~LAd---------------------------- 68 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLALALAD---------------------------- 68 (229)
T ss_pred CceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHHHHHcC----------------------------
Confidence 4579999999999998532 23456888899999997766555543221
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCC-CCCC--Chh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG-SRTK--DPV 428 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~-~r~~--~~~ 428 (972)
..+=.-||||+.|+.|-.+-+...+.. -+.--+|+=. +|.. +..
T Consensus 69 -------------------------------g~~LvrviVpk~Ll~q~~~~L~~~lg~--l~~r~i~~lpFsR~~~~~~~ 115 (229)
T PF12340_consen 69 -------------------------------GSRLVRVIVPKALLEQMRQMLRSRLGG--LLNRRIYHLPFSRSTPLTPE 115 (229)
T ss_pred -------------------------------CCcEEEEEcCHHHHHHHHHHHHHHHHH--HhCCeeEEecccCCCCCCHH
Confidence 001267899999999999999888753 2322333322 2221 111
Q ss_pred -----------hhcCCCEEEEchhhhhc
Q 002077 429 -----------ELAKYDVVLTTYSIVTN 445 (972)
Q Consensus 429 -----------~l~~~DVVItTY~~l~~ 445 (972)
....-.|++++.+.+.+
T Consensus 116 ~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 116 TLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred HHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 11356799999887755
No 262
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=62.63 E-value=20 Score=45.14 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.-.|+.++++.+....+.|. .|||-+-....-+.+...|.++||+...|..
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gq-----------------------------PvLvgT~sie~SE~ls~~L~~~~i~h~VLNA 461 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQ-----------------------------PVLVGTVSIEKSELLSKLLRKAGIPHNVLNA 461 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCC-----------------------------CEEEcCcceecchhHHHHHHhcCCCceeecc
Confidence 34689999999999988887 9999999999999999999999999989988
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC-C----------EEEEecCCCCCChHHHHhHhhcccC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA-S----------HVILLDLWWNPTTEDQAVDRAHRIG 914 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A-~----------~VI~~Dp~WNp~~e~QAigRi~RiG 914 (972)
.-. .|+.-|-.+.-. ...| =++|.-+|.|-++.-- + +||=-+-.=+-....|--||++|.|
T Consensus 462 k~h--~~EA~Iia~AG~-~gaV-TiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 462 KNH--AREAEIIAQAGQ-PGAV-TIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred ccH--HHHHHHHhhcCC-CCcc-ccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 865 444444444421 2223 3466778888887643 2 5666666655556668889999999
No 263
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=62.48 E-value=43 Score=30.83 Aligned_cols=56 Identities=5% Similarity=-0.037 Sum_probs=39.6
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEE
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 874 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLi 874 (972)
+|+||+. +=.+...+...|.+.|++|..++=....+.|+.+.+......-+.|++-
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 9999975 3456778889999999999998876666666665555543333445543
No 264
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.18 E-value=34 Score=41.76 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=63.3
Q ss_pred ceEEEEecchHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHhhhcCC-CeeEEEEecCccccccCCCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQH---------CIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVA 887 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~---------gi~~~~ldGs~s~~~R~~~I~~F~~~~-~~~VlLiSlkagg~GLNLt~ 887 (972)
.-||||----.-++..+..|.+. .+-.+-|+..+|.+...++ |...| +.+-+++.+..+-+.|.+..
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecC
Confidence 37899976555555555555432 3447788899987765554 66543 44444445588877777776
Q ss_pred CCEEEEecCCC------CC--------------ChHHHHhHhhcccCCcccEEEEEEec
Q 002077 888 ASHVILLDLWW------NP--------------TTEDQAVDRAHRIGQTRPVTVTRLTI 926 (972)
Q Consensus 888 A~~VI~~Dp~W------Np--------------~~e~QAigRi~RiGQ~k~V~V~rli~ 926 (972)
..+|| ||.+ || +.-.||.||++|.|- -.-|||++
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgP---GKCfRLYt 604 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGP---GKCFRLYT 604 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCC---CceEEeec
Confidence 66655 5544 33 355677777777664 44566665
No 265
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.11 E-value=2 Score=46.60 Aligned_cols=42 Identities=36% Similarity=0.986 Sum_probs=33.0
Q ss_pred ccccccCCCCCCCcccccCCcc-hhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
...|.||+|.|.+=+...|||. -|++|=... +.|| -||..+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCP--ICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECP--ICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCc--hHHHHHH
Confidence 5679999999999999999994 788885432 3677 5877654
No 266
>PHA03096 p28-like protein; Provisional
Probab=61.01 E-value=4.6 Score=44.80 Aligned_cols=34 Identities=21% Similarity=0.478 Sum_probs=27.4
Q ss_pred cccccCCCCCC--------CcccccCCcchhhhhHhhhhcCC
Q 002077 684 AICCVCSDPPE--------DSVVTMCGHVFCYQCASEYITGD 717 (972)
Q Consensus 684 ~~C~iC~d~~~--------~~vit~CgH~fC~~Ci~~~~~~~ 717 (972)
.+|.+|++... .-++..|.|.||..|+..|....
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 68999998653 23667899999999999998643
No 267
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=60.98 E-value=41 Score=42.28 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=53.0
Q ss_pred eEEEEecchHHHHHHHH----HHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEE
Q 002077 819 KSIVFSQWTRMLDLVEN----SLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~----~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI 892 (972)
+++|.+.-...+.-+.. .+...|+++..++|+++.++|.+.++...++ .+.|++.+.......+.+.....||
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCEEEchHHHhcccchhcccceEE
Confidence 89999988776554444 4445589999999999999999999988865 6777777654444455555544444
No 268
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=60.87 E-value=1.7 Score=52.66 Aligned_cols=47 Identities=21% Similarity=0.507 Sum_probs=30.5
Q ss_pred cccccCCCCCCCcc-c--ccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 684 AICCVCSDPPEDSV-V--TMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 684 ~~C~iC~d~~~~~v-i--t~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
..|++|.....+-. . .+|+|+||..||..|- .-...|| .|+..+..-
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs-R~aqTCP--iDR~EF~~v 173 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS-RCAQTCP--VDRGEFGEV 173 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhh-hhcccCc--hhhhhhhee
Confidence 45777765544332 2 3699999999998864 3345777 577765543
No 269
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=60.84 E-value=11 Score=46.72 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=37.8
Q ss_pred hhcCC-CeeEEEEecCccccccCCCCCCEEE------------------EecCCCCCChHHHHhHhhcccCCcccEEEEE
Q 002077 863 FNTDR-EITVMLMSLKAGNLGLNMVAASHVI------------------LLDLWWNPTTEDQAVDRAHRIGQTRPVTVTR 923 (972)
Q Consensus 863 F~~~~-~~~VlLiSlkagg~GLNLt~A~~VI------------------~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~r 923 (972)
|..-| +.+..++++.++-+.|.+...-+|| |-=-|-+.+.-+||.||++|+|-- +-||
T Consensus 623 F~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpG---HcYR 699 (1172)
T KOG0926|consen 623 FDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPG---HCYR 699 (1172)
T ss_pred ccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCC---ceee
Confidence 44422 5566666666666666666666665 222355677778999999888854 4566
Q ss_pred Ee
Q 002077 924 LT 925 (972)
Q Consensus 924 li 925 (972)
|+
T Consensus 700 LY 701 (1172)
T KOG0926|consen 700 LY 701 (1172)
T ss_pred hh
Confidence 65
No 270
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=60.08 E-value=36 Score=42.61 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=52.0
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
...|.++|..++.-+...-... ....+|---.|-|||+.+.+++..
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~--~~~~ll~Gl~gs~ka~lia~l~~~-------------------------------- 55 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAG--EKHQTLLGVTGSGKTFTMANVIAR-------------------------------- 55 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcC--CCcEEEEcCCCcHHHHHHHHHHHH--------------------------------
Confidence 3468899999988776443211 112356667899999987765531
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCC
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPD 409 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~ 409 (972)
..+++|||+|. ....||.+++..|++.
T Consensus 56 -------------------------------~~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 56 -------------------------------LQRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred -------------------------------hCCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 12459999997 5789999999999874
No 271
>PHA02533 17 large terminase protein; Provisional
Probab=59.81 E-value=71 Score=38.93 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=28.5
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
..+.|.|+|+.-+.+|... +. -++.=.=..|||..+.++++.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~---R~----~ii~~aRq~GKStl~a~~al~ 97 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKN---RF----NACNLSRQLGKTTVVAIFLLH 97 (534)
T ss_pred eecCCcHHHHHHHHHHhcC---eE----EEEEEcCcCChHHHHHHHHHH
Confidence 3567999999988887421 11 144444579999988776654
No 272
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=58.68 E-value=24 Score=38.19 Aligned_cols=46 Identities=22% Similarity=0.458 Sum_probs=38.3
Q ss_pred cccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCC-CCCCCCcccc
Q 002077 682 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGD-DNMCPAPRCK 727 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~-~~~cp~~~Cr 727 (972)
-+..|++-..+...|++. .|||+|-.+-|.+++... .-.||+..|.
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 356788888888888875 799999999999998764 3489998887
No 273
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.71 E-value=20 Score=41.49 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=36.4
Q ss_pred ceEEEcCch-hHHHH---HHHHHhhCCCCCCeEEE-EEeCCCCCCChhhhc-CCCEEEEchhhhh
Q 002077 386 GTLVVCPAS-VLRQW---ARELEDKVPDKAALSVL-IYHGGSRTKDPVELA-KYDVVLTTYSIVT 444 (972)
Q Consensus 386 ~tLIV~P~s-Ll~QW---~~Ei~k~~~~~~~l~vl-vy~G~~r~~~~~~l~-~~DVVItTY~~l~ 444 (972)
++||+.|+. |..|- ..++.++. .++.. +|+|.+.......+. ..||||.|-..+.
T Consensus 92 RalilsptreLa~qtlkvvkdlgrgt----~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~ 152 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRGT----KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLL 152 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhcccc----chhhhhhcccchHHHHHHHhccCCCEEEecCceee
Confidence 489999975 66664 44555544 45555 566655555555564 7999999987764
No 274
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=55.66 E-value=50 Score=41.16 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=50.9
Q ss_pred eEEEEecchHHHHHHHHHHH----hCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEE
Q 002077 819 KSIVFSQWTRMLDLVENSLN----QHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHV 891 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~----~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~V 891 (972)
+++|.+.....+.-+...++ ..|+++..++|+++.++|...++...++ .+.|++.+....-..+.+.....|
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g-~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG-QIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC-CCCEEEecHHHHhccccccccceE
Confidence 89999888777665555444 4589999999999999999998888765 666777654444444444444433
No 275
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=55.29 E-value=33 Score=42.73 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=31.7
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
..|-+.|+.||.+++.... -.|+--..|.|||-++.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~------~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKD------LFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCHHHHHHHHHHhcCCC------eEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999874321 1367778999999988888864
No 276
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=54.40 E-value=16 Score=42.47 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=35.5
Q ss_pred eEEEcCch-hHHHHHHHHHhhCCC-CCCeEEEEEeC-CCCCCChhh-hcCCCEEEEchhhhhcc
Q 002077 387 TLVVCPAS-VLRQWARELEDKVPD-KAALSVLIYHG-GSRTKDPVE-LAKYDVVLTTYSIVTNE 446 (972)
Q Consensus 387 tLIV~P~s-Ll~QW~~Ei~k~~~~-~~~l~vlvy~G-~~r~~~~~~-l~~~DVVItTY~~l~~e 446 (972)
.+|+||+- |+.|-...|++.+.- ...++++-... .+....... ....||||+|...+-..
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 79999975 888888888775320 00234333332 111112222 35789999999887654
No 277
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=54.39 E-value=22 Score=45.54 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=39.1
Q ss_pred CCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhh
Q 002077 382 RPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 444 (972)
Q Consensus 382 ~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~ 444 (972)
.|.+.+.+|+|. .|+.-=.+...+..... .+++.-..|... .+.....+.|++|||.+..-
T Consensus 971 ~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~-pd~~~v~~~~~~ittpek~d 1032 (1230)
T KOG0952|consen 971 YPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVT-PDVKAVREADIVITTPEKWD 1032 (1230)
T ss_pred CCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccC-CChhheecCceEEccccccc
Confidence 445679999994 56644333333332222 577777766554 34778889999999987653
No 278
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=53.91 E-value=6.4 Score=44.77 Aligned_cols=33 Identities=24% Similarity=0.649 Sum_probs=29.7
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYIT 715 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~ 715 (972)
.-.|++|..-.++|+|.+|+|-+|..|....+.
T Consensus 4 elkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 4 ELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 346999999999999999999999999998764
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.68 E-value=11 Score=46.83 Aligned_cols=50 Identities=28% Similarity=0.719 Sum_probs=37.4
Q ss_pred HHHHhhccccc-----ccccCCCCCCCccc-ccCCcchhhhhHhhhhcCCCCCCCCcccccc
Q 002077 674 DLLSRLETSSA-----ICCVCSDPPEDSVV-TMCGHVFCYQCASEYITGDDNMCPAPRCKEQ 729 (972)
Q Consensus 674 ~ll~~le~~~~-----~C~iC~d~~~~~vi-t~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~ 729 (972)
..++.+..+.. .|+.|.-+++-|++ ..|||.|=..|+. .....|| .|...
T Consensus 826 ~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP--~C~~e 881 (933)
T KOG2114|consen 826 QELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCP--KCLPE 881 (933)
T ss_pred HHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCC--ccchh
Confidence 34444554444 89999999998866 5899999999998 3556888 67653
No 280
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.55 E-value=34 Score=43.27 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=33.4
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (972)
+.||.|++-..-+.+--.. ...++|--..|.|||+.+|+..+...
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~---~~~~llEsPTGtGKTlslL~~aL~~~ 54 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDR---GDEAILEMPSGTGKTISLLSLILAYQ 54 (705)
T ss_pred CCCHHHHHHHHHHHHHhcc---CCceEEeCCCCCCccHHHHHHHHHHH
Confidence 3689999877766644332 23478889999999999998887643
No 281
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.08 E-value=9.6 Score=42.57 Aligned_cols=45 Identities=31% Similarity=0.769 Sum_probs=36.4
Q ss_pred cccccCCCCC------CCcccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 684 AICCVCSDPP------EDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 684 ~~C~iC~d~~------~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
..|.+|.+.. ..|-+..|||.+|..|+..++......|| -||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cp--fcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCP--FCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeecc--CCCCcc
Confidence 4688887654 34777789999999999999988888885 788774
No 282
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=51.97 E-value=70 Score=27.17 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=40.7
Q ss_pred eEEEEec-chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecC
Q 002077 819 KSIVFSQ-WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 877 (972)
Q Consensus 819 KvIVFSq-ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlk 877 (972)
|+.||+. +=.....+...|++.|+.|..++-......++++.+.......+.++++.-+
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV 60 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence 4667764 3356777888899999999999988877777776666654324555555533
No 283
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=51.64 E-value=63 Score=29.12 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=38.2
Q ss_pred ceEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 818 IKSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 818 ~KvIVFSq------ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
.+|+||+. +=..-..+.+.|+..|+.|..++=....+.|+.+.+ ......+.++.+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~ 70 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE-YSNWPTFPQLYVN 70 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH-HhCCCCCCEEEEC
Confidence 39999987 555778889999999999999986555544544443 3333344444444
No 284
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=49.13 E-value=62 Score=32.01 Aligned_cols=86 Identities=17% Similarity=0.104 Sum_probs=56.0
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCc--EEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQ--YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~--~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
.|=++||.-.+...+-..+...|+. +..=.|....-.-.+.++.|.+||.++++++-+...
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~----------------- 65 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGI----------------- 65 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES-------------------
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCC-----------------
Confidence 5779999999999888888887555 566667766667778999999999998887664443
Q ss_pred CCCCChHHHHhHhhcccCCcccEEEEEEe
Q 002077 897 WWNPTTEDQAVDRAHRIGQTRPVTVTRLT 925 (972)
Q Consensus 897 ~WNp~~e~QAigRi~RiGQ~k~V~V~rli 925 (972)
=||....++.-|+.|- |||.+++-=
T Consensus 66 -~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 66 -GDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred -CCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 4677777777777654 898887643
No 285
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=47.50 E-value=27 Score=42.00 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=35.0
Q ss_pred cCchhHHHHHHHHHHhhh-----cCCCccCceeecCCCChhHHHHHHHHH
Q 002077 274 NLLKHQKIALAWMLQKET-----RSLHCLGGILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~-----~~~~~~GGILADdmGLGKTiqaIali~ 318 (972)
......++++.|.+.+-. ....++|.||.-..|.|||+.|-|+..
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 366778888888876554 223567889999999999999888875
No 286
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=46.57 E-value=38 Score=38.35 Aligned_cols=58 Identities=12% Similarity=-0.001 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC--CCcEEEE
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--CIQYRRL 847 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~--gi~~~~l 847 (972)
.++|-+.+.+-+...++.|. .|.|-|.-+++.--|...|+++ ++....+
T Consensus 126 GaGKTEMif~~i~~al~~G~-----------------------------~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 126 GAGKTEMIFQGIEQALNQGG-----------------------------RVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred CCCchhhhHHHHHHHHhcCC-----------------------------eEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 67788888888888888776 9999999999988888888876 6777888
Q ss_pred eCCCCHHHH
Q 002077 848 DGTMSLPAR 856 (972)
Q Consensus 848 dGs~s~~~R 856 (972)
+|.-+..-|
T Consensus 177 yg~S~~~fr 185 (441)
T COG4098 177 YGDSDSYFR 185 (441)
T ss_pred ecCCchhcc
Confidence 888766555
No 287
>PRK14873 primosome assembly protein PriA; Provisional
Probab=45.81 E-value=86 Score=39.31 Aligned_cols=76 Identities=13% Similarity=0.028 Sum_probs=65.8
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC-C-CcEEEE
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-C-IQYRRL 847 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~-g-i~~~~l 847 (972)
.|.|-+..++++...+..|. .+||...-......+...|+.. | -.++.+
T Consensus 170 GSGKTevyl~~i~~~l~~Gk-----------------------------~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~l 220 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGR-----------------------------GALVVVPDQRDVDRLEAALRALLGAGDVAVL 220 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCC-----------------------------eEEEEecchhhHHHHHHHHHHHcCCCcEEEE
Confidence 57899999999999999887 8999999888888888888865 4 678999
Q ss_pred eCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 848 DGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 848 dGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
++.++..+|.+.......+ +.+|+|.+
T Consensus 221 hS~l~~~~R~~~w~~~~~G-~~~IViGt 247 (665)
T PRK14873 221 SAGLGPADRYRRWLAVLRG-QARVVVGT 247 (665)
T ss_pred CCCCCHHHHHHHHHHHhCC-CCcEEEEc
Confidence 9999999999998888765 77777766
No 288
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=44.36 E-value=13 Score=46.57 Aligned_cols=47 Identities=17% Similarity=0.601 Sum_probs=34.7
Q ss_pred cccccccCCCCCC-------CcccccCCcchhhhhHhhhhc-CCCCCCCCccccccc
Q 002077 682 SSAICCVCSDPPE-------DSVVTMCGHVFCYQCASEYIT-GDDNMCPAPRCKEQL 730 (972)
Q Consensus 682 ~~~~C~iC~d~~~-------~~vit~CgH~fC~~Ci~~~~~-~~~~~cp~~~Cr~~l 730 (972)
+.++|+||...+. ...-..|.|-|-..|+-.|+. .....|| .||..+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CP--lCRsei 1522 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCP--LCRSEI 1522 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCC--cccccc
Confidence 5789999964332 223446999999999999986 4567999 677554
No 289
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=43.89 E-value=70 Score=39.23 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=33.9
Q ss_pred CCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 266 ~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
.|... .....|||+.-..-|-... ++--.+.=..-+|||..++..|.+
T Consensus 9 ~pG~w-~~~~~Py~~eimd~~~~~~-----v~~Vv~~k~aQ~GkT~~~~n~~g~ 56 (557)
T PF05876_consen 9 EPGPW-RTDRTPYLREIMDALSDPS-----VREVVVMKSAQVGKTELLLNWIGY 56 (557)
T ss_pred CCCCC-CCCCChhHHHHHHhcCCcC-----ccEEEEEEcchhhHhHHHHhhceE
Confidence 34443 6689999998887776433 333567777789999987777764
No 290
>PRK10824 glutaredoxin-4; Provisional
Probab=43.72 E-value=99 Score=29.63 Aligned_cols=61 Identities=7% Similarity=0.006 Sum_probs=41.0
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCC-CeeEEEEecCccc
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGN 880 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~-~~~VlLiSlkagg 880 (972)
+|+||+. +=.+-..+...|...|+.|..++=....+.| ..+.++..-+ -+.||+-..-.||
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~-~~l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIR-AELPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHH-HHHHHHhCCCCCCeEEECCEEEcC
Confidence 8999998 4457788888899999888777655444444 4566665433 4556665544454
No 291
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.94 E-value=10 Score=43.72 Aligned_cols=38 Identities=26% Similarity=0.711 Sum_probs=30.2
Q ss_pred cccccccCCCCCCCcc---c-ccCCcchhhhhHhhhhcCCCCCCC
Q 002077 682 SSAICCVCSDPPEDSV---V-TMCGHVFCYQCASEYITGDDNMCP 722 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~v---i-t~CgH~fC~~Ci~~~~~~~~~~cp 722 (972)
..+.|++|++.++..+ + +.|.|.|=..|+..|.. ..||
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scp 215 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCP 215 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcCh
Confidence 4678999999887643 4 47999999999999864 3565
No 292
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=42.85 E-value=23 Score=31.32 Aligned_cols=26 Identities=27% Similarity=0.754 Sum_probs=22.7
Q ss_pred ccccCCcchhhhhHhhhhcCCCCCCCC
Q 002077 697 VVTMCGHVFCYQCASEYITGDDNMCPA 723 (972)
Q Consensus 697 vit~CgH~fC~~Ci~~~~~~~~~~cp~ 723 (972)
+...|.|.|=..||..|+.. .+.||.
T Consensus 50 ~wG~CnHaFH~HCI~rWL~T-k~~CPl 75 (88)
T COG5194 50 VWGVCNHAFHDHCIYRWLDT-KGVCPL 75 (88)
T ss_pred EEEecchHHHHHHHHHHHhh-CCCCCC
Confidence 55789999999999999987 778983
No 293
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=41.54 E-value=1.2e+02 Score=39.52 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=56.2
Q ss_pred eEEEEecchHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL 893 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~----~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~ 893 (972)
+++|.+..+..+.-....+++ .+++...++|.++.+++.+.++.+..+ .+.|++.+.......+.+.....||+
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g-~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG-KIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC-CceEEEchHHHhhCCCCcccCCEEEe
Confidence 899999999887777666554 477888999999999999999988865 67788877655555566665555543
No 294
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=41.29 E-value=13 Score=34.45 Aligned_cols=30 Identities=47% Similarity=0.938 Sum_probs=24.0
Q ss_pred cccccccCCCCCCCc--ccccCCcchhhhhHh
Q 002077 682 SSAICCVCSDPPEDS--VVTMCGHVFCYQCAS 711 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~--vit~CgH~fC~~Ci~ 711 (972)
....|.+|..++... ++.+|||++-+.|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 356799999887654 567999999999964
No 295
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=41.20 E-value=67 Score=40.49 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=70.4
Q ss_pred CcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC-CCcEE
Q 002077 767 NEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYR 845 (972)
Q Consensus 767 ~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~-gi~~~ 845 (972)
....|.|.+..++.+.+.++.|. .+||--.-.+....+...|+.. |.++.
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~Gk-----------------------------qvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGK-----------------------------QVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCC-----------------------------EEEEEeccccchHHHHHHHHHHhCCChh
Confidence 34589999999999999999988 8999988888877777777765 88899
Q ss_pred EEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 846 RLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 846 ~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
.+++.++..+|.....+...+ +.+|+|.+-.|
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G-~~~vVIGtRSA 306 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRG-EARVVIGTRSA 306 (730)
T ss_pred hhcccCChHHHHHHHHHHhcC-CceEEEEechh
Confidence 999999999999999999876 88888877444
No 296
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=40.32 E-value=27 Score=28.03 Aligned_cols=39 Identities=26% Similarity=0.687 Sum_probs=29.6
Q ss_pred ccccCCC--CCCCcccccCC-----cchhhhhHhhhhcCC-CCCCCC
Q 002077 685 ICCVCSD--PPEDSVVTMCG-----HVFCYQCASEYITGD-DNMCPA 723 (972)
Q Consensus 685 ~C~iC~d--~~~~~vit~Cg-----H~fC~~Ci~~~~~~~-~~~cp~ 723 (972)
.|.||++ ..+.+.+.+|. |.+=..|+..|+... ...||.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~i 47 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEI 47 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCC
Confidence 4889986 55678889984 777789999999754 446774
No 297
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=39.90 E-value=1.6e+02 Score=37.33 Aligned_cols=82 Identities=18% Similarity=0.158 Sum_probs=49.2
Q ss_pred eeeEEEEcc-cccc--cccchHHHHHHHhhhhccceeeccCcCCcHHHHHHHHHHHHHHHhhhccccccCCCCcccCCCC
Q 002077 511 GWFRVVLDE-AQTI--KNHRTQVARACCSLRAKRSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 587 (972)
Q Consensus 511 ~w~rVIlDE-AH~I--KN~~t~~~ka~~~L~a~~~~i~tPi~~~~~~~~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k 587 (972)
+...|.+|| ||+= ..+.-++++-+-.|-+.--.+-|-+ ..+.++.|..++..+.--+.++.|.| .+=..
T Consensus 100 ~P~lvLvDELAHTNa~gsrh~KR~qDiEelL~aGIDV~TT~---NvQHlESLnDvV~~iTgv~VrE~VPD-----~v~d~ 171 (890)
T COG2205 100 RPALVLVDELAHTNAPGSRHPKRWQDIEELLAAGIDVYTTV---NVQHLESLNDVVAGITGVRVRETVPD-----RVFDE 171 (890)
T ss_pred CCCEEEeehhhccCCCCCCCcchhhhHHHHHHcCCeeEEee---hhhhHhHHHHHHHhccCeEEeeeCCh-----hHhcc
Confidence 456899999 6752 2334567777777655431111111 23556778888888776677765543 12223
Q ss_pred eEEEEEecCCHHH
Q 002077 588 TISLTKVDFSKEE 600 (972)
Q Consensus 588 ~~~~~~v~ls~~E 600 (972)
-..++.|+++|++
T Consensus 172 AD~v~lVDi~P~~ 184 (890)
T COG2205 172 ADEVELVDIPPDD 184 (890)
T ss_pred cCeEEEecCCHHH
Confidence 3467788888886
No 298
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=39.62 E-value=54 Score=34.27 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=27.1
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHH
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~ 318 (972)
+|-+-|+.++..++.... +-.+|.=.-|.|||...-++..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-----~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-----RVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-----SEEEEEESTTSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC-----eEEEEEECCCCCHHHHHHHHHH
Confidence 377899999999985432 1246666789999986555443
No 299
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.60 E-value=11 Score=40.96 Aligned_cols=33 Identities=33% Similarity=0.858 Sum_probs=27.2
Q ss_pred cccccCCCCCCCcccccC----CcchhhhhHhhhhcC
Q 002077 684 AICCVCSDPPEDSVVTMC----GHVFCYQCASEYITG 716 (972)
Q Consensus 684 ~~C~iC~d~~~~~vit~C----gH~fC~~Ci~~~~~~ 716 (972)
--|.+|.+.+|+.-.-.| .|-||..|-.+.|..
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 458999999998655555 899999999999864
No 300
>PF13245 AAA_19: Part of AAA domain
Probab=39.37 E-value=78 Score=27.79 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.3
Q ss_pred eeecCCCChhHHHHHHHHHhhc
Q 002077 300 ILADDQGLGKTISIIALIQMQR 321 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~~~~ 321 (972)
++--..|-|||-+++.++....
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4467889999988888887544
No 301
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=39.08 E-value=92 Score=39.58 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCceEEEcCch-hH---HHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhhccC
Q 002077 384 AAGTLVVCPAS-VL---RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447 (972)
Q Consensus 384 ~~~tLIV~P~s-Ll---~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~e~ 447 (972)
.++..||...- |. ..|...+-.|+. |+|.+....-........-..||.-+|.+.+.-++
T Consensus 121 gkgVhvVTvNdYLA~RDae~m~~l~~~LG----lsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFDY 184 (822)
T COG0653 121 GKGVHVVTVNDYLARRDAEWMGPLYEFLG----LSVGVILAGMSPEEKRAAYACDITYGTNNELGFDY 184 (822)
T ss_pred CCCcEEeeehHHhhhhCHHHHHHHHHHcC----CceeeccCCCChHHHHHHHhcCceeccccccCcch
Confidence 35567777754 43 569999999984 77766544332222334446788666665554443
No 302
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=38.97 E-value=28 Score=43.40 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.8
Q ss_pred cCceeecCCCChhHHHHHHHHH
Q 002077 297 LGGILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 297 ~GGILADdmGLGKTiqaIali~ 318 (972)
.-.|+|-+.|.|||-|.=-++.
T Consensus 272 ~vvIIcGeTGsGKTTQvPQFLY 293 (1172)
T KOG0926|consen 272 PVVIICGETGSGKTTQVPQFLY 293 (1172)
T ss_pred CeEEEecCCCCCccccchHHHH
Confidence 3369999999999998766654
No 303
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=38.81 E-value=12 Score=36.67 Aligned_cols=32 Identities=25% Similarity=0.695 Sum_probs=24.7
Q ss_pred cccccccCCCCCCC--cc-cccCC------cchhhhhHhhh
Q 002077 682 SSAICCVCSDPPED--SV-VTMCG------HVFCYQCASEY 713 (972)
Q Consensus 682 ~~~~C~iC~d~~~~--~v-it~Cg------H~fC~~Ci~~~ 713 (972)
...+|.||.+.... -| ..+|| |+||.+|+..|
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 47899999988765 33 34564 68999999988
No 304
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.40 E-value=16 Score=31.98 Aligned_cols=43 Identities=28% Similarity=0.718 Sum_probs=30.0
Q ss_pred cccCCCCCCC-c-ccccCCcchhhhhHhhhhcCC--CCCCCCccccccc
Q 002077 686 CCVCSDPPED-S-VVTMCGHVFCYQCASEYITGD--DNMCPAPRCKEQL 730 (972)
Q Consensus 686 C~iC~d~~~~-~-vit~CgH~fC~~Ci~~~~~~~--~~~cp~~~Cr~~l 730 (972)
|+-|.-|-++ | |...|.|.|=..||.+|+... +..|| .||...
T Consensus 34 Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CP--mcRq~~ 80 (84)
T KOG1493|consen 34 CPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCP--MCRQTW 80 (84)
T ss_pred CCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCC--cchhee
Confidence 4444444443 5 556899999999999998754 45677 687643
No 305
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.18 E-value=21 Score=40.84 Aligned_cols=41 Identities=24% Similarity=0.502 Sum_probs=31.1
Q ss_pred cccccccCCC---CCCCcccccCCcchhhhhHhhhhcCCC--CCCC
Q 002077 682 SSAICCVCSD---PPEDSVVTMCGHVFCYQCASEYITGDD--NMCP 722 (972)
Q Consensus 682 ~~~~C~iC~d---~~~~~vit~CgH~fC~~Ci~~~~~~~~--~~cp 722 (972)
+...|++-.+ ....|+...||||.|.+-+.....+.. ..||
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCP 378 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCP 378 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCC
Confidence 4567887653 234578899999999999999887665 5677
No 306
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=37.86 E-value=97 Score=38.11 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=16.6
Q ss_pred ceeecCCCChhHHHHHHHHH
Q 002077 299 GILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 299 GILADdmGLGKTiqaIali~ 318 (972)
-|+.-|.|-|||-|.==++.
T Consensus 69 lIviGeTGsGKSTQipQyL~ 88 (674)
T KOG0922|consen 69 LIVIGETGSGKSTQIPQYLA 88 (674)
T ss_pred EEEEcCCCCCccccHhHHHH
Confidence 48999999999998766654
No 307
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=37.31 E-value=4.1 Score=52.27 Aligned_cols=80 Identities=19% Similarity=0.154 Sum_probs=56.4
Q ss_pred EEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCC
Q 002077 820 SIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWN 899 (972)
Q Consensus 820 vIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WN 899 (972)
+++|+-+..+++.+...+. ..+.+...+...++.+|... +....+.+|.|+..++..+.++++|+
T Consensus 445 ~~~~~v~itty~~l~~~~~--------~~~~l~~~~~~~~v~DEa~~-------ikn~~s~~~~~l~~~~~~~~~~LtgT 509 (866)
T COG0553 445 VIIFDVVITTYELLRRFLV--------DHGGLKKIEWDRVVLDEAHR-------IKNDQSSEGKALQFLKALNRLDLTGT 509 (866)
T ss_pred cceeeEEechHHHHHHhhh--------hHHHHhhceeeeeehhhHHH-------HhhhhhHHHHHHHHHhhcceeeCCCC
Confidence 5788888888888888541 11112222222333333322 34577788999998899999999999
Q ss_pred CChHHHHhHhhcccCCc
Q 002077 900 PTTEDQAVDRAHRIGQT 916 (972)
Q Consensus 900 p~~e~QAigRi~RiGQ~ 916 (972)
| .+|++++.++++|.
T Consensus 510 P--len~l~eL~sl~~~ 524 (866)
T COG0553 510 P--LENRLGELWSLLQE 524 (866)
T ss_pred h--HhhhHHHHHHHHHH
Confidence 9 79999999999996
No 308
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=37.01 E-value=19 Score=40.08 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=36.5
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhc-CCCCCCCCccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYIT-GDDNMCPAPRCKEQL 730 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~-~~~~~cp~~~Cr~~l 730 (972)
..+.|.||.....-..+++|+|..|.-|--.... .....|| .|++..
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~--~CrTE~ 107 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCP--LCRTET 107 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCC--cccccc
Confidence 4678999999999899999999999999876432 2344677 577654
No 309
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=36.45 E-value=45 Score=29.85 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=31.1
Q ss_pred ceEEEcCchh-HH-HHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhh
Q 002077 386 GTLVVCPASV-LR-QWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (972)
Q Consensus 386 ~tLIV~P~sL-l~-QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~ 442 (972)
..|||||..+ .. .-...++++++. ..+.+.+-+.+...-.. ...++|+||||-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKE-NGIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 4799999865 22 356677777642 13333332222111111 35689999999765
No 310
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=36.27 E-value=82 Score=35.40 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=51.2
Q ss_pred CceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcC-----CCeeEEEEe
Q 002077 817 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-----REITVMLMS 875 (972)
Q Consensus 817 ~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~-----~~~~VlLiS 875 (972)
|++|||..-=..+-.-.+..|+..||++.|+-|+...+--.++...|+++ ..++|++++
T Consensus 76 pd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 76 PDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred CceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 45999999998888899999999999999999999888888888888742 357888888
No 311
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=35.65 E-value=1e+02 Score=39.47 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.8
Q ss_pred ceeecCCCChhHHHHHHHHH
Q 002077 299 GILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 299 GILADdmGLGKTiqaIali~ 318 (972)
.||+-+.|-|||-|.=-+++
T Consensus 68 vii~getGsGKTTqlP~~ll 87 (845)
T COG1643 68 VIIVGETGSGKTTQLPQFLL 87 (845)
T ss_pred EEEeCCCCCChHHHHHHHHH
Confidence 59999999999988766665
No 312
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=35.12 E-value=1.4e+02 Score=39.03 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=60.6
Q ss_pred eEEEEecchHHHHHHHHHHHh---C--CCcEEEEeCCCCHHHHHHHH---------------------HhhhcC---CCe
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ---H--CIQYRRLDGTMSLPARDRAV---------------------KDFNTD---REI 869 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~---~--gi~~~~ldGs~s~~~R~~~I---------------------~~F~~~---~~~ 869 (972)
-+|.++.-..++++-...+.. . .|.++.+++..+...|..+- +++-.. ...
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 456677666655555444432 2 45577888888665555432 222222 135
Q ss_pred eEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCccc
Q 002077 870 TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 870 ~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 918 (972)
.+++++|.+.-+|+++-. +.+| .||. .-....|+.||+.|-|+...
T Consensus 839 ~~i~v~Tqv~E~g~D~df-d~~~-~~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHDY-DWAI-ADPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CeEEEEeeeEEEEecccC-Ceee-eccC-cHHHHHHHhhcccccccCCC
Confidence 578889999999999764 3333 3332 22578899999999998653
No 313
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=34.97 E-value=27 Score=40.00 Aligned_cols=30 Identities=23% Similarity=1.006 Sum_probs=23.2
Q ss_pred CCcchhhhhHhhhhcCCC----------CCCCCccccccc
Q 002077 701 CGHVFCYQCASEYITGDD----------NMCPAPRCKEQL 730 (972)
Q Consensus 701 CgH~fC~~Ci~~~~~~~~----------~~cp~~~Cr~~l 730 (972)
|--..|.+|+..|+...+ .+||||.||...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 444678999999986432 489999999864
No 314
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=33.39 E-value=1.1e+02 Score=40.29 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=38.8
Q ss_pred CCceEEEcCchhH-----HHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhhc
Q 002077 384 AAGTLVVCPASVL-----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445 (972)
Q Consensus 384 ~~~tLIV~P~sLl-----~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~ 445 (972)
.....-|.|...+ .-|..-|..-. .+.+ +--|+....+...+.+.+|+|.|.+.+..
T Consensus 1186 ~~~~vyi~p~~~i~~~~~~~w~~~f~~~~----G~~~-~~l~ge~s~~lkl~~~~~vii~tpe~~d~ 1247 (1674)
T KOG0951|consen 1186 IGRAVYIAPLEEIADEQYRDWEKKFSKLL----GLRI-VKLTGETSLDLKLLQKGQVIISTPEQWDL 1247 (1674)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhhcccc----CceE-EecCCccccchHHhhhcceEEechhHHHH
Confidence 3456778897754 44776666542 3444 44455666788889999999999877643
No 315
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=33.15 E-value=29 Score=38.94 Aligned_cols=44 Identities=30% Similarity=0.753 Sum_probs=35.3
Q ss_pred cccccccCCCCCCCccccc-CCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTM-CGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~-CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
...+|++|.+.+..|+... =||+.|..|-.+. .+.||. |+.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~--Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPT--CRLPIG 91 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCc--cccccc
Confidence 3567999999999887764 5999999998753 467885 888876
No 316
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.82 E-value=15 Score=44.08 Aligned_cols=36 Identities=28% Similarity=0.763 Sum_probs=26.6
Q ss_pred ccccCCCCC----CCcccccCCcchhhhhHhhhhcCCCCCCCC
Q 002077 685 ICCVCSDPP----EDSVVTMCGHVFCYQCASEYITGDDNMCPA 723 (972)
Q Consensus 685 ~C~iC~d~~----~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~ 723 (972)
.|.||.... ..||...|||+.|..|++... ...||+
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly---n~scp~ 52 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY---NASCPT 52 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhHh---hccCCC
Confidence 578884332 468999999999999998754 346773
No 317
>PRK10689 transcription-repair coupling factor; Provisional
Probab=32.57 E-value=2e+02 Score=38.55 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=53.0
Q ss_pred eEEEEecchHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~----~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI 892 (972)
+++|.+.-+..+.-+...+.+ .++.+..+.|..+.+++.++++....+ .+.|++.+.......+++.....||
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-KIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-CCCEEEECHHHHhCCCCHhhCCEEE
Confidence 899999998887766666654 367788899999999999999888754 6778887765554445554444433
No 318
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=32.48 E-value=67 Score=28.10 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=32.2
Q ss_pred ceEEEcCchhH--HHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhh
Q 002077 386 GTLVVCPASVL--RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (972)
Q Consensus 386 ~tLIV~P~sLl--~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~ 442 (972)
..||||+...- .--+..+++.++. +.++......... .....++|+||||...
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~---~~~v~~~~~~~~~-~~~~~~~DlIitT~~l 56 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPE---IEIIDVISLRELE-EVDLDDYDLIISTVPL 56 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCC---ceEEEEEeHHHHh-hCcccCCCEEEEcccc
Confidence 37999997643 3468889998863 3332222211111 1135689999999864
No 319
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=31.60 E-value=1.3e+02 Score=30.90 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=14.1
Q ss_pred eeecCCCChhHHHHHHHHH
Q 002077 300 ILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~ 318 (972)
+..-.|+.|||-..|..+.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~ 23 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIH 23 (176)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCcCChhHHHHHHHHH
Confidence 3445799999988776664
No 320
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=30.94 E-value=1.9e+02 Score=34.46 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=16.9
Q ss_pred ceeecCCCChhHHHHHHHHHh
Q 002077 299 GILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 299 GILADdmGLGKTiqaIali~~ 319 (972)
-+|.-..|+|||-.+-|+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~ 171 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNY 171 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478889999999888777653
No 321
>PTZ00062 glutaredoxin; Provisional
Probab=30.79 E-value=2.6e+02 Score=29.56 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=42.2
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
+|+||+. +=.+...+...|++.|+.|..++=....+.|+. +.++..-+.+..+.+.-+.
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~-l~~~sg~~TvPqVfI~G~~ 178 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREE-LKVYSNWPTYPQLYVNGEL 178 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHH-HHHHhCCCCCCeEEECCEE
Confidence 8999988 445677888999999999999988776666655 5556554454444455443
No 322
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=30.57 E-value=1.8e+02 Score=29.12 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=37.2
Q ss_pred eEEEEecc-------hHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhc
Q 002077 819 KSIVFSQW-------TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT 865 (972)
Q Consensus 819 KvIVFSqf-------t~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~ 865 (972)
||+||+.. -..-..+...|+..+|.|..+|=+|..+.++++.+....
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~ 54 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGA 54 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC
Confidence 57788775 345677888999999999999999988888887665543
No 323
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=30.35 E-value=97 Score=26.46 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=30.2
Q ss_pred eEEEcCchhHHH--HHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhh
Q 002077 387 TLVVCPASVLRQ--WARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442 (972)
Q Consensus 387 tLIV~P~sLl~Q--W~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~ 442 (972)
.|+|||...-.. -...+++.++.......+-+.+... .....++|+||||...
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~dliitt~~~ 56 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSE---VIDLADADLIISTVPL 56 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccch---hhhcCCccEEEECCcc
Confidence 689999874332 3566666665321222222222111 1456789999999864
No 324
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.13 E-value=1.3e+02 Score=35.13 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=59.6
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEec-chHHHHHHHHHHHhCCCcEEEEe
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQ-WTRMLDLVENSLNQHCIQYRRLD 848 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSq-ft~~ld~L~~~L~~~gi~~~~ld 848 (972)
.++-+.++.-.+...++.|+ ++|+... |-.+..++...|++.||.+..++
T Consensus 84 fsSGmaAI~~~~l~ll~~GD-----------------------------~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d 134 (396)
T COG0626 84 FSSGMAAISTALLALLKAGD-----------------------------HVLLPDDLYGGTYRLFEKILQKFGVEVTFVD 134 (396)
T ss_pred ecCcHHHHHHHHHHhcCCCC-----------------------------EEEecCCccchHHHHHHHHHHhcCeEEEEEC
Confidence 45566666666666666555 7777766 88899999999999999998888
Q ss_pred CCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccC
Q 002077 849 GTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 914 (972)
Q Consensus 849 Gs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiG 914 (972)
.........+ ... +.+ .+|+++.+-||..+.+=|.++-|+-
T Consensus 135 ~~~~~~~~~~----~~~-~~t--------------------k~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 135 PGDDEALEAA----IKE-PNT--------------------KLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred CCChHHHHHH----hcc-cCc--------------------eEEEEeCCCCcccccccHHHHHHHH
Confidence 7764333322 221 233 3556666677776665555554443
No 325
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.21 E-value=1.3e+02 Score=26.56 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=28.1
Q ss_pred eEEEcCchh-HHH-HHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchh
Q 002077 387 TLVVCPASV-LRQ-WARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYS 441 (972)
Q Consensus 387 tLIV~P~sL-l~Q-W~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~ 441 (972)
.|||||... ..+ -...++++++.. .+...+-...-.. ..+.++|+||||-.
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~-~i~~~~~~~~~~~---~~~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKEL-GIEAEVEHTDLGS---AKASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCcEEEEEecccc---cCCCCCCEEEEchh
Confidence 799999864 233 345677766432 2222222211111 12568999999975
No 326
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=28.13 E-value=2.6e+02 Score=32.70 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=16.3
Q ss_pred eeecCCCChhHHHHHHHHHh
Q 002077 300 ILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~~ 319 (972)
+|--..|+|||-.+-|+...
T Consensus 140 ~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 140 FIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 67889999999888777653
No 327
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.80 E-value=4.2e+02 Score=27.93 Aligned_cols=135 Identities=13% Similarity=0.170 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhhccccCccchhhhhcccCCC--CCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 772 SKIRTVLDILHTQCELNTKCSIVEIHDLAGSN--GSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 772 sKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.-+..+++.+++.+.+|-.||+--..--.+.- ....-....++.+-.-.||.--=..-..-+....+++|+.++-|..
T Consensus 77 ~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLva 156 (268)
T KOG4175|consen 77 TTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVA 156 (268)
T ss_pred CcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeC
Confidence 45677888888888887766632110000000 0000000111222234455444455667788888999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
-.+.++|.+++..-.+ -+|-++| +.|.+|.--+- | ...+|-+-|+...--..|+-|=
T Consensus 157 PsTtdeRmell~~~ad---sFiYvVS-rmG~TG~~~sv-----------n-~~l~~L~qrvrk~t~dtPlAVG 213 (268)
T KOG4175|consen 157 PSTTDERMELLVEAAD---SFIYVVS-RMGVTGTRESV-----------N-EKLQSLLQRVRKATGDTPLAVG 213 (268)
T ss_pred CCChHHHHHHHHHhhc---ceEEEEE-eccccccHHHH-----------H-HHHHHHHHHHHHhcCCCceeEe
Confidence 9999999999888774 4777888 77776653221 1 3445667777666555665553
No 328
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=27.47 E-value=1.6e+02 Score=36.83 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=34.5
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhc
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (972)
....|+.|.....-+..--. ...++++=-.+|.|||+..|+.++...
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~---~~~~~~iEapTGtGKTl~yL~~al~~~ 59 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALK---GGEGLLIEAPTGTGKTLAYLLPALAYA 59 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHc---CCCcEEEECCCCccHHHHHHHHHHHHH
Confidence 44799999998777663322 223467888999999999988887644
No 329
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=26.40 E-value=48 Score=36.99 Aligned_cols=54 Identities=22% Similarity=0.570 Sum_probs=38.9
Q ss_pred cccccccccCCCCCCC---c-ccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccc
Q 002077 680 ETSSAICCVCSDPPED---S-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 680 e~~~~~C~iC~d~~~~---~-vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~ 735 (972)
|++...|+.|.++++. . -.-+||-..|.=|...+...-..+|| -||.......|
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcp--acrr~y~denv 68 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCP--ACRRKYDDENV 68 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCCh--Hhhhhccccce
Confidence 3445569999988753 1 33469999999998888777777999 68877665443
No 330
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=26.37 E-value=2.8e+02 Score=33.68 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=32.4
Q ss_pred cccCchhHHHHHHHHH---HhhhcCCCccCceeecCCCChhHHHHHHHHHhh
Q 002077 272 SVNLLKHQKIALAWML---QKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 272 ~~~LrpyQk~al~wml---~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (972)
...|.|||+..+.-+. ..++...+-.-+++-=.=|=|||-.+.+++.+.
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~ 110 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTA 110 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHH
Confidence 5679999999988776 222222222335666667889998877777653
No 331
>PRK10329 glutaredoxin-like protein; Provisional
Probab=26.01 E-value=3.5e+02 Score=23.86 Aligned_cols=55 Identities=5% Similarity=0.147 Sum_probs=38.3
Q ss_pred eEEEEecch-HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 819 KSIVFSQWT-RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 819 KvIVFSqft-~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
|+.||+.-. -.-..+...|.+.||.|..++-....+.++..... . ...+.|+++.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~-g-~~~vPvv~i~ 57 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQ-G-FRQLPVVIAG 57 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-C-CCCcCEEEEC
Confidence 788888633 45777889999999999999888766555554332 2 2356666653
No 332
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.28 E-value=3.7e+02 Score=21.73 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=35.8
Q ss_pred EEEEecch-HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEE
Q 002077 820 SIVFSQWT-RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVM 872 (972)
Q Consensus 820 vIVFSqft-~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~Vl 872 (972)
|+||+.-. ..-..+...|++.|++|..++=+...+.|+.+.+......-+.|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~ 54 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVF 54 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEE
Confidence 45666544 346778888999999999999888776676666655433233333
No 333
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=24.99 E-value=3.5e+02 Score=22.88 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=39.5
Q ss_pred eEEEEecch-HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 819 KSIVFSQWT-RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 819 KvIVFSqft-~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
++.||+.-. ..-..+...|+++||+|..++=......+.++.+ ......+.++++.-+.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~-~~g~~~vP~v~i~~~~ 61 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEE-RTGSSVVPQIFFNEKL 61 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEE
Confidence 678887753 4577888899999999999987766555554433 3333455555555443
No 334
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.63 E-value=3.2e+02 Score=32.88 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=40.9
Q ss_pred CccceeeEEEEcccccccccchHHHHHHHhhhhccceeeccCcCCcHHHHHHHHHH-HHHHHhh
Q 002077 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRSTIKIPISRNSLHGYKKLQAV-LRAIMLR 569 (972)
Q Consensus 507 L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~~~i~tPi~~~~~~~~~~L~~l-L~~~~LR 569 (972)
+.+..+|.|+|.| |+...|.. -|+.+...-+..+.|-+.|+....+.||..+ +.+++|.
T Consensus 323 ~LRqDPDvImVGE---IRD~ETAe-iavqAalTGHLVlSTlHtnda~~ai~RL~~mGv~~~~l~ 382 (500)
T COG2804 323 ILRQDPDVIMVGE---IRDLETAE-IAVQAALTGHLVLSTLHTNDAPGAITRLLEMGVEPYLLA 382 (500)
T ss_pred HhccCCCeEEEec---cCCHHHHH-HHHHHHhcCCeEeeecccCchHHHHHHHHHcCCCHHHHH
Confidence 4566688999999 77654422 2445555556677888888888999998876 5555443
No 335
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=23.70 E-value=2.3e+02 Score=35.68 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=34.5
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhc
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (972)
-+.|-.-|..|...|+..|.+ |+--..|.|||.+++-++....
T Consensus 376 ~~ildsSq~~A~qs~ltyels-------liqgppGTgkt~vtlkav~tLL 418 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTYELS-------LIQGPPGTGKTLVTLKAVDTLL 418 (1025)
T ss_pred ceeecHHHHHHHHHHhhhhhh-------eeecCCCCCceeehHHHHHHHH
Confidence 345778899999999988764 7788899999998887776543
No 336
>PHA00012 I assembly protein
Probab=23.61 E-value=82 Score=35.82 Aligned_cols=63 Identities=19% Similarity=0.032 Sum_probs=33.2
Q ss_pred eEEEEcccccccccch---HHHHHHHh-hhhcc--ceeeccCcCCcHHHHHHHHHHHHHHHhhhccccc
Q 002077 513 FRVVLDEAQTIKNHRT---QVARACCS-LRAKR--STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF 575 (972)
Q Consensus 513 ~rVIlDEAH~IKN~~t---~~~ka~~~-L~a~~--~~i~tPi~~~~~~~~~~L~~lL~~~~LRRtK~~v 575 (972)
..+||||||..-|.++ +....+.+ +...+ .+--.-++.+....-+.++.++...++|..|.+.
T Consensus 83 sLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ll~eH~v~cRRld~ 151 (361)
T PHA00012 83 GLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQAREALAEHVVYCRRLDK 151 (361)
T ss_pred cEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHHhhhheEEEEEeccc
Confidence 3799999999876543 22232222 32222 1111122223444556677777776666555543
No 337
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=23.57 E-value=1.8e+02 Score=38.02 Aligned_cols=104 Identities=19% Similarity=0.144 Sum_probs=71.8
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCC
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (972)
....|-++|++|+.-+-+- .+.++|-..|-|||+.+-..|.....
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~-------esVlV~ApTssGKTvVaeyAi~~al~---------------------------- 160 (1041)
T COG4581 116 YPFELDPFQQEAIAILERG-------ESVLVCAPTSSGKTVVAEYAIALALR---------------------------- 160 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCC-------CcEEEEccCCCCcchHHHHHHHHHHH----------------------------
Confidence 4568999999999987733 34699999999999998877764221
Q ss_pred CCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcC-chhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhh
Q 002077 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (972)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P-~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~ 429 (972)
...++.-..| +.|-.|=..+|...+.+- .--|-++.|... .
T Consensus 161 --------------------------------~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~-----I 202 (1041)
T COG4581 161 --------------------------------DGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVS-----I 202 (1041)
T ss_pred --------------------------------cCCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceeccee-----e
Confidence 1123677788 678889888888876521 112344555322 2
Q ss_pred hcCCCEEEEchhhhhccC
Q 002077 430 LAKYDVVLTTYSIVTNEV 447 (972)
Q Consensus 430 l~~~DVVItTY~~l~~e~ 447 (972)
-..+.+++.|.++|++..
T Consensus 203 N~~A~clvMTTEILRnMl 220 (1041)
T COG4581 203 NPDAPCLVMTTEILRNML 220 (1041)
T ss_pred CCCCceEEeeHHHHHHHh
Confidence 245778888889998854
No 338
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.45 E-value=4.6e+02 Score=26.70 Aligned_cols=58 Identities=9% Similarity=0.233 Sum_probs=47.3
Q ss_pred eEEEEecchHHHHHHHHHHHhC--CCcEEE-EeCCCCHHHHHHHHHhhhcCCCeeEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--CIQYRR-LDGTMSLPARDRAVKDFNTDREITVMLMSLK 877 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--gi~~~~-ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlk 877 (972)
++-++..-...++.+...|++. |+.++- .+|.+...+...+++..+.. .+.++++.+-
T Consensus 48 ~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~-~pdiv~vglG 108 (171)
T cd06533 48 RVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS-GADILFVGLG 108 (171)
T ss_pred eEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc-CCCEEEEECC
Confidence 8999999999999999999876 888665 78999888888788888865 6777777653
No 339
>PRK07952 DNA replication protein DnaC; Validated
Probab=23.37 E-value=2.5e+02 Score=30.63 Aligned_cols=43 Identities=21% Similarity=0.027 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhhhcCCC-ccCceeecCCCChhHHHHHHHHHh
Q 002077 277 KHQKIALAWMLQKETRSLH-CLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 277 pyQk~al~wml~~e~~~~~-~~GGILADdmGLGKTiqaIali~~ 319 (972)
+.|+.++..+.+--..-.. ..|-+|.-..|.|||-.+.|++..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4566677666542221111 235589999999999999888865
No 340
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.75 E-value=3.1e+02 Score=32.85 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=67.2
Q ss_pred ceEEEEecchHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHhhhc---CCCeeEEEEecCccccccCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQH---------CIQYRRLDGTMSLPARDRAVKDFNT---DREITVMLMSLKAGNLGLNM 885 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~---------gi~~~~ldGs~s~~~R~~~I~~F~~---~~~~~VlLiSlkagg~GLNL 885 (972)
.-||||-.--.-++...+.+... .+.++-++ +.+.+.+.+--.. +..-+-+++|+..+.+.|.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 47999977666665555555432 23344554 3333333222221 22233456687888766655
Q ss_pred CCCCEEEEecCCC------CCC-----------hHHHHhHhhcccCCcccEEEEEEecCCCHH
Q 002077 886 VAASHVILLDLWW------NPT-----------TEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931 (972)
Q Consensus 886 t~A~~VI~~Dp~W------Np~-----------~e~QAigRi~RiGQ~k~V~V~rli~~dTIE 931 (972)
.. .|+.+||.+ ||. .-.||.-|++|.|.+++-.-++|+++...+
T Consensus 330 dg--iv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 330 DG--IVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred cc--EEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 54 555667764 544 566999999999999999999999887544
No 341
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=22.58 E-value=3.1e+02 Score=31.85 Aligned_cols=19 Identities=21% Similarity=0.613 Sum_probs=16.0
Q ss_pred eeecCCCChhHHHHHHHHH
Q 002077 300 ILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~ 318 (972)
+|.=+.|.|||..++.++.
T Consensus 86 LI~G~pG~GKStLllq~a~ 104 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAA 104 (372)
T ss_pred EEEeCCCCCHHHHHHHHHH
Confidence 6788999999998877765
No 342
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=22.55 E-value=3e+02 Score=35.97 Aligned_cols=61 Identities=7% Similarity=0.162 Sum_probs=41.2
Q ss_pred ceEEEEecchHHHHHHHHHH----HhCC-CcEEE-EeCCCCHHHHHHHHHhhhcCCCeeEEEEecCcc
Q 002077 818 IKSIVFSQWTRMLDLVENSL----NQHC-IQYRR-LDGTMSLPARDRAVKDFNTDREITVMLMSLKAG 879 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L----~~~g-i~~~~-ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkag 879 (972)
.|+++.-.-+..+....+.| ...| ..... ++|.++.+++++++++|.++ +..||+.++.-.
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g-dfdIlitTs~FL 192 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG-DFDILITTSQFL 192 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC-CccEEEEeHHHH
Confidence 36665555554444444444 4444 33332 89999999999999999976 888888876544
No 343
>PRK10638 glutaredoxin 3; Provisional
Probab=22.55 E-value=3.5e+02 Score=23.62 Aligned_cols=56 Identities=7% Similarity=0.178 Sum_probs=37.9
Q ss_pred eEEEEecch-HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 819 KSIVFSQWT-RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 819 KvIVFSqft-~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
++.||+... .....+...|+++|+.|..++=....+.+.... +......+.++++.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~-~~~g~~~vP~i~~~ 59 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMI-KRSGRTTVPQIFID 59 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHH-HHhCCCCcCEEEEC
Confidence 688888544 467888899999999999888776655555543 33333345555544
No 344
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=22.31 E-value=1.7e+02 Score=36.02 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=53.4
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCcc
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG 879 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkag 879 (972)
=.||.|.-.+.+.-=-..|+.+||....++++++.++|..++.....+ .+++|.+|..-.
T Consensus 59 ~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g-~~klLyisPErl 118 (590)
T COG0514 59 LTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSG-QLKLLYISPERL 118 (590)
T ss_pred CEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcC-ceeEEEECchhh
Confidence 589999999988888888999999999999999999999999999976 888988886543
No 345
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=21.95 E-value=4.2e+02 Score=30.26 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=34.9
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhcc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS 322 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~ 322 (972)
.++|+|......+.+.-....-+..=|++-.-|+||+..|.++......
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4789888887777655433212334578899999999999998876544
No 346
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.78 E-value=3.1e+02 Score=32.79 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=49.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCcc
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG 879 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkag 879 (972)
.+||.+.....+.-....|...|+....+.|..+..++..++..... +.+.+++++....
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~-~~~~il~~TPe~l 112 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD-GKIKLLYVTPEKC 112 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHH
Confidence 78999999988777777888899999999999998888888888854 4778888886554
No 347
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=1.5e+02 Score=35.68 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=73.9
Q ss_pred eEEEEec-chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCcc-ccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQ-WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG-NLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSq-ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkag-g~GLNLt~A~~VI~~Dp 896 (972)
-+|||-. |.++ -.|..++++.++.|+.+.--.+..+-.++-.-|..+ ...|||.+-++- =.--.+.....||+|.|
T Consensus 554 ~~LiyIPSYfDF-VRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qg-r~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 554 GILIYIPSYFDF-VRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQG-RKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred ceEEEecchhhH-HHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhc-CceEEEEehhhhhhhhheecceeeEEEecC
Confidence 5666644 3333 346788999999999998888888777888888876 888999997663 22345677899999999
Q ss_pred CCCCChHHH---HhHhhcccCCcc--cEEEEEEecC
Q 002077 897 WWNPTTEDQ---AVDRAHRIGQTR--PVTVTRLTIR 927 (972)
Q Consensus 897 ~WNp~~e~Q---AigRi~RiGQ~k--~V~V~rli~~ 927 (972)
|-||--.-- -++|.--.|.+. .-.|.-|+++
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 999974433 334544445433 2445555554
No 348
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=21.14 E-value=47 Score=43.50 Aligned_cols=268 Identities=29% Similarity=0.454 Sum_probs=182.9
Q ss_pred ceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCcccccccCCCCCCCCCCCccccc-cc
Q 002077 299 GILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTST-RS 377 (972)
Q Consensus 299 GILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~-~~ 377 (972)
+++||+||+|||...++++...+... ++..|+.. .+
T Consensus 377 ~~~ade~~~qk~~~~l~~~l~~~~k~-------------------------------------------~~~~cS~~~~e 413 (1394)
T KOG0298|consen 377 VQCADEMGWQKTSEKLILELSDLPKL-------------------------------------------CPSCCSELVKE 413 (1394)
T ss_pred eeehhhhhccchHHHHHHHHhccccc-------------------------------------------chhhhhHHHhc
Confidence 59999999999999999998643220 00011110 11
Q ss_pred ccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCC--CChhhhcCCCEEEEchhhhhccCCCCCCCch
Q 002077 378 FSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT--KDPVELAKYDVVLTTYSIVTNEVPKQPSVDE 455 (972)
Q Consensus 378 ~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~--~~~~~l~~~DVVItTY~~l~~e~~k~~~~~~ 455 (972)
.......++||||||.+++.||-.||++|+++ .++|+.|.|.... ..+.++.+||||+|||+++++|+.-.
T Consensus 414 ~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~ht----- 486 (1394)
T KOG0298|consen 414 GENLVETGATLIICPNAILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHT----- 486 (1394)
T ss_pred ccceeecCceEEECcHHHHHHHHHHHHHhccc--cceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcc-----
Confidence 11225568899999999999999999999986 4799999997643 24678999999999999999986431
Q ss_pred hhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccceeeEEEEcccccccccchHHHHHHH
Q 002077 456 EEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACC 535 (972)
Q Consensus 456 ~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~ 535 (972)
+..|.+ . ..|. .++ .-...+||..+.|+||||||||.+....|+.++.++
T Consensus 487 --------e~~~~~-R----~lR~-----------qsr------~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~ 536 (1394)
T KOG0298|consen 487 --------EDFGSD-R----QLRH-----------QSR------YMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVR 536 (1394)
T ss_pred --------cccCCh-h----hhhc-----------ccC------CCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHH
Confidence 111100 0 0000 001 112346899999999999999999999999999999
Q ss_pred hhhhcc--ceeeccCcCCcHHHH-------------------------------HHHHHHHHHHHhhhccccccCCCCcc
Q 002077 536 SLRAKR--STIKIPISRNSLHGY-------------------------------KKLQAVLRAIMLRRTKGTFIDGQPII 582 (972)
Q Consensus 536 ~L~a~~--~~i~tPi~~~~~~~~-------------------------------~~L~~lL~~~~LRRtK~~v~~g~pi~ 582 (972)
.|.+.+ ..+||||++ -.+.| ..+..++...+.|+.|..+... +
T Consensus 537 rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~ra~~~~~~dl~~q~l~R~~k~~v~~e---l 612 (1394)
T KOG0298|consen 537 RLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLRAKCEPLLDLFKQLLWRTFKSKVEHE---L 612 (1394)
T ss_pred HhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhHHHHHH---h
Confidence 999988 455999986 32222 1233455667777777766432 6
Q ss_pred cCCCCeEEEEEecCCHHHHHHHHH----HHHHHHHHHHHHh-------h--cCCcchhHHHHHHHHHHHHhhcCCCcccc
Q 002077 583 NLPPKTISLTKVDFSKEEWAFYKK----LESDSLKKFKAFA-------D--AGTVNQNYANILLMLLRLRQACDHPLLVK 649 (972)
Q Consensus 583 ~LP~k~~~~~~v~ls~~Er~~Y~~----l~~~~~~~~~~~~-------~--~g~~~~~~~~il~~L~rLRq~c~hP~Lv~ 649 (972)
-+||..+.+....+++.|-.+|.. +..+++..+..+- . ++......+.++..|+||||+||||....
T Consensus 613 ~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~ 692 (1394)
T KOG0298|consen 613 GLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRLRQACCHPLVGN 692 (1394)
T ss_pred CCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHHHHhhccccccc
Confidence 789988877777777776666643 3344433332221 1 11122345778899999999999997765
Q ss_pred c
Q 002077 650 E 650 (972)
Q Consensus 650 ~ 650 (972)
.
T Consensus 693 ~ 693 (1394)
T KOG0298|consen 693 S 693 (1394)
T ss_pred C
Confidence 4
No 349
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.56 E-value=5.6e+02 Score=26.08 Aligned_cols=59 Identities=10% Similarity=0.211 Sum_probs=48.5
Q ss_pred eEEEEecchHHHHHHHHHHHhC--CCcEE-EEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--CIQYR-RLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--gi~~~-~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
++-++..-...++.+...|++. |+.++ ..+|-++..+.+++++..+.. .+.++++.+-+
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~-~pdiv~vglG~ 111 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS-GPDIVFVGLGA 111 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc-CCCEEEEECCC
Confidence 8889999999999999999987 77766 677878888889999999965 77777776543
No 350
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.49 E-value=1.7e+02 Score=26.22 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=30.0
Q ss_pred ceEEEcCchhH-HHH-HHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhh
Q 002077 386 GTLVVCPASVL-RQW-ARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 444 (972)
Q Consensus 386 ~tLIV~P~sLl-~QW-~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~ 444 (972)
..||||+..+- .+- ...+++.++.. .+.+.+.+..-..-. .++|+||||-+...
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~-~~~~~v~~~~~~~~~----~~~Dliitt~~l~~ 57 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKA-GLEIPVTNSAIDELP----SDADLVVTHASLTD 57 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEcchhhCC----CCCCEEEEChHHHH
Confidence 47999997542 222 44455544422 344444443322211 67999999987653
No 351
>PRK11054 helD DNA helicase IV; Provisional
Probab=20.46 E-value=1.5e+02 Score=37.33 Aligned_cols=40 Identities=25% Similarity=0.057 Sum_probs=28.1
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhc
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (972)
.+|-+-|+.+|..-. .. -.|+| --|.|||-++++-+.+..
T Consensus 195 ~~L~~~Q~~av~~~~---~~-----~lV~a-gaGSGKT~vl~~r~ayLl 234 (684)
T PRK11054 195 SPLNPSQARAVVNGE---DS-----LLVLA-GAGSGKTSVLVARAGWLL 234 (684)
T ss_pred CCCCHHHHHHHhCCC---CC-----eEEEE-eCCCCHHHHHHHHHHHHH
Confidence 469999999997432 11 12444 479999999998886543
No 352
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=20.18 E-value=1.5e+02 Score=26.25 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=27.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS 852 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s 852 (972)
++|+||+--.-.......|+..|+++..++|++.
T Consensus 53 ~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 53 EIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred cEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 8899998655566777788999998889999873
Done!