Query 002077
Match_columns 972
No_of_seqs 330 out of 2306
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 1.8E-67 6E-72 642.7 36.0 463 266-972 48-570 (644)
2 3mwy_W Chromo domain-containin 100.0 2.8E-68 9.4E-73 665.0 29.3 453 266-971 228-731 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 8.4E-65 2.9E-69 601.8 33.5 429 267-972 31-495 (500)
4 3dmq_A RNA polymerase-associat 100.0 8E-44 2.7E-48 451.3 20.0 388 272-945 151-632 (968)
5 1z5z_A Helicase of the SNF2/RA 100.0 6.7E-43 2.3E-47 381.5 23.4 253 567-972 13-266 (271)
6 1wp9_A ATP-dependent RNA helic 100.0 5.3E-41 1.8E-45 391.3 31.1 461 272-946 7-493 (494)
7 2fwr_A DNA repair protein RAD2 100.0 1.6E-36 5.3E-41 356.8 15.2 376 272-945 91-471 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 9.3E-33 3.2E-37 329.8 23.1 160 770-968 370-541 (556)
9 3tbk_A RIG-I helicase domain; 100.0 4E-32 1.4E-36 323.8 28.5 161 770-969 369-541 (555)
10 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-31 4.4E-36 339.1 30.6 149 770-951 611-771 (936)
11 4a2q_A RIG-I, retinoic acid in 100.0 9.9E-32 3.4E-36 335.8 27.1 149 770-951 611-771 (797)
12 2ykg_A Probable ATP-dependent 100.0 1.3E-28 4.5E-33 303.0 30.9 147 770-949 378-536 (696)
13 4gl2_A Interferon-induced heli 100.0 1.1E-29 3.8E-34 312.7 20.5 150 770-951 379-542 (699)
14 2oca_A DAR protein, ATP-depend 100.0 1.7E-28 5.8E-33 291.1 26.9 109 819-929 350-459 (510)
15 3hgt_A HDA1 complex subunit 3; 99.9 8.2E-27 2.8E-31 255.6 24.0 219 583-939 19-248 (328)
16 1xti_A Probable ATP-dependent 99.9 9.1E-26 3.1E-30 257.2 29.9 106 819-928 252-357 (391)
17 3h1t_A Type I site-specific re 99.9 6.3E-27 2.2E-31 282.8 19.4 107 818-925 440-558 (590)
18 1hv8_A Putative ATP-dependent 99.9 1.9E-25 6.6E-30 251.6 23.0 106 819-928 240-345 (367)
19 2z0m_A 337AA long hypothetical 99.9 2.6E-25 9.1E-30 247.7 19.5 115 818-939 221-335 (337)
20 1s2m_A Putative ATP-dependent 99.9 2.8E-24 9.5E-29 246.1 28.3 106 819-928 260-365 (400)
21 2j0s_A ATP-dependent RNA helic 99.9 1.9E-24 6.6E-29 248.4 23.1 106 819-928 278-383 (410)
22 3pey_A ATP-dependent RNA helic 99.9 3.4E-23 1.2E-27 235.5 30.6 102 818-921 244-351 (395)
23 1fuu_A Yeast initiation factor 99.9 4.3E-25 1.5E-29 251.7 10.5 106 819-928 261-366 (394)
24 3eiq_A Eukaryotic initiation f 99.9 3.7E-24 1.3E-28 245.8 17.8 106 819-928 282-387 (414)
25 2db3_A ATP-dependent RNA helic 99.9 1.5E-22 5.2E-27 235.5 26.7 104 819-926 302-405 (434)
26 3fht_A ATP-dependent RNA helic 99.9 4.5E-21 1.6E-25 219.7 35.3 100 819-920 268-373 (412)
27 2i4i_A ATP-dependent RNA helic 99.9 1.7E-22 5.8E-27 232.4 22.2 106 819-928 278-383 (417)
28 2eyq_A TRCF, transcription-rep 99.9 2.4E-20 8.1E-25 239.7 26.4 105 819-927 814-921 (1151)
29 1oyw_A RECQ helicase, ATP-depe 99.9 2.7E-20 9.2E-25 221.5 24.4 101 819-921 238-338 (523)
30 3oiy_A Reverse gyrase helicase 99.9 3.9E-20 1.3E-24 213.3 24.7 100 819-925 254-362 (414)
31 3fho_A ATP-dependent RNA helic 99.8 5.1E-21 1.8E-25 227.1 12.8 102 819-922 359-466 (508)
32 3sqw_A ATP-dependent RNA helic 99.8 1.5E-19 5.2E-24 217.8 24.3 107 818-928 289-398 (579)
33 2v1x_A ATP-dependent DNA helic 99.8 5.4E-19 1.8E-23 212.8 25.8 103 818-922 268-370 (591)
34 3i5x_A ATP-dependent RNA helic 99.8 8.5E-19 2.9E-23 210.3 25.8 107 818-928 340-449 (563)
35 2xgj_A ATP-dependent RNA helic 99.8 7.3E-19 2.5E-23 222.9 26.3 116 819-936 345-507 (1010)
36 3fmp_B ATP-dependent RNA helic 99.8 4.9E-20 1.7E-24 216.7 13.9 101 819-921 335-441 (479)
37 1gm5_A RECG; helicase, replica 99.8 1.8E-19 6.2E-24 222.0 13.1 101 819-921 580-692 (780)
38 3l9o_A ATP-dependent RNA helic 99.8 1.4E-17 4.9E-22 212.8 22.0 116 819-936 443-605 (1108)
39 2p6r_A Afuhel308 helicase; pro 99.7 5.5E-17 1.9E-21 199.9 18.2 112 819-932 244-392 (702)
40 4a4z_A Antiviral helicase SKI2 99.7 2.9E-16 9.8E-21 199.2 24.8 113 819-934 338-498 (997)
41 2va8_A SSO2462, SKI2-type heli 99.7 4.6E-16 1.6E-20 192.0 23.8 109 819-929 254-409 (715)
42 2zj8_A DNA helicase, putative 99.7 2.3E-16 8E-21 194.8 20.7 114 819-934 239-393 (720)
43 2jgn_A DBX, DDX3, ATP-dependen 99.7 2.4E-16 8.3E-21 161.8 12.5 125 770-928 29-153 (185)
44 2hjv_A ATP-dependent RNA helic 99.7 4.3E-16 1.5E-20 156.4 14.0 124 770-928 19-142 (163)
45 1t5i_A C_terminal domain of A 99.7 4.1E-16 1.4E-20 158.1 13.8 119 770-921 15-133 (172)
46 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 6E-16 2.1E-20 195.5 15.5 105 818-925 538-706 (1038)
47 2p6n_A ATP-dependent RNA helic 99.6 2.1E-16 7.3E-21 163.1 9.1 106 819-928 56-161 (191)
48 4ddu_A Reverse gyrase; topoiso 99.6 1.3E-14 4.3E-19 185.7 24.1 73 819-898 311-388 (1104)
49 1fuk_A Eukaryotic initiation f 99.6 2.2E-15 7.6E-20 151.5 12.9 124 772-930 16-139 (165)
50 1gku_B Reverse gyrase, TOP-RG; 99.6 7.9E-15 2.7E-19 187.4 20.3 72 819-897 277-352 (1054)
51 2rb4_A ATP-dependent RNA helic 99.6 1.2E-14 4E-19 147.6 14.2 107 819-929 36-148 (175)
52 1rif_A DAR protein, DNA helica 99.6 1.1E-14 3.9E-19 159.1 12.3 106 272-445 111-217 (282)
53 2yjt_D ATP-dependent RNA helic 99.3 3.7E-16 1.3E-20 158.0 0.0 101 819-921 32-132 (170)
54 3eaq_A Heat resistant RNA depe 99.5 5.1E-14 1.7E-18 147.7 13.7 124 770-928 15-138 (212)
55 1tf5_A Preprotein translocase 99.5 4.5E-12 1.5E-16 154.2 25.0 117 770-919 414-538 (844)
56 3rc3_A ATP-dependent RNA helic 99.4 1.2E-12 3.9E-17 159.2 18.8 107 819-927 322-444 (677)
57 3i32_A Heat resistant RNA depe 99.4 8.5E-13 2.9E-17 145.5 16.0 124 770-928 12-135 (300)
58 2fz4_A DNA repair protein RAD2 99.4 3.5E-13 1.2E-17 143.8 11.6 93 271-445 90-184 (237)
59 1nkt_A Preprotein translocase 99.4 3.2E-11 1.1E-15 146.7 26.8 116 771-919 443-610 (922)
60 2fsf_A Preprotein translocase 99.4 1.9E-11 6.6E-16 148.3 22.5 117 770-919 423-576 (853)
61 2v6i_A RNA helicase; membrane, 99.3 2.4E-12 8.3E-17 149.4 12.8 98 819-922 173-287 (431)
62 3b6e_A Interferon-induced heli 99.3 2.2E-12 7.7E-17 134.0 7.7 112 272-446 31-146 (216)
63 2xau_A PRE-mRNA-splicing facto 99.3 1.3E-11 4.6E-16 152.7 15.9 108 818-930 304-445 (773)
64 1yks_A Genome polyprotein [con 99.3 2.1E-11 7.1E-16 141.9 14.7 92 819-917 179-289 (440)
65 2jlq_A Serine protease subunit 99.3 4.1E-11 1.4E-15 139.8 17.3 93 819-918 190-302 (451)
66 2wv9_A Flavivirin protease NS2 99.3 2.7E-11 9.4E-16 147.4 15.0 92 819-917 412-523 (673)
67 3jux_A Protein translocase sub 99.2 1.4E-09 4.9E-14 129.7 27.8 117 770-919 456-580 (822)
68 3o8b_A HCV NS3 protease/helica 99.2 1E-11 3.5E-16 149.6 9.5 98 818-929 397-515 (666)
69 2z83_A Helicase/nucleoside tri 99.2 1.8E-11 6.1E-16 143.2 11.2 102 819-928 192-313 (459)
70 2oxc_A Probable ATP-dependent 99.2 4.1E-11 1.4E-15 126.7 12.8 108 274-445 46-155 (230)
71 1t6n_A Probable ATP-dependent 99.2 2.9E-11 1E-15 126.6 10.8 108 274-445 36-147 (220)
72 1qde_A EIF4A, translation init 99.2 4E-11 1.4E-15 125.8 11.8 107 274-445 36-144 (224)
73 2gxq_A Heat resistant RNA depe 99.2 2.4E-11 8.2E-16 125.6 10.0 108 274-445 23-133 (207)
74 2whx_A Serine protease/ntpase/ 99.2 5.9E-11 2E-15 143.5 13.8 100 819-926 357-476 (618)
75 4f92_B U5 small nuclear ribonu 99.2 1.1E-09 3.8E-14 145.3 26.2 84 843-928 1215-1308(1724)
76 1vec_A ATP-dependent RNA helic 99.1 1E-10 3.5E-15 120.9 10.7 108 274-445 25-135 (206)
77 2pl3_A Probable ATP-dependent 99.1 7.2E-11 2.5E-15 125.0 9.2 111 274-445 47-159 (236)
78 3bor_A Human initiation factor 99.1 4.1E-10 1.4E-14 119.6 12.8 107 274-445 52-162 (237)
79 4f92_B U5 small nuclear ribonu 99.1 5E-09 1.7E-13 139.1 25.3 85 843-929 380-474 (1724)
80 1wrb_A DJVLGB; RNA helicase, D 99.1 3.1E-10 1.1E-14 121.5 10.3 116 274-445 45-163 (253)
81 1q0u_A Bstdead; DEAD protein, 99.1 2.2E-10 7.6E-15 119.9 9.0 108 274-445 26-139 (219)
82 3ber_A Probable ATP-dependent 99.0 5.6E-10 1.9E-14 119.7 8.3 107 274-445 65-174 (249)
83 3iuy_A Probable ATP-dependent 99.0 1.8E-09 6.1E-14 113.6 11.5 112 274-445 42-156 (228)
84 1c4o_A DNA nucleotide excision 99.0 4.6E-09 1.6E-13 128.1 16.2 124 772-929 423-551 (664)
85 2d7d_A Uvrabc system protein B 98.9 7.2E-09 2.4E-13 126.3 16.6 124 772-929 429-557 (661)
86 3dkp_A Probable ATP-dependent 98.9 1.8E-09 6E-14 115.0 9.9 108 274-445 51-162 (245)
87 2vl7_A XPD; helicase, unknown 98.9 1.1E-07 3.7E-12 113.4 23.8 77 818-901 385-466 (540)
88 3fe2_A Probable ATP-dependent 98.8 6.3E-09 2.2E-13 110.7 7.3 112 274-445 51-165 (242)
89 3ly5_A ATP-dependent RNA helic 98.7 1.9E-08 6.4E-13 108.6 8.0 111 274-445 76-189 (262)
90 3fmo_B ATP-dependent RNA helic 98.5 5.6E-07 1.9E-11 99.1 13.2 110 274-446 114-224 (300)
91 2ecy_A TNF receptor-associated 98.3 4E-07 1.4E-11 76.6 3.3 52 682-735 14-65 (66)
92 1t1h_A Gspef-atpub14, armadill 98.2 4.3E-07 1.5E-11 79.0 2.9 50 682-733 7-56 (78)
93 2ipc_A Preprotein translocase 98.2 0.0003 1E-08 86.0 26.8 120 770-922 425-694 (997)
94 2egp_A Tripartite motif-contai 98.1 1.3E-06 4.5E-11 75.9 3.4 52 682-735 11-68 (79)
95 3lrq_A E3 ubiquitin-protein li 98.1 1.4E-06 4.8E-11 79.8 2.8 49 683-733 22-71 (100)
96 2yu4_A E3 SUMO-protein ligase 98.1 8.1E-07 2.8E-11 80.4 1.2 52 682-733 6-64 (94)
97 2ecw_A Tripartite motif-contai 98.0 2.8E-06 9.7E-11 74.7 4.2 52 682-735 18-74 (85)
98 2ysl_A Tripartite motif-contai 98.0 2.5E-06 8.5E-11 73.0 3.6 50 682-733 19-70 (73)
99 1jm7_A BRCA1, breast cancer ty 98.0 9.2E-06 3.1E-10 75.6 7.6 49 683-733 21-71 (112)
100 2kre_A Ubiquitin conjugation f 98.0 1.5E-06 5E-11 79.6 1.9 48 682-732 28-75 (100)
101 1z6u_A NP95-like ring finger p 98.0 3.8E-06 1.3E-10 82.8 5.0 49 683-733 78-126 (150)
102 2kr4_A Ubiquitin conjugation f 98.0 1.3E-06 4.6E-11 77.4 1.6 49 682-733 13-61 (85)
103 3crv_A XPD/RAD3 related DNA he 98.0 8.4E-06 2.9E-10 97.3 9.0 72 819-898 395-473 (551)
104 2ecv_A Tripartite motif-contai 98.0 4.6E-06 1.6E-10 73.3 4.5 52 682-735 18-74 (85)
105 3fl2_A E3 ubiquitin-protein li 98.0 2.9E-06 9.8E-11 80.8 3.3 48 683-732 52-99 (124)
106 2d8t_A Dactylidin, ring finger 98.0 2.4E-06 8.3E-11 72.9 2.3 50 682-734 14-63 (71)
107 1wgm_A Ubiquitin conjugation f 97.9 2.5E-06 8.5E-11 77.8 2.3 49 682-733 21-70 (98)
108 2djb_A Polycomb group ring fin 97.9 4.8E-06 1.7E-10 71.2 3.7 49 682-733 14-63 (72)
109 2ysj_A Tripartite motif-contai 97.9 4E-06 1.4E-10 69.7 3.0 42 682-723 19-62 (63)
110 2yur_A Retinoblastoma-binding 97.9 4.4E-06 1.5E-10 71.9 3.2 46 682-729 14-61 (74)
111 4ayc_A E3 ubiquitin-protein li 97.9 5.5E-06 1.9E-10 80.4 4.1 47 683-732 53-99 (138)
112 2c2l_A CHIP, carboxy terminus 97.9 2.5E-06 8.4E-11 92.5 1.5 50 682-733 207-256 (281)
113 2ecj_A Tripartite motif-contai 97.9 7.3E-06 2.5E-10 66.6 4.0 42 682-723 14-57 (58)
114 2csy_A Zinc finger protein 183 97.9 4.6E-06 1.6E-10 73.1 2.9 47 682-731 14-60 (81)
115 3ztg_A E3 ubiquitin-protein li 97.9 7.7E-06 2.6E-10 73.4 4.4 47 682-730 12-60 (92)
116 2ckl_B Ubiquitin ligase protei 97.9 8.2E-06 2.8E-10 81.6 5.0 47 683-731 54-101 (165)
117 2f42_A STIP1 homology and U-bo 97.9 3.4E-06 1.2E-10 85.0 1.9 50 682-733 105-154 (179)
118 1g25_A CDK-activating kinase a 97.9 3.9E-06 1.3E-10 70.2 2.0 49 683-733 3-56 (65)
119 3l11_A E3 ubiquitin-protein li 97.8 5.3E-06 1.8E-10 77.8 2.4 48 683-732 15-62 (115)
120 2ct2_A Tripartite motif protei 97.8 7.8E-06 2.7E-10 72.5 3.2 50 682-733 14-69 (88)
121 2y43_A E3 ubiquitin-protein li 97.8 1.4E-05 4.7E-10 72.8 4.7 47 683-732 22-69 (99)
122 3hct_A TNF receptor-associated 97.8 4.1E-06 1.4E-10 79.0 0.9 51 682-734 17-67 (118)
123 2xeu_A Ring finger protein 4; 97.8 4.8E-06 1.6E-10 69.1 0.7 49 683-734 3-58 (64)
124 3ng2_A RNF4, snurf, ring finge 97.8 5.2E-06 1.8E-10 70.6 0.9 49 682-733 9-64 (71)
125 1rmd_A RAG1; V(D)J recombinati 97.8 1E-05 3.5E-10 75.9 3.0 49 683-733 23-71 (116)
126 2ecm_A Ring finger and CHY zin 97.7 1.2E-05 4.1E-10 64.6 3.0 46 682-730 4-53 (55)
127 1chc_A Equine herpes virus-1 r 97.7 1.4E-05 4.8E-10 67.3 3.0 47 682-731 4-51 (68)
128 2ea6_A Ring finger protein 4; 97.7 6.9E-06 2.4E-10 69.2 1.0 47 682-731 14-67 (69)
129 2ckl_A Polycomb group ring fin 97.7 1.5E-05 5.2E-10 73.8 3.3 48 682-732 14-62 (108)
130 1jm7_B BARD1, BRCA1-associated 97.7 3.7E-05 1.3E-09 72.3 5.9 45 682-731 21-66 (117)
131 2y1n_A E3 ubiquitin-protein li 97.7 2E-05 6.9E-10 88.4 4.5 51 682-734 331-381 (389)
132 1e4u_A Transcriptional repress 97.6 3.3E-05 1.1E-09 67.2 4.4 50 682-733 10-63 (78)
133 1iym_A EL5; ring-H2 finger, ub 97.6 3.3E-05 1.1E-09 62.0 3.7 46 682-730 4-53 (55)
134 2ect_A Ring finger protein 126 97.6 3E-05 1E-09 67.2 3.6 49 682-733 14-65 (78)
135 2ecn_A Ring finger protein 141 97.6 1.7E-05 5.9E-10 67.2 2.0 47 682-732 14-60 (70)
136 3htk_C E3 SUMO-protein ligase 97.6 1.4E-05 4.9E-10 84.4 1.7 52 682-733 180-233 (267)
137 3knv_A TNF receptor-associated 97.6 1.3E-05 4.5E-10 78.0 1.0 47 682-730 30-76 (141)
138 1v87_A Deltex protein 2; ring- 97.6 2.8E-05 9.5E-10 72.6 2.8 48 683-732 25-94 (114)
139 1bor_A Transcription factor PM 97.5 3.8E-05 1.3E-09 62.3 2.7 44 682-731 5-48 (56)
140 2kiz_A E3 ubiquitin-protein li 97.5 4.6E-05 1.6E-09 64.3 3.1 48 682-732 13-63 (69)
141 2l0b_A E3 ubiquitin-protein li 97.5 3.9E-05 1.3E-09 68.7 2.4 47 682-731 39-88 (91)
142 2ep4_A Ring finger protein 24; 97.4 6.3E-05 2.2E-09 64.4 3.1 48 682-732 14-64 (74)
143 1x4j_A Ring finger protein 38; 97.4 3.8E-05 1.3E-09 66.1 1.5 48 682-732 22-72 (75)
144 3hcs_A TNF receptor-associated 97.4 3.5E-05 1.2E-09 77.3 0.9 51 682-734 17-67 (170)
145 4ic3_A E3 ubiquitin-protein li 97.3 9.4E-05 3.2E-09 63.6 2.4 43 683-732 24-67 (74)
146 2ecg_A Baculoviral IAP repeat- 97.2 0.00016 5.4E-09 62.3 3.5 43 683-732 25-68 (75)
147 1wim_A KIAA0161 protein; ring 97.2 9.1E-05 3.1E-09 66.7 1.3 52 682-733 4-67 (94)
148 4ap4_A E3 ubiquitin ligase RNF 97.2 8.7E-05 3E-09 70.8 1.2 51 682-735 6-63 (133)
149 2bay_A PRE-mRNA splicing facto 97.2 0.00012 4.2E-09 60.5 1.9 48 683-733 3-51 (61)
150 3llm_A ATP-dependent RNA helic 97.1 0.0014 4.9E-08 68.8 9.8 40 272-318 59-98 (235)
151 2vje_B MDM4 protein; proto-onc 97.1 0.0002 6.7E-09 59.6 2.5 49 681-732 5-56 (63)
152 2ecl_A Ring-box protein 2; RNF 97.1 0.0003 1E-08 61.5 3.5 48 682-732 14-76 (81)
153 2vje_A E3 ubiquitin-protein li 97.0 0.00027 9.4E-09 58.9 2.7 47 682-731 7-56 (64)
154 2ea5_A Cell growth regulator w 97.0 0.00038 1.3E-08 58.8 3.0 45 681-732 13-58 (68)
155 2yho_A E3 ubiquitin-protein li 96.9 0.00039 1.3E-08 60.6 2.9 44 683-733 18-62 (79)
156 3dpl_R Ring-box protein 1; ubi 96.7 0.00086 2.9E-08 61.8 3.7 46 682-730 36-99 (106)
157 3t6p_A Baculoviral IAP repeat- 96.5 0.0011 3.6E-08 74.0 3.3 44 682-732 294-338 (345)
158 4ap4_A E3 ubiquitin ligase RNF 96.5 0.00053 1.8E-08 65.2 0.7 52 681-735 70-128 (133)
159 4b3f_X DNA-binding protein smu 96.0 0.017 5.8E-07 70.0 10.6 45 270-320 185-229 (646)
160 3vk6_A E3 ubiquitin-protein li 96.0 0.0026 8.7E-08 56.9 2.3 46 685-732 3-49 (101)
161 4a0k_B E3 ubiquitin-protein li 95.8 0.0015 5.3E-08 61.1 0.2 45 683-730 48-110 (117)
162 2d8s_A Cellular modulator of i 95.0 0.012 4E-07 51.3 2.9 50 682-733 14-71 (80)
163 2gk6_A Regulator of nonsense t 94.8 0.099 3.4E-06 63.0 11.3 39 274-319 180-218 (624)
164 2xzl_A ATP-dependent helicase 93.8 0.13 4.5E-06 63.7 9.7 50 818-876 676-729 (802)
165 2wjy_A Regulator of nonsense t 93.7 0.18 6.3E-06 62.3 10.6 40 273-319 355-394 (800)
166 4a15_A XPD helicase, ATP-depen 87.2 0.5 1.7E-05 56.8 5.6 98 819-921 450-579 (620)
167 1c4o_A DNA nucleotide excision 86.7 1.2 4E-05 54.1 8.5 72 273-409 7-79 (664)
168 4a15_A XPD helicase, ATP-depen 85.6 2.2 7.6E-05 51.1 10.1 42 274-319 3-45 (620)
169 3k1l_B Fancl; UBC, ring, RWD, 85.4 0.22 7.4E-06 54.5 1.0 50 682-733 307-374 (381)
170 2d7d_A Uvrabc system protein B 82.3 2.5 8.7E-05 51.0 8.7 72 273-409 11-83 (661)
171 2o0j_A Terminase, DNA packagin 82.2 3 0.0001 46.9 8.6 42 271-319 160-201 (385)
172 2ct0_A Non-SMC element 1 homol 78.9 1.5 5.3E-05 37.2 3.7 49 681-731 13-63 (74)
173 2j9r_A Thymidine kinase; TK1, 77.5 3.1 0.00011 42.8 6.2 20 300-319 32-51 (214)
174 3upu_A ATP-dependent DNA helic 77.0 3.5 0.00012 47.4 7.2 45 274-320 25-69 (459)
175 2b8t_A Thymidine kinase; deoxy 76.0 3.4 0.00012 42.8 6.1 20 300-319 16-35 (223)
176 3cpe_A Terminase, DNA packagin 71.9 11 0.00038 44.7 10.0 42 271-319 160-201 (592)
177 2jun_A Midline-1; B-BOX, TRIM, 71.4 1.8 6E-05 38.7 2.2 30 683-712 3-35 (101)
178 2orw_A Thymidine kinase; TMTK, 70.3 7 0.00024 38.9 6.6 20 300-319 7-26 (184)
179 1vyx_A ORF K3, K3RING; zinc-bi 68.6 2.7 9.4E-05 34.0 2.6 47 682-730 5-57 (60)
180 3crv_A XPD/RAD3 related DNA he 68.1 34 0.0012 40.0 13.1 80 274-420 3-83 (551)
181 2cs3_A Protein C14ORF4, MY039 60.4 5.9 0.0002 33.7 3.1 41 683-723 15-63 (93)
182 3nw0_A Non-structural maintena 59.1 26 0.00089 36.5 8.6 62 669-732 162-229 (238)
183 1gm5_A RECG; helicase, replica 58.7 28 0.00096 42.7 10.1 74 819-893 419-496 (780)
184 3ipz_A Monothiol glutaredoxin- 53.9 37 0.0013 30.4 7.7 58 819-877 19-82 (109)
185 1w4r_A Thymidine kinase; type 52.3 9.8 0.00034 38.5 3.8 19 300-318 24-42 (195)
186 3e2i_A Thymidine kinase; Zn-bi 52.2 18 0.00062 37.1 5.9 19 300-318 32-50 (219)
187 2l82_A Designed protein OR32; 51.8 52 0.0018 29.5 7.9 48 819-866 4-51 (162)
188 3vkw_A Replicase large subunit 49.7 15 0.00051 42.0 5.2 20 386-405 186-206 (446)
189 3gx8_A Monothiol glutaredoxin- 49.0 53 0.0018 30.1 8.1 59 819-878 17-84 (121)
190 1u6t_A SH3 domain-binding glut 48.4 23 0.00079 32.9 5.4 45 820-864 2-53 (121)
191 3zyw_A Glutaredoxin-3; metal b 46.7 51 0.0017 29.7 7.5 58 819-877 17-80 (111)
192 3oiy_A Reverse gyrase helicase 45.9 59 0.002 36.0 9.5 74 819-893 66-145 (414)
193 2q5c_A NTRC family transcripti 41.0 50 0.0017 33.1 7.1 92 818-916 5-96 (196)
194 2wci_A Glutaredoxin-4; redox-a 40.4 63 0.0022 30.3 7.3 56 819-875 36-97 (135)
195 2lqo_A Putative glutaredoxin R 39.0 75 0.0026 27.6 7.1 56 819-874 5-61 (92)
196 2wem_A Glutaredoxin-related pr 38.6 80 0.0027 28.8 7.5 59 819-878 21-86 (118)
197 2yan_A Glutaredoxin-3; oxidore 38.2 75 0.0026 27.8 7.1 56 819-875 18-79 (105)
198 2wul_A Glutaredoxin related pr 36.8 91 0.0031 28.6 7.5 54 819-873 21-82 (118)
199 3a10_A Response regulator; pho 35.1 1.1E+02 0.0038 26.2 7.8 59 819-884 3-62 (116)
200 2j48_A Two-component sensor ki 34.6 54 0.0018 28.0 5.6 53 819-878 3-55 (119)
201 3e1s_A Exodeoxyribonuclease V, 34.6 52 0.0018 38.7 6.9 41 272-319 187-227 (574)
202 3i42_A Response regulator rece 34.4 43 0.0015 29.6 4.9 78 818-902 4-91 (127)
203 3cg4_A Response regulator rece 33.5 2E+02 0.007 25.4 9.7 80 817-903 7-96 (142)
204 3eqz_A Response regulator; str 31.7 1.5E+02 0.0052 26.0 8.3 27 818-844 4-30 (135)
205 1wik_A Thioredoxin-like protei 29.6 1.1E+02 0.0037 27.0 6.7 56 819-875 16-77 (109)
206 3m62_A Ubiquitin conjugation f 29.3 21 0.00073 44.3 2.4 41 682-723 890-931 (968)
207 3nhm_A Response regulator; pro 28.4 2E+02 0.0068 25.2 8.5 37 840-876 46-85 (133)
208 4ddu_A Reverse gyrase; topoiso 28.3 1.1E+02 0.0039 38.9 8.9 74 819-893 123-202 (1104)
209 1t1v_A SH3BGRL3, SH3 domain-bi 28.1 73 0.0025 27.2 5.1 57 819-875 3-67 (93)
210 2eyq_A TRCF, transcription-rep 28.0 1.4E+02 0.0048 38.3 9.7 73 819-892 654-730 (1151)
211 3hjh_A Transcription-repair-co 27.4 72 0.0025 36.7 6.3 62 819-894 384-445 (483)
212 3h8k_B Autocrine motility fact 27.0 64 0.0022 22.0 3.3 20 929-948 2-21 (28)
213 1a5t_A Delta prime, HOLB; zinc 26.6 65 0.0022 34.8 5.5 46 275-320 3-48 (334)
214 2amj_A Modulator of drug activ 26.2 47 0.0016 33.4 4.0 75 817-914 12-100 (204)
215 3h8q_A Thioredoxin reductase 3 25.8 2.5E+02 0.0086 24.8 8.5 59 819-877 18-79 (114)
216 3grc_A Sensor protein, kinase; 25.3 1.5E+02 0.005 26.5 7.0 61 818-885 7-68 (140)
217 3h5i_A Response regulator/sens 24.1 94 0.0032 28.0 5.4 79 818-902 6-92 (140)
218 2b4a_A BH3024; flavodoxin-like 23.9 3.7E+02 0.013 23.6 9.8 65 814-884 12-77 (138)
219 3g5j_A Putative ATP/GTP bindin 23.4 85 0.0029 28.4 4.9 34 819-852 91-125 (134)
220 2ct6_A SH3 domain-binding glut 23.3 1.8E+02 0.0062 25.8 7.0 45 819-863 9-60 (111)
221 3lfu_A DNA helicase II; SF1 he 22.5 96 0.0033 36.6 6.4 38 274-320 9-46 (647)
222 4dpp_A DHDPS 2, dihydrodipicol 22.1 2.1E+02 0.007 31.6 8.4 97 829-925 81-192 (360)
223 1joc_A EEA1, early endosomal a 21.9 32 0.0011 32.0 1.5 33 682-714 68-104 (125)
224 3lte_A Response regulator; str 21.9 1.2E+02 0.0041 26.7 5.6 61 818-885 7-68 (132)
225 2ko5_A Ring finger protein Z; 21.6 54 0.0018 28.9 2.7 52 682-737 27-78 (99)
226 3qmx_A Glutaredoxin A, glutare 20.6 3.7E+02 0.013 23.1 8.4 61 817-877 15-76 (99)
227 1t6n_A Probable ATP-dependent 20.4 5.1E+02 0.017 25.1 10.6 72 818-893 83-164 (220)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-67 Score=642.69 Aligned_cols=463 Identities=26% Similarity=0.362 Sum_probs=359.1
Q ss_pred CCCCcccccCchhHHHHHHHHHHhhhcC--CCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCC
Q 002077 266 LPDGLLSVNLLKHQKIALAWMLQKETRS--LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (972)
Q Consensus 266 ~P~~~~~~~LrpyQk~al~wml~~e~~~--~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (972)
+|+. +...|||||++|+.||+...... ...+||||||+||||||+|+|++|.......+
T Consensus 48 ~~p~-l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~------------------ 108 (644)
T 1z3i_X 48 VDPV-LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP------------------ 108 (644)
T ss_dssp CCHH-HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT------------------
T ss_pred eChh-hhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc------------------
Confidence 4444 36689999999999999765421 24578999999999999999999986443200
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCC
Q 002077 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (972)
Q Consensus 344 ~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r 423 (972)
......+++|||||.+|+.||.+||.+|++. .+.++.++|+.+
T Consensus 109 -----------------------------------~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~ 151 (644)
T 1z3i_X 109 -----------------------------------DCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSK 151 (644)
T ss_dssp -----------------------------------TSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCH
T ss_pred -----------------------------------cccCCCCcEEEEecHHHHHHHHHHHHHHcCC--CeeEEEEeCCCH
Confidence 0012346799999999999999999999874 466777766543
Q ss_pred CCChh----h------hcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCC
Q 002077 424 TKDPV----E------LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKK 493 (972)
Q Consensus 424 ~~~~~----~------l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k 493 (972)
..... . ...+|||||||+++.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---------------------------------------------- 185 (644)
T 1z3i_X 152 DEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---------------------------------------------- 185 (644)
T ss_dssp HHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT----------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH----------------------------------------------
Confidence 21111 1 125899999999997642
Q ss_pred CCCCCCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHH----------------
Q 002077 494 GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHG---------------- 555 (972)
Q Consensus 494 ~~~~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~---------------- 555 (972)
..|....|++|||||||+|||+.++.++++..+.+.+ .+++||++++..+.
T Consensus 186 -----------~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~ 254 (644)
T 1z3i_X 186 -----------EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 254 (644)
T ss_dssp -----------TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHH
T ss_pred -----------HHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHH
Confidence 1255678999999999999999999999999999887 56699998764322
Q ss_pred -----------------------------HHHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHH
Q 002077 556 -----------------------------YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKK 606 (972)
Q Consensus 556 -----------------------------~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~ 606 (972)
...|+.++.++++||+|.++.. .||++.+.++.++|+++|+++|+.
T Consensus 255 ~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~ 329 (644)
T 1z3i_X 255 EFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKL 329 (644)
T ss_dssp HHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHH
T ss_pred HHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhh-----hCCCceEEEEEeCCCHHHHHHHHH
Confidence 2357778999999999998764 799999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhccccccc
Q 002077 607 LESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAIC 686 (972)
Q Consensus 607 l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C 686 (972)
+....... .....| .....++..+++||++|+||.++...... . +.....
T Consensus 330 ~~~~~~~~--~~~~~g---~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~-----------------------~-~~~~~~- 379 (644)
T 1z3i_X 330 FLKQAKPV--ESLQTG---KISVSSLSSITSLKKLCNHPALIYEKCLT-----------------------G-EEGFDG- 379 (644)
T ss_dssp HHHHHCGG--GSSCTT---CCCHHHHHHHHHHHHHHHCTHHHHHHHHH-----------------------T-CTTCTT-
T ss_pred HHHHHHHH--HHHhcC---ccchhHHHHHHHHHHHhCCHHHHHHHHhc-----------------------c-cchhhh-
Confidence 87644321 011122 34567889999999999999887531100 0 000000
Q ss_pred ccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCC
Q 002077 687 CVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILD 766 (972)
Q Consensus 687 ~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (972)
|+. .+|. . ......
T Consensus 380 ----------------------~~~--------~~~~---------~---------------------------~~~~~~ 393 (644)
T 1z3i_X 380 ----------------------ALD--------LFPQ---------N---------------------------YSTKAV 393 (644)
T ss_dssp ----------------------GGG--------TSCS---------S---------------------------CCSSSC
T ss_pred ----------------------HHh--------hccc---------c---------------------------cccccc
Confidence 000 0000 0 000000
Q ss_pred CcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEE
Q 002077 767 NEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRR 846 (972)
Q Consensus 767 ~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ 846 (972)
....|+|+..+..++..+.... +.|+||||+|+.++++|+..|...|+.+.+
T Consensus 394 ~~~~s~K~~~l~~ll~~~~~~~----------------------------~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 394 EPQLSGKMLVLDYILAMTRTTT----------------------------SDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHC----------------------------CCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred CcccChHHHHHHHHHHHHhhcC----------------------------CCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 1125789988888887765321 239999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHhhhcCCC-eeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEe
Q 002077 847 LDGTMSLPARDRAVKDFNTDRE-ITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLT 925 (972)
Q Consensus 847 ldGs~s~~~R~~~I~~F~~~~~-~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli 925 (972)
++|+|+.++|++++++|++++. ..|||+|+++||+||||++|++||+|||||||+.+.||+||+||+||+++|+||+|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 9999999999999999998654 468999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhcC
Q 002077 926 IRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972 (972)
Q Consensus 926 ~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~~ 972 (972)
+++||||+|+++|..|+.++..+++++.. ....++.+||+.||.+
T Consensus 526 ~~~tiEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 526 STGTIEEKILQRQAHKKALSSCVVDEEQD--VERHFSLGELRELFSL 570 (644)
T ss_dssp ETTSHHHHHHHHHHHHHHTSCCCCSCSSS--CCCSSCHHHHHHHTCC
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCCHHHHHHHhCC
Confidence 99999999999999999999999987532 3477999999999974
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-68 Score=665.00 Aligned_cols=453 Identities=27% Similarity=0.428 Sum_probs=356.5
Q ss_pred CCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCC
Q 002077 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (972)
Q Consensus 266 ~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d 345 (972)
.|+......|||||+.||.||+.... ..+||||||+||||||+|+|++|......
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~---~~~~~ILademGlGKT~~ai~~i~~l~~~---------------------- 282 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWS---KGDNGILADEMGLGKTVQTVAFISWLIFA---------------------- 282 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHT---TTCCEEECCCTTSSTTHHHHHHHHHHHHH----------------------
T ss_pred CCCccCCCCcCHHHHHHHHHHHHHhh---cCCCEEEEeCCCcchHHHHHHHHHHHHHh----------------------
Confidence 35555567899999999999997654 35789999999999999999999765432
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC
Q 002077 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (972)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~ 425 (972)
....+++|||||.+|+.||.+||.+|++ .+++++|+|..+.+
T Consensus 283 -----------------------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r 324 (800)
T 3mwy_W 283 -----------------------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSR 324 (800)
T ss_dssp -----------------------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHH
T ss_pred -----------------------------------cCCCCCEEEEECchHHHHHHHHHHHHCC---CceEEEEeCCHHHH
Confidence 0234679999999999999999999997 69999999987533
Q ss_pred Ch--------------hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCC
Q 002077 426 DP--------------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG 491 (972)
Q Consensus 426 ~~--------------~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~ 491 (972)
.. ....++|||||||+++.++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------- 360 (800)
T 3mwy_W 325 DTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------- 360 (800)
T ss_dssp HHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--------------------------------------------
T ss_pred HHHHHHHhhccccccccccccCCEEEecHHHHHhhH--------------------------------------------
Confidence 21 23457999999999997631
Q ss_pred CCCCCCCCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHH--------------
Q 002077 492 KKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHG-------------- 555 (972)
Q Consensus 492 ~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~-------------- 555 (972)
..|..+.|++|||||||++||+.++.++++..+.+.+ .+++||++++..+.
T Consensus 361 -------------~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~ 427 (800)
T 3mwy_W 361 -------------AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTI 427 (800)
T ss_dssp -------------HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC--
T ss_pred -------------HHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCc
Confidence 1255678999999999999999999999999998887 66799998876543
Q ss_pred ----------------HHHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Q 002077 556 ----------------YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFA 619 (972)
Q Consensus 556 ----------------~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~ 619 (972)
...|+.+++++++||+|.++.. .||++.+.++.|+|++.|+++|..+.......+....
T Consensus 428 ~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~ 502 (800)
T 3mwy_W 428 DQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA 502 (800)
T ss_dssp -------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC------
T ss_pred hhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhh-----ccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 3557778899999999999864 7999999999999999999999988765433222111
Q ss_pred hcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccc
Q 002077 620 DAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVT 699 (972)
Q Consensus 620 ~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit 699 (972)
......++..+++||++|+||.++........ ..+..
T Consensus 503 -----~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~--------~~~~~------------------------------ 539 (800)
T 3mwy_W 503 -----KGGHFSLLNIMNELKKASNHPYLFDNAEERVL--------QKFGD------------------------------ 539 (800)
T ss_dssp ---------CTHHHHHHHHHHHHHCGGGSSSHHHHHC--------CCC--------------------------------
T ss_pred -----ccchhhHHHHHHHHHHHhcChhhhcchHHHHH--------Hhccc------------------------------
Confidence 12334678899999999999999864211000 00000
Q ss_pred cCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHH
Q 002077 700 MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLD 779 (972)
Q Consensus 700 ~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e 779 (972)
+..--..... .....|+|+..|.+
T Consensus 540 --~~~~~~~~~~------------------------------------------------------~l~~~s~K~~~L~~ 563 (800)
T 3mwy_W 540 --GKMTRENVLR------------------------------------------------------GLIMSSGKMVLLDQ 563 (800)
T ss_dssp ----CCSHHHHH------------------------------------------------------HHHHTCHHHHHHHH
T ss_pred --ccccHHHHHH------------------------------------------------------HhhhcChHHHHHHH
Confidence 0000000000 00125889999999
Q ss_pred HHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q 002077 780 ILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRA 859 (972)
Q Consensus 780 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~ 859 (972)
+|..+.+.+. |+||||||+.++++|+..|...|+++.+|+|+++..+|+++
T Consensus 564 lL~~~~~~g~-----------------------------kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~ 614 (800)
T 3mwy_W 564 LLTRLKKDGH-----------------------------RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRIS 614 (800)
T ss_dssp HHHHHTTTTC-----------------------------CEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHH
T ss_pred HHHHHhhCCC-----------------------------eEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHH
Confidence 9999887776 99999999999999999999999999999999999999999
Q ss_pred HHhhhcCC-CeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHH
Q 002077 860 VKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 938 (972)
Q Consensus 860 I~~F~~~~-~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq 938 (972)
++.|+.++ ...|||+|+++||+||||+.|++||+|||||||+.+.||+||+||+||+++|+||+|++++|||++|++++
T Consensus 615 i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~ 694 (800)
T 3mwy_W 615 IDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERA 694 (800)
T ss_dssp HHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred HHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHH
Confidence 99999843 56699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCC----ccCCCCHHHHHHhhc
Q 002077 939 DDKRKMVASAFGEDQGGG----TASRLTVEDLRYLFM 971 (972)
Q Consensus 939 ~~K~~li~~a~g~~~~~~----~~~~lt~edl~~Lf~ 971 (972)
.+|..+...+++.....+ ....++.+||..|+.
T Consensus 695 ~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 695 RKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp HHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHccCcccccccccccCCCHHHHHHHHH
Confidence 999998888886543221 125678999998863
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=8.4e-65 Score=601.80 Aligned_cols=429 Identities=32% Similarity=0.506 Sum_probs=358.0
Q ss_pred CCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCC
Q 002077 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDD 346 (972)
Q Consensus 267 P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 346 (972)
|.+ +...|+|||++|+.||+..... .+||||||+||+|||+++|+++......
T Consensus 31 p~~-~~~~L~~~Q~~~v~~l~~~~~~---~~~~ilad~~GlGKT~~ai~~i~~~~~~----------------------- 83 (500)
T 1z63_A 31 PYN-IKANLRPYQIKGFSWMRFMNKL---GFGICLADDMGLGKTLQTIAVFSDAKKE----------------------- 83 (500)
T ss_dssp CCS-CSSCCCHHHHHHHHHHHHHHHT---TCCEEECCCTTSCHHHHHHHHHHHHHHT-----------------------
T ss_pred Chh-hhccchHHHHHHHHHHHHHhhC---CCCEEEEeCCCCcHHHHHHHHHHHHHhc-----------------------
Confidence 554 4788999999999999876543 4789999999999999999998754321
Q ss_pred CCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCC
Q 002077 347 DNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD 426 (972)
Q Consensus 347 ~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~ 426 (972)
.+.+++|||||.+|+.||.+||.+|++ .+++.+|+|....
T Consensus 84 -----------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~-- 123 (500)
T 1z63_A 84 -----------------------------------NELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK-- 123 (500)
T ss_dssp -----------------------------------TCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS--
T ss_pred -----------------------------------CCCCCEEEEccHHHHHHHHHHHHHHCC---CceEEEEecCchh--
Confidence 334679999999999999999999987 6889999987632
Q ss_pred hhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCC
Q 002077 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (972)
Q Consensus 427 ~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~ 506 (972)
..+..+|||||||+++.++. .
T Consensus 124 -~~~~~~~ivi~t~~~l~~~~----------------------------------------------------------~ 144 (500)
T 1z63_A 124 -IKLEDYDIILTTYAVLLRDT----------------------------------------------------------R 144 (500)
T ss_dssp -CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------H
T ss_pred -ccccCCcEEEeeHHHHhccc----------------------------------------------------------h
Confidence 34578999999999997531 1
Q ss_pred CccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH----------------------------
Q 002077 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY---------------------------- 556 (972)
Q Consensus 507 L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~---------------------------- 556 (972)
+....|++||+||||++||..++.++++..+.+.+ .+++||+.++..+.+
T Consensus 145 l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~ 224 (500)
T 1z63_A 145 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG 224 (500)
T ss_dssp HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT
T ss_pred hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccc
Confidence 34567999999999999999999999999998766 666999987654432
Q ss_pred -----HHHHHHHHHHHhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHH
Q 002077 557 -----KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANI 631 (972)
Q Consensus 557 -----~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~i 631 (972)
..|+.+++++++||++.+.. ....||++.+..+.++|+++|+++|+.+.......+ ...........+
T Consensus 225 ~~~~~~~l~~~l~~~~lrr~k~~~~---~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~~~ 297 (500)
T 1z63_A 225 DNMAKEELKAIISPFILRRTKYDKA---IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMI 297 (500)
T ss_dssp CHHHHHHHHHHHTTTEECCCTTCHH---HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTHHHHHHH
T ss_pred cHHHHHHHHHHHhhHeeeecccccc---hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHH----HhhhcccchHHH
Confidence 45778889999999998621 124799999999999999999999998766543221 122223456778
Q ss_pred HHHHHHHHhhcCCCcccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHh
Q 002077 632 LLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCAS 711 (972)
Q Consensus 632 l~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~ 711 (972)
+..+++||++|+||.++.....
T Consensus 298 ~~~l~~lr~~~~~p~l~~~~~~---------------------------------------------------------- 319 (500)
T 1z63_A 298 LSTLLKLKQIVDHPALLKGGEQ---------------------------------------------------------- 319 (500)
T ss_dssp HHHHHHHHHHTTCTHHHHCSCC----------------------------------------------------------
T ss_pred HHHHHHHHHHhCCHHHhcCccc----------------------------------------------------------
Confidence 9999999999999987652100
Q ss_pred hhhcCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCcc
Q 002077 712 EYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKC 791 (972)
Q Consensus 712 ~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~ 791 (972)
....++|+..++++|.+....+.
T Consensus 320 -------------------------------------------------------~~~~s~K~~~l~~~l~~~~~~~~-- 342 (500)
T 1z63_A 320 -------------------------------------------------------SVRRSGKMIRTMEIIEEALDEGD-- 342 (500)
T ss_dssp -------------------------------------------------------CSTTCHHHHHHHHHHHHHHTTTC--
T ss_pred -------------------------------------------------------hhhcchhHHHHHHHHHHHHccCC--
Confidence 00157899999999999887666
Q ss_pred chhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHhhhcCCCee
Q 002077 792 SIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREIT 870 (972)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~-gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~ 870 (972)
|+||||+|+.+++.|+..|... |+.+.+++|+++.++|++++++|++++.+.
T Consensus 343 ---------------------------k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~ 395 (500)
T 1z63_A 343 ---------------------------KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVK 395 (500)
T ss_dssp ---------------------------CEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCC
T ss_pred ---------------------------cEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999986 999999999999999999999999987888
Q ss_pred EEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhc
Q 002077 871 VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFG 950 (972)
Q Consensus 871 VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g 950 (972)
|+|+|++++|+||||+.|++||++||||||..+.||+||+||+||+++|+||+|++++|+||+|++++++|..++..+++
T Consensus 396 vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~ 475 (500)
T 1z63_A 396 FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIIS 475 (500)
T ss_dssp CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGG
T ss_pred EEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccCCCCHHHHHHhhcC
Q 002077 951 EDQGGGTASRLTVEDLRYLFMV 972 (972)
Q Consensus 951 ~~~~~~~~~~lt~edl~~Lf~~ 972 (972)
.+. .....++.+||+.||++
T Consensus 476 ~~~--~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 476 SGD--SWITELSTEELRKVIEL 495 (500)
T ss_dssp STT--GGGGSSCHHHHHHHHSC
T ss_pred cCc--chhccCCHHHHHHHhcc
Confidence 753 34678999999999974
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=8e-44 Score=451.26 Aligned_cols=388 Identities=19% Similarity=0.248 Sum_probs=284.4
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
.+.|+|||+.++.||+... ..|+||||+||+|||+++++++......
T Consensus 151 ~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------------------------- 197 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLLS---------------------------- 197 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHHT----------------------------
T ss_pred CCCCcHHHHHHHHHHHHhc-----CCCEEEECCCCCcHHHHHHHHHHHHHHh----------------------------
Confidence 5789999999999999643 4678999999999999999999754422
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCC----CCh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT----KDP 427 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~----~~~ 427 (972)
+..+++|||||.+|+.||..||.+++ .+.+.+|+|.... ...
T Consensus 198 ------------------------------g~~~rvLIVvP~sLl~Qw~~E~~~~f----~l~v~v~~~~~~~~~~~~~~ 243 (968)
T 3dmq_A 198 ------------------------------GAAERVLIIVPETLQHQWLVEMLRRF----NLRFALFDDERYAEAQHDAY 243 (968)
T ss_dssp ------------------------------SSCCCEEEECCTTTHHHHHHHHHHHS----CCCCEECCHHHHHHHHHTTC
T ss_pred ------------------------------CCCCeEEEEeCHHHHHHHHHHHHHHh----CCCEEEEccchhhhhhhhcc
Confidence 33467999999999999999999888 3677788775421 112
Q ss_pred hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCC
Q 002077 428 VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL 507 (972)
Q Consensus 428 ~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L 507 (972)
..+..+||||+||+++.+.... ...+
T Consensus 244 ~~~~~~dIvI~T~~~L~~~~~~------------------------------------------------------~~~l 269 (968)
T 3dmq_A 244 NPFDTEQLVICSLDFARRSKQR------------------------------------------------------LEHL 269 (968)
T ss_dssp SSSTTCSEEEECHHHHHTSTTT------------------------------------------------------THHH
T ss_pred cccccCCEEEEcHHHHhhCHHH------------------------------------------------------HHHh
Confidence 3456789999999999753110 0124
Q ss_pred ccceeeEEEEcccccccccchH---HHHHHHhhh--hcc--ceeeccCcCCcHHHHHHHHHH------------------
Q 002077 508 AKVGWFRVVLDEAQTIKNHRTQ---VARACCSLR--AKR--STIKIPISRNSLHGYKKLQAV------------------ 562 (972)
Q Consensus 508 ~~~~w~rVIlDEAH~IKN~~t~---~~ka~~~L~--a~~--~~i~tPi~~~~~~~~~~L~~l------------------ 562 (972)
....|++|||||||+++|..+. .++++..|. +.+ .+++||+.++..+.|..+.-+
T Consensus 270 ~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~ 349 (968)
T 3dmq_A 270 CEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNY 349 (968)
T ss_dssp HTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHH
T ss_pred hhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhH
Confidence 4567999999999999987644 488888884 322 667999987766544332211
Q ss_pred ------HHH---------------------------------------------------------HHhhhccccccCCC
Q 002077 563 ------LRA---------------------------------------------------------IMLRRTKGTFIDGQ 579 (972)
Q Consensus 563 ------L~~---------------------------------------------------------~~LRRtK~~v~~g~ 579 (972)
+.. +++|+++ .
T Consensus 350 ~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r------~ 423 (968)
T 3dmq_A 350 CPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTR------N 423 (968)
T ss_dssp HHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCT------T
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhh------h
Confidence 000 0111111 1
Q ss_pred CcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccc
Q 002077 580 PIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKI 659 (972)
Q Consensus 580 pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~ 659 (972)
.+..+|.+....+.+.+++.++..|..... ......... ....+.+|......
T Consensus 424 ~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~----------~~~~~l~pe~~~~~-------- 476 (968)
T 3dmq_A 424 GVKGFPKRELHTIKLPLPTQYQTAIKVSGI---------MGARKSAED----------RARDMLYPERIYQE-------- 476 (968)
T ss_dssp TCCCCCCCCCCEEEECCCHHHHHHHHHHHH---------TTCCSSGGG----------GTHHHHCSGGGTTT--------
T ss_pred hhcccChhheEeeecCCCHHHHHHHHHHhh---------hhhhhhhHH----------HHhhhcChHHHHHH--------
Confidence 234688999999999999999988863211 000110000 00000111100000
Q ss_pred hHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccccccc
Q 002077 660 SGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKT 739 (972)
Q Consensus 660 ~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~ 739 (972)
+..
T Consensus 477 ------------------------------------------------------l~~----------------------- 479 (968)
T 3dmq_A 477 ------------------------------------------------------FEG----------------------- 479 (968)
T ss_dssp ------------------------------------------------------TTS-----------------------
T ss_pred ------------------------------------------------------hhh-----------------------
Confidence 000
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCce
Q 002077 740 TLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIK 819 (972)
Q Consensus 740 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 819 (972)
+ .......+.|+..+.++|.. ..+ .|
T Consensus 480 --------~---------------~~~~~~~~~K~~~L~~ll~~--~~~-----------------------------~k 505 (968)
T 3dmq_A 480 --------D---------------NATWWNFDPRVEWLMGYLTS--HRS-----------------------------QK 505 (968)
T ss_dssp --------S---------------SCCTTTTSHHHHHHHHHHHH--TSS-----------------------------SC
T ss_pred --------h---------------hhcccCccHHHHHHHHHHHh--CCC-----------------------------CC
Confidence 0 00011257899999999987 223 39
Q ss_pred EEEEecchHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHhhhcCC-CeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 820 SIVFSQWTRMLDLVENSLNQ-HCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 820 vIVFSqft~~ld~L~~~L~~-~gi~~~~ldGs~s~~~R~~~I~~F~~~~-~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
+||||++..+++.|...|.. .|+++..++|.|+..+|.++++.|+++. .+.||| +++++++|||++.|++||+||++
T Consensus 506 ~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv-aT~v~~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 506 VLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL-CSEIGSEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp CCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE-CSCCTTCSSCCTTCCEEECSSCC
T ss_pred EEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEE-ecchhhcCCCcccCcEEEEecCC
Confidence 99999999999999999995 5999999999999999999999999874 366655 66999999999999999999999
Q ss_pred CCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHH
Q 002077 898 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMV 945 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li 945 (972)
|||..+.|++||++|+||++.|.||+++.++|+|++|++++.+|.+++
T Consensus 585 ~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 585 FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp SSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCce
Confidence 999999999999999999999999999999999999999998887654
No 5
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=6.7e-43 Score=381.52 Aligned_cols=253 Identities=29% Similarity=0.448 Sum_probs=195.8
Q ss_pred HhhhccccccCCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCc
Q 002077 567 MLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPL 646 (972)
Q Consensus 567 ~LRRtK~~v~~g~pi~~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~ 646 (972)
-+||+|.++.. .||++.+.++.|+||++|+++|+.+.......+ ..+....+...++..+++|||+|+||.
T Consensus 13 ~~rr~k~~v~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~Lrq~~~hP~ 83 (271)
T 1z5z_A 13 GLVPRGSHMAS-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDHPA 83 (271)
T ss_dssp --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTCTH
T ss_pred cccccHHHHHh-----hCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHH----HhccccchHHHHHHHHHHHHHHcCCHH
Confidence 48999999874 899999999999999999999999887654332 222222345678999999999999998
Q ss_pred ccccccccccccchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccc
Q 002077 647 LVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRC 726 (972)
Q Consensus 647 Lv~~~~~~~~~~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~C 726 (972)
++.....
T Consensus 84 l~~~~~~------------------------------------------------------------------------- 90 (271)
T 1z5z_A 84 LLKGGEQ------------------------------------------------------------------------- 90 (271)
T ss_dssp HHHCSCC-------------------------------------------------------------------------
T ss_pred HhcCCcc-------------------------------------------------------------------------
Confidence 8752100
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCC
Q 002077 727 KEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSS 806 (972)
Q Consensus 727 r~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (972)
....++|+.+|.++|.++.+.+.
T Consensus 91 ----------------------------------------~~~~s~K~~~L~~ll~~~~~~~~----------------- 113 (271)
T 1z5z_A 91 ----------------------------------------SVRRSGKMIRTMEIIEEALDEGD----------------- 113 (271)
T ss_dssp ----------------------------------------CSTTCHHHHHHHHHHHHHHHTTC-----------------
T ss_pred ----------------------------------------ccccCHHHHHHHHHHHHHHhCCC-----------------
Confidence 00157899999999999877666
Q ss_pred ccccCCCCCCCceEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCC
Q 002077 807 AVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNM 885 (972)
Q Consensus 807 ~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~-gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNL 885 (972)
|+||||+|+.+++.|+..|... |+.+.+++|+++.++|++++++|++++++.|||+|+++||+||||
T Consensus 114 ------------kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl 181 (271)
T 1z5z_A 114 ------------KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL 181 (271)
T ss_dssp ------------CEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCC
T ss_pred ------------eEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCc
Confidence 9999999999999999999985 999999999999999999999999988888999999999999999
Q ss_pred CCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHH
Q 002077 886 VAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVED 965 (972)
Q Consensus 886 t~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~ed 965 (972)
+.|++||+|||||||+.+.||+||+||+||+++|+||+|++++||||+|++++..|..++..+++.+. ...+.++.+|
T Consensus 182 ~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~ 259 (271)
T 1z5z_A 182 TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELSTEE 259 (271)
T ss_dssp TTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTT--HHHHTSCHHH
T ss_pred ccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccCc--hhhhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998643 3457899999
Q ss_pred HHHhhcC
Q 002077 966 LRYLFMV 972 (972)
Q Consensus 966 l~~Lf~~ 972 (972)
|+.||.+
T Consensus 260 l~~l~~~ 266 (271)
T 1z5z_A 260 LRKVIEL 266 (271)
T ss_dssp HHHHHSC
T ss_pred HHHHhcc
Confidence 9999974
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.3e-41 Score=391.26 Aligned_cols=461 Identities=15% Similarity=0.127 Sum_probs=280.1
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
.++|+|||++++.|++.. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCccHHHHHHHHHHhhC--------CEEEEcCCCCCHHHHHHHHHHHHHh-----------------------------
Confidence 357999999999999832 6899999999999999999875321
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCCh-hh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE 429 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~-~~ 429 (972)
.+.+++|||||. +|+.||.+|+.+++... ..++.+++|....... ..
T Consensus 50 ------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 50 ------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp ------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEEEECSCSCHHHHHHH
T ss_pred ------------------------------cCCCeEEEEECCHHHHHHHHHHHHHHhCcc-hhheEEeeCCcchhhhhhh
Confidence 122459999997 89999999999998421 4689999997654332 23
Q ss_pred hcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCcc
Q 002077 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (972)
Q Consensus 430 l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L~~ 509 (972)
+..++|+|+||+.+.+.+.. ..+..
T Consensus 99 ~~~~~ivv~T~~~l~~~~~~-------------------------------------------------------~~~~~ 123 (494)
T 1wp9_A 99 WARAKVIVATPQTIENDLLA-------------------------------------------------------GRISL 123 (494)
T ss_dssp HHHCSEEEECHHHHHHHHHT-------------------------------------------------------TSCCT
T ss_pred ccCCCEEEecHHHHHHHHhc-------------------------------------------------------CCcch
Confidence 45799999999999764211 11334
Q ss_pred ceeeEEEEcccccccccchHHH--HHHHhhhh-cc--ceeeccCcCCcHHHHHHHHHHHHHHHhhhcccc-ccCCCCccc
Q 002077 510 VGWFRVVLDEAQTIKNHRTQVA--RACCSLRA-KR--STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGT-FIDGQPIIN 583 (972)
Q Consensus 510 ~~w~rVIlDEAH~IKN~~t~~~--ka~~~L~a-~~--~~i~tPi~~~~~~~~~~L~~lL~~~~LRRtK~~-v~~g~pi~~ 583 (972)
..|++|||||||++++..+... +.+..... .+ .+++||. ++ .+. +..++..+........ ..+..-...
T Consensus 124 ~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~-~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~ 198 (494)
T 1wp9_A 124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-ST-PEK---IMEVINNLGIEHIEYRSENSPDVRPY 198 (494)
T ss_dssp TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SS-HHH---HHHHHHHTTCCEEEECCTTSTTTGGG
T ss_pred hhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CC-cHH---HHHHHHhcChheeeccCCCcHHHHHh
Confidence 5689999999999997533222 11111111 11 6678998 22 222 3333332221111000 000000123
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcch-----hHHHHHHHHHHHHhhcCCCccccccccccc--
Q 002077 584 LPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ-----NYANILLMLLRLRQACDHPLLVKEYDFDSV-- 656 (972)
Q Consensus 584 LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~-----~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~-- 656 (972)
+.+.......+.+.+....++..+.......+......|.... ....+......+.+....+....-......
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (494)
T 1wp9_A 199 VKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAM 278 (494)
T ss_dssp CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHH
T ss_pred cCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHH
Confidence 4566677788899999999998887776666655444433211 111222222222222221110000000000
Q ss_pred -c--cchHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 657 -G--KISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 657 -~--~~~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
. ....+.........+..++..+... | ..... ....-.++..-+.+.+. .|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~---~~~~~----~~~~~~~~~~~~~~~~~---------~~~~----- 334 (494)
T 1wp9_A 279 ALKLHHAIELLETQGLSALRAYIKKLYEE---A---KAGST----KASKEIFSDKRMKKAIS---------LLVQ----- 334 (494)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---H---HTTCC----HHHHHHHTSHHHHHHHH---------HHHH-----
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh---h---ccccc----hhhhhhhhhHHHHHHHH---------HHHH-----
Confidence 0 0000001111112222222222110 0 00000 00000000000000000 0000
Q ss_pred ccccccccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCC
Q 002077 734 VVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSP 813 (972)
Q Consensus 734 ~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (972)
. ......++|+..+.++|........
T Consensus 335 -------~-----------------------~~~~~~~~k~~~l~~~l~~~~~~~~------------------------ 360 (494)
T 1wp9_A 335 -------A-----------------------KEIGLDHPKMDKLKEIIREQLQRKQ------------------------ 360 (494)
T ss_dssp -------H-----------------------HHHTCSCHHHHHHHHHHHHHHHHCT------------------------
T ss_pred -------H-----------------------HhcCCCChHHHHHHHHHHHHhccCC------------------------
Confidence 0 0001257899999999998763221
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC--------CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCC
Q 002077 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG--------TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNM 885 (972)
Q Consensus 814 ~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG--------s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNL 885 (972)
+.|+|||+++..+++.|...|...|+.+..++| +|+..+|+++++.|+++ .+.| |++++++++||||
T Consensus 361 ---~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~-~~~v-Lv~T~~~~~Gldl 435 (494)
T 1wp9_A 361 ---NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG-EFNV-LVATSVGEEGLDV 435 (494)
T ss_dssp ---TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-SCSE-EEECGGGGGGGGS
T ss_pred ---CCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcC-CceE-EEECCccccCCCc
Confidence 239999999999999999999999999999999 99999999999999986 4666 5567999999999
Q ss_pred CCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 002077 886 VAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVA 946 (972)
Q Consensus 886 t~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~ 946 (972)
++|++||++|++|||....||+||++|.|| +.+|+|+.++|+||+++..+.+|.+++.
T Consensus 436 ~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 436 PEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp TTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred hhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998 8999999999999999999999988764
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.6e-36 Score=356.76 Aligned_cols=376 Identities=17% Similarity=0.151 Sum_probs=250.9
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
...|+|||.+++.+++.. ..+||+++||+|||+++++++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------- 132 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------- 132 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH-------------------------------
T ss_pred CCCcCHHHHHHHHHHHhc-------CCEEEEeCCCCCHHHHHHHHHHHc-------------------------------
Confidence 458999999999988732 348999999999999999888631
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeE-EEEEeCCCCCCChhh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALS-VLIYHGGSRTKDPVE 429 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~-vlvy~G~~r~~~~~~ 429 (972)
.+++|||||. +|+.||.++|.+| .+. +.+++|....
T Consensus 133 --------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~~----- 170 (472)
T 2fwr_A 133 --------------------------------STPTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIKE----- 170 (472)
T ss_dssp --------------------------------CSCEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCBC-----
T ss_pred --------------------------------CCCEEEEECCHHHHHHHHHHHHhC-----CCcceEEECCCcCC-----
Confidence 1349999998 8999999999994 467 8888887643
Q ss_pred hcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCcc
Q 002077 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (972)
Q Consensus 430 l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~~~L~~ 509 (972)
..+|+|+||+.+..... ...
T Consensus 171 --~~~Ivv~T~~~l~~~~~----------------------------------------------------------~~~ 190 (472)
T 2fwr_A 171 --LKPLTVSTYDSAYVNAE----------------------------------------------------------KLG 190 (472)
T ss_dssp --CCSEEEEEHHHHHHTHH----------------------------------------------------------HHT
T ss_pred --cCCEEEEEcHHHHHHHH----------------------------------------------------------Hhc
Confidence 37899999998865210 001
Q ss_pred ceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHHHHHHHHHHHHHhhhccccccCCCCcccCCCC
Q 002077 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 587 (972)
Q Consensus 510 ~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~~~L~~lL~~~~LRRtK~~v~~g~pi~~LP~k 587 (972)
-.|++|||||||.+.+..... .+..+.+.+ .+++||...+. ....|..++.+++.++...++..+ -+++.
T Consensus 191 ~~~~liIvDEaH~~~~~~~~~--~~~~~~~~~~l~lSATp~~~~~--~~~~l~~~~~~~~~~~~~~~l~~~----~l~~~ 262 (472)
T 2fwr_A 191 NRFMLLIFDEVHHLPAESYVQ--IAQMSIAPFRLGLTATFEREDG--RHEILKEVVGGKVFELFPDSLAGK----HLAKY 262 (472)
T ss_dssp TTCSEEEEETGGGTTSTTTHH--HHHTCCCSEEEEEESCCCCTTS--GGGSHHHHTCCEEEECCHHHHTSC----CCCSE
T ss_pred CCCCEEEEECCcCCCChHHHH--HHHhcCCCeEEEEecCccCCCC--HHHHHHHHhCCeEeecCHHHHhcC----cCCCe
Confidence 138899999999999875432 333343333 56789985432 223455666666666655555332 46777
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhcC
Q 002077 588 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRL 667 (972)
Q Consensus 588 ~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l 667 (972)
....+.+++++.++..|+.+..... .+.....+. ...+.-+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~----------------~~~~~~~~~~~--------------- 307 (472)
T 2fwr_A 263 TIKRIFVPLAEDERVEYEKREKVYK----QFLRARGIT----------------LRRAEDFNKIV--------------- 307 (472)
T ss_dssp EECCEEECCCHHHHHHTTTTTHHHH----SCSSSCCCT----------------TTCCSSSTTTT---------------
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHH----HHHHhcCcc----------------ccchhhHHHHH---------------
Confidence 7777889999999999976644322 111111000 00000000000
Q ss_pred ChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccCC
Q 002077 668 PRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSD 747 (972)
Q Consensus 668 ~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~~ 747 (972)
.|.. .++ .++..+.... ...
T Consensus 308 -----------------~~~~-------------------------------~~~--~~~~~~~~~~-----~~~----- 327 (472)
T 2fwr_A 308 -----------------MASG-------------------------------YDE--RAYEALRAWE-----EAR----- 327 (472)
T ss_dssp -----------------TTTC-------------------------------CSS--SSSTTTHHHH-----HHH-----
T ss_pred -----------------HHhc-------------------------------cCH--HHHHHHHHHH-----HHH-----
Confidence 0000 000 0000000000 000
Q ss_pred CCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecch
Q 002077 748 DGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWT 827 (972)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft 827 (972)
.-....+.|+..+.++|... .+. |+|||+++.
T Consensus 328 -----------------~~~~~~~~k~~~l~~~l~~~--~~~-----------------------------k~lvF~~~~ 359 (472)
T 2fwr_A 328 -----------------RIAFNSKNKIRKLREILERH--RKD-----------------------------KIIIFTRHN 359 (472)
T ss_dssp -----------------HHHHSCSHHHHHHHHHHHHT--SSS-----------------------------CBCCBCSCH
T ss_pred -----------------HHhhcChHHHHHHHHHHHhC--CCC-----------------------------cEEEEECCH
Confidence 00001467999999888772 233 999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHh
Q 002077 828 RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAV 907 (972)
Q Consensus 828 ~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAi 907 (972)
.+++.|...|. +..++|.++..+|+++++.|+++ .+.|| ++++++++|+|++.+++||++|++|||....|++
T Consensus 360 ~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g-~~~vL-v~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~ 432 (472)
T 2fwr_A 360 ELVYRISKVFL-----IPAITHRTSREEREEILEGFRTG-RFRAI-VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRL 432 (472)
T ss_dssp HHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHS-SCSBC-BCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCC-CCCEE-EEcCchhcCcccccCcEEEEECCCCCHHHHHHHH
Confidence 99999999884 45689999999999999999985 66665 5679999999999999999999999999999999
Q ss_pred HhhcccCCc-ccEEEEEEecCCCHHHHHHHHHHHHHHHH
Q 002077 908 DRAHRIGQT-RPVTVTRLTIRDTVEDRILKLQDDKRKMV 945 (972)
Q Consensus 908 gRi~RiGQ~-k~V~V~rli~~dTIEe~Il~lq~~K~~li 945 (972)
||++|.||. +.|.||.|+.++|+|+++.+.+++|++++
T Consensus 433 GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 433 GRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp HHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred hhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 999999998 78999999999999999999998887754
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.3e-33 Score=329.81 Aligned_cols=160 Identities=17% Similarity=0.270 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC---------
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--------- 840 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~--------- 840 (972)
.++|+..|+++|.+...... +.|+|||++++.+++.|...|...
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~---------------------------~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 422 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCMEENPILNYIKPG 422 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCT---------------------------TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEE
T ss_pred CChHHHHHHHHHHHHhcCCC---------------------------CceEEEEEccHHHHHHHHHHHHhCCCcceeeee
Confidence 57899999999988763322 349999999999999999999876
Q ss_pred ---CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcc
Q 002077 841 ---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 841 ---gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k 917 (972)
|..+..++|+|+..+|.+++++|++++.+.|| ++++++++|||++++++||+||++|||....||+|| |+.+
T Consensus 423 ~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vL-vaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~ 497 (556)
T 4a2p_A 423 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLL-IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAA 497 (556)
T ss_dssp C------------------------------CCEE-EEEC-----------CEEEEETCCSCHHHHHHC-----------
T ss_pred EEEccCCcccccccCHHHHHHHHHHhcccCceEEE-EEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCC
Confidence 55566677789999999999999985577765 566999999999999999999999999999999999 6668
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHH
Q 002077 918 PVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRY 968 (972)
Q Consensus 918 ~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~ 968 (972)
++.+|.|+.++++|++ ..++..|.+++..++.+- ..+..+++..
T Consensus 498 ~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~i------~~~~~~~~~~ 541 (556)
T 4a2p_A 498 GSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI------QKWDEETFAK 541 (556)
T ss_dssp -CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHH------HTSCHHHHHH
T ss_pred CceEEEEEeCcchHHH-HHhhHHHHHHHHHHHHHh------hcCChHHHHH
Confidence 8999999999999999 778888998988888642 3345555543
No 9
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4e-32 Score=323.77 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=113.5
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCC--------
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHC-------- 841 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~g-------- 841 (972)
.+.|+..++++|.+....+. +.|+|||+++..+++.|...|...+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~---------------------------~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 421 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKP---------------------------ETKTILFVKTRALVDALKKWIEENPALSFLKPG 421 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCT---------------------------TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEE
T ss_pred CCHHHHHHHHHHHHHhccCC---------------------------CceEEEEeCcHHHHHHHHHHHhhCcCcCceeee
Confidence 47899999999998775443 3499999999999999999999874
Q ss_pred ----CcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcc
Q 002077 842 ----IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 842 ----i~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k 917 (972)
..+..++|+|+.++|.+++++|++++.+.||+ +++++++|||++++++||+||++|||....||+|| |+.+
T Consensus 422 ~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~ 496 (555)
T 3tbk_A 422 ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI-ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRAR 496 (555)
T ss_dssp ECCC--------------------------CCSEEE-ECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTT
T ss_pred EEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEE-EcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCC
Confidence 35556667999999999999999855777765 77999999999999999999999999999999999 7778
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHh
Q 002077 918 PVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYL 969 (972)
Q Consensus 918 ~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~L 969 (972)
++.++.|+.+++++++ ..++..|.+++..++.+- ..+..+++...
T Consensus 497 ~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~------~~~~~~~~~~~ 541 (555)
T 3tbk_A 497 DSKCFLLTSSADVIEK-EKANMIKEKIMNESILRL------QTWDEMKFGKT 541 (555)
T ss_dssp SCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHH------HHSCHHHHHHH
T ss_pred CceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHHhc------cCCChHHHHHH
Confidence 9999999999999998 677788888888887542 23455555443
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-31 Score=339.07 Aligned_cols=149 Identities=17% Similarity=0.280 Sum_probs=94.6
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC---------
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--------- 840 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~--------- 840 (972)
.++|+..|+++|.+...... +.|+|||++++.+++.|...|...
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~---------------------------~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~ 663 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCMEENPILNYIKPG 663 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCT---------------------------TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCE
T ss_pred CCHHHHHHHHHHHHHhccCC---------------------------CCeEEEEeCCHHHHHHHHHHHhhCcccccccee
Confidence 57899999999998763322 349999999999999999999987
Q ss_pred ---CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcc
Q 002077 841 ---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 841 ---gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k 917 (972)
|..+..++|+|+..+|.+++++|+.++.+.|| ++|+++++||||+.|++||+||++|||....||+|| ||.+
T Consensus 664 ~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VL-VaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~ 738 (936)
T 4a2w_A 664 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLL-IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAA 738 (936)
T ss_dssp EC----------------------------CCSEE-EEECC------CCCCSEEEEESCCSCSHHHHCC-----------
T ss_pred EEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEE-EEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCC
Confidence 55566667889999999999999984577765 577999999999999999999999999999999999 6778
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcC
Q 002077 918 PVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 951 (972)
Q Consensus 918 ~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~ 951 (972)
++.|+.|+.++|+|++.+ ++..|.+++..++..
T Consensus 739 ~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 739 GSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 899999999999999866 777788888887754
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.98 E-value=9.9e-32 Score=335.75 Aligned_cols=149 Identities=17% Similarity=0.291 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC---------
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--------- 840 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~--------- 840 (972)
.++|+..|+++|.+...... +.|+||||+++.+++.|...|...
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~---------------------------~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~ 663 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCMEENPILNYIKPG 663 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCS---------------------------SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCE
T ss_pred CChHHHHHHHHHHHHhccCC---------------------------CCeEEEEECcHHHHHHHHHHHHhCcccccccce
Confidence 57899999999988653322 349999999999999999999874
Q ss_pred ---CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcc
Q 002077 841 ---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 841 ---gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k 917 (972)
|..+..++|+|+..+|.+++++|++++.+.|| ++|+++++|||+++|++||+||++|||....||+|| |+.+
T Consensus 664 ~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vL-VaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~ 738 (797)
T 4a2q_A 664 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLL-IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAA 738 (797)
T ss_dssp EC----------------------------CCSEE-EEECC-------CCCSEEEEESCCSCHHHHHTC-----------
T ss_pred EEEecCCcccCCCCCHHHHHHHHHHhhccCCceEE-EEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCC
Confidence 56677788889999999999999985577765 566999999999999999999999999999999999 6668
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcC
Q 002077 918 PVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 951 (972)
Q Consensus 918 ~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~ 951 (972)
++.+|.|+.++++|++ ..++..|..++..++..
T Consensus 739 ~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 739 GSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 8999999999999999 77888999999888854
No 12
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.96 E-value=1.3e-28 Score=302.99 Aligned_cols=147 Identities=21% Similarity=0.293 Sum_probs=88.8
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCC----CcEE
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHC----IQYR 845 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~g----i~~~ 845 (972)
.+.|+..|.++|.+...... +.++|||+++..+++.|...|...| +.+.
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~---------------------------~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~ 430 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNP---------------------------ETITILFVKTRALVDALKNWIEGNPKLSFLKPG 430 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCT---------------------------TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEE
T ss_pred CCHHHHHHHHHHHHHhccCC---------------------------CCcEEEEeCcHHHHHHHHHHHHhCCCcccccee
Confidence 46799999999988653222 3499999999999999999999998 8999
Q ss_pred EEeC--------CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcc
Q 002077 846 RLDG--------TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 846 ~ldG--------s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k 917 (972)
.++| +|+.++|.+++++|+.++.+.|| ++|.++++|||++++++||+||++||+....||+|| +|. +
T Consensus 431 ~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vL-VaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~ 505 (696)
T 2ykg_A 431 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL-IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---R 505 (696)
T ss_dssp C-----------------------------CCSCS-EEEESSCCC---CCCSEEEEESCC--CCCC-------------C
T ss_pred EEEccCCCccccCCCHHHHHHHHHHHHhcCCccEE-EEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---C
Confidence 9955 99999999999999973477775 577999999999999999999999999999999999 774 6
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHHHHHHHHhh
Q 002077 918 PVTVTRLTIRDTVEDRILKLQDDKRKMVASAF 949 (972)
Q Consensus 918 ~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~ 949 (972)
+..++.|+.++++++.- .++..+.+++...+
T Consensus 506 ~g~~~~l~~~~~~~~~~-~~~~~~e~~~~~~~ 536 (696)
T 2ykg_A 506 GSKCFLLTSNAGVIEKE-QINMYKEKMMNDSI 536 (696)
T ss_dssp CCEEEEEESCHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCHHHHH-HHHHHHHHHHHHHH
Confidence 78889999998886543 33333333444433
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=312.70 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=116.4
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhC------CCc
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH------CIQ 843 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~------gi~ 843 (972)
.+.|+..|+++|.+...... .+.++|||+++..+++.|...|... |+.
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~--------------------------~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~ 432 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTE--------------------------ESARGIIFTKTRQSAYALSQWITENEKFAEVGVK 432 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSS--------------------------SCCCEEEECSCHHHHHHHHHHHHSSCSCC-----
T ss_pred CCHHHHHHHHHHHHHHhcCC--------------------------CCCcEEEEECcHHHHHHHHHHHHhCccccccCcc
Confidence 45677778888877554310 0239999999999999999999988 999
Q ss_pred EEEEeCC--------CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCC
Q 002077 844 YRRLDGT--------MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQ 915 (972)
Q Consensus 844 ~~~ldGs--------~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ 915 (972)
+..++|. |+..+|.++++.|+.+ ++.||+ +|.++++|||++++++||+||++|||....|++||+.|-|
T Consensus 433 ~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g-~~~VLV-aT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g- 509 (699)
T 4gl2_A 433 AHHLIGAGHSSEFKPMTQNEQKEVISKFRTG-KINLLI-ATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE- 509 (699)
T ss_dssp CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----CCSE-EECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS-
T ss_pred eEEEECCCCccCCCCCCHHHHHHHHHHHhcC-CCcEEE-EccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC-
Confidence 9999999 9999999999999975 666654 7799999999999999999999999999999999986555
Q ss_pred cccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcC
Q 002077 916 TRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 951 (972)
Q Consensus 916 ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~ 951 (972)
..++.+...++.+.....+...+.+++...+..
T Consensus 510 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (699)
T 4gl2_A 510 ---STYVLVAHSGSGVIERETVNDFREKMMYKAIHC 542 (699)
T ss_dssp ---CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777776666666666677777776654
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=1.7e-28 Score=291.10 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=100.4
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+. +..++.|...|.+.+.++..++|.|+..+|+++++.|+++ ++.|||.+..++++|+|++.+++||+++++|
T Consensus 350 ~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g-~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~ 427 (510)
T 2oca_A 350 AFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENG-KGIIIVASYGVFSTGISVKNLHHVVLAHGVK 427 (510)
T ss_dssp EEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHC-CSCEEEEEHHHHHHSCCCCSEEEEEESSCCC
T ss_pred eEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEcChhhcccccccCcEEEEeCCCC
Confidence 7888888 8888889999999988999999999999999999999976 6777776669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcc-cEEEEEEecCCC
Q 002077 899 NPTTEDQAVDRAHRIGQTR-PVTVTRLTIRDT 929 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k-~V~V~rli~~dT 929 (972)
|+....|++||++|.|+.+ .|.||.++...+
T Consensus 428 s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~ 459 (510)
T 2oca_A 428 SKIIVLQTIGRVLRKHGSKTIATVWDLIDDAG 459 (510)
T ss_dssp SCCHHHHHHHHHHTTTCCCCCCEEEEEEEECC
T ss_pred CHHHHHHHHhcccccCCCCceEEEEEeecchh
Confidence 9999999999999999988 699999998765
No 15
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.95 E-value=8.2e-27 Score=255.60 Aligned_cols=219 Identities=18% Similarity=0.139 Sum_probs=160.2
Q ss_pred cCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcc--hhHHHHHHHHHHHHhhcCCCccccc-ccccccccc
Q 002077 583 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVN--QNYANILLMLLRLRQACDHPLLVKE-YDFDSVGKI 659 (972)
Q Consensus 583 ~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~--~~~~~il~~L~rLRq~c~hP~Lv~~-~~~~~~~~~ 659 (972)
..|++.+.++.+.||+-|+++|+.+.......+..+....... .-...+..+++.||++|+||+|+.. +........
T Consensus 19 ~~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~ 98 (328)
T 3hgt_A 19 SGNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITR 98 (328)
T ss_dssp ---CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCST
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcccccc
Confidence 4499999999999999999999999876555566555432211 1134667788999999999999842 111000000
Q ss_pred hHHHhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccccccc
Q 002077 660 SGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKT 739 (972)
Q Consensus 660 ~~e~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~ 739 (972)
+...
T Consensus 99 ----------~~~~------------------------------------------------------------------ 102 (328)
T 3hgt_A 99 ----------DVPA------------------------------------------------------------------ 102 (328)
T ss_dssp ----------THHH------------------------------------------------------------------
T ss_pred ----------chhh------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCce
Q 002077 740 TLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIK 819 (972)
Q Consensus 740 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 819 (972)
.-...|+|+..|-.+|..+.+.+. |
T Consensus 103 --------------------------~l~~~SGKf~~L~~LL~~l~~~~~-----------------------------k 127 (328)
T 3hgt_A 103 --------------------------HLAENSGKFSVLRDLINLVQEYET-----------------------------E 127 (328)
T ss_dssp --------------------------HHHHTCHHHHHHHHHHHHHTTSCE-----------------------------E
T ss_pred --------------------------HHHHcCccHHHHHHHHHHHHhCCC-----------------------------E
Confidence 001168999999999998887766 9
Q ss_pred EEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccC-----CCCCCEEEEe
Q 002077 820 SIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLN-----MVAASHVILL 894 (972)
Q Consensus 820 vIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLN-----Lt~A~~VI~~ 894 (972)
||||||++.+||+||..|...|+.|.|+||++.. .+++. . +..+.++|++ .+||.|+| |+.|+.||+|
T Consensus 128 VLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~-~----~~~~~i~Llt-sag~~gin~~~~nl~~aD~VI~~ 200 (328)
T 3hgt_A 128 TAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA-N----DFSCTVHLFS-SEGINFTKYPIKSKARFDMLICL 200 (328)
T ss_dssp EEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEEE-SSCCCTTTSCCCCCSCCSEEEEC
T ss_pred EEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc-c----cCCceEEEEE-CCCCCCcCcccccCCCCCEEEEE
Confidence 9999999999999999999999999999999644 33221 1 3467888875 68888876 8999999999
Q ss_pred cCCCCCChH-HHHhHhhccc--CCcccEEEEEEecCCCHHHHHHHHHH
Q 002077 895 DLWWNPTTE-DQAVDRAHRI--GQTRPVTVTRLTIRDTVEDRILKLQD 939 (972)
Q Consensus 895 Dp~WNp~~e-~QAigRi~Ri--GQ~k~V~V~rli~~dTIEe~Il~lq~ 939 (972)
|+.|||... .||+.|+||+ ||+++|.||||++.+|||+.++.+-+
T Consensus 201 DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 201 DTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp STTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 999999998 8999999999 78999999999999999999988744
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=9.1e-26 Score=257.20 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=95.4
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
|+|||+.....++.+...|...|+.+..++|.++..+|.++++.|+++ ...||+ ++.++++|+|+..+++||++|++|
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv-~T~~~~~Gidi~~~~~Vi~~~~p~ 329 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILV-ATNLFGRGMDIERVNIAFNYDMPE 329 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-CCSEEE-ESCCCSSCBCCTTEEEEEESSCCS
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CCcEEE-ECChhhcCCCcccCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999975 556554 669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
++....|++||++|.|+...+.+ |+...
T Consensus 330 s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 357 (391)
T 1xti_A 330 DSDTYLHRVARAGRFGTKGLAIT--FVSDE 357 (391)
T ss_dssp SHHHHHHHHCBCSSSCCCCEEEE--EECSH
T ss_pred CHHHHHHhcccccCCCCceEEEE--EEccc
Confidence 99999999999999997665543 44443
No 17
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=6.3e-27 Score=282.84 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=95.1
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCc--------EEEEeCCCCHHHHHHHHHhhhcCC-CeeEEEEecCccccccCCCCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQ--------YRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAA 888 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~--------~~~ldGs~s~~~R~~~I~~F~~~~-~~~VlLiSlkagg~GLNLt~A 888 (972)
.|+||||+....++.|...|.+.+.. +..++|.++ ++|++++++|+++. ...++|++++++++|+|++.+
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v 518 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTC 518 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTE
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchhe
Confidence 39999999999999999999876543 678999985 37999999999853 477889999999999999999
Q ss_pred CEEEEecCCCCCChHHHHhHhhcccCC---cccEEEEEEe
Q 002077 889 SHVILLDLWWNPTTEDQAVDRAHRIGQ---TRPVTVTRLT 925 (972)
Q Consensus 889 ~~VI~~Dp~WNp~~e~QAigRi~RiGQ---~k~V~V~rli 925 (972)
++||+++++|++....|++||++|.|+ +..+.|+.++
T Consensus 519 ~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 519 KNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp EEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred eEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 999999999999999999999999996 4558888877
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.9e-25 Score=251.57 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=96.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.....++.+...|+..|+.+..++|.++..+|.++++.|+++ ...||+ ++.++++|+|++.+++||++|++|
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv-~T~~~~~Gid~~~~~~Vi~~~~~~ 317 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILI-ATDVMSRGIDVNDLNCVINYHLPQ 317 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEE-ECTTHHHHCCCSCCSEEEESSCCS
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC-CCeEEE-ECChhhcCCCcccCCEEEEecCCC
Confidence 999999999999999999999999999999999999999999999975 666655 669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
|+....|++||++|.|+...+.+ ++.+.
T Consensus 318 s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~ 345 (367)
T 1hv8_A 318 NPESYMHRIGRTGRAGKKGKAIS--IINRR 345 (367)
T ss_dssp CHHHHHHHSTTTCCSSSCCEEEE--EECTT
T ss_pred CHHHhhhcccccccCCCccEEEE--EEcHH
Confidence 99999999999999998775544 45555
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=2.6e-25 Score=247.68 Aligned_cols=115 Identities=18% Similarity=0.247 Sum_probs=97.8
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.++|||++....++.+...|. .+..++|.++..+|.+++++|+++ ...||+ ++.++++|+|++.+++||++|++
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv-~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG-EYDMLI-TTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT-SCSEEE-ECHHHHTTCCCCCBSEEEESSCC
T ss_pred CcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC-CCcEEE-EcCccccCCCccCCCEEEEecCC
Confidence 399999999999999988886 578999999999999999999975 566655 66999999999999999999999
Q ss_pred CCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHH
Q 002077 898 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~ 939 (972)
|++....|++||++|.||...+.++.. .+..+++.|.+...
T Consensus 295 ~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 295 QDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999888888766 55566666655443
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.93 E-value=2.8e-24 Score=246.07 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=96.2
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
|+|||++....++.+...|...|+.+..++|.++..+|.++++.|+++ ...||+ ++.++++|+|++++++||++|++|
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv-~T~~~~~Gidip~~~~Vi~~~~p~ 337 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG-KVRTLV-CSDLLTRGIDIQAVNVVINFDFPK 337 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEEE-ESSCSSSSCCCTTEEEEEESSCCS
T ss_pred cEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EcCccccCCCccCCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999975 566655 669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
++....|++||++|.|+... ++.|+.++
T Consensus 338 s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~ 365 (400)
T 1s2m_A 338 TAETYLHRIGRSGRFGHLGL--AINLINWN 365 (400)
T ss_dssp SHHHHHHHHCBSSCTTCCEE--EEEEECGG
T ss_pred CHHHHHHhcchhcCCCCCce--EEEEeccc
Confidence 99999999999999997654 44566665
No 21
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.92 E-value=1.9e-24 Score=248.40 Aligned_cols=106 Identities=20% Similarity=0.310 Sum_probs=96.1
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
|+|||++....++.+...|...|+.+..++|.++..+|.++++.|+++ ...||+ ++.++++|+|++.+++||++|++|
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv-~T~~~~~Gidi~~v~~Vi~~~~p~ 355 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG-ASRVLI-STDVWARGLDVPQVSLIINYDLPN 355 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT-SSCEEE-ECGGGSSSCCCTTEEEEEESSCCS
T ss_pred cEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC-CCCEEE-ECChhhCcCCcccCCEEEEECCCC
Confidence 999999999999999999999999999999999999999999999976 566554 779999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
++....|++||++|.|+... ++.|+.++
T Consensus 356 s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (410)
T 2j0s_A 356 NRELYIHRIGRSGRYGRKGV--AINFVKND 383 (410)
T ss_dssp SHHHHHHHHTTSSGGGCCEE--EEEEEEGG
T ss_pred CHHHHHHhcccccCCCCceE--EEEEecHH
Confidence 99999999999999997654 44456555
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.92 E-value=3.4e-23 Score=235.53 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=93.4
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.++|||+.....++.+...|+..|+.+..++|.++..+|.++++.|+++ ...| |+++.++++|+|+..+++||++|++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG-RSKV-LITTNVLARGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCCE-EEECGGGSSSCCCTTEEEEEESSCC
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC-CCCE-EEECChhhcCCCcccCCEEEEcCCC
Confidence 3999999999999999999999999999999999999999999999976 5665 4567999999999999999999999
Q ss_pred C------CCChHHHHhHhhcccCCcccEEE
Q 002077 898 W------NPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 898 W------Np~~e~QAigRi~RiGQ~k~V~V 921 (972)
| ++....|++||++|.|+...+.+
T Consensus 322 ~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 351 (395)
T 3pey_A 322 TLANGQADPATYIHRIGRTGRFGRKGVAIS 351 (395)
T ss_dssp BCTTSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred CCCcCCCCHHHhhHhccccccCCCCceEEE
Confidence 9 99999999999999998655443
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.91 E-value=4.3e-25 Score=251.69 Aligned_cols=106 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
|+|||+.....++.+...|+..|+.+..++|.++..+|.++++.|+++ ...|| +++.++++|+|++.+++||++|++|
T Consensus 261 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-v~T~~~~~Gldi~~~~~Vi~~~~p~ 338 (394)
T 1fuu_A 261 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRIL-ISTDLLARGIDVQQVSLVINYDLPA 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC-CCcEE-EECChhhcCCCcccCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999865 55555 5779999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
++....|++||++|.|+...+.+ |+.++
T Consensus 339 s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 339 NKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp ------------------------------
T ss_pred CHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 99999999999999998765444 45444
No 24
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=3.7e-24 Score=245.79 Aligned_cols=106 Identities=19% Similarity=0.303 Sum_probs=83.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.....++.+...|...++.+..++|.++..+|.++++.|+++ ...| |+++.++++|+|+..+++||++|++|
T Consensus 282 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~Gidip~v~~Vi~~~~p~ 359 (414)
T 3eiq_A 282 QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG-SSRV-LITTDLLARGIDVQQVSLVINYDLPT 359 (414)
T ss_dssp SCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC----C-EEECSSCC--CCGGGCSCEEESSCCS
T ss_pred cEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC-CCcE-EEECCccccCCCccCCCEEEEeCCCC
Confidence 899999999999999999999999999999999999999999999975 5555 55779999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
|+....|++||++|.|+... ++.|+.++
T Consensus 360 s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 360 NRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp STHHHHHHSCCC-------C--EEEEECST
T ss_pred CHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 99999999999999997654 44566665
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.90 E-value=1.5e-22 Score=235.50 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=94.8
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||++....++.+...|.+.|+.+..++|.++..+|.+++++|+++ ...||+ +++++++|||+..+++||+||++|
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLv-aT~v~~rGlDi~~v~~VI~~d~p~ 379 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-SMKVLI-ATSVASRGLDIKNIKHVINYDMPS 379 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-SCSEEE-ECGGGTSSCCCTTCCEEEESSCCS
T ss_pred CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC-CCcEEE-EchhhhCCCCcccCCEEEEECCCC
Confidence 699999999999999999999999999999999999999999999976 666654 669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEec
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTI 926 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~ 926 (972)
++....||+||++|.|+...+.+ |+.
T Consensus 380 ~~~~y~qriGR~gR~g~~G~a~~--~~~ 405 (434)
T 2db3_A 380 KIDDYVHRIGRTGRVGNNGRATS--FFD 405 (434)
T ss_dssp SHHHHHHHHTTSSCTTCCEEEEE--EEC
T ss_pred CHHHHHHHhcccccCCCCCEEEE--EEe
Confidence 99999999999999998765444 454
No 26
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.89 E-value=4.5e-21 Score=219.69 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=91.1
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.....++.+...|...|+.+..++|.|+..+|.++++.|+++ ...|| +++.++++|+|+.++++||++|++|
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vl-v~T~~~~~Gidip~~~~Vi~~~~p~ 345 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVL-VTTNVCARGIDVEQVSVVINFDLPV 345 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCSEE-EECGGGTSSCCCTTEEEEEESSCCB
T ss_pred CEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC-CCcEE-EEcCccccCCCccCCCEEEEECCCC
Confidence 999999999999999999999999999999999999999999999976 56655 5669999999999999999999999
Q ss_pred CCC------hHHHHhHhhcccCCcccEE
Q 002077 899 NPT------TEDQAVDRAHRIGQTRPVT 920 (972)
Q Consensus 899 Np~------~e~QAigRi~RiGQ~k~V~ 920 (972)
++. ...|++||++|.|+...+.
T Consensus 346 ~~~~~~s~~~~~Qr~GR~gR~g~~g~~~ 373 (412)
T 3fht_A 346 DKDGNPDNETYLHRIGRTGRFGKRGLAV 373 (412)
T ss_dssp CSSSSBCHHHHHHHHTTSSCTTCCEEEE
T ss_pred CCCCCcchheeecccCcccCCCCCceEE
Confidence 884 8899999999999765433
No 27
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=232.35 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=93.4
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.....++.+...|.+.|+.+..++|.++.++|.++++.|+++ ...||+ ++.++++|+|+..+++||++|++|
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv-aT~~~~~Gidip~v~~Vi~~~~p~ 355 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILV-ATAVAARGLDISNVKHVINFDLPS 355 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT-SSCEEE-ECHHHHTTSCCCCEEEEEESSCCS
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC-CCCEEE-ECChhhcCCCcccCCEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999975 566555 669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
++....|++||++|.|+... ++.|+.+.
T Consensus 356 s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (417)
T 2i4i_A 356 DIEEYVHRIGRTGRVGNLGL--ATSFFNER 383 (417)
T ss_dssp SHHHHHHHHTTBCC--CCEE--EEEEECGG
T ss_pred CHHHHHHhcCccccCCCCce--EEEEEccc
Confidence 99999999999999997644 44455544
No 28
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.85 E-value=2.4e-20 Score=239.74 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=92.9
Q ss_pred eEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
+++||++....++.+...|++. ++.+..++|.|+..+|++++++|.++ ++.||+ +|.++++|+|+..+++||++++
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-~~~VLV-aT~v~e~GiDip~v~~VIi~~~ 891 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLV-CTTIIETGIDIPTANTIIIERA 891 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-SCCEEE-ESSTTGGGSCCTTEEEEEETTT
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-CCcEEE-ECCcceeeecccCCcEEEEeCC
Confidence 9999999999999999999987 89999999999999999999999965 666655 6699999999999999999998
Q ss_pred -CCCCChHHHHhHhhcccCCcccEEEEEEecC
Q 002077 897 -WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 927 (972)
Q Consensus 897 -~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~ 927 (972)
.|+++...|++||++|.|+...+ |.++..
T Consensus 892 ~~~~l~~l~Qr~GRvgR~g~~g~~--~ll~~~ 921 (1151)
T 2eyq_A 892 DHFGLAQLHQLRGRVGRSHHQAYA--WLLTPH 921 (1151)
T ss_dssp TSSCHHHHHHHHTTCCBTTBCEEE--EEEECC
T ss_pred CCCCHHHHHHHHhccCcCCCceEE--EEEECC
Confidence 69999999999999999975544 445544
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.85 E-value=2.7e-20 Score=221.46 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=94.1
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+......+.+...|...|+.+..++|.++.++|.++++.|.++ ++.||+ +|.+.|.|+|+.++++||++|++|
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~vlV-aT~a~~~GiD~p~v~~VI~~~~p~ 315 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD-DLQIVV-ATVAFGMGINKPNVRFVVHFDIPR 315 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEE-ECTTSCTTTCCTTCCEEEESSCCS
T ss_pred cEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeEEE-EechhhCCCCccCccEEEEECCCC
Confidence 999999999999999999999999999999999999999999999976 666665 569999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEE
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V 921 (972)
++....|++||++|.|+...+.+
T Consensus 316 s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 316 NIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp SHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CHHHHHHHhccccCCCCCceEEE
Confidence 99999999999999998776544
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.85 E-value=3.9e-20 Score=213.33 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=89.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHhhhcCCCeeEEEEe---cCccccccCCCC-CCEEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYR-RLDGTMSLPARDRAVKDFNTDREITVMLMS---LKAGNLGLNMVA-ASHVIL 893 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~-~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS---lkagg~GLNLt~-A~~VI~ 893 (972)
++|||+.....++.+...|...|+.+. .++|. +|. ++.|+++ ++.||+.+ +.++++|+|+.+ +++||+
T Consensus 254 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g-~~~vLvat~s~T~~~~~GiDip~~v~~VI~ 326 (414)
T 3oiy_A 254 GILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIF 326 (414)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTT-SCSEEEEECCTTCCCCCCCCCTTTCCEEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCC-CCeEEEEecCcCchhhccCccccccCEEEE
Confidence 999999999999999999999999998 88884 444 9999976 78888875 899999999999 999999
Q ss_pred ecCC--CCCChHHHHhHhhcccCCc--ccEEEEEEe
Q 002077 894 LDLW--WNPTTEDQAVDRAHRIGQT--RPVTVTRLT 925 (972)
Q Consensus 894 ~Dp~--WNp~~e~QAigRi~RiGQ~--k~V~V~rli 925 (972)
+|++ +++....|++||++|.|+. +.-.++.|+
T Consensus 327 ~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 327 WGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp ESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred ECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 9999 9999999999999999986 566666666
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.84 E-value=5.1e-21 Score=227.07 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=73.5
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC-
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW- 897 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~- 897 (972)
++|||+.....++.+...|.+.++.+..++|.++..+|.++++.|+++ ...|| +++.++++|+|+..+++||++|++
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g-~~~VL-VaT~~l~~GiDip~v~~VI~~~~p~ 436 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG-TSKVL-VTTNVIARGIDVSQVNLVVNYDMPL 436 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS-SCCCC-EECC-----CCCTTCCEEEC----C
T ss_pred cEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEE-EeCChhhcCCCccCCCEEEEECCCC
Confidence 999999999999999999999999999999999999999999999975 55654 466999999999999999999999
Q ss_pred -----CCCChHHHHhHhhcccCCcccEEEE
Q 002077 898 -----WNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 898 -----WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
+++....|++||++|.|+...+.++
T Consensus 437 ~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 437 DQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp C-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred cccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 7788999999999999976655544
No 32
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.83 E-value=1.5e-19 Score=217.80 Aligned_cols=107 Identities=17% Similarity=0.308 Sum_probs=95.1
Q ss_pred ceEEEEecchHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEe
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQH---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 894 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~---gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~ 894 (972)
.++|||+.....++.+...|... ++.+..++|.|+..+|.++++.|+.+ ...||+ +|.++++|||+..+++||++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g-~~~vLV-aT~~~~~GiDip~v~~VI~~ 366 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILV-CTDVGARGMDFPNVHEVLQI 366 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEE-ECGGGTSSCCCTTCCEEEEE
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC-CCeEEE-EcchhhcCCCcccCCEEEEc
Confidence 49999999999999999999987 99999999999999999999999986 666655 66999999999999999999
Q ss_pred cCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 895 DLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 895 Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
|++|++....|++||++|.|+...+.+ |+.++
T Consensus 367 ~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~ 398 (579)
T 3sqw_A 367 GVPSELANYIHRIGRTARSGKEGSSVL--FICKD 398 (579)
T ss_dssp SCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG
T ss_pred CCCCCHHHhhhhccccccCCCCceEEE--EEccc
Confidence 999999999999999999997655444 44443
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.82 E-value=5.4e-19 Score=212.84 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=94.7
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.++|||+......+.+...|...|+.+..++|.|+..+|.++++.|..+ .+.||+ +|.+.|.|+|+..+++||++|++
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~VlV-AT~a~~~GID~p~V~~VI~~~~p 345 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN-EIQVVV-ATVAFGMGIDKPDVRFVIHHSMS 345 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEEE-ECTTSCTTCCCSCEEEEEESSCC
T ss_pred CCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeEEE-EechhhcCCCcccccEEEEeCCC
Confidence 3999999999999999999999999999999999999999999999976 666665 56999999999999999999999
Q ss_pred CCCChHHHHhHhhcccCCcccEEEE
Q 002077 898 WNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
+++....|++||++|.|+...+.++
T Consensus 346 ~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 346 KSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp SSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999999999999987665544
No 34
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.82 E-value=8.5e-19 Score=210.30 Aligned_cols=107 Identities=17% Similarity=0.295 Sum_probs=94.8
Q ss_pred ceEEEEecchHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEe
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQH---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 894 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~---gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~ 894 (972)
.++|||+......+.+...|... ++.+..++|.|+..+|.++++.|+++ .+.||+ +|.++++|||+.++++||++
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vLv-aT~~~~~GiDip~v~~VI~~ 417 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILV-CTDVGARGMDFPNVHEVLQI 417 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEE-ECGGGTSSCCCTTCCEEEEE
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC-CCCEEE-EcchhhcCCCcccCCEEEEE
Confidence 49999999999999999999986 99999999999999999999999986 666655 66999999999999999999
Q ss_pred cCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 895 DLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 895 Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
|+++++....|++||++|.|+...+. .|+..+
T Consensus 418 ~~p~s~~~y~Qr~GRagR~g~~g~~i--~~~~~~ 449 (563)
T 3i5x_A 418 GVPSELANYIHRIGRTARSGKEGSSV--LFICKD 449 (563)
T ss_dssp SCCSSTTHHHHHHTTSSCTTCCEEEE--EEEEGG
T ss_pred CCCCchhhhhhhcCccccCCCCceEE--EEEchh
Confidence 99999999999999999999765443 344444
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7.3e-19 Score=222.89 Aligned_cols=116 Identities=18% Similarity=0.098 Sum_probs=100.5
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCc---------------------------------------EEEEeCCCCHHHHHHH
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQ---------------------------------------YRRLDGTMSLPARDRA 859 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~---------------------------------------~~~ldGs~s~~~R~~~ 859 (972)
++|||+......+.+...|...++. +..++|+|+..+|..+
T Consensus 345 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~v 424 (1010)
T 2xgj_A 345 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 424 (1010)
T ss_dssp SEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHH
Confidence 8999999999999998888765442 6789999999999999
Q ss_pred HHhhhcCCCeeEEEEecCccccccCCCCCCEEEE----ecC----CCCCChHHHHhHhhcccCCcccEEEEEEecCCCHH
Q 002077 860 VKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----LDL----WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931 (972)
Q Consensus 860 I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~----~Dp----~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIE 931 (972)
++.|+++ .++||+ +|.++++|+|+.++++||. ||. ||++....|++||++|.|+....+++.|+.++.-+
T Consensus 425 e~~F~~G-~ikVLV-AT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~ 502 (1010)
T 2xgj_A 425 EILFQEG-FLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 502 (1010)
T ss_dssp HHHHHTT-CCSEEE-EEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCH
T ss_pred HHHHhcC-CCcEEE-EehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCH
Confidence 9999975 777766 4599999999999999999 999 99999999999999999999889999998876434
Q ss_pred HHHHH
Q 002077 932 DRILK 936 (972)
Q Consensus 932 e~Il~ 936 (972)
..+.+
T Consensus 503 ~~~~~ 507 (1010)
T 2xgj_A 503 QVAKG 507 (1010)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.81 E-value=4.9e-20 Score=216.72 Aligned_cols=101 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
++|||+.....++.+...|...++.+..++|.++..+|.++++.|+++ ...|| ++|.++++|||+.++++||++|++|
T Consensus 335 ~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g-~~~iL-v~T~~~~~GlDip~v~~VI~~d~p~ 412 (479)
T 3fmp_B 335 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVL-VTTNVCARGIDVEQVSVVINFDLPV 412 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC-CCcEE-EEccccccCCccccCCEEEEecCCC
Confidence 899999999999999999999999999999999999999999999975 56655 5669999999999999999999999
Q ss_pred CC------ChHHHHhHhhcccCCcccEEE
Q 002077 899 NP------TTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 899 Np------~~e~QAigRi~RiGQ~k~V~V 921 (972)
++ ....|++||++|.|+...+.+
T Consensus 413 ~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 413 DKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp -----------------------------
T ss_pred CCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 76 588999999999997655433
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.79 E-value=1.8e-19 Score=221.97 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=82.3
Q ss_pred eEEEEecch--------HHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCC
Q 002077 819 KSIVFSQWT--------RMLDLVENSLNQ---HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA 887 (972)
Q Consensus 819 KvIVFSqft--------~~ld~L~~~L~~---~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~ 887 (972)
+++|||... ..++.+...|.+ .++.+..++|.|+.++|.++++.|+++ ++.|| ++|.++++|+|+.+
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G-~~~IL-VaT~vie~GIDiP~ 657 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG-RYDIL-VSTTVIEVGIDVPR 657 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT-SSSBC-CCSSCCCSCSCCTT
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEE-EECCCCCccccCCC
Confidence 778887654 235667777877 478899999999999999999999975 66665 47799999999999
Q ss_pred CCEEEEecCC-CCCChHHHHhHhhcccCCcccEEE
Q 002077 888 ASHVILLDLW-WNPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 888 A~~VI~~Dp~-WNp~~e~QAigRi~RiGQ~k~V~V 921 (972)
+++||++|++ |+.+...|++||++|.|+...+.+
T Consensus 658 v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 658 ANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp CCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred CCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 9999999998 578889999999999998765443
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.4e-17 Score=212.84 Aligned_cols=116 Identities=17% Similarity=0.084 Sum_probs=97.1
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCc---------------------------------------EEEEeCCCCHHHHHHH
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQ---------------------------------------YRRLDGTMSLPARDRA 859 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~---------------------------------------~~~ldGs~s~~~R~~~ 859 (972)
++|||+......+.+...|...++. +..++|.|++.+|..+
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 8999999999999988887654333 6889999999999999
Q ss_pred HHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCCh--------HHHHhHhhcccCCcccEEEEEEecCCCHH
Q 002077 860 VKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTT--------EDQAVDRAHRIGQTRPVTVTRLTIRDTVE 931 (972)
Q Consensus 860 I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~--------e~QAigRi~RiGQ~k~V~V~rli~~dTIE 931 (972)
++.|..+ .++||+ +|.++++|||+.++++||+++.+|++.. ..|++||++|.|+...-+++.++..+..+
T Consensus 523 ~~~F~~G-~ikVLV-AT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~ 600 (1108)
T 3l9o_A 523 EILFQEG-FLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 600 (1108)
T ss_dssp HHHHHHT-CCCEEE-EESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH
T ss_pred HHHHhCC-CCeEEE-ECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH
Confidence 9999976 777766 5599999999999999999999888876 78999999999999999999998877544
Q ss_pred HHHHH
Q 002077 932 DRILK 936 (972)
Q Consensus 932 e~Il~ 936 (972)
..+..
T Consensus 601 ~~~~~ 605 (1108)
T 3l9o_A 601 QVAKG 605 (1108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.71 E-value=5.5e-17 Score=199.89 Aligned_cols=112 Identities=16% Similarity=0.087 Sum_probs=96.2
Q ss_pred eEEEEecchHHHHHHHHHHHhC------------------------------CCcEEEEeCCCCHHHHHHHHHhhhcCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH------------------------------CIQYRRLDGTMSLPARDRAVKDFNTDRE 868 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~------------------------------gi~~~~ldGs~s~~~R~~~I~~F~~~~~ 868 (972)
++|||+......+.+...|.+. +..+..++|+++.++|..+.+.|.++ .
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g-~ 322 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG-N 322 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC-C
Confidence 8999999998888877777642 12456799999999999999999976 6
Q ss_pred eeEEEEecCccccccCCCCCCEEEE----ec---CCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHH
Q 002077 869 ITVMLMSLKAGNLGLNMVAASHVIL----LD---LWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED 932 (972)
Q Consensus 869 ~~VlLiSlkagg~GLNLt~A~~VI~----~D---p~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe 932 (972)
++|++ +|.+++.|+|+.+.++||. || .|++++...|++||++|.|+.++-.++.++.+...+.
T Consensus 323 ~~vlv-aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 323 IKVVV-ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp CCEEE-ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred CeEEE-ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 77666 6699999999999999998 76 7899999999999999999999999999998877554
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.71 E-value=2.9e-16 Score=199.16 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=94.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCC---------------------------------------cEEEEeCCCCHHHHHHH
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCI---------------------------------------QYRRLDGTMSLPARDRA 859 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi---------------------------------------~~~~ldGs~s~~~R~~~ 859 (972)
++|||+......+.+...|...++ .+..++|.|+..+|+.+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 899999999999999998877666 46899999999999999
Q ss_pred HHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC---------CCChHHHHhHhhcccCCcccEEEEEEecCCCH
Q 002077 860 VKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW---------NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 930 (972)
Q Consensus 860 I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W---------Np~~e~QAigRi~RiGQ~k~V~V~rli~~dTI 930 (972)
++.|..+ .++||+ +|.+.++|||+.+ ..||+++..+ ++....|++||++|.|+...-+++.++..+..
T Consensus 418 ~~~F~~G-~~kVLv-AT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~ 494 (997)
T 4a4z_A 418 EILFSKG-FIKVLF-ATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 494 (997)
T ss_dssp HHHHHTT-CCSEEE-ECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCC
T ss_pred HHHHHCC-CCcEEE-EchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcc
Confidence 9999976 677766 5599999999999 6666644444 88899999999999999999888888865554
Q ss_pred HHHH
Q 002077 931 EDRI 934 (972)
Q Consensus 931 Ee~I 934 (972)
+..+
T Consensus 495 ~~~~ 498 (997)
T 4a4z_A 495 SIAT 498 (997)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 4444
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.70 E-value=4.6e-16 Score=192.02 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=92.0
Q ss_pred eEEEEecchHHHHHHHHHHHhCC------------------------------------CcEEEEeCCCCHHHHHHHHHh
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHC------------------------------------IQYRRLDGTMSLPARDRAVKD 862 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~g------------------------------------i~~~~ldGs~s~~~R~~~I~~ 862 (972)
++|||+......+.+...|.... ..+..++|+++.++|..+.+.
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 99999999999998888887642 247889999999999999999
Q ss_pred hhcCCCeeEEEEecCccccccCCCCCCEEEE----ec-------CCCCCChHHHHhHhhcccCCcccEEEEEEecCCC
Q 002077 863 FNTDREITVMLMSLKAGNLGLNMVAASHVIL----LD-------LWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 863 F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~----~D-------p~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dT 929 (972)
|.++ .++|++ +|.++++|+|+.+.++||. || .|++++...|++||++|.|+..+-.+|.++....
T Consensus 334 f~~g-~~~vlv-aT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 334 FRQR-KIKVIV-ATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHTT-CSCEEE-ECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHcC-CCeEEE-EChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9975 677766 5599999999999999998 99 8999999999999999999999988998987764
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.70 E-value=2.3e-16 Score=194.81 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=98.0
Q ss_pred eEEEEecchHHHHHHHHHHHhC------------------C---------------CcEEEEeCCCCHHHHHHHHHhhhc
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH------------------C---------------IQYRRLDGTMSLPARDRAVKDFNT 865 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~------------------g---------------i~~~~ldGs~s~~~R~~~I~~F~~ 865 (972)
++|||+......+.+...|.+. + ..+..++|+++.++|..+.+.|.+
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 9999999999888888877653 1 247889999999999999999997
Q ss_pred CCCeeEEEEecCccccccCCCCCCEEEE----ec----CCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHH
Q 002077 866 DREITVMLMSLKAGNLGLNMVAASHVIL----LD----LWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 934 (972)
Q Consensus 866 ~~~~~VlLiSlkagg~GLNLt~A~~VI~----~D----p~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~I 934 (972)
+ .++||+ +|.+++.|+|+.+.++||. || .+++++...|++||++|.|+.++-.++.++.++..+..+
T Consensus 319 g-~~~vlv-aT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~ 393 (720)
T 2zj8_A 319 G-IIKAVV-ATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVM 393 (720)
T ss_dssp T-SSCEEE-ECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHH
T ss_pred C-CCeEEE-ECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHH
Confidence 5 677766 5599999999999999998 77 688999999999999999999998999999888765433
No 43
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=161.84 Aligned_cols=125 Identities=21% Similarity=0.275 Sum_probs=95.2
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.+.|+..|+++|.... .+ .|+|||++....++.|...|...|+.+..++|
T Consensus 29 ~~~K~~~L~~ll~~~~-~~-----------------------------~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 78 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATG-KD-----------------------------SLTLVFVETKKGADSLEDFLYHEGYACTSIHG 78 (185)
T ss_dssp GGGHHHHHHHHHHHC--CC-----------------------------SCEEEEESCHHHHHHHHHHHHHTTCCEEEEC-
T ss_pred cHHHHHHHHHHHHhcC-CC-----------------------------CeEEEEECCHHHHHHHHHHHHHcCCceEEEeC
Confidence 4679999999988742 22 39999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
.|+..+|.++++.|+.+ .+.||+ +++++++|+|++.+++||++|++||+....|++||++|.|++..+ +.|+.+.
T Consensus 79 ~~~~~~r~~~~~~f~~g-~~~vLv-aT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 153 (185)
T 2jgn_A 79 DRSQRDREEALHQFRSG-KSPILV-ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA--TSFFNER 153 (185)
T ss_dssp -------CHHHHHHHHT-SSSEEE-EEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE--EEEECGG
T ss_pred CCCHHHHHHHHHHHHcC-CCeEEE-EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE--EEEEchh
Confidence 99999999999999976 666665 559999999999999999999999999999999999999986554 4455544
No 44
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.66 E-value=4.3e-16 Score=156.42 Aligned_cols=124 Identities=17% Similarity=0.220 Sum_probs=109.1
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.+.|+..|.++|... .+ .|+|||++....++.+...|...|+.+..++|
T Consensus 19 ~~~K~~~L~~ll~~~--~~-----------------------------~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg 67 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NP-----------------------------DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHG 67 (163)
T ss_dssp GGGHHHHHHHHHHHH--CC-----------------------------SSEEEECSSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred hHHHHHHHHHHHHhc--CC-----------------------------CcEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 467999999988763 22 39999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
.|+..+|.++++.|+++ .+.||+ +++++++|+|++.+++||++|++||+....|++||++|.||...+. .|+...
T Consensus 68 ~~~~~~r~~~~~~f~~g-~~~vlv-~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~~ 142 (163)
T 2hjv_A 68 GMIQEDRFDVMNEFKRG-EYRYLV-ATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI--SFVTAF 142 (163)
T ss_dssp TSCHHHHHHHHHHHHTT-SCSEEE-ECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEE--EEECGG
T ss_pred CCCHHHHHHHHHHHHcC-CCeEEE-ECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEE--EEecHH
Confidence 99999999999999976 666665 6699999999999999999999999999999999999999876554 455544
No 45
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.66 E-value=4.1e-16 Score=158.14 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=106.5
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.+.|+..|.++|+.. .+ .|+|||+++...++.+...|...|+.+..++|
T Consensus 15 ~~~K~~~L~~ll~~~--~~-----------------------------~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg 63 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EF-----------------------------NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 63 (172)
T ss_dssp GGGHHHHHHHHHHHS--CC-----------------------------SSEEEECSSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred hHHHHHHHHHHHHhC--CC-----------------------------CcEEEEECCHHHHHHHHHHHHhcCCCEEEEEC
Confidence 467999999998764 22 39999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 921 (972)
.|+..+|.++++.|+++ .+.||+ +++++++|+|++.+++||++|++||+....|++||++|.|+...+.+
T Consensus 64 ~~~~~~r~~~~~~f~~g-~~~vLv-aT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 64 GMPQEERLSRYQQFKDF-QRRILV-ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp TSCHHHHHHHHHHHHTT-SCSEEE-ESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred CCCHHHHHHHHHHHHCC-CCcEEE-ECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999999975 677766 55999999999999999999999999999999999999998765443
No 46
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.64 E-value=6e-16 Score=195.48 Aligned_cols=105 Identities=8% Similarity=0.073 Sum_probs=82.4
Q ss_pred ceEEEEecchHHHHHHHHHHHhCC------------CcE-EEEeCC----------C----------CH-----------
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHC------------IQY-RRLDGT----------M----------SL----------- 853 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~g------------i~~-~~ldGs----------~----------s~----------- 853 (972)
.|+||||.....+..+...|.+.+ +++ +.++|. + +.
T Consensus 538 ~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~ 617 (1038)
T 2w00_A 538 FNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIR 617 (1038)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHH
Confidence 489999999999888888887654 454 445542 2 21
Q ss_pred ------------------HHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCC
Q 002077 854 ------------------PARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQ 915 (972)
Q Consensus 854 ------------------~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ 915 (972)
..|..++++|+++ .++||++. +...+|++...+ +++++|.+.......||+||+.|.+.
T Consensus 618 dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g-~i~ILIvv-d~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 618 EYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ-DIDLLIVV-GMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp HHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-SSSEEEES-STTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcccccccchhhhHHHHHHHHHHHcC-CCeEEEEc-chHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 1488899999975 77877765 888899999999 78889999999999999999999997
Q ss_pred c-cc-EEEEEEe
Q 002077 916 T-RP-VTVTRLT 925 (972)
Q Consensus 916 ~-k~-V~V~rli 925 (972)
. |+ ..|+-|+
T Consensus 695 ~~K~~G~IVdf~ 706 (1038)
T 2w00_A 695 ATKTFGNIVTFR 706 (1038)
T ss_dssp TTCCSEEEEESS
T ss_pred CCCCcEEEEEcc
Confidence 4 44 6666666
No 47
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=163.14 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=93.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
|+|||+++...++.|...|...|+.+..++|.++..+|.++++.|+++ .+.||+ +++++++|+|++.+++||+||++|
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLv-aT~~~~~Gldi~~v~~VI~~d~p~ 133 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLV-ATDVASKGLDFPAIQHVINYDMPE 133 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEE-ECHHHHTTCCCCCCSEEEESSCCS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEE-EcCchhcCCCcccCCEEEEeCCCC
Confidence 899999999999999999999999999999999999999999999976 666655 669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
|+....|++||++|.|++..+ +.|+...
T Consensus 134 ~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 134 EIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp SHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred CHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999997654 3455544
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.62 E-value=1.3e-14 Score=185.71 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=66.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHhhhcCCCeeEEEEe---cCccccccCCCC-CCEEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYR-RLDGTMSLPARDRAVKDFNTDREITVMLMS---LKAGNLGLNMVA-ASHVIL 893 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~-~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS---lkagg~GLNLt~-A~~VI~ 893 (972)
++|||+.....++.|...|...|+... .++| +|.+ ++.|.++ ...||+.+ |.+++.|||+.+ .++||+
T Consensus 311 ~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G-~~~VLVatas~TdvlarGIDip~~V~~VI~ 383 (1104)
T 4ddu_A 311 GILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIF 383 (1104)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHT-SCSEEEEETTTHHHHCCSCCCTTTCCEEEE
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCC-CCCEEEEecCCCCeeEecCcCCCCCCEEEE
Confidence 999999999999999999999999998 8888 3556 9999986 78888874 899999999999 899999
Q ss_pred ecCCC
Q 002077 894 LDLWW 898 (972)
Q Consensus 894 ~Dp~W 898 (972)
||+|-
T Consensus 384 ~d~P~ 388 (1104)
T 4ddu_A 384 WGTPS 388 (1104)
T ss_dssp ESCCE
T ss_pred ECCCC
Confidence 99997
No 49
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.61 E-value=2.2e-15 Score=151.46 Aligned_cols=124 Identities=17% Similarity=0.249 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCC
Q 002077 772 SKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTM 851 (972)
Q Consensus 772 sKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~ 851 (972)
.|+..|.+++... .+ .|+|||++....++.+...|...|+.+..++|.|
T Consensus 16 ~K~~~l~~ll~~~--~~-----------------------------~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 64 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SV-----------------------------TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDL 64 (165)
T ss_dssp GHHHHHHHHHHHT--TC-----------------------------SCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred hHHHHHHHHHHhC--CC-----------------------------CCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3999999988764 22 3999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCH
Q 002077 852 SLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 930 (972)
Q Consensus 852 s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTI 930 (972)
+..+|.++++.|+.+ ...||+ ++.++++|+|++.+++||++|++|++....|++||++|.|+...+ +.|+.++..
T Consensus 65 ~~~~r~~~~~~f~~g-~~~vlv-~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~ 139 (165)
T 1fuk_A 65 PQQERDTIMKEFRSG-SSRILI-STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDV 139 (165)
T ss_dssp CHHHHHHHHHHHHTT-SCSEEE-EEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTH
T ss_pred CHHHHHHHHHHHHcC-CCEEEE-EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHH
Confidence 999999999999975 667665 559999999999999999999999999999999999999976654 456666643
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.61 E-value=7.9e-15 Score=187.44 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=61.4
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe---cCccccccCCCCC-CEEEEe
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS---LKAGNLGLNMVAA-SHVILL 894 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS---lkagg~GLNLt~A-~~VI~~ 894 (972)
++|||+.....++.+...|... ++...++|.+ .++++.|..+ ...||+.+ |.++++|||+.++ ++||++
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G-~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~ 349 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEG-EIDHLIGTAHYYGTLVRGLDLPERIRFAVFV 349 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHT-SCSEEEEECC------CCSCCTTTCCEEEEE
T ss_pred CEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcC-CCcEEEEecCCCCeeEeccccCCcccEEEEe
Confidence 8999999999999999999998 9999999997 3788999976 78888875 8999999999996 999999
Q ss_pred cCC
Q 002077 895 DLW 897 (972)
Q Consensus 895 Dp~ 897 (972)
|++
T Consensus 350 ~~P 352 (1054)
T 1gku_B 350 GCP 352 (1054)
T ss_dssp SCC
T ss_pred CCC
Confidence 999
No 51
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=147.63 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=90.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
|+|||+++...++.+...|...|+.+..++|.|+..+|.++++.|+++ .+.||+ ++.++++|+|++.+++||+||++|
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLv-aT~~~~~Gid~~~~~~Vi~~d~p~ 113 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLI-TTNVCARGIDVKQVTIVVNFDLPV 113 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEE-ECCSCCTTTCCTTEEEEEESSCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE-EecchhcCCCcccCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999975 666655 569999999999999999999995
Q ss_pred C------CChHHHHhHhhcccCCcccEEEEEEecCCC
Q 002077 899 N------PTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 899 N------p~~e~QAigRi~RiGQ~k~V~V~rli~~dT 929 (972)
| +....|++||++|.|+. -.++.|+..+.
T Consensus 114 ~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 114 KQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp --CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred CccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 5 56788999999999965 45566776664
No 52
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.55 E-value=1.1e-14 Score=159.08 Aligned_cols=106 Identities=19% Similarity=0.111 Sum_probs=78.4
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
...|+|||.+++.+++.. ..+||+++||.|||+++++++......
T Consensus 111 ~~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------------------- 155 (282)
T 1rif_A 111 RIEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLEN---------------------------- 155 (282)
T ss_dssp ECCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHH----------------------------
T ss_pred ccCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHc----------------------------
Confidence 468999999999998854 237999999999999998887642211
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhh
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l 430 (972)
..+++|||||. .|+.||.+++.++.... ...+..++|...... ...
T Consensus 156 -------------------------------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~ 202 (282)
T 1rif_A 156 -------------------------------YEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDD-KYK 202 (282)
T ss_dssp -------------------------------CSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTCSSTT-CCC
T ss_pred -------------------------------CCCeEEEEECCHHHHHHHHHHHHHhcccc-cceEEEEeCCCcchh-hhc
Confidence 11359999996 79999999999986432 345555555443222 334
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
...+|+|+||+.+.+
T Consensus 203 ~~~~I~v~T~~~l~~ 217 (282)
T 1rif_A 203 NDAPVVVGTWQTVVK 217 (282)
T ss_dssp TTCSEEEECHHHHTT
T ss_pred cCCcEEEEchHHHHh
Confidence 678999999998865
No 53
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.32 E-value=3.7e-16 Score=157.99 Aligned_cols=101 Identities=23% Similarity=0.325 Sum_probs=93.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
|+|||+++...++.+...|...|+.+..++|.|+..+|.++++.|+++ .+.|| ++++++++|+|++.+++||++|++|
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vL-vaT~~~~~Gid~~~~~~Vi~~~~p~ 109 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVL-VATDVAARGIDIPDVSHVFNFDMPR 109 (170)
Confidence 999999999999999999999999999999999999999999999975 56655 4669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEE
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V 921 (972)
|+....|++||++|.||+..+.+
T Consensus 110 ~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 110 SGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 99999999999999999776544
No 54
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.52 E-value=5.1e-14 Score=147.66 Aligned_cols=124 Identities=18% Similarity=0.244 Sum_probs=107.1
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.+.|+..|.+++.... + .++|||+.....++.+...|...|+.+..++|
T Consensus 15 ~~~k~~~l~~ll~~~~--~-----------------------------~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg 63 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVAS--P-----------------------------DRAMVFTRTKAETEEIAQGLLRLGHPAQALHG 63 (212)
T ss_dssp TTSHHHHHHHHHHHHC--C-----------------------------SCEEEECSSHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHHHHHHHHHHHHhCC--C-----------------------------CeEEEEeCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4679999999887532 2 29999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
.|+..+|.++++.|+.+ ..+||+ +|.++++|+|++.+++||++|++|++....|++||++|.|+... ++.|+...
T Consensus 64 ~~~~~~r~~~~~~f~~g-~~~vlv-aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~l~~~~ 138 (212)
T 3eaq_A 64 DLSQGERERVLGAFRQG-EVRVLV-ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGR--VVLLYGPR 138 (212)
T ss_dssp SSCHHHHHHHHHHHHSS-SCCEEE-ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BE--EEEEECGG
T ss_pred CCCHHHHHHHHHHHHCC-CCeEEE-ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCe--EEEEEchh
Confidence 99999999999999976 667655 66999999999999999999999999999999999999997754 44555544
No 55
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.45 E-value=4.5e-12 Score=154.19 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=98.5
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|..++++.|.+....+. ++||||......+.|...|...||+...|+|
T Consensus 414 ~~~K~~al~~~i~~~~~~~~-----------------------------pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg 464 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQ-----------------------------PVLVGTVAVETSELISKLLKNKGIPHQVLNA 464 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----------------------------CEEEEESCHHHHHHHHHHHHTTTCCCEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------cEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 34699999999887655555 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC--------CCCEEEEecCCCCCChHHHHhHhhcccCCcccE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV--------AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt--------~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 919 (972)
.+...+|..+.+.|+.. .| +++|..+|.|+++. ...|||.+|.+-++....|++||++|.|..-..
T Consensus 465 ~~~~rEr~ii~~ag~~g---~V-lIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG---AV-TIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp SCHHHHHHHHTTTTSTT---CE-EEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred CccHHHHHHHHHcCCCC---eE-EEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 98766665444455432 44 56779999999999 678999999999999999999999999986653
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.44 E-value=1.2e-12 Score=159.22 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=92.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcC-CCeeEEEEecCccccccCCCCCCEEEEecC-
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAGNLGLNMVAASHVILLDL- 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~-~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp- 896 (972)
..|||+.-...++.+...|.+.++.+..++|.|+..+|.++++.|+.. +..+||+ +|.+++.|||+ .+++||++++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLV-ATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV-ATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEE-ECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEE-eCcHHHCCcCc-CccEEEECCcc
Confidence 346777778889999999999999999999999999999999999972 2566655 56999999999 9999999999
Q ss_pred -------------CCCCChHHHHhHhhcccCCc-ccEEEEEEecC
Q 002077 897 -------------WWNPTTEDQAVDRAHRIGQT-RPVTVTRLTIR 927 (972)
Q Consensus 897 -------------~WNp~~e~QAigRi~RiGQ~-k~V~V~rli~~ 927 (972)
|++++...|++||++|.|+. .+-.++.+..+
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 45677777655
No 57
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.44 E-value=8.5e-13 Score=145.53 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=104.9
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.+.|+.+|.+++.... +. ++|||+.....++.|...|...|+.+..++|
T Consensus 12 ~~~K~~~L~~ll~~~~--~~-----------------------------~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg 60 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PD-----------------------------RAMVFTRTKAETEEIAQGLLRLGHPAQALHG 60 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CS-----------------------------SEEEECSSHHHHHHHHHHHHTTTCCEEEECS
T ss_pred HHHHHHHHHHHHHhcC--CC-----------------------------CEEEEECCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4679999999887643 23 9999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
.|+..+|.++++.|+.+ ..+||+ +|.++++|+|+..+++||++|++|++....|++||++|.|+.. .++.|+...
T Consensus 61 ~l~~~~r~~~~~~f~~g-~~~vLV-aT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~ 135 (300)
T 3i32_A 61 DMSQGERERVMGAFRQG-EVRVLV-ATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 135 (300)
T ss_dssp CCCTHHHHHHHHHHHHT-SCCEEE-ECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSS
T ss_pred CCCHHHHHHHHHHhhcC-CceEEE-EechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChH
Confidence 99999999999999976 666665 5699999999999999999999999999999999999999874 445566554
No 58
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.43 E-value=3.5e-13 Score=143.80 Aligned_cols=93 Identities=25% Similarity=0.279 Sum_probs=74.4
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCC
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (972)
....|+|||..++.+++.. ..+||+.++|+|||+++++++...
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~-------~~~ll~~~tG~GKT~~a~~~~~~~------------------------------ 132 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------ 132 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTT-------SEEEEEESSSTTHHHHHHHHHHHS------------------------------
T ss_pred CCCCcCHHHHHHHHHHHhC-------CCEEEEeCCCCCHHHHHHHHHHHc------------------------------
Confidence 3568999999999987732 238999999999999999888631
Q ss_pred CCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeE-EEEEeCCCCCCChh
Q 002077 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALS-VLIYHGGSRTKDPV 428 (972)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~-vlvy~G~~r~~~~~ 428 (972)
.+++|||||. .|+.||.+++.++ .+. +.+++|....
T Consensus 133 ---------------------------------~~~~liv~P~~~L~~q~~~~~~~~-----~~~~v~~~~g~~~~---- 170 (237)
T 2fz4_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIKE---- 170 (237)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHHGGG-----CGGGEEEESSSCBC----
T ss_pred ---------------------------------CCCEEEEeCCHHHHHHHHHHHHhC-----CCCeEEEEeCCCCC----
Confidence 1348999998 7899999999994 356 7788876543
Q ss_pred hhcCCCEEEEchhhhhc
Q 002077 429 ELAKYDVVLTTYSIVTN 445 (972)
Q Consensus 429 ~l~~~DVVItTY~~l~~ 445 (972)
..+|+|+||+.+..
T Consensus 171 ---~~~i~v~T~~~l~~ 184 (237)
T 2fz4_A 171 ---LKPLTVSTYDSAYV 184 (237)
T ss_dssp ---CCSEEEEEHHHHHH
T ss_pred ---cCCEEEEeHHHHHh
Confidence 46899999998865
No 59
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.39 E-value=3.2e-11 Score=146.66 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|..++++.|.+....+. .+|||+......+.|...|.+.||++..|+|.
T Consensus 443 ~~K~~al~~~i~~~~~~gq-----------------------------pvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQ-----------------------------PVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----------------------------CEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------------------cEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 4699999999987766655 89999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC------------------------------------------
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA------------------------------------------ 888 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A------------------------------------------ 888 (972)
+...+|.-+.+.|+.+ .| +++|..+|.|+++...
T Consensus 494 ~~~rEa~iia~agr~G---~V-tIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG---GV-TVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASK 569 (922)
T ss_dssp CHHHHHHHHHTTTSTT---CE-EEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTH
T ss_pred hhHHHHHHHHhcCCCC---eE-EEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 8655555555666644 34 5677999999999863
Q ss_pred ----------CEEEEecCCCCCChHHHHhHhhcccCCcccE
Q 002077 889 ----------SHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 889 ----------~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 919 (972)
.|||.+|.+-++..+.|++||++|.|..-..
T Consensus 570 ~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s 610 (922)
T 1nkt_A 570 EAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGES 610 (922)
T ss_dssp HHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEE
T ss_pred hhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeE
Confidence 5999999999999999999999999986653
No 60
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.37 E-value=1.9e-11 Score=148.35 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=100.1
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.++++.|.+....+. .+|||+......+.|...|.+.||+...|+|
T Consensus 423 ~~~K~~al~~~i~~~~~~gq-----------------------------pvLVft~sie~se~Ls~~L~~~gi~~~vLna 473 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQ-----------------------------PVLVGTISIEKSELVSNELTKAGIKHNVLNA 473 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-----------------------------CEEEEESSHHHHHHHHHHHHHTTCCCEECCT
T ss_pred HHHHHHHHHHHHHHHhcCCC-----------------------------CEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 35699999999987665555 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC-------------------------------------CEEE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA-------------------------------------SHVI 892 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A-------------------------------------~~VI 892 (972)
.+...+|.-+.+.|+.+ . ++++|..+|.|+++... .|||
T Consensus 474 k~~~rEa~iia~agr~G---~-VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI 549 (853)
T 2fsf_A 474 KFHANEAAIVAQAGYPA---A-VTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII 549 (853)
T ss_dssp TCHHHHHHHHHTTTSTT---C-EEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred ChhHHHHHHHHhcCCCC---e-EEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE
Confidence 98776766666777754 3 45577999999999863 5999
Q ss_pred EecCCCCCChHHHHhHhhcccCCcccE
Q 002077 893 LLDLWWNPTTEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 893 ~~Dp~WNp~~e~QAigRi~RiGQ~k~V 919 (972)
.+|.+-++..+.|++||++|.|..-..
T Consensus 550 ~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 550 GTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred EccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999999999999999986653
No 61
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.35 E-value=2.4e-12 Score=149.36 Aligned_cols=98 Identities=10% Similarity=0.109 Sum_probs=83.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCE--------
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASH-------- 890 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~-------- 890 (972)
++|||+......+.+...|++.++.+..++|. +|+++++.|.++ ++.||+ +|.+.++|+|+..++.
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g-~~~vLV-aT~v~e~GiDip~~~VI~~g~~~~ 246 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE-KWDFVI-TTDISEMGANFKADRVIDPRKTIK 246 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS-CCSEEE-ECGGGGTSCCCCCSEEEECCEEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC-CCeEEE-ECchHHcCcccCCcEEEecCcccc
Confidence 89999999999999999999999999999997 578899999976 666665 6699999999984332
Q ss_pred --------EEEecCCCCCChHHHHhHhhcccCCcc-cEEEE
Q 002077 891 --------VILLDLWWNPTTEDQAVDRAHRIGQTR-PVTVT 922 (972)
Q Consensus 891 --------VI~~Dp~WNp~~e~QAigRi~RiGQ~k-~V~V~ 922 (972)
||+++.+.+++...|++||++|.|... .+.+|
T Consensus 247 ~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 247 PILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 678899999999999999999999654 34443
No 62
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=133.96 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=80.7
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
...|+|||.+++.++++ .+.+|+...+|.|||+.++.++........
T Consensus 31 ~~~l~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-------------------------- 77 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE-------GKNIIICLPTGSGKTRVAVYIAKDHLDKKK-------------------------- 77 (216)
T ss_dssp CCCCCHHHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred CCCchHHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHHHHHhhcc--------------------------
Confidence 45799999999998883 245899999999999999888764322100
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHH-HHHHHHhhCCCCCCeEEEEEeCCCCCCCh--
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQ-WARELEDKVPDKAALSVLIYHGGSRTKDP-- 427 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~Q-W~~Ei~k~~~~~~~l~vlvy~G~~r~~~~-- 427 (972)
......++|||||. .|+.| |.+++.++... .+++..++|.......
T Consensus 78 ----------------------------~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~ 127 (216)
T 3b6e_A 78 ----------------------------KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFP 127 (216)
T ss_dssp ----------------------------HTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT--TSCEEECCC---CCCCHH
T ss_pred ----------------------------cccCCCcEEEEECHHHHHHHHHHHHHHHHhcc--CceEEEEeCCcccchhHH
Confidence 00123469999997 57788 99999998764 5788888886644332
Q ss_pred hhhcCCCEEEEchhhhhcc
Q 002077 428 VELAKYDVVLTTYSIVTNE 446 (972)
Q Consensus 428 ~~l~~~DVVItTY~~l~~e 446 (972)
.....++|+|+||+.+...
T Consensus 128 ~~~~~~~i~v~T~~~l~~~ 146 (216)
T 3b6e_A 128 EVVKSCDIIISTAQILENS 146 (216)
T ss_dssp HHHHHCSEEEEEHHHHHHH
T ss_pred hhccCCCEEEECHHHHHHH
Confidence 2345799999999998653
No 63
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.30 E-value=1.3e-11 Score=152.73 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=92.2
Q ss_pred ceEEEEecchHHHHHHHHHHHh-----------CCCcEEEEeCCCCHHHHHHHHHhhh-----cCCCeeEEEEecCcccc
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQ-----------HCIQYRRLDGTMSLPARDRAVKDFN-----TDREITVMLMSLKAGNL 881 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~-----------~gi~~~~ldGs~s~~~R~~~I~~F~-----~~~~~~VlLiSlkagg~ 881 (972)
.++|||+.-...++.+...|.+ .++.+..++|.++.++|.++++.|. .+ ..+|| ++|.++++
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g-~~kVl-VAT~iae~ 381 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP-GRKVV-ISTNIAET 381 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC-CEEEE-EECTHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC-ceEEE-EeCcHHHh
Confidence 3999999999999988888875 5888999999999999999999998 43 55555 46699999
Q ss_pred ccCCCCCCEEEEecC------------------CCCCChHHHHhHhhcccCCcccEEEEEEecCCCH
Q 002077 882 GLNMVAASHVILLDL------------------WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 930 (972)
Q Consensus 882 GLNLt~A~~VI~~Dp------------------~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTI 930 (972)
|||+.+.++||.++. |.+.+...|++||++|. ++=.+|+|+.+...
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999665 88889999999999998 45577888876544
No 64
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.27 E-value=2.1e-11 Score=141.88 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=75.2
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE-----
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----- 893 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~----- 893 (972)
++|||+.....++.+...|+..|+++..++| ++|.++++.|+++ ++.||+ +|.+.++|+|+. +++||+
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g-~~~vLV-aT~v~e~GiDip-v~~VI~~g~~~ 251 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK-KPDFIL-ATDIAEMGANLC-VERVLDCRTAF 251 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C-CCSEEE-ESSSTTCCTTCC-CSEEEECCEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC-CceEEE-ECChhheeeccC-ceEEEeCCccc
Confidence 9999999999999999999999999999999 4688999999976 666665 669999999999 999986
Q ss_pred --------------ecCCCCCChHHHHhHhhcccCCcc
Q 002077 894 --------------LDLWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 894 --------------~Dp~WNp~~e~QAigRi~RiGQ~k 917 (972)
+|++.+++...|++||++|.|...
T Consensus 252 ~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 289 (440)
T 1yks_A 252 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 289 (440)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred eeeecccccceeeccccccCHHHHHHhccccCCCCCCC
Confidence 899999999999999999996433
No 65
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.27 E-value=4.1e-11 Score=139.80 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=83.0
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEec---
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD--- 895 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~D--- 895 (972)
++|||+......+.+...|.+.|+.+..++|.+ ++++++.|+++ ...||+ +|.++++|+|+.. ++||++|
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g-~~~vLV-aT~v~~~GiDip~-~~VI~~~~~~ 262 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLT-DWDFVV-TTDISEMGANFRA-GRVIDPRRCL 262 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSS-CCSEEE-ECGGGGSSCCCCC-SEEEECCEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccC-CceEEE-ECCHHHhCcCCCC-CEEEECCCcc
Confidence 899999999999999999999999999999976 46789999965 666665 6699999999999 9999988
Q ss_pred -----------------CCCCCChHHHHhHhhcccCCccc
Q 002077 896 -----------------LWWNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 896 -----------------p~WNp~~e~QAigRi~RiGQ~k~ 918 (972)
+|.++....|++||++|.|....
T Consensus 263 ~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g 302 (451)
T 2jlq_A 263 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED 302 (451)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred cccccccccceeeecccccCCHHHHHHhccccCCCCCCCc
Confidence 88999999999999999997443
No 66
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.25 E-value=2.7e-11 Score=147.44 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=81.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE-----
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----- 893 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~----- 893 (972)
++|||+......+.+...|+..++.+..++|. +|.++++.|.++ ++.||+ +|.+.++|||+. +++||+
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~VLV-aTdv~e~GIDip-v~~VI~~g~~~ 484 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDFVI-TTDISEMGANFG-ASRVIDCRKSV 484 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSEEE-ECGGGGTTCCCC-CSEEEECCEEC
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceEEE-ECchhhcceeeC-CcEEEECCCcc
Confidence 99999999999999999999999999999994 799999999976 666665 669999999999 999997
Q ss_pred ---------------ecCCCCCChHHHHhHhhcccCCcc
Q 002077 894 ---------------LDLWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 894 ---------------~Dp~WNp~~e~QAigRi~RiGQ~k 917 (972)
+|++.+++...|++||++|.|...
T Consensus 485 ~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~ 523 (673)
T 2wv9_A 485 KPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI 523 (673)
T ss_dssp CEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC
T ss_pred cceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC
Confidence 568888899999999999994333
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.23 E-value=1.4e-09 Score=129.67 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|..++++.|.+....+. ++|||+......+.|...|.+.||+...|+|
T Consensus 456 ~~eK~~al~~~I~~~~~~gq-----------------------------pVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhg 506 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQ-----------------------------PVLVGTTSIEKSELLSSMLKKKGIPHQVLNA 506 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----------------------------CEEEEESSHHHHHHHHHHHHTTTCCCEEECS
T ss_pred HHHHHHHHHHHHHHHhhCCC-----------------------------CEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 34699999999988766665 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC--------CCCEEEEecCCCCCChHHHHhHhhcccCCcccE
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV--------AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt--------~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 919 (972)
.....+|.-+...|+.+ .| +++|..+|.|++.. ...|||.+|++-++..+.|++||++|.|+.-..
T Consensus 507 kq~~rE~~ii~~ag~~g---~V-tVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 507 KYHEKEAEIVAKAGQKG---MV-TIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp CHHHHHHHHHHHHHSTT---CE-EEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred CchHHHHHHHHhCCCCC---eE-EEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 85433333333444433 34 56779999999997 567999999999999999999999999987653
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.23 E-value=1e-11 Score=149.58 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=80.1
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEE-----
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI----- 892 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI----- 892 (972)
.++|||+.....++.+...|++.|+....++|.+++.+ |..+ ..+ +|+++.+++.|||+. +++||
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~-~~~-VLVATdVaerGIDId-V~~VI~~Gl~ 466 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTI-GDV-VVVATDALMTGYTGD-FDSVIDCNTC 466 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSS-SCE-EEEECTTHHHHCCCC-BSEEEECCEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhC-CCc-EEEECChHHccCCCC-CcEEEecCcc
Confidence 39999999999999999999999999999999998764 4433 334 455779999999985 99888
Q ss_pred -----Eec-----------CCCCCChHHHHhHhhcccCCcccEEEEEEecCCC
Q 002077 893 -----LLD-----------LWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 893 -----~~D-----------p~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dT 929 (972)
+|| .|-++....||+||++| |..-. |.|+.++.
T Consensus 467 ~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e 515 (666)
T 3o8b_A 467 VTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGE 515 (666)
T ss_dssp EEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCC
T ss_pred cccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecch
Confidence 566 67788899999999999 65433 67776653
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.23 E-value=1.8e-11 Score=143.18 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=84.8
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE-----
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----- 893 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~----- 893 (972)
++|||+.....++.+...|+..|+.+..++|. +|.++++.|.++ ...||+ +|.++++|+|+.. ++||.
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g-~~~iLV-aT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG-DWDFVI-TTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC-CCSEEE-ESSCC---CCCSC-SEEEECCEEC
T ss_pred CEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC-CceEEE-ECChHHhCeecCC-CEEEECCccc
Confidence 99999999999999999999999999999995 678899999865 666655 6699999999999 99998
Q ss_pred ---------------ecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 894 ---------------LDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 894 ---------------~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
||+|.+++...|++||++|.|.... ..+.|+...
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 7899999999999999999996333 334555554
No 70
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.23 E-value=4.1e-11 Score=126.67 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=79.2
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++..+++ .+..|+...+|.|||+..+..++.....
T Consensus 46 ~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~------------------------------ 88 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC-------GLDLIVQAKSGTGKTCVFSTIALDSLVL------------------------------ 88 (230)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHHh------------------------------
Confidence 489999999998873 2447999999999999865544422110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhhhc
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELA 431 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~l~ 431 (972)
......+|||||. .|+.||.+++.++......+++.+++|..... ....+.
T Consensus 89 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 141 (230)
T 2oxc_A 89 ---------------------------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK 141 (230)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT
T ss_pred ---------------------------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc
Confidence 0123459999996 79999999999986543367888888865432 233456
Q ss_pred CCCEEEEchhhhhc
Q 002077 432 KYDVVLTTYSIVTN 445 (972)
Q Consensus 432 ~~DVVItTY~~l~~ 445 (972)
.++|+|+|++.+..
T Consensus 142 ~~~Iiv~Tp~~l~~ 155 (230)
T 2oxc_A 142 KCHIAVGSPGRIKQ 155 (230)
T ss_dssp SCSEEEECHHHHHH
T ss_pred CCCEEEECHHHHHH
Confidence 79999999999865
No 71
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.21 E-value=2.9e-11 Score=126.56 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=79.0
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++.++++. +.+|++..+|.|||+.++..++.....
T Consensus 36 ~~~~~Q~~~i~~~~~~-------~~~li~~~TGsGKT~~~~~~~~~~~~~------------------------------ 78 (220)
T 1t6n_A 36 HPSEVQHECIPQAILG-------MDVLCQAKSGMGKTAVFVLATLQQLEP------------------------------ 78 (220)
T ss_dssp CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHCCC------------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCCchhhhhhHHHHHhhhc------------------------------
Confidence 4899999999988832 347999999999999887777642211
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCC-hhhh-
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVEL- 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~-~~~l- 430 (972)
......+|||||. .|+.||.+++.++......+++.+++|...... ...+
T Consensus 79 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 131 (220)
T 1t6n_A 79 ---------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 131 (220)
T ss_dssp ---------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH
T ss_pred ---------------------------cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh
Confidence 0112359999996 789999999999875433688888888654321 1222
Q ss_pred -cCCCEEEEchhhhhc
Q 002077 431 -AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 -~~~DVVItTY~~l~~ 445 (972)
..++|+|+|++.+..
T Consensus 132 ~~~~~i~v~T~~~l~~ 147 (220)
T 1t6n_A 132 KNCPHIVVGTPGRILA 147 (220)
T ss_dssp HSCCSEEEECHHHHHH
T ss_pred cCCCCEEEeCHHHHHH
Confidence 346999999998865
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.21 E-value=4e-11 Score=125.80 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=74.1
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||..++.+++. .+.+|+...+|.|||++++..++.....
T Consensus 36 ~~~~~Q~~~i~~~~~-------~~~~lv~~pTGsGKT~~~~~~~l~~l~~------------------------------ 78 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDT------------------------------ 78 (224)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCT------------------------------
T ss_pred CCcHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHHHHHHHHHhc------------------------------
Confidence 599999999998873 2447999999999999854444321110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCC-CChhhhc
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRT-KDPVELA 431 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~-~~~~~l~ 431 (972)
......+|||||. .|+.||.+++.++.... .+++..++|.... .....+.
T Consensus 79 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 130 (224)
T 1qde_A 79 ---------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR 130 (224)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CT
T ss_pred ---------------------------cCCCceEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCC
Confidence 0122469999997 68899999999986543 6778887776533 2334456
Q ss_pred CCCEEEEchhhhhc
Q 002077 432 KYDVVLTTYSIVTN 445 (972)
Q Consensus 432 ~~DVVItTY~~l~~ 445 (972)
.++|+|+|++.+..
T Consensus 131 ~~~iiv~Tp~~l~~ 144 (224)
T 1qde_A 131 DAQIVVGTPGRVFD 144 (224)
T ss_dssp TCSEEEECHHHHHH
T ss_pred CCCEEEECHHHHHH
Confidence 69999999999865
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.21 E-value=2.4e-11 Score=125.65 Aligned_cols=108 Identities=25% Similarity=0.221 Sum_probs=78.5
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++.++++ .+..|+...+|.|||++++..++......
T Consensus 23 ~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~l~~~----------------------------- 66 (207)
T 2gxq_A 23 TPTPIQAAALPLALE-------GKDLIGQARTGTGKTLAFALPIAERLAPS----------------------------- 66 (207)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCCC-----------------------------
T ss_pred CCCHHHHHHHHHHcC-------CCCEEEECCCCChHHHHHHHHHHHHHhhc-----------------------------
Confidence 599999999999883 24579999999999998766655322110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCCh--hhh
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--VEL 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~--~~l 430 (972)
........+|||||. .|+.||.+++.+++. .+++..++|....... ...
T Consensus 67 -------------------------~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 118 (207)
T 2gxq_A 67 -------------------------QERGRKPRALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALL 118 (207)
T ss_dssp -------------------------CCTTCCCSEEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHH
T ss_pred -------------------------cccCCCCcEEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhh
Confidence 000223469999997 789999999999976 4778888876543221 123
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
..++|+|+|++.+..
T Consensus 119 ~~~~i~v~T~~~l~~ 133 (207)
T 2gxq_A 119 RGADAVVATPGRALD 133 (207)
T ss_dssp HCCSEEEECHHHHHH
T ss_pred CCCCEEEECHHHHHH
Confidence 578999999998865
No 74
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.20 E-value=5.9e-11 Score=143.47 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=85.1
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEE-------
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHV------- 891 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~V------- 891 (972)
++|||+......+.+...|.+.|+.+..++|. +|.++++.|.++ ...||+ +|.++++|||+. +++|
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g-~~~VLV-aTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT-DWDFVV-TTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS-CCSEEE-ECGGGGTTCCCC-CSEEEECCEEE
T ss_pred CEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC-CcEEEE-ECcHHHcCcccC-ceEEEECccee
Confidence 99999999999999999999999999999984 688999999976 666655 669999999996 8888
Q ss_pred -------------EEecCCCCCChHHHHhHhhcccCCcccEEEEEEec
Q 002077 892 -------------ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTI 926 (972)
Q Consensus 892 -------------I~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~ 926 (972)
|++|+|-++....|++||++|.|...-. .+.|+.
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 7777788888999999999999875443 344554
No 75
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.19 E-value=1.1e-09 Score=145.32 Aligned_cols=84 Identities=19% Similarity=0.103 Sum_probs=65.7
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE----ecC------CCCCChHHHHhHhhcc
Q 002077 843 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----LDL------WWNPTTEDQAVDRAHR 912 (972)
Q Consensus 843 ~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~----~Dp------~WNp~~e~QAigRi~R 912 (972)
.+..++|+++..+|..+.+.|.++ .++||+.+ ...+.|+||.+...||. ||. +.++....|++||++|
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G-~i~VLvaT-~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSG-AIQVVVAS-RSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHT-SBCEEEEE-GGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred CEEEECCCCCHHHHHHHHHHHHCC-CCeEEEEC-hHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 356799999999999999999986 78887755 88899999997666663 222 3456678899999999
Q ss_pred cCCcccEEEEEEecCC
Q 002077 913 IGQTRPVTVTRLTIRD 928 (972)
Q Consensus 913 iGQ~k~V~V~rli~~d 928 (972)
.|....=.++.|+...
T Consensus 1293 ~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTTCSCEEEEEEEEGG
T ss_pred CCCCCceEEEEEecch
Confidence 9997765666555443
No 76
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.14 E-value=1e-10 Score=120.89 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=78.0
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++..++. .+..++...+|.|||+.++..++.....
T Consensus 25 ~~~~~Q~~~i~~~~~-------~~~~lv~apTGsGKT~~~~~~~~~~~~~------------------------------ 67 (206)
T 1vec_A 25 KPSPIQEESIPIALS-------GRDILARAKNGTGKSGAYLIPLLERLDL------------------------------ 67 (206)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCSSSTTHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHcc-------CCCEEEECCCCCchHHHHHHHHHHHhcc------------------------------
Confidence 599999999998873 2457999999999998877665532211
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCC-hh-hh
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PV-EL 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~-~~-~l 430 (972)
......+|||||. .|+.||.+++.++......+++..++|...... .. ..
T Consensus 68 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 120 (206)
T 1vec_A 68 ---------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 120 (206)
T ss_dssp ---------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT
T ss_pred ---------------------------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC
Confidence 0122359999996 688999999999875433577888887653321 11 12
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
..++|+|+|++.+..
T Consensus 121 ~~~~i~v~T~~~l~~ 135 (206)
T 1vec_A 121 DTVHVVIATPGRILD 135 (206)
T ss_dssp SCCSEEEECHHHHHH
T ss_pred CCCCEEEeCHHHHHH
Confidence 468999999998865
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.13 E-value=7.2e-11 Score=125.02 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=79.2
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++.+++. .+..|+..++|.|||+.++..++.......
T Consensus 47 ~~~~~Q~~~i~~~~~-------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~---------------------------- 91 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ-------GKDVLGAAKTGSGKTLAFLVPVLEALYRLQ---------------------------- 91 (236)
T ss_dssp BCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHTT----------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEEeCCCCcHHHHHHHHHHHHHHhhc----------------------------
Confidence 589999999999883 244799999999999987765553221100
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhhhc
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELA 431 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~l~ 431 (972)
........+|||||. .|+.||.+++.++.... .+++..++|..... ....+.
T Consensus 92 -------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 145 (236)
T 2pl3_A 92 -------------------------WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERIN 145 (236)
T ss_dssp -------------------------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHHT
T ss_pred -------------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhCC
Confidence 000122459999997 78999999999987532 57888888865432 234557
Q ss_pred CCCEEEEchhhhhc
Q 002077 432 KYDVVLTTYSIVTN 445 (972)
Q Consensus 432 ~~DVVItTY~~l~~ 445 (972)
.++|+|+|++.+..
T Consensus 146 ~~~iiv~Tp~~l~~ 159 (236)
T 2pl3_A 146 NINILVCTPGRLLQ 159 (236)
T ss_dssp TCSEEEECHHHHHH
T ss_pred CCCEEEECHHHHHH
Confidence 89999999999864
No 78
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.09 E-value=4.1e-10 Score=119.58 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=72.1
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||..++..+++. +..|+...+|.|||+.++..++.....
T Consensus 52 ~~~~~Q~~ai~~i~~~-------~~~li~apTGsGKT~~~~l~~l~~l~~------------------------------ 94 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKG-------YDVIAQAQSGTGKTATFAISILQQLEI------------------------------ 94 (237)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEEECCCSSHHHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCCcHHHHHHHHHHHHHHh------------------------------
Confidence 4899999999988832 347999999999999866666532210
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCC-CChhhh-
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRT-KDPVEL- 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~-~~~~~l- 430 (972)
......+|||||. .|+.||.+++.++.... .+.+..+.|.... .....+
T Consensus 95 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~ 146 (237)
T 3bor_A 95 ---------------------------EFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQ 146 (237)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC------------
T ss_pred ---------------------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHh
Confidence 0122459999996 68999999999987533 4666666665432 222233
Q ss_pred -cCCCEEEEchhhhhc
Q 002077 431 -AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 -~~~DVVItTY~~l~~ 445 (972)
..++|+|+|++.+..
T Consensus 147 ~~~~~Ilv~Tp~~l~~ 162 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFD 162 (237)
T ss_dssp -CCCSEEEECHHHHHH
T ss_pred cCCCCEEEECHHHHHH
Confidence 238999999988764
No 79
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.08 E-value=5e-09 Score=139.10 Aligned_cols=85 Identities=16% Similarity=0.071 Sum_probs=67.9
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE----ecCC------CCCChHHHHhHhhcc
Q 002077 843 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----LDLW------WNPTTEDQAVDRAHR 912 (972)
Q Consensus 843 ~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~----~Dp~------WNp~~e~QAigRi~R 912 (972)
.+...+|+|+..+|..+-+.|.++ .++||+. |.+++.|+||.+...||. |||. -++....|++||++|
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~G-~i~vlva-TsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFADK-HIQVLVS-TATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHTT-CCCEEEE-CHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCC-CCeEEEE-cchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 356789999999999999999976 7787775 599999999998887774 6654 356688999999999
Q ss_pred cCCcccEEEEEEecCCC
Q 002077 913 IGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 913 iGQ~k~V~V~rli~~dT 929 (972)
.|....=.++.+...+.
T Consensus 458 ~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGE 474 (1724)
T ss_dssp TTTCSCEEEEEEEESTT
T ss_pred CCCCCccEEEEEecchh
Confidence 99876655655665554
No 80
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.06 E-value=3.1e-10 Score=121.54 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=78.3
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++.+++. .+..|+...+|.|||+.++..++....... ..
T Consensus 45 ~~~~~Q~~~i~~i~~-------~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~--------------------~~------ 91 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE-------HRDIMACAQTGSGKTAAFLIPIINHLVCQD--------------------LN------ 91 (253)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHTTC--------------------C-------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhhc--------------------cc------
Confidence 599999999999883 244799999999999987766654321100 00
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhhh-
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVEL- 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~l- 430 (972)
...........+|||||. .|+.||.+++.++.... .+++..++|..... ....+
T Consensus 92 ----------------------~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 148 (253)
T 1wrb_A 92 ----------------------QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQ 148 (253)
T ss_dssp ---------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHS
T ss_pred ----------------------cccccccCCceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhC
Confidence 000000222469999997 68999999999986533 57777777765332 22222
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
..+||+|+|++.+..
T Consensus 149 ~~~~Ivv~Tp~~l~~ 163 (253)
T 1wrb_A 149 MGCHLLVATPGRLVD 163 (253)
T ss_dssp SCCSEEEECHHHHHH
T ss_pred CCCCEEEECHHHHHH
Confidence 468999999999865
No 81
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.06 E-value=2.2e-10 Score=119.89 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=75.5
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++.++++. +..|+...+|.|||+.++..++.....
T Consensus 26 ~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~~~~l~~l~~------------------------------ 68 (219)
T 1q0u_A 26 KPTEIQERIIPGALRG-------ESMVGQSQTGTGKTHAYLLPIMEKIKP------------------------------ 68 (219)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEECCSSHHHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHHHh------------------------------
Confidence 5899999999998843 347999999999999866655532110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCC---CeEEEEEeCCCCCC-Chh
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKA---ALSVLIYHGGSRTK-DPV 428 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~---~l~vlvy~G~~r~~-~~~ 428 (972)
......+|||||. .|+.||.+++.++..... .+.+..++|..... ...
T Consensus 69 ---------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 121 (219)
T 1q0u_A 69 ---------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 121 (219)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC
T ss_pred ---------------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH
Confidence 0122459999997 689999999998864311 36677777764221 111
Q ss_pred hh-cCCCEEEEchhhhhc
Q 002077 429 EL-AKYDVVLTTYSIVTN 445 (972)
Q Consensus 429 ~l-~~~DVVItTY~~l~~ 445 (972)
.+ ..+||+|+|++.+..
T Consensus 122 ~~~~~~~Iiv~Tp~~l~~ 139 (219)
T 1q0u_A 122 KLNVQPHIVIGTPGRIND 139 (219)
T ss_dssp CCSSCCSEEEECHHHHHH
T ss_pred HcCCCCCEEEeCHHHHHH
Confidence 12 368999999998865
No 82
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.98 E-value=5.6e-10 Score=119.66 Aligned_cols=107 Identities=19% Similarity=0.099 Sum_probs=76.8
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++..++. .+..|+...+|.|||++++..++.....
T Consensus 65 ~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~il~~l~~------------------------------ 107 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ-------GRDIIGLAETGSGKTGAFALPILNALLE------------------------------ 107 (249)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHH------------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEEcCCCCCchhHhHHHHHHHHhc------------------------------
Confidence 599999999998882 2457999999999999876666532211
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCC-h-hhh
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-P-VEL 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~-~-~~l 430 (972)
......+|||||. .|+.||.+++.++.... .+++.+++|...... . ...
T Consensus 108 ---------------------------~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 159 (249)
T 3ber_A 108 ---------------------------TPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALA 159 (249)
T ss_dssp ---------------------------SCCSSCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHH
T ss_pred ---------------------------CCCCceEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhc
Confidence 0112358999997 68899999999875432 467777777653221 1 123
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
..++|+|+|++.+..
T Consensus 160 ~~~~I~v~Tp~~l~~ 174 (249)
T 3ber_A 160 KKPHIIIATPGRLID 174 (249)
T ss_dssp TCCSEEEECHHHHHH
T ss_pred CCCCEEEECHHHHHH
Confidence 578999999999865
No 83
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.97 E-value=1.8e-09 Score=113.64 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=74.1
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++..+++ .+..|+.-.+|.|||+.++..++.......
T Consensus 42 ~~~~~Q~~~i~~~~~-------~~~~l~~apTGsGKT~~~~l~~~~~l~~~~---------------------------- 86 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ-------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQP---------------------------- 86 (228)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHC-------------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhcc----------------------------
Confidence 599999999998872 244799999999999987665543221100
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhh-h
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVE-L 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~-l 430 (972)
..........+|||||. .|+.||.+++.++... .+++..++|..... .... .
T Consensus 87 -----------------------~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 141 (228)
T 3iuy_A 87 -----------------------ISREQRNGPGMLVLTPTRELALHVEAECSKYSYK--GLKSICIYGGRNRNGQIEDIS 141 (228)
T ss_dssp -----------------------------CCCSEEEECSSHHHHHHHHHHHHHHCCT--TCCEEEECC------CHHHHH
T ss_pred -----------------------chhhccCCCcEEEEeCCHHHHHHHHHHHHHhccc--CceEEEEECCCChHHHHHHhc
Confidence 00000233459999996 5889999999998643 56777776654332 3333 3
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
..+||+|+|++.+..
T Consensus 142 ~~~~iiv~Tp~~l~~ 156 (228)
T 3iuy_A 142 KGVDIIIATPGRLND 156 (228)
T ss_dssp SCCSEEEECHHHHHH
T ss_pred CCCCEEEECHHHHHH
Confidence 568999999998865
No 84
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.96 E-value=4.6e-09 Score=128.11 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCC
Q 002077 772 SKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTM 851 (972)
Q Consensus 772 sKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~ 851 (972)
.++..+++.|....+.+. ++|||+....+.+.|...|.+.|+.+..++|.+
T Consensus 423 ~~~~~Ll~~l~~~~~~~~-----------------------------~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~ 473 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGE-----------------------------RTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 473 (664)
T ss_dssp THHHHHHHHHHHHHHTTC-----------------------------EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred chHHHHHHHHHHHHhcCC-----------------------------EEEEEECCHHHHHHHHHHHHhcCCCceeecCCC
Confidence 577788888877766655 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC-----CCCCChHHHHhHhhcccCCcccEEEEEEec
Q 002077 852 SLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL-----WWNPTTEDQAVDRAHRIGQTRPVTVTRLTI 926 (972)
Q Consensus 852 s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp-----~WNp~~e~QAigRi~RiGQ~k~V~V~rli~ 926 (972)
+..+|.++++.|..+ .+.||+ ++.++++|+|+..+++||++|. ++++....|++||++|.|. -.++.|+.
T Consensus 474 ~~~~R~~~~~~f~~g-~~~VLv-aT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~ 548 (664)
T 1c4o_A 474 DAFKRQALIRDLRLG-HYDCLV-GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYAD 548 (664)
T ss_dssp CHHHHHHHHHHHHTT-SCSEEE-ESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECS
T ss_pred CHHHHHHHHHHhhcC-CceEEE-ccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEc
Confidence 999999999999965 666555 6699999999999999999998 8999999999999999863 24555666
Q ss_pred CCC
Q 002077 927 RDT 929 (972)
Q Consensus 927 ~dT 929 (972)
..+
T Consensus 549 ~~~ 551 (664)
T 1c4o_A 549 RVS 551 (664)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 85
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.94 E-value=7.2e-09 Score=126.33 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCC
Q 002077 772 SKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTM 851 (972)
Q Consensus 772 sKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~ 851 (972)
.++..+++.|....+.+. ++|||+......+.|...|.+.|+++..++|.+
T Consensus 429 ~~~~~Ll~~l~~~~~~~~-----------------------------~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~ 479 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNE-----------------------------RVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEI 479 (661)
T ss_dssp THHHHHHHHHHHHHTTTC-----------------------------EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred chHHHHHHHHHHHHhcCC-----------------------------eEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCC
Confidence 467778787877666555 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC-----CCCCChHHHHhHhhcccCCcccEEEEEEec
Q 002077 852 SLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL-----WWNPTTEDQAVDRAHRIGQTRPVTVTRLTI 926 (972)
Q Consensus 852 s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp-----~WNp~~e~QAigRi~RiGQ~k~V~V~rli~ 926 (972)
+..+|.++++.|..+ .+.||+ ++.+.++|+++..+++||++|. ++++....|++||++|- ++-.++.|+.
T Consensus 480 ~~~~R~~~l~~f~~g-~~~VLV-aT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~ 554 (661)
T 2d7d_A 480 KTLERIEIIRDLRLG-KYDVLV-GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYAD 554 (661)
T ss_dssp CHHHHHHHHHHHHHT-SCSEEE-ESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECS
T ss_pred CHHHHHHHHHHHhcC-CeEEEE-ecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEe
Confidence 999999999999975 666555 6699999999999999999998 89999999999999997 2344555676
Q ss_pred CCC
Q 002077 927 RDT 929 (972)
Q Consensus 927 ~dT 929 (972)
..+
T Consensus 555 ~~~ 557 (661)
T 2d7d_A 555 KIT 557 (661)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.93 E-value=1.8e-09 Score=114.96 Aligned_cols=108 Identities=21% Similarity=0.220 Sum_probs=74.8
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++..+++ .+..|+.-.+|.|||+.++..++.....
T Consensus 51 ~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~------------------------------ 93 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH-------GRELLASAPTGSGKTLAFSIPILMQLKQ------------------------------ 93 (245)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHCS------------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHhh------------------------------
Confidence 589999999998873 2447999999999999866555432211
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCC---CChhh
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVE 429 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~---~~~~~ 429 (972)
.......+|||||. .|+.||.+++.+++... .+++..++|.... .....
T Consensus 94 --------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T 3dkp_A 94 --------------------------PANKGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKS 146 (245)
T ss_dssp --------------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTS
T ss_pred --------------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhh
Confidence 00122359999996 58999999999987543 5666666554211 11122
Q ss_pred hcCCCEEEEchhhhhc
Q 002077 430 LAKYDVVLTTYSIVTN 445 (972)
Q Consensus 430 l~~~DVVItTY~~l~~ 445 (972)
...+||+|+|++.+..
T Consensus 147 ~~~~~I~v~Tp~~l~~ 162 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIY 162 (245)
T ss_dssp CCCCCEEEECHHHHHH
T ss_pred cCCCCEEEECHHHHHH
Confidence 3568999999999865
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.88 E-value=1.1e-07 Score=113.39 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=47.6
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEE-EecCccccccCCCC----CCEEE
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVML-MSLKAGNLGLNMVA----ASHVI 892 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlL-iSlkagg~GLNLt~----A~~VI 892 (972)
.++|||...-.+++.+...|.. ++ +.+.|.. .+|.+++++|+.+. .||+ +.+....+|+|+.. +..||
T Consensus 385 g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~--~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 385 KSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK--YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp SEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC--CEEEEEC---------------CEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC--eEEEEEecCceecceecCCCcccccEEE
Confidence 3899999999999998888865 33 3455554 46889999998742 3444 25688999999997 68899
Q ss_pred EecCCCCCC
Q 002077 893 LLDLWWNPT 901 (972)
Q Consensus 893 ~~Dp~WNp~ 901 (972)
++.+|+-+.
T Consensus 458 i~~lPf~~~ 466 (540)
T 2vl7_A 458 LAGLPYPNV 466 (540)
T ss_dssp EESCCCCCT
T ss_pred EECCCCCCC
Confidence 999887444
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.77 E-value=6.3e-09 Score=110.67 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=75.6
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.++|||.+++..+++. +..|+.-.+|.|||+..+..++.......
T Consensus 51 ~~~~~Q~~~i~~~~~g-------~~~l~~apTGsGKT~~~~l~~l~~l~~~~---------------------------- 95 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSG-------LDMVGVAQTGSGKTLSYLLPAIVHINHQP---------------------------- 95 (242)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEEECTTSCHHHHHHHHHHHHHHTSC----------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCcCHHHHHHHHHHHHHHHhcc----------------------------
Confidence 4899999999888732 34689999999999987665553221100
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhh-h
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVE-L 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~-l 430 (972)
.........+|||||. .|+.||.+++.++.... .+++..++|..... .... .
T Consensus 96 ------------------------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 150 (242)
T 3fe2_A 96 ------------------------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLE 150 (242)
T ss_dssp ------------------------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHH
T ss_pred ------------------------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhc
Confidence 0000223458999996 58899999998875432 57777777764322 1122 2
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
..+||+|+|++.+..
T Consensus 151 ~~~~I~v~Tp~~l~~ 165 (242)
T 3fe2_A 151 RGVEICIATPGRLID 165 (242)
T ss_dssp HCCSEEEECHHHHHH
T ss_pred CCCCEEEECHHHHHH
Confidence 458999999998864
No 89
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.70 E-value=1.9e-08 Score=108.59 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=75.5
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|+|..++..++.. +..|+.-++|.|||+.++..++.......
T Consensus 76 ~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~l~~l~~l~~~~---------------------------- 120 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEG-------RDLLAAAKTGSGKTLAFLIPAVELIVKLR---------------------------- 120 (262)
T ss_dssp BCCHHHHHHHHHHHHT-------CCCEECCCTTSCHHHHHHHHHHHHHHHTT----------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CcEEEEccCCCCchHHHHHHHHHHHHhcc----------------------------
Confidence 5999999999887742 34699999999999987665553221100
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhhh-
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVEL- 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~l- 430 (972)
........+|||||. .|+.||.+++.+++... ...+..+.|..... ....+
T Consensus 121 -------------------------~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 174 (262)
T 3ly5_A 121 -------------------------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLG 174 (262)
T ss_dssp -------------------------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHH
T ss_pred -------------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhc
Confidence 000122458999996 68999999999987643 45666666654322 11222
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
..++|+|+|.+.+..
T Consensus 175 ~~~~Iiv~Tp~~l~~ 189 (262)
T 3ly5_A 175 NGINIIVATPGRLLD 189 (262)
T ss_dssp HCCSEEEECHHHHHH
T ss_pred CCCCEEEEcHHHHHH
Confidence 458999999998854
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.51 E-value=5.6e-07 Score=99.06 Aligned_cols=110 Identities=19% Similarity=0.123 Sum_probs=74.8
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.++|+|..++..++.. ..+..|+.-..|.|||+..+.-++.....
T Consensus 114 ~pt~iQ~~ai~~il~~-----~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------------------------------ 158 (300)
T 3fmo_B 114 RPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFVLAMLSQVEP------------------------------ 158 (300)
T ss_dssp SCCHHHHHHHHHHTSS-----SCCCEEEECCTTSSHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHHcC-----CCCeEEEECCCCCCccHHHHHHHHHhhhc------------------------------
Confidence 5889999999877722 11446888999999999865444421110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcC
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~ 432 (972)
......+|||||. .|..|+.+++.++......+.+..+.|...... .....
T Consensus 159 ---------------------------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 210 (300)
T 3fmo_B 159 ---------------------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-GQKIS 210 (300)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT-TCCCC
T ss_pred ---------------------------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh-hhcCC
Confidence 0112248999996 588999999998765333577777777654322 22456
Q ss_pred CCEEEEchhhhhcc
Q 002077 433 YDVVLTTYSIVTNE 446 (972)
Q Consensus 433 ~DVVItTY~~l~~e 446 (972)
.+|+|+|.+.+...
T Consensus 211 ~~IlV~TP~~l~~~ 224 (300)
T 3fmo_B 211 EQIVIGTPGTVLDW 224 (300)
T ss_dssp CSEEEECHHHHHHH
T ss_pred CCEEEECHHHHHHH
Confidence 79999999988653
No 91
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=4e-07 Score=76.60 Aligned_cols=52 Identities=27% Similarity=0.566 Sum_probs=44.4
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~ 735 (972)
....|+||.+.+..|+.+.|||+||..|+..|+......|| .|+..+..+.+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCT--ACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCT--TTCCCCCTTTC
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCC--CCCcCCChhhc
Confidence 35689999999999999999999999999999976667888 68888766543
No 92
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.23 E-value=4.3e-07 Score=79.04 Aligned_cols=50 Identities=16% Similarity=0.365 Sum_probs=43.2
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||.+.+.+||+++|||+||..||..|+......|| .|+..+...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP--~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCP--KSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCT--TTCCBCSSC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCC--CCcCCCChh
Confidence 35689999999999999999999999999999986677898 588776543
No 93
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.17 E-value=0.0003 Score=85.99 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=92.2
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHH-----------
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLN----------- 838 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~----------- 838 (972)
...|+.++++.+.+..+.|. -|||++.....-+.|...|+
T Consensus 425 ~~~K~~AIv~eI~~~~~~Gq-----------------------------PVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~ 475 (997)
T 2ipc_A 425 EKGKFYAVVEEIAEKYERGQ-----------------------------PVLVGTISIEKSERLSQMLKEPRLYLPRLEM 475 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----------------------------CEEEECSSHHHHHHHHHHHHCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-----------------------------CEEEEeCCHHHHHHHHHHHhhccccchhhhh
Confidence 45799999999999888887 89999999999888888888
Q ss_pred -----------------------------------------------------------------hCCCcEEEEeCCCCH
Q 002077 839 -----------------------------------------------------------------QHCIQYRRLDGTMSL 853 (972)
Q Consensus 839 -----------------------------------------------------------------~~gi~~~~ldGs~s~ 853 (972)
+.||+...|.....
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h- 554 (997)
T 2ipc_A 476 RLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH- 554 (997)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH-
T ss_pred hhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch-
Confidence 67899888987753
Q ss_pred HHHHHHHHhhhcCCCeeEEEEecCccccccCCCCC-------------------C-------------------------
Q 002077 854 PARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA-------------------S------------------------- 889 (972)
Q Consensus 854 ~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A-------------------~------------------------- 889 (972)
+.-.++|.+=-.... | -++|.-+|.|-++.=. .
T Consensus 555 e~EAeIIAqAG~~Ga--V-TIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (997)
T 2ipc_A 555 AREAEIVAQAGRSKT--V-TIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQEL 631 (997)
T ss_dssp HHHHHHHHTTTSTTC--E-EEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCe--E-EEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhh
Confidence 333455555433222 3 4566888888775432 1
Q ss_pred ------------------------------EEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 890 ------------------------------HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 890 ------------------------------~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
|||--+.+=|...+.|.-||++|.|..-.-..|
T Consensus 632 ~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~ 694 (997)
T 2ipc_A 632 GIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY 694 (997)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred hhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEE
Confidence 899999999999999999999999987764443
No 94
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.10 E-value=1.3e-06 Score=75.93 Aligned_cols=52 Identities=19% Similarity=0.534 Sum_probs=43.3
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCC------CCCCCCcccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD------DNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~------~~~cp~~~Cr~~l~~~~~ 735 (972)
....|+||.+.+..|+.++|||.||..|+..|+... ...|| .||..+....+
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP--~Cr~~~~~~~l 68 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCP--VCGISYSFEHL 68 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCS--SSCCCCCSSGG
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCC--CCCCcCCHhhC
Confidence 456899999999999999999999999999998753 45787 68888765443
No 95
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.06 E-value=1.4e-06 Score=79.77 Aligned_cols=49 Identities=22% Similarity=0.729 Sum_probs=42.8
Q ss_pred ccccccCCCCCCCccc-ccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 683 SAICCVCSDPPEDSVV-TMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vi-t~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
...|+||++.+..|+. +.|||.||..||..|+......|| .||..+...
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP--~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCP--HCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCT--TTCCBCCGG
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCC--CCCCcCCHH
Confidence 4579999999999999 999999999999999987667888 688877543
No 96
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=8.1e-07 Score=80.43 Aligned_cols=52 Identities=19% Similarity=0.450 Sum_probs=43.3
Q ss_pred cccccccCCCCCCCccccc-CCcchhhhhHhhhhcCC-----CCCCCCcccccc-cccc
Q 002077 682 SSAICCVCSDPPEDSVVTM-CGHVFCYQCASEYITGD-----DNMCPAPRCKEQ-LGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~-CgH~fC~~Ci~~~~~~~-----~~~cp~~~Cr~~-l~~~ 733 (972)
....|+||.+.+.+||+++ |||+||..||..|+... ...||..+|+.. +...
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 3567999999999999995 99999999999999753 458998888866 5443
No 97
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.03 E-value=2.8e-06 Score=74.68 Aligned_cols=52 Identities=21% Similarity=0.578 Sum_probs=43.3
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCC-----CCCCCCcccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD-----DNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~-----~~~cp~~~Cr~~l~~~~~ 735 (972)
....|+||.+.+..|++++|||.||..|+..|+... ...|| .|+..+..+.+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP--~Cr~~~~~~~~ 74 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCP--VCRVPYPFGNL 74 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCT--TTCCCCCTTCC
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCC--CCCCcCCHHhC
Confidence 356899999999999999999999999999998753 55787 78888766543
No 98
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=2.5e-06 Score=73.04 Aligned_cols=50 Identities=30% Similarity=0.683 Sum_probs=42.0
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcC--CCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG--DDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~--~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||.+.+..|+.++|||+||..|+..|+.. ....|| .|+..+..+
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP--~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP--LCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCS--SSCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCC--CCCCcCCcc
Confidence 45789999999999999999999999999999973 455788 688876543
No 99
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.01 E-value=9.2e-06 Score=75.57 Aligned_cols=49 Identities=27% Similarity=0.699 Sum_probs=41.4
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCC--CCCCCcccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDD--NMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~--~~cp~~~Cr~~l~~~ 733 (972)
...|+||.+.+..|+.++|||.||..|+..|+.... ..|| .|+..+...
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP--~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP--LCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCT--TTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCc--CCCCcCCHh
Confidence 468999999999999999999999999999997543 4777 688776553
No 100
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.01 E-value=1.5e-06 Score=79.63 Aligned_cols=48 Identities=10% Similarity=-0.017 Sum_probs=41.1
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
....|+||.+.+.+||+++|||+||..||..|+.. ...|| .|+..+..
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP--~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDP--FNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCS--SSCCBCCT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCC--CCCCCCCh
Confidence 45789999999999999999999999999999974 56788 57766654
No 101
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.01 E-value=3.8e-06 Score=82.76 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=42.5
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
...|+||.+.+.+|++++|||.||..||..|+......|| .||..+...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCP--ACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCT--TTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCC--CCCccCCCC
Confidence 3579999999999999999999999999999987666898 688776553
No 102
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.00 E-value=1.3e-06 Score=77.45 Aligned_cols=49 Identities=12% Similarity=-0.018 Sum_probs=41.5
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||.+.+.+||+++|||+||..||..|+.. ...|| .|+..+...
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP--~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDP--FNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCT--TTCCBCCGG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCC--CCcCCCChH
Confidence 35789999999999999999999999999999985 46788 577666543
No 103
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.00 E-value=8.4e-06 Score=97.31 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=46.5
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHHHhhhcCCCeeEEEEec-CccccccCCC-----CCCEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDG-TMSLPARDRAVKDFNTDREITVMLMSL-KAGNLGLNMV-----AASHV 891 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG-s~s~~~R~~~I~~F~~~~~~~VlLiSl-kagg~GLNLt-----~A~~V 891 (972)
.+|||-..-.+++.+.. ..++++. +.| .++ +.+.++.|+..+. .||+... ....+|+|+. .+..|
T Consensus 395 ~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~~~-~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISANNK-VLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp EEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSSSS-CEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhcCC-eEEEEEecceecccccccccCCcceeEE
Confidence 78887777767776665 2344433 333 233 4568888964333 5555543 6889999999 36778
Q ss_pred EEecCCC
Q 002077 892 ILLDLWW 898 (972)
Q Consensus 892 I~~Dp~W 898 (972)
|+.-+|+
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 8877666
No 104
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=4.6e-06 Score=73.34 Aligned_cols=52 Identities=21% Similarity=0.625 Sum_probs=43.2
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcC-----CCCCCCCcccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG-----DDNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~-----~~~~cp~~~Cr~~l~~~~~ 735 (972)
....|+||.+.+..|+.++|||+||..|+..|+.. ....|| .|+..+....+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP--~Cr~~~~~~~~ 74 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCP--VCRISYQPENI 74 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCT--TTCCSSCSSSC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCC--CCCCccCHHhc
Confidence 45789999999999999999999999999999865 356788 68888765443
No 105
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.97 E-value=2.9e-06 Score=80.79 Aligned_cols=48 Identities=25% Similarity=0.633 Sum_probs=42.0
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
...|+||.+.+..|+.++|||.||..||..|+......|| .||..+..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCP--ACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCT--TTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCC--CCCccCCC
Confidence 4579999999999999999999999999999986666888 68877654
No 106
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=2.4e-06 Score=72.87 Aligned_cols=50 Identities=26% Similarity=0.627 Sum_probs=42.3
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~ 734 (972)
....|.||++.+.+++.++|||+||..||..|+... ..|| .||..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP--~Cr~~~~~~~ 63 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCA--LCRQEIPEDF 63 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCS--SSCCBCCHHH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCc--CcCchhCHhh
Confidence 456899999999999999999999999999998654 6788 6888776543
No 107
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.95 E-value=2.5e-06 Score=77.79 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=41.5
Q ss_pred cccccccCCCCCCCcccccCC-cchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCG-HVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~Cg-H~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||.+.+.+||+++|| |+||..||..|+.. ...|| .|+..+...
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP--~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDP--FNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCT--TTCSBCCTT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCC--CCCCCCChh
Confidence 357899999999999999999 99999999999975 56788 577766543
No 108
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=4.8e-06 Score=71.20 Aligned_cols=49 Identities=24% Similarity=0.595 Sum_probs=41.4
Q ss_pred cccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||++.+.+|+.+ .|||+||..||..|+.. ...|| .||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP--~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCP--KCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCT--TTCCCCCSS
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCC--CcCcccCcc
Confidence 356899999999999886 99999999999999965 56888 688877654
No 109
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=4e-06 Score=69.66 Aligned_cols=42 Identities=31% Similarity=0.683 Sum_probs=36.6
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcC--CCCCCCC
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG--DDNMCPA 723 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~--~~~~cp~ 723 (972)
....|+||++.+.+|++++|||+||..||.+|+.. ....||.
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence 45789999999999999999999999999999974 4457873
No 110
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.92 E-value=4.4e-06 Score=71.94 Aligned_cols=46 Identities=28% Similarity=0.841 Sum_probs=39.4
Q ss_pred cccccccCCCCCCCccccc-CCcchhhhhHhhhhcCC-CCCCCCcccccc
Q 002077 682 SSAICCVCSDPPEDSVVTM-CGHVFCYQCASEYITGD-DNMCPAPRCKEQ 729 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~-CgH~fC~~Ci~~~~~~~-~~~cp~~~Cr~~ 729 (972)
....|+||++.+.+|+.++ |||.||..||..|+... ...|| .||..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP--~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCP--TCHQN 61 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCS--SSCCS
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCC--CCCCc
Confidence 3568999999999999999 99999999999999754 35788 57775
No 111
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.90 E-value=5.5e-06 Score=80.38 Aligned_cols=47 Identities=28% Similarity=0.747 Sum_probs=40.1
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
...|+||.+.+.+|++++|||.||..||..|+.. ...|| .||..+..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP--~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECP--ICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCT--TTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCC--CCCCcCCC
Confidence 4579999999999999999999999999999864 46788 68877643
No 112
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.89 E-value=2.5e-06 Score=92.48 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=42.6
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||.+.+.+||+++|||+||..||..|+......|| .|+..+...
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP--~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNP--VTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCT--TTCCCCCGG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCc--CCCCCCchh
Confidence 35789999999999999999999999999999986555688 688777543
No 113
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=7.3e-06 Score=66.65 Aligned_cols=42 Identities=33% Similarity=0.800 Sum_probs=36.4
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcC--CCCCCCC
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG--DDNMCPA 723 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~--~~~~cp~ 723 (972)
....|.||++.+..|++++|||+||..||..|+.. ....||.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 45689999999999999999999999999999764 4567873
No 114
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=4.6e-06 Score=73.05 Aligned_cols=47 Identities=32% Similarity=0.686 Sum_probs=40.5
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
....|+||.+.+..|++++|||+||..|+..|+.. ...|| .|+..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCY--ICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCS--SSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCC--CcCcccc
Confidence 35689999999999999999999999999999864 56788 6887764
No 115
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.89 E-value=7.7e-06 Score=73.39 Aligned_cols=47 Identities=28% Similarity=0.795 Sum_probs=39.8
Q ss_pred cccccccCCCCCCCccccc-CCcchhhhhHhhhhcCC-CCCCCCccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTM-CGHVFCYQCASEYITGD-DNMCPAPRCKEQL 730 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~-CgH~fC~~Ci~~~~~~~-~~~cp~~~Cr~~l 730 (972)
....|+||.+.+.+|+.++ |||.||..||..|+... ...|| .|+..+
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCP--TCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCT--TTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCc--CCCCcC
Confidence 3568999999999999999 99999999999998643 36888 577764
No 116
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.88 E-value=8.2e-06 Score=81.64 Aligned_cols=47 Identities=28% Similarity=0.744 Sum_probs=41.2
Q ss_pred ccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 683 SAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
...|+||.+.+.+|+.+ +|||+||..||..|+......|| .|+..+.
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECP--TCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCT--TTCCBCC
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCC--CCCCcCC
Confidence 45799999999999987 99999999999999987677888 6887764
No 117
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.87 E-value=3.4e-06 Score=85.02 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=42.0
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||.+.+.+||+++|||+||..||..|+...+..|| .|+..+...
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP--~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDP--VTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCT--TTCCBCCGG
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCC--CCcCCCChh
Confidence 45789999999999999999999999999999976544688 577766543
No 118
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.87 E-value=3.9e-06 Score=70.22 Aligned_cols=49 Identities=24% Similarity=0.649 Sum_probs=39.7
Q ss_pred ccccccCCC-CCCCc----ccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 683 SAICCVCSD-PPEDS----VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d-~~~~~----vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
...|+||.+ ....| +++.|||+||..|+..|+......|| .|+..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCP--ECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCT--TTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCC--CCCCccccc
Confidence 457999999 56555 56899999999999999876667888 688877654
No 119
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.83 E-value=5.3e-06 Score=77.79 Aligned_cols=48 Identities=21% Similarity=0.629 Sum_probs=41.9
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
...|+||.+.+..|+.++|||.||..||..|+......|| .|+..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCP--FCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCT--TTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCC--CCCcccCc
Confidence 4579999999999999999999999999999987677898 68877653
No 120
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=7.8e-06 Score=72.50 Aligned_cols=50 Identities=22% Similarity=0.601 Sum_probs=41.9
Q ss_pred cccccccCCCCCCC----cccccCCcchhhhhHhhhhcCC--CCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPED----SVVTMCGHVFCYQCASEYITGD--DNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~----~vit~CgH~fC~~Ci~~~~~~~--~~~cp~~~Cr~~l~~~ 733 (972)
....|+||.+.+.. |++++|||.||..|+..|+... ...|| .||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP--~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCP--FCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCT--TTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCC--CCCCcccch
Confidence 45689999999888 9999999999999999999765 46788 688876554
No 121
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.81 E-value=1.4e-05 Score=72.82 Aligned_cols=47 Identities=19% Similarity=0.603 Sum_probs=40.0
Q ss_pred ccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 683 SAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
...|+||.+.+.+|+.+ +|||.||..|+..|+.. ...|| .|+..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP--~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCP--TCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCT--TTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCC--CCCCcCCh
Confidence 45799999999999887 89999999999999974 46888 68877654
No 122
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.79 E-value=4.1e-06 Score=79.00 Aligned_cols=51 Identities=31% Similarity=0.564 Sum_probs=43.5
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~ 734 (972)
....|+||.+.+..|+.++|||+||..||..|+......|| .||..+....
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~~~ 67 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP--VDNEILLENQ 67 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCT--TTCCBCCGGG
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCC--CCCCCcCHHh
Confidence 35689999999999999999999999999999987666898 6887776543
No 123
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.75 E-value=4.8e-06 Score=69.09 Aligned_cols=49 Identities=35% Similarity=0.837 Sum_probs=40.3
Q ss_pred ccccccCCCCCCCc-------ccccCCcchhhhhHhhhhcCCCCCCCCccccccccccc
Q 002077 683 SAICCVCSDPPEDS-------VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734 (972)
Q Consensus 683 ~~~C~iC~d~~~~~-------vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~ 734 (972)
...|+||++.+..+ +.+.|||+||..|+..|+.. ...|| .||..+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP--~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCP--TCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCT--TTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCC--CCCccCCccc
Confidence 46899999987665 78899999999999999876 56888 6888776543
No 124
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.75 E-value=5.2e-06 Score=70.56 Aligned_cols=49 Identities=35% Similarity=0.873 Sum_probs=40.6
Q ss_pred cccccccCCCCCCCc-------ccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDS-------VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~-------vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||++.+..+ +.+.|||+||..|+..|+... ..|| .||..+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP--~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCP--TCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCT--TTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCC--CCCCccChh
Confidence 467899999988776 888999999999999998754 5888 688877654
No 125
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.75 E-value=1e-05 Score=75.95 Aligned_cols=49 Identities=29% Similarity=0.609 Sum_probs=42.7
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
...|+||.+.+.+|+.++|||.||..||..|+......|| .|+..+...
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCP--SCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCT--TTCCBCCGG
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCC--CCCCCCCHh
Confidence 4579999999999999999999999999999987677898 688776553
No 126
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.75 E-value=1.2e-05 Score=64.62 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=37.9
Q ss_pred cccccccCCCCCCC----cccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 682 SSAICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 682 ~~~~C~iC~d~~~~----~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
+...|.||++.+.. +++++|||+||..|+..|+... ..|| .||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP--~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCP--LCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCT--TSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCC--CCCCcC
Confidence 45789999998754 7888999999999999998765 7888 677654
No 127
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.71 E-value=1.4e-05 Score=67.31 Aligned_cols=47 Identities=30% Similarity=0.818 Sum_probs=39.3
Q ss_pred cccccccCCCCCCCc-ccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~-vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
....|+||.+.+..+ +.++|||.||..|+..|+... ..|| .||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP--~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCP--LCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTT--TTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCc--CCChhhH
Confidence 457899999999886 778999999999999998643 6788 6887765
No 128
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=6.9e-06 Score=69.22 Aligned_cols=47 Identities=36% Similarity=0.912 Sum_probs=38.8
Q ss_pred cccccccCCCCCCCc-------ccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDS-------VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~-------vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
....|.||++.+..+ +++.|||+||..||..|+.. ...|| .||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCP--TCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCT--TTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCC--CCCCccC
Confidence 467899999987766 88899999999999999875 56788 6877653
No 129
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.70 E-value=1.5e-05 Score=73.78 Aligned_cols=48 Identities=27% Similarity=0.688 Sum_probs=41.0
Q ss_pred cccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
....|+||.+.+.+|+.+ +|||.||..||..|+... ..|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP--~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCP--ICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCT--TTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCc--CCCccccc
Confidence 456799999999999997 999999999999998754 7888 68877654
No 130
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.69 E-value=3.7e-05 Score=72.27 Aligned_cols=45 Identities=29% Similarity=0.670 Sum_probs=39.0
Q ss_pred cccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
....|+||.+.+..|+.+ +|||.||..||..|+. ..|| .|+..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP--~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCP--VCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCS--SSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCc--CCCCcCc
Confidence 356799999999999999 9999999999999986 6788 6877653
No 131
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.68 E-value=2e-05 Score=88.36 Aligned_cols=51 Identities=22% Similarity=0.729 Sum_probs=44.0
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~ 734 (972)
....|+||.+.+..|+.++|||+||..|+..|+......|| .||..+....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP--~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCP--FCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCT--TTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCC--CCCCccCCce
Confidence 35789999999999999999999999999999876667888 6888776543
No 132
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.65 E-value=3.3e-05 Score=67.25 Aligned_cols=50 Identities=28% Similarity=0.676 Sum_probs=39.8
Q ss_pred cccccccCCCCCC--Cccccc--CCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPE--DSVVTM--CGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~--~~vit~--CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||++++. ++++.+ |||.||..|+..++......|| .||..+...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP--~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCP--ACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCT--TTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCC--CCCCccCCC
Confidence 4568999999874 345554 9999999999999876667888 799887654
No 133
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.61 E-value=3.3e-05 Score=62.01 Aligned_cols=46 Identities=28% Similarity=0.702 Sum_probs=36.6
Q ss_pred cccccccCCCCCCC---ccccc-CCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 682 SSAICCVCSDPPED---SVVTM-CGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 682 ~~~~C~iC~d~~~~---~vit~-CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
+...|.||++.+.. ++..+ |||+||..|+.+|+.. ...|| .||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP--~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCP--LCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCS--SSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCc--CCCCEe
Confidence 45689999998766 56665 9999999999999865 56788 677654
No 134
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.61 E-value=3e-05 Score=67.23 Aligned_cols=49 Identities=24% Similarity=0.587 Sum_probs=39.0
Q ss_pred cccccccCCCCCCCc---ccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDS---VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~---vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|.||++.+..+ ++++|||+||..||..|+... ..|| .||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP--~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCP--VCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCT--TTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCc--CcCCccCCc
Confidence 467899999887654 456899999999999998644 6788 688877654
No 135
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=1.7e-05 Score=67.22 Aligned_cols=47 Identities=30% Similarity=0.875 Sum_probs=39.8
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
....|.||++.+.. ++++|||.||..|+..|+. ....|| .||..+..
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP--~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCP--ICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCH--HHHHCTTC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCC--CcCCcccC
Confidence 45789999999888 8899999999999999987 456787 78877654
No 136
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.60 E-value=1.4e-05 Score=84.37 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=44.2
Q ss_pred cccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCC-CCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGD-DNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~-~~~cp~~~Cr~~l~~~ 733 (972)
....|+||.+.+.+||.. .|||+||..||..|+... ...||..+|+..+...
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 467899999999999985 999999999999999753 3589988899877553
No 137
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.59 E-value=1.3e-05 Score=78.05 Aligned_cols=47 Identities=19% Similarity=0.624 Sum_probs=41.2
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
....|+||.+.+..||.+.|||.||..||..|+......|| .||..+
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP--~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCA--ACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECH--HHHHTT
T ss_pred cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCC--CCCCcc
Confidence 45689999999999999999999999999999976666888 688765
No 138
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.56 E-value=2.8e-05 Score=72.63 Aligned_cols=48 Identities=25% Similarity=0.582 Sum_probs=38.1
Q ss_pred ccccccCCCCCCCcc------------------cccCCcchhhhhHhhhhc----CCCCCCCCccccccccc
Q 002077 683 SAICCVCSDPPEDSV------------------VTMCGHVFCYQCASEYIT----GDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~~v------------------it~CgH~fC~~Ci~~~~~----~~~~~cp~~~Cr~~l~~ 732 (972)
...|+||++.+..++ ++.|||+||..||..|+. .....|| .||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP--~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP--SCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCT--TTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCC--CCCCccCC
Confidence 468999999886654 678999999999999995 3356888 68876643
No 139
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.51 E-value=3.8e-05 Score=62.26 Aligned_cols=44 Identities=20% Similarity=0.502 Sum_probs=36.6
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
....|+||.+.+..|++++|||.||..|+.. ....|| .||..+.
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP--~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCP--ICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCS--SCCSSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCC--cCCcEee
Confidence 4567999999999999999999999999987 345787 6777654
No 140
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.49 E-value=4.6e-05 Score=64.30 Aligned_cols=48 Identities=25% Similarity=0.636 Sum_probs=38.1
Q ss_pred cccccccCCCCCC---CcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 682 SSAICCVCSDPPE---DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 682 ~~~~C~iC~d~~~---~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
....|.||++.+. .++.++|||+||..|+..|+... ..|| .||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCP--ICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCT--TTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCc--CcCccccC
Confidence 4678999988764 46778999999999999998754 4687 68877654
No 141
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.46 E-value=3.9e-05 Score=68.75 Aligned_cols=47 Identities=21% Similarity=0.540 Sum_probs=37.7
Q ss_pred cccccccCCCCCCC---cccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPED---SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~---~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
....|.||++.+.. ++.++|||+||..||..|+.. ...|| .||..+.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP--~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCP--VCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCT--TTCCBSS
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCc--CcCccCC
Confidence 45679999987765 677899999999999999864 45788 6877654
No 142
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=6.3e-05 Score=64.41 Aligned_cols=48 Identities=21% Similarity=0.539 Sum_probs=37.7
Q ss_pred cccccccCCCCCCCccc---ccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 682 SSAICCVCSDPPEDSVV---TMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vi---t~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
....|.||++.+..+.. ++|||+||..||..|+... ..|| .||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP--~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCP--LCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCT--TTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCC--CcCccccc
Confidence 35689999998876544 3899999999999998754 4788 68876643
No 143
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.41 E-value=3.8e-05 Score=66.05 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=38.3
Q ss_pred cccccccCCCCCCCc---ccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 682 SSAICCVCSDPPEDS---VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~---vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
....|.||++.+..+ +.++|||+||..||..|+... ..|| .||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCP--ICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCT--TTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCc--CcCCcCCC
Confidence 467899999887665 677899999999999998653 5788 68876543
No 144
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.36 E-value=3.5e-05 Score=77.33 Aligned_cols=51 Identities=31% Similarity=0.564 Sum_probs=43.8
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 734 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~ 734 (972)
....|+||.+.+..|+.+.|||+||..|+..|+......|| .|+..+..+.
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP--~Cr~~~~~~~ 67 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP--VDNEILLENQ 67 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCT--TTCCBCCGGG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCC--CCccCcchhh
Confidence 35689999999999999999999999999999976666898 6888776543
No 145
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.27 E-value=9.4e-05 Score=63.59 Aligned_cols=43 Identities=33% Similarity=0.759 Sum_probs=37.5
Q ss_pred ccccccCCCCCCCcccccCCcc-hhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
...|.+|++.+.+++.++|||. ||..|+..+ ..|| .||..+..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP--~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCP--MCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCT--TTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCC--CcCcCccC
Confidence 4579999999999999999999 999999987 6787 68877654
No 146
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.00016 Score=62.31 Aligned_cols=43 Identities=33% Similarity=0.759 Sum_probs=36.5
Q ss_pred ccccccCCCCCCCcccccCCcc-hhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
...|.||++.+.+++.++|||. ||..|+... ..|| .||..+..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCT--TTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCc--cCCceecC
Confidence 4579999999999999999999 999999753 5787 68887654
No 147
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.18 E-value=9.1e-05 Score=66.74 Aligned_cols=52 Identities=27% Similarity=0.619 Sum_probs=40.2
Q ss_pred cccccccCCCCCCCcccc---cCCcchhhhhHhhhhcC---C----CCCCCCcccccc--cccc
Q 002077 682 SSAICCVCSDPPEDSVVT---MCGHVFCYQCASEYITG---D----DNMCPAPRCKEQ--LGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit---~CgH~fC~~Ci~~~~~~---~----~~~cp~~~Cr~~--l~~~ 733 (972)
....|.||++....++.. .|||.||..|+..++.. + ...||.+.|+.. +..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 356799999988776553 69999999999999863 1 248998889987 5543
No 148
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.17 E-value=8.7e-05 Score=70.76 Aligned_cols=51 Identities=33% Similarity=0.819 Sum_probs=41.9
Q ss_pred cccccccCCCCCCCc-------ccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccc
Q 002077 682 SSAICCVCSDPPEDS-------VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~-------vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~ 735 (972)
+...|+||++.+..| +.+.|||+||..||.+|+... ..|| .|+..+....+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP--~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCP--TCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCT--TTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCC--CCCCcCccccc
Confidence 467899999998777 889999999999999998654 4787 68887765443
No 149
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.16 E-value=0.00012 Score=60.46 Aligned_cols=48 Identities=17% Similarity=0.377 Sum_probs=38.8
Q ss_pred ccccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 683 SAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
...|++|.+.+.+||++ .|||+||..||.+|+... ..|| .++..+...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP--~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDP--ITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCT--TTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCc--CCcCCCChh
Confidence 45799999999999999 999999999999999754 4588 455555443
No 150
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.10 E-value=0.0014 Score=68.83 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=30.4
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHH
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~ 318 (972)
..++++||..++..+...+. .++.-..|.|||.....++.
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~-------~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSV-------VIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSE-------EEEECCTTSSHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCE-------EEEEeCCCCCcHHhHHHHHh
Confidence 34689999999998874322 47888999999976655554
No 151
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.10 E-value=0.0002 Score=59.58 Aligned_cols=49 Identities=27% Similarity=0.715 Sum_probs=40.1
Q ss_pred ccccccccCCCCCCCcccc--cCCcc-hhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 681 TSSAICCVCSDPPEDSVVT--MCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~~vit--~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
.....|.+|++.+.++++. +|||. ||..|+..+... ...|| .||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP--iCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCP--ICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCT--TTCCBCCE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCC--CcCchhhc
Confidence 3567899999999888777 99998 999999998754 36788 68887643
No 152
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.0003 Score=61.53 Aligned_cols=48 Identities=29% Similarity=0.640 Sum_probs=36.8
Q ss_pred cccccccCCCCCCC--------------cccc-cCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 682 SSAICCVCSDPPED--------------SVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 682 ~~~~C~iC~d~~~~--------------~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
....|+||++.++. +++. .|||+|+..||.+|+... ..|| .||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP--~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCP--LCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCT--TTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCC--CcCCCcch
Confidence 45679999988755 3344 599999999999998764 5888 68877643
No 153
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.02 E-value=0.00027 Score=58.87 Aligned_cols=47 Identities=23% Similarity=0.786 Sum_probs=39.3
Q ss_pred cccccccCCCCCCCcccc--cCCcc-hhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDSVVT--MCGHV-FCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit--~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
....|.||++.+.++++. +|||+ ||..|+..+... ...|| .||..+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP--iCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCP--VCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCT--TTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCC--CcCcchh
Confidence 467899999999999877 99999 899999998753 45788 6888764
No 154
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00038 Score=58.77 Aligned_cols=45 Identities=27% Similarity=0.712 Sum_probs=38.3
Q ss_pred ccccccccCCCCCCCcccccCCcc-hhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 681 TSSAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~~vit~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
.....|.||++.+.+++.++|||. ||..|+... ..|| .||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF-----QQCP--MCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC-----SSCT--TTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC-----CCCC--CCCcchhc
Confidence 456789999999999999999999 999999953 5787 78887754
No 155
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.92 E-value=0.00039 Score=60.56 Aligned_cols=44 Identities=30% Similarity=0.798 Sum_probs=37.8
Q ss_pred ccccccCCCCCCCcccccCCcc-hhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
...|.+|++.+.+++..+|||. ||..|+..+. .|| .||..+...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP--~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCP--VCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCT--TTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCC--CCCchhhCe
Confidence 4589999999999999999999 9999999763 777 788887653
No 156
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.72 E-value=0.00086 Score=61.80 Aligned_cols=46 Identities=22% Similarity=0.620 Sum_probs=36.9
Q ss_pred cccccccCCCCCCCc------------------ccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 682 SSAICCVCSDPPEDS------------------VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~------------------vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
....|+||++.++.+ +.++|+|.|+..||..|+.. ...|| .||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP--~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCP--LDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCS--SSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCc--CCCCcc
Confidence 356899999887654 34689999999999999876 57888 688764
No 157
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.52 E-value=0.0011 Score=73.99 Aligned_cols=44 Identities=32% Similarity=0.791 Sum_probs=38.1
Q ss_pred cccccccCCCCCCCcccccCCcc-hhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~-fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
....|.||++.+..|+.++|||. ||..|+..+ ..|| .||..+..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP--~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCP--ICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCT--TTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCC--CCCCCccC
Confidence 35789999999999999999999 999999987 5787 68887654
No 158
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.50 E-value=0.00053 Score=65.19 Aligned_cols=52 Identities=33% Similarity=0.813 Sum_probs=41.9
Q ss_pred ccccccccCCCCCCCc-------ccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccc
Q 002077 681 TSSAICCVCSDPPEDS-------VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~~-------vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~ 735 (972)
.....|++|++.+..+ +.+.|||+||..|+..|+... ..|| .||..+..+.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP--~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCP--TCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCT--TTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCC--CCCCcCChhcc
Confidence 3567899999987665 888999999999999998653 5787 78888776543
No 159
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.03 E-value=0.017 Score=70.01 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=34.8
Q ss_pred cccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhh
Q 002077 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 270 ~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (972)
+....|-+.|++||..++.... . .|+.=..|.|||.+++.+|...
T Consensus 185 ~~~~~LN~~Q~~AV~~al~~~~--~----~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 185 FFNTCLDTSQKEAVLFALSQKE--L----AIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CSSTTCCHHHHHHHHHHHHCSS--E----EEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHhcCCC--c----eEEECCCCCCHHHHHHHHHHHH
Confidence 3455799999999999885322 1 4788889999999988888753
No 160
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.01 E-value=0.0026 Score=56.95 Aligned_cols=46 Identities=35% Similarity=0.786 Sum_probs=38.0
Q ss_pred ccccCCCCCCC-cccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 685 ICCVCSDPPED-SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 685 ~C~iC~d~~~~-~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
.|..|.-|... ..+.+|.|+||++|+..+....+..|| .|+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp--~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCP--GCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCT--TTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCc--CcCCeeee
Confidence 47888777655 456799999999999999888899999 68887654
No 161
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.83 E-value=0.0015 Score=61.08 Aligned_cols=45 Identities=22% Similarity=0.641 Sum_probs=0.5
Q ss_pred ccccccCCCCCCCc------------------ccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 683 SAICCVCSDPPEDS------------------VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 683 ~~~C~iC~d~~~~~------------------vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
...|.||++.++.+ +.++|+|.|+..||..|+.. ...|| .||...
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP--~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCP--LDNREW 110 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCC--CCCCee
Confidence 46899999887643 22589999999999999876 56788 687764
No 162
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.01 E-value=0.012 Score=51.29 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=39.5
Q ss_pred cccccccCCCCC--CCcccccCC-----cchhhhhHhhhhcCCC-CCCCCcccccccccc
Q 002077 682 SSAICCVCSDPP--EDSVVTMCG-----HVFCYQCASEYITGDD-NMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~--~~~vit~Cg-----H~fC~~Ci~~~~~~~~-~~cp~~~Cr~~l~~~ 733 (972)
....|.||++.. ..+++++|. |.|...||..|+.... ..|| .|+..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~Cp--lCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCE--LCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCS--SSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCC--CCCCeeecC
Confidence 457899999765 457889996 9999999999997643 6898 688776543
No 163
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.78 E-value=0.099 Score=62.99 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=30.1
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
.|-+.|+.|+..++.. .-.++--..|.|||.++..++..
T Consensus 180 ~ln~~Q~~av~~~l~~-------~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp CCCHHHHHHHHHHHTC-------SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC-------CCeEEECCCCCCHHHHHHHHHHH
Confidence 5889999999988731 11466778899999988887754
No 164
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.13 Score=63.69 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=34.9
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHH----HHHHHHhhhcCCCeeEEEEec
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPA----RDRAVKDFNTDREITVMLMSL 876 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~----R~~~I~~F~~~~~~~VlLiSl 876 (972)
..|-|.+.|......|...|...|+- .... +...++.|+ +.+..|+|+|+
T Consensus 676 ~~IgVItpy~~Q~~~I~~~L~~~~~l--------~~~~~~~v~V~TVd~fQ-G~E~dvVIlS~ 729 (802)
T 2xzl_A 676 EQIGVITPYEGQRAYILQYMQMNGSL--------DKDLYIKVEVASVDAFQ-GREKDYIILSC 729 (802)
T ss_dssp GGEEEEESCHHHHHHHHHHHHHHCSS--------CHHHHHTSEEEEHHHHT-TCCEEEEEEEC
T ss_pred ccEEEEcccHHHHHHHHHHHHHcccc--------ccccccceEEcchhhcC-CCccCEEEEEe
Confidence 37899999999999999999876530 1000 112377888 45788888885
No 165
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.68 E-value=0.18 Score=62.34 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=30.6
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
..|-+.|+.|+..++.. . -.++--..|.|||.++..++..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~---~----~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQR---P----LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp CCCCHHHHHHHHHHHTS---S----EEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhccC---C----eEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999988731 1 1367778899999988887764
No 166
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=87.17 E-value=0.5 Score=56.78 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=61.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEec-CccccccCCCC--CCEEEEec
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL-KAGNLGLNMVA--ASHVILLD 895 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSl-kagg~GLNLt~--A~~VI~~D 895 (972)
.+|||...-.+++.+...|+ .+... ..-.++..+|.+++++|. + +-.||+... ....+|+|+.. +..||+.-
T Consensus 450 ~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~-~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 450 NTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-R-DHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp CEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-T-SCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-c-CCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 68888777778888877776 23333 444455678999999999 3 445666542 47899999986 67888887
Q ss_pred CCCCCC-----------------------------hHHHHhHhhcccCCcccEEE
Q 002077 896 LWWNPT-----------------------------TEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 896 p~WNp~-----------------------------~e~QAigRi~RiGQ~k~V~V 921 (972)
+|+-+. ...|++||+-|--..+-|.|
T Consensus 525 lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 525 LPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 776321 13599999988766665444
No 167
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.73 E-value=1.2 Score=54.06 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=51.8
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCC
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (972)
..+.++|..++.-+...-.... +.-+|.--.|.|||+++..++...
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~--~~~~l~g~tgs~kt~~~a~~~~~~-------------------------------- 52 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGE--RFVTLLGATGTGKTVTMAKVIEAL-------------------------------- 52 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHH--------------------------------
T ss_pred CCCCCCChHHHHHHHHHHhcCC--CcEEEEcCCCcHHHHHHHHHHHHh--------------------------------
Confidence 4688999999875553322110 112566779999999988777521
Q ss_pred cccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCC
Q 002077 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPD 409 (972)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~ 409 (972)
.+++|||+|. .+..||.+|+..|++.
T Consensus 53 -------------------------------~~~~lvv~~~~~~A~ql~~el~~~~~~ 79 (664)
T 1c4o_A 53 -------------------------------GRPALVLAPNKILAAQLAAEFRELFPE 79 (664)
T ss_dssp -------------------------------TCCEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred -------------------------------CCCEEEEecCHHHHHHHHHHHHHHCCC
Confidence 1359999996 5789999999999874
No 168
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=85.62 E-value=2.2 Score=51.13 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=28.0
Q ss_pred cCchhHHHHHHHHHH-hhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 274 NLLKHQKIALAWMLQ-KETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 274 ~LrpyQk~al~wml~-~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
.+||+|++.+.-+.+ ... .+-.|+.-.+|.|||+..|.-++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~----~~~~~~~apTGtGKT~a~l~p~l~ 45 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQK----SYGVALESPTGSGKTIMALKSALQ 45 (620)
T ss_dssp --CHHHHHHHHHHHHHHHH----SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc----CCCEEEECCCCCCHHHHHHHHHHH
Confidence 579999997653322 222 233688999999999988776654
No 169
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=85.44 E-value=0.22 Score=54.51 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=36.8
Q ss_pred cccccccCCCCCCC----cc----cccCCcchhhhhHhhhhcCC----------CCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPED----SV----VTMCGHVFCYQCASEYITGD----------DNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~----~v----it~CgH~fC~~Ci~~~~~~~----------~~~cp~~~Cr~~l~~~ 733 (972)
...+|+||...... |. -..|||.|-..|+.+|+... .+.|| .|+.++...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCcc
Confidence 56789999876543 31 24799999999999998632 14688 899887653
No 170
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=82.32 E-value=2.5 Score=51.03 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=51.3
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCC
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (972)
+.+..+|..++.-+...-.... +.-+|.--.|.|||+++..++...
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~--~~~~l~g~~gs~k~~~~a~~~~~~-------------------------------- 56 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGK--KHQTLLGATGTGKTFTVSNLIKEV-------------------------------- 56 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHH--------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHhcCC--CcEEEECcCCcHHHHHHHHHHHHh--------------------------------
Confidence 4688899999876553322110 112566678999999987777521
Q ss_pred cccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCC
Q 002077 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPD 409 (972)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~ 409 (972)
.+++|||+|. .+..||..|+..|+++
T Consensus 57 -------------------------------~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 57 -------------------------------NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp -------------------------------CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred -------------------------------CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 1359999996 4789999999999874
No 171
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=82.25 E-value=3 Score=46.92 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=30.3
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
..+.|.|||+..+..|... +-.++.=.-+.|||..+.++++.
T Consensus 160 ~p~~L~p~Qk~il~~l~~~-------R~~vi~~sRq~GKT~l~a~~~l~ 201 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSK-------RMTVCNLSRQLGKTTVVAIFLAH 201 (385)
T ss_dssp EECCCCHHHHHHHHHHHHS-------SEEEEEECSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhccC-------cEEEEEEcCcCChhHHHHHHHHH
Confidence 4568999999988766421 11466677799999987777654
No 172
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.92 E-value=1.5 Score=37.19 Aligned_cols=49 Identities=20% Similarity=0.614 Sum_probs=36.9
Q ss_pred ccccccccCCCCCCCcc-cccCCcchhhhhHhhhhcCC-CCCCCCcccccccc
Q 002077 681 TSSAICCVCSDPPEDSV-VTMCGHVFCYQCASEYITGD-DNMCPAPRCKEQLG 731 (972)
Q Consensus 681 ~~~~~C~iC~d~~~~~v-it~CgH~fC~~Ci~~~~~~~-~~~cp~~~Cr~~l~ 731 (972)
....+|.||.+....-. -..|+|.|=..||..|+... ...|| .|+....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCP--HCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCT--TTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCC--CCcCcCC
Confidence 35678999998876422 23799999999999999754 36888 6776654
No 173
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=77.55 E-value=3.1 Score=42.82 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=16.6
Q ss_pred eeecCCCChhHHHHHHHHHh
Q 002077 300 ILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~~ 319 (972)
++.-+||-|||..+|.++..
T Consensus 32 vitG~MgsGKTT~lL~~a~r 51 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRR 51 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 36889999999988888764
No 174
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=76.95 E-value=3.5 Score=47.37 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=30.8
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (972)
.|-+.|+.++..++..-.... .-.+|--.-|.|||..+.+++...
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~--~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKK--HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSS--CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCC--CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 488999999987764321110 124666778999998887777653
No 175
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=76.01 E-value=3.4 Score=42.81 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.7
Q ss_pred eeecCCCChhHHHHHHHHHh
Q 002077 300 ILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~~ 319 (972)
++.-+||.|||..++.++..
T Consensus 16 litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 66789999999888888764
No 176
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=71.85 E-value=11 Score=44.68 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=29.1
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
....|.|||+..+..|.. . +=.++.=.=|.|||..+.++++.
T Consensus 160 ~~~~l~p~Q~~i~~~l~~---~----r~~~i~~~Rq~GKS~~~a~~~l~ 201 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSS---K----RMTVCNLSRQLGKTTVVAIFLAH 201 (592)
T ss_dssp BBCCCCHHHHHHHHHHHH---C----SEEEEEECSSSCHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHhhcc---c----cEEEEEEcCccChHHHHHHHHHH
Confidence 456799999998776621 1 11466667899999887666654
No 177
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=71.44 E-value=1.8 Score=38.74 Aligned_cols=30 Identities=23% Similarity=0.743 Sum_probs=25.8
Q ss_pred ccccccCCCC-CCCccc--ccCCcchhhhhHhh
Q 002077 683 SAICCVCSDP-PEDSVV--TMCGHVFCYQCASE 712 (972)
Q Consensus 683 ~~~C~iC~d~-~~~~vi--t~CgH~fC~~Ci~~ 712 (972)
...|.+|.+. ...|+. ..|+|.||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4679999964 677888 79999999999998
No 178
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=70.25 E-value=7 Score=38.89 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=16.2
Q ss_pred eeecCCCChhHHHHHHHHHh
Q 002077 300 ILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~~ 319 (972)
++.=.||.|||..++.++..
T Consensus 7 vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 67778999999888777753
No 179
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=68.60 E-value=2.7 Score=34.02 Aligned_cols=47 Identities=19% Similarity=0.528 Sum_probs=34.9
Q ss_pred cccccccCCCCCCCcccccCCc-----chhhhhHhhhhcC-CCCCCCCccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGH-----VFCYQCASEYITG-DDNMCPAPRCKEQL 730 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH-----~fC~~Ci~~~~~~-~~~~cp~~~Cr~~l 730 (972)
+...|.||++....+++.+|.+ .|=..|+..|+.. ....|| .|+..+
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~--~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQ--ICGVVY 57 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCT--TTCCBC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccC--CCCCee
Confidence 4578999998777778888653 5667899999974 356888 566554
No 180
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=68.11 E-value=34 Score=39.99 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=55.1
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.+||||.+.+.-....-. ..+-+++--.+|.|||+..+.-++. .
T Consensus 3 ~~r~~Q~~~~~~v~~~l~---~~~~~~~~a~TGtGKT~~~l~p~l~---~------------------------------ 46 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLR---NNFLVALNAPTGSGKTLFSLLVSLE---V------------------------------ 46 (551)
T ss_dssp SCCHHHHHHHHHHHHHHH---TTCEEEEECCTTSSHHHHHHHHHHH---H------------------------------
T ss_pred CCCHHHHHHHHHHHHHHH---cCCcEEEECCCCccHHHHHHHHHHh---C------------------------------
Confidence 689999997653332111 1233677889999999988766653 0
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeC
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHG 420 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G 420 (972)
..++||++|+. |..||.+|+.+.... ..+++.+..|
T Consensus 47 ------------------------------~~~v~i~~pt~~l~~q~~~~~~~l~~~-~~~~~~~l~g 83 (551)
T 3crv_A 47 ------------------------------KPKVLFVVRTHNEFYPIYRDLTKIREK-RNITFSFLVG 83 (551)
T ss_dssp ------------------------------CSEEEEEESSGGGHHHHHHHHTTCCCS-SCCCEEECCC
T ss_pred ------------------------------CCeEEEEcCCHHHHHHHHHHHHHHhhh-cCccEEEEcc
Confidence 13489999964 889999999886432 2577777766
No 181
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=60.35 E-value=5.9 Score=33.69 Aligned_cols=41 Identities=32% Similarity=0.884 Sum_probs=30.6
Q ss_pred ccccccCCCCCCCcccccC----CcchhhhhHhhhhcC----CCCCCCC
Q 002077 683 SAICCVCSDPPEDSVVTMC----GHVFCYQCASEYITG----DDNMCPA 723 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~C----gH~fC~~Ci~~~~~~----~~~~cp~ 723 (972)
.-.|.+|.+.+++.-.-.| +|-||..|-..+|.. .+-.||.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 4569999999988644444 899999999999863 3446663
No 182
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=59.14 E-value=26 Score=36.46 Aligned_cols=62 Identities=16% Similarity=0.519 Sum_probs=41.9
Q ss_pred hHHHHHHHHhhc----ccccccccCCCCCCCccc-ccCCcchhhhhHhhhhcCC-CCCCCCccccccccc
Q 002077 669 RDMLIDLLSRLE----TSSAICCVCSDPPEDSVV-TMCGHVFCYQCASEYITGD-DNMCPAPRCKEQLGA 732 (972)
Q Consensus 669 ~e~~~~ll~~le----~~~~~C~iC~d~~~~~vi-t~CgH~fC~~Ci~~~~~~~-~~~cp~~~Cr~~l~~ 732 (972)
...+.++...|. +....|.+|.+.....+. ..|+|.|=..|+..|+... ...|| .|+.....
T Consensus 162 ~R~l~El~~~l~~~~~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP--~C~~~W~~ 229 (238)
T 3nw0_A 162 GRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCP--HCNDYWPH 229 (238)
T ss_dssp HHHHHHHHHHHHHHCTTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCT--TTCCBCCS
T ss_pred CccHHHHHHHHHHhcCCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCC--CCCCCCCC
Confidence 334444444443 357899999988764322 2399999999999998654 56899 68776543
No 183
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=58.73 E-value=28 Score=42.73 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=54.7
Q ss_pred eEEEEecchHHHHHHHHHHH----hCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLN----QHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL 893 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~----~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~ 893 (972)
++||.+.....+.-+...+. ..|+++..++|+++..+|.+.++....+ .+.|++.+.......+++.....||+
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhhhhhccCCceEEe
Confidence 89999998776655555544 4489999999999999999999988865 67777777655544556665555543
No 184
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=53.95 E-value=37 Score=30.38 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=40.6
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecC
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 877 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlk 877 (972)
+|+||+. +=.+...+...|.+.|++|..++=......++.+. ++.....+.++++.-+
T Consensus 19 ~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~-~~~g~~tvP~ifi~g~ 82 (109)
T 3ipz_A 19 KVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLK-EYSNWPTFPQLYIGGE 82 (109)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHH-HHHTCSSSCEEEETTE
T ss_pred CEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHH-HHHCCCCCCeEEECCE
Confidence 8999998 56788899999999999999888665555555444 4433345555555533
No 185
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=52.29 E-value=9.8 Score=38.47 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=14.0
Q ss_pred eeecCCCChhHHHHHHHHH
Q 002077 300 ILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~ 318 (972)
++.-.||+|||-..|-.+.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~ 42 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVR 42 (195)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 6678999999965555543
No 186
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=52.20 E-value=18 Score=37.14 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=14.9
Q ss_pred eeecCCCChhHHHHHHHHH
Q 002077 300 ILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 300 ILADdmGLGKTiqaIali~ 318 (972)
++.-.||-|||-.+|-.+.
T Consensus 32 vitG~M~sGKTT~Llr~~~ 50 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLR 50 (219)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 5677899999977776654
No 187
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=51.77 E-value=52 Score=29.46 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=44.0
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD 866 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~ 866 (972)
-.+|||.-+..|.-|-..++..|+.++.+......+.|.+.++.|...
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 457999999999999999999999999999999999999999999864
No 188
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=49.74 E-value=15 Score=41.97 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=15.5
Q ss_pred ceEEEcCch-hHHHHHHHHHh
Q 002077 386 GTLVVCPAS-VLRQWARELED 405 (972)
Q Consensus 386 ~tLIV~P~s-Ll~QW~~Ei~k 405 (972)
+.|||+|.. +...|.+.+.+
T Consensus 186 ~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 186 EDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp TCEEEESCHHHHHHHHHHHTT
T ss_pred CeEEEeCCHHHHHHHHHHhhh
Confidence 479999975 77888888754
No 189
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=49.01 E-value=53 Score=30.07 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=40.6
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCc---EEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQ---YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~---~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
+|+||+. +=.+...+...|.+.|+. |..++=......|+.+ ..+...+.+.++.+.-+.
T Consensus 17 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l-~~~sg~~tvP~vfI~g~~ 84 (121)
T 3gx8_A 17 PVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGI-KEFSEWPTIPQLYVNKEF 84 (121)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHH-HHHHTCCSSCEEEETTEE
T ss_pred CEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHH-HHHhCCCCCCeEEECCEE
Confidence 8999998 556788889999999998 8888876665555544 444333455555555333
No 190
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=48.40 E-value=23 Score=32.87 Aligned_cols=45 Identities=13% Similarity=0.007 Sum_probs=36.9
Q ss_pred EEEEecchHHH-------HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhh
Q 002077 820 SIVFSQWTRML-------DLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 864 (972)
Q Consensus 820 vIVFSqft~~l-------d~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~ 864 (972)
|.||+.-..-. ..+...|+..||.|..++=++....|+.+++...
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 45676644332 5788889999999999999999999999999983
No 191
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=46.69 E-value=51 Score=29.67 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=40.4
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecC
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 877 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlk 877 (972)
+|+||+. +=.+...+...|.+.|+.|..++=......|+.+ .++...+.+.++.+.-+
T Consensus 17 ~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l-~~~~g~~tvP~ifi~g~ 80 (111)
T 3zyw_A 17 PCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGL-KAYSSWPTYPQLYVSGE 80 (111)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHH-HHHHTCCSSCEEEETTE
T ss_pred CEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHH-HHHHCCCCCCEEEECCE
Confidence 8999995 5567888899999999999988876665555544 44433345555555533
No 192
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=45.87 E-value=59 Score=35.97 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=56.9
Q ss_pred eEEEEecchHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccc---cCCCCCCEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ---HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLG---LNMVAASHVI 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~---~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~G---LNLt~A~~VI 892 (972)
++||.+.....+.-+...++. .++++..++|.++..+|...++.+..+ .+.|++++....-.- +++...+.||
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~iV 144 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFSTQFVSKNREKLSQKRFDFVF 144 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEEEEHHHHHHCHHHHTTCCCSEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEEECHHHHHHHHHHhccccccEEE
Confidence 999999999998888888887 689999999999998888888888765 577888876544211 3444555554
Q ss_pred E
Q 002077 893 L 893 (972)
Q Consensus 893 ~ 893 (972)
+
T Consensus 145 i 145 (414)
T 3oiy_A 145 V 145 (414)
T ss_dssp E
T ss_pred E
Confidence 3
No 193
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=40.98 E-value=50 Score=33.07 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=66.6
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.|++++..|..+.++++..+.+.+..+..+.|.+ ++-....++. . .++.|++ | .||.+-=|...-.+=.++..
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l--~~~v~~a~~~-~-~~~dVII-S--RGgta~~lr~~~~iPVV~I~ 77 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASL--TRASKIAFGL-Q-DEVDAII-S--RGATSDYIKKSVSIPSISIK 77 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCH--HHHHHHHHHH-T-TTCSEEE-E--EHHHHHHHHTTCSSCEEEEC
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCH--HHHHHHHHHh-c-CCCeEEE-E--CChHHHHHHHhCCCCEEEEc
Confidence 3999999999999999999988777877888886 4444555555 3 4667666 3 45555555544335556677
Q ss_pred CCCChHHHHhHhhcccCCc
Q 002077 898 WNPTTEDQAVDRAHRIGQT 916 (972)
Q Consensus 898 WNp~~e~QAigRi~RiGQ~ 916 (972)
.+.....|++-++-+++.+
T Consensus 78 ~s~~Dil~al~~a~~~~~k 96 (196)
T 2q5c_A 78 VTRFDTMRAVYNAKRFGNE 96 (196)
T ss_dssp CCHHHHHHHHHHHGGGCSE
T ss_pred CCHhHHHHHHHHHHhhCCc
Confidence 7888888999999888763
No 194
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=40.39 E-value=63 Score=30.32 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=40.8
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
+|+||+. +=.....+...|...|++|..++=......|+.+.+... .+.+.++++.
T Consensus 36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G-~~tvP~VfI~ 97 (135)
T 2wci_A 36 PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVD 97 (135)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEET
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHC-CCCcCEEEEC
Confidence 8999987 556788899999999999999988776666655544443 3455555544
No 195
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=39.01 E-value=75 Score=27.63 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=41.2
Q ss_pred eEEEEecch-HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEE
Q 002077 819 KSIVFSQWT-RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 874 (972)
Q Consensus 819 KvIVFSqft-~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLi 874 (972)
+|.||+.-. .....+...|++.||+|..++=....+.|+.+.+.-.-...+.++++
T Consensus 5 ~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i 61 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF 61 (92)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE
T ss_pred cEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE
Confidence 899998754 46788889999999999999988887777766554322234555554
No 196
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=38.60 E-value=80 Score=28.79 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=41.9
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQ-YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~-~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
+|+||+. +=.....+...|.+.|++ |..++=....+.|+. +.++.....+.++++.-+.
T Consensus 21 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~-l~~~tg~~tvP~vfI~g~~ 86 (118)
T 2wem_A 21 KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQG-IKDYSNWPTIPQVYLNGEF 86 (118)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHH-HHHHHTCCSSCEEEETTEE
T ss_pred CEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHH-HHHHhCCCCcCeEEECCEE
Confidence 8999998 567888999999999995 988887766665554 4444434455555555443
No 197
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=38.18 E-value=75 Score=27.81 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=40.4
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
+|+||+. |=.....+...|.+.++.|..++-......+..+.+.+.. ..+.++++.
T Consensus 18 ~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~v~i~ 79 (105)
T 2yan_A 18 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW-PTYPQLYVK 79 (105)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEEET
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC-CCCCeEEEC
Confidence 7999985 5567888888999999999999887766666666555543 355455543
No 198
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=36.77 E-value=91 Score=28.62 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=36.7
Q ss_pred eEEEEecc------hHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHhhhcCCC-eeEEE
Q 002077 819 KSIVFSQW------TRMLDLVENSLNQHCI-QYRRLDGTMSLPARDRAVKDFNTDRE-ITVML 873 (972)
Q Consensus 819 KvIVFSqf------t~~ld~L~~~L~~~gi-~~~~ldGs~s~~~R~~~I~~F~~~~~-~~VlL 873 (972)
+|+||+-- =.+...+...|...|+ +|..++=....+-|+ .+.++...+. +.||+
T Consensus 21 ~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~-~l~~~sg~~TvPqIFI 82 (118)
T 2wul_A 21 KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQ-GIKDYSNWPTIPQVYL 82 (118)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHH-HHHHHHTCCSSCEEEE
T ss_pred CEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHH-HHHHhccCCCCCeEeE
Confidence 89999763 3567777788899998 588887766655554 5555655444 44554
No 199
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=35.10 E-value=1.1e+02 Score=26.18 Aligned_cols=59 Identities=14% Similarity=0.298 Sum_probs=36.8
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCcc-ccccC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG-NLGLN 884 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkag-g~GLN 884 (972)
++||...-....+.+...|...|+.+..... . .++++.+... .+.++|+..... ..|+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~---~---~~a~~~~~~~-~~dlvl~D~~l~~~~g~~ 62 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAEN---G---EEALKKFFSG-NYDLVILDIEMPGISGLE 62 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESS---H---HHHHHHHHHS-CCSEEEECSCCSSSCHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCC---H---HHHHHHHhcC-CCCEEEEECCCCCCCHHH
Confidence 7888888888889999999888876543221 1 2344444433 456777665542 23543
No 200
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=34.61 E-value=54 Score=28.00 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=34.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
++||+..-......+...|...|+.+.... +.. ++++.+... .+.++|+....
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~---~~~---~~~~~l~~~-~~dlii~d~~~ 55 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLV---DGS---TALDQLDLL-QPIVILMAWPP 55 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEES---CHH---HHHHHHHHH-CCSEEEEECST
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEec---CHH---HHHHHHHhc-CCCEEEEecCC
Confidence 889999999999999999998888655432 222 233333332 45566666554
No 201
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=34.56 E-value=52 Score=38.75 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=31.4
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
...|-+.|+.++..++.. .-.++-=..|.|||.++.+++..
T Consensus 187 ~~~L~~~Q~~Av~~~~~~-------~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGH-------RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp TTTCCHHHHHHHHHHTTC-------SEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhC-------CEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999988732 11467778999999888777754
No 202
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=34.36 E-value=43 Score=29.64 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=46.6
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc-cccccCCC---------C
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA-GNLGLNMV---------A 887 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka-gg~GLNLt---------~ 887 (972)
.+|||...-......+...|...|+.+.... +. .++++.+... .+.++|+.... +..|+.+- .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~---~~a~~~l~~~-~~dlii~D~~l~~~~g~~~~~~l~~~~~~~ 76 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVM---SG---TDALHAMSTR-GYDAVFIDLNLPDTSGLALVKQLRALPMEK 76 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEES---SH---HHHHHHHHHS-CCSEEEEESBCSSSBHHHHHHHHHHSCCSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEEC---CH---HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHhhhccC
Confidence 3899999999999999999999887554432 12 2344444433 46677776554 33455432 1
Q ss_pred CCEEEEecCCCCCCh
Q 002077 888 ASHVILLDLWWNPTT 902 (972)
Q Consensus 888 A~~VI~~Dp~WNp~~ 902 (972)
.-.||++...-++..
T Consensus 77 ~~~ii~~s~~~~~~~ 91 (127)
T 3i42_A 77 TSKFVAVSGFAKNDL 91 (127)
T ss_dssp CCEEEEEECC-CTTC
T ss_pred CCCEEEEECCcchhH
Confidence 234666655544443
No 203
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=33.50 E-value=2e+02 Score=25.44 Aligned_cols=80 Identities=10% Similarity=0.093 Sum_probs=51.1
Q ss_pred CceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCcc-ccccCCC---------
Q 002077 817 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG-NLGLNMV--------- 886 (972)
Q Consensus 817 ~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkag-g~GLNLt--------- 886 (972)
..+|||...-....+.|...|...|+.+..... . .++++..... .+.++|+..... ..|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~---~---~~a~~~l~~~-~~dlii~d~~l~~~~g~~~~~~l~~~~~~ 79 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADS---G---GQCIDLLKKG-FSGVVLLDIMMPGMDGWDTIRAILDNSLE 79 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS---H---HHHHHHHHTC-CCEEEEEESCCSSSCHHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCC---H---HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 349999999999999999999999886543322 2 2455555544 577888876653 3454331
Q ss_pred CCCEEEEecCCCCCChH
Q 002077 887 AASHVILLDLWWNPTTE 903 (972)
Q Consensus 887 ~A~~VI~~Dp~WNp~~e 903 (972)
..-.||++....++...
T Consensus 80 ~~~pii~~s~~~~~~~~ 96 (142)
T 3cg4_A 80 QGIAIVMLTAKNAPDAK 96 (142)
T ss_dssp TTEEEEEEECTTCCCCS
T ss_pred CCCCEEEEECCCCHHHH
Confidence 12346666665554433
No 204
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=31.74 E-value=1.5e+02 Score=25.96 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=21.7
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcE
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQY 844 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~ 844 (972)
.++||...-....+.+...|...+..+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~~v 30 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFGNV 30 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCSCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhccee
Confidence 389999999999999999988775443
No 205
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=29.55 E-value=1.1e+02 Score=27.02 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=40.1
Q ss_pred eEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 819 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 819 KvIVFSq------ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
+|+||+. +=.....+...|...|+.|..++=......+..+.+.... ..+.++++.
T Consensus 16 ~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~ifi~ 77 (109)
T 1wik_A 16 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW-PTYPQLYVR 77 (109)
T ss_dssp SEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSC-CSSCEEECS
T ss_pred CEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCC-CCCCEEEEC
Confidence 8999988 3346778888899999999999988776666665554443 355555544
No 206
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=29.28 E-value=21 Score=44.28 Aligned_cols=41 Identities=10% Similarity=-0.020 Sum_probs=35.7
Q ss_pred cccccccCCCCCCCcccccCC-cchhhhhHhhhhcCCCCCCCC
Q 002077 682 SSAICCVCSDPPEDSVVTMCG-HVFCYQCASEYITGDDNMCPA 723 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~Cg-H~fC~~Ci~~~~~~~~~~cp~ 723 (972)
....|+|..+.+.+||+++.| +.|-..+|..|+.. ...||.
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~ 931 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPF 931 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTT
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCC
Confidence 356799999999999999998 58999999999976 568884
No 207
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=28.44 E-value=2e+02 Score=25.18 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=17.6
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHhhhc---CCCeeEEEEec
Q 002077 840 HCIQYRRLDGTMSLPARDRAVKDFNT---DREITVMLMSL 876 (972)
Q Consensus 840 ~gi~~~~ldGs~s~~~R~~~I~~F~~---~~~~~VlLiSl 876 (972)
..+..+.++-.++...-.+.++..+. .+.+.|+++|.
T Consensus 46 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 46 HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
Confidence 44555566555544333344444443 22455555553
No 208
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=28.25 E-value=1.1e+02 Score=38.90 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=57.5
Q ss_pred eEEEEecchHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccc---cCCCCCCEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ---HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLG---LNMVAASHVI 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~---~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~G---LNLt~A~~VI 892 (972)
++||.+.....+.-+...|.. .++.+..++|.++..+|.+.++.+..+ .+.|++.+....-.- +++.....||
T Consensus 123 ~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-~~~IlV~Tp~rL~~~l~~l~~~~l~~lV 201 (1104)
T 4ddu_A 123 KSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFSTQFVSKNREKLSQKRFDFVF 201 (1104)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-CCSEEEEEHHHHHHSHHHHHTSCCSEEE
T ss_pred eEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-CCCEEEECHHHHHHHHHhhcccCcCEEE
Confidence 999999999999988888888 588999999999998888888888865 578888876444111 3445555555
Q ss_pred E
Q 002077 893 L 893 (972)
Q Consensus 893 ~ 893 (972)
+
T Consensus 202 i 202 (1104)
T 4ddu_A 202 V 202 (1104)
T ss_dssp E
T ss_pred E
Confidence 4
No 209
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=28.10 E-value=73 Score=27.21 Aligned_cols=57 Identities=18% Similarity=0.080 Sum_probs=40.3
Q ss_pred eEEEEecch-HHH------HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhc-CCCeeEEEEe
Q 002077 819 KSIVFSQWT-RML------DLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMS 875 (972)
Q Consensus 819 KvIVFSqft-~~l------d~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~-~~~~~VlLiS 875 (972)
+|+||+.-. ... ..+...|...||+|..++=......|+.+.+.... ...+.++++.
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~ 67 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEET
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEEC
Confidence 788887643 345 67888899999999999988887777777666642 1244555544
No 210
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=27.99 E-value=1.4e+02 Score=38.27 Aligned_cols=73 Identities=8% Similarity=0.086 Sum_probs=54.4
Q ss_pred eEEEEecchHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~----~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI 892 (972)
+++|.+..+..+.-....+.+ .++.+..++|..+..++...++....+ .+.|++.+.......+++.....||
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g-~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG-KIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT-CCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhCCccccccceEE
Confidence 999999988877766666653 378899999999999998888888864 6778888766665556655444333
No 211
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=27.38 E-value=72 Score=36.72 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=41.2
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEe
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 894 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~ 894 (972)
+|||.+....-.+.|...|.++||.....+.. . .+. .+.+.|++ .....|.-+..+.-+++-
T Consensus 384 rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~---~-------~~~-~g~v~i~~---g~L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 384 PVVFSVESEGRREALGELLARIKIAPQRIMRL---D-------EAS-DRGRYLMI---GAAEHGFVDTVRNLALIC 445 (483)
T ss_dssp CEEEEESCSSTTTTTHHHHGGGTCCCEECSCG---G-------GCC-TTCEEEEE---SCCCSCEEETTTTEEEEE
T ss_pred eEEEEeCChHHHHHHHHHHHHcCCCceecCch---h-------hcC-CCcEEEEE---cccccCcccCCCCEEEEE
Confidence 89999998888899999999999976544321 1 122 22444444 345667777777666654
No 212
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=27.03 E-value=64 Score=22.00 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 002077 929 TVEDRILKLQDDKRKMVASA 948 (972)
Q Consensus 929 TIEe~Il~lq~~K~~li~~a 948 (972)
|-+|+...+|++|..||..|
T Consensus 2 s~~eRq~~Lq~Rk~~mi~~A 21 (28)
T 3h8k_B 2 SADERQRMLVQRKDELLQQA 21 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999765
No 213
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=26.58 E-value=65 Score=34.83 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=33.1
Q ss_pred CchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhh
Q 002077 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 275 LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (972)
++|+|...+..+...-.......+-+|.-+.|.|||..+.+++...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 6899999887666543322223446888999999999988887643
No 214
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=26.24 E-value=47 Score=33.37 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=46.5
Q ss_pred CceEEEEecchH-----------HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCC
Q 002077 817 PIKSIVFSQWTR-----------MLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNM 885 (972)
Q Consensus 817 ~~KvIVFSqft~-----------~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNL 885 (972)
..||||+.-.+. +++.+.+.|++.|..+..++=.... +...+-=.|
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~-----------------------d~~~~~~~l 68 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDY-----------------------DVKAEVQNF 68 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCC-----------------------CHHHHHHHH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccc-----------------------cHHHHHHHH
Confidence 458888766554 4566666677667666666533210 000011135
Q ss_pred CCCCEEEEecCCCC---CChHHHHhHhhcccC
Q 002077 886 VAASHVILLDLWWN---PTTEDQAVDRAHRIG 914 (972)
Q Consensus 886 t~A~~VI~~Dp~WN---p~~e~QAigRi~RiG 914 (972)
..|+.||+.-|-|| |+..-..|||+.+.|
T Consensus 69 ~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~~g 100 (204)
T 2amj_A 69 LWADVVIWQMPGWWMGAPWTVKKYIDDVFTEG 100 (204)
T ss_dssp HHCSEEEEEEECBTTBCCHHHHHHHHHHHHHT
T ss_pred HhCCEEEEECCccccCCCHHHHHHHHHHhhcC
Confidence 56899999999998 667888899975543
No 215
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=25.76 E-value=2.5e+02 Score=24.79 Aligned_cols=59 Identities=7% Similarity=0.131 Sum_probs=39.7
Q ss_pred eEEEEecch-HHHHHHHHHHHhCCCcEEEEeCCC--CHHHHHHHHHhhhcCCCeeEEEEecC
Q 002077 819 KSIVFSQWT-RMLDLVENSLNQHCIQYRRLDGTM--SLPARDRAVKDFNTDREITVMLMSLK 877 (972)
Q Consensus 819 KvIVFSqft-~~ld~L~~~L~~~gi~~~~ldGs~--s~~~R~~~I~~F~~~~~~~VlLiSlk 877 (972)
+++||+.-. .....+...|.+.|++|..++=.. ...+..+.+.+....+.+.++.+.-+
T Consensus 18 ~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g~ 79 (114)
T 3h8q_A 18 RVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKV 79 (114)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred CEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECCE
Confidence 899998743 467888889999999998887665 23344455555544456655555533
No 216
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.30 E-value=1.5e+02 Score=26.46 Aligned_cols=61 Identities=10% Similarity=0.159 Sum_probs=42.1
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc-cccccCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA-GNLGLNM 885 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka-gg~GLNL 885 (972)
.+|||...-......+...|...|+.+..... . .++++.+... .+.++|+.... +..|+.+
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~---~---~~a~~~l~~~-~~dlvi~d~~l~~~~g~~~ 68 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHS---A---AQALEQVARR-PYAAMTVDLNLPDQDGVSL 68 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEECS---H---HHHHHHHHHS-CCSEEEECSCCSSSCHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEEECC---H---HHHHHHHHhC-CCCEEEEeCCCCCCCHHHH
Confidence 49999999999999999999999987544322 2 2455555544 56778877654 3345543
No 217
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=24.06 E-value=94 Score=27.99 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=53.7
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc--cccccCCCC------CC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA--GNLGLNMVA------AS 889 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka--gg~GLNLt~------A~ 889 (972)
.+|||...-......|...|...|+.+..... -.++++.+.....+.++|+.... +..|+.+-. .-
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~------~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~ 79 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVEIALT------GEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISEL 79 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS------HHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEEEecC------hHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCC
Confidence 48999999999999999999999987654322 12455666553467788888765 356665532 23
Q ss_pred EEEEecCCCCCCh
Q 002077 890 HVILLDLWWNPTT 902 (972)
Q Consensus 890 ~VI~~Dp~WNp~~ 902 (972)
.||++....++..
T Consensus 80 ~ii~ls~~~~~~~ 92 (140)
T 3h5i_A 80 PVVFLTAHTEPAV 92 (140)
T ss_dssp CEEEEESSSSCCC
T ss_pred CEEEEECCCCHHH
Confidence 4666666655544
No 218
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.90 E-value=3.7e+02 Score=23.58 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=40.5
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccc-cccC
Q 002077 814 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN-LGLN 884 (972)
Q Consensus 814 ~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg-~GLN 884 (972)
..+..++||...-......+...|...|+.+..... -.++++.+.....+.++|+.....+ .|+.
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~------~~~al~~l~~~~~~dlvilD~~l~~~~g~~ 77 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPS------GSAFFQHRSQLSTCDLLIVSDQLVDLSIFS 77 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS------HHHHHHTGGGGGSCSEEEEETTCTTSCHHH
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCC------HHHHHHHHHhCCCCCEEEEeCCCCCCCHHH
Confidence 334569999999999999999999988886543321 1244555554024666776655432 3443
No 219
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=23.37 E-value=85 Score=28.38 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=27.2
Q ss_pred eEEEEec-chHHHHHHHHHHHhCCCcEEEEeCCCC
Q 002077 819 KSIVFSQ-WTRMLDLVENSLNQHCIQYRRLDGTMS 852 (972)
Q Consensus 819 KvIVFSq-ft~~ld~L~~~L~~~gi~~~~ldGs~s 852 (972)
+|||||+ --.........|...|+++..|+|++.
T Consensus 91 ~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 91 NIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred eEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 8999995 444456778889999999999999873
No 220
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.32 E-value=1.8e+02 Score=25.79 Aligned_cols=45 Identities=24% Similarity=0.207 Sum_probs=35.8
Q ss_pred eEEEEecch-HHHH------HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhh
Q 002077 819 KSIVFSQWT-RMLD------LVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 863 (972)
Q Consensus 819 KvIVFSqft-~~ld------~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F 863 (972)
+|+||+.-. .+.. .+...|...+|.|..++=......|+++.+.+
T Consensus 9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 9 VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred EEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 788997643 2344 68889999999999999988888888777776
No 221
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=22.52 E-value=96 Score=36.56 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=26.0
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~ 320 (972)
.|-+.|+.+|.. ...+ .++---.|.|||.+.+.-|.+.
T Consensus 9 ~Ln~~Q~~av~~----~~~~-----~lV~a~aGsGKT~~l~~ri~~l 46 (647)
T 3lfu_A 9 SLNDKQREAVAA----PRSN-----LLVLAGAGSGKTRVLVHRIAWL 46 (647)
T ss_dssp TCCHHHHHHHTC----CSSC-----EEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC----CCCC-----EEEEECCCCCHHHHHHHHHHHH
Confidence 588999999961 1111 2333457999999988877653
No 222
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=22.08 E-value=2.1e+02 Score=31.56 Aligned_cols=97 Identities=10% Similarity=0.073 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCC------CHHHHHHHHHhhhc--CCCeeEEEEec-CccccccCCC------CCCEEEE
Q 002077 829 MLDLVENSLNQHCIQYRRLDGTM------SLPARDRAVKDFNT--DREITVMLMSL-KAGNLGLNMV------AASHVIL 893 (972)
Q Consensus 829 ~ld~L~~~L~~~gi~~~~ldGs~------s~~~R~~~I~~F~~--~~~~~VlLiSl-kagg~GLNLt------~A~~VI~ 893 (972)
.+..+-+.|.+.|+.-+.+-|++ +.++|.++++...+ +..+.|+.... ....+-+.|. .|+.|..
T Consensus 81 al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 160 (360)
T 4dpp_A 81 AYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALH 160 (360)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34445556667899999999986 57899998887764 34666665321 1111222232 3789999
Q ss_pred ecCCCCCChHHHHhHhhcccCCcccEEEEEEe
Q 002077 894 LDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLT 925 (972)
Q Consensus 894 ~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli 925 (972)
+-|.|++..++..+.-.-.+-..-||.+|.+=
T Consensus 161 v~PyY~k~sq~gl~~hf~~IA~a~PiilYNiP 192 (360)
T 4dpp_A 161 INPYYGKTSIEGLIAHFQSVLHMGPTIIYNVP 192 (360)
T ss_dssp ECCCSSCCCHHHHHHHHHTTGGGSCEEEEECH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCC
Confidence 99999988766554444444444589888853
No 223
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.89 E-value=32 Score=32.04 Aligned_cols=33 Identities=24% Similarity=0.667 Sum_probs=23.7
Q ss_pred cccccccCCCCCCCccc----ccCCcchhhhhHhhhh
Q 002077 682 SSAICCVCSDPPEDSVV----TMCGHVFCYQCASEYI 714 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vi----t~CgH~fC~~Ci~~~~ 714 (972)
....|.+|...+....- -.||++||..|....+
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 45689999887653322 2599999999987643
No 224
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.87 E-value=1.2e+02 Score=26.66 Aligned_cols=61 Identities=20% Similarity=0.121 Sum_probs=41.6
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc-cccccCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA-GNLGLNM 885 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka-gg~GLNL 885 (972)
.+|||...-......+...|...|+.+..... .. ++++.+... .+.++|+.... +..|+.+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~---~a~~~l~~~-~~dlii~d~~l~~~~g~~~ 68 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHN---GF---DAGIKLSTF-EPAIMTLDLSMPKLDGLDV 68 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS---HH---HHHHHHHHT-CCSEEEEESCBTTBCHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCC---HH---HHHHHHHhc-CCCEEEEecCCCCCCHHHH
Confidence 49999999999999999999998887654322 22 344444433 56678877665 3345554
No 225
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=21.55 E-value=54 Score=28.89 Aligned_cols=52 Identities=25% Similarity=0.507 Sum_probs=37.1
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFS 737 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s 737 (972)
+...|-.|.-... .+|....|.+|..|+.-.+. ..+.|| -|...+-....++
T Consensus 27 G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~-~SdrCp--IC~~pLPtkl~~~ 78 (99)
T 2ko5_A 27 GPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLS-VSNRCP--ICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCS-SSSEET--TTTEECCCCSCTT
T ss_pred CcccChhhccccC-CeeeecchhhHHHHHHHHHh-hccCCc--ccCCcCCcceecC
Confidence 3566777764433 68888999999999998775 345787 5777776655443
No 226
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=20.58 E-value=3.7e+02 Score=23.12 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=41.5
Q ss_pred CceEEEEec-chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecC
Q 002077 817 PIKSIVFSQ-WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 877 (972)
Q Consensus 817 ~~KvIVFSq-ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlk 877 (972)
+.+|+||+. |=.....+...|.+.|+.|..++-......++.+.+.......+.++++.-+
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~ 76 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQ 76 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCE
Confidence 458999976 4456788888899999999999988776666555444312335555555533
No 227
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=20.40 E-value=5.1e+02 Score=25.11 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=48.1
Q ss_pred ceEEEEecchHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCcc-----ccccCCCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQH-----CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG-----NLGLNMVA 887 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~-----gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkag-----g~GLNLt~ 887 (972)
.++||.+.....++-+...+++. ++.+..+.|..+...+.+.+. .. .+.|++.+.... ...+++..
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~-~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KN-CPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HS-CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cC-CCCEEEeCHHHHHHHHHhCCCCccc
Confidence 38999999988877777766653 788999999987666554443 22 456777775432 12355666
Q ss_pred CCEEEE
Q 002077 888 ASHVIL 893 (972)
Q Consensus 888 A~~VI~ 893 (972)
.+.||+
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666664
Done!