Query 002077
Match_columns 972
No_of_seqs 330 out of 2306
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 11:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002077.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002077hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ix1 c.37.1.19 (X:390-735) 100.0 7.3E-43 5.3E-47 390.2 24.1 263 583-972 8-272 (346)
2 d1z5za1 c.37.1.19 (A:663-906) 100.0 2.2E-41 1.6E-45 361.7 23.5 238 587-972 1-239 (244)
3 d1z63a1 c.37.1.19 (A:432-661) 100.0 2.8E-33 2E-37 295.8 14.9 185 265-575 4-223 (230)
4 d1z3ix2 c.37.1.19 (X:92-389) R 100.0 5E-32 3.6E-36 297.3 13.1 180 264-556 46-239 (298)
5 d2fwra1 c.37.1.19 (A:257-456) 99.8 6.5E-22 4.7E-26 203.5 7.4 122 770-929 77-199 (200)
6 d1wp9a2 c.37.1.19 (A:201-486) 99.8 2.8E-19 2E-23 193.8 12.3 135 770-936 141-283 (286)
7 d1t5ia_ c.37.1.19 (A:) Spliceo 99.7 1.6E-17 1.2E-21 165.6 14.8 136 770-941 11-146 (168)
8 d1s2ma2 c.37.1.19 (A:252-422) 99.7 2.3E-17 1.7E-21 165.0 14.2 130 770-936 16-145 (171)
9 d1hv8a2 c.37.1.19 (A:211-365) 99.7 5.3E-17 3.9E-21 159.6 13.6 112 819-936 30-141 (155)
10 d1fuka_ c.37.1.19 (A:) Initiat 99.7 2.1E-16 1.5E-20 156.4 14.5 124 770-928 11-134 (162)
11 d2j0sa2 c.37.1.19 (A:244-411) 99.6 8.2E-16 6E-20 153.0 14.3 128 771-935 19-146 (168)
12 d2fz4a1 c.37.1.19 (A:24-229) D 99.6 4.9E-16 3.5E-20 159.9 10.7 94 271-445 67-161 (206)
13 d2rb4a1 c.37.1.19 (A:307-474) 99.6 2.3E-15 1.7E-19 149.8 13.8 113 818-936 33-151 (168)
14 d1oywa3 c.37.1.19 (A:207-406) 99.5 3.1E-14 2.3E-18 145.3 14.0 116 771-919 15-130 (200)
15 d1rifa_ c.37.1.23 (A:) DNA hel 99.4 1.2E-13 8.4E-18 148.7 11.6 107 271-445 110-217 (282)
16 d1t5la2 c.37.1.19 (A:415-595) 99.4 2.1E-12 1.5E-16 129.3 17.7 115 771-916 14-133 (181)
17 d1wp9a1 c.37.1.19 (A:1-200) pu 99.4 2.4E-13 1.8E-17 137.9 10.2 106 273-446 8-115 (200)
18 d1c4oa2 c.37.1.19 (A:410-583) 99.4 1.9E-12 1.4E-16 128.0 14.7 113 772-915 15-132 (174)
19 d2bmfa2 c.37.1.14 (A:178-482) 99.2 2.7E-11 2E-15 130.2 10.9 93 819-918 180-292 (305)
20 d2p6ra3 c.37.1.19 (A:1-202) He 99.1 1.5E-10 1.1E-14 117.5 10.1 102 274-445 25-127 (202)
21 d1gkub2 c.37.1.16 (B:251-498) 98.9 5.5E-11 4E-15 125.0 -0.4 88 819-917 27-118 (248)
22 d1jr6a_ c.37.1.14 (A:) HCV hel 98.9 8.7E-10 6.3E-14 105.0 7.6 96 819-928 37-136 (138)
23 d1gkub1 c.37.1.16 (B:1-250) He 98.9 2.5E-09 1.8E-13 111.0 11.1 105 274-445 43-155 (237)
24 d1a1va1 c.37.1.14 (A:190-325) 98.8 5.7E-09 4.1E-13 98.6 9.9 52 385-445 34-86 (136)
25 d2p6ra4 c.37.1.19 (A:203-403) 98.7 1.2E-08 8.8E-13 103.3 9.1 83 844-928 97-186 (201)
26 d1yksa1 c.37.1.14 (A:185-324) 98.6 2.9E-08 2.1E-12 92.8 8.8 22 298-319 9-30 (140)
27 d1a1va2 c.37.1.14 (A:326-624) 98.6 1.8E-08 1.3E-12 106.0 6.3 104 819-928 38-154 (299)
28 d1gm5a4 c.37.1.19 (A:550-755) 98.6 7.6E-09 5.5E-13 104.8 2.8 119 770-919 11-141 (206)
29 d1gm5a3 c.37.1.19 (A:286-549) 98.5 3.4E-07 2.5E-11 95.8 12.3 115 271-447 80-201 (264)
30 d1fbva4 g.44.1.1 (A:356-434) C 98.5 6.7E-08 4.9E-12 82.5 5.2 56 675-732 15-70 (79)
31 d1rmda2 g.44.1.1 (A:1-86) V(D) 98.4 4.8E-08 3.5E-12 84.5 3.1 48 684-733 24-71 (86)
32 d1oywa2 c.37.1.19 (A:1-206) Re 98.4 2.1E-07 1.5E-11 93.9 7.9 97 274-445 25-128 (206)
33 d1hv8a1 c.37.1.19 (A:3-210) Pu 98.3 5.4E-07 3.9E-11 91.3 8.8 107 274-445 26-134 (208)
34 d2eyqa3 c.37.1.19 (A:546-778) 98.3 2.9E-06 2.1E-10 87.0 14.0 113 272-446 53-172 (233)
35 d1jm7a_ g.44.1.1 (A:) brca1 RI 98.3 3.5E-07 2.6E-11 82.1 5.8 61 669-732 8-70 (103)
36 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 98.3 1.7E-07 1.2E-11 79.8 2.9 50 682-733 7-56 (78)
37 d2c2la2 g.44.1.2 (A:225-304) S 98.2 1.7E-07 1.2E-11 80.2 1.7 50 682-733 6-55 (80)
38 d2eyqa5 c.37.1.19 (A:779-989) 98.2 3.3E-06 2.4E-10 84.5 10.8 97 819-917 33-132 (211)
39 d2baya1 g.44.1.2 (A:1-56) Pre- 98.1 4.8E-07 3.5E-11 71.8 1.9 48 685-735 2-50 (56)
40 d1qdea_ c.37.1.19 (A:) Initiat 98.0 1.4E-05 1E-09 80.9 12.1 108 274-446 32-141 (212)
41 d2g9na1 c.37.1.19 (A:21-238) I 98.0 1.6E-05 1.1E-09 80.8 11.8 108 274-446 34-145 (218)
42 d1t6na_ c.37.1.19 (A:) Spliceo 97.9 1.6E-05 1.1E-09 80.1 11.0 109 274-446 23-135 (207)
43 d1g25a_ g.44.1.1 (A:) TFIIH Ma 97.9 1.1E-06 7.8E-11 71.9 1.2 49 683-733 3-56 (65)
44 d1chca_ g.44.1.1 (A:) Immediat 97.9 2.2E-06 1.6E-10 70.7 3.1 47 682-731 4-51 (68)
45 d1veca_ c.37.1.19 (A:) DEAD bo 97.9 2.2E-05 1.6E-09 79.0 10.8 108 274-445 25-135 (206)
46 d1tf5a4 c.37.1.19 (A:396-570) 97.8 5.8E-05 4.3E-09 73.0 12.6 119 771-922 17-143 (175)
47 d1ur6b_ g.44.1.1 (B:) Not-4 N- 97.8 3.4E-06 2.5E-10 65.6 3.1 46 685-732 2-51 (52)
48 d1bora_ g.44.1.1 (A:) Acute pr 97.8 2.6E-06 1.9E-10 67.3 2.2 44 683-732 6-49 (56)
49 d1jm7b_ g.44.1.1 (B:) bard1 RI 97.8 8.1E-06 5.9E-10 72.1 5.2 45 683-732 22-67 (97)
50 d1wrba1 c.37.1.19 (A:164-401) 97.8 3.6E-05 2.6E-09 79.2 10.6 117 274-446 43-162 (238)
51 d2j0sa1 c.37.1.19 (A:22-243) P 97.7 4.1E-05 3E-09 77.8 10.1 107 274-445 39-148 (222)
52 d1iyma_ g.44.1.1 (A:) EL5 RING 97.7 1.1E-05 8.1E-10 63.3 3.8 46 682-730 4-53 (55)
53 d1yksa2 c.37.1.14 (A:325-623) 97.6 8.6E-05 6.3E-09 78.6 10.2 91 819-916 38-147 (299)
54 d1wgma_ g.44.1.2 (A:) Ubiquiti 97.4 2E-05 1.5E-09 69.6 2.4 49 682-733 21-70 (98)
55 d1q0ua_ c.37.1.19 (A:) Probabl 97.4 0.00022 1.6E-08 71.1 9.7 38 274-318 23-60 (209)
56 d1s2ma1 c.37.1.19 (A:46-251) P 97.3 0.00028 2.1E-08 70.4 9.9 108 274-446 23-133 (206)
57 d1v87a_ g.44.1.1 (A:) Deltex p 97.2 3.8E-05 2.8E-09 69.6 1.9 48 683-732 25-94 (114)
58 d3dplr1 g.44.1.1 (R:19-106) RI 96.6 0.0005 3.6E-08 59.0 3.4 46 683-731 21-84 (88)
59 d1wima_ g.44.1.1 (A:) UbcM4-in 96.6 0.00038 2.8E-08 60.5 2.3 48 682-729 4-61 (94)
60 d1nkta4 c.37.1.19 (A:397-615) 96.2 0.022 1.6E-06 55.8 12.9 132 770-939 16-199 (219)
61 d1vyxa_ g.44.1.3 (A:) IE1B pro 96.0 0.0014 9.9E-08 51.9 2.6 48 682-731 5-58 (60)
62 d1tf5a3 c.37.1.19 (A:1-226,A:3 92.1 0.13 9.7E-06 52.0 7.8 58 385-446 122-183 (273)
63 d1nkta3 c.37.1.19 (A:-15-225,A 90.8 0.19 1.4E-05 51.2 7.3 58 385-446 139-200 (288)
64 d1w36d1 c.37.1.19 (D:2-360) Ex 84.3 0.9 6.6E-05 48.0 8.1 38 275-319 149-186 (359)
65 d1gm5a3 c.37.1.19 (A:286-549) 75.8 4.6 0.00034 40.3 9.7 100 766-896 110-213 (264)
66 d2eyqa3 c.37.1.19 (A:546-778) 67.6 9.1 0.00066 37.3 9.5 130 767-931 83-216 (233)
67 d2cs3a1 g.44.1.3 (A:8-87) Prot 67.0 1.9 0.00014 33.7 3.2 41 683-723 8-56 (80)
68 d1t5la1 c.37.1.19 (A:2-414) Nu 62.9 6.7 0.00049 41.7 8.0 25 385-409 57-82 (413)
69 d1a5ta2 c.37.1.20 (A:1-207) de 55.0 6.6 0.00048 37.3 5.7 48 274-321 2-49 (207)
70 d1uaaa1 c.37.1.19 (A:2-307) DE 47.1 10 0.00075 37.4 5.9 37 274-319 1-37 (306)
71 d1c4oa1 c.37.1.19 (A:2-409) Nu 42.4 21 0.0016 37.5 7.8 25 385-409 54-79 (408)
72 d1byka_ c.93.1.1 (A:) Trehalos 38.6 80 0.0059 29.6 11.1 93 826-919 17-119 (255)
73 d1ibia2 g.39.1.3 (A:145-175) C 38.3 5 0.00036 25.5 1.0 28 685-712 2-30 (31)
74 d1wika_ c.47.1.1 (A:) Thioredo 32.0 48 0.0035 27.7 7.0 59 819-878 16-80 (109)
75 d1ktea_ c.47.1.1 (A:) Glutared 30.3 56 0.0041 26.9 7.1 58 818-875 12-75 (105)
76 d1zgza1 c.23.1.1 (A:2-121) Tor 29.7 67 0.0049 26.7 7.7 55 817-878 1-55 (120)
77 d2dara1 g.39.1.3 (A:53-84) PDZ 28.3 16 0.0012 23.8 2.2 30 685-714 1-31 (32)
78 d1xhfa1 c.23.1.1 (A:2-122) Aer 26.9 58 0.0042 27.3 6.7 86 819-915 4-96 (121)
79 d1pjra1 c.37.1.19 (A:1-318) DE 26.7 29 0.0021 34.2 5.4 38 273-319 10-47 (318)
80 d1zbdb_ g.50.1.1 (B:) Effector 26.2 55 0.004 28.0 6.4 31 682-712 47-82 (124)
81 d1yioa2 c.23.1.1 (A:3-130) Res 25.7 1E+02 0.0076 25.7 8.3 85 819-914 4-96 (128)
82 d1xpja_ c.108.1.18 (A:) Hypoth 24.6 32 0.0023 29.8 4.4 45 774-847 26-83 (124)
83 d1kgsa2 c.23.1.1 (A:2-123) Pho 22.2 1.4E+02 0.0099 24.7 8.3 87 818-915 2-96 (122)
84 d1u0sy_ c.23.1.1 (Y:) CheY pro 21.9 75 0.0055 26.4 6.4 80 819-904 3-90 (118)
85 d1joca1 g.50.1.1 (A:1348-1411) 21.4 17 0.0013 27.6 1.7 32 682-713 7-42 (64)
86 d1h75a_ c.47.1.1 (A:) Glutared 20.6 1.1E+02 0.0077 23.3 6.6 55 819-875 2-57 (76)
87 d1w25a1 c.23.1.1 (A:2-140) Res 20.4 2.3E+02 0.017 23.7 11.1 86 819-915 3-98 (139)
88 d2a9pa1 c.23.1.1 (A:2-118) DNA 20.1 1.1E+02 0.008 25.2 7.1 86 819-915 2-94 (117)
No 1
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=7.3e-43 Score=390.25 Aligned_cols=263 Identities=26% Similarity=0.415 Sum_probs=209.7
Q ss_pred cCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHH
Q 002077 583 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGE 662 (972)
Q Consensus 583 ~LP~k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e 662 (972)
.||||++.++.|+||+.|+++|+.+....+. ...........++|..+++|||+|+||.|+..........
T Consensus 8 ~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~-----~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~---- 78 (346)
T d1z3ix1 8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKP-----VESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEG---- 78 (346)
T ss_dssp TSCCEEEEEEEECCCHHHHHHHHHHHHHHCG-----GGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTT----
T ss_pred cCCCCEEEEEEeCCCHHHHHHHHHHHHHHHH-----HHhhhcCCchHHHHHHHHHHHHHhCCHHHhhhhhcccccc----
Confidence 6999999999999999999999988764431 1112222345678999999999999999876321100000
Q ss_pred HhhcCChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccc
Q 002077 663 MAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLK 742 (972)
Q Consensus 663 ~~~~l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~ 742 (972)
.+ +. .. ..|.
T Consensus 79 ----------------~~-----~~-----------------------~~-------~~~~------------------- 88 (346)
T d1z3ix1 79 ----------------FD-----GA-----------------------LD-------LFPQ------------------- 88 (346)
T ss_dssp ----------------CT-----TG-----------------------GG-------TSCS-------------------
T ss_pred ----------------cc-----ch-----------------------hh-------hccc-------------------
Confidence 00 00 00 0000
Q ss_pred cccCCCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhcc-ccCccchhhhhcccCCCCCCccccCCCCCCCceEE
Q 002077 743 NCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCE-LNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSI 821 (972)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvI 821 (972)
...........|+|+..|.++|..... .+. |+|
T Consensus 89 -----------------~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~-----------------------------Kvl 122 (346)
T d1z3ix1 89 -----------------NYSTKAVEPQLSGKMLVLDYILAMTRTTTSD-----------------------------KVV 122 (346)
T ss_dssp -----------------SCCSSSCCGGGSHHHHHHHHHHHHHHHHCCC-----------------------------EEE
T ss_pred -----------------cccccccccccCHHHHHHHHHHHHHHHhcCC-----------------------------cee
Confidence 000000112368999999999987653 333 999
Q ss_pred EEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCC-CeeEEEEecCccccccCCCCCCEEEEecCCCCC
Q 002077 822 VFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNP 900 (972)
Q Consensus 822 VFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~-~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp 900 (972)
|||+|+.++++|+..|...|+.|.+++|+++.++|+++++.|+++. ...|||+|++|||+||||+.|++||+|||||||
T Consensus 123 IFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp 202 (346)
T d1z3ix1 123 LVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 202 (346)
T ss_dssp EEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSH
T ss_pred EEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999999864 457999999999999999999999999999999
Q ss_pred ChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhcC
Q 002077 901 TTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972 (972)
Q Consensus 901 ~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~~ 972 (972)
+.+.||+||+||+||+++|+||+|+++|||||+|+++|..|..++..+++++.. ....++.+||+.||.+
T Consensus 203 ~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~~~~l~~lf~~ 272 (346)
T d1z3ix1 203 ANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQD--VERHFSLGELRELFSL 272 (346)
T ss_dssp HHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSS--CCCSSCHHHHHHHTCC
T ss_pred chHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCchh--hhhcCCHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999986542 3456899999999964
No 2
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=2.2e-41 Score=361.74 Aligned_cols=238 Identities=30% Similarity=0.461 Sum_probs=196.3
Q ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhhcCCCcccccccccccccchHHHhhc
Q 002077 587 KTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 666 (972)
Q Consensus 587 k~~~~~~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~il~~L~rLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~ 666 (972)
|.++.++|+||++|+++|+.+.......+ ...........+|..|++|||+|+||.|+.....
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~~------------- 63 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ------------- 63 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCC-------------
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHH----hhcccchhHHHHHHHHHHHHhhhcCCcccccccc-------------
Confidence 56889999999999999999887665432 2333345667889999999999999988753110
Q ss_pred CChHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccccccccccccccccC
Q 002077 667 LPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVS 746 (972)
Q Consensus 667 l~~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~~s~~~l~~~~~ 746 (972)
T Consensus 64 -------------------------------------------------------------------------------- 63 (244)
T d1z5za1 64 -------------------------------------------------------------------------------- 63 (244)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccccCCCCCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecc
Q 002077 747 DDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQW 826 (972)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqf 826 (972)
....|+|+.+++++|.+....|. |+||||+|
T Consensus 64 --------------------~~~~S~K~~~l~~~l~~~~~~g~-----------------------------kviIFs~~ 94 (244)
T d1z5za1 64 --------------------SVRRSGKMIRTMEIIEEALDEGD-----------------------------KIAIFTQF 94 (244)
T ss_dssp --------------------CSTTCHHHHHHHHHHHHHHHTTC-----------------------------CEEEEESC
T ss_pred --------------------chhhhhHHHHHHHHHHhhccccc-----------------------------ceEEEeec
Confidence 01157899999999999887776 99999999
Q ss_pred hHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHH
Q 002077 827 TRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQ 905 (972)
Q Consensus 827 t~~ld~L~~~L~~~-gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~Q 905 (972)
+.++++|+..|... |+.+.+++|+++.++|++++++|++++++.|||+++++||+||||+.|++||++||+|||..+.|
T Consensus 95 ~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Q 174 (244)
T d1z5za1 95 VDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQ 174 (244)
T ss_dssp HHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--
T ss_pred eehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccccccccccccchhhhhhhcCchhhhHHHhh
Confidence 99999999999765 99999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HhHhhcccCCcccEEEEEEecCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHhhcC
Q 002077 906 AVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 972 (972)
Q Consensus 906 AigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~~K~~li~~a~g~~~~~~~~~~lt~edl~~Lf~~ 972 (972)
|+||+||+||+++|+||+|+++||||++|++++..|.+++..+++... ...+.++.+||+.||.+
T Consensus 175 a~~R~~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~K~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~ 239 (244)
T d1z5za1 175 ATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 239 (244)
T ss_dssp ------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTT--HHHHTSCHHHHHHHHSC
T ss_pred hcceeeecCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhCCh--hhhhcCCHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999998743 34567899999999975
No 3
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=2.8e-33 Score=295.75 Aligned_cols=185 Identities=34% Similarity=0.552 Sum_probs=152.0
Q ss_pred CCCCCcccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCC
Q 002077 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 344 (972)
Q Consensus 265 ~~P~~~~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (972)
-+|+++ +..|+|||++||.||..++.. ..|||||||||||||+++|+++......
T Consensus 4 ~~P~~~-~~~L~~yQ~~~v~~~~~~~~~---~~g~iLaDe~GlGKT~~~i~~~~~~~~~--------------------- 58 (230)
T d1z63a1 4 LEPYNI-KANLRPYQIKGFSWMRFMNKL---GFGICLADDMGLGKTLQTIAVFSDAKKE--------------------- 58 (230)
T ss_dssp CCCCSC-SSCCCHHHHHHHHHHHHHHHT---TCCEEECCCTTSCHHHHHHHHHHHHHHT---------------------
T ss_pred cCchhh-hcchhHHHHHHHHHHHHhhhc---CCCEEEEeCCCCChHHHHHHhhhhhhhc---------------------
Confidence 457776 778999999999999988764 4789999999999999999998764432
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCCCCC
Q 002077 345 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT 424 (972)
Q Consensus 345 d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~ 424 (972)
.+.+++|||||++++.||.+|+.+|+. ...+..+++....
T Consensus 59 -------------------------------------~~~~~~LIv~p~~l~~~W~~e~~~~~~---~~~~~~~~~~~~~ 98 (230)
T d1z63a1 59 -------------------------------------NELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK 98 (230)
T ss_dssp -------------------------------------TCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS
T ss_pred -------------------------------------ccccccceecchhhhhHHHHHHHhhcc---cccceeeccccch
Confidence 445679999999999999999999986 4566666654433
Q ss_pred CChhhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCCCCCCCCCCcccCC
Q 002077 425 KDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGC 504 (972)
Q Consensus 425 ~~~~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~~k~~~~~~~~~~~ 504 (972)
....++||||++|+.+.+..
T Consensus 99 ---~~~~~~~vvi~~~~~~~~~~--------------------------------------------------------- 118 (230)
T d1z63a1 99 ---IKLEDYDIILTTYAVLLRDT--------------------------------------------------------- 118 (230)
T ss_dssp ---CCGGGSSEEEEEHHHHTTCH---------------------------------------------------------
T ss_pred ---hhccCcCEEEeeHHHHHhHH---------------------------------------------------------
Confidence 23567899999999986521
Q ss_pred CCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH--------------------------
Q 002077 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY-------------------------- 556 (972)
Q Consensus 505 ~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~-------------------------- 556 (972)
.+..+.|++||+||||.+||+.+..+++++.+.+++ .+++||+.++..+.|
T Consensus 119 -~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~ 197 (230)
T d1z63a1 119 -RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIK 197 (230)
T ss_dssp -HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHH
T ss_pred -HHhcccceEEEEEhhhcccccchhhhhhhhhhccceEEEEecchHHhHHHHHHHHHHhhCCCcCCCHHHHHHHHhhhhh
Confidence 145678999999999999999999999999999887 666999988754432
Q ss_pred -------HHHHHHHHHHHhhhccccc
Q 002077 557 -------KKLQAVLRAIMLRRTKGTF 575 (972)
Q Consensus 557 -------~~L~~lL~~~~LRRtK~~v 575 (972)
++|+.+|++||+||||.++
T Consensus 198 ~~~~~~~~~L~~~l~~~~lRr~K~d~ 223 (230)
T d1z63a1 198 KGDNMAKEELKAIISPFILRRTKYDK 223 (230)
T ss_dssp TTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred ccCHHHHHHHHHHhhccEEEEecCCc
Confidence 5688999999999999984
No 4
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.97 E-value=5e-32 Score=297.34 Aligned_cols=180 Identities=24% Similarity=0.286 Sum_probs=138.9
Q ss_pred cCCCCCcccccCchhHHHHHHHHHHhhhcC--CCccCceeecCCCChhHHHHHHHHHhhccccccchhhhcccccccccc
Q 002077 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRS--LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALN 341 (972)
Q Consensus 264 ~~~P~~~~~~~LrpyQk~al~wml~~e~~~--~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~ 341 (972)
..+||.+ ...|||||++||.||..+.... ....|||||||||||||+|+||++.......
T Consensus 46 ~~~~p~l-~~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~----------------- 107 (298)
T d1z3ix2 46 VVVDPVL-SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----------------- 107 (298)
T ss_dssp EECCHHH-HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-----------------
T ss_pred eeEChhh-hccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhc-----------------
Confidence 3455655 5579999999999999876432 2467899999999999999999987654320
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchhHHHHHHHHHhhCCCCCCeEEEEEeCC
Q 002077 342 LDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG 421 (972)
Q Consensus 342 ~~~d~~~~~~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlvy~G~ 421 (972)
.......+++|||||++|+.||.+||.+|++. .+.++.++|.
T Consensus 108 ------------------------------------~~~~~~~~~~LIV~P~sl~~qW~~Ei~k~~~~--~~~~v~~~~~ 149 (298)
T d1z3ix2 108 ------------------------------------PDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGG 149 (298)
T ss_dssp ------------------------------------TTSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSS
T ss_pred ------------------------------------ccccCCCCcEEEEccchhhHHHHHHHHhhcCC--ceeEEEEeCc
Confidence 00012346799999999999999999999875 5667777776
Q ss_pred CCCCCh----------hhhcCCCEEEEchhhhhccCCCCCCCchhhhhhhcccccCCCchhhhhhhhhccccccccccCC
Q 002077 422 SRTKDP----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG 491 (972)
Q Consensus 422 ~r~~~~----------~~l~~~DVVItTY~~l~~e~~k~~~~~~~~~~~~~~~~~g~~s~~s~~k~~k~~~~~~kk~k~~ 491 (972)
.+.... .....++|+|+||..+.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~-------------------------------------------- 185 (298)
T d1z3ix2 150 SKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA-------------------------------------------- 185 (298)
T ss_dssp CHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--------------------------------------------
T ss_pred hHHHHHHHHHHhhhccCccccceEEEEeecccccch--------------------------------------------
Confidence 643211 12346789999999997642
Q ss_pred CCCCCCCCcccCCCCCccceeeEEEEcccccccccchHHHHHHHhhhhcc--ceeeccCcCCcHHHH
Q 002077 492 KKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR--STIKIPISRNSLHGY 556 (972)
Q Consensus 492 ~k~~~~~~~~~~~~~L~~~~w~rVIlDEAH~IKN~~t~~~ka~~~L~a~~--~~i~tPi~~~~~~~~ 556 (972)
..+..+.|++||+||||++||..|+.+++++.|.+.+ .+++||+.++..+.+
T Consensus 186 -------------~~l~~~~~~~vI~DEaH~ikn~~s~~~~a~~~l~~~~rllLTGTPi~N~~~dl~ 239 (298)
T d1z3ix2 186 -------------EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYF 239 (298)
T ss_dssp -------------TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCH
T ss_pred -------------hcccccceeeeecccccccccccchhhhhhhccccceeeeecchHHhhhhHHHH
Confidence 2366778999999999999999999999999998887 567999998765544
No 5
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.84 E-value=6.5e-22 Score=203.50 Aligned_cols=122 Identities=17% Similarity=0.216 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.++|+++|.++|.... + .|+||||++..+++.|...|.. ..++|
T Consensus 77 ~~~K~~~l~~ll~~~~--~-----------------------------~k~lvf~~~~~~~~~l~~~l~~-----~~i~g 120 (200)
T d2fwra1 77 SKNKIRKLREILERHR--K-----------------------------DKIIIFTRHNELVYRISKVFLI-----PAITH 120 (200)
T ss_dssp CSHHHHHHHHHHHHTS--S-----------------------------SCBCCBCSCHHHHHHHHHHTTC-----CBCCS
T ss_pred cHHHHHHHHHHHHhCC--C-----------------------------CcEEEEeCcHHHHHHHHhhcCc-----ceeeC
Confidence 4679999999988642 2 3999999999999999887743 34799
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcc-cEEEEEEecCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR-PVTVTRLTIRD 928 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k-~V~V~rli~~d 928 (972)
.++..+|++++++|+++ +++||+ +++++++|+||+.|++||++|++|||..+.||+||++|+||.+ .|+||.|+++|
T Consensus 121 ~~~~~~R~~~l~~F~~~-~~~vLv-~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~ 198 (200)
T d2fwra1 121 RTSREEREEILEGFRTG-RFRAIV-SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 198 (200)
T ss_dssp SSCSHHHHTHHHHHHHS-SCSBCB-CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCHHHHHHHHHHhhcC-Ceeeee-ecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecCC
Confidence 99999999999999975 777754 7899999999999999999999999999999999999999966 59999999999
Q ss_pred C
Q 002077 929 T 929 (972)
Q Consensus 929 T 929 (972)
|
T Consensus 199 T 199 (200)
T d2fwra1 199 T 199 (200)
T ss_dssp C
T ss_pred C
Confidence 7
No 6
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.77 E-value=2.8e-19 Score=193.78 Aligned_cols=135 Identities=20% Similarity=0.274 Sum_probs=117.1
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.++|+..+.++|.+...... +.|+||||++..+++.++..|.+.|+++..++|
T Consensus 141 ~~pK~~~l~~~l~~~~~~~~---------------------------~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g 193 (286)
T d1wp9a2 141 DHPKMDKLKEIIREQLQRKQ---------------------------NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG 193 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHCT---------------------------TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCcHHHHHHHHHHHHHHhCC---------------------------CCcEEEEeCcHHhHHHHHHHHHHcCCceEEeec
Confidence 46899999999988765443 459999999999999999999999999999988
Q ss_pred C--------CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEE
Q 002077 850 T--------MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 921 (972)
Q Consensus 850 s--------~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 921 (972)
. ++..+|.++++.|+++ ++.|| ++|+++++|||+++|++||+||++|||....||+||++| .+++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~F~~g-~~~vL-v~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR---~~~~~~ 268 (286)
T d1wp9a2 194 QASKENDRGLSQREQKLILDEFARG-EFNVL-VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR---HMPGRV 268 (286)
T ss_dssp SSCC-------CCHHHHHHHHHHHT-SCSEE-EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCS---CCCSEE
T ss_pred cccccccchhchHHHHHHHHHHHcC-CCcEE-EEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCC---CCCCEE
Confidence 5 4556899999999986 67765 567999999999999999999999999999998888877 447889
Q ss_pred EEEecCCCHHHHHHH
Q 002077 922 TRLTIRDTVEDRILK 936 (972)
Q Consensus 922 ~rli~~dTIEe~Il~ 936 (972)
+.|++++|+||.++.
T Consensus 269 ~~l~~~~~~ee~~~~ 283 (286)
T d1wp9a2 269 IILMAKGTRDEAYYW 283 (286)
T ss_dssp EEEEETTSHHHHHHH
T ss_pred EEEEeCCCHHHHHHh
Confidence 999999999998864
No 7
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.72 E-value=1.6e-17 Score=165.62 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=116.5
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
.+.|+++|+++|.... + .|+||||.+..+++.|...|.+.|+.+..++|
T Consensus 11 ~~~K~~~L~~ll~~~~--~-----------------------------~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg 59 (168)
T d1t5ia_ 11 DNEKNRKLFDLLDVLE--F-----------------------------NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 59 (168)
T ss_dssp GGGHHHHHHHHHHHSC--C-----------------------------SSEEEECSSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred hHHHHHHHHHHHHhCC--C-----------------------------CeEEEEEeeeecchhhhhhhcccccccccccc
Confidence 4689999999997752 2 29999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dT 929 (972)
.|+..+|.++++.|+++ ++.|| +++.++++|+|++.+++||+||++||+....|++||++|.|++..+ +.|+.. .
T Consensus 60 ~~~~~~r~~~l~~F~~g-~~~iL-v~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~--i~l~~~-~ 134 (168)
T d1t5ia_ 60 GMPQEERLSRYQQFKDF-QRRIL-VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSD-E 134 (168)
T ss_dssp TSCHHHHHHHHHHHHTT-SCSEE-EESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECS-H
T ss_pred ccchhhhhhhhhhhccc-cceee-eccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEE--EEEECc-h
Confidence 99999999999999965 77775 5679999999999999999999999999999999999999987644 445554 3
Q ss_pred HHHHHHHHHHHH
Q 002077 930 VEDRILKLQDDK 941 (972)
Q Consensus 930 IEe~Il~lq~~K 941 (972)
-|.+++...+++
T Consensus 135 ~~~~~~~~i~~~ 146 (168)
T d1t5ia_ 135 NDAKILNDVQDR 146 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 366666555444
No 8
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.71 E-value=2.3e-17 Score=164.99 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=113.3
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.+|.++|.... ..|+||||.+..+++.|...|...|+.+..++|
T Consensus 16 ~~~K~~~L~~ll~~~~-------------------------------~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~ 64 (171)
T d1s2ma2 16 ERQKLHCLNTLFSKLQ-------------------------------INQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 64 (171)
T ss_dssp GGGHHHHHHHHHHHSC-------------------------------CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECT
T ss_pred HHHHHHHHHHHHHhCC-------------------------------CCceEEEEeeeehhhHhHHhhhccccccccccc
Confidence 3569999999997642 239999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 929 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dT 929 (972)
.++..+|.++++.|+.+ ...+|+ ++.++++|+|++.+++||+||+||||....||+||++|.|+... ++.|+.++
T Consensus 65 ~~~~~~r~~~~~~f~~~-~~~ilv-~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~--~i~~v~~~- 139 (171)
T d1s2ma2 65 RMKQQERNKVFHEFRQG-KVRTLV-CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWN- 139 (171)
T ss_dssp TSCHHHHHHHHHHHHTT-SSSEEE-ESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGG-
T ss_pred ccchhhhhhhhhhcccC-cccccc-chhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccE--EEEEeCHH-
Confidence 99999999999999976 666666 56999999999999999999999999999999999999998764 55677776
Q ss_pred HHHHHHH
Q 002077 930 VEDRILK 936 (972)
Q Consensus 930 IEe~Il~ 936 (972)
|..++.
T Consensus 140 -e~~~~~ 145 (171)
T d1s2ma2 140 -DRFNLY 145 (171)
T ss_dssp -GHHHHH
T ss_pred -HHHHHH
Confidence 555544
No 9
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.69 E-value=5.3e-17 Score=159.59 Aligned_cols=112 Identities=19% Similarity=0.295 Sum_probs=99.2
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 898 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W 898 (972)
|+||||.+..+++.|...|...|+....++|.++..+|..++++|+.+ +..||+ +++++++|+|++.+++||+||+||
T Consensus 30 k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~-~~~ilv-~T~~~~~Gid~~~v~~Vi~~d~p~ 107 (155)
T d1hv8a2 30 YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILI-ATDVMSRGIDVNDLNCVINYHLPQ 107 (155)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEE-ECTTHHHHCCCSCCSEEEESSCCS
T ss_pred CEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcc-cceeee-ehhHHhhhhhhccCcEEEEecCCC
Confidence 899999999999999999999999999999999999999999999976 666655 669999999999999999999999
Q ss_pred CCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHH
Q 002077 899 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936 (972)
Q Consensus 899 Np~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~ 936 (972)
||....|++||++|.|++..+ +.|+.+. |..+++
T Consensus 108 ~~~~y~qr~GR~gR~g~~g~~--i~~~~~~--d~~~~~ 141 (155)
T d1hv8a2 108 NPESYMHRIGRTGRAGKKGKA--ISIINRR--EYKKLR 141 (155)
T ss_dssp CHHHHHHHSTTTCCSSSCCEE--EEEECTT--SHHHHH
T ss_pred CHHHHHHHHHhcCcCCCCceE--EEEEchH--HHHHHH
Confidence 999999999999999987643 4456554 444444
No 10
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.67 E-value=2.1e-16 Score=156.37 Aligned_cols=124 Identities=16% Similarity=0.240 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|++.|.+++.... ..|+||||.+..+++.|...|...|+.+..++|
T Consensus 11 ~e~K~~~L~~ll~~~~-------------------------------~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~ 59 (162)
T d1fuka_ 11 EEYKYECLTDLYDSIS-------------------------------VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 59 (162)
T ss_dssp GGGHHHHHHHHHHHTT-------------------------------CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cHHHHHHHHHHHHhCC-------------------------------CCcEEEEEEEEchHHHHHHHHhhcCceEEEecc
Confidence 4569999999887642 239999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
.++..+|.++++.|+.+ +..|| ++++++++|+|++.+++||+||+||||....||+||++|.||... ++.|+..+
T Consensus 60 ~~~~~~r~~~l~~f~~~-~~~iL-v~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~--~i~~~~~~ 134 (162)
T d1fuka_ 60 DLPQQERDTIMKEFRSG-SSRIL-ISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNE 134 (162)
T ss_dssp TSCHHHHHHHHHHHHTT-SCSEE-EEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETT
T ss_pred CCchhhHHHHHHHHhhc-cccee-eccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccE--EEEEcCHH
Confidence 99999999999999976 66655 567999999999999999999999999999999999999998654 44566655
No 11
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63 E-value=8.2e-16 Score=152.99 Aligned_cols=128 Identities=22% Similarity=0.309 Sum_probs=111.6
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|+.+|.++|.... + .|+||||.....++.+...|...|+.+..++|.
T Consensus 19 ~~K~~~L~~ll~~~~--~-----------------------------~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~ 67 (168)
T d2j0sa2 19 EWKFDTLCDLYDTLT--I-----------------------------TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 67 (168)
T ss_dssp THHHHHHHHHHHHHT--S-----------------------------SEEEEECSSHHHHHHHHHHHHHTTCCCEEECTT
T ss_pred HHHHHHHHHHHHhCC--C-----------------------------CceEEEeeeHHHHHHHHHHhhhcccchhhhhhh
Confidence 469999999987642 2 399999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCH
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 930 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTI 930 (972)
++..+|.++++.|+++ ...+|+ +++++++|+|+..+++||+||+||++....||+||++|.|+... ++.|+.++
T Consensus 68 ~~~~~r~~~~~~fk~g-~~~iLv-~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~--~i~~~~~~-- 141 (168)
T d2j0sa2 68 MPQKERESIMKEFRSG-ASRVLI-STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV--AINFVKND-- 141 (168)
T ss_dssp SCHHHHHHHHHHHHHT-SSCEEE-ECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGG--
T ss_pred hhHHHHHHHHHHHhcC-CccEEe-ccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcE--EEEEECHH--
Confidence 9999999999999986 666654 66999999999999999999999999999999999999998654 45666666
Q ss_pred HHHHH
Q 002077 931 EDRIL 935 (972)
Q Consensus 931 Ee~Il 935 (972)
|..++
T Consensus 142 d~~~~ 146 (168)
T d2j0sa2 142 DIRIL 146 (168)
T ss_dssp GHHHH
T ss_pred HHHHH
Confidence 44444
No 12
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.61 E-value=4.9e-16 Score=159.88 Aligned_cols=94 Identities=24% Similarity=0.254 Sum_probs=72.0
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCC
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (972)
..++|||||++|+.++++. ..|||+++||+|||+++++++...
T Consensus 67 ~~~~Lr~yQ~eav~~~~~~-------~~~ll~~~tG~GKT~~a~~~~~~~------------------------------ 109 (206)
T d2fz4a1 67 AEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------ 109 (206)
T ss_dssp CCCCCCHHHHHHHHHHTTT-------SEEEEEESSSTTHHHHHHHHHHHS------------------------------
T ss_pred CCCCcCHHHHHHHHHHHhC-------CCcEEEeCCCCCceehHHhHHHHh------------------------------
Confidence 3568999999999988732 347999999999999998887521
Q ss_pred CCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhh
Q 002077 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (972)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~ 429 (972)
.+++|||||. +|+.||.+++.+|.+ ..+..+.|....
T Consensus 110 ---------------------------------~~~~Liv~p~~~L~~q~~~~~~~~~~----~~~~~~~~~~~~----- 147 (206)
T d2fz4a1 110 ---------------------------------STPTLIVVPTLALAEQWKERLGIFGE----EYVGEFSGRIKE----- 147 (206)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHHGGGCG----GGEEEESSSCBC-----
T ss_pred ---------------------------------cCceeEEEcccchHHHHHHHHHhhcc----cchhhccccccc-----
Confidence 1358999995 789999999999753 345566654332
Q ss_pred hcCCCEEEEchhhhhc
Q 002077 430 LAKYDVVLTTYSIVTN 445 (972)
Q Consensus 430 l~~~DVVItTY~~l~~ 445 (972)
..+++|+||..+..
T Consensus 148 --~~~i~i~t~~~~~~ 161 (206)
T d2fz4a1 148 --LKPLTVSTYDSAYV 161 (206)
T ss_dssp --CCSEEEEEHHHHHH
T ss_pred --ccccccceehhhhh
Confidence 35799999998865
No 13
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.60 E-value=2.3e-15 Score=149.76 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=93.7
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 897 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~ 897 (972)
.|+|||+.+...++.|...|...|+++..++|.++.++|.+++++|+.+ ..+|| ++++++++|+|++.+++||+||+|
T Consensus 33 ~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g-~~~il-v~Td~~~~Gid~~~v~~Vi~yd~P 110 (168)
T d2rb4a1 33 GQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVL-ITTNVCARGIDVKQVTIVVNFDLP 110 (168)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEE-EECCSCCTTTCCTTEEEEEESSCC
T ss_pred CcEEEEcCHHHHHHHHHHHHHhcCCcceecccchhhHHHHHHhhhhcCC-ceeee-echhhhhhhhccccccEEEeecCC
Confidence 3999999999999999999999999999999999999999999999976 66665 577999999999999999999999
Q ss_pred CCCC------hHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHH
Q 002077 898 WNPT------TEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 936 (972)
Q Consensus 898 WNp~------~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~ 936 (972)
|+++ ...||+||++|.|++ -.++.|+.++ |...+.
T Consensus 111 ~~~~~~~~~~~yihR~GR~gR~g~~--g~~i~~~~~~--d~~~l~ 151 (168)
T d2rb4a1 111 VKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVD--ELPSLM 151 (168)
T ss_dssp C--CCSCCHHHHHHHHCBC----CC--EEEEEEECGG--GHHHHH
T ss_pred CcccccCCHHHHHHHhhhcccCCCc--eEEEEEEcHH--HHHHHH
Confidence 9764 578999999999974 4566788777 444443
No 14
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.52 E-value=3.1e-14 Score=145.31 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|++.|+++|+... + .|+|||++.....+.|...|...|+.+..++|.
T Consensus 15 ~~k~~~L~~~l~~~~--~-----------------------------~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~ 63 (200)
T d1oywa3 15 FKPLDQLMRYVQEQR--G-----------------------------KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAG 63 (200)
T ss_dssp SSHHHHHHHHHHHTT--T-----------------------------CCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CcHHHHHHHHHHhcC--C-----------------------------CCEEEEEeeehhhHHhhhhhccCCceeEEecCC
Confidence 458999998887642 2 289999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccE
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 919 (972)
++.++|.++++.|+.+ ++.||+ +|.++|.|+|+..+++||+||+|||+....|++||++|.|+....
T Consensus 64 ~~~~~r~~~~~~f~~g-~~~ilv-aTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~a 130 (200)
T d1oywa3 64 LENNVRADVQEKFQRD-DLQIVV-ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 130 (200)
T ss_dssp SCHHHHHHHHHHHHTT-SCSEEE-ECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred CcHHHHHHHHHHHhcc-cceEEE-ecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceE
Confidence 9999999999999976 777765 559999999999999999999999999999999999999976543
No 15
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.44 E-value=1.2e-13 Score=148.69 Aligned_cols=107 Identities=20% Similarity=0.115 Sum_probs=76.4
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCC
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (972)
..+.||+||+.|+.+++.. +.|||+..+|.|||+++.+++......
T Consensus 110 ~~~~~rdyQ~~av~~~l~~-------~~~il~~pTGsGKT~i~~~i~~~~~~~--------------------------- 155 (282)
T d1rifa_ 110 KRIEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLEN--------------------------- 155 (282)
T ss_dssp EECCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHH---------------------------
T ss_pred CccccchHHHHHHHHHHhc-------CCceeEEEcccCccHHHHHHHHHhhhc---------------------------
Confidence 3678999999999999853 337999999999999988777543221
Q ss_pred CCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhh
Q 002077 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (972)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~ 429 (972)
..+++|||||. +|+.||.++|.++.... ...+...++.. ......
T Consensus 156 --------------------------------~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~-~~~~~~~~~g~-~~~~~~ 201 (282)
T d1rifa_ 156 --------------------------------YEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGA-SKDDKY 201 (282)
T ss_dssp --------------------------------CSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTC-SSTTCC
T ss_pred --------------------------------ccceEEEEEcCchhHHHHHHHHHHhhccc-cccceeeccee-cccccc
Confidence 12459999995 79999999999986543 23333333322 222333
Q ss_pred hcCCCEEEEchhhhhc
Q 002077 430 LAKYDVVLTTYSIVTN 445 (972)
Q Consensus 430 l~~~DVVItTY~~l~~ 445 (972)
....+++|+|++.+.+
T Consensus 202 ~~~~~i~i~t~qs~~~ 217 (282)
T d1rifa_ 202 KNDAPVVVGTWQTVVK 217 (282)
T ss_dssp CTTCSEEEECHHHHTT
T ss_pred cccceEEEEeeehhhh
Confidence 4568999999998764
No 16
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.41 E-value=2.1e-12 Score=129.31 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=99.8
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
.++++.+++.+.+..+.+. ++|||+......+.+...|+..|+++..++|.
T Consensus 14 ~~qvd~ll~~i~~~~~~~~-----------------------------~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~ 64 (181)
T d1t5la2 14 KGQIDDLIGEIRERVERNE-----------------------------RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSE 64 (181)
T ss_dssp TTHHHHHHHHHHHHHHTTC-----------------------------EEEEECSSHHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CCcHHHHHHHHHHHHhcCC-----------------------------eEEEEeehhhhhHHHHHHHHhCCcceeEecCC
Confidence 4567778887777666655 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCC-----CCChHHHHhHhhcccCCc
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-----NPTTEDQAVDRAHRIGQT 916 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~W-----Np~~e~QAigRi~RiGQ~ 916 (972)
|++.+|.+++++|+++ ++.||+ ++.++++|||...+++||+||++- ++....||+||++|.|+.
T Consensus 65 ~~~~eR~~~l~~Fr~g-~~~vLV-aTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 65 IKTLERIEIIRDLRLG-KYDVLV-GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp CCHHHHHHHHHHHHHT-SCSEEE-ESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred ccHHHHHHHHHHHHCC-CCCEEE-ehhHHHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 9999999999999987 777776 559999999999999999999994 445556888888888764
No 17
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.40 E-value=2.4e-13 Score=137.92 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=78.7
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCC
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 352 (972)
+.+|+||++++.++..+ .+|++.++|.|||++++.++.....
T Consensus 8 ~~pr~~Q~~~~~~~~~~--------n~lv~~pTGsGKT~i~~~~~~~~~~------------------------------ 49 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT------------------------------ 49 (200)
T ss_dssp HCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH------------------------------
T ss_pred CCCCHHHHHHHHHHhcC--------CeEEEeCCCCcHHHHHHHHHHHHHH------------------------------
Confidence 46899999999998622 2699999999999987766643221
Q ss_pred cccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCCh-hhh
Q 002077 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VEL 430 (972)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~-~~l 430 (972)
...+.+|||||. +|+.||.+++.+++... ..++..+++....... ..+
T Consensus 50 -----------------------------~~~~~il~i~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 99 (200)
T d1wp9a1 50 -----------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIVALTGEKSPEERSKAW 99 (200)
T ss_dssp -----------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEEEECSCSCHHHHHHHH
T ss_pred -----------------------------hcCCcEEEEcCchHHHHHHHHHHHHhhccc-ccceeeeecccchhHHHHhh
Confidence 112459999995 78999999999998654 6777777775443322 335
Q ss_pred cCCCEEEEchhhhhcc
Q 002077 431 AKYDVVLTTYSIVTNE 446 (972)
Q Consensus 431 ~~~DVVItTY~~l~~e 446 (972)
..++++++|+..+.+.
T Consensus 100 ~~~~i~i~t~~~~~~~ 115 (200)
T d1wp9a1 100 ARAKVIVATPQTIEND 115 (200)
T ss_dssp HHCSEEEECHHHHHHH
T ss_pred hcccccccccchhHHH
Confidence 6789999999998764
No 18
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.38 E-value=1.9e-12 Score=128.03 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCC
Q 002077 772 SKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTM 851 (972)
Q Consensus 772 sKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~ 851 (972)
..++.|++.+++..+.+. ++||||....+.+.|...|.++||+...++|.|
T Consensus 15 ~qv~dll~~i~~~~~~g~-----------------------------r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~ 65 (174)
T d1c4oa2 15 NQILDLMEGIRERAARGE-----------------------------RTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 65 (174)
T ss_dssp THHHHHHHHHHHHHHTTC-----------------------------EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred CCHHHHHHHHHHHHhcCC-----------------------------cEEEEEcchhHHHHHHHHHHhcCCceEEEeccc
Confidence 356667777777666666 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCC-----CChHHHHhHhhcccCC
Q 002077 852 SLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWN-----PTTEDQAVDRAHRIGQ 915 (972)
Q Consensus 852 s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WN-----p~~e~QAigRi~RiGQ 915 (972)
+..+|++++++|.++ ++.||+ ++.++++|+|...+++||+||++-. +....|++||+.|-|.
T Consensus 66 ~~~eR~~~l~~F~~G-~~~vLV-aT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~ 132 (174)
T d1c4oa2 66 DAFKRQALIRDLRLG-HYDCLV-GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR 132 (174)
T ss_dssp CHHHHHHHHHHHHTT-SCSEEE-ESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT
T ss_pred chHHHHHHHHHHHCC-CeEEEE-eeeeeeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC
Confidence 999999999999986 777666 6699999999999999999998752 2446899999999775
No 19
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=99.17 E-value=2.7e-11 Score=130.24 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=72.8
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEE------
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI------ 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI------ 892 (972)
++|||+......+.+...|++.|+.+..++|.+.... ...|.++ ...+ |+++.+.+.|+|+ .+.+||
T Consensus 180 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~----~~~~~~~-~~~~-lvaT~~~~~G~~~-~~~~Vi~~~~~~ 252 (305)
T d2bmfa2 180 KTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSE----YIKTRTN-DWDF-VVTTDISEMGANF-KAERVIDPRRCM 252 (305)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHH----GGGGGTS-CCSE-EEECGGGGTTCCC-CCSEEEECCEEE
T ss_pred CEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHH----Hhhhhcc-chhh-hhhhHHHHhcCCC-CccEEEEcCCce
Confidence 8999999999999999999999999999999985443 3456654 4444 5567999999999 566654
Q ss_pred ----EecCC----------CCCChHHHHhHhhcccCCccc
Q 002077 893 ----LLDLW----------WNPTTEDQAVDRAHRIGQTRP 918 (972)
Q Consensus 893 ----~~Dp~----------WNp~~e~QAigRi~RiGQ~k~ 918 (972)
++|++ -+++...|++||++|-|+...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~ 292 (305)
T d2bmfa2 253 KPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292 (305)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCC
T ss_pred eeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCce
Confidence 33433 345567899999999998774
No 20
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.06 E-value=1.5e-10 Score=117.47 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=74.5
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|+|||.+++.++++ .+.+||+..+|.|||..++..++....
T Consensus 25 ~l~~~Q~~ai~~l~~-------~~~~il~apTGsGKT~~a~l~i~~~~~------------------------------- 66 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFS-------GKNLLLAMPTAAGKTLLAEMAMVREAI------------------------------- 66 (202)
T ss_dssp CCCCCCHHHHHHHTT-------CSCEEEECSSHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCHHHHHHHHHHHc-------CCCEEEEcCCCCchhHHHHHHHHHHhh-------------------------------
Confidence 599999999998873 234799999999999887555542111
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcC
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~ 432 (972)
..+.+|+|||. .|+.||.+++.++.+. ..++.++.|..... ...+..
T Consensus 67 -----------------------------~~~~vl~l~P~~~L~~q~~~~~~~~~~~--~~~v~~~~~~~~~~-~~~~~~ 114 (202)
T d2p6ra3 67 -----------------------------KGGKSLYVVPLRALAGEKYESFKKWEKI--GLRIGISTGDYESR-DEHLGD 114 (202)
T ss_dssp -----------------------------TTCCEEEEESSHHHHHHHHHHHTTTTTT--TCCEEEECSSCBCC-SSCSTT
T ss_pred -----------------------------ccCcceeecccHHHHHHHHHHHHHHhhc--cccceeeccCcccc-cccccc
Confidence 11358999995 5899999999998765 45666666544322 344567
Q ss_pred CCEEEEchhhhhc
Q 002077 433 YDVVLTTYSIVTN 445 (972)
Q Consensus 433 ~DVVItTY~~l~~ 445 (972)
++|+++++..+..
T Consensus 115 ~~ii~~~~~~~~~ 127 (202)
T d2p6ra3 115 CDIIVTTSEKADS 127 (202)
T ss_dssp CSEEEEEHHHHHH
T ss_pred cceeeeccHHHHH
Confidence 8999999888865
No 21
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.91 E-value=5.5e-11 Score=124.99 Aligned_cols=88 Identities=9% Similarity=0.118 Sum_probs=75.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEec---CccccccCCCC-CCEEEEe
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL---KAGNLGLNMVA-ASHVILL 894 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSl---kagg~GLNLt~-A~~VI~~ 894 (972)
+.|||++...+++.|...|... ++|.++..+|.+++++|..+ ++.||+.+. ..+++|||++. +++||+|
T Consensus 27 ~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g-~~~vLVaT~a~~~v~~rGlDip~~v~~VI~~ 99 (248)
T d1gkub2 27 GGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEG-EIDHLIGTAHYYGTLVRGLDLPERIRFAVFV 99 (248)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHT-SCSEEEEECC------CCSCCTTTCCEEEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhC-CCeEEEEeccccchhhhccCccccccEEEEe
Confidence 8999999999999999999864 78999999999999999976 788888775 56789999985 8999999
Q ss_pred cCCCCCChHHHHhHhhcccCCcc
Q 002077 895 DLWWNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 895 Dp~WNp~~e~QAigRi~RiGQ~k 917 (972)
|+||++ |++||++|.|+.-
T Consensus 100 d~P~~~----~r~gR~~R~g~~~ 118 (248)
T d1gkub2 100 GCPSFR----VTIEDIDSLSPQM 118 (248)
T ss_dssp SCCEEE----EECSCGGGSCHHH
T ss_pred CCCcch----hhhhhhhccCcce
Confidence 999966 7789999998753
No 22
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.90 E-value=8.7e-10 Score=105.00 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=80.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEec---
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD--- 895 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~D--- 895 (972)
|+||||......+.|...|.+.|++...++|.++.++ |+++ ...| |+++.+++.|+| ...+.||++|
T Consensus 37 k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~~~-~~~v-lvaTd~~~~GiD-~~v~~Vi~~~~~~ 106 (138)
T d1jr6a_ 37 RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IPTN-GDVV-VVATDALMTGFT-GDFDSVIDCNTSD 106 (138)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CTTS-SCEE-EEESSSSCSSSC-CCBSEEEECSEET
T ss_pred CEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhh-------hhhh-hcce-eehhHHHHhccc-cccceEEEEEecC
Confidence 9999999999999999999999999999999998544 5543 5555 456699999999 8899998865
Q ss_pred -CCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 896 -LWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 896 -p~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
+++++....|++||+.| |+.- +|.|++++
T Consensus 107 ~~P~~~~~y~qr~GR~gR-g~~G---~~~~i~~~ 136 (138)
T d1jr6a_ 107 GKPQDAVSRTQRRGRTGR-GKPG---IYRFVAPG 136 (138)
T ss_dssp TEECCHHHHHHHHTTBCS-SSCE---EEEECCSS
T ss_pred CCCCCHHHHHhHhccccC-CCCc---EEEEEcCC
Confidence 57788889999999999 8766 36677664
No 23
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.88 E-value=2.5e-09 Score=111.03 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=69.5
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.++++|+.++.-++. ++-.++.-.+|.|||+.++..++...
T Consensus 43 ~p~~~Q~~~i~~~l~-------g~~~~i~apTGsGKT~~~~~~~~~~~-------------------------------- 83 (237)
T d1gkub1 43 EPRAIQKMWAKRILR-------KESFAATAPTGVGKTSFGLAMSLFLA-------------------------------- 83 (237)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEECCCCBTSCSHHHHHHHHHHHH--------------------------------
T ss_pred CCCHHHHHHHHHHHC-------CCCEEEEecCCChHHHHHHHHHHHHH--------------------------------
Confidence 468999999988773 23368888999999987665554321
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCC---CCeEEEEEeCCCCCCCh--
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDK---AALSVLIYHGGSRTKDP-- 427 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~---~~l~vlvy~G~~r~~~~-- 427 (972)
...+.+|||+|. .|+.||.+++.+++... ....+..+++.......
T Consensus 84 ----------------------------~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (237)
T d1gkub1 84 ----------------------------LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKEN 135 (237)
T ss_dssp ----------------------------TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHH
T ss_pred ----------------------------HhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhh
Confidence 112459999995 69999999999886431 11223333443322211
Q ss_pred --hhhcCCCEEEEchhhhhc
Q 002077 428 --VELAKYDVVLTTYSIVTN 445 (972)
Q Consensus 428 --~~l~~~DVVItTY~~l~~ 445 (972)
.....+||+|+|++.+.+
T Consensus 136 ~l~~~~~~~Ilv~Tp~~l~~ 155 (237)
T d1gkub1 136 FMQNLRNFKIVITTTQFLSK 155 (237)
T ss_dssp HHHSGGGCSEEEEEHHHHHH
T ss_pred hhccccccceeccChHHHHH
Confidence 123568999999988765
No 24
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.81 E-value=5.7e-09 Score=98.57 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=33.9
Q ss_pred CceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhhc
Q 002077 385 AGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445 (972)
Q Consensus 385 ~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~ 445 (972)
..+||+||. .|..||.+++.+++.. .....+.|.. ......++++++..+..
T Consensus 34 ~~vli~~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 86 (136)
T d1a1va1 34 YKVLVLNPSVAATLGFGAYMSKAHGV---DPNIRTGVRT------ITTGSPITYSTYGKFLA 86 (136)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSSCE------ECCCCSEEEEEHHHHHH
T ss_pred CcEEEEcChHHHHHHHHHHHHHHhhc---cccccccccc------cccccceEEEeeeeecc
Confidence 349999996 5789999999998753 2222332221 12335678888877654
No 25
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.70 E-value=1.2e-08 Score=103.30 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=68.0
Q ss_pred EEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEE-------ecCCCCCChHHHHhHhhcccCCc
Q 002077 844 YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL-------LDLWWNPTTEDQAVDRAHRIGQT 916 (972)
Q Consensus 844 ~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~-------~Dp~WNp~~e~QAigRi~RiGQ~ 916 (972)
+..++|.|+..+|..+.+.|+++ .++||+.+ .+.+.|+|+.+.+.||+ .+.+.+++...|++||++|.|+.
T Consensus 97 Ia~hh~~l~~~~r~~ie~~f~~g-~i~vlvaT-~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~ 174 (201)
T d2p6ra4 97 AAFHHAGLLNGQRRVVEDAFRRG-NIKVVVAT-PTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD 174 (201)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTT-SCCEEEEC-STTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC
T ss_pred HHHHHHHhhhhhHHHHHHHHhCC-CceEEEec-hHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCC
Confidence 35679999999999999999975 78887755 99999999997777775 44557888999999999999997
Q ss_pred ccEEEEEEecCC
Q 002077 917 RPVTVTRLTIRD 928 (972)
Q Consensus 917 k~V~V~rli~~d 928 (972)
..-.++.++.+.
T Consensus 175 ~~G~~~l~~~~~ 186 (201)
T d2p6ra4 175 ERGEAIIIVGKR 186 (201)
T ss_dssp SCEEEEEECCGG
T ss_pred CeeEEEEEeCCC
Confidence 776666665554
No 26
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=98.63 E-value=2.9e-08 Score=92.80 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=18.1
Q ss_pred CceeecCCCChhHHHHHHHHHh
Q 002077 298 GGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 298 GGILADdmGLGKTiqaIali~~ 319 (972)
-.||..++|.|||++++..+..
T Consensus 9 ~~il~~~tGsGKT~~~~~~~~~ 30 (140)
T d1yksa1 9 TTVLDFHPGAGKTRRFLPQILA 30 (140)
T ss_dssp EEEECCCTTSSTTTTHHHHHHH
T ss_pred cEEEEcCCCCChhHHHHHHHHH
Confidence 3699999999999998866653
No 27
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.59 E-value=1.8e-08 Score=105.96 Aligned_cols=104 Identities=12% Similarity=0.124 Sum_probs=84.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHH----------HHHHHhhhcCCCeeEEEEecCc---cccccCC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPAR----------DRAVKDFNTDREITVMLMSLKA---GNLGLNM 885 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R----------~~~I~~F~~~~~~~VlLiSlka---gg~GLNL 885 (972)
|+|||++.....+.|...|++.|++...++|.++.+.| .++++.|..+ +..+++.+ .+ |..|+++
T Consensus 38 k~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G-~~dvVVaT-~~~a~g~~giDi 115 (299)
T d1a1va2 38 RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTG-DFDSVIDC-NTCVTQTVDFSL 115 (299)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCC-CBSEEEEC-CEEEEEEEECCC
T ss_pred CEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcC-CCcEEEEE-eehhccCCCCCC
Confidence 99999999999999999999999999999999998876 4678888865 67777655 44 4448889
Q ss_pred CCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCC
Q 002077 886 VAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 928 (972)
Q Consensus 886 t~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~d 928 (972)
....+||++|.+.|+....||+||++| |..- +|+++...
T Consensus 116 d~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G---~~~~l~~~ 154 (299)
T d1a1va2 116 DPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG---IYRFVAPG 154 (299)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE---EEEESCSC
T ss_pred CcceEEEeCCCCCCHHHHHhhccccCC-CCCc---eEEEEecC
Confidence 999999999999999999999999999 7443 34455444
No 28
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.57 E-value=7.6e-09 Score=104.81 Aligned_cols=119 Identities=13% Similarity=0.210 Sum_probs=90.2
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchH---------HHHHHHHHHHhC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTR---------MLDLVENSLNQH 840 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~---------~ld~L~~~L~~~ 840 (972)
...|++.+.+.|++.+..+. ++-|+|.... ..+..+..++..
T Consensus 11 ~~~~~~~v~~~I~~el~~g~-----------------------------QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~ 61 (206)
T d1gm5a4 11 PMDRVNEVYEFVRQEVMRGG-----------------------------QAFIVYPLIEESDKLNVKSAVEMYEYLSKEV 61 (206)
T ss_dssp CSSTHHHHHHHHHHHTTTSC-----------------------------CBCCBCCCC--------CHHHHHHHSGGGSC
T ss_pred CcccHHHHHHHHHHHHHcCC-----------------------------CEEEEEeeecccccccchhhHHHHHHHHHhc
Confidence 34578888999998888776 5544444332 222222222322
Q ss_pred --CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCC-CCCChHHHHhHhhcccCCcc
Q 002077 841 --CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW-WNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 841 --gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~-WNp~~e~QAigRi~RiGQ~k 917 (972)
++++..++|.|++++|++++++|.++ ++.||+ ||.+..+|+|+++|++||+++++ |..+...|..||++|-|++-
T Consensus 62 ~p~~~v~~lHG~m~~~eke~~m~~F~~g-~~~iLV-aTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~ 139 (206)
T d1gm5a4 62 FPEFKLGLMHGRLSQEEKDRVMLEFAEG-RYDILV-STTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEA 139 (206)
T ss_dssp C---CBCCCCSSSCCSCSHHHHHHHTTT-SSSBCC-CSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTC
T ss_pred CCCCeEEEEeecccHHHHHHHHHHHHCC-CEEEEE-EehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccc
Confidence 66778899999999999999999976 666655 66999999999999999998887 78999999999999999876
Q ss_pred cE
Q 002077 918 PV 919 (972)
Q Consensus 918 ~V 919 (972)
-.
T Consensus 140 ~~ 141 (206)
T d1gm5a4 140 YC 141 (206)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 29
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.46 E-value=3.4e-07 Score=95.82 Aligned_cols=115 Identities=22% Similarity=0.245 Sum_probs=85.1
Q ss_pred ccccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCC
Q 002077 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (972)
Q Consensus 271 ~~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 350 (972)
+...|-+-|+.++.-+...-.+. ...--+|.-|+|.|||+.++..+......
T Consensus 80 LPFeLT~~Q~~ai~ei~~d~~~~-~~m~rLL~GdvGSGKT~Va~~a~~~~~~~--------------------------- 131 (264)
T d1gm5a3 80 LPFKLTNAQKRAHQEIRNDMISE-KPMNRLLQGDVGSGKTVVAQLAILDNYEA--------------------------- 131 (264)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSS-SCCCCEEECCSSSSHHHHHHHHHHHHHHH---------------------------
T ss_pred ccccCCchHHHHHHHHHHHhhcc-CcceeeeeccccccccHHHHHHHHHHHhc---------------------------
Confidence 45679999999998876544332 23345999999999999998888643321
Q ss_pred CCcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChh-
Q 002077 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV- 428 (972)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~- 428 (972)
....+++||+. |..|+...+.++++.- ...+.+++|....+...
T Consensus 132 ---------------------------------g~q~~~m~Pt~~La~Qh~~~~~~~f~~~-~~~v~~l~~~~~~~~r~~ 177 (264)
T d1gm5a3 132 ---------------------------------GFQTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEK 177 (264)
T ss_dssp ---------------------------------TSCEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHH
T ss_pred ---------------------------------ccceeEEeehHhhhHHHHHHHHHhhhhc-cccceeeccccchHHHHH
Confidence 13489999975 6799999999999753 57888999876544322
Q ss_pred ---hh--cCCCEEEEchhhhhccC
Q 002077 429 ---EL--AKYDVVLTTYSIVTNEV 447 (972)
Q Consensus 429 ---~l--~~~DVVItTY~~l~~e~ 447 (972)
.+ .+.+|||-|+..+..++
T Consensus 178 ~~~~~~~g~~~iiIGThsl~~~~~ 201 (264)
T d1gm5a3 178 IKSGLRNGQIDVVIGTHALIQEDV 201 (264)
T ss_dssp HHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHCCCCCEEEeehHHhcCCC
Confidence 22 57899999999987643
No 30
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.45 E-value=6.7e-08 Score=82.51 Aligned_cols=56 Identities=21% Similarity=0.723 Sum_probs=47.0
Q ss_pred HHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 675 LLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 675 ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
+...+......|.||.+.+.++++++|||+||..||..|+......|| .||..+..
T Consensus 15 ~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP--~Cr~~i~~ 70 (79)
T d1fbva4 15 LYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCP--FCRCEIKG 70 (79)
T ss_dssp HHHTTSCCTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCT--TTCCCCCC
T ss_pred HHHhcCCCCCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCC--CCCcCccC
Confidence 334444456789999999999999999999999999999987777899 68888764
No 31
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.40 E-value=4.8e-08 Score=84.50 Aligned_cols=48 Identities=27% Similarity=0.606 Sum_probs=42.5
Q ss_pred cccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 684 AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 684 ~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
..|++|.+.+.+|++++|||+||..||.+|+......|| .||.++...
T Consensus 24 l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP--~Cr~p~~~~ 71 (86)
T d1rmda2 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCP--SCRYPCFPT 71 (86)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCT--TTCCBCCGG
T ss_pred cCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCc--ccCCCCChh
Confidence 569999999999999999999999999999987777899 688776543
No 32
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=98.38 E-value=2.1e-07 Score=93.89 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=65.9
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.|||||.+++.-+++. +-.|+.-..|.|||+.++..+..
T Consensus 25 ~~rp~Q~~ai~~~l~g-------~~vlv~apTGsGKT~~~~~~~~~---------------------------------- 63 (206)
T d1oywa2 25 QFRPGQEEIIDTVLSG-------RDCLVVMPTGGGKSLCYQIPALL---------------------------------- 63 (206)
T ss_dssp SCCTTHHHHHHHHHTT-------CCEEEECSCHHHHHHHHHHHHHH----------------------------------
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEcCCCCCCcchhhhhhhh----------------------------------
Confidence 6899999999988732 33699999999999977555442
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCc-hhHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC------C
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK------D 426 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~------~ 426 (972)
..+.+++|+|. .|+.||.+++..+.. ......+..... .
T Consensus 64 -----------------------------~~~~~~~v~P~~~L~~q~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~ 109 (206)
T d1oywa2 64 -----------------------------LNGLTVVVSPLISLMKDQVDQLQANGV-----AAACLNSTQTREQQLEVMT 109 (206)
T ss_dssp -----------------------------SSSEEEEECSCHHHHHHHHHHHHHTTC-----CEEEECTTSCHHHHHHHHH
T ss_pred -----------------------------ccCceEEeccchhhhhhHHHHHHhhcc-----cccccccccccccchhHHH
Confidence 11358999996 688999999998743 222322221111 1
Q ss_pred hhhhcCCCEEEEchhhhhc
Q 002077 427 PVELAKYDVVLTTYSIVTN 445 (972)
Q Consensus 427 ~~~l~~~DVVItTY~~l~~ 445 (972)
.......+++++|...+..
T Consensus 110 ~~~~~~~~i~~~t~~~~~~ 128 (206)
T d1oywa2 110 GCRTGQIRLLYIAPERLML 128 (206)
T ss_dssp HHHHTCCSEEEECHHHHTS
T ss_pred HHhcCCceEEEEechhhhc
Confidence 1233568899988876643
No 33
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.30 E-value=5.4e-07 Score=91.31 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=74.4
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.+.|.|..++..+++... ..|+.-..|.|||+..+..+......
T Consensus 26 ~pt~iQ~~~ip~~l~g~~------d~iv~a~TGsGKT~~~~l~~~~~~~~------------------------------ 69 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLNDEY------NIVAQARTGSGKTASFAIPLIELVNE------------------------------ 69 (208)
T ss_dssp SCCHHHHHHHHHHHHTCS------EEEEECCSSSSHHHHHHHHHHHHSCS------------------------------
T ss_pred CCCHHHHHHHHHHHcCCC------Ceeeechhcccccceeeccccccccc------------------------------
Confidence 467899999988874321 13666899999999877666532111
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhhhc
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELA 431 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~l~ 431 (972)
......||+||.. |+.|+.+.+.++.... ..++..++|..... +...+.
T Consensus 70 ----------------------------~~~~~~lil~pt~~l~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~l~ 120 (208)
T d1hv8a1 70 ----------------------------NNGIEAIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK 120 (208)
T ss_dssp ----------------------------SSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH
T ss_pred ----------------------------ccCcceEEEeeccccchhhhhhhhhhcccC-CeEEEEeeCCCChHHHHHhcC
Confidence 1122489999975 7899999998876543 67888888865322 334566
Q ss_pred CCCEEEEchhhhhc
Q 002077 432 KYDVVLTTYSIVTN 445 (972)
Q Consensus 432 ~~DVVItTY~~l~~ 445 (972)
..||||+|-+.+..
T Consensus 121 ~~~IlV~TP~~l~~ 134 (208)
T d1hv8a1 121 NANIVVGTPGRILD 134 (208)
T ss_dssp TCSEEEECHHHHHH
T ss_pred CCCEEEEChHHHHH
Confidence 89999999777653
No 34
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=98.29 E-value=2.9e-06 Score=87.03 Aligned_cols=113 Identities=15% Similarity=0.248 Sum_probs=81.6
Q ss_pred cccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCC
Q 002077 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (972)
Q Consensus 272 ~~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 351 (972)
...|-+-|+.++.-+.+.-... ...--+|.-|+|.|||..++..+.....
T Consensus 53 P~~lt~~Q~~~~~~i~~~~~~~-~~~~~LL~GdvGsGKT~V~~~a~~~~~~----------------------------- 102 (233)
T d2eyqa3 53 PFETTPDQAQAINAVLSDMCQP-LAMDRLVCGDVGFGKTEVAMRAAFLAVD----------------------------- 102 (233)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSS-SCCEEEEECCCCTTTHHHHHHHHHHHHT-----------------------------
T ss_pred ccccchhHHHHHHHHHHHHhcc-CccCeEEEcCCCCCcHHHHHHHHHHHHH-----------------------------
Confidence 4578889999988776543322 1233499999999999999888864321
Q ss_pred CcccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCChh--
Q 002077 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV-- 428 (972)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~-- 428 (972)
..+..+|++|.- |..|+.+.|.++++.- ..+|.+++|........
T Consensus 103 -------------------------------~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~ 150 (233)
T d2eyqa3 103 -------------------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQI 150 (233)
T ss_dssp -------------------------------TTCEEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHH
T ss_pred -------------------------------cCCceEEEccHHHhHHHHHHHHHHHHhhC-CCEEEeccCcccchhHHHH
Confidence 124589999975 6799999999988753 67888888876443222
Q ss_pred --hh--cCCCEEEEchhhhhcc
Q 002077 429 --EL--AKYDVVLTTYSIVTNE 446 (972)
Q Consensus 429 --~l--~~~DVVItTY~~l~~e 446 (972)
.+ .+.+|||=|...+...
T Consensus 151 ~~~~~~g~~~iviGths~l~~~ 172 (233)
T d2eyqa3 151 LAEVAEGKIDILIGTHKLLQSD 172 (233)
T ss_dssp HHHHHTTCCSEEEECTHHHHSC
T ss_pred HHHHhCCCCCEEEeehhhhccC
Confidence 22 4789999999888653
No 35
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.27 E-value=3.5e-07 Score=82.07 Aligned_cols=61 Identities=21% Similarity=0.620 Sum_probs=47.1
Q ss_pred hHHHHHHHHhhcccccccccCCCCCCCcccccCCcchhhhhHhhhhcCCC--CCCCCccccccccc
Q 002077 669 RDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDD--NMCPAPRCKEQLGA 732 (972)
Q Consensus 669 ~e~~~~ll~~le~~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~--~~cp~~~Cr~~l~~ 732 (972)
.+.+..++..++ ..-.|+||.+.+..|+.++|||+||..||.+|+.... ..|| .||..+..
T Consensus 8 ~~~~~~~~~~l~-~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP--~Cr~~~~~ 70 (103)
T d1jm7a_ 8 VEEVQNVINAMQ-KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP--LCKNDITK 70 (103)
T ss_dssp HHHHHHHHHHHH-HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCT--TTSCCCCT
T ss_pred HHHHHHHHHhcc-cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCc--CCCCcCCh
Confidence 344455555554 3457999999999999999999999999999986554 4788 68877654
No 36
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.25 E-value=1.7e-07 Score=79.83 Aligned_cols=50 Identities=16% Similarity=0.365 Sum_probs=42.5
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
+...|+||.+.+.+||++.|||.||..||.+|+......|| .|+..+...
T Consensus 7 ~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP--~~~~~l~~~ 56 (78)
T d1t1ha_ 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCP--KSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCT--TTCCBCSSC
T ss_pred ccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCC--cccccCCcc
Confidence 35679999999999999999999999999999987777888 466665543
No 37
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.19 E-value=1.7e-07 Score=80.23 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=42.6
Q ss_pred cccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
+...|+||.+.+.+||+++|||+||..||.+|+......|| .|+..+..+
T Consensus 6 ~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP--~c~~~l~~~ 55 (80)
T d2c2la2 6 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNP--VTRSPLTQE 55 (80)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCT--TTCCCCCGG
T ss_pred ccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCC--Ccccccccc
Confidence 35679999999999999999999999999999987777888 566666543
No 38
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=98.16 E-value=3.3e-06 Score=84.55 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=85.1
Q ss_pred eEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 819 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~--gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
+|-+.|.-...++-+...|.+. ++++..++|.|+.+++++++.+|.++ ++.||+ +|....+|+|+..|+.+|+.+.
T Consensus 33 Qvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g-~~~ILv-~TtvIEvGiDvpnA~~iiI~~a 110 (211)
T d2eyqa5 33 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLV-CTTIIETGIDIPTANTIIIERA 110 (211)
T ss_dssp EEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-SCCEEE-ESSTTGGGSCCTTEEEEEETTT
T ss_pred eEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcC-CcceEE-EehhhhhccCCCCCcEEEEecc
Confidence 9999999888888888888764 78899999999999999999999976 777766 5599999999999999999988
Q ss_pred C-CCCChHHHHhHhhcccCCcc
Q 002077 897 W-WNPTTEDQAVDRAHRIGQTR 917 (972)
Q Consensus 897 ~-WNp~~e~QAigRi~RiGQ~k 917 (972)
. |--+...|--||++|=+..-
T Consensus 111 ~rfGLaQLhQLRGRVGR~~~~s 132 (211)
T d2eyqa5 111 DHFGLAQLHQLRGRVGRSHHQA 132 (211)
T ss_dssp TSSCHHHHHHHHTTCCBTTBCE
T ss_pred hhccccccccccceeeecCccc
Confidence 7 77889999999999977653
No 39
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.07 E-value=4.8e-07 Score=71.75 Aligned_cols=48 Identities=17% Similarity=0.391 Sum_probs=40.6
Q ss_pred ccccCCCCCCCcccc-cCCcchhhhhHhhhhcCCCCCCCCcccccccccccc
Q 002077 685 ICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 735 (972)
Q Consensus 685 ~C~iC~d~~~~~vit-~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~~~ 735 (972)
.|+||.+.+.+||++ .|||+||.+||.+|+... ..|| .|+.++..+.+
T Consensus 2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-~~CP--~c~~~l~~~dL 50 (56)
T d2baya1 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDP--ITNEPLSIEEI 50 (56)
T ss_dssp CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCT--TTCCBCCGGGC
T ss_pred CCccCCchHHhcCccCCCCCcccHHHHHHHHhhc-cCCC--ccCCcCCHHhc
Confidence 699999999999987 699999999999999753 4788 48888776543
No 40
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.00 E-value=1.4e-05 Score=80.89 Aligned_cols=108 Identities=18% Similarity=0.125 Sum_probs=68.5
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.+.|.|..++.-++. ++--++.-..|-|||+..+.-+......
T Consensus 32 ~pt~iQ~~aip~il~-------g~dvl~~a~TGsGKT~a~~lp~i~~l~~------------------------------ 74 (212)
T d1qdea_ 32 EPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDT------------------------------ 74 (212)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHHc-------CCCEEeecccccchhhhhHhhhHhhhhc------------------------------
Confidence 588999999998883 2336899999999998766555432110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCC-CCCCChhhhc
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGG-SRTKDPVELA 431 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~-~r~~~~~~l~ 431 (972)
....-..||+||+. ++.|=..++..+.... .+.+....+. ....+...+.
T Consensus 75 ---------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 126 (212)
T d1qdea_ 75 ---------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR 126 (212)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CT
T ss_pred ---------------------------cCCCcceEEEcccHHHhhhhhhhhccccccc-ccceeeEeeccchhHHHHHhc
Confidence 01112489999976 6777777777665433 4555555544 3334455567
Q ss_pred CCCEEEEchhhhhcc
Q 002077 432 KYDVVLTTYSIVTNE 446 (972)
Q Consensus 432 ~~DVVItTY~~l~~e 446 (972)
..||+|+|.+.+.+.
T Consensus 127 ~~~IvI~TP~~l~~~ 141 (212)
T d1qdea_ 127 DAQIVVGTPGRVFDN 141 (212)
T ss_dssp TCSEEEECHHHHHHH
T ss_pred CCcEEEECCCccccc
Confidence 889999998888653
No 41
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.97 E-value=1.6e-05 Score=80.83 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=71.7
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.+.|.|..++-.++.. +.-+++-..|.|||+..+.-++.....
T Consensus 34 ~pt~iQ~~aip~il~g-------~dvl~~a~TGsGKTlayllp~l~~i~~------------------------------ 76 (218)
T d2g9na1 34 KPSAIQQRAILPCIKG-------YDVIAQAQSGTGKTATFAISILQQIEL------------------------------ 76 (218)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEECCTTSSHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEcccchhhhhhhhhhhhheecc------------------------------
Confidence 4789999999998833 335889999999999876555532110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCC-CC--hhh
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRT-KD--PVE 429 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~-~~--~~~ 429 (972)
.......||+||+. |..|=.+++.++.... .+.+....+.... .. ...
T Consensus 77 ---------------------------~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 128 (218)
T d2g9na1 77 ---------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQ 128 (218)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHHTTT-TCCEEEECC--CCCSTTTSSS
T ss_pred ---------------------------cccCccEEEEcccchhhhhHHHHHhhhcccc-ceeEEeeecccchhHHHHHHh
Confidence 01122489999976 7788888888876544 4555555554322 22 222
Q ss_pred hcCCCEEEEchhhhhcc
Q 002077 430 LAKYDVVLTTYSIVTNE 446 (972)
Q Consensus 430 l~~~DVVItTY~~l~~e 446 (972)
....||||+|-..+...
T Consensus 129 ~~~~~IvV~TP~rl~~~ 145 (218)
T d2g9na1 129 MEAPHIIVGTPGRVFDM 145 (218)
T ss_dssp SCCCSEEEECHHHHHHH
T ss_pred cCCCEEEEeCChhHHHH
Confidence 34689999999877653
No 42
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.94 E-value=1.6e-05 Score=80.12 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=74.5
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.+.|.|..++-.+++ ++-.|+.-..|.|||+..+.-+......
T Consensus 23 ~pt~iQ~~aip~il~-------g~dvl~~A~TGsGKTla~~lp~l~~~~~------------------------------ 65 (207)
T d1t6na_ 23 HPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQLEP------------------------------ 65 (207)
T ss_dssp CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCC------------------------------
T ss_pred CCCHHHHHHHHHHHc-------CCCeEEEeccccccccccccceeeeecc------------------------------
Confidence 488999999999883 2446999999999998766555432110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhhh-
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVEL- 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~l- 430 (972)
....-..||+||.. |..|..+.+..+......+++.+..|..... ....+
T Consensus 66 ---------------------------~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 118 (207)
T d1t6na_ 66 ---------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 118 (207)
T ss_dssp ---------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH
T ss_pred ---------------------------cCCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHH
Confidence 01112489999975 7888888888877644356666666654322 22233
Q ss_pred -cCCCEEEEchhhhhcc
Q 002077 431 -AKYDVVLTTYSIVTNE 446 (972)
Q Consensus 431 -~~~DVVItTY~~l~~e 446 (972)
...||+|+|.+.+...
T Consensus 119 ~~~~~ilI~TP~rl~~~ 135 (207)
T d1t6na_ 119 KNCPHIVVGTPGRILAL 135 (207)
T ss_dssp HSCCSEEEECHHHHHHH
T ss_pred hcCCCEEEeCcchhhhh
Confidence 4579999999988653
No 43
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.91 E-value=1.1e-06 Score=71.89 Aligned_cols=49 Identities=24% Similarity=0.640 Sum_probs=38.7
Q ss_pred ccccccCCCCC----C-CcccccCCcchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 683 SAICCVCSDPP----E-DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 683 ~~~C~iC~d~~----~-~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
...|+||++.+ . ..++++|||+||..||..|+......|| .||..+...
T Consensus 3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP--~CR~~i~~~ 56 (65)
T d1g25a_ 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCP--ECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCT--TTCCCCSSC
T ss_pred CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCC--CCCcCcccc
Confidence 46899998753 2 2367799999999999999977667788 788887654
No 44
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=97.90 E-value=2.2e-06 Score=70.66 Aligned_cols=47 Identities=30% Similarity=0.818 Sum_probs=38.6
Q ss_pred cccccccCCCCCCCc-ccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~-vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
...+|+||++.+..+ ++++|||+||..|+..|+.. ...|| .||..+.
T Consensus 4 ~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP--~CR~~i~ 51 (68)
T d1chca_ 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCP--LCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTT--TTCCCCC
T ss_pred CCCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCC--CCCcchH
Confidence 456799999998765 55899999999999999975 46788 6888764
No 45
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.88 E-value=2.2e-05 Score=79.01 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=72.3
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.+.|-|..++-.+++ ++-.|+.-..|.|||+..+.-++.....
T Consensus 25 ~pt~iQ~~aip~il~-------g~dvl~~a~TGsGKTlayllP~l~~~~~------------------------------ 67 (206)
T d1veca_ 25 KPSPIQEESIPIALS-------GRDILARAKNGTGKSGAYLIPLLERLDL------------------------------ 67 (206)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCSSSTTHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHHc-------CCCEEeeccCccccccccccchhhcccc------------------------------
Confidence 478999999999882 3446999999999998766655532111
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCC-hhhh-
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVEL- 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~-~~~l- 430 (972)
....-..||+||.. +..|=.+++.++......+.+....|...... ...+
T Consensus 68 ---------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 120 (206)
T d1veca_ 68 ---------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 120 (206)
T ss_dssp ---------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT
T ss_pred ---------------------------cccCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHH
Confidence 01122489999986 66777777776654433566666666543322 2222
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
...||||+|.+.+..
T Consensus 121 ~~~~ivv~TPgrl~~ 135 (206)
T d1veca_ 121 DTVHVVIATPGRILD 135 (206)
T ss_dssp SCCSEEEECHHHHHH
T ss_pred hccCeEEeCCccccc
Confidence 468999999888754
No 46
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=97.84 E-value=5.8e-05 Score=73.01 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 002077 771 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 850 (972)
Q Consensus 771 SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs 850 (972)
..|++++++.+.+..+.+. .|||++......+.|...|.+.||++..+...
T Consensus 17 ~eK~~AIi~eV~~~~~~gr-----------------------------PVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk 67 (175)
T d1tf5a4 17 EGKFKAVAEDVAQRYMTGQ-----------------------------PVLVGTVAVETSELISKLLKNKGIPHQVLNAK 67 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----------------------------CEEEEESCHHHHHHHHHHHHTTTCCCEEECSS
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCceeehhh
Confidence 4699999999999888887 89999999999999999999999999999987
Q ss_pred CCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCC--------CCEEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 851 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--------ASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 851 ~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~--------A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
.. +++..|-...- .+..+.++|..+|.|.++.- .=|||.-..+-|...+.|..||+.|.|+.-....|
T Consensus 68 ~~--~~Ea~II~~Ag--~~g~VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~ 143 (175)
T d1tf5a4 68 NH--EREAQIIEEAG--QKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 143 (175)
T ss_dssp CH--HHHHHHHTTTT--STTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred hH--HHHHHHHHhcc--CCCceeehhhHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEE
Confidence 63 33344444332 22234556688899976532 24999999999999999999999999998765443
No 47
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.84 E-value=3.4e-06 Score=65.56 Aligned_cols=46 Identities=26% Similarity=0.653 Sum_probs=37.4
Q ss_pred ccccCCCCCCC----cccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 685 ICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 685 ~C~iC~d~~~~----~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
+|+||++.++. +++++|||.||..|+..|+......|| .||..+..
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP--~CR~~~~~ 51 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCP--ACRKPYPE 51 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCT--TTCCBCSC
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCC--ccCCcCCC
Confidence 69999987643 345689999999999999988778899 68877654
No 48
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.83 E-value=2.6e-06 Score=67.29 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=36.8
Q ss_pred ccccccCCCCCCCcccccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 683 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
..+|+||++.+.+|++++|||+||..|+..+ ...|| .||..+..
T Consensus 6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP--~Cr~~~~~ 49 (56)
T d1bora_ 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCP--ICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCS--SCCSSSSC
T ss_pred CCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCc--CCCCcccC
Confidence 3589999999999999999999999998753 55788 68877654
No 49
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.80 E-value=8.1e-06 Score=72.07 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=37.0
Q ss_pred ccccccCCCCCCCccc-ccCCcchhhhhHhhhhcCCCCCCCCccccccccc
Q 002077 683 SAICCVCSDPPEDSVV-TMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vi-t~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~ 732 (972)
...|+||.+.+.+||. +.|||.||..||.+|+. ..|| .|+..+..
T Consensus 22 ~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP--~Cr~~~~~ 67 (97)
T d1jm7b_ 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCP--VCYTPAWI 67 (97)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCS--SSCCBCSC
T ss_pred cCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---cccc--ccCCcCch
Confidence 4579999999999986 58999999999999984 3588 57766543
No 50
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=97.78 E-value=3.6e-05 Score=79.17 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=77.8
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.+.|.|..++-.+++ .+..++.-..|-|||+.-+.-++....... .. .
T Consensus 43 ~pt~iQ~~~ip~il~-------g~dvvi~a~TGsGKTlayllp~l~~l~~~~--------------------~~---~-- 90 (238)
T d1wrba1 43 RPTPIQKNAIPAILE-------HRDIMACAQTGSGKTAAFLIPIINHLVCQD--------------------LN---Q-- 90 (238)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHTTC--------------------C-------
T ss_pred CCCHHHHHHhhhhhC-------CCCEEEECCCCCCcceeeHHHHHHHHHhcc--------------------cc---c--
Confidence 588999999999883 244699999999999987666654221100 00 0
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCCCh--hhh
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--VEL 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~--~~l 430 (972)
........-..||+||.. |+.|+.+++...... ..+++.+..|....... ...
T Consensus 91 -----------------------~~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~ 146 (238)
T d1wrba1 91 -----------------------QRYSKTAYPKCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHSQIREVQ 146 (238)
T ss_dssp ---------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCSHHHHHHHS
T ss_pred -----------------------ccccCCCCceEEEeccchhhhcchheeeeecccC-CCcEEEEEeccchhhHHHhhcc
Confidence 000001122489999975 889999999887543 36888888876544321 233
Q ss_pred cCCCEEEEchhhhhcc
Q 002077 431 AKYDVVLTTYSIVTNE 446 (972)
Q Consensus 431 ~~~DVVItTY~~l~~e 446 (972)
...||||+|...+..-
T Consensus 147 ~~~~ivV~TP~~l~~~ 162 (238)
T d1wrba1 147 MGCHLLVATPGRLVDF 162 (238)
T ss_dssp SCCSEEEECHHHHHHH
T ss_pred cCCceeecCHHHHHhH
Confidence 5689999999988753
No 51
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.73 E-value=4.1e-05 Score=77.85 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=72.9
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.+.|.|..++-++++ ++--+..-..|.|||+..+.-++.....
T Consensus 39 ~pt~IQ~~aIp~il~-------g~dvi~~a~TGSGKTlayllPil~~l~~------------------------------ 81 (222)
T d2j0sa1 39 KPSAIQQRAIKQIIK-------GRDVIAQSQSGTGKTATFSISVLQCLDI------------------------------ 81 (222)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHTCCT------------------------------
T ss_pred CCCHHHHHHHHHHHC-------CCCeEEEcCcchhhhhhhcccccccccc------------------------------
Confidence 477999999999983 2335889999999998776655532110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCch-hHHHHHHHHHhhCCCCCCeEEEEEeCCCCCC-Chhhh-
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVEL- 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~-~~~~l- 430 (972)
....-..||+||+. |..|-.+++.++.. ...+++..+.|..... ....+
T Consensus 82 ---------------------------~~~~~~~lil~PtreLa~Qi~~~~~~l~~-~~~i~~~~~~g~~~~~~~~~~l~ 133 (222)
T d2j0sa1 82 ---------------------------QVRETQALILAPTRELAVQIQKGLLALGD-YMNVQCHACIGGTNVGEDIRKLD 133 (222)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTT-TTTCCEEEECTTSCHHHHHHHHH
T ss_pred ---------------------------cccCceeEEecchHHHHHHHHHHHHHHhC-ccceeEEEEeecccchhhHHHhc
Confidence 01112389999986 66777777777654 3368888887765432 22222
Q ss_pred cCCCEEEEchhhhhc
Q 002077 431 AKYDVVLTTYSIVTN 445 (972)
Q Consensus 431 ~~~DVVItTY~~l~~ 445 (972)
...||||.|.+.+..
T Consensus 134 ~~~~Ilv~TPgrl~~ 148 (222)
T d2j0sa1 134 YGQHVVAGTPGRVFD 148 (222)
T ss_dssp HCCSEEEECHHHHHH
T ss_pred cCCeEEeCCCCcHHh
Confidence 468999999988754
No 52
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=97.69 E-value=1.1e-05 Score=63.32 Aligned_cols=46 Identities=28% Similarity=0.745 Sum_probs=35.8
Q ss_pred cccccccCCCCCCC---c-ccccCCcchhhhhHhhhhcCCCCCCCCccccccc
Q 002077 682 SSAICCVCSDPPED---S-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 730 (972)
Q Consensus 682 ~~~~C~iC~d~~~~---~-vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l 730 (972)
+..+|+||++.... . +++.|||.||..||..|+.. ...|| .||..+
T Consensus 4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP--~CR~~i 53 (55)
T d1iyma_ 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCP--LCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCS--SSCCCS
T ss_pred CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCC--CCCCEe
Confidence 34679999998764 2 23579999999999999975 56788 687654
No 53
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=97.58 E-value=8.6e-05 Score=78.57 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=68.5
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEE------
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI------ 892 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI------ 892 (972)
++|||+.-....+.+...|++.|..+..++|.+..+++++ |.++ +.+| |++|.+.+.|||+ ...+||
T Consensus 38 ~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~~-~~~~-~~~t~~~~~~~~~-~~~~vid~g~~~ 110 (299)
T d1yksa2 38 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQK-KPDF-ILATDIAEMGANL-CVERVLDCRTAF 110 (299)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------C-CCSE-EEESSSTTCCTTC-CCSEEEECCEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh----hhcC-CcCE-EEEechhhhceec-CceEEEecCcee
Confidence 9999999999999999999999999999999998877664 4433 4444 5677999999999 688887
Q ss_pred ---EecC----------CCCCChHHHHhHhhcccCCc
Q 002077 893 ---LLDL----------WWNPTTEDQAVDRAHRIGQT 916 (972)
Q Consensus 893 ---~~Dp----------~WNp~~e~QAigRi~RiGQ~ 916 (972)
.||+ |.+.+...|+.||++|.+-.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~ 147 (299)
T d1yksa2 111 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147 (299)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred ceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCC
Confidence 2333 24555668999999998544
No 54
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.44 E-value=2e-05 Score=69.56 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=39.7
Q ss_pred cccccccCCCCCCCcccccCC-cchhhhhHhhhhcCCCCCCCCcccccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMCG-HVFCYQCASEYITGDDNMCPAPRCKEQLGAD 733 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~Cg-H~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~~~ 733 (972)
....|+||.+.+.+||+++|| |.||..||..|+.. ...||. |+..+..+
T Consensus 21 ~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~--~~~~l~~~ 70 (98)
T d1wgma_ 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPF--NRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTT--TCSBCCTT
T ss_pred HHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCccc--ccccccch
Confidence 357899999999999999876 58999999999964 567884 66666543
No 55
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=97.38 E-value=0.00022 Score=71.13 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=29.9
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHH
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~ 318 (972)
.+.|.|.+++..+++- +-.|+....|.|||+..+.-++
T Consensus 23 ~pt~iQ~~aip~~l~G-------~dvii~a~TGSGKTlayllp~l 60 (209)
T d1q0ua_ 23 KPTEIQERIIPGALRG-------ESMVGQSQTGTGKTHAYLLPIM 60 (209)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEECCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCC-------CCeEeecccccccceeeeeeec
Confidence 4889999999988843 3358999999999986655544
No 56
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.34 E-value=0.00028 Score=70.41 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=67.2
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhccccccchhhhccccccccccCCCCCCCCCCCc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 353 (972)
.+.|-|..++--+++- +.-|+....|.|||+.-+.-+......
T Consensus 23 ~pt~iQ~~aip~il~g-------~dvi~~a~tGsGKTlay~lp~i~~~~~------------------------------ 65 (206)
T d1s2ma1 23 KPSPIQEEAIPVAITG-------RDILARAKNGTGKTAAFVIPTLEKVKP------------------------------ 65 (206)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEECCTTSCHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEecCCcchhhhhhcccccccccc------------------------------
Confidence 4789999999888843 335899999999997654444321110
Q ss_pred ccccccCCCCCCCCCCCcccccccccCCCCCCceEEEcCchh-HHHHHHHHHhhCCCCCCeEEEEEeCCCCCCC-hhhh-
Q 002077 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVEL- 430 (972)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~tLIV~P~sL-l~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~-~~~l- 430 (972)
.......++++|... ..|=........ ....+++...+|...... ...+
T Consensus 66 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~ 117 (206)
T d1s2ma1 66 ---------------------------KLNKIQALIMVPTRELALQTSQVVRTLG-KHCGISCMVTTGGTNLRDDILRLN 117 (206)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCEEEECSSSCHHHHHHHTT
T ss_pred ---------------------------ccccccceeeccchhhhhhhhhhhhhcc-cccCeeEEeecCccchhhHHHHhc
Confidence 011234788888654 444333333322 233788888888654322 1222
Q ss_pred cCCCEEEEchhhhhcc
Q 002077 431 AKYDVVLTTYSIVTNE 446 (972)
Q Consensus 431 ~~~DVVItTY~~l~~e 446 (972)
...||+|+|...+..-
T Consensus 118 ~~~~Ili~TP~~l~~~ 133 (206)
T d1s2ma1 118 ETVHILVGTPGRVLDL 133 (206)
T ss_dssp SCCSEEEECHHHHHHH
T ss_pred ccceEEEECCcccccc
Confidence 5689999999988653
No 57
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.24 E-value=3.8e-05 Score=69.58 Aligned_cols=48 Identities=25% Similarity=0.572 Sum_probs=35.9
Q ss_pred ccccccCCCCCCC------------------cccccCCcchhhhhHhhhhcCC----CCCCCCccccccccc
Q 002077 683 SAICCVCSDPPED------------------SVVTMCGHVFCYQCASEYITGD----DNMCPAPRCKEQLGA 732 (972)
Q Consensus 683 ~~~C~iC~d~~~~------------------~vit~CgH~fC~~Ci~~~~~~~----~~~cp~~~Cr~~l~~ 732 (972)
...|.||++.+.. ..++.|||+||.+||.+|+... ...|| .||..+..
T Consensus 25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP--~CR~~~~~ 94 (114)
T d1v87a_ 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP--SCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCT--TTCCBSSS
T ss_pred cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccc--cccchhcc
Confidence 5679999987532 2457899999999999999643 24688 68876543
No 58
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.62 E-value=0.0005 Score=59.04 Aligned_cols=46 Identities=22% Similarity=0.629 Sum_probs=34.5
Q ss_pred ccccccCCCCCCC------------------cccccCCcchhhhhHhhhhcCCCCCCCCcccccccc
Q 002077 683 SAICCVCSDPPED------------------SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 731 (972)
Q Consensus 683 ~~~C~iC~d~~~~------------------~vit~CgH~fC~~Ci~~~~~~~~~~cp~~~Cr~~l~ 731 (972)
...|+||.+.+.. .++++|||+|+..||..|+... ..|| .||....
T Consensus 21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP--~CR~~~~ 84 (88)
T d3dplr1 21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCP--LDNREWE 84 (88)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCS--SSCSBCC
T ss_pred CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHC-CcCC--CCCCccc
Confidence 4568888765533 3456899999999999999764 5788 6887653
No 59
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.56 E-value=0.00038 Score=60.47 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=36.1
Q ss_pred cccccccCCCCCCC---cccccCCcchhhhhHhhhhcC-----CC--CCCCCcccccc
Q 002077 682 SSAICCVCSDPPED---SVVTMCGHVFCYQCASEYITG-----DD--NMCPAPRCKEQ 729 (972)
Q Consensus 682 ~~~~C~iC~d~~~~---~vit~CgH~fC~~Ci~~~~~~-----~~--~~cp~~~Cr~~ 729 (972)
+...|+||++.... +....|||.||.+|+.+|+.. .. -.||...|+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~ 61 (94)
T d1wima_ 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCCCC
Confidence 56789999987532 455689999999999999852 22 26998788653
No 60
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=96.21 E-value=0.022 Score=55.77 Aligned_cols=132 Identities=11% Similarity=0.104 Sum_probs=103.1
Q ss_pred cchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHhCCCcEEEEeC
Q 002077 770 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 849 (972)
Q Consensus 770 ~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldG 849 (972)
...|+.++++.+.+..+.|. -|||.+.....-+.|...|.+.||++..|..
T Consensus 16 ~~~K~~Avv~ei~~~h~~Gq-----------------------------PVLVGT~SVe~SE~lS~lL~~~gi~h~vLNA 66 (219)
T d1nkta4 16 EEAKYIAVVDDVAERYAKGQ-----------------------------PVLIGTTSVERSEYLSRQFTKRRIPHNVLNA 66 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-----------------------------CEEEEESCHHHHHHHHHHHHHTTCCCEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEeeCcHHHHHHHHHHHHHhccchhccch
Confidence 45799999999999999887 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCC-------------------------------------------
Q 002077 850 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV------------------------------------------- 886 (972)
Q Consensus 850 s~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt------------------------------------------- 886 (972)
... ++-..+|.+=-... .| -++|.-+|.|-+..
T Consensus 67 K~h-erEAeIIAqAG~~G--aV-TIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (219)
T d1nkta4 67 KYH-EQEATIIAVAGRRG--GV-TVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEAS 142 (219)
T ss_dssp SCH-HHHHHHHHTTTSTT--CE-EEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhH-HHHHHHHHhcccCC--cE-EeeccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 853 33344555443322 23 44567778888762
Q ss_pred ---------CCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEEEEecCCCHHHHHHHHHH
Q 002077 887 ---------AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 939 (972)
Q Consensus 887 ---------~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~rli~~dTIEe~Il~lq~ 939 (972)
..=|||--+..=+-....|--||++|.|..-...+|- |+|+.++++-.
T Consensus 143 ~~~~~V~~~GGL~VIGTErHeSrRIDnQLRGRsGRQGDPGsSrFfl-----SLeDdLmr~F~ 199 (219)
T d1nkta4 143 KEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYL-----SLGDELMRRFN 199 (219)
T ss_dssp HHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEE-----ETTSHHHHHTT
T ss_pred HHHHHHHhcCCcEEEeccccccccccccccccccccCCCccceeEE-----eccHHHHHHHC
Confidence 1248999999999999999999999999877654443 67777766543
No 61
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=96.03 E-value=0.0014 Score=51.88 Aligned_cols=48 Identities=17% Similarity=0.455 Sum_probs=37.9
Q ss_pred cccccccCCCCCCCcccccC-----CcchhhhhHhhhhcC-CCCCCCCcccccccc
Q 002077 682 SSAICCVCSDPPEDSVVTMC-----GHVFCYQCASEYITG-DDNMCPAPRCKEQLG 731 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vit~C-----gH~fC~~Ci~~~~~~-~~~~cp~~~Cr~~l~ 731 (972)
+...|.||++....+.+.+| +|.|+..|+..|+.. ....|| .||..+.
T Consensus 5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP--~Cr~~~~ 58 (60)
T d1vyxa_ 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQ--ICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCT--TTCCBCC
T ss_pred CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCc--ccCCeee
Confidence 56789999988877777765 599999999999864 456898 5776653
No 62
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=92.13 E-value=0.13 Score=52.03 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=36.5
Q ss_pred CceEEEcCchhH----HHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhhcc
Q 002077 385 AGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446 (972)
Q Consensus 385 ~~tLIV~P~sLl----~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~e 446 (972)
++.=||...-.| .+|...+-++++ ++|-+.............-..||+-.|-+.+.-+
T Consensus 122 ~~vhvvTvNdyLA~RDae~m~~iy~~lG----lsvg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fD 183 (273)
T d1tf5a3 122 KGVHVVTVNEYLASRDAEQMGKIFEFLG----LTVGLNLNSMSKDEKREAYAADITYSTNNELGFD 183 (273)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTT----CCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHH
T ss_pred CCceEEecCccccchhhhHHhHHHHHcC----CCccccccccCHHHHHHHhhCCceecchhhhhhh
Confidence 345666665544 569999999984 7776655433322334455789987776655443
No 63
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=90.82 E-value=0.19 Score=51.19 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=37.2
Q ss_pred CceEEEcCch-hH---HHHHHHHHhhCCCCCCeEEEEEeCCCCCCChhhhcCCCEEEEchhhhhcc
Q 002077 385 AGTLVVCPAS-VL---RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446 (972)
Q Consensus 385 ~~tLIV~P~s-Ll---~QW~~Ei~k~~~~~~~l~vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~e 446 (972)
++.=||...- |. .+|...+-+++ .++|-+.............-.+||+-.|-..+.-+
T Consensus 139 ~~vhvvTvNdyLA~RDa~~m~~~y~~l----Glsvg~~~~~~~~~~~~~~Y~~di~Y~t~~e~gfD 200 (288)
T d1nkta3 139 NGVHIVTVNDYLAKRDSEWMGRVHRFL----GLQVGVILATMTPDERRVAYNADITYGTNNEFGFD 200 (288)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHT----TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHH
T ss_pred CCeEEEecCchhhhhhHHHHHHHHHHh----CCCcCcccccCChHHHHHHhhcccccccHHHHhhh
Confidence 3456666654 44 56999999998 47777665543333334445789988876665443
No 64
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=84.34 E-value=0.9 Score=48.02 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=28.4
Q ss_pred CchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 275 LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
+-+.|+.|+.-++.. +. .+|.=..|-|||.++..++..
T Consensus 149 ~~~~Q~~A~~~al~~---~~----~vI~G~pGTGKTt~i~~~l~~ 186 (359)
T d1w36d1 149 EINWQKVAAAVALTR---RI----SVISGGPGTGKTTTVAKLLAA 186 (359)
T ss_dssp SCCHHHHHHHHHHTB---SE----EEEECCTTSTHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcC---Ce----EEEEcCCCCCceehHHHHHHH
Confidence 557899999988732 22 477888899999988666543
No 65
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=75.79 E-value=4.6 Score=40.34 Aligned_cols=100 Identities=10% Similarity=0.103 Sum_probs=74.5
Q ss_pred CCcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHH----HHHHHHHHhCC
Q 002077 766 DNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRML----DLVENSLNQHC 841 (972)
Q Consensus 766 ~~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~l----d~L~~~L~~~g 841 (972)
++...|+|-...+..+......|. ++++...-.... ..+...+...|
T Consensus 110 ~GdvGSGKT~Va~~a~~~~~~~g~-----------------------------q~~~m~Pt~~La~Qh~~~~~~~f~~~~ 160 (264)
T d1gm5a3 110 QGDVGSGKTVVAQLAILDNYEAGF-----------------------------QTAFMVPTSILAIQHYRRTVESFSKFN 160 (264)
T ss_dssp ECCSSSSHHHHHHHHHHHHHHHTS-----------------------------CEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred eccccccccHHHHHHHHHHHhccc-----------------------------ceeEEeehHhhhHHHHHHHHHhhhhcc
Confidence 344589999888888877777776 888888865544 44555666669
Q ss_pred CcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecC
Q 002077 842 IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 896 (972)
Q Consensus 842 i~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp 896 (972)
+....++|+++.++|.++....+++ ++.|++.+-.+.-..+-+..-. +|++|-
T Consensus 161 ~~v~~l~~~~~~~~r~~~~~~~~~g-~~~iiIGThsl~~~~~~f~~Lg-lviiDE 213 (264)
T d1gm5a3 161 IHVALLIGATTPSEKEKIKSGLRNG-QIDVVIGTHALIQEDVHFKNLG-LVIIDE 213 (264)
T ss_dssp CCEEECCSSSCHHHHHHHHHHHHSS-CCCEEEECTTHHHHCCCCSCCC-EEEEES
T ss_pred ccceeeccccchHHHHHHHHHHHCC-CCCEEEeehHHhcCCCCccccc-eeeecc
Confidence 9999999999999999999999875 8888888766665556544443 444543
No 66
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=67.64 E-value=9.1 Score=37.34 Aligned_cols=130 Identities=9% Similarity=0.067 Sum_probs=88.1
Q ss_pred CcccchHHHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecchHHHHHHHHHHHh----CCC
Q 002077 767 NEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQ----HCI 842 (972)
Q Consensus 767 ~~~~SsKi~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft~~ld~L~~~L~~----~gi 842 (972)
....|+|-...+..+....+.|. ++++...-+.........+++ .++
T Consensus 83 GdvGsGKT~V~~~a~~~~~~~g~-----------------------------qv~~l~Pt~~La~Q~~~~~~~~~~~~~~ 133 (233)
T d2eyqa3 83 GDVGFGKTEVAMRAAFLAVDNHK-----------------------------QVAVLVPTTLLAQQHYDNFRDRFANWPV 133 (233)
T ss_dssp CCCCTTTHHHHHHHHHHHHTTTC-----------------------------EEEEECSSHHHHHHHHHHHHHHSTTTTC
T ss_pred cCCCCCcHHHHHHHHHHHHHcCC-----------------------------ceEEEccHHHhHHHHHHHHHHHHhhCCC
Confidence 33478999999988888888877 999999988777777776664 588
Q ss_pred cEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCccccccCCCCCCEEEEecCCCCCChHHHHhHhhcccCCcccEEEE
Q 002077 843 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 922 (972)
Q Consensus 843 ~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V~ 922 (972)
.+..++|.++..+|.++.....++ ++.|++.+-.+....+.+..-. +|++|--=.....+...=|.++ ..++|.
T Consensus 134 ~v~~l~~~~~~~~~~~~~~~~~~g-~~~iviGths~l~~~~~f~~Lg-LiIiDEeH~fg~kQ~~~l~~~~----~~~~~l 207 (233)
T d2eyqa3 134 RIEMISRFRSAKEQTQILAEVAEG-KIDILIGTHKLLQSDVKFKDLG-LLIVDEEHRFGVRHKERIKAMR----ANVDIL 207 (233)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTT-CCSEEEECTHHHHSCCCCSSEE-EEEEESGGGSCHHHHHHHHHHH----TTSEEE
T ss_pred EEEeccCcccchhHHHHHHHHhCC-CCCEEEeehhhhccCCcccccc-ceeeechhhhhhHHHHHHHhhC----CCCCEE
Confidence 899999999999999999999976 7788886644444344443333 4555544344443333333332 235555
Q ss_pred EEecCCCHH
Q 002077 923 RLTIRDTVE 931 (972)
Q Consensus 923 rli~~dTIE 931 (972)
.+.+--..+
T Consensus 208 ~~SATPipr 216 (233)
T d2eyqa3 208 TLTATPIPR 216 (233)
T ss_dssp EEESSCCCH
T ss_pred EEecchhHH
Confidence 555444443
No 67
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.99 E-value=1.9 Score=33.74 Aligned_cols=41 Identities=32% Similarity=0.884 Sum_probs=30.7
Q ss_pred ccccccCCCCCCCcccccC----CcchhhhhHhhhhcC----CCCCCCC
Q 002077 683 SAICCVCSDPPEDSVVTMC----GHVFCYQCASEYITG----DDNMCPA 723 (972)
Q Consensus 683 ~~~C~iC~d~~~~~vit~C----gH~fC~~Ci~~~~~~----~~~~cp~ 723 (972)
.-.|.+|.+.+++.-.-.| +|-||..|-.++|.. .+-.||.
T Consensus 8 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPS 56 (80)
T d2cs3a1 8 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 56 (80)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred ceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCC
Confidence 3569999999988644444 899999999999863 3446663
No 68
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=62.94 E-value=6.7 Score=41.73 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.6
Q ss_pred CceEEEcCch-hHHHHHHHHHhhCCC
Q 002077 385 AGTLVVCPAS-VLRQWARELEDKVPD 409 (972)
Q Consensus 385 ~~tLIV~P~s-Ll~QW~~Ei~k~~~~ 409 (972)
+++|||||.. ...||.+++..+++.
T Consensus 57 rp~LVVt~n~~~A~qL~~dL~~~l~~ 82 (413)
T d1t5la1 57 KPTLVIAHNKTLAGQLYSELKEFFPH 82 (413)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHcCC
Confidence 4599999975 679999999999974
No 69
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=54.96 E-value=6.6 Score=37.33 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=34.4
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHhhc
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~~~ 321 (972)
.++|||..+..-+.+.-.....+.+=||.-.-|.|||-.|.+++....
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence 578999888776665544332233357899999999999988886543
No 70
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=47.12 E-value=10 Score=37.41 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=26.0
Q ss_pred cCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 274 ~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
+|-|-|.++|.|- ..+ .++--..|.|||.+++..+.+
T Consensus 1 ~L~~eQ~~av~~~----~~~-----~lI~g~aGTGKTt~l~~rv~~ 37 (306)
T d1uaaa1 1 RLNPGQQQAVEFV----TGP-----CLVLAGAGSGKTRVITNKIAH 37 (306)
T ss_dssp CCCHHHHHHHHCC----SSE-----EEECCCTTSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCC----CCC-----EEEEeeCCccHHHHHHHHHHH
Confidence 4789999999761 222 245556899999988776654
No 71
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=42.37 E-value=21 Score=37.49 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.3
Q ss_pred CceEEEcCch-hHHHHHHHHHhhCCC
Q 002077 385 AGTLVVCPAS-VLRQWARELEDKVPD 409 (972)
Q Consensus 385 ~~tLIV~P~s-Ll~QW~~Ei~k~~~~ 409 (972)
+++|||||.. -..+|.+++..++++
T Consensus 54 rp~LvVt~~~~~A~~l~~dL~~~l~~ 79 (408)
T d1c4oa1 54 RPALVLAPNKILAAQLAAEFRELFPE 79 (408)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEeCCHHHHHHHHHHHHHhcCc
Confidence 4599999975 679999999999874
No 72
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.57 E-value=80 Score=29.64 Aligned_cols=93 Identities=10% Similarity=-0.006 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCee-EEEEecCccccccCCCCCCEEEEecCCCCCC---
Q 002077 826 WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAGNLGLNMVAASHVILLDLWWNPT--- 901 (972)
Q Consensus 826 ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~-VlLiSlkagg~GLNLt~A~~VI~~Dp~WNp~--- 901 (972)
|..++.-|...|+++|+....++...+.+...+.++.|... .+. |+|+....-..-+......-+++++..+...
T Consensus 17 ~~~~~~~i~~~~~~~Gy~~~~~~s~~d~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~p~v~i~~~~~~~~~v 95 (255)
T d1byka_ 17 ENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRR-NIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASV 95 (255)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTT-TCCEEEEECCTTCCTTTSGGGSSSEEEESSCCSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhc-cccceeeccccchHHHHHHHcCCCEEEeccCCCCCCEE
Confidence 45688999999999999999999888888888889999875 344 3444332222222122223455666655432
Q ss_pred ------hHHHHhHhhcccCCcccE
Q 002077 902 ------TEDQAVDRAHRIGQTRPV 919 (972)
Q Consensus 902 ------~e~QAigRi~RiGQ~k~V 919 (972)
.-.++..+....|-++-+
T Consensus 96 ~~D~~~~g~~~~~~L~~~g~~~i~ 119 (255)
T d1byka_ 96 CYDDEGAIKILMQRLYDQGHRNIS 119 (255)
T ss_dssp EECHHHHHHHHHHHHHHTTCCCEE
T ss_pred EeCcHHHHHHHHHHHHHhcccccc
Confidence 345777788888876533
No 73
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=38.27 E-value=5 Score=25.53 Aligned_cols=28 Identities=25% Similarity=0.704 Sum_probs=22.3
Q ss_pred ccccCCCCCCCcccc-cCCcchhhhhHhh
Q 002077 685 ICCVCSDPPEDSVVT-MCGHVFCYQCASE 712 (972)
Q Consensus 685 ~C~iC~d~~~~~vit-~CgH~fC~~Ci~~ 712 (972)
.|..|...++...++ .-|.+||..|...
T Consensus 2 rca~cgk~lestt~adkdgeiyck~cyak 30 (31)
T d1ibia2 2 RCAKCGKSLESTTLTEKEGEIYCKGCYAK 30 (31)
T ss_dssp ECSSSCCEECSSCSEEETTEEECHHHHHH
T ss_pred ccccccCccccceeeccCCcEEEeeeeec
Confidence 488898888876554 6899999999764
No 74
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.04 E-value=48 Score=27.68 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=38.4
Q ss_pred eEEEEecch------HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 819 KSIVFSQWT------RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 819 KvIVFSqft------~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
+|+||+-.+ .+-..+...|+..+++|..++=......+ +.+..+...+.+..+.+.-+.
T Consensus 16 ~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~-~~l~~~t~~~TvPqIFi~g~~ 80 (109)
T d1wika_ 16 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVR-QGLKTFSNWPTYPQLYVRGDL 80 (109)
T ss_dssp SEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHH-HHHHHHHSCCSSCEEECSSSE
T ss_pred CEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHHHH-HHHHHhcCCCCCCeEEECCEE
Confidence 899996432 24566777899999999998877665544 455556654444444444343
No 75
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=30.27 E-value=56 Score=26.87 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=41.9
Q ss_pred ceEEEEecch-HHHHHHHHHHHhCCCc-----EEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 818 IKSIVFSQWT-RMLDLVENSLNQHCIQ-----YRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 818 ~KvIVFSqft-~~ld~L~~~L~~~gi~-----~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
.||+|||.-. .+...+...|.+.|++ +..++-.......++.+.++...+.+..+.+.
T Consensus 12 ~~Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~ 75 (105)
T d1ktea_ 12 GKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIG 75 (105)
T ss_dssp TCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEET
T ss_pred CCEEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEEC
Confidence 3899999865 5678888889988865 66666666667788888888765544444444
No 76
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.66 E-value=67 Score=26.70 Aligned_cols=55 Identities=5% Similarity=0.073 Sum_probs=39.1
Q ss_pred CceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc
Q 002077 817 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 878 (972)
Q Consensus 817 ~~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka 878 (972)
|.||||.-.-..+...+...|+..|+.+..... .+ ++++.+++. .+.++|+...-
T Consensus 1 P~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~---~~---~a~~~~~~~-~~dliilD~~m 55 (120)
T d1zgza1 1 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTAS---GA---GLREIMQNQ-SVDLILLDINL 55 (120)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESS---HH---HHHHHHHHS-CCSEEEEESCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECC---HH---HHHHHHHhc-CCCEEeeehhh
Confidence 359999999999999999999999987654432 22 344445543 56677776654
No 77
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.27 E-value=16 Score=23.77 Aligned_cols=30 Identities=20% Similarity=0.574 Sum_probs=24.3
Q ss_pred ccccCCCCCCC-cccccCCcchhhhhHhhhh
Q 002077 685 ICCVCSDPPED-SVVTMCGHVFCYQCASEYI 714 (972)
Q Consensus 685 ~C~iC~d~~~~-~vit~CgH~fC~~Ci~~~~ 714 (972)
.|.-|..++.+ .-+..-|.++|..|..+++
T Consensus 1 nCa~C~~sL~d~gFVEE~g~lYCe~Cye~ff 31 (32)
T d2dara1 1 NCAHCKNTMAYIGFVEEKGALYCELCYEKFF 31 (32)
T ss_dssp BCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred CcccccccHhhcceeeecCcEeHHHHHHHhc
Confidence 37888888765 5677889999999999875
No 78
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.88 E-value=58 Score=27.34 Aligned_cols=86 Identities=9% Similarity=0.084 Sum_probs=55.1
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCcc-ccccCCCC------CCEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG-NLGLNMVA------ASHV 891 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlkag-g~GLNLt~------A~~V 891 (972)
||||.-.-..+...+...|++.|+.+...... + ++++.+... .+.++|+...-. .-|+.+.. .--|
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~---~---~al~~l~~~-~~dlii~D~~mp~~~G~~~~~~~r~~~~~pi 76 (121)
T d1xhfa1 4 HILIVEDELVTRNTLKSIFEAEGYDVFEATDG---A---EMHQILSEY-DINLVIMDINLPGKNGLLLARELREQANVAL 76 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSH---H---HHHHHHHHS-CCSEEEECSSCSSSCHHHHHHHHHHHCCCEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCh---H---HHHHHHHhc-CCCEEEeecccCCccCcHHHHHHHhcCCCcE
Confidence 99999999999999999999999876654322 2 445555543 567777776542 23444321 2356
Q ss_pred EEecCCCCCChHHHHhHhhcccCC
Q 002077 892 ILLDLWWNPTTEDQAVDRAHRIGQ 915 (972)
Q Consensus 892 I~~Dp~WNp~~e~QAigRi~RiGQ 915 (972)
|++....++.... ++.+.|-
T Consensus 77 i~lt~~~~~~~~~----~a~~~Ga 96 (121)
T d1xhfa1 77 MFLTGRDNEVDKI----LGLEIGA 96 (121)
T ss_dssp EEEESCCSHHHHH----HHHHHTC
T ss_pred EEEECCCCHHHHH----HHHHcCC
Confidence 7776665554443 4456664
No 79
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=26.75 E-value=29 Score=34.20 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=26.5
Q ss_pred ccCchhHHHHHHHHHHhhhcCCCccCceeecCCCChhHHHHHHHHHh
Q 002077 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (972)
Q Consensus 273 ~~LrpyQk~al~wml~~e~~~~~~~GGILADdmGLGKTiqaIali~~ 319 (972)
..|-+-|+++|.+- ..+ -++.-.-|.|||.+++.-|..
T Consensus 10 ~~L~~eQ~~~v~~~----~g~-----~lV~g~aGSGKTt~l~~ri~~ 47 (318)
T d1pjra1 10 AHLNKEQQEAVRTT----EGP-----LLIMAGAGSGKTRVLTHRIAY 47 (318)
T ss_dssp TTSCHHHHHHHHCC----SSC-----EEEEECTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHhCC----CCC-----EEEEecCCccHHHHHHHHHHH
Confidence 35889999998742 222 245556799999998876654
No 80
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.20 E-value=55 Score=27.99 Aligned_cols=31 Identities=23% Similarity=0.562 Sum_probs=21.2
Q ss_pred cccccccCCCCCCC---ccc--ccCCcchhhhhHhh
Q 002077 682 SSAICCVCSDPPED---SVV--TMCGHVFCYQCASE 712 (972)
Q Consensus 682 ~~~~C~iC~d~~~~---~vi--t~CgH~fC~~Ci~~ 712 (972)
+...|.+|..++.. ... ..||+++|..|-..
T Consensus 47 ~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~ 82 (124)
T d1zbdb_ 47 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 82 (124)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCCcCcccCCcccCCCCCCCcCccCCcccccCCCCC
Confidence 45679999876542 222 35999999999644
No 81
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=25.67 E-value=1e+02 Score=25.73 Aligned_cols=85 Identities=11% Similarity=0.188 Sum_probs=53.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc-cccccCCCC-------CCE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA-GNLGLNMVA-------ASH 890 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka-gg~GLNLt~-------A~~ 890 (972)
||||.-.-..+...|...|+..|+.+..... -+++++.++.. .+.++|+...- +.-|+.+.. -..
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~------~~~al~~~~~~-~~dliilD~~mp~~~G~~~~~~i~~~~~~~~ 76 (128)
T d1yioa2 4 TVFVVDDDMSVREGLRNLLRSAGFEVETFDC------ASTFLEHRRPE-QHGCLVLDMRMPGMSGIELQEQLTAISDGIP 76 (128)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESS------HHHHHHHCCTT-SCEEEEEESCCSSSCHHHHHHHHHHTTCCCC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcccccc------HHHHHHHHHhc-CCCEeehhhhcccchhHHHHHHHHhhCCCCe
Confidence 8999999999999999999999987654432 23566666643 67777777653 444554422 234
Q ss_pred EEEecCCCCCChHHHHhHhhcccC
Q 002077 891 VILLDLWWNPTTEDQAVDRAHRIG 914 (972)
Q Consensus 891 VI~~Dp~WNp~~e~QAigRi~RiG 914 (972)
||++.-..+..... ++.+.|
T Consensus 77 ii~lt~~~~~~~~~----~a~~~G 96 (128)
T d1yioa2 77 IVFITAHGDIPMTV----RAMKAG 96 (128)
T ss_dssp EEEEESCTTSCCCH----HHHHTT
T ss_pred EEEEEEECCHHHHH----HHHHCC
Confidence 55554444444333 344555
No 82
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=24.57 E-value=32 Score=29.81 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhccccCccchhhhhcccCCCCCCccccCCCCCCCceEEEEecch-------------HHHHHHHHHHHhC
Q 002077 774 IRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWT-------------RMLDLVENSLNQH 840 (972)
Q Consensus 774 i~~l~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIVFSqft-------------~~ld~L~~~L~~~ 840 (972)
+...++.|+.+..+|. +++|||.-. ...+.....|+++
T Consensus 26 ~~~~Ie~l~~l~~~G~-----------------------------~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~ 76 (124)
T d1xpja_ 26 RLDVIEQLREYHQLGF-----------------------------EIVISTARNMRTYEGNVGKINIHTLPIITEWLDKH 76 (124)
T ss_dssp CHHHHHHHHHHHHTTC-----------------------------EEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCC-----------------------------EEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHc
Confidence 3456788888888887 999999863 3567889999999
Q ss_pred CCcEEEE
Q 002077 841 CIQYRRL 847 (972)
Q Consensus 841 gi~~~~l 847 (972)
||+|-.|
T Consensus 77 gI~Yd~L 83 (124)
T d1xpja_ 77 QVPYDEI 83 (124)
T ss_dssp TCCCSEE
T ss_pred CCCceEE
Confidence 9987554
No 83
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.23 E-value=1.4e+02 Score=24.73 Aligned_cols=87 Identities=10% Similarity=0.188 Sum_probs=52.3
Q ss_pred ceEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc-cccccCCCC-------CC
Q 002077 818 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA-GNLGLNMVA-------AS 889 (972)
Q Consensus 818 ~KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka-gg~GLNLt~-------A~ 889 (972)
.||||.-.-..+.+.+...|+..|+.+...... .++++.+... .+.++|+...- +.-|+.+.. .-
T Consensus 2 irILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~------~~al~~l~~~-~~dlillD~~mp~~~g~~~~~~lr~~~~~~ 74 (122)
T d1kgsa2 2 VRVLVVEDERDLADLITEALKKEMFTVDVCYDG------EEGMYMALNE-PFDVVILDIMLPVHDGWEILKSMRESGVNT 74 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSH------HHHHHHHHHS-CCSEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcch------HHHHHHHHhh-CccccccccccccchhHHHHHHHHhcCCCC
Confidence 389999999999999999999999886654332 2345555543 56667766553 334444321 12
Q ss_pred EEEEecCCCCCChHHHHhHhhcccCC
Q 002077 890 HVILLDLWWNPTTEDQAVDRAHRIGQ 915 (972)
Q Consensus 890 ~VI~~Dp~WNp~~e~QAigRi~RiGQ 915 (972)
-||++.-.-.+ .-.-++.+.|-
T Consensus 75 piI~lt~~~~~----~~~~~~~~~Ga 96 (122)
T d1kgsa2 75 PVLMLTALSDV----EYRVKGLNMGA 96 (122)
T ss_dssp CEEEEESSCHH----HHHHHTCCCCC
T ss_pred cEEEEcCCCCH----HHHHHHHHcCC
Confidence 35555444222 23335666774
No 84
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=21.89 E-value=75 Score=26.44 Aligned_cols=80 Identities=8% Similarity=0.101 Sum_probs=45.7
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc-cccccCCCC-------CCE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA-GNLGLNMVA-------ASH 890 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka-gg~GLNLt~-------A~~ 890 (972)
||||.-.-..+.+.+...|++.|+.+...-.+ .. ++++..+.. .+.++|+...- +.-|+.+.. .-.
T Consensus 3 rILivDD~~~~~~~l~~~L~~~g~~v~~~a~~--~~---~al~~~~~~-~~dliilD~~mp~~~G~e~~~~ir~~~~~~p 76 (118)
T d1u0sy_ 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATN--GR---EAVEKYKEL-KPDIVTMDITMPEMNGIDAIKEIMKIDPNAK 76 (118)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESS--HH---HHHHHHHHH-CCSEEEEECSCGGGCHHHHHHHHHHHCTTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCceEEEECC--HH---HHHHHHHhc-cCCEEEEecCCCCCCHHHHHHHHHHhCCCCc
Confidence 88888888888999999999888875432111 12 334444432 45666666554 334544432 123
Q ss_pred EEEecCCCCCChHH
Q 002077 891 VILLDLWWNPTTED 904 (972)
Q Consensus 891 VI~~Dp~WNp~~e~ 904 (972)
||++.-.-++....
T Consensus 77 vi~ls~~~~~~~~~ 90 (118)
T d1u0sy_ 77 IIVCSAMGQQAMVI 90 (118)
T ss_dssp EEEEECTTCHHHHH
T ss_pred EEEEEccCCHHHHH
Confidence 56665443333333
No 85
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.43 E-value=17 Score=27.63 Aligned_cols=32 Identities=25% Similarity=0.696 Sum_probs=22.9
Q ss_pred cccccccCCCCCCCccc----ccCCcchhhhhHhhh
Q 002077 682 SSAICCVCSDPPEDSVV----TMCGHVFCYQCASEY 713 (972)
Q Consensus 682 ~~~~C~iC~d~~~~~vi----t~CgH~fC~~Ci~~~ 713 (972)
+...|..|..++....- -.||++||..|....
T Consensus 7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~~ 42 (64)
T d1joca1 7 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 42 (64)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCcCCcccCCccccchhhhCCeecccccCCc
Confidence 45679999877654322 249999999997754
No 86
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=20.57 E-value=1.1e+02 Score=23.26 Aligned_cols=55 Identities=7% Similarity=0.193 Sum_probs=38.9
Q ss_pred eEEEEec-chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEe
Q 002077 819 KSIVFSQ-WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 875 (972)
Q Consensus 819 KvIVFSq-ft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiS 875 (972)
||.||+. +=.....+...|.+.||.|..++=....+.++ .++.... ..+.++++.
T Consensus 2 ki~iYs~~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~-~~~~~g~-~tvP~i~i~ 57 (76)
T d1h75a_ 2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAE-ALRAQGF-RQLPVVIAG 57 (76)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHH-HHHHTTC-CSSCEEEET
T ss_pred EEEEEeCCCCccHHHHHHHHHhcCceeEEEeecCCHHHHH-HHHhcCC-CCCCEEEEC
Confidence 6889986 34568889999999999999999887655444 3444443 355555554
No 87
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=20.37 E-value=2.3e+02 Score=23.74 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=52.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc-cccccCCCC-------CC-
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA-GNLGLNMVA-------AS- 889 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka-gg~GLNLt~-------A~- 889 (972)
||||.-.-....+.|...|...|+.+...... . ++++.+... .+.++|+...- +.-|+.+.. ..
T Consensus 3 rILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~---~---eal~~~~~~-~~dlil~D~~~p~~~G~~~~~~ir~~~~~~~ 75 (139)
T d1w25a1 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDG---P---TALAMAARD-LPDIILLDVMMPGMDGFTVCRKLKDDPTTRH 75 (139)
T ss_dssp EEEEECSSTTHHHHHHHHHHHTTCEEEEESSH---H---HHHHHHHHH-CCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEccc---h---hhhhhhhcc-cceeeeeeccccCCCchHHHHHhhhcccccC
Confidence 99999999999999999999999976543322 2 455555543 45566666543 333554322 11
Q ss_pred -EEEEecCCCCCChHHHHhHhhcccCC
Q 002077 890 -HVILLDLWWNPTTEDQAVDRAHRIGQ 915 (972)
Q Consensus 890 -~VI~~Dp~WNp~~e~QAigRi~RiGQ 915 (972)
-||++...-++.... ++.+.|-
T Consensus 76 ~piI~lt~~~~~~~~~----~a~~~Ga 98 (139)
T d1w25a1 76 IPVVLITALDGRGDRI----QGLESGA 98 (139)
T ss_dssp SCEEEEECSSCHHHHH----HHHHHTC
T ss_pred CCEEEEEcCCCHHHHH----HHHHcCC
Confidence 267776554444333 4445553
No 88
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.06 E-value=1.1e+02 Score=25.21 Aligned_cols=86 Identities=10% Similarity=0.185 Sum_probs=52.6
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhhhcCCCeeEEEEecCc-cccccCCCC------CCEE
Q 002077 819 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA-GNLGLNMVA------ASHV 891 (972)
Q Consensus 819 KvIVFSqft~~ld~L~~~L~~~gi~~~~ldGs~s~~~R~~~I~~F~~~~~~~VlLiSlka-gg~GLNLt~------A~~V 891 (972)
||||.-.-..+...+...|+..|+.+...... . ++++.++.. .+.++|+...- +.-|+.+.. ..-|
T Consensus 2 rILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~---~---eal~~~~~~-~~dlillD~~mp~~~G~~~~~~i~~~~~~pv 74 (117)
T d2a9pa1 2 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNG---R---EALEQFEAE-QPDIIILDLMLPEIDGLEVAKTIRKTSSVPI 74 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSH---H---HHHHHHHHH-CCSEEEECSSCSSSCHHHHHHHHHTTCCCCE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCH---H---HHHHHHHhc-CCCEEEeccccCCCCccHHHHHHHhCCCCCE
Confidence 89999999999999999999999986554332 2 445555543 45667766543 234544321 2346
Q ss_pred EEecCCCCCChHHHHhHhhcccCC
Q 002077 892 ILLDLWWNPTTEDQAVDRAHRIGQ 915 (972)
Q Consensus 892 I~~Dp~WNp~~e~QAigRi~RiGQ 915 (972)
|++...-++.... ++.+.|-
T Consensus 75 I~lt~~~~~~~~~----~a~~~Ga 94 (117)
T d2a9pa1 75 LMLSAKDSEFDKV----IGLELGA 94 (117)
T ss_dssp EEEESCCSHHHHH----HHHHHTC
T ss_pred EEEecCCCHHHHH----HHHHcCC
Confidence 6665554433332 4455664
Done!