Your job contains 1 sequence.
>002079
MSSPVFLSSAFSTANGHLPLLSPRPATCPCPGFASKPTLAPTATFFYRESVHPRFRCCCC
CSSSSSSSSSSMPLELSTSASDQDDDLGDSLLYSRAYWVSESIIAWNVDVPDGSCYLYAS
RTAALSISYGGIQGADVEIELQEDKGGLPANVIEKFPHIRDYKAFKVPAGSDAKLLLKCQ
LAVADRKCSDATGLQLPGILDELFSYDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPL
GGNPLEVVQLKENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSD
GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGY
LAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTF
SSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYA
SNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNS
DGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHAL
HSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGG
SPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGN
KVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLKGIPFFHCGDEILRSKSL
DRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAAL
ENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLD
SNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPR
TTSVFVEPRAT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002079
(971 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2179919 - symbol:LDA "limit dextrinase" specie... 1382 0. 3
TIGR_CMR|CPS_0996 - symbol:CPS_0996 "alpha amylase family... 965 1.3e-139 3
TIGR_CMR|CPS_1694 - symbol:CPS_1694 "putative pullulanase... 812 6.5e-80 1
TIGR_CMR|BA_2728 - symbol:BA_2728 "pullulanase, putative"... 373 1.2e-49 3
UNIPROTKB|Q81KP1 - symbol:BAS4597 "Putative pullulanase" ... 318 4.6e-47 4
TIGR_CMR|BA_4953 - symbol:BA_4953 "pullulanase, putative"... 318 4.6e-47 4
TAIR|locus:2122343 - symbol:ISA3 "isoamylase 3" species:3... 216 2.7e-19 3
UNIPROTKB|Q9KKS1 - symbol:VC_A1029 "Glycogen operon prote... 214 3.1e-16 3
TIGR_CMR|VC_A1029 - symbol:VC_A1029 "glycogen operon prot... 214 3.1e-16 3
UNIPROTKB|Q8EGU6 - symbol:glgX "Glycogen isoamylase GlgX"... 193 6.7e-15 3
TIGR_CMR|SO_1495 - symbol:SO_1495 "glycogen operon protei... 193 6.7e-15 3
UNIPROTKB|P15067 - symbol:glgX species:83333 "Escherichia... 161 1.8e-12 2
TAIR|locus:2061216 - symbol:ISA1 "isoamylase 1" species:3... 188 1.8e-12 2
TIGR_CMR|GSU_2358 - symbol:GSU_2358 "isoamylase family pr... 134 1.7e-05 3
>TAIR|locus:2179919 [details] [associations]
symbol:LDA "limit dextrinase" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds"
evidence=IEA] [GO:0004556 "alpha-amylase activity" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=ISM] [GO:0005975
"carbohydrate metabolic process" evidence=IEA;ISS] [GO:0043169
"cation binding" evidence=IEA] [GO:0051060 "pullulanase activity"
evidence=IEA;IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0010303 "limit dextrinase activity" evidence=IDA] [GO:0005983
"starch catabolic process" evidence=IMP;TAS] [GO:0019252 "starch
biosynthetic process" evidence=RCA;IMP] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0000023 "maltose metabolic process"
evidence=RCA] [GO:0000272 "polysaccharide catabolic process"
evidence=RCA] [GO:0005982 "starch metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0015996
"chlorophyll catabolic process" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0019760 "glucosinolate metabolic process" evidence=RCA]
[GO:0019761 "glucosinolate biosynthetic process" evidence=RCA]
InterPro:IPR004193 InterPro:IPR006047 InterPro:IPR011839
InterPro:IPR013781 InterPro:IPR015902 Pfam:PF00128 Pfam:PF02922
UniPathway:UPA00152 UniPathway:UPA00153 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 Gene3D:2.60.40.10
InterPro:IPR013783 GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13 PANTHER:PTHR10357
CAZy:CBM48 GO:GO:0005983 InterPro:IPR014756 SUPFAM:SSF81296
GO:GO:0019252 eggNOG:COG1523 EMBL:BT002411 IPI:IPI00530984
RefSeq:NP_196056.2 UniGene:At.26109 ProteinModelPortal:Q8GTR4
SMR:Q8GTR4 STRING:Q8GTR4 PaxDb:Q8GTR4 PRIDE:Q8GTR4
EnsemblPlants:AT5G04360.1 GeneID:830315 KEGG:ath:AT5G04360
TAIR:At5g04360 HOGENOM:HOG000251916 InParanoid:Q8GTR4 OMA:ERCRINH
Genevestigator:Q8GTR4 GO:GO:0010303 GO:GO:0051060
InterPro:IPR024561 Pfam:PF11852 TIGRFAMs:TIGR02103 Uniprot:Q8GTR4
Length = 965
Score = 1382 (491.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 269/381 (70%), Positives = 306/381 (80%)
Query: 436 DAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRM 495
D +LE L PDSTE QA+IT IQNDDGYNWGYNPVLWGVPKGSYAS+P G CR IEFR+M
Sbjct: 405 DTSLLEGLRPDSTEAQARITEIQNDDGYNWGYNPVLWGVPKGSYASDPTGPCRIIEFRKM 464
Query: 496 VQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTAS 555
VQALN GL+VVLDVVYNHL SGP D SVLDK+VPGYYLRRNSDGFIE+STC+NNTAS
Sbjct: 465 VQALNCTGLNVVLDVVYNHLHASGPHDKESVLDKIVPGYYLRRNSDGFIENSTCVNNTAS 524
Query: 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSI 615
EHYMV+RLI DDLL W VNYKVDGFRFDLMGHIMK+T++ AK A+ SL KE GVDGS I
Sbjct: 525 EHYMVDRLIRDDLLNWVVNYKVDGFRFDLMGHIMKATIVNAKSAIGSLRKETDGVDGSRI 584
Query: 616 YIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGL 675
Y+YGEGW+FGEVA+NGRG+NASQFNL GTGIGSFNDRIRDA LGGSPFG PLQQGF+TGL
Sbjct: 585 YLYGEGWNFGEVAENGRGINASQFNLGGTGIGSFNDRIRDATLGGSPFGHPLQQGFITGL 644
Query: 676 LLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPV 735
LLQPN HDHG++A +E ML+ AK+HIQ G+AANL+D+ LTN EG +VKGSEV +D TPV
Sbjct: 645 LLQPNAHDHGSEATQELMLSTAKNHIQTGMAANLKDYMLTNHEGKEVKGSEVLMHDATPV 704
Query: 736 AYALCPTETISYVSAHDNETLFDVVSLKGIPFFHCGDEILRSKSLDRDS---------YN 786
AYA PTETI+YVSAHDNETLFD++SLK P DE R L ++
Sbjct: 705 AYASLPTETINYVSAHDNETLFDIISLK-TPMEISVDERCRINHLASSMIALSQGIPFFH 763
Query: 787 SGDWLNR---IDF-SYNSNNW 803
+GD + R +D SYNS +W
Sbjct: 764 AGDEILRSKSLDRDSYNSGDW 784
Score = 1155 (411.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 217/326 (66%), Positives = 261/326 (80%)
Query: 93 YSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKGGLPANV 152
YSRAYWV++ +IAWNVDV +GSCY YAS++A LS S GI G D+ I+L+ + G LPA+V
Sbjct: 87 YSRAYWVTQGVIAWNVDVGEGSCYFYASKSAGLSFSEDGIDGYDLRIKLEAESGSLPADV 146
Query: 153 IEKFPHIRDYKAFKVPAGSDAKLLLKCQLAV----ADRKCSDATGLQLPGILDELFSYDG 208
IEKFPHIR+YK+FKVP D + L+K QLAV A+ + TGLQLPG+LDELFSYDG
Sbjct: 147 IEKFPHIRNYKSFKVPKDLDIRDLVKSQLAVVCFDAEGRLIQGTGLQLPGVLDELFSYDG 206
Query: 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGPKSWEGC 268
PLGA + E VSL+LWAPTAQ+VS CIY++PL +P+E+ LKE +GVWS +G SW GC
Sbjct: 207 PLGAHFTPEGVSLHLWAPTAQAVSVCIYKNPLDKSPMEICPLKEANGVWSTEGACSWGGC 266
Query: 269 YYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPD 328
YYVY+VSVYHPS +++E CYANDPYARGLS+DGR+T LVNLDSD LKPEGWD L +KP
Sbjct: 267 YYVYKVSVYHPSTMKLETCYANDPYARGLSADGRKTFLVNLDSDDLKPEGWDNLADKKPC 326
Query: 329 ILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLL 388
+ SFSDISIYELHVRDFS +D TV P+ RGGYLAFT ++SAGV HL+KL +AGLTH+HLL
Sbjct: 327 LRSFSDISIYELHVRDFSANDETVEPENRGGYLAFTSKDSAGVKHLQKLVDAGLTHLHLL 386
Query: 389 PTFQFAGVDDRKENWKSVGS--LPGL 412
PTFQF VDD KENWKSV + L GL
Sbjct: 387 PTFQFGDVDDEKENWKSVDTSLLEGL 412
Score = 825 (295.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 153/218 (70%), Positives = 180/218 (82%)
Query: 753 NETLFDVVSL-KGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKE 811
N +++L +GIPFFH GDEILRSKSLDRDSYNSGDW NR+DFSY+SNNWGVGLPPK
Sbjct: 746 NHLASSMIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYSSNNWGVGLPPKG 805
Query: 812 KNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFH 871
KNE NWPLI+PRL DPSFKP+ SHI+A L NF D+LRIRYSSPLFRL TA AIQER+ FH
Sbjct: 806 KNEHNWPLIKPRLQDPSFKPKSSHIVATLHNFLDLLRIRYSSPLFRLDTARAIQERVRFH 865
Query: 872 NTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQL 931
NTGPS++PG IVMSIEDGH G+P +SQ+D YS IVVIFN+ P+E S+ SPAL+ + L+L
Sbjct: 866 NTGPSSIPGAIVMSIEDGHRGIPSVSQIDPIYSLIVVIFNARPSEFSYPSPALKDRKLEL 925
Query: 932 HPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFVEPR 969
HP+QV S DEIVK S Y++ SG F +P RTT+VFVE R
Sbjct: 926 HPVQVMSADEIVKKSVYDSFSGGFTVPARTTTVFVESR 963
>TIGR_CMR|CPS_0996 [details] [associations]
symbol:CPS_0996 "alpha amylase family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004556
"alpha-amylase activity" evidence=ISS] [GO:0016052 "carbohydrate
catabolic process" evidence=ISS] InterPro:IPR004193
InterPro:IPR011839 InterPro:IPR013781 InterPro:IPR015902
Pfam:PF02922 Gene3D:2.60.40.10 InterPro:IPR013783 GO:GO:0043169
Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13
GO:GO:0005975 PANTHER:PTHR10357 CAZy:CBM48 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014756 SUPFAM:SSF81296
eggNOG:COG1523 HOGENOM:HOG000251916 GO:GO:0051060
InterPro:IPR024561 Pfam:PF11852 TIGRFAMs:TIGR02103
RefSeq:YP_267745.1 ProteinModelPortal:Q487M0 STRING:Q487M0
GeneID:3521917 KEGG:cps:CPS_0996 PATRIC:21465271 OMA:ANDAWEI
BioCyc:CPSY167879:GI48-1082-MONOMER Uniprot:Q487M0
Length = 998
Score = 965 (344.8 bits), Expect = 1.3e-139, Sum P(3) = 1.3e-139
Identities = 223/563 (39%), Positives = 319/563 (56%)
Query: 219 VSLYLWAPTAQSVSACIYRD---PLGGNPLEVVQLKENDGVWSIKGPKSWEGCYYVYEVS 275
VS LWAPTAQ+VS ++ D L LE+V+ + GVW + YY Y+V+
Sbjct: 217 VSFKLWAPTAQAVSIQLFDDNLQALSDGKLEMVE-DSSTGVWQVLSDSQASYAYYKYQVN 275
Query: 276 VYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDI 335
VYHP++ +IE DPY+ LS + + +V+L+ +P+ W L + P + + D
Sbjct: 276 VYHPASKKIESLSVTDPYSLSLSVNSEYSQVVDLNDAVTQPKDW--LTQQIPTVKNVEDN 333
Query: 336 SIYELHVRDFSVSDHTVHPD-FRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFA 394
YE H+RDFS ++ + F+G Y AF+ +NS G+ HLK L AGL ++HLLPTF A
Sbjct: 334 VFYETHIRDFSANEQQLSDSGFKGKYKAFSEKNSDGIQHLKALQIAGLNNIHLLPTFDIA 393
Query: 395 GVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQI 454
V++ + G V S +C + L + + EQ Q+
Sbjct: 394 TVNEDDSKHLDIDDSLGKVCAITKNIS----LCQQPYDEKQSIKSLLQSYEVAGEQTQQL 449
Query: 455 TA-IQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYN 513
+ ++ D YNWGY+P + VP+GSYA + G R +EFR MVQ+L+ +G V++DVVYN
Sbjct: 450 VSELREVDNYNWGYDPFHYTVPEGSYAVDAKGVSRLVEFREMVQSLHAMGFRVIMDVVYN 509
Query: 514 HLQGSGPFDDNSVLDKVVPGYYLRRNS-DGFIEHSTCMNNTASEHYMVERLIIDDLLCWA 572
H +G + NSVLDK+VP YY R + G IE STC +NTA+E M+ +L+ D L+ WA
Sbjct: 510 HTHQAG-LEPNSVLDKIVPTYYHRLDPLTGDIEQSTCCDNTATERVMMAKLMTDSLVVWA 568
Query: 573 VNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGR 632
+YK+DGFRFDLMGH K M+ A+ A+ VD + Y YGEGW+FGEVA N +
Sbjct: 569 RDYKIDGFRFDLMGHQPKDAMLTAREAVRL-------VDNDT-YFYGEGWNFGEVASNSQ 620
Query: 633 GVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQ 692
+ ASQ L G+ IG+F+DR+RDA+ GG QG GLL PN + ++ ++
Sbjct: 621 FIQASQLELGGSEIGTFSDRLRDAVRGGGN-NTRDSQGVGNGLLTFPN-NKQPNESQDQT 678
Query: 693 MLAA----AKDHIQVGLAANLRDFQLTN----SEGNKVKGSEVKTYDGTPVAYALCPTET 744
M+ A D +++GLA NL +F L S G KV G ++ Y P YAL P +T
Sbjct: 679 MIQADYALRMDQLRIGLAGNLINFPLRTLKGESNGEKVLGKDIP-YGDQPTGYALDPADT 737
Query: 745 ISYVSAHDNETLFDVVSLKGIPF 767
I+YVS HDN+TL+D + +PF
Sbjct: 738 INYVSKHDNQTLWDNSQYR-LPF 759
Score = 374 (136.7 bits), Expect = 1.3e-139, Sum P(3) = 1.3e-139
Identities = 95/224 (42%), Positives = 127/224 (56%)
Query: 763 KGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRP 822
+GIPF H G E +RSKS RDSY+ GDW NR+DFS N + VGLPP EK++ NWPLI+
Sbjct: 781 QGIPFIHMGSEFMRSKSFLRDSYDYGDWFNRVDFSKQDNFYNVGLPPAEKDKDNWPLIKE 840
Query: 823 RLADPSFKPQKS--HILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGP----- 875
LA + Q + I + F D+L IR SSPLFRL T +I +++ F N G
Sbjct: 841 VLAGHQGRDQVNAEQIQRSSNAFIDMLAIRMSSPLFRLTTEQSIIDKVSFLNAGALKQGG 900
Query: 876 --SAVP-GVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFN-SSPTEV-------SFVSPAL 924
SA G++VM I+D +G +DS Y ++VIFN S T+ F S +
Sbjct: 901 SISAQQTGLLVMKIDDT-QG----EAVDSKYQSLLVIFNISDKTQTFNYNFKEDFDSTST 955
Query: 925 QGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFVEP 968
G QLHPIQ + DE+VK S F++PP ++ VFV+P
Sbjct: 956 HG--YQLHPIQKRGSDEVVKQSKVTVKG--FIVPPLSSVVFVKP 995
Score = 63 (27.2 bits), Expect = 1.3e-139, Sum P(3) = 1.3e-139
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 149 PANVIEKFPHIRDYKAFKVPAGSD-AKLLLKCQLAV 183
P + KFPH+ D++AF++ D +K LK Q+ V
Sbjct: 115 PEKLATKFPHLADFQAFELQLTPDQSKRWLKQQVMV 150
>TIGR_CMR|CPS_1694 [details] [associations]
symbol:CPS_1694 "putative pullulanase" species:167879
"Colwellia psychrerythraea 34H" [GO:0004135
"amylo-alpha-1,6-glucosidase activity" evidence=ISS] [GO:0005976
"polysaccharide metabolic process" evidence=ISS] InterPro:IPR004193
InterPro:IPR005323 InterPro:IPR006047 InterPro:IPR013781
InterPro:IPR015902 Pfam:PF00128 Pfam:PF02922 Pfam:PF03714
Gene3D:2.60.40.10 InterPro:IPR013783 GO:GO:0043169
Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13
GO:GO:0005975 PANTHER:PTHR10357 GO:GO:0004553 GO:GO:0030246
CAZy:CBM48 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014756 SUPFAM:SSF81296 eggNOG:COG1523
HOGENOM:HOG000251916 InterPro:IPR024561 Pfam:PF11852
RefSeq:YP_268432.1 ProteinModelPortal:Q484T3 STRING:Q484T3
CAZy:CBM41 GeneID:3520234 KEGG:cps:CPS_1694 PATRIC:21466561
OMA:FSAQDES ProtClustDB:CLSK938185
BioCyc:CPSY167879:GI48-1771-MONOMER Uniprot:Q484T3
Length = 1429
Score = 812 (290.9 bits), Expect = 6.5e-80, P = 6.5e-80
Identities = 208/586 (35%), Positives = 308/586 (52%)
Query: 96 AYWVSESIIAWNVDVP-DGSCYLYASRTAALSISYGG---IQGADVEIELQEDKGGLPAN 151
A+W+ + WNV+ S L+ S TA + I G VE+ + D L
Sbjct: 221 AHWIDSNTFTWNVNFDLVTSVKLHHSATAGIGADEANEDVITGTVVELS-EVD---LTDE 276
Query: 152 VIEKFPHIRDYKAFKVPAG-SDAKLLLKCQLAV----ADRKCSDATGLQLPGILDELFSY 206
P + D+ AF +AK + K QL + A+ AT +Q +LD+L++
Sbjct: 277 QKAAAPLVADWPAFSGNWSIEEAKAIAKNQLVLVGYNAEGLAVAATNVQADLVLDDLYTK 336
Query: 207 ------DGPLGALYAEETVSLYLWAPTAQSVSACIYR-DPLGGNPLEVVQLKENDGVWSI 259
+ LG +Y TV + +W+PTAQ + +Y D + ++ + GVWS
Sbjct: 337 GEMDANEATLGVVYDNGTVKVSVWSPTAQQLKLNVYNADKEMVSSHDMTE-DSMTGVWSY 395
Query: 260 KGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGW 319
G S + +Y + +++YHP IE+ + DPY+ LS++G + VNL + L+PEGW
Sbjct: 396 TGDASLDRQFYRFALTLYHPENKAIEEIESTDPYSLSLSTNGEYSQFVNLSDEDLQPEGW 455
Query: 320 DKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSN 379
D + I ++ D IYE H+RDFS D + + RG +LAFT NSA + HL+KL
Sbjct: 456 DG--HAVSTIENYEDAVIYEGHIRDFSAQDESTSVENRGKFLAFTEINSAPMQHLQKLVA 513
Query: 380 AGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439
GLTH H+LP A +D+ + + S L N F + C + V
Sbjct: 514 NGLTHFHMLPANDIATIDEDADKIIDLDSTV-LALCKVN-FKA--PPCYQNLDDQTLRAV 569
Query: 440 LEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQAL 499
E P S E A+++ D +NWGY+P + VP G YASNP+G R E R M+++L
Sbjct: 570 FESYSPYSNEAVKLTEAMRDTDSFNWGYDPKHFNVPDGIYASNPDGVSRIKEMRAMIKSL 629
Query: 500 NHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRN-SDGFIEHSTCMNNTASEHY 558
+ IGL VVLDVVYNH +G +D NSVLDK VPGYY R+ + G +++STC ++TA EH
Sbjct: 630 HDIGLRVVLDVVYNHTNSAGLWD-NSVLDKFVPGYYHSRDVTTGAVQNSTCCSDTALEHR 688
Query: 559 MVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIY 618
M+++L++D L W Y+ DGFRFD+M K M+ A+ A+ ++ + H Y
Sbjct: 689 MMDKLMVDSLKQWTEQYQFDGFRFDIMSQGSKEQMLAARDAIQAIDPDNH--------FY 740
Query: 619 GEGWDFGEVAKNGRGVN-ASQFNLSGTGIGSFNDRIRDAMLGGSPF 663
GEGW K+ RG A Q N++GT I ++NDRIRD + + F
Sbjct: 741 GEGW-----YKDSRGFERADQENMAGTEIATYNDRIRDGIRNATLF 781
Score = 802 (287.4 bits), Expect = 7.8e-79, P = 7.8e-79
Identities = 197/534 (36%), Positives = 288/534 (53%)
Query: 439 VLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQA 498
V E P S E A+++ D +NWGY+P + VP G YASNP+G R E R M+++
Sbjct: 569 VFESYSPYSNEAVKLTEAMRDTDSFNWGYDPKHFNVPDGIYASNPDGVSRIKEMRAMIKS 628
Query: 499 LNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRN-SDGFIEHSTCMNNTASEH 557
L+ IGL VVLDVVYNH +G +D NSVLDK VPGYY R+ + G +++STC ++TA EH
Sbjct: 629 LHDIGLRVVLDVVYNHTNSAGLWD-NSVLDKFVPGYYHSRDVTTGAVQNSTCCSDTALEH 687
Query: 558 YMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYI 617
M+++L++D L W Y+ DGFRFD+M K M+ A+ A+ ++ + H
Sbjct: 688 RMMDKLMVDSLKQWTEQYQFDGFRFDIMSQGSKEQMLAARDAIQAIDPDNH--------F 739
Query: 618 YGEGWDFGEVAKNGRGVN-ASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLL 676
YGEGW K+ RG A Q N++GT I ++NDRIRD + + F +
Sbjct: 740 YGEGW-----YKDSRGFERADQENMAGTEIATYNDRIRDGIRNATLFNNESDSDYP---F 791
Query: 677 LQPNGHDHGTKAVE-EQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPV 735
Q + G + + +L K VG +A + + K +D +
Sbjct: 792 EQQDIVKFGMAGTQTDYVLKTFKGTDVVGSSAGMYAKDPADIINYVSKHDNETLWD--IL 849
Query: 736 AYALCPTETISYVSAHDNETLFDVVSLKGIPFFHCGDEILRSKSLDRDSYNSGDWLNRID 795
+ L P S N + V+ +GIPF G + LRSKSLDR++Y++GDW N +D
Sbjct: 850 QFKLSPEMNNSERVRAQNISQSIVLLSQGIPFLQMGGDFLRSKSLDRNTYDAGDWYNLVD 909
Query: 796 FSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPL 855
F++ NNW GLP + +++ I + S + IL A F++ L IR SSPL
Sbjct: 910 FTFELNNWNKGLP-LDNGGRDYDDIVSLASSSSSTVSMTDILFASNVFNEFLSIRTSSPL 968
Query: 856 FRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPT 915
FRL TA I R+ FHN G + G+IVMSI+DG L+ +D NY +VV+ N + +
Sbjct: 969 FRLTTATDIINRVGFHNIGKNQTQGLIVMSIDDGST----LTDIDPNYDALVVVVNGTNS 1024
Query: 916 EVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYE--ANSGCFVIPPRTTSVFVE 967
E + + N LHP+ SVD V ++++E + G F +PP TT+VFV+
Sbjct: 1025 EQTHTIAS--ASNFTLHPLLAGSVDGTVASATFEQGTDEGSFTVPPLTTAVFVK 1076
>TIGR_CMR|BA_2728 [details] [associations]
symbol:BA_2728 "pullulanase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0004556 "alpha-amylase activity"
evidence=ISS] [GO:0005975 "carbohydrate metabolic process"
evidence=ISS] InterPro:IPR004193 InterPro:IPR005323
InterPro:IPR006047 InterPro:IPR013781 InterPro:IPR015902
Pfam:PF00128 Pfam:PF02922 Pfam:PF03714 InterPro:IPR013780
Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13 GO:GO:0005975
Gene3D:2.60.40.1180 PANTHER:PTHR10357 GO:GO:0004553 GO:GO:0030246
CAZy:CBM48 CAZy:CBM41 HOGENOM:HOG000059883 KO:K01200
InterPro:IPR011840 TIGRFAMs:TIGR02104 RefSeq:NP_845079.1
RefSeq:YP_019369.1 RefSeq:YP_028802.1 ProteinModelPortal:Q81PS2
DNASU:1087991 EnsemblBacteria:EBBACT00000012098
EnsemblBacteria:EBBACT00000015197 EnsemblBacteria:EBBACT00000019412
GeneID:1087991 GeneID:2817025 GeneID:2849078 KEGG:ban:BA_2728
KEGG:bar:GBAA_2728 KEGG:bat:BAS2542 OMA:MHKLSSS
ProtClustDB:CLSK875993 BioCyc:BANT260799:GJAJ-2607-MONOMER
BioCyc:BANT261594:GJ7F-2700-MONOMER Uniprot:Q81PS2
Length = 852
Score = 373 (136.4 bits), Expect = 1.2e-49, Sum P(3) = 1.2e-49
Identities = 90/219 (41%), Positives = 123/219 (56%)
Query: 459 NDDGYNWGYNPVLWGVPKGSYASNP-NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517
N+ YNWGY+P + VP+GSY++NP + R E ++M+Q L+ L VV+DVVYNH+
Sbjct: 423 NEPQYNWGYDPKNFNVPEGSYSTNPYEPTVRITELKQMIQTLHDNNLRVVMDVVYNHMYN 482
Query: 518 SGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCM-NNTASEHYMVERLIIDDLLCWAVNYK 576
+ S K+VPGYY R N DG + T + N+TASE M+ + +ID + WA Y
Sbjct: 483 AA----ESNFHKLVPGYYYRYNEDGTFANGTGVGNDTASERTMMRKFMIDSVTYWAKEYN 538
Query: 577 VDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNA 636
+DGFRFDLMG TM + + K ++ +D SI ++GEGWD + A
Sbjct: 539 LDGFRFDLMGIHDYETM-------NEIRKAVNQID-PSIILHGEGWDLNTPL--AAELKA 588
Query: 637 SQFNLSGT-GIGSFNDRIRDAMLGGSPFGPPLQQGFVTG 674
+Q N GI FND IRD L GS F + GFV G
Sbjct: 589 NQKNAEKMKGIAHFNDNIRDG-LKGSVFEEK-ENGFVNG 625
Score = 236 (88.1 bits), Expect = 1.2e-49, Sum P(3) = 1.2e-49
Identities = 67/210 (31%), Positives = 103/210 (49%)
Query: 201 DELFSYDG-PLGALYAEETVSLYLWAPTAQSVSACIYR---DPLGGNPLEVVQLKENDGV 256
D LF Y G LG +Y + +WAPTA Y+ D +G E+ + G
Sbjct: 228 DYLFYYGGNDLGNIYTPQHTKFRVWAPTASEAKLVTYKKWNDKIG---TEINMQQGEKGT 284
Query: 257 WSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKP 316
W + + +G YY Y+V + + A DPYAR S +G + +V+L+ +T P
Sbjct: 285 WKAELKGNQKGLYYTYKVKIGD------KWTEAVDPYARAASVNGDKGAVVDLE-ET-NP 336
Query: 317 EGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKK 376
+ W+ +KP + + D IYELHVRD S+ + +G YL T + + G +K
Sbjct: 337 KKWN--TNKKPKLKNPEDAIIYELHVRDLSIQPESGIKQ-KGKYLGVTEKGTKGPEGVKT 393
Query: 377 ----LSNAGLTHVHLLPTFQFAGVDDRKEN 402
+ + G+THV LLP F +A V++ K N
Sbjct: 394 GLDHMKDLGVTHVQLLPIFDYASVNEEKVN 423
Score = 141 (54.7 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 76/295 (25%), Positives = 123/295 (41%)
Query: 545 EHSTCMNNTA-SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSL 603
E T N T ER ++ + +V Y + D G + ++ +
Sbjct: 501 EDGTFANGTGVGNDTASERTMMRKFMIDSVTYWAKEYNLD--GFRFDLMGIHDYETMNEI 558
Query: 604 TKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGT-GIGSFNDRIRDAMLGGSP 662
K ++ +D SI ++GEGWD + A+Q N GI FND IRD L GS
Sbjct: 559 RKAVNQID-PSIILHGEGWDLNTPL--AAELKANQKNAEKMKGIAHFNDNIRDG-LKGSV 614
Query: 663 FGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKV 722
F + GFV G +E M +D I+ G+ A + D+ TNS +
Sbjct: 615 FEEK-ENGFVNG---------------KENM----EDRIKKGITAGI-DYD-TNSSTYQ- 651
Query: 723 KGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFD---------VVSLKGIPFFHCGDE 773
+V TY + L + + + D+E + +++ +GIPF H G E
Sbjct: 652 DPEQVLTYVEAHDNHTLW--DKLELTNPGDSEEVRKQIHKLSSSILLTSQGIPFLHAGQE 709
Query: 774 ILRSKSLDRDSYNSGDWLNRIDFSYNS--NNWGVGLPPKEKNEKNWPLIRPRLAD 826
+R+K D +SY S D +N++D+ + NN + + K +P R A+
Sbjct: 710 FMRTKYGDHNSYKSPDSINQMDWLRRATFNNEVDYMKGLIELRKKYPAFRMTSAE 764
Score = 40 (19.1 bits), Expect = 1.2e-49, Sum P(3) = 1.2e-49
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 846 VLRIRYSSPLFRLRTANAIQERICF 870
++ +R P FR+ +A I+ + F
Sbjct: 748 LIELRKKYPAFRMTSAEQIKTHVSF 772
>UNIPROTKB|Q81KP1 [details] [associations]
symbol:BAS4597 "Putative pullulanase" species:1392
"Bacillus anthracis" [GO:0004556 "alpha-amylase activity"
evidence=ISS] [GO:0005975 "carbohydrate metabolic process"
evidence=ISS] InterPro:IPR004193 InterPro:IPR006047
InterPro:IPR013781 InterPro:IPR015902 Pfam:PF00128 Pfam:PF02922
Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13 GO:GO:0005975
PANTHER:PTHR10357 CAZy:CBM48 InterPro:IPR014756 SUPFAM:SSF81296
GO:GO:0004556 RefSeq:NP_847150.1 RefSeq:YP_021599.1
RefSeq:YP_030843.1 ProteinModelPortal:Q81KP1 IntAct:Q81KP1
DNASU:1085682 EnsemblBacteria:EBBACT00000009751
EnsemblBacteria:EBBACT00000017737 EnsemblBacteria:EBBACT00000021503
GeneID:1085682 GeneID:2818501 GeneID:2850415 KEGG:ban:BA_4953
KEGG:bar:GBAA_4953 KEGG:bat:BAS4597 HOGENOM:HOG000059883 KO:K01200
OMA:YNRIVEC ProtClustDB:CLSK873560
BioCyc:BANT260799:GJAJ-4653-MONOMER
BioCyc:BANT261594:GJ7F-4811-MONOMER InterPro:IPR011840
TIGRFAMs:TIGR02104 Uniprot:Q81KP1
Length = 713
Score = 318 (117.0 bits), Expect = 4.6e-47, Sum P(4) = 4.6e-47
Identities = 73/214 (34%), Positives = 114/214 (53%)
Query: 463 YNWGYNPVLWGVPKGSYASNPNGSC-RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF 521
YNWGYNP+ + P G YA+NP+ R +E +++++ + G+ V++DVVYNH+
Sbjct: 289 YNWGYNPLYYNAPTGFYATNPSDPYNRILECKQLIETFHEHGIRVIIDVVYNHVYER--- 345
Query: 522 DDNSVLDKVVPGYYLRRNSDGFIEHSTCM-NNTASEHYMVERLIIDDLLCWAVNYKVDGF 580
+ S +K+VPGYY R +G + T + N+ ASE M+ + I++ +L W Y VDGF
Sbjct: 346 -ELSSFEKLVPGYYFRHGENGMPSNGTGVGNDIASERKMMRKFIVESILYWLTEYNVDGF 404
Query: 581 RFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFN 640
RFDLMG + T ++ + KE+ + ++ + GEGWD + N
Sbjct: 405 RFDLMGILDVDT-------INIIEKEVRNIKRDALLL-GEGWDLQTPLPLEEKATLNNAN 456
Query: 641 LSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTG 674
I FND+ RD + GS F ++GF G
Sbjct: 457 KM-PHIAQFNDQFRDG-IKGSTFHIN-KRGFAFG 487
Score = 203 (76.5 bits), Expect = 4.6e-47, Sum P(4) = 4.6e-47
Identities = 66/229 (28%), Positives = 118/229 (51%)
Query: 183 VADRKCSDATGLQLPGIL-----DELFSYDGP-LGALYAEETVSLYLWAPTAQSVSACIY 236
V D + ++ T LQ+ ++ DE + Y+G LGA+Y +E + +WAPTA+ IY
Sbjct: 73 VRDER-NEETDLQIGAVIRTEIFDEKYYYEGTDLGAVYQKEATTFKVWAPTARLAKVRIY 131
Query: 237 RDPLGGNPLEVVQLKENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARG 296
+ E+ +E +GVW+ G Y + V + + + E A DPYA+
Sbjct: 132 KSDKEYTDHEMH--REENGVWAHTLQGDLAGEKYTFLVCI---NLIWNE---AVDPYAKS 183
Query: 297 LSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDF 356
++ +G+ ++++L+ + + ++L P + + +D +YELH+RD ++ + +
Sbjct: 184 VTVNGKYGVVIDLEKTNVTKQ--EQL----PPLQAMTDAILYELHIRDATIHEGS-GVSK 236
Query: 357 RGGYLAF-----TLQNSA--GVSHLKKLSNAGLTHVHLLPTFQFAGVDD 398
+G Y T +N G+SH+K L G+THV LLP + F GVD+
Sbjct: 237 KGTYKGLMEEGTTGRNGTLTGLSHIKDL---GVTHVELLPLYCFGGVDE 282
Score = 93 (37.8 bits), Expect = 4.6e-47, Sum P(4) = 4.6e-47
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 759 VVSLKGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDF 796
V+ +GIPF H G E R+K + +SYN+ D +N++D+
Sbjct: 556 VILSQGIPFLHAGQEFYRTKQGNENSYNANDEINQLDW 593
Score = 51 (23.0 bits), Expect = 4.6e-47, Sum P(4) = 4.6e-47
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 832 QKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHE 891
+K + + ++ IR FRL+ A+ I++ + F T P V+ +E
Sbjct: 595 RKEKEIETVNYIKGLIAIRKEHGAFRLQNADLIKKHMTFLQTSPE----VLAYHLEHVES 650
Query: 892 GVPGLSQLDSNYSYIVVIFNSS 913
P + IVV+FNSS
Sbjct: 651 FGP--------WKEIVVLFNSS 664
>TIGR_CMR|BA_4953 [details] [associations]
symbol:BA_4953 "pullulanase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0004556 "alpha-amylase activity"
evidence=ISS] [GO:0005975 "carbohydrate metabolic process"
evidence=ISS] InterPro:IPR004193 InterPro:IPR006047
InterPro:IPR013781 InterPro:IPR015902 Pfam:PF00128 Pfam:PF02922
Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13 GO:GO:0005975
PANTHER:PTHR10357 CAZy:CBM48 InterPro:IPR014756 SUPFAM:SSF81296
GO:GO:0004556 RefSeq:NP_847150.1 RefSeq:YP_021599.1
RefSeq:YP_030843.1 ProteinModelPortal:Q81KP1 IntAct:Q81KP1
DNASU:1085682 EnsemblBacteria:EBBACT00000009751
EnsemblBacteria:EBBACT00000017737 EnsemblBacteria:EBBACT00000021503
GeneID:1085682 GeneID:2818501 GeneID:2850415 KEGG:ban:BA_4953
KEGG:bar:GBAA_4953 KEGG:bat:BAS4597 HOGENOM:HOG000059883 KO:K01200
OMA:YNRIVEC ProtClustDB:CLSK873560
BioCyc:BANT260799:GJAJ-4653-MONOMER
BioCyc:BANT261594:GJ7F-4811-MONOMER InterPro:IPR011840
TIGRFAMs:TIGR02104 Uniprot:Q81KP1
Length = 713
Score = 318 (117.0 bits), Expect = 4.6e-47, Sum P(4) = 4.6e-47
Identities = 73/214 (34%), Positives = 114/214 (53%)
Query: 463 YNWGYNPVLWGVPKGSYASNPNGSC-RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF 521
YNWGYNP+ + P G YA+NP+ R +E +++++ + G+ V++DVVYNH+
Sbjct: 289 YNWGYNPLYYNAPTGFYATNPSDPYNRILECKQLIETFHEHGIRVIIDVVYNHVYER--- 345
Query: 522 DDNSVLDKVVPGYYLRRNSDGFIEHSTCM-NNTASEHYMVERLIIDDLLCWAVNYKVDGF 580
+ S +K+VPGYY R +G + T + N+ ASE M+ + I++ +L W Y VDGF
Sbjct: 346 -ELSSFEKLVPGYYFRHGENGMPSNGTGVGNDIASERKMMRKFIVESILYWLTEYNVDGF 404
Query: 581 RFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFN 640
RFDLMG + T ++ + KE+ + ++ + GEGWD + N
Sbjct: 405 RFDLMGILDVDT-------INIIEKEVRNIKRDALLL-GEGWDLQTPLPLEEKATLNNAN 456
Query: 641 LSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTG 674
I FND+ RD + GS F ++GF G
Sbjct: 457 KM-PHIAQFNDQFRDG-IKGSTFHIN-KRGFAFG 487
Score = 203 (76.5 bits), Expect = 4.6e-47, Sum P(4) = 4.6e-47
Identities = 66/229 (28%), Positives = 118/229 (51%)
Query: 183 VADRKCSDATGLQLPGIL-----DELFSYDGP-LGALYAEETVSLYLWAPTAQSVSACIY 236
V D + ++ T LQ+ ++ DE + Y+G LGA+Y +E + +WAPTA+ IY
Sbjct: 73 VRDER-NEETDLQIGAVIRTEIFDEKYYYEGTDLGAVYQKEATTFKVWAPTARLAKVRIY 131
Query: 237 RDPLGGNPLEVVQLKENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARG 296
+ E+ +E +GVW+ G Y + V + + + E A DPYA+
Sbjct: 132 KSDKEYTDHEMH--REENGVWAHTLQGDLAGEKYTFLVCI---NLIWNE---AVDPYAKS 183
Query: 297 LSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDF 356
++ +G+ ++++L+ + + ++L P + + +D +YELH+RD ++ + +
Sbjct: 184 VTVNGKYGVVIDLEKTNVTKQ--EQL----PPLQAMTDAILYELHIRDATIHEGS-GVSK 236
Query: 357 RGGYLAF-----TLQNSA--GVSHLKKLSNAGLTHVHLLPTFQFAGVDD 398
+G Y T +N G+SH+K L G+THV LLP + F GVD+
Sbjct: 237 KGTYKGLMEEGTTGRNGTLTGLSHIKDL---GVTHVELLPLYCFGGVDE 282
Score = 93 (37.8 bits), Expect = 4.6e-47, Sum P(4) = 4.6e-47
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 759 VVSLKGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDF 796
V+ +GIPF H G E R+K + +SYN+ D +N++D+
Sbjct: 556 VILSQGIPFLHAGQEFYRTKQGNENSYNANDEINQLDW 593
Score = 51 (23.0 bits), Expect = 4.6e-47, Sum P(4) = 4.6e-47
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 832 QKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHE 891
+K + + ++ IR FRL+ A+ I++ + F T P V+ +E
Sbjct: 595 RKEKEIETVNYIKGLIAIRKEHGAFRLQNADLIKKHMTFLQTSPE----VLAYHLEHVES 650
Query: 892 GVPGLSQLDSNYSYIVVIFNSS 913
P + IVV+FNSS
Sbjct: 651 FGP--------WKEIVVLFNSS 664
>TAIR|locus:2122343 [details] [associations]
symbol:ISA3 "isoamylase 3" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds"
evidence=IEA] [GO:0004556 "alpha-amylase activity" evidence=ISS]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0043169 "cation
binding" evidence=IEA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0009569 "chloroplast starch grain" evidence=IDA]
[GO:0005983 "starch catabolic process" evidence=IMP] [GO:0019156
"isoamylase activity" evidence=IDA] [GO:0000272 "polysaccharide
catabolic process" evidence=RCA] [GO:0005982 "starch metabolic
process" evidence=RCA] [GO:0009664 "plant-type cell wall
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR004193 InterPro:IPR006047
InterPro:IPR013781 InterPro:IPR015902 Pfam:PF00128 Pfam:PF02922
UniPathway:UPA00153 InterPro:IPR013780 GO:GO:0009570
Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13 Gene3D:2.60.40.1180
PANTHER:PTHR10357 CAZy:CBM48 GO:GO:0005983 InterPro:IPR014756
SUPFAM:SSF81296 EMBL:AL161513 eggNOG:COG1523 HOGENOM:HOG000239197
KO:K02438 HSSP:P10342 GO:GO:0019156 EMBL:AY091058 EMBL:AY133739
EMBL:AK227049 IPI:IPI00519580 PIR:B85091 RefSeq:NP_192641.2
UniGene:At.33717 ProteinModelPortal:Q9M0S5 SMR:Q9M0S5 STRING:Q9M0S5
PaxDb:Q9M0S5 PRIDE:Q9M0S5 EnsemblPlants:AT4G09020.1 GeneID:826481
KEGG:ath:AT4G09020 TAIR:At4g09020 InParanoid:Q8RWW6 OMA:VPTVWPG
PhylomeDB:Q9M0S5 ProtClustDB:CLSN2915032
BioCyc:ARA:AT4G09020-MONOMER BioCyc:MetaCyc:AT4G09020-MONOMER
Genevestigator:Q9M0S5 GO:GO:0009569 Uniprot:Q9M0S5
Length = 764
Score = 216 (81.1 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 71/232 (30%), Positives = 108/232 (46%)
Query: 440 LEKLPP-DSTEQQAQITAIQNDDGYN-WGYNPVLWGVPKGSYASNPNGSCRTI-EFRRMV 496
+E LP + E + Q + D N WGY+ V + P YAS + EF+ MV
Sbjct: 280 VELLPVFEFDELELQRRSNPRDHMVNTWGYSTVNFFAPMSRYASGEGDPIKASKEFKEMV 339
Query: 497 QALNHIGLHVVLDVVYNHLQGSG---PFDDN-SVLDKVVPGYYLRRNSDGFIEHSTCMNN 552
+AL+ G+ V+LDVVYNH + P+ + +D V YY+ ++ + S C N
Sbjct: 340 KALHSAGIEVILDVVYNHTNEADDKYPYTTSFRGIDNKV--YYMLDPNNQLLNFSGCGNT 397
Query: 553 TASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKST---MMKAKHALHSLTKEIHG 609
H +V LI+D L W Y VDGFRFDL + ++T + A + ++ K+
Sbjct: 398 LNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRATDGSPLSAPPLIRAIAKD--S 455
Query: 610 VDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGS 661
V S I E WD G + G+ N ++ G + D +R + G S
Sbjct: 456 VL-SRCKIIAEPWDCGGLYLVGKFPNWDRW---AEWNGMYRDDVRRFIKGDS 503
Score = 98 (39.6 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 56/219 (25%), Positives = 94/219 (42%)
Query: 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLE---VVQLKENDGVWSIKGPKSW 265
PLG ++ ++ L++ A SV+ C+ G + + +++L + V K +W
Sbjct: 92 PLGVSQVDKGINFALFSQNATSVTLCLSLSQSGKDDTDDDGMIELVLDPSV--NKTGDTW 149
Query: 266 EGCY-------YVYEVSVYHPSALQIEKCYAN-----DPYAR---GLSSDGRRT-----L 305
C +Y V P Q + DPYA+ G SS G +
Sbjct: 150 HICVEDLPLNNVLYGYRVDGPGEWQQGHRFDRSILLLDPYAKLVKGHSSFGDSSQKFAQF 209
Query: 306 LVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHT-VHPDFRGGYLAFT 364
D ++ P W Y+ P+I D+ IYE++VR F+ + + + P G YL F
Sbjct: 210 YGTYDFES-SPFDWGD-DYKFPNIPE-KDLVIYEMNVRAFTADESSGMDPAIGGSYLGFI 266
Query: 365 LQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVD-DRKEN 402
+ + HL+ L G+ V LLP F+F ++ R+ N
Sbjct: 267 EK----IPHLQDL---GINAVELLPVFEFDELELQRRSN 298
Score = 51 (23.0 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 722 VKGSEVKTYDGTPVAYALC---PTETISYVSAHDNETLFDVVS 761
+KGS G+ Y + P +++V AHD TL D+VS
Sbjct: 505 MKGSFATRVSGSSDLYQVNQRKPYHGVNFVIAHDGFTLRDLVS 547
Score = 43 (20.2 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 146 GGLPANVIEKFPHIRD 161
GG IEK PH++D
Sbjct: 259 GGSYLGFIEKIPHLQD 274
>UNIPROTKB|Q9KKS1 [details] [associations]
symbol:VC_A1029 "Glycogen operon protein GlgX"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005977 "glycogen
metabolic process" evidence=ISS] InterPro:IPR004193
InterPro:IPR006047 InterPro:IPR011837 InterPro:IPR013781
InterPro:IPR015902 Pfam:PF00128 Pfam:PF02922 InterPro:IPR013780
Gene3D:2.60.40.10 InterPro:IPR013783 GO:GO:0043169
Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13
Gene3D:2.60.40.1180 PANTHER:PTHR10357 GO:GO:0004553 CAZy:CBM48
GO:GO:0005977 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014756 SUPFAM:SSF81296 GO:GO:0005980 HSSP:P07762
KO:K02438 PANTHER:PTHR10357:SF74 TIGRFAMs:TIGR02100 GO:GO:0004133
OMA:TWDGLGT PIR:D82388 RefSeq:NP_233413.1 ProteinModelPortal:Q9KKS1
DNASU:2612208 GeneID:2612208 KEGG:vch:VCA1029 PATRIC:20086574
ProtClustDB:CLSK869885 Uniprot:Q9KKS1
Length = 656
Score = 214 (80.4 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 62/196 (31%), Positives = 93/196 (47%)
Query: 465 WGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHL-QG--SGPF 521
WGYNP ++ P YAS + E + ++ L+ G+ V+LDVVYNH +G +GP
Sbjct: 201 WGYNPYVFMAPDPRYASKDAVN----ELKTTIRELHRNGIQVILDVVYNHTAEGGTNGPV 256
Query: 522 DDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFR 581
+ LD P YYL + D + ++ C N + L++D L CW Y++DGFR
Sbjct: 257 FNLKALD---PNYYLH-HGDHYANYTGCGNTVDLSNQAALNLVMDTLRCWVTEYQIDGFR 312
Query: 582 FDLMGHIMKSTMMKAKHALHSLTKEIHGVDG--SSIYIYGEGWDFGEVAKNGRGVNASQF 639
FDL + + +K A + K + D + + E WD G NG V F
Sbjct: 313 FDLAATLGRRGDEFSKEA--AFFKAV-AQDPVLREVKLIAEPWDIGP---NGYQVGNFPF 366
Query: 640 NLSGTGIGSFNDRIRD 655
+ T ND++RD
Sbjct: 367 GWNET-----NDKLRD 377
Score = 64 (27.6 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 40/167 (23%), Positives = 62/167 (37%)
Query: 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK-ENDGVWSIKGPKSWEG 267
PLGA E + ++AP + + ++ E QL+ E GV G
Sbjct: 10 PLGATLDAEGCNFAIYAPANRDILLALFH---ADGSYETHQLEHEYAGVKHTHISGIHAG 66
Query: 268 CYYVYEVSVYHPSALQIEKCYANDPYARGLSS--------DGRRTLLVNLDSDTLKPEGW 319
Y Y + L E Y +DPYAR L D ++ +L + +
Sbjct: 67 QKYGYLIQ------LNDELHYISDPYARALEGPLHYAPPFDSHKSF--DLPKCVVTDTHF 118
Query: 320 DKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQ 366
D KP I ++ ++E HV+ + + V RG YL Q
Sbjct: 119 DWQNVAKPRIAR-DEMVLFETHVKGLTQLNPDVEKALRGKYLGLVSQ 164
Score = 54 (24.1 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 744 TISYVSAHDNETLFDVVSLK 763
T++Y++ HD TL D+VS K
Sbjct: 414 TVNYITYHDGFTLQDLVSYK 433
Score = 37 (18.1 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 729 TYDGTPVAYALCPTETISYVSAHDNETLFD 758
T G AY C IS+++ +NET D
Sbjct: 500 TQKGNNNAY--CQDNDISWLNWENNETKQD 527
>TIGR_CMR|VC_A1029 [details] [associations]
symbol:VC_A1029 "glycogen operon protein GlgX" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005977 "glycogen metabolic process" evidence=ISS]
InterPro:IPR004193 InterPro:IPR006047 InterPro:IPR011837
InterPro:IPR013781 InterPro:IPR015902 Pfam:PF00128 Pfam:PF02922
InterPro:IPR013780 Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0043169 Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445
CAZy:GH13 Gene3D:2.60.40.1180 PANTHER:PTHR10357 GO:GO:0004553
CAZy:CBM48 GO:GO:0005977 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014756 SUPFAM:SSF81296 GO:GO:0005980 HSSP:P07762
KO:K02438 PANTHER:PTHR10357:SF74 TIGRFAMs:TIGR02100 GO:GO:0004133
OMA:TWDGLGT PIR:D82388 RefSeq:NP_233413.1 ProteinModelPortal:Q9KKS1
DNASU:2612208 GeneID:2612208 KEGG:vch:VCA1029 PATRIC:20086574
ProtClustDB:CLSK869885 Uniprot:Q9KKS1
Length = 656
Score = 214 (80.4 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 62/196 (31%), Positives = 93/196 (47%)
Query: 465 WGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHL-QG--SGPF 521
WGYNP ++ P YAS + E + ++ L+ G+ V+LDVVYNH +G +GP
Sbjct: 201 WGYNPYVFMAPDPRYASKDAVN----ELKTTIRELHRNGIQVILDVVYNHTAEGGTNGPV 256
Query: 522 DDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFR 581
+ LD P YYL + D + ++ C N + L++D L CW Y++DGFR
Sbjct: 257 FNLKALD---PNYYLH-HGDHYANYTGCGNTVDLSNQAALNLVMDTLRCWVTEYQIDGFR 312
Query: 582 FDLMGHIMKSTMMKAKHALHSLTKEIHGVDG--SSIYIYGEGWDFGEVAKNGRGVNASQF 639
FDL + + +K A + K + D + + E WD G NG V F
Sbjct: 313 FDLAATLGRRGDEFSKEA--AFFKAV-AQDPVLREVKLIAEPWDIGP---NGYQVGNFPF 366
Query: 640 NLSGTGIGSFNDRIRD 655
+ T ND++RD
Sbjct: 367 GWNET-----NDKLRD 377
Score = 64 (27.6 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 40/167 (23%), Positives = 62/167 (37%)
Query: 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK-ENDGVWSIKGPKSWEG 267
PLGA E + ++AP + + ++ E QL+ E GV G
Sbjct: 10 PLGATLDAEGCNFAIYAPANRDILLALFH---ADGSYETHQLEHEYAGVKHTHISGIHAG 66
Query: 268 CYYVYEVSVYHPSALQIEKCYANDPYARGLSS--------DGRRTLLVNLDSDTLKPEGW 319
Y Y + L E Y +DPYAR L D ++ +L + +
Sbjct: 67 QKYGYLIQ------LNDELHYISDPYARALEGPLHYAPPFDSHKSF--DLPKCVVTDTHF 118
Query: 320 DKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQ 366
D KP I ++ ++E HV+ + + V RG YL Q
Sbjct: 119 DWQNVAKPRIAR-DEMVLFETHVKGLTQLNPDVEKALRGKYLGLVSQ 164
Score = 54 (24.1 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 744 TISYVSAHDNETLFDVVSLK 763
T++Y++ HD TL D+VS K
Sbjct: 414 TVNYITYHDGFTLQDLVSYK 433
Score = 37 (18.1 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 729 TYDGTPVAYALCPTETISYVSAHDNETLFD 758
T G AY C IS+++ +NET D
Sbjct: 500 TQKGNNNAY--CQDNDISWLNWENNETKQD 527
>UNIPROTKB|Q8EGU6 [details] [associations]
symbol:glgX "Glycogen isoamylase GlgX" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR004193 InterPro:IPR006047
InterPro:IPR011837 InterPro:IPR013781 InterPro:IPR015902
Pfam:PF00128 Pfam:PF02922 InterPro:IPR013780 Gene3D:2.60.40.10
InterPro:IPR013783 GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 Gene3D:2.60.40.1180
PANTHER:PTHR10357 GO:GO:0004553 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014756 SUPFAM:SSF81296
GO:GO:0005980 HOGENOM:HOG000239197 KO:K02438 PANTHER:PTHR10357:SF74
TIGRFAMs:TIGR02100 HSSP:P10342 GO:GO:0004133 RefSeq:NP_717112.1
ProteinModelPortal:Q8EGU6 GeneID:1169306 KEGG:son:SO_1495
PATRIC:23522634 OMA:TWDGLGT ProtClustDB:CLSK906290 Uniprot:Q8EGU6
Length = 750
Score = 193 (73.0 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 92/346 (26%), Positives = 139/346 (40%)
Query: 465 WGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNH-LQGS--GPF 521
WGYN + + P+ SY S+ + IEFR MV AL+ G+ V+LDVVYNH +GS GP
Sbjct: 251 WGYNSIGFFAPEPSYLSSED----IIEFRTMVDALHGAGIEVILDVVYNHSAEGSRLGPT 306
Query: 522 DDNSVLDKVVPGYY-LRRNSDGFIEHSTCMNNTAS-EHYMVERLIIDDLLCWAVNYKVDG 579
+D + YY L N F + T NT + H + +L++D L W VDG
Sbjct: 307 FSFRGIDNL--SYYRLHPNDKRFYINDTGCGNTLNLNHPRMLQLVLDSLRYWVKVMGVDG 364
Query: 580 FRFDLMGHIMKST--MMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNAS 637
FRFDL + + +L ++ + + E WD G G G
Sbjct: 365 FRFDLAASLGREAYGFDPGSGFFDALLQD---PVLCRVKLIAEPWDIGP----G-GYQLG 416
Query: 638 QFNLSGTGIGSFNDRIRDAML----GGSPFGPPLQQGFV-TGLLLQPNGHDHGTKAVEEQ 692
F ++ +NDR RD M G P + F +G + +G A
Sbjct: 417 NFPVA---FSEWNDRYRDTMRRFWRGDHGMLPEFARRFHGSGDFFEHSGRP---PAASIN 470
Query: 693 MLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHD 752
L + L + N E N+ G V A + + A
Sbjct: 471 FLTSHDGFTLKDLVSYCERHNWANGEENR-DGHHANFSYHYGVEGASNDVSVL-VLRARQ 528
Query: 753 NETLFDVVSL-KGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFS 797
L + L +G+P GDE R++ + ++Y + +N D+S
Sbjct: 529 QRNLLTTLFLSQGVPMLLSGDETGRTQGGNNNAYCQDNPMNWFDWS 574
Score = 67 (28.6 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 303 RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLA 362
R LL +S ++P + P L IYE+H++ F+ + RG +
Sbjct: 157 RPLLAAAESQAIRPLS----PHRNP--LPIEQCIIYEMHLKGFTALHPEIDVPLRGTFAG 210
Query: 363 FTLQNSAGVSHLKKLSNAGLTHVHLLPTFQF 393
L + A + +L KL G+ V LLP F
Sbjct: 211 --LASKAAIDYLVKL---GVNCVELLPIQAF 236
Score = 63 (27.2 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 27/94 (28%), Positives = 38/94 (40%)
Query: 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKEN-DGVWSIKGPKSWEG 267
PLGA + V+ L++ A V C++ D G ++ + L E +W + G
Sbjct: 24 PLGATVDDGGVNFALFSAHATGVELCLF-DAQGKVEIQRIALTEQTQQIWHLYVHGLCAG 82
Query: 268 CYYVYEV-SVYHPSA---LQIEKCYANDPYARGL 297
Y Y V Y P K DPYAR L
Sbjct: 83 QLYGYRVYGPYEPQLGHRFNPHKLLL-DPYARQL 115
>TIGR_CMR|SO_1495 [details] [associations]
symbol:SO_1495 "glycogen operon protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005977 "glycogen metabolic process" evidence=ISS]
InterPro:IPR004193 InterPro:IPR006047 InterPro:IPR011837
InterPro:IPR013781 InterPro:IPR015902 Pfam:PF00128 Pfam:PF02922
InterPro:IPR013780 Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0043169 Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445
Gene3D:2.60.40.1180 PANTHER:PTHR10357 GO:GO:0004553 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014756 SUPFAM:SSF81296
GO:GO:0005980 HOGENOM:HOG000239197 KO:K02438 PANTHER:PTHR10357:SF74
TIGRFAMs:TIGR02100 HSSP:P10342 GO:GO:0004133 RefSeq:NP_717112.1
ProteinModelPortal:Q8EGU6 GeneID:1169306 KEGG:son:SO_1495
PATRIC:23522634 OMA:TWDGLGT ProtClustDB:CLSK906290 Uniprot:Q8EGU6
Length = 750
Score = 193 (73.0 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 92/346 (26%), Positives = 139/346 (40%)
Query: 465 WGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNH-LQGS--GPF 521
WGYN + + P+ SY S+ + IEFR MV AL+ G+ V+LDVVYNH +GS GP
Sbjct: 251 WGYNSIGFFAPEPSYLSSED----IIEFRTMVDALHGAGIEVILDVVYNHSAEGSRLGPT 306
Query: 522 DDNSVLDKVVPGYY-LRRNSDGFIEHSTCMNNTAS-EHYMVERLIIDDLLCWAVNYKVDG 579
+D + YY L N F + T NT + H + +L++D L W VDG
Sbjct: 307 FSFRGIDNL--SYYRLHPNDKRFYINDTGCGNTLNLNHPRMLQLVLDSLRYWVKVMGVDG 364
Query: 580 FRFDLMGHIMKST--MMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNAS 637
FRFDL + + +L ++ + + E WD G G G
Sbjct: 365 FRFDLAASLGREAYGFDPGSGFFDALLQD---PVLCRVKLIAEPWDIGP----G-GYQLG 416
Query: 638 QFNLSGTGIGSFNDRIRDAML----GGSPFGPPLQQGFV-TGLLLQPNGHDHGTKAVEEQ 692
F ++ +NDR RD M G P + F +G + +G A
Sbjct: 417 NFPVA---FSEWNDRYRDTMRRFWRGDHGMLPEFARRFHGSGDFFEHSGRP---PAASIN 470
Query: 693 MLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHD 752
L + L + N E N+ G V A + + A
Sbjct: 471 FLTSHDGFTLKDLVSYCERHNWANGEENR-DGHHANFSYHYGVEGASNDVSVL-VLRARQ 528
Query: 753 NETLFDVVSL-KGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFS 797
L + L +G+P GDE R++ + ++Y + +N D+S
Sbjct: 529 QRNLLTTLFLSQGVPMLLSGDETGRTQGGNNNAYCQDNPMNWFDWS 574
Score = 67 (28.6 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 303 RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLA 362
R LL +S ++P + P L IYE+H++ F+ + RG +
Sbjct: 157 RPLLAAAESQAIRPLS----PHRNP--LPIEQCIIYEMHLKGFTALHPEIDVPLRGTFAG 210
Query: 363 FTLQNSAGVSHLKKLSNAGLTHVHLLPTFQF 393
L + A + +L KL G+ V LLP F
Sbjct: 211 --LASKAAIDYLVKL---GVNCVELLPIQAF 236
Score = 63 (27.2 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 27/94 (28%), Positives = 38/94 (40%)
Query: 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKEN-DGVWSIKGPKSWEG 267
PLGA + V+ L++ A V C++ D G ++ + L E +W + G
Sbjct: 24 PLGATVDDGGVNFALFSAHATGVELCLF-DAQGKVEIQRIALTEQTQQIWHLYVHGLCAG 82
Query: 268 CYYVYEV-SVYHPSA---LQIEKCYANDPYARGL 297
Y Y V Y P K DPYAR L
Sbjct: 83 QLYGYRVYGPYEPQLGHRFNPHKLLL-DPYARQL 115
>UNIPROTKB|P15067 [details] [associations]
symbol:glgX species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0043169 "cation binding" evidence=IEA] [GO:0005980 "glycogen
catabolic process" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0005977 "glycogen metabolic process"
evidence=IEA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0004135 "amylo-alpha-1,6-glucosidase activity"
evidence=IDA] [GO:0004133 "glycogen debranching enzyme activity"
evidence=IMP] HAMAP:MF_01248 InterPro:IPR004193 InterPro:IPR006047
InterPro:IPR011837 InterPro:IPR013781 InterPro:IPR015902
InterPro:IPR022844 Pfam:PF00128 Pfam:PF02922 UniPathway:UPA00165
Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043169
Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13
PANTHER:PTHR10357 EMBL:U18997 CAZy:CBM48 GO:GO:0006974
InterPro:IPR014756 SUPFAM:SSF81296 GO:GO:0005980 GO:GO:0004135
EMBL:J01616 PIR:B65139 RefSeq:NP_417889.1 RefSeq:YP_492002.1
PDB:2WSK PDBsum:2WSK ProteinModelPortal:P15067 SMR:P15067
IntAct:P15067 EnsemblBacteria:EBESCT00000000066
EnsemblBacteria:EBESCT00000017349 GeneID:12934523 GeneID:947941
KEGG:ecj:Y75_p3746 KEGG:eco:b3431 PATRIC:32122302 EchoBASE:EB0376
EcoGene:EG10381 eggNOG:COG1523 HOGENOM:HOG000239197 KO:K02438
OMA:HPVMIAY ProtClustDB:PRK03705 BioCyc:EcoCyc:EG10381-MONOMER
BioCyc:ECOL316407:JW3394-MONOMER BioCyc:MetaCyc:EG10381-MONOMER
EvolutionaryTrace:P15067 Genevestigator:P15067
PANTHER:PTHR10357:SF74 TIGRFAMs:TIGR02100 Uniprot:P15067
Length = 657
Score = 161 (61.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 97/376 (25%), Positives = 150/376 (39%)
Query: 440 LEKLPPD--STEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQ 497
LE LP ++E + Q + N Y WGYNPV +YA +P + EFR ++
Sbjct: 196 LELLPVAQFASEPRLQRMGLSN---Y-WGYNPVAMFALHPAYACSPETALD--EFRDAIK 249
Query: 498 ALNHIGLHVVLDVVYNH---LQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTA 554
AL+ G+ V+LD+V NH L GP +D YY R + + C N
Sbjct: 250 ALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDN--RSYYWIREDGDYHNWTGCGNTLN 307
Query: 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSS 614
H V L W VDGFRFDL + ++ + L + + + S
Sbjct: 308 LSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVL--SQ 365
Query: 615 IYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLG-GSPFGPPLQQGFVT 673
+ + E WD +A G V N +ND RDA + PL G
Sbjct: 366 VKLIAEPWD---IAPGGYQVG----NFPPL-FAEWNDHFRDAARRFWLHYDLPL--GAFA 415
Query: 674 GLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGT 733
G + D + ++ +AA + + LRD N + N+ G E + DGT
Sbjct: 416 GRFAASS--DVFKR--NGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENR--DGT 469
Query: 734 PVAYALCPTE-----TISYVSAH-DN-ETLFDVVSL-KGIPFFHCGDEILRSKSLDRDSY 785
Y+ + ++ V D+ L + L +G P GDE S+ + ++Y
Sbjct: 470 NNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAY 529
Query: 786 NSGDWLNRIDFSYNSN 801
+ L +D+S S+
Sbjct: 530 CQDNQLTWLDWSQASS 545
Score = 93 (37.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 53/204 (25%), Positives = 86/204 (42%)
Query: 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKENDG-VWSIKGPKSWEG 267
PLGA Y + V+ L++ A+ V C++ D G L + G +W P + G
Sbjct: 11 PLGAHYDGQGVNFTLFSAHAERVELCVF-DANGQE--HRYDLPGHSGDIWHGYLPDARPG 67
Query: 268 CYYVYEV-SVYHPSA---LQIEKCYANDPYARGLSSDGRRTLLVNL--------DSDTLK 315
Y Y V + P+ K DP AR + + + L++ D+ +
Sbjct: 68 LRYGYRVHGPWQPAEGHRFNPAKLLI-DPCARQIDGEFKDNPLLHAGHNEPDYRDNAAIA 126
Query: 316 PEGW---DKLVYEK--PDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAG 370
P+ D +E P + IYE HV+ + + + RG Y A L +
Sbjct: 127 PKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKA--LGHPVM 184
Query: 371 VSHLKKLSNAGLTHVHLLPTFQFA 394
+++LK+L G+T + LLP QFA
Sbjct: 185 INYLKQL---GITALELLPVAQFA 205
>TAIR|locus:2061216 [details] [associations]
symbol:ISA1 "isoamylase 1" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds"
evidence=IEA] [GO:0004556 "alpha-amylase activity" evidence=ISS]
[GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0043169 "cation
binding" evidence=IEA] [GO:0010021 "amylopectin biosynthetic
process" evidence=IMP] [GO:0010368 "chloroplast isoamylase complex"
evidence=IDA] [GO:0019156 "isoamylase activity" evidence=IDA;IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0019252
"starch biosynthetic process" evidence=RCA] [GO:0043085 "positive
regulation of catalytic activity" evidence=RCA] InterPro:IPR004193
InterPro:IPR006047 InterPro:IPR013781 InterPro:IPR015902
Pfam:PF00128 Pfam:PF02922 UniPathway:UPA00152 InterPro:IPR013780
Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 CAZy:GH13 Gene3D:2.60.40.1180
PANTHER:PTHR10357 CAZy:CBM48 InterPro:IPR014756 SUPFAM:SSF81296
EMBL:AF002109 UniGene:At.20831 UniGene:At.71018 GO:GO:0010021
GO:GO:0019252 eggNOG:COG1523 HOGENOM:HOG000239197 KO:K02438
EMBL:BT000443 EMBL:BT010348 IPI:IPI00520721 PIR:B84823
RefSeq:NP_181522.1 HSSP:P10342 ProteinModelPortal:O04196 SMR:O04196
IntAct:O04196 STRING:O04196 PaxDb:O04196 PRIDE:O04196 ProMEX:O04196
EnsemblPlants:AT2G39930.1 GeneID:818580 KEGG:ath:AT2G39930
TAIR:At2g39930 InParanoid:O04196 OMA:HAFVNDQ PhylomeDB:O04196
ProtClustDB:CLSN2683381 BRENDA:3.2.1.68 Genevestigator:O04196
GO:GO:0010368 GO:GO:0019156 Uniprot:O04196
Length = 783
Score = 188 (71.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 98/362 (27%), Positives = 146/362 (40%)
Query: 465 WGYNPVLWGVPKGSYAS--NPNGSCRTI-EFRRMVQALNHIGLHVVLDVVYNHL-QGS-- 518
WGY+ + + P YAS + N + R I EF+ +V+ + G+ V++DVV NH +G+
Sbjct: 288 WGYSTIGFFSPMIRYASASSNNFAGRAINEFKILVKEAHKRGIEVIMDVVLNHTAEGNEK 347
Query: 519 GPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVD 578
GP +D V YY+ F +S C N H +V + I+D L W VD
Sbjct: 348 GPIFSFRGVDNSV--YYMLAPKGEFYNYSGCGNTFNCNHPVVRQFILDCLRYWVTEMHVD 405
Query: 579 GFRFDLMGHIMK--STMMKAKHALHS------LTKE--------IHGVDGSSIY----IY 618
GFRFDL G IM S++ A + + LT I + I +
Sbjct: 406 GFRFDL-GSIMSRSSSLWDAANVYGADVEGDLLTTGTPISCPPVIDMISNDPILRGVKLI 464
Query: 619 GEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQ 678
E WD G + + G + + G F D +R + G F F L
Sbjct: 465 AEAWDAGGLYQVGM---FPHWGIWSEWNGKFRDVVRQFIKGTDGFSG----AFAECLCGS 517
Query: 679 PNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYA 738
PN + G K A D G L D N++ N G E DG Y+
Sbjct: 518 PNLYQGGRKPWHSINFICAHD----GFT--LADLVTYNNKNNLANGEE--NNDGENHNYS 569
Query: 739 L-CPTE----TISYVSAHDNETLFDVVSL---KGIPFFHCGDEILRSKSLDRDSYNSGDW 790
C E +IS + VSL +G+P + GDE +K + ++Y ++
Sbjct: 570 WNCGEEGDFASISVKRLRKRQMRNFFVSLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNY 629
Query: 791 LN 792
+N
Sbjct: 630 MN 631
Score = 171 (65.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 51/140 (36%), Positives = 71/140 (50%)
Query: 457 IQNDDGYN-WGYNPVLWGVPKGSYAS--NPNGSCRTI-EFRRMVQALNHIGLHVVLDVVY 512
I D N WGY+ + + P YAS + N + R I EF+ +V+ + G+ V++DVV
Sbjct: 279 ILGDHRVNFWGYSTIGFFSPMIRYASASSNNFAGRAINEFKILVKEAHKRGIEVIMDVVL 338
Query: 513 NHL-QGS--GPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569
NH +G+ GP +D V YY+ F +S C N H +V + I+D L
Sbjct: 339 NHTAEGNEKGPIFSFRGVDNSV--YYMLAPKGEFYNYSGCGNTFNCNHPVVRQFILDCLR 396
Query: 570 CWAVNYKVDGFRFDLMGHIM 589
W VDGFRFDL G IM
Sbjct: 397 YWVTEMHVDGFRFDL-GSIM 415
Score = 67 (28.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 46/202 (22%), Positives = 84/202 (41%)
Query: 209 PLGALYAEETVSLYLWAPTAQSVSACIYR-DPLGGNPL-EVVQL---KENDG-VWSIKGP 262
P G ++ V+ +++ + S + C+ L N + E +QL + G VW +
Sbjct: 76 PFGPTVRDDGVNFSVYSTNSVSATICLISLSDLRQNKVTEEIQLDPSRNRTGHVWHVFLR 135
Query: 263 KSWEGCYYVYEVS-VYHPSALQIEKCYAN---DPYARGLSSDGRRTLLVNLDS-----DT 313
++ Y Y + P +N DPYA+ + S +L D+
Sbjct: 136 GDFKDMLYGYRFDGKFSPEEGHYYDS-SNILLDPYAKAIISRDEFGVLGPDDNCWPQMAC 194
Query: 314 LKPEGWDKLVYEKPDILSF--SDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGV 371
+ P ++ +E L D+ IYE+HVR F+ + + +F G Y + +
Sbjct: 195 MVPTREEEFDWEGDMHLKLPQKDLVIYEMHVRGFTRHESS-KIEFPGTYQGVAEK----L 249
Query: 372 SHLKKLSNAGLTHVHLLPTFQF 393
HLK+L G+ + L+P +F
Sbjct: 250 DHLKEL---GINCIELMPCHEF 268
>TIGR_CMR|GSU_2358 [details] [associations]
symbol:GSU_2358 "isoamylase family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0016052 "carbohydrate catabolic
process" evidence=ISS] [GO:0019156 "isoamylase activity"
evidence=ISS] InterPro:IPR006047 InterPro:IPR012768
InterPro:IPR013781 InterPro:IPR015902 Pfam:PF00128
PIRSF:PIRSF006337 GO:GO:0005737 Gene3D:2.60.40.10
InterPro:IPR013783 GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 PANTHER:PTHR10357 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014756 SUPFAM:SSF81296
GO:GO:0005992 InterPro:IPR022567 Pfam:PF11941 HOGENOM:HOG000155669
KO:K01236 OMA:YAPDSAY GO:GO:0033942 PANTHER:PTHR10357:SF21
TIGRFAMs:TIGR02402 RefSeq:NP_953405.1 ProteinModelPortal:Q74AJ6
GeneID:2686146 KEGG:gsu:GSU2358 PATRIC:22027565
ProtClustDB:CLSK924601 BioCyc:GSUL243231:GH27-2352-MONOMER
Uniprot:Q74AJ6
Length = 630
Score = 134 (52.2 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 71/278 (25%), Positives = 118/278 (42%)
Query: 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDD 523
NWGY+ V P +Y P+G + +V A + GL V+LDVVYNHL GP +
Sbjct: 160 NWGYDGVFPFAPHHAYGG-PDG------LKSLVDACHRRGLAVILDVVYNHL---GP--E 207
Query: 524 NSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFD 583
+ L P Y+ + + + + S+ V +I + L W Y +DG R D
Sbjct: 208 GNYLHAFAP-YFTDHYRTPWGD-AVNFDGPGSDG--VRHYVIGNALHWISEYHLDGLRLD 263
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVD---GSSIYIYGEGWDFGEVA------KNGRGV 634
+ I A H L +T+ + + G ++++ E D +V G GV
Sbjct: 264 AIHGIYD---FSAGHILRDITRAVDSLARHLGRTVHVIAES-DLNDVRTIAPPESGGHGV 319
Query: 635 NAS---QFNLSGTGI--GSFNDRIRDAMLGGSPFGPPLQQGFV-TGLLLQPNGHDHGTKA 688
+ F+ S + G N D L S ++GFV +G + HG+ +
Sbjct: 320 HTQWCDDFHHSLVTLLTGERNGYYADFGLF-SHLEKAFREGFVYSGEYSRHRRRRHGSPS 378
Query: 689 VEE---QMLAAAKDHIQVGLAANLRDFQLTNSEGNKVK 723
++ +M+ +++H Q+G A L D T ++K
Sbjct: 379 GDQPPRRMVVFSQNHDQIGNRA-LGDRPSTRLSPEQLK 415
Score = 54 (24.1 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 369 AGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLP 410
A V L L G+T + L+P +F G NW G P
Sbjct: 131 AAVERLDYLQELGITALELMPVAEFPG----SRNWGYDGVFP 168
Score = 42 (19.8 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 821 RPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQ 865
R L DP + H + +V+R+R P FR IQ
Sbjct: 484 RSALIDPELRSVGWH-QQVFSFYREVIRLRRQLPSFRRPEREEIQ 527
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 971 942 0.00093 122 3 11 22 0.41 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 630 (67 KB)
Total size of DFA: 491 KB (2227 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 78.17u 0.09s 78.26t Elapsed: 00:00:04
Total cpu time: 78.18u 0.09s 78.27t Elapsed: 00:00:04
Start: Fri May 10 11:04:28 2013 End: Fri May 10 11:04:32 2013