BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002079
(971 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 1124 bits (2907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/908 (60%), Positives = 663/908 (73%), Gaps = 62/908 (6%)
Query: 94 SRAYWVSESIIAWNV-DVPDGSCYLYASRTAALSIS--YGGIQGADVEIELQEDKGGLPA 150
+RAYWV+ +IAWNV ++ S LYASR AA+S+S GGIQG D ++ELQ + GLP
Sbjct: 6 ARAYWVTSDLIAWNVGELEAQSVCLYASRAAAMSLSPSNGGIQGYDSKVELQPESAGLPE 65
Query: 151 NVIEKFPHIRDYKAFKVPAGSDAKLLLKCQLAVA----DRKCSDATGLQLPGILDELFSY 206
V +KFP I Y+AF+VP+ D L+KCQL VA D K D TGLQLPG+LD++F+Y
Sbjct: 66 TVTQKFPFISSYRAFRVPSSVDVASLVKCQLVVASFGADGKHVDVTGLQLPGVLDDMFAY 125
Query: 207 DGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGPKSWE 266
GPLGA+++E++VSL+LWAPTAQ VS C + P G LE VQLKE++GVWS+ GP+ WE
Sbjct: 126 TGPLGAVFSEDSVSLHLWAPTAQGVSVCFFDGP-AGPALETVQLKESNGVWSVTGPREWE 184
Query: 267 GCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEK 326
YY+YEV VYHP+ Q+ KC A DPYAR LS++G RT LV+++++TLKP WD+L EK
Sbjct: 185 NRYYLYEVDVYHPTKAQVLKCLAGDPYARSLSANGARTWLVDINNETLKPASWDELADEK 244
Query: 327 PDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVH 386
P + SFSDI+IYELH+RDFS D TV D RGG+ AF Q SAG+ HL+KLS+AGLTHVH
Sbjct: 245 PKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVH 304
Query: 387 LLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPD 446
LLP+F FAGVDD K NWK F D L PP
Sbjct: 305 LLPSFHFAGVDDIKSNWK-----------------------------FVDECELATFPPG 335
Query: 447 STEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHV 506
S QQA + AIQ +D YNWGYNPVLWGVPKGSYAS+P+G R IE+R+MVQALN IGL V
Sbjct: 336 SDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRV 395
Query: 507 VLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIID 566
V+DVVYNHL SGP +SVLDK+VPGYY+RR+++G IE+S MNNTASEH+MV+RLI+D
Sbjct: 396 VMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVD 455
Query: 567 DLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
DLL WAVNYKVDGFRFDLMGHIMK TMM+AK AL SLT + HGVDGS IY+YGEGWDF E
Sbjct: 456 DLLNWAVNYKVDGFRFDLMGHIMKRTMMRAKSALQSLTTDAHGVDGSKIYLYGEGWDFAE 515
Query: 627 VAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGT 686
VA+N RG+N SQ N+SGTGIGSFNDRIRDA+ GG+PFG PLQQGF TGL L+PNG G
Sbjct: 516 VARNQRGINGSQLNMSGTGIGSFNDRIRDAINGGNPFGNPLQQGFNTGLFLEPNGFYQGN 575
Query: 687 KAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETIS 746
+A + LA D IQ+GLA NLRD+ L + G KGSE+ T+DG PV Y P ETI+
Sbjct: 576 EADTRRSLATYADQIQIGLAGNLRDYVLISHTGEAKKGSEIHTFDGLPVGYTASPIETIN 635
Query: 747 YVSAHDNETLFDVVSLK-------------------------GIPFFHCGDEILRSKSLD 781
YVSAHDNETLFDV+S+K GIPFFH GDEILRSKS+D
Sbjct: 636 YVSAHDNETLFDVISVKTPMILSVDERCRINHLASSMMALSQGIPFFHAGDEILRSKSID 695
Query: 782 RDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALE 841
RDSYNSGDW N++DF+Y +NNWGVGLPP EKNE NWPL++PRL +PSFKP K HILAAL+
Sbjct: 696 RDSYNSGDWFNKLDFTYETNNWGVGLPPSEKNEDNWPLMKPRLENPSFKPAKGHILAALD 755
Query: 842 NFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDS 901
+F D+L+IRYSSPLFRL TAN I++R+ FHNTGPS VPGVIVM IED P ++QLD+
Sbjct: 756 SFVDILKIRYSSPLFRLSTANDIKQRVRFHNTGPSLVPGVIVMGIEDARGESPEMAQLDT 815
Query: 902 NYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRT 961
N+SY+V +FN P EVS PAL +LHP+QV S D +V+ S+YEA +G F +P RT
Sbjct: 816 NFSYVVTVFNVCPHEVSMDIPALASMGFELHPVQVNSSDTLVRKSAYEAATGRFTVPGRT 875
Query: 962 TSVFVEPR 969
SVFVEPR
Sbjct: 876 VSVFVEPR 883
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 520 bits (1338), Expect = e-147, Method: Compositional matrix adjust.
Identities = 326/925 (35%), Positives = 491/925 (53%), Gaps = 84/925 (9%)
Query: 96 AYWVSESIIAWNVDVPDGS----CYLYASRTAALSISYGGIQGADVEIELQEDKGGLPAN 151
A+WV ++ + W P G LY S ++ ++ G + +D ++L +
Sbjct: 22 AHWVDKTTLLW----PGGENKPIVRLYYSHSSKVAADSNG-EFSDKYVKLTPTT--VNQQ 74
Query: 152 VIEKFPHIRDYKAFKVPAGSDAKLLLKCQL----AVADRKCSDATGLQLPGILDELFSYD 207
V +FPH+ Y AFK+P + LL+ + A +D S AT +Q G+LD+ ++
Sbjct: 75 VSMRFPHLASYPAFKLPDDVNVDELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAA 134
Query: 208 GPL---GALYAEETVSLYLWAPTAQSVSACIY---RDPLGGNPLEVVQLKENDGVWSIKG 261
GA + V+ +WAPTAQ V IY + + +P+ G WS +G
Sbjct: 135 AEALSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMT---RDSASGAWSWQG 191
Query: 262 PKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDK 321
+G +Y Y ++VYHP + ++E+ DPYA LS++ + +V+L+ LKPEGWD
Sbjct: 192 GSDLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPEGWDG 251
Query: 322 LV--YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSN 379
L + + + ++I+E H+RD S D TV + RG YLA T Q S V HLK+LS
Sbjct: 252 LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSA 311
Query: 380 AGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439
+G+TH+ LLP F A V++ + + + + S C S + EV
Sbjct: 312 SGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVE-EV 370
Query: 440 LEKLPPDSTEQQAQITA----IQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRM 495
L +L + ++ Q+ A + D YNWGY+P + VP+GSYA++P G+ R EFR M
Sbjct: 371 LTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEFRTM 430
Query: 496 VQALNH-IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRN-SDGFIEHSTCMNNT 553
+QA+ +G++V++DVVYNH +GP D SVLDK+VP YY R N + G +E +TC +++
Sbjct: 431 IQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDS 490
Query: 554 ASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGS 613
A EH M +LI D L W +YK+DGFRFDLM + K+ ++ A + +L +I
Sbjct: 491 APEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDI------ 544
Query: 614 SIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPF--GPPLQQ-- 669
Y +GEGWD + + R ASQ NL GTGIG+F+DR+RDA+ GG PF G L+Q
Sbjct: 545 --YFFGEGWDSNQ---SDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQ 599
Query: 670 GFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKT 729
G +G + PN T ++Q A D ++G+A NL DF L + +G +GSE+
Sbjct: 600 GVGSGAGVLPN---ELTTLSDDQARHLA-DLTRLGMAGNLADFVLIDKDGAVKRGSEID- 654
Query: 730 YDGTPVAYALCPTETISYVSAHDNETLFDVVSLK-------------------------G 764
Y+G P YA PTE ++YVS HDN+TL+D++S K G
Sbjct: 655 YNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQG 714
Query: 765 IPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRL 824
I F G E+LRSKS RDSY+SGDW NR+D+S NN+ VG+P + N+ +I R+
Sbjct: 715 IAFDQQGSELLRSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDII-ARV 773
Query: 825 ADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVM 884
D P ++ + + ++ +R SSPLF L + +R+ F NTG G++VM
Sbjct: 774 KDAVATPGETELKQMTAFYQELTALRKSSPLFTLGDGATVMKRVDFRNTGADQQTGLLVM 833
Query: 885 SIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVK 944
+I+DG + G S LDS IVV N++P + A G +LQL IQ + D +
Sbjct: 834 TIDDGMQA--GAS-LDSRVDGIVVAINAAPESRTLQDFA--GTSLQLSAIQQAAGDRSLA 888
Query: 945 NSSYEANSGCFVIPPRTTSVFVEPR 969
+ A G +P + +V P+
Sbjct: 889 SGVQVAADGSVTLPAWSVAVLELPQ 913
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 520 bits (1338), Expect = e-147, Method: Compositional matrix adjust.
Identities = 326/925 (35%), Positives = 491/925 (53%), Gaps = 84/925 (9%)
Query: 96 AYWVSESIIAWNVDVPDGS----CYLYASRTAALSISYGGIQGADVEIELQEDKGGLPAN 151
A+WV ++ + W P G LY S ++ ++ G + +D ++L +
Sbjct: 16 AHWVDKTTLLW----PGGENKPIVRLYYSHSSKVAADSNG-EFSDKYVKLTPTT--VNQQ 68
Query: 152 VIEKFPHIRDYKAFKVPAGSDAKLLLKCQL----AVADRKCSDATGLQLPGILDELFSYD 207
V +FPH+ Y AFK+P + LL+ + A +D S AT +Q G+LD+ ++
Sbjct: 69 VSMRFPHLASYPAFKLPDDVNVDELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAA 128
Query: 208 GPL---GALYAEETVSLYLWAPTAQSVSACIY---RDPLGGNPLEVVQLKENDGVWSIKG 261
GA + V+ +WAPTAQ V IY + + +P+ G WS +G
Sbjct: 129 AEALSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMT---RDSASGAWSWQG 185
Query: 262 PKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDK 321
+G +Y Y ++VYHP + ++E+ DPYA LS++ + +V+L+ LKPEGWD
Sbjct: 186 GSDLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPEGWDG 245
Query: 322 LV--YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSN 379
L + + + ++I+E H+RD S D TV + RG YLA T Q S V HLK+LS
Sbjct: 246 LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSA 305
Query: 380 AGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439
+G+TH+ LLP F A V++ + + + + S C S + EV
Sbjct: 306 SGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVE-EV 364
Query: 440 LEKLPPDSTEQQAQITA----IQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRM 495
L +L + ++ Q+ A + D YNWGY+P + VP+GSYA++P G+ R EFR M
Sbjct: 365 LTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEFRTM 424
Query: 496 VQALNH-IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRN-SDGFIEHSTCMNNT 553
+QA+ +G++V++DVVYNH +GP D SVLDK+VP YY R N + G +E +TC +++
Sbjct: 425 IQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDS 484
Query: 554 ASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGS 613
A EH M +LI D L W +YK+DGFRFDLM + K+ ++ A + +L +I
Sbjct: 485 APEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDI------ 538
Query: 614 SIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPF--GPPLQQ-- 669
Y +GEGWD + + R ASQ NL GTGIG+F+DR+RDA+ GG PF G L+Q
Sbjct: 539 --YFFGEGWDSNQ---SDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQ 593
Query: 670 GFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKT 729
G +G + PN T ++Q A D ++G+A NL DF L + +G +GSE+
Sbjct: 594 GVGSGAGVLPN---ELTTLSDDQARHLA-DLTRLGMAGNLADFVLIDKDGAVKRGSEID- 648
Query: 730 YDGTPVAYALCPTETISYVSAHDNETLFDVVSLK-------------------------G 764
Y+G P YA PTE ++YVS HDN+TL+D++S K G
Sbjct: 649 YNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQG 708
Query: 765 IPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRL 824
I F G E+LRSKS RDSY+SGDW NR+D+S NN+ VG+P + N+ +I R+
Sbjct: 709 IAFDQQGSELLRSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDII-ARV 767
Query: 825 ADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVM 884
D P ++ + + ++ +R SSPLF L + +R+ F NTG G++VM
Sbjct: 768 KDAVATPGETELKQMTAFYQELTALRKSSPLFTLGDGATVMKRVDFRNTGADQQTGLLVM 827
Query: 885 SIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVK 944
+I+DG + G S LDS IVV N++P + A G +LQL IQ + D +
Sbjct: 828 TIDDGMQA--GAS-LDSRVDGIVVAINAAPESRTLQDFA--GTSLQLSAIQQAAGDRSLA 882
Query: 945 NSSYEANSGCFVIPPRTTSVFVEPR 969
+ A G +P + +V P+
Sbjct: 883 SGVQVAADGSVTLPAWSVAVLELPQ 907
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 520 bits (1338), Expect = e-147, Method: Compositional matrix adjust.
Identities = 326/925 (35%), Positives = 491/925 (53%), Gaps = 84/925 (9%)
Query: 96 AYWVSESIIAWNVDVPDGS----CYLYASRTAALSISYGGIQGADVEIELQEDKGGLPAN 151
A+WV ++ + W P G LY S ++ ++ G + +D ++L +
Sbjct: 18 AHWVDKTTLLW----PGGENKPIVRLYYSHSSKVAADSNG-EFSDKYVKLTPTT--VNQQ 70
Query: 152 VIEKFPHIRDYKAFKVPAGSDAKLLLKCQL----AVADRKCSDATGLQLPGILDELFSYD 207
V +FPH+ Y AFK+P + LL+ + A +D S AT +Q G+LD+ ++
Sbjct: 71 VSMRFPHLASYPAFKLPDDVNVDELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAA 130
Query: 208 GPL---GALYAEETVSLYLWAPTAQSVSACIY---RDPLGGNPLEVVQLKENDGVWSIKG 261
GA + V+ +WAPTAQ V IY + + +P+ G WS +G
Sbjct: 131 AEALSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMT---RDSASGAWSWQG 187
Query: 262 PKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDK 321
+G +Y Y ++VYHP + ++E+ DPYA LS++ + +V+L+ LKPEGWD
Sbjct: 188 GSDLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPEGWDG 247
Query: 322 LV--YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSN 379
L + + + ++I+E H+RD S D TV + RG YLA T Q S V HLK+LS
Sbjct: 248 LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSA 307
Query: 380 AGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439
+G+TH+ LLP F A V++ + + + + S C S + EV
Sbjct: 308 SGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVE-EV 366
Query: 440 LEKLPPDSTEQQAQITA----IQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRM 495
L +L + ++ Q+ A + D YNWGY+P + VP+GSYA++P G+ R EFR M
Sbjct: 367 LTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEFRTM 426
Query: 496 VQALNH-IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRN-SDGFIEHSTCMNNT 553
+QA+ +G++V++DVVYNH +GP D SVLDK+VP YY R N + G +E +TC +++
Sbjct: 427 IQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDS 486
Query: 554 ASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGS 613
A EH M +LI D L W +YK+DGFRFDLM + K+ ++ A + +L +I
Sbjct: 487 APEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDI------ 540
Query: 614 SIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPF--GPPLQQ-- 669
Y +GEGWD + + R ASQ NL GTGIG+F+DR+RDA+ GG PF G L+Q
Sbjct: 541 --YFFGEGWDSNQ---SDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQ 595
Query: 670 GFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKT 729
G +G + PN T ++Q A D ++G+A NL DF L + +G +GSE+
Sbjct: 596 GVGSGAGVLPN---ELTTLSDDQARHLA-DLTRLGMAGNLADFVLIDKDGAVKRGSEID- 650
Query: 730 YDGTPVAYALCPTETISYVSAHDNETLFDVVSLK-------------------------G 764
Y+G P YA PTE ++YVS HDN+TL+D++S K G
Sbjct: 651 YNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQG 710
Query: 765 IPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRL 824
I F G E+LRSKS RDSY+SGDW NR+D+S NN+ VG+P + N+ +I R+
Sbjct: 711 IAFDQQGSELLRSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDII-ARV 769
Query: 825 ADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVM 884
D P ++ + + ++ +R SSPLF L + +R+ F NTG G++VM
Sbjct: 770 KDAVATPGETELKQMTAFYQELTALRKSSPLFTLGDGATVMKRVDFRNTGADQQTGLLVM 829
Query: 885 SIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVK 944
+I+DG + G S LDS IVV N++P + A G +LQL IQ + D +
Sbjct: 830 TIDDGMQA--GAS-LDSRVDGIVVAINAAPESRTLQDFA--GTSLQLSAIQQAAGDRSLA 884
Query: 945 NSSYEANSGCFVIPPRTTSVFVEPR 969
+ A G +P + +V P+
Sbjct: 885 SGVQVAADGSVTLPAWSVAVLELPQ 909
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 326/925 (35%), Positives = 491/925 (53%), Gaps = 84/925 (9%)
Query: 96 AYWVSESIIAWNVDVPDGS----CYLYASRTAALSISYGGIQGADVEIELQEDKGGLPAN 151
A+WV ++ + W P G LY S ++ ++ G + +D ++L +
Sbjct: 179 AHWVDKTTLLW----PGGENKPIVRLYYSHSSKVAADSNG-EFSDKYVKLTPTT--VNQQ 231
Query: 152 VIEKFPHIRDYKAFKVPAGSDAKLLLKCQL----AVADRKCSDATGLQLPGILDELFSYD 207
V +FPH+ Y AFK+P + LL+ + A +D S AT +Q G+LD+ ++
Sbjct: 232 VSMRFPHLASYPAFKLPDDVNVDELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAA 291
Query: 208 GPL---GALYAEETVSLYLWAPTAQSVSACIY---RDPLGGNPLEVVQLKENDGVWSIKG 261
GA + V+ +WAPTAQ V IY + + +P+ G WS +G
Sbjct: 292 AEALSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMT---RDSASGAWSWQG 348
Query: 262 PKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDK 321
+G +Y Y ++VYHP + ++E+ DPYA LS++ + +V+L+ LKPEGWD
Sbjct: 349 GSDLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPEGWDG 408
Query: 322 LV--YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSN 379
L + + + ++I+E H+RD S D TV + RG YLA T Q S V HLK+LS
Sbjct: 409 LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSA 468
Query: 380 AGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439
+G+TH+ LLP F A V++ + + + + S C S + EV
Sbjct: 469 SGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVE-EV 527
Query: 440 LEKLPPDSTEQQAQITA----IQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRM 495
L +L + ++ Q+ A + D YNWGY+P + VP+GSYA++P G+ R EFR M
Sbjct: 528 LTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEFRTM 587
Query: 496 VQALNH-IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRN-SDGFIEHSTCMNNT 553
+QA+ +G++V++DVVYNH +GP D SVLDK+VP YY R N + G +E +TC +++
Sbjct: 588 IQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDS 647
Query: 554 ASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGS 613
A EH M +LI D L W +YK+DGFRFDLM + K+ ++ A + +L +I
Sbjct: 648 APEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDI------ 701
Query: 614 SIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPF--GPPLQQ-- 669
Y +GEGWD + + R ASQ NL GTGIG+F+DR+RDA+ GG PF G L+Q
Sbjct: 702 --YFFGEGWDSNQ---SDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQ 756
Query: 670 GFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKT 729
G +G + PN T ++Q A D ++G+A NL DF L + +G +GSE+
Sbjct: 757 GVGSGAGVLPN---ELTTLSDDQARHLA-DLTRLGMAGNLADFVLIDKDGAVKRGSEID- 811
Query: 730 YDGTPVAYALCPTETISYVSAHDNETLFDVVSLK-------------------------G 764
Y+G P YA PTE ++YVS HDN+TL+D++S K G
Sbjct: 812 YNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQG 871
Query: 765 IPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRL 824
I F G E+LRSKS RDSY+SGDW NR+D+S NN+ VG+P + N+ +I R+
Sbjct: 872 IAFDQQGSELLRSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDII-ARV 930
Query: 825 ADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVM 884
D P ++ + + ++ +R SSPLF L + +R+ F NTG G++VM
Sbjct: 931 KDAVATPGETELKQMTAFYQELTALRKSSPLFTLGDGATVMKRVDFRNTGADQQTGLLVM 990
Query: 885 SIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVK 944
+I+DG + G S LDS IVV N++P + A G +LQL IQ + D +
Sbjct: 991 TIDDGMQA--GAS-LDSRVDGIVVAINAAPESRTLQDFA--GTSLQLSAIQQAAGDRSLA 1045
Query: 945 NSSYEANSGCFVIPPRTTSVFVEPR 969
+ A G +P + +V P+
Sbjct: 1046 SGVQVAADGSVTLPAWSVAVLELPQ 1070
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 249 bits (637), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 198/698 (28%), Positives = 303/698 (43%), Gaps = 195/698 (27%)
Query: 204 FSYDG-PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGP 262
+ Y G LG +Y+++ S +WAPTA +V +Y G ++ K ++G W ++
Sbjct: 311 YDYSGNDLGNVYSKDATSFRVWAPTASNVQLLLYNSEKGSITKQLEMQKSDNGTWKLQVS 370
Query: 263 KSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKL 322
+ E YY+Y+V+V + + DPYAR +S + R ++V+L + P GW
Sbjct: 371 GNLENWYYLYQVTVNGTTQTAV------DPYARAISVNATRGMIVDLKA--TDPAGWQGD 422
Query: 323 VYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGL 382
+ P + D IYE HVRDFS+ ++ + +G YLAFT + G H+K
Sbjct: 423 HEQTP--ANPVDEVIYEAHVRDFSIDANSGMKN-KGKYLAFTEHGTKGPDHVK------- 472
Query: 383 THVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEK 442
G+D KE GI + V E
Sbjct: 473 -----------TGIDSLKE---------------------------LGITTVQLQPVEEF 494
Query: 443 LPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHI 502
D T+ D YNWGY+P + VP+G+YA+ P G+ R E ++++Q+L+
Sbjct: 495 NSIDETQP----------DTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQ 544
Query: 503 GLHVVLDVVYNHLQGSGPFDDN-SVLDKVVPGYYLRRNSDG-FIEHSTCMNNTASEHYMV 560
+ V +DVVYNH FD S DK+VP YY R +S+G + S N A+EH M
Sbjct: 545 RIGVNMDVVYNHT-----FDVMVSDFDKIVPQYYYRTDSNGNYTNGSGXGNEFATEHPMA 599
Query: 561 ERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGE 620
++ ++D + W Y VDGFRFDLM + K TM K + LH++ I +YGE
Sbjct: 600 QKFVLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISNELHAINP--------GIVLYGE 651
Query: 621 GWDFGEVAKNGRGVNASQF----NLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLL 676
W G G+++ Q G GIG FND IR+ L G+ F QGF TG
Sbjct: 652 PWTGGT-----SGLSSDQLVTKGQQKGLGIGVFNDNIRNG-LDGNVFD-KTAQGFATG-- 702
Query: 677 LQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVA 736
PN D I+ G+ +++DF
Sbjct: 703 -DPN----------------QVDVIKNGVIGSIQDF------------------------ 721
Query: 737 YALCPTETISYVSAHDNETLFD------------------------VVSLKGIPFFHCGD 772
P+ETI+YV++HDN TL+D V + +G+PF G+
Sbjct: 722 -TSAPSETINYVTSHDNMTLWDKILASNPSDTEADRIKMDELAHAVVFTSQGVPFMQGGE 780
Query: 773 EILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQ 832
E+LR+K + +SYN+GD +N+ D+S +
Sbjct: 781 EMLRTKGGNDNSYNAGDSVNQFDWS----------------------------------R 806
Query: 833 KSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICF 870
K+ + FS ++ +R P FR+ TA+ I++ + F
Sbjct: 807 KAQFKDVFDYFSSMIHLRNQHPAFRMTTADQIKQNLTF 844
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 192/727 (26%), Positives = 302/727 (41%), Gaps = 181/727 (24%)
Query: 192 TGLQLPGIL-----DELFSYDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLE 246
T LQ+ ++ D+ F YDG LGA+Y + +WAP A S + + G +
Sbjct: 83 TDLQIGAVIRTAAFDDEFYYDGELGAVYTADHTVFKVWAPAATSAAVKLSHPNKSGRTFQ 142
Query: 247 VVQLKENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLL 306
+ +L++ GV+++ G Y++ + E D YA+ ++ +G + ++
Sbjct: 143 MTRLEK--GVYAVTVTGDLHGYEYLFCI------CNNSEWMETVDQYAKAVTVNGEKGVV 194
Query: 307 VNLDSDTLKPEGWDKLVYEKPDILSFS---DISIYELHVRDFSVSDHTVHPDFRGGYLAF 363
L+P D++ + P + FS D IYE H+RDFS+ +++ + +G YLA
Sbjct: 195 -------LRP---DQMKWTAP-LKPFSHPVDAVIYETHLRDFSIHENSGMIN-KGKYLAL 242
Query: 364 TLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSW 423
T ++ + S++GL +V L GV V LP
Sbjct: 243 TETDTQTANG----SSSGLAYVKEL------GV-------THVELLP------------- 272
Query: 424 WIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNP 483
+ FA + + L D YNWGYNP+ + P+GSYASNP
Sbjct: 273 -------VNDFAGVDEEKPL-----------------DAYNWGYNPLHFFAPEGSYASNP 308
Query: 484 NG-SCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDG 542
+ R E ++M+ L+ GL V+LDVV+NH+ +NS +K VPGY+ R + G
Sbjct: 309 HDPQTRKTELKQMINTLHQHGLRVILDVVFNHVYKR----ENSPFEKTVPGYFFRHDECG 364
Query: 543 FIEHSTCM-NNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALH 601
+ T + N+ ASE M + I D ++ W Y VDGFRFDL+G + T++ K
Sbjct: 365 KPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGILDIDTVLYMK---E 421
Query: 602 SLTKEIHGVDGSSIYIYGEGWDFGEV---AKNGRGVNASQFNLSGTGIGSFNDRIRDAML 658
TK G I ++GEGWD + NA + GIG FND RDA+
Sbjct: 422 KATKAKPG-----ILLFGEGWDLATPLPHEQKAALANAPRM----PGIGFFNDMFRDAVK 472
Query: 659 GGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSE 718
G + L+ G G G +A + S
Sbjct: 473 GNT-------------FHLKATGFALGN-----------------GESAQAVMHGIAGSS 502
Query: 719 GNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSL---------------- 762
G K V P+++I+YV +HDN T +D +S
Sbjct: 503 GWKALAPIVPE-----------PSQSINYVESHDNHTFWDKMSFALPQENDSRKRSRQRL 551
Query: 763 --------KGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNE 814
+G+PF H G E R+K +SY S D +N++D W KE
Sbjct: 552 AVAIILLAQGVPFIHSGQEFFRTKQGVENSYQSSDSINQLD-------WDRRETFKEDVH 604
Query: 815 KNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQE---RICFH 871
LI R A P+F+ + + A ++ + L ++ +RL + + E I H
Sbjct: 605 YIRRLISLRKAHPAFRLRSA---ADIQRHLECLTLKEHLIAYRLYDLDEVDEWKDIIVIH 661
Query: 872 NTGPSAV 878
+ P +V
Sbjct: 662 HASPDSV 668
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 162/641 (25%), Positives = 250/641 (39%), Gaps = 173/641 (26%)
Query: 199 ILDELFSYDGPLGALYAEE--TVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKEND-G 255
+ DE +SYDG LGA EE V L LW+P+A VS +Y + V L++ + G
Sbjct: 4 LKDETYSYDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERG 63
Query: 256 VWSIK-------GPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSS--------- 299
W G + G YY Y++ Q + A DPYA+ L++
Sbjct: 64 TWKQTLDSTNKLGITDFTGYYYQYQIE------RQGKTVLALDPYAKSLAAWNSDDSKID 117
Query: 300 DGRRTLLVN-LDSDTLKPEGWDKLVYEK-PDILSFSDISIYELHVRDFSVSDHTVHPDFR 357
D + +D L P+ L Y K + + D IYE HVRDF+ SD + D
Sbjct: 118 DAHKVAKAAFVDPAKLGPQ---DLTYGKIHNFKTREDAVIYEAHVRDFT-SDPAIAKDLT 173
Query: 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQ 417
+ F A + L L + G+TH+ LLP + V++ K + +
Sbjct: 174 KPFGTF----EAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHER------------- 216
Query: 418 NTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKG 477
+ +A + + YNWGY+P + G
Sbjct: 217 -------------LSDYASS----------------------NSNYNWGYDPQNYFSLTG 241
Query: 478 SYASNP-NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL 536
Y+S+P N R EF+ ++ ++ G+ +LDVVYNH F+D + P YY
Sbjct: 242 MYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFED------LEPNYYH 295
Query: 537 RRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKA 596
++DG S + H+M +RL+ID + YKVDGFRFD+MG +++ +A
Sbjct: 296 FMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEA 355
Query: 597 KHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTG-IGSFNDRIRD 655
A +L ++ + GEGW +N A Q + T + F+D IR+
Sbjct: 356 YKAARALN--------PNLIMLGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSDDIRN 407
Query: 656 AMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLT 715
+ G P Q F+TG N + + ++A Q T
Sbjct: 408 NLKSGYP--NEGQPAFITGGKRDVN-------TIFKNLIA-----------------QPT 441
Query: 716 NSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVV--------------- 760
N E + P + I Y++AHDN TLFD++
Sbjct: 442 NFEAD-------------------SPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYA 482
Query: 761 --------------SLKGIPFFHCGDEILRSKSLDRDSYNS 787
+ +G PF H G E R+K +Y +
Sbjct: 483 EIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAYRT 523
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 162/641 (25%), Positives = 251/641 (39%), Gaps = 173/641 (26%)
Query: 199 ILDELFSYDGPLGALYAEE--TVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKEND-G 255
+ DE +SYDG LGA EE V L LW+P+A VS +Y + V L++ + G
Sbjct: 311 LKDETYSYDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERG 370
Query: 256 VWSIK-------GPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSS--------- 299
W G + G YY Y++ + L + DPYA+ L++
Sbjct: 371 TWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLAL------DPYAKSLAAWNSDDSKID 424
Query: 300 DGRRTLLVN-LDSDTLKPEGWDKLVYEK-PDILSFSDISIYELHVRDFSVSDHTVHPDFR 357
D + +D L P+ L Y K + + D IYE HVRDF+ SD + D
Sbjct: 425 DAHKVAKAAFVDPAKLGPQD---LTYGKIHNFKTREDAVIYEAHVRDFT-SDPAIAKDLT 480
Query: 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQ 417
+ F A + L L + G+TH+ LLP + V++ K +
Sbjct: 481 KPFGTF----EAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNH--------------- 521
Query: 418 NTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKG 477
E+L ++ ++ YNWGY+P + G
Sbjct: 522 -----------------------ERLSDYAS----------SNSNYNWGYDPQNYFSLTG 548
Query: 478 SYASNP-NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL 536
Y+S+P N R EF+ ++ ++ G+ +LDVVYNH F+D + P YY
Sbjct: 549 MYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFED------LEPNYYH 602
Query: 537 RRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKA 596
++DG S + H+M +RL+ID + YKVDGFRFD+MG +++ +A
Sbjct: 603 FMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEA 662
Query: 597 KHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTG-IGSFNDRIRD 655
A +L ++ + GEGW +N A Q + T + F+D IR+
Sbjct: 663 YKAARALN--------PNLIMLGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSDDIRN 714
Query: 656 AMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLT 715
+ G P Q F+TG N + + ++A Q T
Sbjct: 715 NLKSGYP--NEGQPAFITGGKRDVN-------TIFKNLIA-----------------QPT 748
Query: 716 NSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVV--------------- 760
N E + P + I Y++AHDN TLFD++
Sbjct: 749 NFEAD-------------------SPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYA 789
Query: 761 --------------SLKGIPFFHCGDEILRSKSLDRDSYNS 787
+ +G PF H G E R+K +Y +
Sbjct: 790 EIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAYRT 830
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 167/631 (26%), Positives = 254/631 (40%), Gaps = 178/631 (28%)
Query: 201 DELFSYDGPLGALYAEE--TVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVW 257
D+L++Y G LGA+ ++ V LW+P+A SV+ IY + L K N GVW
Sbjct: 126 DQLYAYSGNLGAVLNQDGSKVEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNNKGVW 185
Query: 258 SI-----KGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSD 312
G K++ G YY+YE+ +K DPYA+ L+ T VN D
Sbjct: 186 QTILDTKLGIKNYTGYYYLYEIKRGK------DKVKILDPYAKSLAEWDSNT--VNDDIK 237
Query: 313 TLKPEGWDKLVYEKPDILSFSDIS---------IYELHVRDFSVSDHTVHPDFR---GGY 360
T K + P LSF+ I+ IYE HVRDF+ SD ++ + G +
Sbjct: 238 TAKA-AFVNPSQLGPQNLSFAKIANFKGRQDAVIYEAHVRDFT-SDQSLDGKLKNQLGTF 295
Query: 361 LAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTF 420
AF S + +L+KL G+TH+ LLP + V++
Sbjct: 296 AAF----SEKLDYLQKL---GVTHIQLLPVLSYFYVNEM--------------------- 327
Query: 421 SSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYA 480
D + A ++ D+ YNWGY+P + G Y+
Sbjct: 328 -------------------------DKSRSTAYTSS---DNNYNWGYDPQSYFALSGMYS 359
Query: 481 SNPNG-SCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRN 539
P S R E ++++ ++ G+ V+LDVVYNH + F+D + P YY N
Sbjct: 360 EKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYLFED------IEPNYYHFMN 413
Query: 540 SDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHA 599
DG S + H M R+++D + +KVDGFRFD+MG A
Sbjct: 414 EDGSPRESFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGD-------HDAAA 466
Query: 600 LHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVN-ASQFNLSGTG-IGSFNDRIRDAM 657
+ KE ++ + I I GEGW + G+ V A Q + T +G F+D IR+++
Sbjct: 467 IELAYKEAKAINPNMIMI-GEGWRTFQ-GDQGKPVKPADQDWMKSTDTVGVFSDDIRNSL 524
Query: 658 LGGSPF-GPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTN 716
G P G P F+TG G ++++ G+ N++ Q N
Sbjct: 525 KSGFPNEGTP---AFITG----------GPQSLQ-------------GIFKNIK-AQPGN 557
Query: 717 SEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSL-------------- 762
E + P + + Y++AHDN TL DV++
Sbjct: 558 FEAD-------------------SPGDVVQYIAAHDNLTLHDVIAKSINKDPKVAEEDIH 598
Query: 763 -------------KGIPFFHCGDEILRSKSL 780
+G F H G E R+K L
Sbjct: 599 RRLRLGNVMILTSQGTAFIHSGQEYGRTKRL 629
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 161/641 (25%), Positives = 250/641 (39%), Gaps = 173/641 (26%)
Query: 199 ILDELFSYDGPLGALYAEE--TVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKEND-G 255
+ DE +SYDG LGA EE V L LW+P+A VS +Y + V L++ + G
Sbjct: 5 LKDETYSYDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERG 64
Query: 256 VWSIK-------GPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSS--------- 299
W G + G YY Y++ Q + A DPYA+ L++
Sbjct: 65 TWKQTLDSTNKLGITDFTGYYYQYQIE------RQGKTVLALDPYAKSLAAWNSDDSKID 118
Query: 300 DGRRTLLVN-LDSDTLKPEGWDKLVYEK-PDILSFSDISIYELHVRDFSVSDHTVHPDFR 357
D + +D L P+ L Y K + + D IYE HVRDF+ SD + D
Sbjct: 119 DAHKVAKAAFVDPAKLGPQ---DLTYGKIHNFKTREDAVIYEAHVRDFT-SDPAIAKDLT 174
Query: 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQ 417
+ F A + L L + G+TH+ LLP + V++ K + +
Sbjct: 175 KPFGTF----EAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHER------------- 217
Query: 418 NTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKG 477
+ +A + + YNWGY+P + G
Sbjct: 218 -------------LSDYASS----------------------NSNYNWGYDPQNYFSLTG 242
Query: 478 SYASNP-NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL 536
Y+S+P N R EF+ ++ ++ G+ +LDVVYNH F+D + P YY
Sbjct: 243 MYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFED------LEPNYYH 296
Query: 537 RRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKA 596
++DG S + H+M +RL+ID + YKVDGFRFD+MG +++ +A
Sbjct: 297 FMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEA 356
Query: 597 KHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTG-IGSFNDRIRD 655
A +L ++ + GEGW +N A Q + T + F+D IR+
Sbjct: 357 YKAARALN--------PNLIMLGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSDDIRN 408
Query: 656 AMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLT 715
+ G P Q F+TG N + + ++A Q T
Sbjct: 409 NLKSGYP--NEGQPAFITGGKRDVN-------TIFKNLIA-----------------QPT 442
Query: 716 NSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVV--------------- 760
N E + P + I Y++AHD+ TLFD++
Sbjct: 443 NFEAD-------------------SPGDVIQYIAAHDDLTLFDIIAQSIKKDPSKAENYA 483
Query: 761 --------------SLKGIPFFHCGDEILRSKSLDRDSYNS 787
+ +G PF H G E R+K +Y +
Sbjct: 484 EIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAYRT 524
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 98/462 (21%), Positives = 177/462 (38%), Gaps = 119/462 (25%)
Query: 209 PLGALYAEET--VSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKENDG-VWSIKGPKSW 265
PLG+ + E+ V+ L++ A+ V +Y P E++++K G +W + P
Sbjct: 19 PLGSNWIEDDDGVNFSLFSENAEKVELLLYSLTNQKYPKEIIEVKNKTGDIWHVFVPGLR 78
Query: 266 EGCYYVYEVS---------VYHPSALQIEKCYANDPYARGLSS--------------DGR 302
G Y Y V ++P+ + I DPYA+ ++ D
Sbjct: 79 PGQLYAYRVYGPYKPELGLRFNPNKVLI------DPYAKAINGSVIWNDAVFGYKIGDQN 132
Query: 303 RTLLVN-LDSDTLKPEG--------WDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVH 353
+ L + DS P+ WD + K + D IYE+HV+ F+ +
Sbjct: 133 QDLTYDERDSGEYVPKSVVINPYFEWDDEDFIKGKKVPLKDTVIYEVHVKGFTKLRLDLP 192
Query: 354 PDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLV 413
+ RG Y + A + L + G+T +V +P
Sbjct: 193 ENIRGTY-----EGLASEQMISYLKDLGIT---------------------TVELMPVFH 226
Query: 414 FFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWG 473
F Q + G+ ++ WGY+P+ +
Sbjct: 227 FIDQR------FLTDKGLTNY------------------------------WGYDPINFF 250
Query: 474 VPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHL-QGS--GPFDDNSVLDKV 530
P+ Y+S + + F++MV L++ G+ V++DVVYNH +G+ GP +D
Sbjct: 251 SPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHLGPTLSFRGIDNT 310
Query: 531 VPGYYLRR--NSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI 588
YY+ + N +++ + N H V ++++D L W VDGFRFDL
Sbjct: 311 --AYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDL---- 364
Query: 589 MKSTMMKAKHALHSLTKEIHGVDG----SSIYIYGEGWDFGE 626
+ + + ++++ L + S + + E WD G+
Sbjct: 365 -AAALARELYSVNMLNTFFIALQQDPILSQVKLIAEPWDVGQ 405
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 148/398 (37%), Gaps = 59/398 (14%)
Query: 439 VLEKLPPDSTEQQAQITAIQNDDGYN-WGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQ 497
+E LP T+ A +D N WGY + P YA N T EF+ MVQ
Sbjct: 221 AVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQ 280
Query: 498 ALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPG---------YYLRRNSDGFIEHST 548
A ++ G+ V +DVVYNH G + + + Y L + F +++
Sbjct: 281 AFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTG 340
Query: 549 CMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKA------------ 596
N + + + + LI+D L WA VDGFRFDL + S + A
Sbjct: 341 IGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGG 400
Query: 597 --------KHALHSLTKEIH---GVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTG 645
A++ + +E GS + ++ E W G N+ Q G
Sbjct: 401 YNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGG--------NSYQLGGFPQG 452
Query: 646 IGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAA---AKDHIQ 702
+N RD++ + G +T + Q G+ + + + + + I
Sbjct: 453 WSEWNGLFRDSLRQAQN-----ELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFID 507
Query: 703 VGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNE------TL 756
V L+D N N + GT Y+ + +A D
Sbjct: 508 VHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAVDQRRAARTGMA 567
Query: 757 FDVVSLKGIPFFHCGDEILRSKSLDRDSYN---SGDWL 791
F+++S G P GDE LR+ + ++YN S +WL
Sbjct: 568 FEMLS-AGTPLMQGGDEYLRTLQCNNNAYNLDSSANWL 604
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 326 KPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHV 385
KP D+ IYE+HVR F+ D ++ +RG Y L+ S+L L G+T V
Sbjct: 171 KPTRAQKDDV-IYEVHVRGFTEQDTSIPAQYRGTYYGAGLK----ASYLASL---GVTAV 222
Query: 386 HLLP 389
LP
Sbjct: 223 EFLP 226
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 141/645 (21%), Positives = 228/645 (35%), Gaps = 160/645 (24%)
Query: 208 GPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGPKSWEG 267
PLGA Y + V+ L++ A+ V C++ G + +W P + G
Sbjct: 10 APLGAHYDGQGVNFTLFSAHAERVELCVFD--ANGQEHRYDLPGHSGDIWHGYLPDARPG 67
Query: 268 CYYVYEVS---------VYHPSALQIEKCYANDPYARGLSSDGRRTLLVNL--------D 310
Y Y V ++P+ L I DP AR + + + L++ D
Sbjct: 68 LRYGYRVHGPWQPAEGHRFNPAKLLI------DPCARQIDGEFKDNPLLHAGHNEPDYRD 121
Query: 311 SDTLKPE--------GWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLA 362
+ + P+ W+ + P + IYE HV+ + + + RG Y A
Sbjct: 122 NAAIAPKCVVVVDHYDWED---DAPPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKA 178
Query: 363 FTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSS 422
L + +++LK+L G+T + LLP
Sbjct: 179 --LGHPVMINYLKQL---GITALELLP--------------------------------- 200
Query: 423 WWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASN 482
+ FA +E + Q + N WGYNPV +YA +
Sbjct: 201 --------VAQFA------------SEPRLQRMGLSN----YWGYNPVAMFALHPAYACS 236
Query: 483 PNGSCRTIEFRRMVQALNHIGLHVVLDVVYNH---LQGSGPFDDNSVLDKVVPGYYLRRN 539
P + EFR ++AL+ G+ V+LD+V NH L GP +D YY R
Sbjct: 237 PETALD--EFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNR--SYYWIRE 292
Query: 540 SDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHA 599
+ + C N H V L W VDGFRFDL + ++ +
Sbjct: 293 DGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAP 352
Query: 600 LHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDA--- 656
L + + + S + + E WD +A G V N +ND RDA
Sbjct: 353 LFTAIQNCPVL--SQVKLIAEPWD---IAPGGYQVG----NFPPL-FAEWNDHFRDAARR 402
Query: 657 --MLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQL 714
+ P G + + + + NG ++ +AA + + LRD
Sbjct: 403 FWLHYDLPLGAFAGRFAASSDVFKRNG----------RLPSAAINLVTAHDGFTLRDCVC 452
Query: 715 TNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETL---FDVVSLK-------- 763
N + N+ G E + DGT +Y + H E L D+V +
Sbjct: 453 FNHKHNEANGEENR--DGT----------NNNYSNNHGKEGLGGSLDLVERRRDSIHALL 500
Query: 764 -------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSN 801
G P GDE S+ + ++Y + L +D+S S+
Sbjct: 501 TTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASS 545
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 465 WGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDN 524
WGY+ VL P +Y + P+ +F+ + A + GL VVLD+V NH GP +
Sbjct: 185 WGYDGVLLYAPHSAYGT-PD------DFKAFIDAAHGYGLSVVLDIVLNHF---GP--EG 232
Query: 525 SVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDL 584
+ L + P ++ + + N A + V R II+ L W Y +DG RFD
Sbjct: 233 NYLPLLAPAFFHKERM------TPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDA 286
Query: 585 MGHIMKSTMMKAKHALHSLTKEI 607
+ I S+ A+H L + + I
Sbjct: 287 IDQIEDSS---ARHVLVEIAQRI 306
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 30/183 (16%)
Query: 441 EKLPPDSTEQQAQITAIQN------DDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRR 494
EKLP ++ +TAIQ D WGY+ + P Y R +
Sbjct: 148 EKLP---YLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYG-------RPEDLMA 197
Query: 495 MVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTA 554
+V A + +GL V LDVVYNH SG + L P Y+ R S + M
Sbjct: 198 LVDAAHRLGLGVFLDVVYNHFGPSGNY-----LSSYAPSYFTDRFSSAW-----GMGLDY 247
Query: 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSS 614
+E +M R + + W +Y DG R D ++ + H L L +EIH + G+
Sbjct: 248 AEPHM-RRYVTGNARMWLRDYHFDGLRLDATPYMTDDS---ETHILTELAQEIHELGGTH 303
Query: 615 IYI 617
+ +
Sbjct: 304 LLL 306
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDD 523
+WGY+ V + SY P G FR++V + GL V+LDVVYNH+ GP +
Sbjct: 149 DWGYDGVYLYAVQNSYGG-PEG------FRKLVDEAHKKGLGVILDVVYNHV---GP--E 196
Query: 524 NSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFD 583
+ + K+ P Y+ ++ + N +E V + I++++ W Y VDGFR D
Sbjct: 197 GNYMVKLGP-YFSQKYKTPW---GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLD 252
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIH 608
+ I+ ++ KH L + +H
Sbjct: 253 AVHAIIDTS---PKHILEEIADVVH 274
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDD 523
+WGY+ V + SY P G FR++V + GL V+LDVVYNH+ GP +
Sbjct: 149 DWGYDGVYLYAVQNSYGG-PEG------FRKLVDEAHKKGLGVILDVVYNHV---GP--E 196
Query: 524 NSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFD 583
+ + K+ P Y+ ++ + N +E V + I++++ W Y VDGFR D
Sbjct: 197 GNYMVKLGP-YFSQKYKTPW---GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLD 252
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIH 608
+ I+ ++ KH L + +H
Sbjct: 253 AVHAIIDTS---PKHILEEIADVVH 274
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDD 523
+WGY+ V + SY P G FR++V + GL V+LDVVYNH+ GP +
Sbjct: 149 DWGYDGVYLYAVQNSYGG-PEG------FRKLVDEAHKKGLGVILDVVYNHV---GP--E 196
Query: 524 NSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFD 583
+ + K+ P Y+ ++ + N +E V + I++++ W Y VDGFR D
Sbjct: 197 GNYMVKLGP-YFSQKYKTPW---GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLD 252
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIH 608
+ I+ ++ KH L + +H
Sbjct: 253 AVHAIIDTS---PKHILEEIADVVH 274
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDD 523
+WGY+ V + SY P G FR++V + GL V+LDVVYNH+ GP +
Sbjct: 149 DWGYDGVYLYAVQNSYGG-PEG------FRKLVDEAHKKGLGVILDVVYNHV---GP--E 196
Query: 524 NSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFD 583
+ + K+ P Y+ ++ + N +E V + I++++ W Y VDGFR +
Sbjct: 197 GNYMVKLGP-YFSQKYKTPW---GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLE 252
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIH 608
+ I+ ++ KH L + +H
Sbjct: 253 AVHAIIDTS---PKHILEEIADVVH 274
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDD 523
+WGY+ V + SY P G FR++V + GL V+LDVVYNH+ GP +
Sbjct: 149 DWGYDGVYLYAVQNSYGG-PEG------FRKLVDEAHKKGLGVILDVVYNHV---GP--E 196
Query: 524 NSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFD 583
+ + K+ P Y+ ++ + N +E V + I++++ W Y VDGFR
Sbjct: 197 GNYMVKLGP-YFSQKYKTPW---GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLS 252
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIH 608
+ I+ ++ KH L + +H
Sbjct: 253 AVHAIIDTS---PKHILEEIADVVH 274
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 30/183 (16%)
Query: 441 EKLPPDSTEQQAQITAIQN------DDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRR 494
EKLP ++ +TAIQ D WGY+ + P Y R +
Sbjct: 148 EKLP---YLKELGVTAIQVXPLAAFDGQRGWGYDGAAFYAPYAPYG-------RPEDLXA 197
Query: 495 MVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTA 554
+V A + +GL V LDVVYNH SG + L P Y+ R S + + A
Sbjct: 198 LVDAAHRLGLGVFLDVVYNHFGPSGNY-----LSSYAPSYFTDRFSSAW----GXGLDYA 248
Query: 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSS 614
H R + + W +Y DG R D + + H L L +EIH + G+
Sbjct: 249 EPH--XRRYVTGNARXWLRDYHFDGLRLDATPYXTDDS---ETHILTELAQEIHELGGTH 303
Query: 615 IYI 617
+ +
Sbjct: 304 LLL 306
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 26/146 (17%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGS-GPFDD---NSVLDKVVPGYYLRR--------- 538
+ +V+ + G+ V+LD V+NH PF D N + +++R
Sbjct: 225 LKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRP 284
Query: 539 --NSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKA 596
++ F+ H +N E V+R ++D W + +DG+R D+ I +
Sbjct: 285 NYDTFAFVPHMPKLNTAHPE---VKRYLLDVATYWIREFDIDGWRLDVANEIDHQFWREF 341
Query: 597 KHALHSLTKEIHGVDGSSIYIYGEGW 622
+ A+ +L + +YI GE W
Sbjct: 342 RQAVKALKPD--------VYILGEIW 359
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGS-GPFDD---NSVLDKVVPGYYLRR--------- 538
+ +V+ + G+ V+LD V+NH PF D N + +++R
Sbjct: 225 LKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRP 284
Query: 539 --NSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKA 596
++ F+ H +N E V+R ++D W + +DG+R D+ I +
Sbjct: 285 NYDTFAFVPHMPKLNTAHPE---VKRYLLDVATYWIREFDIDGWRLDVANEIDHQFWREF 341
Query: 597 KHALHSLTKEIH 608
+ A+ +L +++
Sbjct: 342 RQAVKALKPDVY 353
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--DKVVPG--------YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG PG Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRLD 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G +++S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAISSSEY 247
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--DKVVPG--------YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG PG Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G +++S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAISSSEY 247
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--------DKVVPG--YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG ++ P Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G + +S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAIQSSEY 247
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--------DKVVPG--YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG ++ P Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G + +S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAIKSSEY 247
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase Complexed
With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--------DKVVPG--YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG ++ P Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G + +S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAIKSSEY 247
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--DKVVPG--------YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG PG Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G + +S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAIQSSEY 247
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--------DKVVPG--YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG ++ P Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G + +S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAIKSSEY 247
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--DKVVPG--------YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG PG Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G + +S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAIKSSEY 247
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--DKVVPG--------YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG PG Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G + +S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAIQSSEY 247
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--DKVVPG--------YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG PG Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G + +S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAIKSSEY 247
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 33/176 (18%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL--DKVVPG--------YYLRRNS 540
EFR MV N++G+ + +D V NH+ GSG PG Y +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 541 DGFIEHSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFD 583
DG + ++ + ++ Y V R +I D L ++ V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 584 LMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639
H+ + LH+L GS +I+ E D G G + +S++
Sbjct: 198 ASKHMWPGDIKAVLDKLHNLNTNWFPA-GSRPFIFQEVIDLG-----GEAIKSSEY 247
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL--------------R 537
FRR+V + G+ ++LD V+NH G F VL K Y R
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNH-AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
Query: 538 RNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
N + F M +E+ V+ + D W + +DG+R D+ + + + +
Sbjct: 281 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVANEVDHAFWREFR 339
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
+ SL + V +I+ GW G+
Sbjct: 340 RLVKSLNPDALIV--GAIWHDASGWLMGD 366
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL--------------R 537
FRR+V + G+ ++LD V+NH G F VL K Y R
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNH-AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
Query: 538 RNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
N + F M +E+ V+ + D W + +DG+R D+ + + + +
Sbjct: 281 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVANEVDHAFWREFR 339
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
+ SL + V I+ GW G+
Sbjct: 340 RLVKSLNPDALIV--GEIWHDASGWLMGD 366
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL--------------R 537
FRR+V + G+ ++LD V+NH G F VL K Y R
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNH-AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
Query: 538 RNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
N + F M +E+ V+ + D W + +DG+R D+ + + + +
Sbjct: 281 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVANEVDHAFWREFR 339
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
+ SL + V I+ GW G+
Sbjct: 340 RLVKSLNPDALIV--GEIWHDASGWLMGD 366
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL--------------R 537
FRR+V + G+ ++LD V+NH G F VL K Y R
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNH-AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
Query: 538 RNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
N + F M +E+ V+ + D W + +DG+R D+ + + + +
Sbjct: 281 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVANEVDHAFWREFR 339
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
+ SL + V I+ GW G+
Sbjct: 340 RLVKSLNPDALIV--GEIWHDASGWLMGD 366
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL--------------R 537
FRR+V + G+ ++LD V+NH G F VL K Y R
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNH-AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
Query: 538 RNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
N + F M +E+ V+ + D W + +DG+R D+ + + + +
Sbjct: 281 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVANEVDHAFWREFR 339
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
+ SL + V I+ GW G+
Sbjct: 340 RLVKSLNPDALIV--GEIWHDASGWLMGD 366
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCM 550
+F++ V+ + + ++V++D+V NH ++VL K P ++LR +
Sbjct: 80 DFKKFVKRAHELNMYVLMDMVLNHAAV------DNVLVKKHPEWFLRDENGNPTRKVPDW 133
Query: 551 NNTASEHYM---VERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEI 607
++ Y + +I+ + W + VDGFR D+ G + ++A+ L + + I
Sbjct: 134 SDVVDFDYSNGELREYMINMMRYWVEEFDVDGFRCDVAGLVPLDFWLQARKNLDPVKRLI 193
Query: 608 HGVDGSSIYIY 618
+ Y+Y
Sbjct: 194 WISETHDPYMY 204
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 26/145 (17%)
Query: 493 RRMVQALNHIGLHVVLDVVYNHLQGS-GPFDD---NSVLDKVVPGYYL---------RRN 539
+ ++ + G+ V+LD V+NH PF D N K +++ R N
Sbjct: 226 KTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPN 285
Query: 540 SD--GFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
D F+ +N E V+R ++D W + +DG+R D+ I + +
Sbjct: 286 YDTFAFVPQMPKLNTANPE---VKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFR 342
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGW 622
+ +L + +YI GE W
Sbjct: 343 QEVKALKPD--------VYILGEIW 359
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHL--QGSGPFDDNSVL------DKVVPGYYLRRNSDG 542
+ + + AL+ G+++++DVV NH+ G+G D SV D P +++ D
Sbjct: 99 DLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQ 158
Query: 543 F-IEHSTCMNNTAS--EHYMVERLIIDDLLCWA----VNYKVDGFRFDLMGHIMK 590
+E +NT S + + ++ ++ W NY +DG R D + H+ K
Sbjct: 159 TQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQK 213
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL--------------R 537
FRR+V + G+ ++LD V+NH G F VL K Y R
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNH-AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
Query: 538 RNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
N + + M +E+ V+ + D W + +DG+R D+ + + + +
Sbjct: 281 TNYETYAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVANEVDHAFWREFR 339
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
+ SL + V I+ GW G+
Sbjct: 340 RLVKSLNPDALIV--GEIWHDASGWLMGD 366
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHL--QGSGPFDDNSVL------DKVVPGYYLRRNSDG 542
+ + + AL+ G+++++DVV NH+ G+G D SV D P +++ D
Sbjct: 99 DLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQ 158
Query: 543 F-IEHSTCMNNTAS--EHYMVERLIIDDLLCWA----VNYKVDGFRFDLMGHIMK 590
+E +NT S + + ++ ++ W NY +DG R D + H+ K
Sbjct: 159 TQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQK 213
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 35/214 (16%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHL-QGSGPFDD---NSVLDKVVPGYYLR----RNSDGF 543
+++V + G+ V+LD V+NH + PF D N K +++R DG
Sbjct: 221 LKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGI 280
Query: 544 IEHST-----CMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKH 598
+ T M +EH V+ ++ W +DG+R D+ A
Sbjct: 281 PTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDV-----------ANE 329
Query: 599 ALHSLTKEIHGVDGSS---IYIYGEGWDFGEVAKNGRGVNA-SQFNLSGTGIGSFNDRIR 654
H +E V + YI GE W + G +A + + + F +I
Sbjct: 330 VSHQFWREFRRVVKQANPDAYILGEVWHESSIWLEGDQFDAVMNYPFTNAVLDFFIHQIA 389
Query: 655 DA-----MLGGSPFGPPLQQGFVTGLLLQPNGHD 683
DA MLG G P Q V LL + HD
Sbjct: 390 DAEKFSFMLGKQLAGYPRQASEVMFNLL--DSHD 421
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL--------------R 537
FRR+V + G+ ++LD V+NH G F VL K Y R
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNH-AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
Query: 538 RNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
N + F M +E+ V+ + D W + +DG+R ++ + + + +
Sbjct: 281 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLNVANEVDHAFWREFR 339
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
+ SL + V I+ GW G+
Sbjct: 340 RLVKSLNPDALIV--GEIWHDASGWLMGD 366
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL--------------R 537
FRR+V + G+ ++LD V+NH G F VL K Y R
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNH-AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
Query: 538 RNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
N + F M +E+ V+ + D W + +DG+R ++ + + + +
Sbjct: 281 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLNVANEVDHAFWREFR 339
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
+ SL + V I+ GW G+
Sbjct: 340 RLVKSLNPDALIV--GEIWHDASGWLMGD 366
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 26/145 (17%)
Query: 493 RRMVQALNHIGLHVVLDVVYNHLQGS-GPFDD---NSVLDKVVPGYYL---------RRN 539
+ ++ + G+ V+LD V+NH PF D N K +++ R N
Sbjct: 226 KTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPN 285
Query: 540 SD--GFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
D F+ +N E V+R ++D W + +DG+R D+ I + +
Sbjct: 286 YDTFAFVPQMPKLNTANPE---VKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFR 342
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGW 622
+ +L + +YI G+ W
Sbjct: 343 QEVKALKPD--------VYILGQIW 359
>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase
From Arabidopsis Thaliana In Complex With Coformycin
5'-Phosphate
Length = 701
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 485 GSCRTIEFRRMVQALNHIGLHVVLDVVYNHL-QGSGPFDDNSVLDKVVPGYYLRRNSDGF 543
G+ RT+ RR+V LH++L+ L Q S P D +Y R D
Sbjct: 204 GNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAPHRD----------FYNVRKVDTH 253
Query: 544 IEHSTCMNNTASEHYMVERL 563
+ HS CMN ++ +L
Sbjct: 254 VHHSACMNQKHLLRFIKSKL 273
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHS--- 547
+F+ + + +G+ V+LD+VYNH + P +SVL P ++ ++DG + +
Sbjct: 85 DFKALTDRAHELGMKVMLDIVYNH---TSP---DSVLATEHPEWFY-HDADGQLTNKVGD 137
Query: 548 -TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDL 584
+ + + H+ + + ID LL W+ VDG+R D+
Sbjct: 138 WSDVKDLDYGHHELWQYQIDTLLYWS--QFVDGYRCDV 173
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV--VPGY-----YLRRNSDGF 543
EF+ M A G+ V++D V NH FD ++ ++V +P + ++ SD +
Sbjct: 76 EFKEMCAAAEEYGIKVIVDAVINHT----TFDYAAISNEVKSIPNWTHGNTQIKNWSDRW 131
Query: 544 -IEHSTCM-------NNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI 588
+ ++ + NT + Y+ L A+N DGFRFD HI
Sbjct: 132 DVTQNSLLGLYDWNTQNTQVQSYLKR------FLERALNDGADGFRFDAAKHI 178
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV--VPGY-----YLRRNSDGF 543
EF+ M A G+ V++D V NH FD ++ ++V +P + ++ SD +
Sbjct: 79 EFKEMCAAAEEYGIKVIVDAVINHT----TFDYAAISNEVKSIPNWTHGNTQIKNWSDRW 134
Query: 544 -IEHSTCM-------NNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI 588
+ ++ + NT + Y+ L A+N DGFRFD HI
Sbjct: 135 DVTQNSLLGLYDWNTQNTQVQSYLKR------FLERALNDGADGFRFDAAKHI 181
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 329 ILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNA------GL 382
+ F DI + L VRD ++SD V+P +RG L T +N + +K+ A
Sbjct: 163 LFVFDDIRDHLLMVRDVNISDKPVYP-YRGILLD-TARNYYSIESIKRTIEAMAAVKLNT 220
Query: 383 THVHLLPTFQFAGVDDRKENWKSVGSL 409
H H+ + F V ++ N G+L
Sbjct: 221 NHWHITDSQSFPFVTTKRPNLYKFGAL 247
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 19/108 (17%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGP-----------FDDNSVLDKVVPGYYLRRN 539
+ R+ AL G+ V+ DVV NH+ P F N D PG Y
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCAD---PGNYPNDC 150
Query: 540 SDG--FIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585
DG FI +N + H V + D+ Y GFRFD +
Sbjct: 151 DDGDRFIGGDADLN---TGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV 195
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 18/149 (12%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYL--------------R 537
FRR+V + G+ ++LD V+NH G F VL K Y R
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNH-AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
Query: 538 RNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597
N + M +E+ V+ + D W + +DG+R D+ + + + +
Sbjct: 281 TNYETAAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVANEVDHAFWREFR 339
Query: 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626
+ SL + V I+ GW G+
Sbjct: 340 RLVKSLNPDALIV--GEIWHDASGWLMGD 366
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDD 523
+WGY P G YA R +FR + A + GL+V+LD V H P DD
Sbjct: 186 SWGYQPT------GLYAPTRRFGTRD-DFRYFIDAAHAAGLNVILDWVPGHF----PTDD 234
Query: 524 NSVLDKVVPGYYLRRNSD---GFIEH-STCMNNTASEHYMVERLIIDDLLCWAVNYKVDG 579
++ + G L +SD G+ + +T + N V ++ + L W + +D
Sbjct: 235 FALAE--FDGTNLYEHSDPREGYHQDWNTLIYNYGRRE--VSNFLVGNALYWIERFGIDA 290
Query: 580 FRFDLMGHIM 589
R D + ++
Sbjct: 291 LRVDAVASMI 300
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHS--- 547
+ + +V + +GL V++DVV++H N+V D + GY + +N+ H+
Sbjct: 252 DLKYLVDKAHSLGLRVLMDVVHSHAS-------NNVTDGL-NGYDVGQNTHESYFHTGDR 303
Query: 548 -------TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFD 583
+ + N A+ + V R ++ +L W + DGFRFD
Sbjct: 304 GYHKLWDSRLFNYAN--WEVLRFLLSNLRYWMDEFMFDGFRFD 344
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1KB3|A Chain A, Three Dimensional Structure Analysis Of The R195a Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha-amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGS 518
EFR MV N++G+ + +D V NH+ G+
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGN 105
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 64/176 (36%), Gaps = 34/176 (19%)
Query: 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLW------------GVPKGSYASNPNG 485
V+ + P D Q A DG++ + PV W G +G + + N
Sbjct: 26 NVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNK 85
Query: 486 SCR---TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP-----------FDDNSVLDKVV 531
+ R + R+ AL G+ V+ DVV NH+ P F N D
Sbjct: 86 NGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCAD--- 142
Query: 532 PGYYLRRNSDG--FIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585
PG Y DG FI +N + H V + D+ Y GFRFD +
Sbjct: 143 PGNYPNDCDDGDRFIGGDADLN---TGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV 195
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 64/175 (36%), Gaps = 34/175 (19%)
Query: 439 VLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLW------------GVPKGSYASNPNGS 486
V+ + P D Q A DG++ + PV W G +G + + N +
Sbjct: 27 VVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKN 86
Query: 487 CR---TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP-----------FDDNSVLDKVVP 532
R + R+ AL G+ V+ DVV NH+ P F N D P
Sbjct: 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCAD---P 143
Query: 533 GYYLRRNSDG--FIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585
G Y DG FI +N + H V + D+ Y GFRFD +
Sbjct: 144 GNYPNDCDDGDRFIGGDADLN---TGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV 195
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 64/175 (36%), Gaps = 34/175 (19%)
Query: 439 VLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLW------------GVPKGSYASNPNGS 486
V+ + P D Q A DG++ + PV W G +G + + N +
Sbjct: 27 VVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKN 86
Query: 487 CR---TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP-----------FDDNSVLDKVVP 532
R + R+ AL G+ V+ DVV NH+ P F N D P
Sbjct: 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCAD---P 143
Query: 533 GYYLRRNSDG--FIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585
G Y DG FI +N + H V + D+ Y GFRFD +
Sbjct: 144 GNYPNDCDDGDRFIGGDADLN---TGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV 195
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 64/175 (36%), Gaps = 34/175 (19%)
Query: 439 VLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLW------------GVPKGSYASNPNGS 486
V+ + P D Q A DG++ + PV W G +G + + N +
Sbjct: 27 VVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKN 86
Query: 487 CR---TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP-----------FDDNSVLDKVVP 532
R + R+ AL G+ V+ DVV NH+ P F N D P
Sbjct: 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCAD---P 143
Query: 533 GYYLRRNSDG--FIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585
G Y DG FI +N + H V + D+ Y GFRFD +
Sbjct: 144 GNYPNDCDDGDRFIGGDADLN---TGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV 195
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHS--- 547
+ + +V + +GL V++DVV++H N+V D + GY + +N+ H+
Sbjct: 252 DLKYLVDKAHSLGLRVLMDVVHSHAS-------NNVTDGL-NGYDVGQNTHESYFHTGDR 303
Query: 548 -------TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFD 583
+ + N A+ + V R ++ +L W + DGFRFD
Sbjct: 304 GYHKLWDSRLFNYAN--WEVLRFLLSNLRYWMDEFMFDGFRFD 344
>pdb|3VM5|A Chain A, Recombinant Medaka Fish Alpha-Amylase Expressed In Yeast
Pichia Pastoris
Length = 505
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 32/164 (19%)
Query: 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGP-----------FDDNSVLDKVVPGYYLRRN 539
E R M+ N++G++V +D V NH+ G+G F+ N+ VP L N
Sbjct: 78 ELRDMITRCNNVGVNVYVDAVINHMCGAGGGEGTHSSCGSWFNANNKDFPSVPYSNLDFN 137
Query: 540 SDGFIEHSTCMNNTASEHYMVE--RLI---------------IDDLLCWAVNYKVDGFRF 582
DG + + + Y V RL+ + D + ++ V GFR
Sbjct: 138 -DGKCKTGSGNIENYGDPYQVRDCRLVGLLDLALEKDYVRGKVADFMNKLIDMGVAGFRV 196
Query: 583 DLMGHIMKSTMMKAKHALHSL-TKEIHGVDGSSIYIYGEGWDFG 625
D H+ + L++L TK G GS +I+ E D G
Sbjct: 197 DACKHMWPGDLDNVYRRLNNLNTKWFPG--GSRPFIFQEVIDLG 238
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 329 ILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNA------GL 382
+ F DI + L VRD ++SD V+P +R G L T +N + +K+ A
Sbjct: 166 LFVFDDIRDHLLMVRDVNISDKPVYP-YR-GILLDTARNYYSIESIKRTIEAMAAVKLNT 223
Query: 383 THVHLLPTFQFAGVDDRKENWKSVGSL 409
H H+ + F V ++ N G+L
Sbjct: 224 FHWHITDSQSFPFVTTKRPNLYKFGAL 250
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 329 ILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNA------GL 382
+ F DI + L VRD ++SD V+P +RG L T +N + +K+ A
Sbjct: 163 LFVFDDIRDHLLMVRDVNISDKPVYP-YRGILLD-TARNYYSIESIKRTIEAMAAVKLNT 220
Query: 383 THVHLLPTFQFAGVDDRKENWKSVGSL 409
H H+ + F V ++ N G+L
Sbjct: 221 FHWHITDSQSFPFVTTKRPNLYKFGAL 247
>pdb|3EZ7|A Chain A, Partition Protein Apo Form In Space Group I4122
Length = 398
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 25/102 (24%)
Query: 862 NAIQERICFHNTGPSAVPGVIVM--SIEDG----------HEGVPG-----------LSQ 898
N +E + PS VPGV VM SI+D +E +PG + +
Sbjct: 181 NVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDK 240
Query: 899 LDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVD 940
L S+Y +I+V +S P +F+ AL N+ P+ +VD
Sbjct: 241 LKSDYDFILV--DSGPHLDAFLKNALASANILFTPLPPATVD 280
>pdb|3EZ2|A Chain A, Partition Protein-Adp Complex
pdb|3EZ2|B Chain B, Partition Protein-Adp Complex
pdb|3EZ6|A Chain A, Structure Of Para-Adp Complex:tetragonal Form
pdb|3EZ6|B Chain B, Structure Of Para-Adp Complex:tetragonal Form
Length = 398
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 25/102 (24%)
Query: 862 NAIQERICFHNTGPSAVPGVIVM--SIEDG----------HEGVPG-----------LSQ 898
N +E + PS VPGV VM SI+D +E +PG + +
Sbjct: 181 NVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDK 240
Query: 899 LDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVD 940
L S+Y +I+V +S P +F+ AL N+ P+ +VD
Sbjct: 241 LKSDYDFILV--DSGPHLDAFLKNALASANILFTPLPPATVD 280
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 208 GPLGALYAEETVSLYLWAPTAQSVSACI 235
GPLG++ ++TVSL++W P ++ + I
Sbjct: 1 GPLGSMTTKQTVSLFIWLPESKQKTLFI 28
>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 471
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQG------SGPFDDNSVLDKVVPGYYLRRNSDGFIE 545
F M + N G+ + +D V NH+ G SG D+ ++ Y S F
Sbjct: 77 FTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPY----GSGDF-- 130
Query: 546 HSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFDLMGHI 588
HS C N + V R ++ D + ++ V GFR D H+
Sbjct: 131 HSPCEVNNYQDADNVRNCELVGLRDLNAGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHM 190
Query: 589 MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFG--EVAKN 630
+ L +L + DG+ +IY E D G ++KN
Sbjct: 191 SPGDLSVIFDGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKN 234
>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
Amaranth Alpha-Amylase Inhibitor
pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
Length = 471
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 492 FRRMVQALNHIGLHVVLDVVYNHLQG------SGPFDDNSVLDKVVPGYYLRRNSDGFIE 545
F M + N G+ + +D V NH+ G SG D+ ++ Y S F
Sbjct: 77 FTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPY----GSGDF-- 130
Query: 546 HSTCMNNTASEHYMVE-----------------RLIIDDLLCWAVNYKVDGFRFDLMGHI 588
HS C N + V R ++ D + ++ V GFR D H+
Sbjct: 131 HSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHM 190
Query: 589 MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFG--EVAKN 630
+ L +L + DG+ +IY E D G ++KN
Sbjct: 191 SPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKN 234
>pdb|3R07|C Chain C, Structural Analysis Of An Archaeal Lipoylation System. A
Bi-Partite Lipoate Protein Ligase And Its E2 Lipoyl
Domain From Thermoplasma Acidophilum
Length = 91
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 587 HIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGI 646
H+M S KAK L +T ++ G I+I G+ + F E +N + L G+ I
Sbjct: 5 HMMYSKNWKAKKGLIRVTLDLDGNRIKDIHISGDFFMFPE-----DSINRLEDMLRGSSI 59
Query: 647 GSFNDRIRD 655
ND IRD
Sbjct: 60 EKINDIIRD 68
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 64/175 (36%), Gaps = 34/175 (19%)
Query: 439 VLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLW------------GVPKGSYASNPNGS 486
V+ + P D Q A DG++ + PV W G +G + + N +
Sbjct: 27 VVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKN 86
Query: 487 CR---TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP-----------FDDNSVLDKVVP 532
R + R+ AL G+ V+ DVV NH+ P F N D P
Sbjct: 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCAD---P 143
Query: 533 GYYLRRNSDG--FIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585
G Y DG FI +N + H V + D+ Y GFRF+ +
Sbjct: 144 GNYPNDCDDGDRFIGGDADLN---TGHPQVYGMFRDEFTNLRSQYGAGGFRFNFV 195
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 472 WGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHL----QGSGPFDDNSVL 527
WG SY + + +FR +V AL+ G+ V++D V H G FD +
Sbjct: 295 WGYQVTSYYAPTSRFGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDAWALGRFDGTPLY 354
Query: 528 DKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGH 587
+ P +R ++ T + + V ++ + L W + +DG R D +
Sbjct: 355 EHSDP----KRGEQ--LDWGTYVFDFGRPE--VRNFLVANALYWLQEFHIDGLRVDAVAS 406
Query: 588 IM 589
++
Sbjct: 407 ML 408
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 521 FDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568
DD S L KVVP L RNSDG +S N T E+Y ++ LI++D+
Sbjct: 839 LDDISALAKVVPVNGLVRNSDG--SYSKSFNETI-EYYPLQ-LIVEDV 882
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,886,646
Number of Sequences: 62578
Number of extensions: 1389366
Number of successful extensions: 3439
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3190
Number of HSP's gapped (non-prelim): 165
length of query: 971
length of database: 14,973,337
effective HSP length: 108
effective length of query: 863
effective length of database: 8,214,913
effective search space: 7089469919
effective search space used: 7089469919
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)