Query 002079
Match_columns 971
No_of_seqs 437 out of 2746
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 16:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02877 alpha-amylase/limit d 100.0 1E-204 3E-209 1833.3 76.7 870 67-969 72-970 (970)
2 TIGR02103 pullul_strch alpha-1 100.0 3E-194 8E-199 1747.9 72.0 859 90-969 1-898 (898)
3 TIGR02102 pullulan_Gpos pullul 100.0 4E-110 9E-115 1029.7 61.3 644 139-969 269-1006(1111)
4 TIGR02104 pulA_typeI pullulana 100.0 2.3E-94 5E-99 862.2 53.4 561 200-931 2-594 (605)
5 PRK03705 glycogen debranching 100.0 7.3E-93 1.6E-97 849.1 51.9 559 206-967 8-657 (658)
6 COG1523 PulA Type II secretory 100.0 1.6E-93 3.5E-98 847.7 44.3 578 206-968 16-692 (697)
7 TIGR02100 glgX_debranch glycog 100.0 1.3E-91 2.8E-96 843.5 55.3 576 206-967 3-688 (688)
8 PRK14510 putative bifunctional 100.0 1.5E-78 3.3E-83 764.9 50.3 541 205-923 11-648 (1221)
9 TIGR02402 trehalose_TreZ malto 100.0 2E-72 4.3E-77 664.3 40.6 492 219-919 1-541 (542)
10 KOG0470 1,4-alpha-glucan branc 100.0 1.8E-71 3.8E-76 643.6 36.1 696 92-969 6-754 (757)
11 TIGR01515 branching_enzym alph 100.0 5.3E-65 1.2E-69 609.5 46.8 303 209-623 16-351 (613)
12 PRK05402 glycogen branching en 100.0 1.1E-64 2.4E-69 616.9 49.1 532 208-969 118-725 (726)
13 PRK12313 glycogen branching en 100.0 1.4E-64 3E-69 608.8 47.4 534 208-969 25-629 (633)
14 PRK14706 glycogen branching en 100.0 1.2E-61 2.6E-66 579.4 48.3 528 208-968 25-622 (639)
15 PRK12568 glycogen branching en 100.0 4.7E-61 1E-65 574.0 48.3 531 209-968 126-729 (730)
16 PRK14705 glycogen branching en 100.0 4.4E-60 9.5E-65 588.6 47.4 303 209-623 622-960 (1224)
17 PLN02447 1,4-alpha-glucan-bran 100.0 2.7E-56 5.8E-61 534.1 50.1 304 208-623 105-448 (758)
18 PRK10785 maltodextrin glucosid 100.0 1.6E-51 3.4E-56 492.3 40.3 471 214-923 16-568 (598)
19 COG0296 GlgB 1,4-alpha-glucan 100.0 8.3E-52 1.8E-56 485.1 35.7 311 209-624 25-360 (628)
20 PLN02960 alpha-amylase 100.0 2.8E-50 6E-55 481.9 45.9 270 247-623 316-613 (897)
21 TIGR02403 trehalose_treC alpha 100.0 1.3E-49 2.8E-54 471.3 33.3 439 332-966 2-542 (543)
22 TIGR02456 treS_nterm trehalose 100.0 3.5E-49 7.5E-54 467.7 35.3 436 332-966 3-537 (539)
23 PRK10933 trehalose-6-phosphate 100.0 2.1E-48 4.6E-53 460.9 36.0 448 331-968 7-551 (551)
24 PRK09505 malS alpha-amylase; R 100.0 1.6E-45 3.4E-50 441.8 31.9 385 330-913 185-682 (683)
25 PRK09441 cytoplasmic alpha-amy 100.0 1E-41 2.3E-46 398.9 31.7 368 358-966 19-479 (479)
26 PF11852 DUF3372: Domain of un 100.0 1.8E-42 4E-47 347.6 10.8 168 797-969 1-168 (168)
27 PF00128 Alpha-amylase: Alpha 100.0 2.6E-39 5.7E-44 351.1 14.4 178 358-625 1-202 (316)
28 PLN00196 alpha-amylase; Provis 100.0 4.2E-36 9.1E-41 345.4 25.4 174 357-624 40-232 (428)
29 PLN02361 alpha-amylase 100.0 4.4E-35 9.6E-40 333.7 28.2 167 371-624 32-208 (401)
30 PLN03244 alpha-amylase; Provis 100.0 2.6E-33 5.6E-38 330.7 39.9 236 249-623 323-588 (872)
31 COG0366 AmyA Glycosidases [Car 100.0 8.9E-32 1.9E-36 314.0 24.3 190 335-606 1-232 (505)
32 PLN02784 alpha-amylase 100.0 2.1E-30 4.6E-35 310.1 21.0 190 333-624 497-702 (894)
33 PRK13840 sucrose phosphorylase 100.0 9.5E-29 2.1E-33 286.8 23.7 170 358-624 17-237 (495)
34 KOG0471 Alpha-amylase [Carbohy 100.0 4.7E-28 1E-32 286.9 27.9 474 332-966 15-544 (545)
35 TIGR03852 sucrose_gtfA sucrose 100.0 1.4E-28 3E-33 283.9 21.6 144 464-623 45-233 (470)
36 TIGR02455 TreS_stutzeri trehal 99.9 4.1E-24 8.9E-29 249.7 30.5 149 373-589 79-300 (688)
37 TIGR02401 trehalose_TreY malto 99.9 2.5E-24 5.4E-29 260.5 26.1 179 358-627 13-290 (825)
38 smart00642 Aamy Alpha-amylase 99.8 6.8E-19 1.5E-23 179.5 8.8 97 339-517 1-97 (166)
39 cd02860 Pullulanase_N_term Pul 99.7 7.3E-18 1.6E-22 157.6 11.5 96 210-310 1-97 (100)
40 KOG2212 Alpha-amylase [Carbohy 99.7 1E-15 2.2E-20 166.0 15.2 151 466-626 79-257 (504)
41 cd02856 Glycogen_debranching_e 99.6 8.5E-16 1.8E-20 144.6 11.1 91 209-302 1-95 (103)
42 PF14872 GHL5: Hypothetical gl 99.6 7E-15 1.5E-19 169.9 16.4 338 208-605 26-422 (811)
43 cd02852 Isoamylase_N_term Isoa 99.6 4.9E-15 1.1E-19 142.9 11.0 94 211-304 1-101 (119)
44 cd02853 MTHase_N_term Maltooli 99.5 9.8E-14 2.1E-18 126.2 8.8 81 211-309 1-85 (85)
45 PRK14511 maltooligosyl trehalo 99.5 5.1E-14 1.1E-18 172.3 8.8 82 358-519 17-98 (879)
46 PF02922 CBM_48: Carbohydrate- 99.4 5E-13 1.1E-17 120.7 9.4 79 209-294 1-85 (85)
47 PRK14507 putative bifunctional 99.4 2.6E-13 5.6E-18 174.9 6.3 80 358-517 755-834 (1693)
48 cd02854 Glycogen_branching_enz 99.1 1.4E-10 3E-15 108.9 8.8 78 215-301 3-89 (99)
49 cd02855 Glycogen_branching_enz 99.1 3.7E-10 8E-15 105.9 10.7 84 209-301 9-99 (106)
50 TIGR01531 glyc_debranch glycog 99.0 2.4E-10 5.3E-15 144.1 7.3 89 357-522 128-217 (1464)
51 COG3280 TreY Maltooligosyl tre 99.0 5.7E-10 1.2E-14 131.9 6.0 76 370-518 21-96 (889)
52 cd02858 Esterase_N_term Estera 98.8 1.2E-08 2.6E-13 93.1 9.2 69 216-298 5-74 (85)
53 PF11941 DUF3459: Domain of un 98.4 1.2E-06 2.6E-11 79.9 8.8 89 842-965 1-89 (89)
54 PRK05402 glycogen branching en 98.3 8.2E-07 1.8E-11 110.1 8.1 76 209-297 20-98 (726)
55 cd02688 E_set E or "early" set 98.2 5.6E-06 1.2E-10 73.3 7.9 56 217-276 4-61 (83)
56 cd02861 E_set_proteins_like E 98.0 1.7E-05 3.6E-10 71.9 7.9 68 218-301 3-73 (82)
57 PF14701 hDGE_amylase: glucano 98.0 1.4E-05 3E-10 92.3 8.5 84 371-522 25-109 (423)
58 PF14871 GHL6: Hypothetical gl 97.8 0.00013 2.9E-09 72.2 11.2 97 465-584 27-132 (132)
59 PF02638 DUF187: Glycosyl hydr 97.7 0.00018 3.8E-09 81.1 11.5 88 492-584 72-162 (311)
60 PRK14511 maltooligosyl trehalo 97.6 0.00015 3.2E-09 90.5 9.4 120 760-923 711-840 (879)
61 PF10438 Cyc-maltodext_C: Cycl 96.6 0.0052 1.1E-07 55.6 6.7 70 878-966 8-77 (78)
62 PF02324 Glyco_hydro_70: Glyco 96.4 0.0084 1.8E-07 72.2 8.4 34 476-516 640-673 (809)
63 COG1649 Uncharacterized protei 96.4 0.017 3.8E-07 67.1 10.7 90 492-587 117-210 (418)
64 PF02806 Alpha-amylase_C: Alph 95.8 0.037 8.1E-07 51.0 8.0 76 878-968 8-94 (95)
65 cd06597 GH31_transferase_CtsY 95.8 0.042 9E-07 62.9 9.8 94 491-586 86-187 (340)
66 PF13199 Glyco_hydro_66: Glyco 95.6 0.063 1.4E-06 65.0 10.9 95 488-588 168-270 (559)
67 KOG3625 Alpha amylase [Carbohy 95.5 0.014 3.1E-07 71.7 4.9 43 471-521 185-228 (1521)
68 cd06594 GH31_glucosidase_YihQ 95.4 0.027 5.9E-07 63.8 6.4 92 491-588 72-168 (317)
69 PF00150 Cellulase: Cellulase 95.0 0.32 6.9E-06 52.8 13.1 27 487-513 59-85 (281)
70 cd06592 GH31_glucosidase_KIAA1 94.9 0.057 1.2E-06 60.8 7.0 89 491-586 71-165 (303)
71 cd06593 GH31_xylosidase_YicI Y 94.5 0.085 1.8E-06 59.3 7.4 91 492-590 68-163 (308)
72 PF13200 DUF4015: Putative gly 94.4 0.14 3E-06 58.1 8.6 88 489-587 60-148 (316)
73 cd06599 GH31_glycosidase_Aec37 94.2 0.096 2.1E-06 59.3 6.9 89 491-586 74-168 (317)
74 PF02065 Melibiase: Melibiase; 93.9 0.38 8.3E-06 56.3 11.1 89 491-588 105-195 (394)
75 cd06591 GH31_xylosidase_XylS X 93.8 0.14 3E-06 58.1 7.3 89 491-586 67-159 (319)
76 PLN02960 alpha-amylase 93.2 0.093 2E-06 66.0 4.8 55 209-263 119-177 (897)
77 cd06600 GH31_MGAM-like This fa 93.2 0.17 3.6E-06 57.4 6.5 91 491-586 65-160 (317)
78 cd06602 GH31_MGAM_SI_GAA This 93.1 0.23 5.1E-06 56.8 7.6 93 493-587 69-166 (339)
79 cd02859 AMPKbeta_GBD_like AMP- 92.3 0.38 8.2E-06 43.5 6.4 50 218-275 3-55 (79)
80 PF08533 Glyco_hydro_42C: Beta 92.1 0.21 4.6E-06 42.4 4.3 47 904-967 12-58 (58)
81 cd06598 GH31_transferase_CtsZ 91.9 0.31 6.7E-06 55.3 6.5 89 491-586 71-164 (317)
82 cd02857 CD_pullulan_degrading_ 91.2 0.88 1.9E-05 43.1 8.0 62 209-275 12-80 (116)
83 PRK10426 alpha-glucosidase; Pr 91.0 1.3 2.7E-05 55.1 11.0 92 491-589 270-366 (635)
84 cd06542 GH18_EndoS-like Endo-b 90.0 1.9 4E-05 47.1 10.2 64 490-586 51-114 (255)
85 cd02875 GH18_chitobiase Chitob 89.8 1 2.3E-05 52.0 8.4 57 493-587 67-123 (358)
86 cd02871 GH18_chitinase_D-like 89.2 2.4 5.2E-05 48.0 10.6 79 490-604 60-142 (312)
87 cd06595 GH31_xylosidase_XylS-l 89.1 0.58 1.3E-05 52.4 5.6 83 491-584 75-157 (292)
88 PF01055 Glyco_hydro_31: Glyco 89.1 0.31 6.8E-06 57.4 3.6 94 491-588 84-182 (441)
89 COG1523 PulA Type II secretory 88.9 0.94 2E-05 56.4 7.5 94 202-302 59-156 (697)
90 PRK14582 pgaB outer membrane N 88.8 2.9 6.3E-05 52.1 11.6 35 553-587 435-469 (671)
91 PRK10658 putative alpha-glucos 88.7 0.74 1.6E-05 57.4 6.6 88 491-586 326-418 (665)
92 cd06545 GH18_3CO4_chitinase Th 88.6 2.3 5E-05 46.5 9.6 63 491-586 47-109 (253)
93 smart00632 Aamy_C Aamy_C domai 88.2 2.3 5.1E-05 38.5 7.8 66 880-967 9-79 (81)
94 cd06603 GH31_GANC_GANAB_alpha 86.6 1.3 2.8E-05 50.7 6.5 90 491-585 65-161 (339)
95 cd06604 GH31_glucosidase_II_Ma 85.3 1.6 3.5E-05 49.9 6.4 90 491-586 65-159 (339)
96 PF09154 DUF1939: Domain of un 84.5 2.1 4.6E-05 36.7 5.1 55 906-965 1-56 (57)
97 cd06547 GH85_ENGase Endo-beta- 82.6 3.8 8.2E-05 47.2 7.9 103 463-604 28-132 (339)
98 COG1501 Alpha-glucosidases, fa 81.7 2.8 6E-05 53.2 6.9 92 491-589 322-418 (772)
99 PF02449 Glyco_hydro_42: Beta- 81.0 6 0.00013 45.8 8.9 105 491-604 48-160 (374)
100 cd06589 GH31 The enzymes of gl 79.8 2.3 5E-05 46.9 4.8 51 491-587 67-117 (265)
101 PF02446 Glyco_hydro_77: 4-alp 79.2 3.8 8.3E-05 49.5 6.7 171 490-756 192-390 (496)
102 PRK12568 glycogen branching en 78.0 5.6 0.00012 50.1 7.8 74 209-297 29-105 (730)
103 PRK11052 malQ 4-alpha-glucanot 77.8 18 0.00039 45.6 12.1 30 357-393 161-190 (695)
104 PLN02635 disproportionating en 77.1 14 0.0003 45.2 10.5 21 492-512 226-246 (538)
105 PLN02763 hydrolase, hydrolyzin 77.0 5.3 0.00012 51.7 7.3 89 491-585 242-335 (978)
106 PRK14508 4-alpha-glucanotransf 76.9 20 0.00044 43.5 11.8 21 492-512 200-220 (497)
107 cd06546 GH18_CTS3_chitinase GH 75.8 21 0.00046 39.4 10.8 79 491-602 60-138 (256)
108 PF02324 Glyco_hydro_70: Glyco 74.4 4.8 0.00011 49.6 5.6 97 550-659 143-253 (809)
109 PF01120 Alpha_L_fucos: Alpha- 71.8 18 0.00039 41.7 9.4 97 491-606 139-238 (346)
110 cd02874 GH18_CFLE_spore_hydrol 71.3 14 0.00031 41.5 8.3 84 492-604 47-130 (313)
111 PRK05692 hydroxymethylglutaryl 71.2 53 0.0011 37.0 12.6 78 489-604 119-197 (287)
112 PF02903 Alpha-amylase_N: Alph 70.6 11 0.00023 36.6 6.2 63 214-276 18-89 (120)
113 cd06564 GH20_DspB_LnbB-like Gl 69.0 40 0.00088 38.4 11.3 74 489-576 81-155 (326)
114 COG1640 MalQ 4-alpha-glucanotr 68.6 1.3E+02 0.0028 36.9 15.6 20 739-758 392-411 (520)
115 cd06601 GH31_lyase_GLase GLase 67.2 13 0.00028 42.7 6.9 68 491-585 65-132 (332)
116 smart00812 Alpha_L_fucos Alpha 65.6 42 0.00091 39.4 10.7 92 491-606 129-225 (384)
117 TIGR01531 glyc_debranch glycog 64.3 14 0.0003 49.5 7.0 64 554-627 485-548 (1464)
118 PLN03244 alpha-amylase; Provis 62.7 9.2 0.0002 48.4 4.8 147 764-969 702-868 (872)
119 PRK14705 glycogen branching en 60.9 24 0.00052 47.1 8.3 147 764-968 1061-1223(1224)
120 cd06562 GH20_HexA_HexB-like Be 58.7 64 0.0014 37.3 10.6 79 490-576 70-149 (348)
121 TIGR00217 malQ 4-alpha-glucano 57.6 96 0.0021 37.9 12.2 22 492-513 214-235 (513)
122 PRK14507 putative bifunctional 54.9 20 0.00042 49.3 6.2 66 554-620 1045-1112(1693)
123 cd06568 GH20_SpHex_like A subg 53.3 63 0.0014 37.1 9.3 74 489-575 74-153 (329)
124 PF14488 DUF4434: Domain of un 51.9 44 0.00096 34.6 7.0 24 491-514 66-89 (166)
125 PRK14510 putative bifunctional 51.4 64 0.0014 43.5 10.1 32 357-395 742-773 (1221)
126 PF00704 Glyco_hydro_18: Glyco 50.2 33 0.00071 38.5 6.3 47 557-603 96-152 (343)
127 PF07745 Glyco_hydro_53: Glyco 48.8 39 0.00085 38.9 6.6 29 489-517 57-85 (332)
128 TIGR01370 cysRS possible cyste 48.5 89 0.0019 35.9 9.3 100 470-588 65-172 (315)
129 KOG1065 Maltase glucoamylase a 47.9 44 0.00095 42.5 7.3 89 491-585 352-447 (805)
130 cd00598 GH18_chitinase-like Th 47.6 35 0.00076 35.5 5.7 34 556-589 84-117 (210)
131 PF03198 Glyco_hydro_72: Gluca 45.5 26 0.00057 39.9 4.5 23 493-515 82-104 (314)
132 cd02877 GH18_hevamine_XipI_cla 45.2 95 0.0021 34.9 8.9 78 490-604 59-148 (280)
133 cd06563 GH20_chitobiase-like T 45.2 1.8E+02 0.0039 33.7 11.4 77 489-575 85-164 (357)
134 PF01301 Glyco_hydro_35: Glyco 45.1 19 0.0004 41.2 3.3 21 490-510 63-83 (319)
135 cd06549 GH18_trifunctional GH1 43.0 47 0.001 37.3 6.1 49 555-604 83-131 (298)
136 cd06543 GH18_PF-ChiA-like PF-C 42.5 1E+02 0.0022 35.0 8.6 79 491-605 55-135 (294)
137 KOG3625 Alpha amylase [Carbohy 41.7 60 0.0013 41.8 6.9 62 556-627 509-570 (1521)
138 PLN02950 4-alpha-glucanotransf 41.1 2.6E+02 0.0057 36.7 12.9 57 218-275 154-218 (909)
139 cd02876 GH18_SI-CLP Stabilin-1 41.0 32 0.0007 38.9 4.5 29 556-584 88-116 (318)
140 PF03644 Glyco_hydro_85: Glyco 40.9 19 0.00041 41.1 2.5 41 463-513 24-65 (311)
141 PF13204 DUF4038: Protein of u 40.6 54 0.0012 36.9 6.1 34 470-514 77-110 (289)
142 cd02879 GH18_plant_chitinase_c 40.4 57 0.0012 36.8 6.2 47 556-602 88-141 (299)
143 PF14701 hDGE_amylase: glucano 39.9 61 0.0013 38.6 6.5 51 554-606 372-422 (423)
144 TIGR03849 arch_ComA phosphosul 38.2 48 0.001 36.5 4.9 21 490-510 100-120 (237)
145 cd06548 GH18_chitinase The GH1 37.6 72 0.0016 36.2 6.6 30 556-585 105-134 (322)
146 smart00636 Glyco_18 Glycosyl h 37.5 70 0.0015 36.2 6.5 32 556-587 87-118 (334)
147 COG3280 TreY Maltooligosyl tre 35.7 16 0.00034 45.8 0.9 98 762-889 718-816 (889)
148 cd06544 GH18_narbonin Narbonin 34.9 62 0.0013 35.8 5.3 28 559-586 96-123 (253)
149 PF05913 DUF871: Bacterial pro 34.8 37 0.00081 39.5 3.7 25 489-513 46-70 (357)
150 PF15640 Tox-MPTase4: Metallop 33.5 47 0.001 33.0 3.5 24 487-510 19-42 (132)
151 cd02742 GH20_hexosaminidase Be 33.1 74 0.0016 36.0 5.7 75 490-575 72-147 (303)
152 cd07944 DRE_TIM_HOA_like 4-hyd 32.7 2.5E+02 0.0055 31.2 9.7 72 489-604 108-180 (266)
153 cd06569 GH20_Sm-chitobiase-lik 31.6 1.3E+02 0.0028 36.1 7.6 29 489-517 96-125 (445)
154 cd06570 GH20_chitobiase-like_1 30.8 1.6E+02 0.0035 33.7 7.9 75 490-574 68-145 (311)
155 cd06565 GH20_GcnA-like Glycosy 30.7 80 0.0017 35.7 5.4 72 489-576 59-131 (301)
156 cd02872 GH18_chitolectin_chito 30.4 95 0.0021 35.7 6.1 31 556-586 92-122 (362)
157 PF02679 ComA: (2R)-phospho-3- 29.0 50 0.0011 36.5 3.3 32 357-388 73-104 (244)
158 COG3589 Uncharacterized conser 28.5 46 0.00099 38.3 2.9 23 490-512 49-71 (360)
159 COG2342 Predicted extracellula 28.4 4.3E+02 0.0092 30.1 10.2 108 469-588 43-151 (300)
160 PF15260 FAM219A: Protein fami 28.3 23 0.0005 34.9 0.5 8 56-63 112-119 (125)
161 PF00490 ALAD: Delta-aminolevu 27.8 1.1E+02 0.0025 35.0 5.9 156 335-604 28-185 (324)
162 PF13167 GTP-bdg_N: GTP-bindin 27.5 4.1E+02 0.0089 25.3 8.6 71 488-600 9-79 (95)
163 PF06051 DUF928: Domain of Unk 26.7 2.7E+02 0.0057 29.6 8.1 66 210-276 28-99 (189)
164 cd04824 eu_ALAD_PBGS_cysteine_ 26.6 2.3E+02 0.0049 32.6 7.8 92 479-604 86-179 (320)
165 PLN03059 beta-galactosidase; P 25.7 1.2E+02 0.0026 39.2 6.2 21 489-509 97-117 (840)
166 cd08560 GDPD_EcGlpQ_like_1 Gly 25.7 1.8E+02 0.004 33.9 7.3 68 492-585 280-347 (356)
167 cd02878 GH18_zymocin_alpha Zym 25.3 1.2E+02 0.0025 35.0 5.6 29 557-585 88-116 (345)
168 cd00384 ALAD_PBGS Porphobilino 24.9 3.7E+02 0.008 30.9 9.1 92 478-604 82-175 (314)
169 PRK13384 delta-aminolevulinic 24.9 2.4E+02 0.0052 32.5 7.7 93 477-604 91-185 (322)
170 PLN02808 alpha-galactosidase 24.9 1.9E+02 0.0042 34.2 7.3 58 904-967 321-383 (386)
171 PF13860 FlgD_ig: FlgD Ig-like 24.8 4E+02 0.0087 24.0 7.9 57 218-276 13-77 (81)
172 cd03174 DRE_TIM_metallolyase D 24.6 4E+02 0.0086 28.8 9.4 75 489-605 114-189 (265)
173 COG3867 Arabinogalactan endo-1 24.6 1.9E+02 0.0042 33.0 6.7 26 489-514 103-128 (403)
174 cd07938 DRE_TIM_HMGL 3-hydroxy 24.5 5.1E+02 0.011 28.9 10.3 78 489-604 113-191 (274)
175 TIGR03356 BGL beta-galactosida 24.4 1.5E+02 0.0032 35.4 6.4 24 488-511 92-115 (427)
176 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.9 4.8E+02 0.01 29.1 10.0 73 489-603 117-190 (275)
177 cd07945 DRE_TIM_CMS Leptospira 23.7 5E+02 0.011 29.2 10.1 76 488-604 113-189 (280)
178 PF13380 CoA_binding_2: CoA bi 23.3 1.4E+02 0.0031 28.8 5.0 21 369-389 67-87 (116)
179 cd07939 DRE_TIM_NifV Streptomy 23.2 4.6E+02 0.0099 28.8 9.5 72 489-604 109-181 (259)
180 TIGR03602 streptolysinS bacter 22.9 38 0.00082 28.2 0.7 11 51-61 21-31 (56)
181 PLN02746 hydroxymethylglutaryl 22.9 4.4E+02 0.0096 30.7 9.6 79 488-604 160-239 (347)
182 cd04823 ALAD_PBGS_aspartate_ri 22.9 3.4E+02 0.0074 31.3 8.4 93 477-604 86-180 (320)
183 PF07894 DUF1669: Protein of u 22.4 56 0.0012 36.9 2.2 23 488-511 134-157 (284)
184 PRK10076 pyruvate formate lyas 22.4 2E+02 0.0043 31.1 6.3 20 489-508 192-211 (213)
185 PRK12858 tagatose 1,6-diphosph 22.3 8.5E+02 0.018 28.4 11.7 69 488-588 141-211 (340)
186 cd03409 Chelatase_Class_II Cla 22.3 71 0.0015 29.3 2.6 25 370-394 47-71 (101)
187 PRK09283 delta-aminolevulinic 22.0 2.8E+02 0.0061 32.0 7.5 93 477-604 89-183 (323)
188 PRK12812 flgD flagellar basal 21.9 3.3E+02 0.0071 30.5 8.0 58 217-277 128-194 (259)
189 cd05816 CBM20_DPE2_repeat2 Dis 21.8 2.2E+02 0.0048 26.6 5.8 58 218-275 1-65 (99)
190 PRK08195 4-hyroxy-2-oxovalerat 21.7 4.9E+02 0.011 30.1 9.7 42 562-604 144-186 (337)
191 cd07940 DRE_TIM_IPMS 2-isoprop 21.4 5E+02 0.011 28.6 9.5 72 489-604 113-185 (268)
192 COG2730 BglC Endoglucanase [Ca 21.2 1.6E+02 0.0035 34.7 5.8 20 491-510 117-136 (407)
193 PF01212 Beta_elim_lyase: Beta 20.8 84 0.0018 35.4 3.3 24 488-511 143-166 (290)
194 cd05817 CBM20_DSP Dual-specifi 20.1 2E+02 0.0042 27.1 5.1 57 219-275 2-63 (100)
No 1
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.3e-204 Score=1833.31 Aligned_cols=870 Identities=80% Similarity=1.307 Sum_probs=825.4
Q ss_pred cccccccccccccccCCCCccccCcccceeEEEeCCeeEeeCCCCCCeEEEEEeCCCCeeeecceeeccceEEEeeccCC
Q 002079 67 SSSSSMPLELSTSASDQDDDLGDSLLYSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKG 146 (971)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (971)
+..+.+.+|++...+.++++ |++++|||||++||+|+++..+.+++||+|++|+|++++++|+|++..++|++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~----~~~~~a~w~~~~t~~w~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (970)
T PLN02877 72 SASSFFTLELSVPTSLFQDD----LLYSRAYWVTESIIAWNVDVGDGSCFLYASKTAGLSVSDDGVEGYDLVVKLEEDSG 147 (970)
T ss_pred CccccccccccccccCCcCc----cccceEEEecCceEEEccCCCCceEEEEEcCCCCeeeccCceeccceEEEeecCCC
Confidence 44445667788888888887 89999999999999999887788899999999999999999999998889988778
Q ss_pred CCChhhhhcCCcccccceeeeCCccchHHHHHhhhhc----cccccccccccccccccccccCCCCCCccEEeCCeeEEE
Q 002079 147 GLPANVIEKFPHIRDYKAFKVPAGSDAKLLLKCQLAV----ADRKCSDATGLQLPGILDELFSYDGPLGALYAEETVSLY 222 (971)
Q Consensus 147 ~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~l~~q~~~----~~g~~~~~t~vq~~~~lD~~y~~~~~LGa~~~~~~v~F~ 222 (971)
+|+++|++|||||++|+||+++...+++++|||||+| ++|+++++|+||+||+||++|+|+++|||++.+++++|+
T Consensus 148 ~l~~~~~~~~phl~~~~a~~~~~~~~~~~~l~~ql~~~~~~~~g~~~~at~vq~~~~lD~~y~y~~~LGA~~~~~g~~F~ 227 (970)
T PLN02877 148 GLPPNVIEKFPHIRGYRAFKVPSTVDVKDLLKCQLAVAAFDADGKCTDATGLQLPGVLDDLFAYDGPLGAHFSKDAVSLY 227 (970)
T ss_pred CCCHhHHhcCccccCCcceeCCccccHHHHhhcceEEEEECCCCCEEccccccchhhhhhhccCCCCCcceEecCCEEEE
Confidence 9999999999999999999999888999999999997 789999999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEecCCCCCCCceEEecccCCCEEEEEeCCCCCCceEEEEEEEecCCCccccceeecCccccccccCCC
Q 002079 223 LWAPTAQSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGR 302 (971)
Q Consensus 223 vWAPtA~~V~L~ly~~~~~~~~~~~~~M~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~~~~vtDPYa~~ls~ng~ 302 (971)
||||+|++|+|++|++.++..+...++|++.+|||++++++.++|.+|+|+|++|+|.++++++++++||||++++.||.
T Consensus 228 VWAPtA~~V~L~lyd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G~~Y~Y~V~v~~p~~g~~~~~~v~DPYA~als~ng~ 307 (970)
T PLN02877 228 LWAPTAQAVSLCLYDDPRGKEPLEIVQLKESNGVWSVEGPKSWEGCYYVYEVSVYHPSTGKVETCYANDPYARGLSADGR 307 (970)
T ss_pred EECCCCCEEEEEEecCCCCccceEEecccCCCCEEEEEeccCCCCCeeEEEEeecccCCCcccccccCCccceEEecCCC
Confidence 99999999999999976544455678898889999999999999999999999999999988888999999999999999
Q ss_pred ccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCC
Q 002079 303 RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGL 382 (971)
Q Consensus 303 ~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGv 382 (971)
+|+++|+++..++|++|+.....+|.+.+++|+||||+||||||..+++++..+||||+||+|+++++|+||++|++|||
T Consensus 308 ~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGV 387 (970)
T PLN02877 308 RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGL 387 (970)
T ss_pred ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCC
Confidence 99999999988999999875334676778999999999999999999888999999999999999999999999999999
Q ss_pred cEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCC
Q 002079 383 THVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDG 462 (971)
Q Consensus 383 T~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~ 462 (971)
|||||||+|||++++|.+.+++++ +++.|+.+++++++||+++.++++.+.
T Consensus 388 ThVeLLPvfDf~tvdE~~~~~~~~-----------------------------~~~~l~~~~~~s~~~q~~v~~~~~~d~ 438 (970)
T PLN02877 388 THVHLLPTFQFGSVDDEKENWKCV-----------------------------DPKELEKLPPDSEEQQAAITAIQDDDG 438 (970)
T ss_pred CEEEeCCccccCCccccccccccc-----------------------------ccchhccccccchhhhhcccccccCCC
Confidence 999999999999999988777655 456788999999999999999999999
Q ss_pred CCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCC
Q 002079 463 YNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDG 542 (971)
Q Consensus 463 ~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G 542 (971)
|||||||.|||+||+|||++|+++.||+|||+||++||++||+||||||||||+++|++...++|++++|+||+|.+++|
T Consensus 439 yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G 518 (970)
T PLN02877 439 YNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDG 518 (970)
T ss_pred CCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCCCCcEEecccc
Q 002079 543 FIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGW 622 (971)
Q Consensus 543 ~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgW 622 (971)
.+++++||+++|+||+||+|||+||++||++||||||||||+|+||++++|++++++|++++++.++++|+++|||||||
T Consensus 519 ~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW 598 (970)
T PLN02877 519 FIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGW 598 (970)
T ss_pred CcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCcccccchHHHHHHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHH
Q 002079 623 DFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQ 702 (971)
Q Consensus 623 d~gev~~~~~~~~a~q~~~~gtgig~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~ 702 (971)
+++++++++++++|+|.||++++||+||||+||+||||++|+++..|||++|++.+||+..+|+...++.+|++..|+||
T Consensus 599 ~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~ 678 (970)
T PLN02877 599 DFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQ 678 (970)
T ss_pred CCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999988887778888999999999
Q ss_pred hhhcccchhhhccccCCcccccccccccCCCCccccCCCCceeeeccccccccHHHHhcCC-------------------
Q 002079 703 VGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK------------------- 763 (971)
Q Consensus 703 ~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~~------------------- 763 (971)
.||+|||++|.|++++|..++|+++.+|+|+|++|+.+|.++||||++|||+||||.++++
T Consensus 679 ~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~a 758 (970)
T PLN02877 679 VGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPMEISVDERCRINHLATS 758 (970)
T ss_pred HHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998679999999999999999999999999999998765
Q ss_pred ------CeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHH
Q 002079 764 ------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHIL 837 (971)
Q Consensus 764 ------GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~ 837 (971)
||||||+|+|++|||++++||||||||||++||++++||||+||||+.+|+++|++|+++|+||+++|++++|.
T Consensus 759 iv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~ 838 (970)
T PLN02877 759 IIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHIL 838 (970)
T ss_pred HHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcE
Q 002079 838 AALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEV 917 (971)
Q Consensus 838 ~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~ 917 (971)
.++++||+||+|||+||+||++++++|+++|.|+++|+++++|||+|+|+++.+..++.+++|+.++.|+||||++++++
T Consensus 839 ~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~ 918 (970)
T PLN02877 839 AALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEV 918 (970)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCCccE
Confidence 99999999999999999999999999999999999999999999999999976555567899999999999999999999
Q ss_pred EEEcCCCCCCceEeecceeccccccccCcceeecCcEEEEcCceEEEEEEcc
Q 002079 918 SFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFVEPR 969 (971)
Q Consensus 918 ~~~lp~~~~~~~~l~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVfv~~~ 969 (971)
++++|.+.+.+++||++|+.+.|++++.+.+...+|+|||||+|++|||++|
T Consensus 919 ~~~~~~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~~~tvp~~t~aVfv~~~ 970 (970)
T PLN02877 919 SFESPALKGRTLELHPVQVMSADEVVKKSVYEASSGVFTVPPRTTAVFVEHR 970 (970)
T ss_pred EEecccccccceeecccccccccceeccceeeccCCeEEecCceEEEEEeeC
Confidence 9999998888999999999999999998888878899999999999999975
No 2
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=3.5e-194 Score=1747.95 Aligned_cols=859 Identities=50% Similarity=0.860 Sum_probs=788.5
Q ss_pred CcccceeEEEeCCeeEeeCCCCCCeEEEEEeCCCCeeeecceeeccceEEEeeccCCCCChhhhhcCCcccccceeeeC-
Q 002079 90 SLLYSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKGGLPANVIEKFPHIRDYKAFKVP- 168 (971)
Q Consensus 90 ~~~~~~a~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~l~~~~~~~~~- 168 (971)
+|++++|||||++||+|++..++.+++||||++|+|+++++++.|++ .|+|++.+++|+++|++|||||++|+||+++
T Consensus 1 d~~~~~a~w~~~~t~~w~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~phl~~~~a~~~~~ 79 (898)
T TIGR02103 1 DLAGARAHWVDADTILWNVAENAPSVTLYYSPSAKLKFDSDGVFGGD-RIKLTPSSGGLSQDLKMKFPHLASYKAFKLPA 79 (898)
T ss_pred CCccceEEEecCceEEEecCCCccEEEEEECCCCCeeeccCcccccc-eEEeeccCCCCCHHHHhhCcccccCcceecCc
Confidence 37899999999999999988788999999999999999999988887 7888887789999999999999999999999
Q ss_pred CccchHHHHHhhhhc----cccccccccccccccccccccCCCCC---CccEEeCCeeEEEEEcCCCCeEEEEEecCCCC
Q 002079 169 AGSDAKLLLKCQLAV----ADRKCSDATGLQLPGILDELFSYDGP---LGALYAEETVSLYLWAPTAQSVSACIYRDPLG 241 (971)
Q Consensus 169 ~~~~~~~~l~~q~~~----~~g~~~~~t~vq~~~~lD~~y~~~~~---LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~ 241 (971)
+..+++++|||||+| ++|.++++|+||+||+||++|+|+++ |||++.+++++|+||||+|++|+|++|+....
T Consensus 80 ~~~~~~~~l~~ql~~~~~~~~g~~~~at~vq~~~~lD~~y~y~~~~~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~ 159 (898)
T TIGR02103 80 DDANLRDLLKGQLVVVAYDANGILISATGVQTAGVLDALYAYAGPALSLGATLTDSGVTFRLWAPTAQQVKLHIYSASKK 159 (898)
T ss_pred chhHHHHHhhccEEEEEECCCCCEeeecccccchhhhHHhhcCCCCCCCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCC
Confidence 677899999999997 79999999999999999999999887 99999999999999999999999999986432
Q ss_pred CCCceEEec-cc-CCCEEEEEeCCCCCCceEEEEEEEecCCCccccceeecCccccccccCCCccEEEeCCCCCCCCCcc
Q 002079 242 GNPLEVVQL-KE-NDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGW 319 (971)
Q Consensus 242 ~~~~~~~~M-~~-~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~~~~vtDPYa~~ls~ng~~s~vvdl~~~~~~p~~W 319 (971)
....++| +. ..|||++++++.++|.+|+|+|++|||.++++++++++||||++++.|+.+|+|+|+++..++|++|
T Consensus 160 --~~~~~~M~~~~~~GVWsv~v~g~~~G~~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p~~W 237 (898)
T TIGR02103 160 --VETTLPMTRDSTSGVWSAEGGSSWKGAYYRYEVTVYHPSTGKVETYLVTDPYSVSLSANSEYSQVVDLNDPALKPEGW 237 (898)
T ss_pred --ccceEeCccCCCCCEEEEEECcCCCCCEeEEEEEEecCCCCeECCeEEeCcCcceEcCCCCCeEEeCCccccCCCcch
Confidence 3467899 33 6899999999999999999999999999998888899999999999999999999999989999999
Q ss_pred cccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcc
Q 002079 320 DKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDR 399 (971)
Q Consensus 320 ~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~ 399 (971)
+.....+|.+.+++|+||||+||||||..++++++.+||||+||+|+++.+|+||++|++||||||||||||||++|+|.
T Consensus 238 ~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~ 317 (898)
T TIGR02103 238 DALAMPKPQLASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEE 317 (898)
T ss_pred hhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccc
Confidence 87622245556889999999999999999999988999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCC
Q 002079 400 KENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSY 479 (971)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sY 479 (971)
+.++..++++...+| ..++.++ .|............++.+.+.+++||+++.++++.++|||||||.|||+|||||
T Consensus 318 ~~~~~~~~~~~~~l~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSY 393 (898)
T TIGR02103 318 KEKVADIQQPFSKLC-ELNPDSK---SSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSY 393 (898)
T ss_pred cccccccccchhhhh-ccccccc---cccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhh
Confidence 877766543221112 1122222 243322223345677788889999999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHH
Q 002079 480 ASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYM 559 (971)
Q Consensus 480 gt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~m 559 (971)
+++|+|+.||+|||+||++||++||+||||||||||+.+|+.. .++|++++|+||||++.+|.+++++||+|+|+||+|
T Consensus 394 atdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~-~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~ 472 (898)
T TIGR02103 394 ATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPND-RSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRM 472 (898)
T ss_pred ccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccC-cccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHH
Confidence 9999989999999999999999999999999999999998865 589999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCCCCcEEeccccccccccccccccccccc
Q 002079 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQF 639 (971)
Q Consensus 560 v~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~ 639 (971)
|+++|+|++++|++||||||||||+|+|+++++|++++++|++++| ++|||||+|+++++..+.++.+++|.
T Consensus 473 Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~p--------di~l~GEgW~~~~~~~~~~~~~a~~~ 544 (898)
T TIGR02103 473 MAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTP--------EIYFYGEGWDFGEVANNRRFINATQL 544 (898)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCC--------CEEEEecCCCcccccchhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999984 69999999999999888889999999
Q ss_pred ccCCCcccccchHHHHHHcCCCCCCC----CcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhcc
Q 002079 640 NLSGTGIGSFNDRIRDAMLGGSPFGP----PLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLT 715 (971)
Q Consensus 640 ~~~gtgig~fnDrlRdavrgg~~F~~----~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~ 715 (971)
||++++||+||||+|||||||++|+. +..|||++|++.+||+. +|.....+.++++.+|+||.||+|||++|.|+
T Consensus 545 n~~~~~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~-~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~ 623 (898)
T TIGR02103 545 NLAGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAH-HGLDAASKDGALHLADLTRLGMAGNLKDFVLT 623 (898)
T ss_pred ccCCCCeEEeccchhhHhcCCCccccccccccCcceecCcccCCccc-ccccchhhhhhhhhHHHHHHhhcCcccccccc
Confidence 99999999999999999999999986 57899999999999977 56666778889999999999999999999999
Q ss_pred ccCCcccccccccccCCCCccccCCCCceeeeccccccccHHHHhcCC-------------------------CeeeEec
Q 002079 716 NSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK-------------------------GIPFFHC 770 (971)
Q Consensus 716 ~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~~-------------------------GiPfiy~ 770 (971)
+++|..++|+++ +|+|+|++|+.+|.++||||++|||+||||.++++ ||||||+
T Consensus 624 ~~~g~~~~g~~~-~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~ha 702 (898)
T TIGR02103 624 DHEGKVVTGEEL-DYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHA 702 (898)
T ss_pred cccccccccccc-ccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhc
Confidence 999999999998 89999999999999999999999999999999876 9999999
Q ss_pred cccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHH
Q 002079 771 GDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIR 850 (971)
Q Consensus 771 GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LR 850 (971)
|+|++|||++++|||+||||||++||++++||||+|||++++|+.+|+.|+++|+||+++|+++++..++++||+||+||
T Consensus 703 G~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lR 782 (898)
T TIGR02103 703 GSELLRSKSFDRDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIR 782 (898)
T ss_pred chHhhcCCCCCCCCCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCCCCCCceE
Q 002079 851 YSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQ 930 (971)
Q Consensus 851 ks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~~~~~~~~ 930 (971)
++||+||++++++|+++|.|+++|+++++|||+|+|+++.. ...+++|++++.||||||++++++++ +|.+.+.+|+
T Consensus 783 ks~p~Frl~t~~~I~~~v~F~~~g~~~~~g~i~~~i~d~~~--~~~~~~d~~~~~ivVv~Na~~~~~~~-~~~~~~~~~~ 859 (898)
T TIGR02103 783 SSSPLFRLDTAAEVMKRVDFRNTGPDQIPGLIVMSIDDGGI--QAGASLDPRYDGIVVIFNARPEEVTL-SPDFAGTGLE 859 (898)
T ss_pred hCCcccCCCCHHHHHhheEEeccCCcCCCCEEEEEEcCCcc--ccccccccccCeEEEEEcCCCccEEE-ecccCCCcEE
Confidence 99999999999999999999999999999999999998631 12368899999999999999999999 8888788999
Q ss_pred eecceeccccccccCcceeecCcEEEEcCceEEEEEEcc
Q 002079 931 LHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFVEPR 969 (971)
Q Consensus 931 l~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVfv~~~ 969 (971)
||++|..+.|.+++.+.+...+|+|||||+|++||+++|
T Consensus 860 l~~~~~~~~d~~v~~~~~~~~~~~~~vp~~s~~V~~~~~ 898 (898)
T TIGR02103 860 LHAVQQASGDESVAKSVYSAANGTFTVPAWTTAVFVLPR 898 (898)
T ss_pred EEecccccCccccccceeeccCCEEEEcCcEEEEEEecC
Confidence 999999999998887666667899999999999999986
No 3
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=4e-110 Score=1029.66 Aligned_cols=644 Identities=27% Similarity=0.451 Sum_probs=499.0
Q ss_pred EEeeccCCCCChhhhhcCCcccccceeeeCCccchHHHHHhhhhccccccccccccccccccccccCCCCCCccEEeCCe
Q 002079 139 IELQEDKGGLPANVIEKFPHIRDYKAFKVPAGSDAKLLLKCQLAVADRKCSDATGLQLPGILDELFSYDGPLGALYAEET 218 (971)
Q Consensus 139 ~~l~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~l~~q~~~~~g~~~~~t~vq~~~~lD~~y~~~~~LGa~~~~~~ 218 (971)
|+|.. ..++..++.+|++.. .+|.|.-.. + .+...+++| +||++|+|+++|||++.+++
T Consensus 269 ~~~~~--~~~~~~~~~~~~~~~--~~~~v~~~~--~------------~~~~~~~~~---~~d~~y~y~g~LGa~~~~~g 327 (1111)
T TIGR02102 269 VTIDT--DKKTVTVKGDFNLDK--SPYTVSYNE--V------------SVPTKQSWR---LKDEMYAYDGKLGAQLHEDG 327 (1111)
T ss_pred eeecC--CcceEEeeccCCccc--CCEEEEecc--c------------cchhhcchh---hhhhhhccCCCCCCEEecCC
Confidence 55554 567778888888873 345554210 0 012233444 79999999999999998665
Q ss_pred -eEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCC------CCCCceEEEEEEEecCCCccccceeec
Q 002079 219 -VSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPK------SWEGCYYVYEVSVYHPSALQIEKCYAN 290 (971)
Q Consensus 219 -v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~------~~~G~~Y~Y~v~~~~p~~g~~~~~~vt 290 (971)
++|+||||+|++|+|++|+..........++| ++.+|||++++++ +++|.+|+|+|+.. .++.+++
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~------~~~~~~~ 401 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRG------GDKVLAL 401 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECC------CceEEEe
Confidence 89999999999999999986433233457899 6788999999984 67899999999742 2467899
Q ss_pred Ccccccccc-C---------CCccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCC---CC
Q 002079 291 DPYARGLSS-D---------GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPD---FR 357 (971)
Q Consensus 291 DPYa~~ls~-n---------g~~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~---~r 357 (971)
||||++++. + +.+|.++|+.. +.|.+|+-. .+|...+++|+||||+|||+||. +++++.. .+
T Consensus 402 DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~--~~p~~~~~~--~~~~~~~~~d~vIYElHVrdFt~-d~~~~~~~~~~~ 476 (1111)
T TIGR02102 402 DPYAKSLAAWNDATSDDQIKVAKAAFVDPSS--LGPQELDFA--KIENFKKREDAIIYEAHVRDFTS-DPAIAGDLTAQF 476 (1111)
T ss_pred ChhheEEeccCcccccccCCCCceEEEcCcc--cCccccccc--cccccCCccceEEEEEechhhCc-CCCCCcccccCC
Confidence 999999986 4 25688898754 667777654 45666688999999999999995 4444443 47
Q ss_pred cccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchh
Q 002079 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (971)
Q Consensus 358 G~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (971)
|+|+||+++ |+||++||||||||||||++++++|.+......
T Consensus 477 Gtf~gl~ek-------LdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~------------------------------- 518 (1111)
T TIGR02102 477 GTFAAFVEK-------LDYLQDLGVTHIQLLPVLSYFFVNEFKNKERML------------------------------- 518 (1111)
T ss_pred cCHHHHHHh-------HHHHHHcCCCEEEEcCccccccccccccccccc-------------------------------
Confidence 999999765 899999999999999999999887643211000
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCC-chhHHHHHHHHHHHhcCCEEEEEEeecccc
Q 002079 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGS-CRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (971)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~-~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~ 516 (971)
.+. ...+.+||||||.+||+|+++||++|..+ .|++|||+||++||++||+||||||||||+
T Consensus 519 ----~~~-------------~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~ 581 (1111)
T TIGR02102 519 ----DYA-------------SSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTA 581 (1111)
T ss_pred ----ccc-------------ccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 000 01235899999999999999999998655 799999999999999999999999999997
Q ss_pred CCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHH
Q 002079 517 GSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKA 596 (971)
Q Consensus 517 ~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~ 596 (971)
.. +.|++++|+||++.+.+|...++.||++++++|+||+++|+|+++||+++|||||||||+|++++.++|+.+
T Consensus 582 ~~------~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~ 655 (1111)
T TIGR02102 582 KV------YIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIA 655 (1111)
T ss_pred cc------ccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHH
Confidence 53 457889999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCCCCcEEecccccccccccccccccccccccCCC-cccccchHHHHHHcCCCCCCCCccccccccc
Q 002079 597 KHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGT-GIGSFNDRIRDAMLGGSPFGPPLQQGFVTGL 675 (971)
Q Consensus 597 ~~al~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~gt-gig~fnDrlRdavrgg~~F~~~~~~gf~~G~ 675 (971)
+.++++++| +++||||+|++...........+.|.+|..+ +||.|||++|++|||+.++. ..+||++|.
T Consensus 656 ~~~l~~~dP--------~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~--~~~gfi~G~ 725 (1111)
T TIGR02102 656 YKEAKAINP--------NIIMIGEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNE--GQPAFITGG 725 (1111)
T ss_pred HHHHHHhCc--------CEEEEEecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhcccccc--cccccccCC
Confidence 999999984 6999999999732211122234556666543 69999999999999864443 346888873
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCccc-cCCCCceeeeccccccc
Q 002079 676 LLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAY-ALCPTETISYVSAHDNE 754 (971)
Q Consensus 676 ~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~y-a~~P~~~iNyVs~HDn~ 754 (971)
. +.... +..++. |+|..| +.+|.++||||+||||+
T Consensus 726 ~--------~~~~~-----------l~~~i~-------------------------g~~~~~~~~~P~~~VnYV~aHDn~ 761 (1111)
T TIGR02102 726 A--------RNVQG-----------IFKNIK-------------------------AQPHNFEADSPGDVVQYIAAHDNL 761 (1111)
T ss_pred c--------ccHHH-----------HHHhhc-------------------------CCccccccCCcccEEEEEecCCCC
Confidence 2 11111 111111 223334 36899999999999999
Q ss_pred cHHHHhcCC-----------------------------CeeeEeccccccccCCCC------------------------
Q 002079 755 TLFDVVSLK-----------------------------GIPFFHCGDEILRSKSLD------------------------ 781 (971)
Q Consensus 755 tL~D~l~~~-----------------------------GiPfiy~GdEigrSks~d------------------------ 781 (971)
||||+++++ ||||||+|+|++|||+++
T Consensus 762 TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~ 841 (1111)
T TIGR02102 762 TLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVD 841 (1111)
T ss_pred chHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCcccccccccccccccccccccccc
Confidence 999998752 999999999999999997
Q ss_pred ----------CCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHh
Q 002079 782 ----------RDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRY 851 (971)
Q Consensus 782 ----------~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRk 851 (971)
+|||+|+||+|++||+..++ ..+|+. +..++++||+||+|||
T Consensus 842 ~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~------------~~~~~~----------------~~~~~~y~~~LI~lRk 893 (1111)
T TIGR02102 842 GNPFRYPYFIHDSYDSSDAINRFDWEKATD------------ADAYPI----------------NNKTRDYTAGLIELRR 893 (1111)
T ss_pred cccccccccccccccCCCccceeccccccc------------ccccch----------------hHHHHHHHHHHHHHHh
Confidence 89999999999999997543 234543 2468999999999999
Q ss_pred cCcccccCchhhhccceEEecCC----CCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCCC--C
Q 002079 852 SSPLFRLRTANAIQERICFHNTG----PSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPAL--Q 925 (971)
Q Consensus 852 s~pafrlgt~~~i~~~v~f~~~g----~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~~--~ 925 (971)
+||+||++++++|.++|.|++.. ..+.+++|+|.+.+.. .+.++|+||++.++++++||.. .
T Consensus 894 ~~~~fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~------------~~~~~V~~Na~~~~~~~~lp~~~~~ 961 (1111)
T TIGR02102 894 STDAFRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATN------------GDIYAVFVNADDKARTLTLGEDYAH 961 (1111)
T ss_pred cCccccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCC------------CCeEEEEECCCCCCEEEECCCCccc
Confidence 99999999999999999998763 1224689999997642 2579999999999999999962 0
Q ss_pred CCceEe-ecceeccccccccCcceeecCcEEEEcCceEEEEEEcc
Q 002079 926 GKNLQL-HPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFVEPR 969 (971)
Q Consensus 926 ~~~~~l-~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVfv~~~ 969 (971)
...|.+ ......+.+.+.+...+....++++|||+|++||...+
T Consensus 962 ~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~s~~V~~~~~ 1006 (1111)
T TIGR02102 962 LTVGEVVVDAEQAGVTGIAEPKGVELTAEGLKLDPLTAAVVRVGG 1006 (1111)
T ss_pred ccceEEEEcccccCcccccccccccccCCeEEEcCcEEEEEEecc
Confidence 123442 22222345556554445555789999999999998763
No 4
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=2.3e-94 Score=862.19 Aligned_cols=561 Identities=38% Similarity=0.715 Sum_probs=446.9
Q ss_pred cccccCCCCCCccEEeCCeeEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEEec
Q 002079 200 LDELFSYDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYH 278 (971)
Q Consensus 200 lD~~y~~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~ 278 (971)
||+.|+|+++|||++.+++++|+||||+|++|+|++|+++.+..+...++| +..+|+|++.+++..+|.+|+|+|+..
T Consensus 2 ~~~~~~~~~~lG~~~~~~~~~F~vwaP~a~~V~l~~~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~- 80 (605)
T TIGR02104 2 FDDKFYYDGELGAVYTPEKTVFRVWAPTATEVELLLYKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCIN- 80 (605)
T ss_pred cccccCCCCCCccEEECCeeEEEEECCCCCEEEEEEEcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcC-
Confidence 899999999999999999999999999999999999987654345568899 677899999999999999999999853
Q ss_pred CCCccccceeecCccccccccCCCccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCc
Q 002079 279 PSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRG 358 (971)
Q Consensus 279 p~~g~~~~~~vtDPYa~~ls~ng~~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG 358 (971)
+ ...+++||||++++.++..|.|+|++. +++.+|... ..|...+++++||||+|||+|+.++++.. ..+|
T Consensus 81 ---~--~~~~~~DPya~~~~~~~~~s~v~d~~~--~~~~~w~~~--~~~~~~~~~~~vIYElhv~~ft~~~~~~~-~~~G 150 (605)
T TIGR02104 81 ---G--KWRETVDPYAKAVTVNGKRGAVIDLER--TNPEGWEKD--HRPRLENPEDAIIYELHIRDFSIHENSGV-KNKG 150 (605)
T ss_pred ---C--CeEEEcCCCcceeccCCCcEEEEcccc--cCccCcccc--cCCCCCChhHcEEEEEecchhccCCCCCc-CCCC
Confidence 1 235799999999999998999999864 567789875 33555578999999999999998765543 4599
Q ss_pred ccccccccc----hhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCcccc
Q 002079 359 GYLAFTLQN----SAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSF 434 (971)
Q Consensus 359 ~y~g~~e~~----s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (971)
||+|++|+. .+.+++|+||++||||||||||||++.++++...
T Consensus 151 ~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~--------------------------------- 197 (605)
T TIGR02104 151 KYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDP--------------------------------- 197 (605)
T ss_pred ceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccC---------------------------------
Confidence 999999974 2457899999999999999999999987543210
Q ss_pred chhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCC-chhHHHHHHHHHHHhcCCEEEEEEeec
Q 002079 435 ADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGS-CRTIEFRRMVQALNHIGLHVVLDVVYN 513 (971)
Q Consensus 435 ~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~-~ri~Efr~mV~alH~~Gi~VIlDvVyN 513 (971)
...+||||+|.+||+|+++||++|..+ .|++|||+||++||++||+||||||||
T Consensus 198 -------------------------~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~N 252 (605)
T TIGR02104 198 -------------------------NNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYN 252 (605)
T ss_pred -------------------------CCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcC
Confidence 124789999999999999999988644 689999999999999999999999999
Q ss_pred cccCCCCCCCCCccCCCCCcceeecCCCCccccC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHH
Q 002079 514 HLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHS-TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKST 592 (971)
Q Consensus 514 Ht~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~s-tc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~ 592 (971)
||++. ..+.+++++|+||++.+..|.+.+. .|+++++++|+||+++|+|++++|+++|||||||||+|++++.++
T Consensus 253 H~~~~----~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~ 328 (605)
T TIGR02104 253 HTYSR----EESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIET 328 (605)
T ss_pred CccCC----CCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHH
Confidence 99753 2345788889999998888877654 577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCcEEecccccccccccccccccccccccCC-CcccccchHHHHHHcCCCCCCCCccccc
Q 002079 593 MMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSG-TGIGSFNDRIRDAMLGGSPFGPPLQQGF 671 (971)
Q Consensus 593 ~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~g-tgig~fnDrlRdavrgg~~F~~~~~~gf 671 (971)
|++++++|+++. |+++||||+|+.+.... ....+.+.+..+ .+++.|||++||+|++ ..|+. ..+||
T Consensus 329 ~~~~~~~~~~~~--------p~~~ligE~w~~~~~~~--~~~~~~~~~~~~~~~~~~~n~~~rd~i~~-~~~~~-~~~~f 396 (605)
T TIGR02104 329 MNEIRKALNKID--------PNILLYGEGWDLGTPLP--PEQKATKANAYQMPGIAFFNDEFRDALKG-SVFHL-KKKGF 396 (605)
T ss_pred HHHHHHHHHhhC--------CCeEEEEccCCCCCCcc--hhhhhhhhccCCCCceEEECCcchhhhcC-Ccccc-ccCce
Confidence 999999999987 46999999999764210 000111112211 4789999999999997 45543 23577
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCccccCCCCceeeecccc
Q 002079 672 VTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAH 751 (971)
Q Consensus 672 ~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~H 751 (971)
+.|.. +.... +...+.|+. .|.+.. .+...|.++||||+||
T Consensus 397 ~~g~~--------~~~~~-----------l~~~l~~~~-------------------~~~~~~-~~~~~p~~~vnyl~~H 437 (605)
T TIGR02104 397 VSGNP--------GTEET-----------VKKGILGSI-------------------ELDAVK-PSALDPSQSINYVECH 437 (605)
T ss_pred ecCCC--------CcHHH-----------HHhheeCCh-------------------hhcccc-cccCChhheEEEEEec
Confidence 76621 11111 111222221 111111 1235789999999999
Q ss_pred ccccHHHHhcCC------------------------CeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 002079 752 DNETLFDVVSLK------------------------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGL 807 (971)
Q Consensus 752 Dn~tL~D~l~~~------------------------GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~Gl 807 (971)
||.||+|++.+. ||||||||||+||++.+++|+|+++|.+|+|+|+....
T Consensus 438 D~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~------ 511 (605)
T TIGR02104 438 DNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKAT------ 511 (605)
T ss_pred CCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCCcccccCcccccc------
Confidence 999999886531 99999999999999999999999999999999974210
Q ss_pred CCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceEEecCCCCCCCcEEEEEEE
Q 002079 808 PPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIE 887 (971)
Q Consensus 808 P~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~ 887 (971)
..+++++||+||+|||++|+|+.++..+|..++.|.... .+++++|.|.
T Consensus 512 ----------------------------~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~---~~~vla~~r~ 560 (605)
T TIGR02104 512 ----------------------------FKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAE---PSGVIAYRLK 560 (605)
T ss_pred ----------------------------chHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCC---CCcEEEEEEe
Confidence 135899999999999999999999999888888887532 3579999998
Q ss_pred cCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCCCCCCceEe
Q 002079 888 DGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQL 931 (971)
Q Consensus 888 d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~~~~~~~~l 931 (971)
+...+ ..++.++|++|.+++++++.+|.. ..|+.
T Consensus 561 ~~~~~--------~~~~~llVv~N~s~~~~~v~lp~~--~~w~~ 594 (605)
T TIGR02104 561 DHANG--------DPWKDIIVIHNANPEPVDIQLPSD--GTWNV 594 (605)
T ss_pred CCcCC--------CCcCeEEEEEeCCCCCeEEECCCC--CCEEE
Confidence 63210 123579999999999999999852 24654
No 5
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=7.3e-93 Score=849.07 Aligned_cols=559 Identities=24% Similarity=0.338 Sum_probs=420.6
Q ss_pred CCCCCccEEeCCeeEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEE-ecCCCcc
Q 002079 206 YDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ 283 (971)
Q Consensus 206 ~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~-~~p~~g~ 283 (971)
...+|||++.+++++|+||||+|++|+|++|++.+. ...++| +..+|||++.+++..+|.+|+|+|+. +.|..|.
T Consensus 8 ~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~---~~~~~m~~~~~gvW~~~v~~~~~G~~Y~yrv~g~~~p~~g~ 84 (658)
T PRK03705 8 KPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENGQ---EQRYDLPARSGDIWHGYLPGARPGLRYGYRVHGPWQPAQGH 84 (658)
T ss_pred CCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCCC---eeeEeeeeccCCEEEEEECCCCCCCEEEEEEccccCcccCc
Confidence 456899999999999999999999999999986432 246788 66789999999999999999999984 4565553
Q ss_pred c--cceeecCccccccccCC----------------------CccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEE
Q 002079 284 I--EKCYANDPYARGLSSDG----------------------RRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYE 339 (971)
Q Consensus 284 ~--~~~~vtDPYa~~ls~ng----------------------~~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYE 339 (971)
. ...+++||||++++.+. ..+.|+| .+++|... ..|. .+++++||||
T Consensus 85 ~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d------~~~~W~~~--~~p~-~~~~~~vIYE 155 (658)
T PRK03705 85 RFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD------DHYDWEDD--APPR-TPWGSTVIYE 155 (658)
T ss_pred ccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec------CCCCCCCC--CCCC-CCccccEEEE
Confidence 2 34679999999997531 1233333 35678764 4443 4789999999
Q ss_pred EEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCC
Q 002079 340 LHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNT 419 (971)
Q Consensus 340 lHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~ 419 (971)
+|||+||..+++++..++|||+|++++ .+|+||++||||||||||||++.+.++...
T Consensus 156 ~hvr~ft~~~~~~~~~~~Gtf~g~~~~-----~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~------------------ 212 (658)
T PRK03705 156 AHVRGLTYLHPEIPVEIRGTYAALGHP-----VMIAYLKQLGITALELLPVAQFASEPRLQR------------------ 212 (658)
T ss_pred EehhhhcccCCCCCccccccHHHhhcc-----cchHHHHHcCCCEEEecCcccCCCcccccc------------------
Confidence 999999987777788899999999874 248888888999999999999975321100
Q ss_pred CcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHH
Q 002079 420 FSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQAL 499 (971)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~al 499 (971)
....+||||+|.+||+|+++||++++ .|++|||+||++|
T Consensus 213 ---------------------------------------~g~~~ywGYd~~~yfa~d~~ygt~~~--~~~~efk~LV~~~ 251 (658)
T PRK03705 213 ---------------------------------------MGLSNYWGYNPLAMFALDPAYASGPE--TALDEFRDAVKAL 251 (658)
T ss_pred ---------------------------------------cccccccCcccccccccccccCCCCc--chHHHHHHHHHHH
Confidence 01136899999999999999999875 6899999999999
Q ss_pred HhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCC-CCCCCCCCCHHHHHHHHHHHHHHHHhCCcc
Q 002079 500 NHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHST-CMNNTASEHYMVERLIIDDLLCWAVNYKVD 578 (971)
Q Consensus 500 H~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~st-c~~d~a~e~~mv~k~i~Dsl~~W~~ey~ID 578 (971)
|++||+||||||||||+..+.......+..+.+.||++.+.+|.+.+++ |.+++|++|+||+++|+|+++||+++||||
T Consensus 252 H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVD 331 (658)
T PRK03705 252 HKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVD 331 (658)
T ss_pred HHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999864322112224455555665677778877755 667889999999999999999999999999
Q ss_pred EEEEecCCCCcHH--HHHHHHHHHHhhcccccCCCCCCcEEecccccccccccccccccccccccCCCcccccchHHHHH
Q 002079 579 GFRFDLMGHIMKS--TMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDA 656 (971)
Q Consensus 579 GFRfDlm~~~~~~--~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~gtgig~fnDrlRda 656 (971)
|||||+|+++.+. ++.. ...++++.. +++ .++++||||+|+.+.. +.|......+|+.|||+|||+
T Consensus 332 GFRfD~a~~l~~~~~~~~~-~~~~~ai~~--d~v-l~~~~ligE~Wd~~~~--------~~~~g~~~~~~~~~Nd~fRd~ 399 (658)
T PRK03705 332 GFRFDLATVLGRTPEFRQD-APLFTAIQN--DPV-LSQVKLIAEPWDIGPG--------GYQVGNFPPPFAEWNDHFRDA 399 (658)
T ss_pred EEEEEcHhhhCcCcccchh-hHHHHHHhh--Ccc-ccceEEEEecccCCCC--------hhhhcCCCcceEEEchHHHHH
Confidence 9999999999743 3322 222344432 233 3689999999997641 223333345899999999999
Q ss_pred HcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCcc
Q 002079 657 MLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVA 736 (971)
Q Consensus 657 vrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ 736 (971)
||+ |..+ ..+...++..+ +.|+. . .|..
T Consensus 400 ir~-----------f~~~--------~~~~~~~~~~~-----------l~gs~-----------------~-~~~~---- 427 (658)
T PRK03705 400 ARR-----------FWLH--------GDLPLGEFAGR-----------FAASS-----------------D-VFKR---- 427 (658)
T ss_pred HHH-----------HHcc--------CCCcHHHHHHH-----------Hhcch-----------------h-hccc----
Confidence 997 3222 11222222211 22222 1 1211
Q ss_pred ccCCCCceeeeccccccccHHHHhcCC-----------------------------------------------------
Q 002079 737 YALCPTETISYVSAHDNETLFDVVSLK----------------------------------------------------- 763 (971)
Q Consensus 737 ya~~P~~~iNyVs~HDn~tL~D~l~~~----------------------------------------------------- 763 (971)
....|..+||||++|||+||+|+++|.
T Consensus 428 ~~~~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sq 507 (658)
T PRK03705 428 NGRLPSASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQ 507 (658)
T ss_pred cCCCCCeEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 125789999999999999999977431
Q ss_pred CeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHH
Q 002079 764 GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENF 843 (971)
Q Consensus 764 GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~ 843 (971)
||||||||||++|||.|++|+||++|.+|+|||+... .++++++
T Consensus 508 G~P~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~~~------------------------------------~~l~~f~ 551 (658)
T PRK03705 508 GTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQAD------------------------------------RGLTAFT 551 (658)
T ss_pred CchHHHhhHHhccCCCCCCCCccCCCCccccccchhh------------------------------------hHHHHHH
Confidence 9999999999999999999999999999999997410 3689999
Q ss_pred HHHHHHHhcCcccccCch-hhhccceEEecCC------CCCCC--cEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCC
Q 002079 844 SDVLRIRYSSPLFRLRTA-NAIQERICFHNTG------PSAVP--GVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSP 914 (971)
Q Consensus 844 k~Li~LRks~pafrlgt~-~~i~~~v~f~~~g------~~~~~--gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~ 914 (971)
|+||+|||+||+||..++ +.+.+.+.|.+.. ++|.. ..++|.+. +.++|+||++.
T Consensus 552 k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~~~----------------~~~~v~~N~~~ 615 (658)
T PRK03705 552 AALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPKQLQILLS----------------DRWLIAINATL 615 (658)
T ss_pred HHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcceEEEEEEC----------------CCEEEEECCCC
Confidence 999999999999999998 7788889997542 22323 34556553 24999999999
Q ss_pred CcEEEEcCCCCCCceEeecceeccccccccCcceeecCcEEEEcCceEEEEEE
Q 002079 915 TEVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFVE 967 (971)
Q Consensus 915 ~~~~~~lp~~~~~~~~l~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVfv~ 967 (971)
++++++||. + .|.+...+....+ ......+.||++|+.||..
T Consensus 616 ~~~~~~lp~--~-~w~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 657 (658)
T PRK03705 616 EVTEIVLPE--G-EWHAIPPFAGEDN--------PVITAVWHGPAHGVCVFQR 657 (658)
T ss_pred CCeEEECCC--c-ceEEEEccCCCcc--------cccCceeeecCcEEEEEec
Confidence 999999996 2 5776532211111 1123468899999999975
No 6
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-93 Score=847.73 Aligned_cols=578 Identities=29% Similarity=0.482 Sum_probs=440.6
Q ss_pred CCCCCccEE---eCCeeEEEEEcCCCCeEEEEEecCCCCCCCceEEecc-cCCCEEEEEeCCCCCCceEEEEEEE-ecCC
Q 002079 206 YDGPLGALY---AEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK-ENDGVWSIKGPKSWEGCYYVYEVSV-YHPS 280 (971)
Q Consensus 206 ~~~~LGa~~---~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M~-~~~GvW~v~~~~~~~G~~Y~Y~v~~-~~p~ 280 (971)
...+||+++ .+.++.|++|+..|++|+|++|+.....++.+.++|+ +.+.+|++.+|+...|+.|.||+.. ++|.
T Consensus 16 ~~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g~~y~yr~~g~~~~~ 95 (697)
T COG1523 16 KPYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPGQVYGYRVHGPYDPE 95 (697)
T ss_pred CcccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCceeeEEEEecCCCcCCc
Confidence 456899998 4489999999999999999999876443333347884 4566999999999999999999986 6676
Q ss_pred Cccc--cceeecCccccccccCCCcc-----------EEEeCCC------C-----CCCC-CcccccccCCCCCCCCCCc
Q 002079 281 ALQI--EKCYANDPYARGLSSDGRRT-----------LLVNLDS------D-----TLKP-EGWDKLVYEKPDILSFSDI 335 (971)
Q Consensus 281 ~g~~--~~~~vtDPYa~~ls~ng~~s-----------~vvdl~~------~-----~~~p-~~W~~~~~~~P~~~~~~d~ 335 (971)
.++. ......||||+.+..+-..+ ++.++.. . ...+ +.|+.. +.| ..+++++
T Consensus 96 ~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~~~w~~~--~~~-~~p~~~~ 172 (697)
T COG1523 96 EGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPLFDWEND--KPP-RIPWEDT 172 (697)
T ss_pred cCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccccccccC--CCC-CCCccce
Confidence 6542 34678999999987543221 0111100 0 1122 578874 444 4469999
Q ss_pred eEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCcccc
Q 002079 336 SIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFF 415 (971)
Q Consensus 336 vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~ 415 (971)
||||+||||||..++++++..||||+||+++.. |+|||+||||||+||||+++...++..
T Consensus 173 vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~-----i~yLk~LGvtaVeLLPV~~~~~~~~l~--------------- 232 (697)
T COG1523 173 VIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVI-----IDYLKDLGVTAVELLPVFDFYDEPHLD--------------- 232 (697)
T ss_pred EEEEeeecccccCCCCCchhhccceehhccccH-----HHHHHHhCCceEEEecceEEecccccc---------------
Confidence 999999999999889999999999999999732 666777799999999999998754432
Q ss_pred ccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHH
Q 002079 416 GQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRM 495 (971)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~m 495 (971)
.....+||||||.+||||+++|+++|+...||+|||+|
T Consensus 233 ------------------------------------------~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~m 270 (697)
T COG1523 233 ------------------------------------------KSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDM 270 (697)
T ss_pred ------------------------------------------ccccccccCCCcccccCCCccccCCCCcchHHHHHHHH
Confidence 01236999999999999999999999955899999999
Q ss_pred HHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCC-CCCCCCHHHHHHHHHHHHHHHHh
Q 002079 496 VQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMN-NTASEHYMVERLIIDDLLCWAVN 574 (971)
Q Consensus 496 V~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~-d~a~e~~mv~k~i~Dsl~~W~~e 574 (971)
|++||++||+||||||||||++++...+...|.+++|.||+|.+++|.+.|+|||. .+|++||||+|+|+|||+||++|
T Consensus 271 V~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e 350 (697)
T COG1523 271 VKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEE 350 (697)
T ss_pred HHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987555567789999999999999999999988665 56999999999999999999999
Q ss_pred CCccEEEEecCCCCcHHHH-HHHHHHHHhhcccccCCCCCCcEEecccccccccccccccccccccccCC--Ccccccch
Q 002079 575 YKVDGFRFDLMGHIMKSTM-MKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSG--TGIGSFND 651 (971)
Q Consensus 575 y~IDGFRfDlm~~~~~~~~-~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~g--tgig~fnD 651 (971)
|||||||||+|+.+.+++| ..+...+-.+-+..+.+ ..+.+++|.||.|+ +.+|...+. .+++.||+
T Consensus 351 ~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l--~~~kliAepwD~g~--------~gyqvG~Fpd~~~~aewng 420 (697)
T COG1523 351 YHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVL--SGVKLIAEPWDIGP--------GGYQVGNFPDSPRWAEWNG 420 (697)
T ss_pred hCCCceeecchhhccccccccccCcchhhhccCCccc--cCceeeecchhhcC--------CCcccccCCCccchhhhCC
Confidence 9999999999999999998 44444443333322222 35679999999886 233444333 56777888
Q ss_pred HHHHHHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccC
Q 002079 652 RIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYD 731 (971)
Q Consensus 652 rlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~ 731 (971)
++||.+|+ |++| +.+....+..+| .||.. .|+
T Consensus 421 ~~rD~vr~-----------F~~G--------~~~~~~~~a~rl----------------------------~gS~d-~~~ 452 (697)
T COG1523 421 RFRDDVRR-----------FWRG--------DAGLVGEFAKRL----------------------------AGSSD-LYK 452 (697)
T ss_pred cccccccc-----------eeeC--------CCccHHHHHHHh----------------------------hcCcc-hhh
Confidence 88887776 7776 223333333222 23321 121
Q ss_pred CCCccccCCCCceeeeccccccccHHHHhcCC------------------------------------------------
Q 002079 732 GTPVAYALCPTETISYVSAHDNETLFDVVSLK------------------------------------------------ 763 (971)
Q Consensus 732 g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~~------------------------------------------------ 763 (971)
..+..|.++||||++|||+||||+++|+
T Consensus 453 ----~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~t 528 (697)
T COG1523 453 ----RNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLAT 528 (697)
T ss_pred ----ccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHH
Confidence 1236899999999999999999999875
Q ss_pred -----CeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHH
Q 002079 764 -----GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILA 838 (971)
Q Consensus 764 -----GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~ 838 (971)
|+||+.+|||++||+.+++|+||++|++|++||+...| .+
T Consensus 529 lllsqG~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~-----------------------------------~~ 573 (697)
T COG1523 529 LLLSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEAN-----------------------------------ND 573 (697)
T ss_pred HHhhcCCcccccccccccccccccccccCCcccceeccCcccc-----------------------------------HH
Confidence 99999999999999999999999999999999982010 36
Q ss_pred HHHHHHHHHHHHhcCcccccCchhhhc---cceEEecCC------CCCC---CcEEEEEEEcCCCCCCCccccCCCCCEE
Q 002079 839 ALENFSDVLRIRYSSPLFRLRTANAIQ---ERICFHNTG------PSAV---PGVIVMSIEDGHEGVPGLSQLDSNYSYI 906 (971)
Q Consensus 839 ~~~~~k~Li~LRks~pafrlgt~~~i~---~~v~f~~~g------~~~~---~gviv~~~~d~~~~~~~~~~~d~~~~~i 906 (971)
++++.+.||+|||++|+||..++.+++ ..+.|.+.. .+|. ...++|.+++. .+.+
T Consensus 574 l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~-------------~~~~ 640 (697)
T COG1523 574 LVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGD-------------KERL 640 (697)
T ss_pred HHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhcccCCCCceEEEEecCC-------------CccE
Confidence 899999999999999999998888875 456665421 1222 23566666542 3679
Q ss_pred EEEEeCCCCcEEEEcCCCCCCceEeecceeccccccccCcceeecCcEEEEcCceEEEEEEc
Q 002079 907 VVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFVEP 968 (971)
Q Consensus 907 vVv~N~s~~~~~~~lp~~~~~~~~l~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVfv~~ 968 (971)
+|++|+..+.+.+.+|... ..|.+ +...+.+.. .. ..+++++++|+.||...
T Consensus 641 lv~~N~~~~~~~~~lp~~~-~~~~~--~~~~~~~~~-----~~--~~~~~~~~~s~~vl~~~ 692 (697)
T COG1523 641 LVLINATAEPVEFELPEDE-GKWAG--LVDTSTPPG-----FD--IREVSLPGRSVLVLTRR 692 (697)
T ss_pred EEEecCCccccceeccccc-Cccee--eecccCCCC-----cc--cceeecCCcEEEEEeec
Confidence 9999999999999999754 33432 111111111 00 11689999999999853
No 7
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.3e-91 Score=843.50 Aligned_cols=576 Identities=24% Similarity=0.382 Sum_probs=433.0
Q ss_pred CCCCCccEEeCCeeEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEE-ecCCCcc
Q 002079 206 YDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ 283 (971)
Q Consensus 206 ~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~-~~p~~g~ 283 (971)
...+|||++.+++++|+||||+|++|+|+||+.... .+...++| +..+|||++++++..+|.+|+|+|+. ++|..|.
T Consensus 3 ~~~~LGa~~~~~g~~F~vwap~A~~V~L~l~~~~~~-~~~~~~~m~~~~~gvW~~~v~~~~~g~~Y~yrv~g~~~~~~g~ 81 (688)
T TIGR02100 3 MPFPLGATWDGQGVNFALFSANAEKVELCLFDAQGE-KEEARLPLPERTDDIWHGYLPGAQPGQLYGYRVHGPYDPENGH 81 (688)
T ss_pred CCcCCCeEEeCCcEEEEEECCCCCEEEEEEEcCCCC-ceeeEEecccCCCCEEEEEECCCCCCCEEEEEEeeeeCCCCCc
Confidence 356899999999999999999999999999976432 34567899 67789999999999999999999984 6776664
Q ss_pred c--cceeecCccccccccCCC-----------------------------ccEEEeCCCCCCCCCcccccccCCCCCCCC
Q 002079 284 I--EKCYANDPYARGLSSDGR-----------------------------RTLLVNLDSDTLKPEGWDKLVYEKPDILSF 332 (971)
Q Consensus 284 ~--~~~~vtDPYa~~ls~ng~-----------------------------~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~ 332 (971)
. ...+++||||++++.+.. +|.|+|. ++.|... ...|. .++
T Consensus 82 ~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~------~~~w~~~-~~~p~-~~~ 153 (688)
T TIGR02100 82 RFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP------DFDWGGD-EQRPR-TPW 153 (688)
T ss_pred ccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC------CCCCCCc-ccCCC-CCc
Confidence 2 456899999999986521 4566654 2568653 12343 378
Q ss_pred CCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCc
Q 002079 333 SDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGL 412 (971)
Q Consensus 333 ~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~ 412 (971)
+++||||+|||+|+..+++++..++|||+|++++ .+|+||++||||||||||||++.+.....
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~-----~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~------------ 216 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHP-----AMIDYLKKLGVTAVELLPVHAFIDDRHLL------------ 216 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhcc-----chhHHHHHcCCCEEEECCcccCCcccccc------------
Confidence 9999999999999988777888899999999985 35888888899999999999986421100
Q ss_pred cccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHH
Q 002079 413 VFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEF 492 (971)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Ef 492 (971)
.....+||||+|.+||+|+++||++. +++||
T Consensus 217 ---------------------------------------------~~~~~~ywGYd~~~y~a~d~~y~~~g----~~~ef 247 (688)
T TIGR02100 217 ---------------------------------------------EKGLRNYWGYNTLGFFAPEPRYLASG----QVAEF 247 (688)
T ss_pred ---------------------------------------------ccCCCCccCcCcccccccChhhcCCC----CHHHH
Confidence 00113689999999999999999852 58999
Q ss_pred HHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCC--CccccC-CCCCCCCCCCHHHHHHHHHHHH
Q 002079 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSD--GFIEHS-TCMNNTASEHYMVERLIIDDLL 569 (971)
Q Consensus 493 r~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~--G~~~~s-tc~~d~a~e~~mv~k~i~Dsl~ 569 (971)
|+||++||++||+||||||||||+..+.......+..+.+.+|++.+.+ |.+.+. .|++++|++|+||+++|+|+++
T Consensus 248 k~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~ 327 (688)
T TIGR02100 248 KTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLR 327 (688)
T ss_pred HHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998655433344555556666666654 666565 4677889999999999999999
Q ss_pred HHHHhCCccEEEEecCCCCcHH-----HHHHHHHHHHhhcccccCCCCCCcEEecccccccccccccccccccccccCCC
Q 002079 570 CWAVNYKVDGFRFDLMGHIMKS-----TMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGT 644 (971)
Q Consensus 570 ~W~~ey~IDGFRfDlm~~~~~~-----~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~gt 644 (971)
+|+++|||||||||+|+++++. ++..+.+++++- ++ .++++||||+|+.+.. ..|......
T Consensus 328 ~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d-----~~-~~~~~ligE~W~~~~~--------~~~~~~~~~ 393 (688)
T TIGR02100 328 YWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQD-----PV-LAQVKLIAEPWDIGPG--------GYQVGNFPP 393 (688)
T ss_pred HHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhC-----cc-cCCeEEEEeeecCCCC--------cccccCCCC
Confidence 9999999999999999998763 345566666541 12 3679999999986531 223222345
Q ss_pred cccccchHHHHHHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCccccc
Q 002079 645 GIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKG 724 (971)
Q Consensus 645 gig~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~G 724 (971)
+|+.|||+|||+||+ |+.| ..+....+..+ +.|...
T Consensus 394 ~~~~~Nd~frd~ir~-----------f~~g--------~~~~~~~~~~~-----------l~gs~~-------------- 429 (688)
T TIGR02100 394 GWAEWNDRYRDDMRR-----------FWRG--------DAGMIGELANR-----------LTGSSD-------------- 429 (688)
T ss_pred ceEEecHHHHHHHHH-----------HHcC--------CCCcHHHHHHH-----------HhCCHh--------------
Confidence 789999999999996 6655 22333333222 223221
Q ss_pred ccccccCCCCccccCCCCceeeeccccccccHHHHhcC---------------------------------------C--
Q 002079 725 SEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSL---------------------------------------K-- 763 (971)
Q Consensus 725 s~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~---------------------------------------~-- 763 (971)
.|. .....|..+||||++||++||+|+++| +
T Consensus 430 ----~~~----~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~ 501 (688)
T TIGR02100 430 ----LFE----HNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQ 501 (688)
T ss_pred ----hcc----ccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHH
Confidence 121 112468899999999999999998654 0
Q ss_pred ------------CeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCc
Q 002079 764 ------------GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKP 831 (971)
Q Consensus 764 ------------GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~ 831 (971)
||||||||||+||||.|++|+||+++.+|+|||....
T Consensus 502 ~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~------------------------------- 550 (688)
T TIGR02100 502 QRNLLATLLLSQGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDE------------------------------- 550 (688)
T ss_pred HHHHHHHHHHcCCCceeeecHhhccCCCCCCCCccCCCcccccCccccc-------------------------------
Confidence 9999999999999999999999999999999997421
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCcccccCchhhh------ccceEEecC------CCCCC---CcEEEEEEEcCCCCCCCc
Q 002079 832 QKSHILAALENFSDVLRIRYSSPLFRLRTANAI------QERICFHNT------GPSAV---PGVIVMSIEDGHEGVPGL 896 (971)
Q Consensus 832 ~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i------~~~v~f~~~------g~~~~---~gviv~~~~d~~~~~~~~ 896 (971)
...++++++|+||+|||+||+||.+++..+ ...|+|.+. .++|. ..+|+|.+.+...+
T Consensus 551 ---~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~---- 623 (688)
T TIGR02100 551 ---GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPG---- 623 (688)
T ss_pred ---ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccC----
Confidence 114799999999999999999999988753 567899642 23453 37999999863210
Q ss_pred cccCCCCCEEEEEEeCCCCcEEEEcCCCCCCceEeecceec-cccccccCcceeecCcEEEEcCceEEEEEE
Q 002079 897 SQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVK-SVDEIVKNSSYEANSGCFVIPPRTTSVFVE 967 (971)
Q Consensus 897 ~~~d~~~~~ivVv~N~s~~~~~~~lp~~~~~~~~l~~~~~~-~~d~~v~~~~~~~~~g~~tVpa~S~aVfv~ 967 (971)
+-...++.++|+||++.+.+++.||... ..|.+.-.... +.+.+ .....+.+.||++|++||+.
T Consensus 624 -~~~~~~~~~~v~~N~~~~~~~~~lP~~~-~~w~~~~dt~~~~~~~~-----~~~~~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 624 -GDPGADDSLLLLLNAGPEPVPFKLPGGG-GRWELVLDTADEEAPGI-----HLDAGQEAELPARSVLLLRR 688 (688)
T ss_pred -CCCCCCCeEEEEECCCCCCeEEECCCCC-CcEEEEecCCCCCCccc-----cccCCCEEEEcCCEEEEEeC
Confidence 0001235699999999999999999743 46776432211 11111 01224589999999999973
No 8
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.5e-78 Score=764.94 Aligned_cols=541 Identities=23% Similarity=0.298 Sum_probs=402.5
Q ss_pred CCCCCCccEEeCCeeEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEE-ecCCCc
Q 002079 205 SYDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSAL 282 (971)
Q Consensus 205 ~~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~-~~p~~g 282 (971)
.+..||||++.+++|+|+||||+|++|+|++|+.+.. ....+++| .+.+|||++.+++...|++|.|+|.. +.|..+
T Consensus 11 g~~~plGA~~~~~gv~F~v~ap~A~~V~L~lf~~~~~-~~~~~~~l~~~~g~vW~~~i~~~~~g~~Ygyrv~g~~~p~~g 89 (1221)
T PRK14510 11 GFREPLGAVPDGGGVNLALFSGAAERVEFCLFDLWGV-REEARIKLPGRTGDVWHGFIVGVGPGARYGNRQEGPGGPGEG 89 (1221)
T ss_pred CCCCCCceEEECCeEEEEEECCCCCEEEEEEEECCCC-CeeEEEECCCCcCCEEEEEEccCCCCcEEEEEeccCCCcccc
Confidence 3567999999999999999999999999999987543 23356888 67889999999999999999999974 344433
Q ss_pred c--ccceeecCccccccccCCCc------------------cEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEc
Q 002079 283 Q--IEKCYANDPYARGLSSDGRR------------------TLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHV 342 (971)
Q Consensus 283 ~--~~~~~vtDPYa~~ls~ng~~------------------s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHV 342 (971)
. -....++||||+.++..... +.++++......+++|... ..|. .++++.+|||+||
T Consensus 90 ~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~--~~~~-~~~~d~vIYE~hv 166 (1221)
T PRK14510 90 HRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPR--SPLH-GDWDDSPLYEMNV 166 (1221)
T ss_pred cccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCC--CCCC-CCcccCeEEEEcc
Confidence 2 12467899999999763211 1122221111225788764 3343 4789999999999
Q ss_pred ccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcc
Q 002079 343 RDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSS 422 (971)
Q Consensus 343 rdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~ 422 (971)
|+|+..++..+...+|+|+++.++ ..|+||++||||||||||||++.+.....
T Consensus 167 r~ft~~~~~~gg~~~Gt~~~l~~~-----~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~---------------------- 219 (1221)
T PRK14510 167 RGFTLRHDFFPGNLRGTFAKLAAP-----EAISYLKKLGVSIVELNPIFASVDEHHLP---------------------- 219 (1221)
T ss_pred chhhccCCCCCcccCcHHhhcCCc-----hhHHHHHHcCCCEEEeCCccccCcccccc----------------------
Confidence 999987777777899999999864 24677788899999999999876411000
Q ss_pred cceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhc
Q 002079 423 WWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHI 502 (971)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~ 502 (971)
.....+||||+|.+||+|+++||+. +++|||+||++||++
T Consensus 220 -----------------------------------~~g~~~yWGY~~~~yfa~dp~yg~~-----~~~efk~lV~~~H~~ 259 (1221)
T PRK14510 220 -----------------------------------QLGLSNYWGYNTVAFLAPDPRLAPG-----GEEEFAQAIKEAQSA 259 (1221)
T ss_pred -----------------------------------cccCcCcCCCCCCCCCCcChhhccC-----cHHHHHHHHHHHHHC
Confidence 0011378999999999999999962 378999999999999
Q ss_pred CCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCC--CCccccCCCC-CCCCCCCHHHHHHHHHHHHHHHHhCCccE
Q 002079 503 GLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNS--DGFIEHSTCM-NNTASEHYMVERLIIDDLLCWAVNYKVDG 579 (971)
Q Consensus 503 Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~--~G~~~~stc~-~d~a~e~~mv~k~i~Dsl~~W~~ey~IDG 579 (971)
||+||||||||||+..+.+.+.-.+..+.+.+|++.+. .+.+.+.++| +.+|++|++|+++|+|+++||++ |||||
T Consensus 260 GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDG 338 (1221)
T PRK14510 260 GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDG 338 (1221)
T ss_pred CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCE
Confidence 99999999999999876544322233344444444442 3566666555 45699999999999999999999 99999
Q ss_pred EEEecCCCC---cHHHHHHHHHHHHhhcccccCCCCCCcEEecccccccccccccccccccccccCCCcccccchHHHHH
Q 002079 580 FRFDLMGHI---MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDA 656 (971)
Q Consensus 580 FRfDlm~~~---~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~gtgig~fnDrlRda 656 (971)
||||+|+++ +..+|..++..|+++.++. + .+++++|||+|+.+.. ..|...+...++.|||+|||+
T Consensus 339 fRfDla~~l~r~~~~f~~~~~~~l~ai~~d~--~-l~~~~ligE~Wd~~~~--------~~~~g~f~~~~~~~N~~frd~ 407 (1221)
T PRK14510 339 FRLDLADELAREPDGFIDEFRQFLKAMDQDP--V-LRRLKMIAEVWDDGLG--------GYQYGKFPQYWGEWNDPLRDI 407 (1221)
T ss_pred EEEechhhhccCccchHHHHHHHHHHhCCCc--C-cccCcEEEecccCCCC--------ccccCCCCcceeeeccHHHHH
Confidence 999999999 8999999999999998751 2 1456789999997642 123322334588999999999
Q ss_pred HcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCcc
Q 002079 657 MLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVA 736 (971)
Q Consensus 657 vrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ 736 (971)
||+ |+.| ..+....+..++ .|+.. .|..
T Consensus 408 vr~-----------f~~g--------~~~~~~~~a~~l----------------------------~gs~d-~~~~---- 435 (1221)
T PRK14510 408 MRR-----------FWLG--------DIGMAGELATRL----------------------------AGSAD-IFPH---- 435 (1221)
T ss_pred HHH-----------HhcC--------CCchHHHHHHHH----------------------------hCcHh-hcCc----
Confidence 997 5544 112222222222 12211 2211
Q ss_pred ccCCCCceeeeccccccccHHHHhcCC-----------------------------------------------------
Q 002079 737 YALCPTETISYVSAHDNETLFDVVSLK----------------------------------------------------- 763 (971)
Q Consensus 737 ya~~P~~~iNyVs~HDn~tL~D~l~~~----------------------------------------------------- 763 (971)
-...|..+||||+|||++||+|+++|+
T Consensus 436 ~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~ 515 (1221)
T PRK14510 436 RRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFP 515 (1221)
T ss_pred cCCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 014678999999999999999988730
Q ss_pred CeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHH
Q 002079 764 GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENF 843 (971)
Q Consensus 764 GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~ 843 (971)
||||||||||+||||.|+.|+||+++.+++|+|...+ .+++++|
T Consensus 516 GiP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~------------------------------------~~l~~f~ 559 (1221)
T PRK14510 516 GVPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWGNED------------------------------------EELLSFF 559 (1221)
T ss_pred CCcEEecchhcccccCCCCCCCCCCCccccCCccccc------------------------------------HHHHHHH
Confidence 9999999999999999999999999999999996411 3689999
Q ss_pred HHHHHHHhcCcccccCchhhhc-------cceEEecC-C-----CCCC---CcEEEEEEEcCCCCCCCccccCCCCCEEE
Q 002079 844 SDVLRIRYSSPLFRLRTANAIQ-------ERICFHNT-G-----PSAV---PGVIVMSIEDGHEGVPGLSQLDSNYSYIV 907 (971)
Q Consensus 844 k~Li~LRks~pafrlgt~~~i~-------~~v~f~~~-g-----~~~~---~gviv~~~~d~~~~~~~~~~~d~~~~~iv 907 (971)
|+||+|||+||+||.|++..+. ..|.|+.. | ++|. ...++|.++...+. . ...+.++
T Consensus 560 k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~----~---~~~~~~~ 632 (1221)
T PRK14510 560 RRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGEQNQDRFWDKRSTEALVAVLNRPAGE----R---QVDDRFA 632 (1221)
T ss_pred HHHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCCcCChhhcCCCCCCEEEEEEecCCCC----C---CCCCeEE
Confidence 9999999999999999987653 35777541 1 2332 35677777653211 0 1136799
Q ss_pred EEEeCCCCcEEEEcCC
Q 002079 908 VIFNSSPTEVSFVSPA 923 (971)
Q Consensus 908 Vv~N~s~~~~~~~lp~ 923 (971)
|+||++.++++++||.
T Consensus 633 v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 633 VLLNSHHEELTLHLPE 648 (1221)
T ss_pred EEECCCCCCeEEECCh
Confidence 9999999999999995
No 9
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=2e-72 Score=664.26 Aligned_cols=492 Identities=25% Similarity=0.397 Sum_probs=343.3
Q ss_pred eEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEEecCCCccccceeecCcccccc
Q 002079 219 VSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGL 297 (971)
Q Consensus 219 v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~~~~vtDPYa~~l 297 (971)
|+|+||||+|++|+|+++. ..++| +..+|+|++++++...|.+|+|+|+. ...++||||+++
T Consensus 1 v~FrlwAP~A~~V~L~l~~--------~~~~m~k~~~GvW~~~v~~~~~G~~Y~y~v~g---------~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG--------ALHAMQRLGDGWFEITVPPVGPGDRYGYVLDD---------GTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeCC--------CEEeCeECCCCEEEEEECCCCCCCEEEEEEee---------eEEecCcccccc
Confidence 6899999999999999832 25789 67789999999999999999999963 247899999997
Q ss_pred cc--CCCccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHH
Q 002079 298 SS--DGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLK 375 (971)
Q Consensus 298 s~--ng~~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~ 375 (971)
.. ++ .|.|+|++.+.|++..|... +++++||||+|||+|+. .|+|.|++++ |+
T Consensus 64 ~~~~~~-~S~V~d~~~~~w~~~~~~~~--------~~~~~viYE~hv~~f~~---------~G~~~gi~~~-------l~ 118 (542)
T TIGR02402 64 PDGVHG-PSQVVDPDRYAWQDTGWRGR--------PLEEAVIYELHVGTFTP---------EGTFDAAIEK-------LP 118 (542)
T ss_pred ccCCCC-CeEEecCcccCCCCccccCC--------CccccEEEEEEhhhcCC---------CCCHHHHHHh-------hH
Confidence 43 33 58999988778888888531 46999999999999985 4999999765 88
Q ss_pred HHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHH
Q 002079 376 KLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQIT 455 (971)
Q Consensus 376 ~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~ 455 (971)
||++|||||||||||+++..
T Consensus 119 yl~~LGv~~i~L~Pi~~~~~------------------------------------------------------------ 138 (542)
T TIGR02402 119 YLADLGITAIELMPVAQFPG------------------------------------------------------------ 138 (542)
T ss_pred HHHHcCCCEEEeCccccCCC------------------------------------------------------------
Confidence 99999999999999998753
Q ss_pred hhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcce
Q 002079 456 AIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYY 535 (971)
Q Consensus 456 ~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY 535 (971)
.+||||++.+||+|+++||+ ++|||+||++||++||+||||||||||+..+. .++...| ||
T Consensus 139 ------~~~~GY~~~~~~~~~~~~G~-------~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~-----~~~~~~~-y~ 199 (542)
T TIGR02402 139 ------TRGWGYDGVLPYAPHNAYGG-------PDDLKALVDAAHGLGLGVILDVVYNHFGPEGN-----YLPRYAP-YF 199 (542)
T ss_pred ------CCCCCCCccCccccccccCC-------HHHHHHHHHHHHHCCCEEEEEEccCCCCCccc-----cccccCc-cc
Confidence 26999999999999999999 46999999999999999999999999976543 3456667 77
Q ss_pred eecCCCCccccCCCCCCCCCCCH---HHHHHHHHHHHHHHHhCCccEEEEecCCCCcH----HHHHHHHHHHHhhccccc
Q 002079 536 LRRNSDGFIEHSTCMNNTASEHY---MVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK----STMMKAKHALHSLTKEIH 608 (971)
Q Consensus 536 ~r~~~~G~~~~stc~~d~a~e~~---mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~----~~~~~~~~al~~i~p~~~ 608 (971)
++.. .+.|++++|++|+ ||+++|+|++++|+++|||||||||++.+++. .+|.+++++|+++.|+.
T Consensus 200 ~~~~------~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~- 272 (542)
T TIGR02402 200 TDRY------STPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAEL- 272 (542)
T ss_pred cCCC------CCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCC-
Confidence 4321 2456778899999 99999999999999999999999999988854 48999999999998631
Q ss_pred CCCCCCcEEecccccccccccccccccccccccCCC-cccccchHHHHHHcCCCCCCCCcccccccccccCCCCCCCCCh
Q 002079 609 GVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGT-GIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTK 687 (971)
Q Consensus 609 ~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~gt-gig~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~ 687 (971)
+.++|+||.|....... ..... .+. -.+.||+.+|+++++- +. ...+||..+.. . +.
T Consensus 273 ----~~~~li~E~~~~~~~~~-----~~~~~--~~~~~d~~~~~~~~~~~~~~--~~-g~~~g~~~~~~-------~-~~ 330 (542)
T TIGR02402 273 ----RPVHLIAESDLNDPSLV-----TPRED--GGYGLDAQWNDDFHHALHVL--LT-GERQGYYADFG-------D-PL 330 (542)
T ss_pred ----ceEEEEEecCCCCCccc-----ccccC--CccceEEEECchHHHHHHHH--hc-CCcceeecccC-------c-CH
Confidence 34999999984322110 00000 011 2468999999999961 21 12334443310 0 12
Q ss_pred HHHHHHHHHHHhhHHhhhc--ccchhhhccccCCcccccccccccCCCCccccCCCCceeeeccccc---cccHHHHhcC
Q 002079 688 AVEEQMLAAAKDHIQVGLA--ANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHD---NETLFDVVSL 762 (971)
Q Consensus 688 ~~~~~~l~~~~d~i~~gla--Gnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HD---n~tL~D~l~~ 762 (971)
+.+... +..|.. |....|. + ...|.|.+. ..|.+.|||++||| |.++++.+..
T Consensus 331 ~~l~~~-------l~~g~~~~~~~~~~~----------~----~~~~~~~~~-~~~~~~vnfl~nHD~~gn~~~~~Rl~~ 388 (542)
T TIGR02402 331 AALAKT-------LRDGFVYDGEYSPFR----------G----RPHGRPSGD-LPPHRFVVFIQNHDQIGNRALGERLSQ 388 (542)
T ss_pred HHHHHH-------HHHhcccCccccccc----------c----ccCCCCCCC-CCHHHEEEEccCcccccccchhhhhhh
Confidence 222211 211211 1111110 0 012233333 35788999999999 6666665432
Q ss_pred -----------------CCeeeEeccccccccCCCCCC-CC-C----------CCCCCccccCCCCCCCCCCCCCCC---
Q 002079 763 -----------------KGIPFFHCGDEILRSKSLDRD-SY-N----------SGDWLNRIDFSYNSNNWGVGLPPK--- 810 (971)
Q Consensus 763 -----------------~GiPfiy~GdEigrSks~d~n-sY-~----------sgD~~N~~dw~~~~n~w~~GlP~~--- 810 (971)
.||||||||+|+||+|+..-- .. + ....|..+.|... .+.-|..
T Consensus 389 ~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~----~~pdp~~~~~ 464 (542)
T TIGR02402 389 LLSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPE----DVPDPQDEET 464 (542)
T ss_pred cCCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccc----cCCCCCchhh
Confidence 299999999999999973100 00 0 0001111212100 0000000
Q ss_pred -CcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcC
Q 002079 811 -EKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDG 889 (971)
Q Consensus 811 -~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~ 889 (971)
..|...|.... .....+++++||+||+|||++|+||+++.+.+.... .. .++++++.. .
T Consensus 465 ~~~~~~~W~~~~-----------~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~---~~----~~~~~~~~~-~- 524 (542)
T TIGR02402 465 FLRSKLDWAEAE-----------SGEHARWLAFYRDLLALRRELPVLLLPGARALEVVV---DE----DPGWVAVRF-G- 524 (542)
T ss_pred HhhccCCccccc-----------ccchHHHHHHHHHHHHHhccCccccCCCcccceeee---cC----CCCEEEEEE-C-
Confidence 01223343210 012257999999999999999999999987766433 11 256888883 2
Q ss_pred CCCCCCccccCCCCCEEEEEEeCCCCcEEE
Q 002079 890 HEGVPGLSQLDSNYSYIVVIFNSSPTEVSF 919 (971)
Q Consensus 890 ~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~ 919 (971)
.++++|++|.+++++++
T Consensus 525 -------------~~~~~v~~N~~~~~~~~ 541 (542)
T TIGR02402 525 -------------RGELVLAANLSTSPVAV 541 (542)
T ss_pred -------------CCeEEEEEeCCCCCcCC
Confidence 15799999999987653
No 10
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-71 Score=643.63 Aligned_cols=696 Identities=27% Similarity=0.353 Sum_probs=490.7
Q ss_pred ccceeEEEeCCeeEeeCCCCCCeEEEEEeCCCCeeeecceeeccceEEEeeccCCCCChhhhhcCCcccccceeeeCCcc
Q 002079 92 LYSRAYWVSESIIAWNVDVPDGSCYLYASRTAALSISYGGIQGADVEIELQEDKGGLPANVIEKFPHIRDYKAFKVPAGS 171 (971)
Q Consensus 92 ~~~~a~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~ 171 (971)
-..|++|++...++|+..... +-.++...++.. .+..++|+.....++..+.++++++..|. ++...
T Consensus 6 ~~sr~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~-------~~~~~~~e~~~~~~p~~~ve~~~~~d~~~---~~~~~ 72 (757)
T KOG0470|consen 6 ISSRFYWHTKLVIVWSVDTLE---KTGALKPAKLEF-------YDLRSALEAKSGDLPADVVEKFYEIDPFL---VPFAL 72 (757)
T ss_pred hhhcceecccceEEeeeeccc---cccccccccccc-------hhhHHHhhhhcCCCChHHhhccccccccc---ccccc
Confidence 457899999999999876322 122222233322 22234555555677877889999999875 45455
Q ss_pred chHHHHHhhhhc--cccccccccccccccccccccCCCCCCccEEeCCe-eEEEEEcCCCCeEEEE-EecCCCCCCCceE
Q 002079 172 DAKLLLKCQLAV--ADRKCSDATGLQLPGILDELFSYDGPLGALYAEET-VSLYLWAPTAQSVSAC-IYRDPLGGNPLEV 247 (971)
Q Consensus 172 ~~~~~l~~q~~~--~~g~~~~~t~vq~~~~lD~~y~~~~~LGa~~~~~~-v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~ 247 (971)
.++..++.+..+ -+++ ..-|++.+++. |+ +||++.+.++ +.|..|||.|+.|.|+ .|+.|+. ..
T Consensus 73 ~~~~~~~~~~~~~~f~~~----~~~~l~~~~~~---y~-~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~~----~~ 140 (757)
T KOG0470|consen 73 FLRERYKQLDDGLEFIGK----SEGGLSAFSRG---YE-PLGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWNP----SS 140 (757)
T ss_pred cchhhHHHHHHHhhhhhh----ccCChhhhhcc---cc-ccceeccCCCceeeeeecccccccccccccCCCCC----cc
Confidence 566666555543 1221 12566666666 34 8999998776 9999999999999999 5666653 22
Q ss_pred Eec--ccCCCEEEEEeCCC--CCCceEEEEEEEecCCCccccceeecCccccccccCCCccEEEeCCCCCCCCCcccccc
Q 002079 248 VQL--KENDGVWSIKGPKS--WEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLV 323 (971)
Q Consensus 248 ~~M--~~~~GvW~v~~~~~--~~G~~Y~Y~v~~~~p~~g~~~~~~vtDPYa~~ls~ng~~s~vvdl~~~~~~p~~W~~~~ 323 (971)
..| ++..|+|++.++.. +.+..+.+.+...++.+...+++..+|||++-+...+...|...+......+++|+...
T Consensus 141 ~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~e~~w~~~~ 220 (757)
T KOG0470|consen 141 NELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYWDPSPEFDWGFKH 220 (757)
T ss_pred cccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCCCcccceeeccCCCCCcccccccC
Confidence 333 67889999999965 77777777777666666555688999999999998888888877766667778998752
Q ss_pred cCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccc
Q 002079 324 YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENW 403 (971)
Q Consensus 324 ~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~ 403 (971)
.+|.+ +.++++|||+|||+||.+++++.. +|.|++|++| .++|||+| |+|||||||||++..
T Consensus 221 -~~p~~-P~~sL~IYE~HVrgfS~~E~~v~~--~~gY~~FteK---vlphlK~L---G~NaiqLmpi~Ef~~-------- 282 (757)
T KOG0470|consen 221 -SRPKI-PESSLRIYELHVRGFSSHESKVNT--RGGYLGFTEK---VLPHLKKL---GYNAIQLMPIFEFGH-------- 282 (757)
T ss_pred -CCCCC-ChhheEEEEEeeccccCCCCcccc--ccchhhhhhh---hhhHHHHh---CccceEEeehhhhhh--------
Confidence 33332 334999999999999999988766 5559999997 36666555 999999999999841
Q ss_pred cccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCC
Q 002079 404 KSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNP 483 (971)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~ 483 (971)
.-.+|||.|.+||||.++||| |
T Consensus 283 ---------------------------------------------------------~~~s~GY~~~nFFapssrYgt-~ 304 (757)
T KOG0470|consen 283 ---------------------------------------------------------YYASWGYQVTNFFAPSSRYGT-P 304 (757)
T ss_pred ---------------------------------------------------------hhhccCcceeEeecccccccC-C
Confidence 015999999999999999999 5
Q ss_pred CCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHH
Q 002079 484 NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERL 563 (971)
Q Consensus 484 ~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~ 563 (971)
+.+.||+|||+||++||.+||.||||||+||+++ ++-+..+.||+++|++|++.++ +.+.+++|.+.+|++|+||++|
T Consensus 305 ~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~-n~~d~l~~fdGid~~~Yf~~~~-r~~h~~~~~r~fn~~~~~V~rf 382 (757)
T KOG0470|consen 305 ESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAK-NSKDGLNMFDGIDNSVYFHSGP-RGYHNSWCSRLFNYNHPVVLRF 382 (757)
T ss_pred CcccchHHHHHHHHHHhhCCcEEehhhhhhhccc-CcCCcchhccCcCCceEEEeCC-cccccccccccccCCCHHHHHH
Confidence 5688999999999999999999999999999998 6666778899999888887777 6678899999999999999999
Q ss_pred HHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCCCCcEEecccccccccccccccccccccccCC
Q 002079 564 IIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSG 643 (971)
Q Consensus 564 i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~g 643 (971)
|+++|++|++||||||||||+|++|.+....-+ .+++|.-++.+|+.|++.++....+...|.+..+.+
T Consensus 383 lL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~-----------~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~ 451 (757)
T KOG0470|consen 383 LLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNA-----------AGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGG 451 (757)
T ss_pred HHHHHHHHHHheeccceEEcchhhhhhhccccc-----------cccCCcchhhhccCCCcccccHHHHHHhhcchhhhc
Confidence 999999999999999999999999987543211 124455677888888887766555556677777766
Q ss_pred CcccccchHHHHHHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccc
Q 002079 644 TGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVK 723 (971)
Q Consensus 644 tgig~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~ 723 (971)
+. +.+++..+.+=..+.+ ..|..||++..... .+..+.+....+ .+|.+ . .+-+...
T Consensus 452 ~~-~~It~~~D~~gm~~~~-~~P~~~g~~~~d~~------------yr~~~~~~~k~~-~~Lk~----~----~~~~~~~ 508 (757)
T KOG0470|consen 452 TP-GLITDAEDVSGMPGLG-CFPVWQGGAGFDGL------------YRLAVRLFDKWI-QLLKG----S----SDAEWIM 508 (757)
T ss_pred CC-cceEeeeccccCCCcC-Cccccccccccchh------------hhHHhhhHHHHH-HHhcc----C----chhheec
Confidence 65 4555544433222211 34555555543100 010111000011 11111 1 1112344
Q ss_pred cccccccCCCCccccCCCCceeeeccccccccHHHHhcCC----------------------------------------
Q 002079 724 GSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVSLK---------------------------------------- 763 (971)
Q Consensus 724 Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~~~---------------------------------------- 763 (971)
|+-.+...+ ..-|...|||+++||..++.|+.++.
T Consensus 509 gs~~~~ltN-----~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~l 583 (757)
T KOG0470|consen 509 GSIDYTLTN-----RRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGL 583 (757)
T ss_pred cCcceeeec-----cccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 543211111 14588899999999998888843322
Q ss_pred --CeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHH
Q 002079 764 --GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALE 841 (971)
Q Consensus 764 --GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~ 841 (971)
|+|+++||+|+|+++.+|+++|++..|++.. ++++.|..+|+.++.++..+++++.+.
T Consensus 584 g~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~-------------r~~~f~~~~~~~~r~~~~l~~F~~~~~------- 643 (757)
T KOG0470|consen 584 GGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYA-------------RRKRFDLADSDLLRYRRQLNSFDREMN------- 643 (757)
T ss_pred cCccceeccccccCCccccCCCcccCCcccccc-------------CccccccccchhhhhhhhhhhhhhHHH-------
Confidence 9999999999999999999999866555544 445677888988888766666666532
Q ss_pred HHHHHHHHHhcCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEc
Q 002079 842 NFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVS 921 (971)
Q Consensus 842 ~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~l 921 (971)
.-++...+.+.++...+...++.+.+.|... +.+++|.+.++.. +..+.|.+|+......+-+
T Consensus 644 -~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~-----~~~~vfn~h~~~s-----------~~d~~vg~n~~~~~~iVl~ 706 (757)
T KOG0470|consen 644 -LLEERNGFTTSELQYISLKHEADEVIVFERG-----PLLFVFNFHDSNS-----------YIDYRVGFNAPGKYTIVLN 706 (757)
T ss_pred -HHHHhccccccccccccccchhhheeeeccC-----CeEEEEEecCCCC-----------CceeEEEecCCCceEEEEC
Confidence 2356677788899999999999999999733 5799999998753 3669999999999988888
Q ss_pred CCCC-CCceEeeccee-cc-ccccccCcceeecCcEEEEcCceEEEEEEcc
Q 002079 922 PALQ-GKNLQLHPIQV-KS-VDEIVKNSSYEANSGCFVIPPRTTSVFVEPR 969 (971)
Q Consensus 922 p~~~-~~~~~l~~~~~-~~-~d~~v~~~~~~~~~g~~tVpa~S~aVfv~~~ 969 (971)
|+.. +.+|....... .. .|-...+. ...-.+-.|.++..|+....
T Consensus 707 sd~p~~~~~~rl~dt~~~~p~d~~~~g~---~~~l~VY~~~~~a~vl~~~~ 754 (757)
T KOG0470|consen 707 SDRPKGGGWNRLDDTALFFPYDFRSEGR---PVSLQVYIPSRTATVLALLD 754 (757)
T ss_pred CCCCCCCCccccccccccCccccccCCe---eeeEEEEeccCcceEeeecc
Confidence 8653 44443211110 00 11111000 01225677888888877644
No 11
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=5.3e-65 Score=609.49 Aligned_cols=303 Identities=23% Similarity=0.361 Sum_probs=243.1
Q ss_pred CCccEEeC----CeeEEEEEcCCCCeEEEEE-ecCCCCCCCceEEec-cc-CCCEEEEEeCCCCCCceEEEEEEEecCCC
Q 002079 209 PLGALYAE----ETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KE-NDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (971)
Q Consensus 209 ~LGa~~~~----~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~-~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~ 281 (971)
.|||++.+ ++++||||||+|++|+|++ |+.+.+ ...+| +. ..|+|++.+++..+|.+|+|+|+.. .
T Consensus 16 ~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~----~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~---~ 88 (613)
T TIGR01515 16 LLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDG----REHPMRRRNDNGIWELFIPGIGEGELYKYEIVTN---N 88 (613)
T ss_pred hcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCC----ceecceEecCCCEEEEEeCCCCCCCEEEEEEECC---C
Confidence 59999987 6999999999999999996 655443 34678 33 5799999999999999999999731 1
Q ss_pred ccccceeecCccccccccCCC-ccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCccc
Q 002079 282 LQIEKCYANDPYARGLSSDGR-RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGY 360 (971)
Q Consensus 282 g~~~~~~vtDPYa~~ls~ng~-~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y 360 (971)
| +...++||||+.+..++. .|+++|++.+.|.|.+|... ++|.....++++|||+|||+|+. .|+|
T Consensus 89 g--~~~~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~~w~~~--~~~~~~~~~~~~iYe~hv~~~~~---------~g~~ 155 (613)
T TIGR01515 89 G--EIRLKADPYAFYAEVRPNTASLVYDLEGYSWQDQKWQEK--RKAKTPYEKPVSIYELHLGSWRH---------GLSY 155 (613)
T ss_pred C--cEEEeCCCCEeeeccCCCCcEEEECCccCccCchhhhhc--ccccCcccCCceEEEEehhhccC---------CCCH
Confidence 2 345789999999887654 78899999889999999874 44443334578999999999974 2999
Q ss_pred ccccccchhhhhhH-HHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhh
Q 002079 361 LAFTLQNSAGVSHL-KKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439 (971)
Q Consensus 361 ~g~~e~~s~~i~hL-~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (971)
.+++++ | +||++||||+||||||++++.
T Consensus 156 ~~i~~~-------l~dyl~~LGvt~i~L~Pi~e~~~-------------------------------------------- 184 (613)
T TIGR01515 156 RELADQ-------LIPYVKELGFTHIELLPVAEHPF-------------------------------------------- 184 (613)
T ss_pred HHHHHH-------HHHHHHHcCCCEEEECCcccCCC--------------------------------------------
Confidence 999764 5 888999999999999998752
Q ss_pred hhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCC
Q 002079 440 LEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSG 519 (971)
Q Consensus 440 l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g 519 (971)
..||||++.+||+|+++||| .+|||+||++||++||+|||||||||++..+
T Consensus 185 ----------------------~~~wGY~~~~y~~~~~~~Gt-------~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 185 ----------------------DGSWGYQVTGYYAPTSRFGT-------PDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred ----------------------CCCCCCCcccCcccccccCC-------HHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 25899999999999999999 3589999999999999999999999998654
Q ss_pred CCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCc----------
Q 002079 520 PFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM---------- 589 (971)
Q Consensus 520 ~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~---------- 589 (971)
.. ...++.. |.|++.....+.. +.++..++|++|++|+++|++++++|++||||||||||++.++.
T Consensus 236 ~~--~~~~~~~-~~y~~~~~~~~~~-~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~ 311 (613)
T TIGR01515 236 HG--LAEFDGT-PLYEHKDPRDGEH-WDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGE 311 (613)
T ss_pred ch--hhccCCC-cceeccCCccCcC-CCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccc
Confidence 31 1223332 3344432222222 22345688999999999999999999999999999999986552
Q ss_pred --------------HHHHHHHHHHHHhhcccccCCCCCCcEEeccccc
Q 002079 590 --------------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (971)
Q Consensus 590 --------------~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd 623 (971)
.++|+++++.|+++.| +++++||.|.
T Consensus 312 ~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p--------~~~liaE~~~ 351 (613)
T TIGR01515 312 WSPNEDGGRENLEAVDFLRKLNQTVYEAFP--------GVVTIAEEST 351 (613)
T ss_pred ccccccCCcCChHHHHHHHHHHHHHHHHCC--------CeEEEEEeCC
Confidence 4789999999999884 6999999763
No 12
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-64 Score=616.87 Aligned_cols=532 Identities=19% Similarity=0.263 Sum_probs=354.8
Q ss_pred CCCccEEeC----CeeEEEEEcCCCCeEEEEE-ecCCCCCCCceEEec-cc-CCCEEEEEeCCCCCCceEEEEEEEecCC
Q 002079 208 GPLGALYAE----ETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KE-NDGVWSIKGPKSWEGCYYVYEVSVYHPS 280 (971)
Q Consensus 208 ~~LGa~~~~----~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~-~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~ 280 (971)
..|||++.+ ++++||||||.|++|+|+. |+.+.+ ...+| +. .+|+|++++++...|..|+|+|+.-
T Consensus 118 ~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~~----~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~--- 190 (726)
T PRK05402 118 ETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWDG----RRHPMRLRGESGVWELFIPGLGEGELYKFEILTA--- 190 (726)
T ss_pred hccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCCC----ccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCC---
Confidence 379999985 7999999999999999996 666543 24678 44 7899999999999999999999731
Q ss_pred CccccceeecCccccccccC-CCccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcc
Q 002079 281 ALQIEKCYANDPYARGLSSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGG 359 (971)
Q Consensus 281 ~g~~~~~~vtDPYa~~ls~n-g~~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~ 359 (971)
.+ ....+.||||+.+..+ ...|+|+|++.+.|++.+|... +++.....++++|||+|||+|+.. .+....|+
T Consensus 191 ~g--~~~~~~DPYa~~~~~~~~~~s~v~d~~~~~w~~~~~~~~--~~~~~~~~~~~~iYe~hv~~f~~~---~~~~~~g~ 263 (726)
T PRK05402 191 DG--ELLLKADPYAFAAEVRPATASIVADLSQYQWNDAAWMEK--RAKRNPLDAPISIYEVHLGSWRRH---EDGGRFLS 263 (726)
T ss_pred CC--cEeecCCCceEEEecCCCCcEEEeCCccCCCCCcchhhc--ccccCcccCCcEEEEEehhhhccC---CCCCcccC
Confidence 22 3456899999999875 3478999998889999999764 444334568899999999999975 12344689
Q ss_pred cccccccchhhhhhH-HHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhh
Q 002079 360 YLAFTLQNSAGVSHL-KKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAE 438 (971)
Q Consensus 360 y~g~~e~~s~~i~hL-~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (971)
|.+++++ | +||++|||||||||||++++.
T Consensus 264 ~~~i~~~-------l~~ylk~LGv~~i~L~Pi~e~~~------------------------------------------- 293 (726)
T PRK05402 264 YRELADQ-------LIPYVKEMGFTHVELLPIAEHPF------------------------------------------- 293 (726)
T ss_pred HHHHHHH-------HHHHHHHcCCCEEEECCcccCCC-------------------------------------------
Confidence 9888764 5 888999999999999998752
Q ss_pred hhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCC
Q 002079 439 VLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGS 518 (971)
Q Consensus 439 ~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~ 518 (971)
..+|||++.+||+|+++||| ++|||+||++||++||+||||+|+||++.+
T Consensus 294 -----------------------~~~~GY~~~~y~ai~~~~Gt-------~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~ 343 (726)
T PRK05402 294 -----------------------DGSWGYQPTGYYAPTSRFGT-------PDDFRYFVDACHQAGIGVILDWVPAHFPKD 343 (726)
T ss_pred -----------------------CCCCCCCcccCCCcCcccCC-------HHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Confidence 25899999999999999999 468999999999999999999999999765
Q ss_pred CCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC----------
Q 002079 519 GPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI---------- 588 (971)
Q Consensus 519 g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~---------- 588 (971)
+.. ...+|.. +.|++.....|....++. .++|++|++|+++|++++++|+++|||||||||++.++
T Consensus 344 ~~~--~~~~~~~-~~y~~~~~~~~~~~~w~~-~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g 419 (726)
T PRK05402 344 AHG--LARFDGT-ALYEHADPREGEHPDWGT-LIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEG 419 (726)
T ss_pred ccc--hhccCCC-cceeccCCcCCccCCCCC-ccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccc
Confidence 321 2234442 445443222343333332 26899999999999999999999999999999998665
Q ss_pred --------------cHHHHHHHHHHHHhhcccccCCCCCCcEEecccccccc-cccc--ccccc-ccccccCCCcccccc
Q 002079 589 --------------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGE-VAKN--GRGVN-ASQFNLSGTGIGSFN 650 (971)
Q Consensus 589 --------------~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~ge-v~~~--~~~~~-a~q~~~~gtgig~fn 650 (971)
..++|+++++.|+++.| +++++||.+..-. +... ..+.. ..+.| .+.++
T Consensus 420 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p--------~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn-----~~~~~ 486 (726)
T PRK05402 420 EWIPNIYGGRENLEAIDFLRELNAVVHEEFP--------GALTIAEESTAWPGVTRPTEEGGLGFGYKWN-----MGWMH 486 (726)
T ss_pred ccccccccCcCCHHHHHHHHHHHHHHHHHCC--------CeEEEEECCCCCcCccccccCCCCCCCceec-----CCcch
Confidence 25789999999999985 6999999653211 1000 00000 00111 11222
Q ss_pred hHHHHHHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCccccccccccc
Q 002079 651 DRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTY 730 (971)
Q Consensus 651 DrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y 730 (971)
|-++ .+... +. ...+.. +. +...+ .|
T Consensus 487 ~~l~-~~~~~-~~----~~~~~~-----------~~--------------~~~~~-----------------------~~ 512 (726)
T PRK05402 487 DTLD-YMERD-PI----YRKYHH-----------NE--------------LTFSL-----------------------LY 512 (726)
T ss_pred HHHH-HHhhC-cc----cccccc-----------cc--------------hhHHH-----------------------hH
Confidence 2222 22110 00 000000 00 00000 00
Q ss_pred CCCCccccCCCCceeeeccccccc-----cHHHHh-------------------cCCCeeeEeccccccccCCCCCCCCC
Q 002079 731 DGTPVAYALCPTETISYVSAHDNE-----TLFDVV-------------------SLKGIPFFHCGDEILRSKSLDRDSYN 786 (971)
Q Consensus 731 ~g~p~~ya~~P~~~iNyVs~HDn~-----tL~D~l-------------------~~~GiPfiy~GdEigrSks~d~nsY~ 786 (971)
.|. +..+++++||.. |+.+.+ ...|+|+||||+|+|+++..+
T Consensus 513 -----~~~----e~~~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~----- 578 (726)
T PRK05402 513 -----AYS----ENFVLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWN----- 578 (726)
T ss_pred -----hhh----ccccCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCC-----
Confidence 010 113466777752 443322 233999999999999987532
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhcc
Q 002079 787 SGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQE 866 (971)
Q Consensus 787 sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~ 866 (971)
..++|+|+..++. ....+.++||+|++||+++|+|+.++.+..
T Consensus 579 ---~~~~l~W~~~~~~--------------------------------~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~-- 621 (726)
T PRK05402 579 ---HDASLDWHLLDFP--------------------------------WHRGVQRLVRDLNHLYRAEPALHELDFDPE-- 621 (726)
T ss_pred ---ccCcCCccccCCc--------------------------------chHHHHHHHHHHHHHHHhChhhhccccCcC--
Confidence 2357778642110 114689999999999999999998875431
Q ss_pred ceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCc---EEEEcCCCCCCceEeeccee--c-ccc
Q 002079 867 RICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTE---VSFVSPALQGKNLQLHPIQV--K-SVD 940 (971)
Q Consensus 867 ~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~---~~~~lp~~~~~~~~l~~~~~--~-~~d 940 (971)
...+.... +...+|++|.|.+... .+.++||+|.++++ ..+.+|. +..|+..-... . +..
T Consensus 622 ~~~~~~~~-~~~~~vlaf~R~~~~~-----------~~~vlvv~N~~~~~~~~y~i~~p~--~g~~~~ilnsd~~~~gg~ 687 (726)
T PRK05402 622 GFEWIDAD-DAENSVLSFLRRGKDD-----------GEPLLVVCNFTPVPRHDYRLGVPQ--AGRWREVLNTDAEHYGGS 687 (726)
T ss_pred CeeEEecc-cCCCCEEEEEEecCCC-----------CCeEEEEEeCCCCcccceEECCCC--CCeEEEEEcCcchhhCCC
Confidence 22333221 1235699999985321 26799999999865 3556664 23454322110 0 011
Q ss_pred ccccCccee---------ecCcEEEEcCceEEEEEEcc
Q 002079 941 EIVKNSSYE---------ANSGCFVIPPRTTSVFVEPR 969 (971)
Q Consensus 941 ~~v~~~~~~---------~~~g~~tVpa~S~aVfv~~~ 969 (971)
..+...... .....++|||+|++||....
T Consensus 688 ~~~~~~~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 688 NVGNGGGVHAEEVPWHGRPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred CCCCCCceeccccccCCCCCEEEEEeCCCEEEEEEEcC
Confidence 111111111 01237999999999998753
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.4e-64 Score=608.83 Aligned_cols=534 Identities=19% Similarity=0.260 Sum_probs=353.5
Q ss_pred CCCccEEeCC----eeEEEEEcCCCCeEEEEE-ecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEEecCCC
Q 002079 208 GPLGALYAEE----TVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (971)
Q Consensus 208 ~~LGa~~~~~----~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~ 281 (971)
..|||++..+ +++||||||.|++|+|+. |+++.. ..++| +..+|+|++++++...|..|+|+|... .
T Consensus 25 ~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~----~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~---~ 97 (633)
T PRK12313 25 EYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRG----NAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQ---D 97 (633)
T ss_pred hcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCc----ccccccccCCCEEEEEeCCCCCCCEEEEEEECC---C
Confidence 4699999876 899999999999999994 666543 34788 558899999999989999999999642 1
Q ss_pred ccccceeecCcccccccc-CCCccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCccc
Q 002079 282 LQIEKCYANDPYARGLSS-DGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGY 360 (971)
Q Consensus 282 g~~~~~~vtDPYa~~ls~-ng~~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y 360 (971)
+ +...+.||||+.+.. +...|+|+|++.+.|++..|... +++......+++|||+|||+|+..+. ...|+|
T Consensus 98 g--~~~~~~DPya~~~~~~~~~~s~v~d~~~~~w~~~~~~~~--~~~~~~~~~~~~iYe~hv~~f~~~~~----~~~g~~ 169 (633)
T PRK12313 98 G--YQVEKIDPFAFYFEARPGTASIVWDLPEYKWKDGLWLAR--RKRWNALDRPISIYEVHLGSWKRNED----GRPLSY 169 (633)
T ss_pred C--eEEecCCCceEEEecCCCCceEECCCcccCCCChhhhhc--cccCCCCCCCceEEEEehhccccCCC----CCccCH
Confidence 2 345789999999876 34578999998888999999764 33322344789999999999997542 346999
Q ss_pred ccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhh
Q 002079 361 LAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVL 440 (971)
Q Consensus 361 ~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 440 (971)
.+++++ -|+||++||||+||||||++++.
T Consensus 170 ~~~~~~------ll~yl~~LGv~~i~L~Pi~~~~~--------------------------------------------- 198 (633)
T PRK12313 170 RELADE------LIPYVKEMGYTHVEFMPLMEHPL--------------------------------------------- 198 (633)
T ss_pred HHHHHH------HHHHHHHcCCCEEEeCchhcCCC---------------------------------------------
Confidence 988764 14888999999999999998753
Q ss_pred hcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCC
Q 002079 441 EKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGP 520 (971)
Q Consensus 441 ~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~ 520 (971)
..+|||++.+||+|+++||| .+|||+||++||++||+||||+|+||++..+.
T Consensus 199 ---------------------~~~~GY~~~~y~~i~~~~Gt-------~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~ 250 (633)
T PRK12313 199 ---------------------DGSWGYQLTGYFAPTSRYGT-------PEDFMYLVDALHQNGIGVILDWVPGHFPKDDD 250 (633)
T ss_pred ---------------------CCCCCCCCcCcCcCCCCCCC-------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCcc
Confidence 25899999999999999999 36899999999999999999999999986543
Q ss_pred CCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCc-----------
Q 002079 521 FDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM----------- 589 (971)
Q Consensus 521 ~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~----------- 589 (971)
. ...+|.. | +|...++.........+.++|++|++|+++|++++++|+++|||||||||++.++-
T Consensus 251 ~--~~~~~~~-~-~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~ 326 (633)
T PRK12313 251 G--LAYFDGT-P-LYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWT 326 (633)
T ss_pred c--ccccCCC-c-ceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcC
Confidence 1 1233432 3 33333332222222345688999999999999999999999999999999886542
Q ss_pred ------------HHHHHHHHHHHHhhcccccCCCCCCcEEecccccccccccccccccccccccCCCcc-cccchHHHHH
Q 002079 590 ------------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGI-GSFNDRIRDA 656 (971)
Q Consensus 590 ------------~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~gtgi-g~fnDrlRda 656 (971)
.++|+++++.|+++.| +++++||.|..-... ... ....|.++ ..||..+...
T Consensus 327 ~~~~~~~~~~~~~~fl~~~~~~v~~~~p--------~~~liaE~~~~~~~~------~~~-~~~gg~gfd~~w~~~~~~~ 391 (633)
T PRK12313 327 PNKYGGRENLEAIYFLQKLNEVVYLEHP--------DVLMIAEESTAWPKV------TGP-VEVGGLGFDYKWNMGWMND 391 (633)
T ss_pred CcccCCCCCcHHHHHHHHHHHHHHHHCC--------CeEEEEECCCCCccc------ccc-ccCCCCCcCceeCcHHHHH
Confidence 5689999999999984 689999987422110 000 00011122 2455545444
Q ss_pred HcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCcc
Q 002079 657 MLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVA 736 (971)
Q Consensus 657 vrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ 736 (971)
+.. .+.. +++... +. ...+..++... |
T Consensus 392 ~~~--~~~~---~~~~~~-------~~--------------~~~~~~~~~~~---------------------~------ 418 (633)
T PRK12313 392 TLR--YFEE---DPIYRK-------YH--------------HNLLTFSFMYA---------------------F------ 418 (633)
T ss_pred HHH--Hhhh---Cccccc-------cc--------------cccchHHHhhh---------------------h------
Confidence 332 0000 000000 00 00000000000 0
Q ss_pred ccCCCCceeeecccccc-----ccHHHHh-------------------cCCCeeeEeccccccccCCCCCCCCCCCCCCc
Q 002079 737 YALCPTETISYVSAHDN-----ETLFDVV-------------------SLKGIPFFHCGDEILRSKSLDRDSYNSGDWLN 792 (971)
Q Consensus 737 ya~~P~~~iNyVs~HDn-----~tL~D~l-------------------~~~GiPfiy~GdEigrSks~d~nsY~sgD~~N 792 (971)
.+..++.++||. .|+.+.+ ...|+|+||||+|+|+++..+. .+
T Consensus 419 -----~e~~~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~--------~~ 485 (633)
T PRK12313 419 -----SENFVLPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKH--------DE 485 (633)
T ss_pred -----hcccccCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCc--------cC
Confidence 011245567775 3443322 2339999999999999765321 14
Q ss_pred cccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceEEec
Q 002079 793 RIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHN 872 (971)
Q Consensus 793 ~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~~ 872 (971)
+|+|....+ .....++++||+||+||+++|+|+.++... ..+.+..
T Consensus 486 ~l~W~~~~~--------------------------------~~~~~l~~~~r~Li~LRr~~paL~~~d~~~--~~~~~l~ 531 (633)
T PRK12313 486 SLEWHLLED--------------------------------PMNAGMQRFTSDLNQLYKDEPALWELDFSP--DGFEWID 531 (633)
T ss_pred CCCccccCC--------------------------------hhHHHHHHHHHHHHHHHHhChHhhcccCCC--CCcEEEE
Confidence 677764211 011468999999999999999998765311 1122332
Q ss_pred CCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcE---EEEcCCCCCCceEeecce----eccccccccC
Q 002079 873 TGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEV---SFVSPALQGKNLQLHPIQ----VKSVDEIVKN 945 (971)
Q Consensus 873 ~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~---~~~lp~~~~~~~~l~~~~----~~~~d~~v~~ 945 (971)
.. +...++|+|.|.+... .+.++||+|.++++. .+.+|. +..|+..-.. ..+.. ....
T Consensus 532 ~~-~~~~~vlaf~R~~~~~-----------~~~llvv~N~s~~~~~~y~i~~p~--~g~~~~ilnsd~~~ygG~~-~~~~ 596 (633)
T PRK12313 532 AD-DADQSVLSFIRKGKNK-----------GDFLVVVFNFTPVEREDYRIGVPV--AGIYEEILNTDSEEFGGSG-KGNN 596 (633)
T ss_pred Cc-CCCCCEEEEEEeCCCC-----------CceEEEEEeCCCCcccceeECCCC--CCeEEEEEcCCchhcCCCC-cCCC
Confidence 21 1235799999986211 267999999998654 344553 3345532111 01111 1000
Q ss_pred c-------cee--ecCcEEEEcCceEEEEEEcc
Q 002079 946 S-------SYE--ANSGCFVIPPRTTSVFVEPR 969 (971)
Q Consensus 946 ~-------~~~--~~~g~~tVpa~S~aVfv~~~ 969 (971)
. ... .....++|||+|++||....
T Consensus 597 ~~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~ 629 (633)
T PRK12313 597 GTVKAQEGPWHGRPQSLTLTLPPLGALVLKPKR 629 (633)
T ss_pred CceeecccccCCCCCEEEEEeCCCEEEEEEEcc
Confidence 0 000 01236899999999998754
No 14
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-61 Score=579.44 Aligned_cols=528 Identities=19% Similarity=0.242 Sum_probs=341.9
Q ss_pred CCCccEEeCC----eeEEEEEcCCCCeEEEEE-ecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEEecCCC
Q 002079 208 GPLGALYAEE----TVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (971)
Q Consensus 208 ~~LGa~~~~~----~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~ 281 (971)
..|||+..+. +++|+||||.|++|+|+. |+.+.+ ..++| +...|+|++.+++..+|.+|+|+|+.. .
T Consensus 25 ~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~----~~~pM~~~~~GvW~~~vpg~~~g~~Yky~I~~~---~ 97 (639)
T PRK14706 25 HLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNG----FDHPMQRLDFGFWGAFVPGARPGQRYKFRVTGA---A 97 (639)
T ss_pred HhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCccc----ccccccccCCCEEEEEECCCCCCCEEEEEEECC---C
Confidence 3699998653 799999999999999995 666543 34788 557799999999999999999999752 1
Q ss_pred ccccceeecCccccccccCCCc-cEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCccc
Q 002079 282 LQIEKCYANDPYARGLSSDGRR-TLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGY 360 (971)
Q Consensus 282 g~~~~~~vtDPYa~~ls~ng~~-s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y 360 (971)
| ....+.||||+.+..+... |+|.+. ++.|++..|... +.|.. .++++|||+|||+|+.... ...|+|
T Consensus 98 g--~~~~~~DPYa~~~~~~~~~~svv~~~-~~~w~d~~w~~~--~~~~~--~~~~~IYE~Hvg~f~~~~~----g~~~ty 166 (639)
T PRK14706 98 G--QTVDKMDPYGSFFEVRPNTASIIWED-RFEWTDTRWMSS--RTAGF--DQPISIYEVHVGSWARRDD----GWFLNY 166 (639)
T ss_pred C--CEEeccCcceEEEecCCCCceEECCC-CCCCCCcccccc--cCCcc--CCCcEEEEEehhhcccCCC----CCccCH
Confidence 2 2356899999998876554 554444 578888888653 33432 3569999999999986431 123677
Q ss_pred ccccccchhhhhhH-HHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhh
Q 002079 361 LAFTLQNSAGVSHL-KKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEV 439 (971)
Q Consensus 361 ~g~~e~~s~~i~hL-~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (971)
.+++++ | +||++|||||||||||++++.
T Consensus 167 ~~~~~~-------l~~ylk~lG~t~velmPv~e~~~-------------------------------------------- 195 (639)
T PRK14706 167 RELAHR-------LGEYVTYMGYTHVELLGVMEHPF-------------------------------------------- 195 (639)
T ss_pred HHHHHH-------HHHHHHHcCCCEEEccchhcCCC--------------------------------------------
Confidence 766554 5 788899999999999998753
Q ss_pred hhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCC
Q 002079 440 LEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSG 519 (971)
Q Consensus 440 l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g 519 (971)
..+|||++.+||+|+++||+ .+|||+||++||++||+|||||||||++..+
T Consensus 196 ----------------------~~~wGY~~~~~~~~~~~~g~-------~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~ 246 (639)
T PRK14706 196 ----------------------DGSWGYQVTGYYAPTSRLGT-------PEDFKYLVNHLHGLGIGVILDWVPGHFPTDE 246 (639)
T ss_pred ----------------------CCCCCcCcccccccccccCC-------HHHHHHHHHHHHHCCCEEEEEecccccCcch
Confidence 25899999999999999998 4699999999999999999999999997643
Q ss_pred CCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC-----------
Q 002079 520 PFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI----------- 588 (971)
Q Consensus 520 ~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~----------- 588 (971)
.. ...+|. .|.|++.....|...++.. ..+|..+++|+++|++++++|++||||||||||++.+|
T Consensus 247 ~~--l~~~dg-~~~y~~~~~~~g~~~~w~~-~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 247 SG--LAHFDG-GPLYEYADPRKGYHYDWNT-YIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred hh--hhccCC-CcceeccCCcCCcCCCCCC-cccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccccc
Confidence 21 122443 2545443222343222211 23688999999999999999999999999999998886
Q ss_pred -----------cHHHHHHHHHHHHhhcccccCCCCCCcEEeccccccc-ccccccccccccccccCCCcc-cccchHHHH
Q 002079 589 -----------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFG-EVAKNGRGVNASQFNLSGTGI-GSFNDRIRD 655 (971)
Q Consensus 589 -----------~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~g-ev~~~~~~~~a~q~~~~gtgi-g~fnDrlRd 655 (971)
...+|+++.+.|++.. |+++++||.|..- .+.. ....|-|+ +.||..+.+
T Consensus 323 ~~~~gg~~n~~a~~fl~~ln~~v~~~~--------p~~~~iAE~~~~~~~v~~---------~~~~G~gFD~~w~~~w~~ 385 (639)
T PRK14706 323 PNIHGGRENLEAIAFLKRLNEVTHHMA--------PGCMMIAEESTSFPGVTV---------PTPYGLGFDYKWAMGWMN 385 (639)
T ss_pred ccccCCcccHHHHHHHHHHHHHHHHhC--------CCeEEEEECCCCCcCccc---------ccCCCCccccEeccHHHH
Confidence 2367788888888877 4699999998521 1110 00001111 245544444
Q ss_pred HHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCc
Q 002079 656 AMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPV 735 (971)
Q Consensus 656 avrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~ 735 (971)
.+..- | ... + ..+.. ....|. -+.. |
T Consensus 386 ~~l~~--~--------~~~----~----------~~r~~----------~~~~lt-------------~~~~--y----- 411 (639)
T PRK14706 386 DTLAY--F--------EQD----P----------LWRKY----------HHHKLT-------------FFNV--Y----- 411 (639)
T ss_pred HHHHH--h--------ccC----c----------hhhhh----------chhccc-------------hhhh--h-----
Confidence 33320 0 000 0 00000 000000 0000 1
Q ss_pred cccCCCCceeeeccccccc-----cHHHH-------------------hcCCCeeeEeccccccccCCCCCCCCCCCCCC
Q 002079 736 AYALCPTETISYVSAHDNE-----TLFDV-------------------VSLKGIPFFHCGDEILRSKSLDRDSYNSGDWL 791 (971)
Q Consensus 736 ~ya~~P~~~iNyVs~HDn~-----tL~D~-------------------l~~~GiPfiy~GdEigrSks~d~nsY~sgD~~ 791 (971)
...+...|++|||.- +|..+ +...|+|+||||+|+|..+. ++ ..
T Consensus 412 ----~~~e~~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~e-----w~---~~ 479 (639)
T PRK14706 412 ----RTSENYVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTE-----WN---HD 479 (639)
T ss_pred ----hccccEecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCC-----CC---cc
Confidence 001223478999962 22221 11239999999999995322 11 12
Q ss_pred ccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceEEe
Q 002079 792 NRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFH 871 (971)
Q Consensus 792 N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~ 871 (971)
.+++|...+. .....+.+++|+|++||+++|+|+.++... .-..+.
T Consensus 480 ~~l~W~l~~~--------------------------------~~~~~l~~~~k~L~~L~k~~paL~~gd~~~--~~f~wi 525 (639)
T PRK14706 480 ASLPWYLTDV--------------------------------PDHRGVMNLVRRLNQLYRERPDWHRGDKRE--EGLYWV 525 (639)
T ss_pred cCCCCcccCC--------------------------------HHHHHHHHHHHHHHHHHHhCHHHhhCCCCC--CCeEEE
Confidence 4566653210 011368999999999999999999887532 112222
Q ss_pred cCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCC---cEEEEcCCCCCCceEeecce----eccccc---
Q 002079 872 NTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPT---EVSFVSPALQGKNLQLHPIQ----VKSVDE--- 941 (971)
Q Consensus 872 ~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~---~~~~~lp~~~~~~~~l~~~~----~~~~d~--- 941 (971)
... +....||+|.|.+..+ .+.|+||+|.++. ...+.+|. ...|+..... ..+...
T Consensus 526 ~~~-d~~~~VlaF~R~~~~~-----------~~~vlvV~Nfs~~~~~~y~ig~p~--~g~~~~i~nsd~~~~gG~g~~n~ 591 (639)
T PRK14706 526 SAD-DTDNSVYAYVRRDSES-----------GAWSLAVANLTPVYREQYRIGVPQ--GGEYRVLLSTDDGEYGGFGTQQP 591 (639)
T ss_pred Eee-cCCCCEEEEEEecCCC-----------CeeEEEEEeCCCCCcCCeEECCCC--CCeEEEEEcCCccccCCCCCCCC
Confidence 221 2235699999987532 2569999999994 55666664 3345432111 111110
Q ss_pred cccCc--cee--ecCcEEEEcCceEEEEEEc
Q 002079 942 IVKNS--SYE--ANSGCFVIPPRTTSVFVEP 968 (971)
Q Consensus 942 ~v~~~--~~~--~~~g~~tVpa~S~aVfv~~ 968 (971)
.+... .+. ..+-+++|||++++||...
T Consensus 592 ~~~~~~~~~~g~~~si~i~lp~~~~~~~~~~ 622 (639)
T PRK14706 592 DLMASQEGWHGQPHSLSLNLPPSSVLILEFV 622 (639)
T ss_pred ceeccccccCCCccEEEEEeCCcEEEEEEEC
Confidence 01000 000 0123689999999999874
No 15
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.7e-61 Score=574.05 Aligned_cols=531 Identities=19% Similarity=0.262 Sum_probs=351.2
Q ss_pred CCccEEe----CCeeEEEEEcCCCCeEEEEE-ecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEEecCCCc
Q 002079 209 PLGALYA----EETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSAL 282 (971)
Q Consensus 209 ~LGa~~~----~~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g 282 (971)
.|||+.. .++|+|+||||+|++|+|+. |+.+++ ..++| +..+|||++++++..+|.+|+|+|... .|
T Consensus 126 ~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg----~~~pM~~~~~GVWelfipg~~~G~~YKYeI~~~---~G 198 (730)
T PRK12568 126 ALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDV----RRHPMRQRIGGFWELFLPRVEAGARYKYAITAA---DG 198 (730)
T ss_pred hcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCc----cceecccCCCCEEEEEECCCCCCCEEEEEEEcC---CC
Confidence 5999985 25899999999999999995 666654 46889 568999999999999999999999752 23
Q ss_pred cccceeecCccccccccCCC-ccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccc
Q 002079 283 QIEKCYANDPYARGLSSDGR-RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYL 361 (971)
Q Consensus 283 ~~~~~~vtDPYa~~ls~ng~-~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y~ 361 (971)
....++||||+.+..++. .|.+.++..+.|++..|... +.|. ...++++|||+|||+|+..+.. ..++|.
T Consensus 199 --~~~~k~DPYA~~~e~~p~~asvV~~~~~~~W~d~~W~~~--r~~~-~~~~~~~IYEvHvgsf~~~~~~----~~~~~~ 269 (730)
T PRK12568 199 --RVLLKADPVARQTELPPATASVVPSAAAFAWTDAAWMAR--RDPA-AVPAPLSIYEVHAASWRRDGHN----QPLDWP 269 (730)
T ss_pred --eEeecCCCcceEeecCCCCCeEEcCCCCCCCCChhhhhc--cccc-CCCCCcEEEEEEhHHhcCCCCC----CCCCHH
Confidence 245689999999987654 56676777778998899775 4454 3679999999999999975422 347899
Q ss_pred cccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhhh
Q 002079 362 AFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLE 441 (971)
Q Consensus 362 g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 441 (971)
+++++ .|+||++|||||||||||++++.
T Consensus 270 ~la~~------ll~ylk~LGvt~I~LmPi~e~~~---------------------------------------------- 297 (730)
T PRK12568 270 TLAEQ------LIPYVQQLGFTHIELLPITEHPF---------------------------------------------- 297 (730)
T ss_pred HHHHH------HHHHHHHcCCCEEEECccccCCC----------------------------------------------
Confidence 88764 36888999999999999998752
Q ss_pred cCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCC
Q 002079 442 KLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF 521 (971)
Q Consensus 442 ~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~ 521 (971)
..+|||+|.+||+|+++||+ ++|||+||++||++||+||||+|+||++..+.
T Consensus 298 --------------------~~~wGY~~~~~~a~~~~~G~-------~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~- 349 (730)
T PRK12568 298 --------------------GGSWGYQPLGLYAPTARHGS-------PDGFAQFVDACHRAGIGVILDWVSAHFPDDAH- 349 (730)
T ss_pred --------------------CCCCCCCCCcCCccCcccCC-------HHHHHHHHHHHHHCCCEEEEEeccccCCcccc-
Confidence 26899999999999999999 46999999999999999999999999986532
Q ss_pred CCCCccCCCCCcceeecCC-CCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCc-----------
Q 002079 522 DDNSVLDKVVPGYYLRRNS-DGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM----------- 589 (971)
Q Consensus 522 ~~~s~lDk~vP~YY~r~~~-~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~----------- 589 (971)
....+|.. .+|...++ .|....+.++ .+|+.+++|+++|++++++|+++|||||||||++.++.
T Consensus 350 -~l~~fdg~--~~Ye~~d~~~g~~~~W~~~-~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 350 -GLAQFDGA--ALYEHADPREGMHRDWNTL-IYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred -ccccCCCc--cccccCCCcCCccCCCCCe-ecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccc
Confidence 11234442 23432222 2433223222 57999999999999999999999999999999886542
Q ss_pred -------------HHHHHHHHHHHHhhcccccCCCCCCcEEecccccc-cccccccccccccccccCCCccc-ccchHHH
Q 002079 590 -------------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF-GEVAKNGRGVNASQFNLSGTGIG-SFNDRIR 654 (971)
Q Consensus 590 -------------~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~-gev~~~~~~~~a~q~~~~gtgig-~fnDrlR 654 (971)
.++|+++++.|++..| +++++||.+.. ..+... ....|.|+. .||..+.
T Consensus 426 ~pn~~gg~en~ea~~Fl~~ln~~v~~~~P--------~~~~IAEest~~p~vt~p--------~~~gGlGFd~kwn~gwm 489 (730)
T PRK12568 426 VPNAHGGRENLEAVAFLRQLNREIASQFP--------GVLTIAEESTAWPGVTAP--------ISDGGLGFTHKWNMGWM 489 (730)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHHCC--------CeEEEEEcCCCCcccccc--------ccCCCCCcCcEeCChhH
Confidence 3578888889988874 69999997542 111100 000111111 2333332
Q ss_pred HHHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCC
Q 002079 655 DAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTP 734 (971)
Q Consensus 655 davrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p 734 (971)
+.+.. |... +|. .+ ....+.+..+| .|
T Consensus 490 ~d~l~-----------y~~~---dp~---------~r---~~~h~~ltf~~-----------------------~y---- 516 (730)
T PRK12568 490 HDTLH-----------YMQR---DPA---------ER---AHHHSQLTFGL-----------------------VY---- 516 (730)
T ss_pred HHHHH-----------HHhh---Cch---------hh---hhhhhhhhhhh-----------------------hh----
Confidence 22221 0000 000 00 00011111111 11
Q ss_pred ccccCCCCceeeecccccc-----ccHHHH-------------------hcCCCeeeEeccccccccCCCCCCCCCCCCC
Q 002079 735 VAYALCPTETISYVSAHDN-----ETLFDV-------------------VSLKGIPFFHCGDEILRSKSLDRDSYNSGDW 790 (971)
Q Consensus 735 ~~ya~~P~~~iNyVs~HDn-----~tL~D~-------------------l~~~GiPfiy~GdEigrSks~d~nsY~sgD~ 790 (971)
.-.+...+..+||. .+|.+. ....|.|+|+||+|++..+.-+.+
T Consensus 517 -----~~~e~fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~------- 584 (730)
T PRK12568 517 -----AFSERFVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHD------- 584 (730)
T ss_pred -----hhhccEeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCC-------
Confidence 01133456667775 233221 112299999999999975542211
Q ss_pred CccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceEE
Q 002079 791 LNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICF 870 (971)
Q Consensus 791 ~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f 870 (971)
..+||...++ + ..+.+.+++|+|++||+++|+|...+... ..+.|
T Consensus 585 -~~ldW~ll~~-------------------------~-------~h~~~~~~~~dLn~ly~~~paL~~~d~~~--~gf~w 629 (730)
T PRK12568 585 -QSLDWHLLDG-------------------------A-------RHRGMQQLVGDLNAALRRTPALYRGTHRA--DGFDW 629 (730)
T ss_pred -CCccccccCC-------------------------h-------hHHHHHHHHHHHHHHHHhChhhhcccCCC--CCeEE
Confidence 2466654211 0 12468899999999999999998775432 23344
Q ss_pred ecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcE---EEEcCCCCCCceEeecce----ecccc---
Q 002079 871 HNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEV---SFVSPALQGKNLQLHPIQ----VKSVD--- 940 (971)
Q Consensus 871 ~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~---~~~lp~~~~~~~~l~~~~----~~~~d--- 940 (971)
.... +....||+|.|.+..+ ..+.++||+|.++.++ .+-+|. +..|+..... ..+..
T Consensus 630 i~~~-d~~~sv~af~R~~~~~----------~~~~v~vV~Nft~~~~~~Y~ig~p~--~G~~~eilNsd~~~ygG~~~~n 696 (730)
T PRK12568 630 SVAD-DARNSVLAFIRHDPDG----------GGVPLLAVSNLTPQPHHDYRVGVPR--AGGWREILNTDSAHYGGSNLGN 696 (730)
T ss_pred EeCC-CCCCcEEEEEEecCCC----------CCCeEEEEECCCCCCccCeEECCCC--CCeEEEEEcCchhhhCCCCcCC
Confidence 4432 3345699999987431 1256999999999854 466664 3345432211 11110
Q ss_pred -ccccCcc--ee--ecCcEEEEcCceEEEEEEc
Q 002079 941 -EIVKNSS--YE--ANSGCFVIPPRTTSVFVEP 968 (971)
Q Consensus 941 -~~v~~~~--~~--~~~g~~tVpa~S~aVfv~~ 968 (971)
..+.... .. ..+.+++|||++++||...
T Consensus 697 ~~~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 697 SGRLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred CCceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 0111000 00 1234799999999999864
No 16
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.4e-60 Score=588.61 Aligned_cols=303 Identities=23% Similarity=0.335 Sum_probs=239.4
Q ss_pred CCccEEeC--------CeeEEEEEcCCCCeEEEE-EecCCCCCCCceEEecc--cCCCEEEEEeCCCCCCceEEEEEEEe
Q 002079 209 PLGALYAE--------ETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQLK--ENDGVWSIKGPKSWEGCYYVYEVSVY 277 (971)
Q Consensus 209 ~LGa~~~~--------~~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M~--~~~GvW~v~~~~~~~G~~Y~Y~v~~~ 277 (971)
.|||+... ++|+|+||||+|++|+|+ .|+.|++ ..++|+ ..+|+|++++++...|.+|+|+|+..
T Consensus 622 ~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~----~~~~m~~~~~~GvW~~fipg~~~G~~Yky~i~~~ 697 (1224)
T PRK14705 622 VLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDG----REHSMRSLGSSGVWELFIPGVVAGACYKFEILTK 697 (1224)
T ss_pred hcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCC----CcccceECCCCCEEEEEECCCCCCCEEEEEEEcC
Confidence 59999732 389999999999999999 5888765 346883 57899999999999999999999852
Q ss_pred cCCCccccceeecCccccccccCC-CccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCC
Q 002079 278 HPSALQIEKCYANDPYARGLSSDG-RRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDF 356 (971)
Q Consensus 278 ~p~~g~~~~~~vtDPYa~~ls~ng-~~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~ 356 (971)
.| ....+.||||+....+. ..|+|+|+ ++.|++.+|... +.+.....++++|||+|||+|+.
T Consensus 698 ---~g--~~~~k~DPyA~~~e~~p~~aS~V~d~-~~~w~d~~W~~~--r~~~~~~~~p~~IYEvHvgsf~~--------- 760 (1224)
T PRK14705 698 ---AG--QWVEKADPLAFGTEVPPLTASRVVEA-SYAFKDAEWMSA--RAERDPHNSPMSVYEVHLGSWRL--------- 760 (1224)
T ss_pred ---CC--cEEecCCccccccccCCCCCeEEeCC-CCCcCChhhhhc--cccCCCCcCCcEEEEEEeccccc---------
Confidence 23 34578999999988765 47899998 478999999864 33332234789999999999975
Q ss_pred CcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccch
Q 002079 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (971)
Q Consensus 357 rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (971)
.|+|.+++++ .|+|||+|||||||||||++++.
T Consensus 761 ~~~~~~l~~~------lldYlk~LGvt~IeLmPv~e~p~----------------------------------------- 793 (1224)
T PRK14705 761 GLGYRELAKE------LVDYVKWLGFTHVEFMPVAEHPF----------------------------------------- 793 (1224)
T ss_pred CCchHHHHHH------HHHHHHHhCCCEEEECccccCCC-----------------------------------------
Confidence 2789888753 36888888999999999998753
Q ss_pred hhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeecccc
Q 002079 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (971)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~ 516 (971)
.+||||++.+||+|+++||| .+|||+||++||++||+||||+||||++
T Consensus 794 -------------------------~~swGY~~~~y~ap~~ryGt-------~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 794 -------------------------GGSWGYQVTSYFAPTSRFGH-------PDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred -------------------------CCCCCCCccccCCcCcccCC-------HHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 26999999999999999998 4699999999999999999999999997
Q ss_pred CCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC--------
Q 002079 517 GSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI-------- 588 (971)
Q Consensus 517 ~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~-------- 588 (971)
..+. . ...+|.. |-|+|.....|....++ ...+|+++++|+++|+++++||+++|||||||||++.+|
T Consensus 842 ~d~~-~-l~~fdg~-~~y~~~d~~~g~~~~Wg-~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~ 917 (1224)
T PRK14705 842 KDSW-A-LAQFDGQ-PLYEHADPALGEHPDWG-TLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSRE 917 (1224)
T ss_pred cchh-h-hhhcCCC-cccccCCcccCCCCCCC-CceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccc
Confidence 5431 1 2234432 33444322234332222 234789999999999999999999999999999998776
Q ss_pred ----------------cHHHHHHHHHHHHhhcccccCCCCCCcEEeccccc
Q 002079 589 ----------------MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (971)
Q Consensus 589 ----------------~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd 623 (971)
..++|+++.+.|++.. |++++++|.+.
T Consensus 918 ~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~--------p~~~~IAEest 960 (1224)
T PRK14705 918 EGQWRPNRFGGRENLEAISFLQEVNATVYKTH--------PGAVMIAEEST 960 (1224)
T ss_pred cccccccccCCccChHHHHHHHHHHHHHHHHC--------CCeEEEEEcCC
Confidence 2457777777777765 57999999775
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.7e-56 Score=534.14 Aligned_cols=304 Identities=19% Similarity=0.240 Sum_probs=236.4
Q ss_pred CCCccEEeCCeeEEEEEcCCCCeEEEEE-ecCCCCCCCceEEec-ccCCCEEEEEeCC------CCCCceEEEEEEEecC
Q 002079 208 GPLGALYAEETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPK------SWEGCYYVYEVSVYHP 279 (971)
Q Consensus 208 ~~LGa~~~~~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvW~v~~~~------~~~G~~Y~Y~v~~~~p 279 (971)
..||+++.+++++||||||+|++|+|+. |+.|++ ..++| +...|+|++++|+ ..+|.+|+|+|+...
T Consensus 105 ~~lGa~~~~~g~~FrvWAP~A~~V~LvGdFN~W~~----~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~~Yky~i~~~~- 179 (758)
T PLN02447 105 EKFGFNRSEGGITYREWAPGAKAAALIGDFNNWNP----NAHWMTKNEFGVWEIFLPDADGSPAIPHGSRVKIRMETPD- 179 (758)
T ss_pred HhceeEEecCCEEEEEECCCCCEEEEEEecCCCCC----CccCceeCCCCEEEEEECCccccccCCCCCEEEEEEEeCC-
Confidence 4699999999999999999999999994 777754 34688 6678999999998 778999999998521
Q ss_pred CCccccceeecCccccccccC-CC-----ccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCC
Q 002079 280 SALQIEKCYANDPYARGLSSD-GR-----RTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVH 353 (971)
Q Consensus 280 ~~g~~~~~~vtDPYa~~ls~n-g~-----~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~ 353 (971)
| +..++.|||++....+ +. .|+++|+.. ..+..|... +|. .+.+++|||+||+.|+. +
T Consensus 180 --g--~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~--~~~y~w~~~---~~~--~~~~~~IYE~Hvg~~~~-~---- 243 (758)
T PLN02447 180 --G--RWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPE--EEKYVFKHP---RPP--RPAALRIYEAHVGMSSE-E---- 243 (758)
T ss_pred --C--cEEeecCchHheeeccCCccCCCCceEEeCCCC--CCCCCCCCC---CCC--CCCCCEEEEEeCCcccC-C----
Confidence 2 3567899999876554 32 578888753 345678753 332 45789999999998863 2
Q ss_pred CCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccc
Q 002079 354 PDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKS 433 (971)
Q Consensus 354 ~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (971)
...|+|.+|+++ .|+||++||+||||||||++++.
T Consensus 244 -~~~gty~~~~~~------~L~ylk~LG~t~I~LmPi~e~~~-------------------------------------- 278 (758)
T PLN02447 244 -PKVNSYREFADD------VLPRIKALGYNAVQLMAIQEHAY-------------------------------------- 278 (758)
T ss_pred -CCCCCHHHHHHH------HHHHHHHcCCCEEEECCccccCC--------------------------------------
Confidence 235999998753 58888999999999999998863
Q ss_pred cchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeec
Q 002079 434 FADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYN 513 (971)
Q Consensus 434 ~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyN 513 (971)
..+|||++.+||+|+++||+ .+|||+||++||++||+||||||+|
T Consensus 279 ----------------------------~~~wGY~~~~~fa~~~~~Gt-------p~dlk~LVd~aH~~GI~VilDvV~n 323 (758)
T PLN02447 279 ----------------------------YGSFGYHVTNFFAVSSRSGT-------PEDLKYLIDKAHSLGLRVLMDVVHS 323 (758)
T ss_pred ----------------------------CCCCCcCcccCcccccccCC-------HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 15899999999999999998 3589999999999999999999999
Q ss_pred cccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH---
Q 002079 514 HLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK--- 590 (971)
Q Consensus 514 Ht~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~--- 590 (971)
|++...... ...+|...+.||+.. ..|.. +.+....+|+++++|+++|++++++|++||||||||||++.+|..
T Consensus 324 H~~~~~~~g-l~~fDg~~~~Yf~~~-~~g~~-~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~h 400 (758)
T PLN02447 324 HASKNTLDG-LNGFDGTDGSYFHSG-PRGYH-WLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHH 400 (758)
T ss_pred ccccccccc-ccccCCCCccccccC-CCCCc-CcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhcccc
Confidence 998643211 234666555677643 33432 112222478999999999999999999999999999999987731
Q ss_pred -----------------------HHHHHHHHHHHhhcccccCCCCCCcEEeccccc
Q 002079 591 -----------------------STMMKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (971)
Q Consensus 591 -----------------------~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd 623 (971)
.+++.+.+.|+++. |++++++|.+.
T Consensus 401 g~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~--------p~~~~IAEd~s 448 (758)
T PLN02447 401 GLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLY--------PEAVTIAEDVS 448 (758)
T ss_pred CcccccccCcccccCCccChHHHHHHHHHHHHHHHhC--------CCeEEEEEcCC
Confidence 14566666666665 57999999764
No 18
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.6e-51 Score=492.25 Aligned_cols=471 Identities=16% Similarity=0.199 Sum_probs=303.5
Q ss_pred EeCCeeEEEEEcCC---CCeEEEEEecCCCCCCCceEEecc--c---CCCEEEEEeCCC--CCCceEEEEEEEecCCCcc
Q 002079 214 YAEETVSLYLWAPT---AQSVSACIYRDPLGGNPLEVVQLK--E---NDGVWSIKGPKS--WEGCYYVYEVSVYHPSALQ 283 (971)
Q Consensus 214 ~~~~~v~F~vWAPt---A~~V~L~ly~~~~~~~~~~~~~M~--~---~~GvW~v~~~~~--~~G~~Y~Y~v~~~~p~~g~ 283 (971)
+.++.+++||+.+. .++|.|.+..+.. ...++|. . ....|+++++.. .....|+|+|... +
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~----~- 86 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDNE----EYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWH----D- 86 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCCC----EEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeC----C-
Confidence 46789999999874 4577776433221 2467882 2 235699998753 4446799998531 1
Q ss_pred ccceeecCccccccccCCCccEEEeCCCCCCCCCcccccccCCCCCCCC-CCceEEEEEcccccccCCCCCC--------
Q 002079 284 IEKCYANDPYARGLSSDGRRTLLVNLDSDTLKPEGWDKLVYEKPDILSF-SDISIYELHVRDFSVSDHTVHP-------- 354 (971)
Q Consensus 284 ~~~~~vtDPYa~~ls~ng~~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~-~d~vIYElHVrdFs~~d~s~~~-------- 354 (971)
+.... ...|... .... + .....+... ...| .| .+.|||++.+++|..++++...
T Consensus 87 -~~~~~--------~~~g~~~-~~~~-~--~~~f~~~~~-~~~P---~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~ 149 (598)
T PRK10785 87 -RQRWF--------TPQGFSR-RPPA-R--LEQFAVDVP-DQGP---QWVADQVFYQIFPDRFARSLPREAVQDHVYYHH 149 (598)
T ss_pred -EEEEE--------cCCceee-ccCC-C--ccceEeeCC-CCCC---chhhcCEEEEechhhhcCCCcccCccCCceeec
Confidence 11111 1011000 0000 0 000011000 0222 23 7899999999999987763211
Q ss_pred -----------------------CCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCC
Q 002079 355 -----------------------DFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (971)
Q Consensus 355 -----------------------~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~ 411 (971)
-+.|++.|+++ +|+||++||||+|||+|||+.+
T Consensus 150 ~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~-------kLdYL~~LGv~~I~L~Pif~s~----------------- 205 (598)
T PRK10785 150 AAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISE-------KLPYLKKLGVTALYLNPIFTAP----------------- 205 (598)
T ss_pred cCCCcccccCcCCCcccccccccccCcCHHHHHH-------HHHHHHHcCCCEEEeCCcccCC-----------------
Confidence 13578887765 5999999999999999999764
Q ss_pred ccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHH
Q 002079 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (971)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~E 491 (971)
.|||||+.+|++++++|||. ++
T Consensus 206 ---------------------------------------------------s~hgYd~~Dy~~iDp~~Gt~-------~d 227 (598)
T PRK10785 206 ---------------------------------------------------SVHKYDTEDYRHVDPQLGGD-------AA 227 (598)
T ss_pred ---------------------------------------------------CCCCcCcccccccCcccCCH-------HH
Confidence 48999999999999999995 58
Q ss_pred HHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCc-------cCCCCC--cceeecCCCCccccCC---CCCCCCCCCHH
Q 002079 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSV-------LDKVVP--GYYLRRNSDGFIEHST---CMNNTASEHYM 559 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~-------lDk~vP--~YY~r~~~~G~~~~st---c~~d~a~e~~m 559 (971)
||+||++||++||+||||+|+|||+..++|+.... .+...| .||+..+ +|.+..+. ..+++|++|++
T Consensus 228 f~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~-~~~~~~w~g~~~lPdLN~~np~ 306 (598)
T PRK10785 228 LLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSD-DGRALDWLGYASLPKLDFQSEE 306 (598)
T ss_pred HHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECC-CCCcCCcCCCCcCccccCCCHH
Confidence 99999999999999999999999998877653221 011112 4665443 34443332 35689999999
Q ss_pred HHHHHHH----HHHHHHHh-CCccEEEEecCCCCc--------HHHHHHHHHHHHhhcccccCCCCCCcEEecccccccc
Q 002079 560 VERLIID----DLLCWAVN-YKVDGFRFDLMGHIM--------KSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGE 626 (971)
Q Consensus 560 v~k~i~D----sl~~W~~e-y~IDGFRfDlm~~~~--------~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~ge 626 (971)
|+++|++ .+++|+++ |||||||+|++.+++ .++|+++++++++++| +++++||.|....
T Consensus 307 v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~p--------d~~ligE~~~~~~ 378 (598)
T PRK10785 307 VVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENP--------EAYVLGEHFGDAR 378 (598)
T ss_pred HHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCC--------CeEEEEeccCChh
Confidence 9999995 79999997 999999999998884 5799999999999884 6899999996432
Q ss_pred cccccccccccccccCCCcccccchHHHHHHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhc
Q 002079 627 VAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLA 706 (971)
Q Consensus 627 v~~~~~~~~a~q~~~~gtgig~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~gla 706 (971)
.. .+..+... ....-.|...+|+.+.+.. + .|..+ ..+...+...+....
T Consensus 379 ~~-----l~~~~~d~-~mny~~f~~~~~~~~~~~~-~------~~~~~---------~~~~~~~~~~l~~~~-------- 428 (598)
T PRK10785 379 QW-----LQADVEDA-AMNYRGFAFPLRAFLANTD-I------AYHPQ---------QIDAQTCAAWMDEYR-------- 428 (598)
T ss_pred hh-----ccCccccc-cccchhhhhHHHHHhhccc-c------ccCcc---------CCCHHHHHHHHHHHH--------
Confidence 10 11111100 0000113334444443210 0 01000 011122222221100
Q ss_pred ccchhhhccccCCcccccccccccCCCCccccCCCCceeeeccccccccHHHHhc---------------CCCeeeEecc
Q 002079 707 ANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVS---------------LKGIPFFHCG 771 (971)
Q Consensus 707 Gnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~---------------~~GiPfiy~G 771 (971)
. .|. + ..-...+||++|||+.|+...+. +.|||+||||
T Consensus 429 ---~------------------~~~-----~-~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYG 481 (598)
T PRK10785 429 ---A------------------GLP-----H-QQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYG 481 (598)
T ss_pred ---H------------------hCC-----H-HHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEee
Confidence 0 010 0 00113479999999999876543 2299999999
Q ss_pred ccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHh
Q 002079 772 DEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRY 851 (971)
Q Consensus 772 dEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRk 851 (971)
+|+|+++.. +.++ +..|+|+... |+ .+++++||+||+|||
T Consensus 482 dE~G~~g~~--dp~~----R~~m~W~~~~----------------~~------------------~~l~~~~r~Li~lRk 521 (598)
T PRK10785 482 DEVGLDGGN--DPFC----RKPFPWDEAK----------------QD------------------GALLALYQRMIALRK 521 (598)
T ss_pred eeccccCCC--CCCc----cCCcCCCccc----------------Cc------------------hHHHHHHHHHHHHHh
Confidence 999998763 3333 4567785421 11 468999999999999
Q ss_pred cCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCC
Q 002079 852 SSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPA 923 (971)
Q Consensus 852 s~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~ 923 (971)
++|+|+.|+...+. . .+++++|.|..+. +.++|++|.+ +.+++.||.
T Consensus 522 ~~~aL~~G~~~~l~-------~----~~~v~af~R~~~~-------------~~vlVviN~s-~~~~v~lp~ 568 (598)
T PRK10785 522 KSQALRRGGCQVLY-------A----EGNVVVFARVLQQ-------------QRVLVAINRG-EACEVVLPA 568 (598)
T ss_pred hCcccccCcEEEEE-------e----CCCEEEEEEECCC-------------CEEEEEEECC-CCeEEeccc
Confidence 99999999864332 1 1469999997642 6899999999 778888884
No 19
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-52 Score=485.07 Aligned_cols=311 Identities=26% Similarity=0.431 Sum_probs=231.8
Q ss_pred CCccEEeCC---eeEEEEEcCCCCeEEEE-EecCCCCCCCceEEec--ccCCCEEEEEeCCCCCCceEEEEEEEecCCCc
Q 002079 209 PLGALYAEE---TVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL--KENDGVWSIKGPKSWEGCYYVYEVSVYHPSAL 282 (971)
Q Consensus 209 ~LGa~~~~~---~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M--~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g 282 (971)
.|||++.+. +++|+||||+|++|+|+ .|+++++ ..++| +.++|+|++++++...|..|+|+|... .|
T Consensus 25 ~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~----~~~~~~~~~~~G~we~~vp~~~~G~~Yky~l~~~---~g 97 (628)
T COG0296 25 KLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDG----RRMPMRDRKESGIWELFVPGAPPGTRYKYELIDP---SG 97 (628)
T ss_pred hhCcccccCCCCceEEEEECCCCCeEEEEeecCCccc----eecccccCCCCceEEEeccCCCCCCeEEEEEeCC---CC
Confidence 689988643 69999999999999999 5777765 56777 457899999999999999999999742 13
Q ss_pred cccceeecCccccccccC-CCccEEEeCCCCCCCCCcccccccCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccc
Q 002079 283 QIEKCYANDPYARGLSSD-GRRTLLVNLDSDTLKPEGWDKLVYEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYL 361 (971)
Q Consensus 283 ~~~~~~vtDPYa~~ls~n-g~~s~vvdl~~~~~~p~~W~~~~~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y~ 361 (971)
....++||||+..... ...|+|+|+.++.|.++.| .. ...-..+++++|||+||..|+. + ...|+|.
T Consensus 98 --~~~~~~DP~a~~~~~~p~~aS~v~~~~~y~W~d~~~-~~---~~~~~~~e~~vIYElHvGs~~~-~-----~~~~~~e 165 (628)
T COG0296 98 --QLRLKADPYARRQEVGPHTASQVVDLPDYEWQDERW-DR---AWRGRFWEPIVIYELHVGSFTP-D-----RFLGYFE 165 (628)
T ss_pred --ceeeccCchhhccCCCCCCcceecCCCCcccccccc-cc---cccCCCCCCceEEEEEeeeccC-C-----CCcCHHH
Confidence 2468999999987643 3589999997789999988 32 2222356899999999999986 1 2346666
Q ss_pred cccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhhh
Q 002079 362 AFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLE 441 (971)
Q Consensus 362 g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 441 (971)
+. +++|+||++||||||+||||.+++.
T Consensus 166 ~a-------~~llpYl~elG~T~IELMPv~e~p~---------------------------------------------- 192 (628)
T COG0296 166 LA-------IELLPYLKELGITHIELMPVAEHPG---------------------------------------------- 192 (628)
T ss_pred HH-------HHHhHHHHHhCCCEEEEcccccCCC----------------------------------------------
Confidence 55 4569999999999999999999974
Q ss_pred cCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCC
Q 002079 442 KLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF 521 (971)
Q Consensus 442 ~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~ 521 (971)
..+|||++..||||..+||| | ++||+||++||++||.||||+||||...++..
T Consensus 193 --------------------~~sWGYq~~g~yAp~sryGt-P------edfk~fVD~aH~~GIgViLD~V~~HF~~d~~~ 245 (628)
T COG0296 193 --------------------DRSWGYQGTGYYAPTSRYGT-P------EDFKALVDAAHQAGIGVILDWVPNHFPPDGNY 245 (628)
T ss_pred --------------------CCCCCCCcceeccccccCCC-H------HHHHHHHHHHHHcCCEEEEEecCCcCCCCcch
Confidence 26999999999999999999 4 48999999999999999999999999875432
Q ss_pred CCCCccCCCCCcceeecCC-CCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHH--------
Q 002079 522 DDNSVLDKVVPGYYLRRNS-DGFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKST-------- 592 (971)
Q Consensus 522 ~~~s~lDk~vP~YY~r~~~-~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~-------- 592 (971)
...+|.. + +|...++ .|. .+.+.-...+..+++||+||++++.||+++|||||||+|++..|....
T Consensus 246 --L~~fdg~-~-~~e~~~~~~~~-~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~ 320 (628)
T COG0296 246 --LARFDGT-F-LYEHEDPRRGE-HTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEW 320 (628)
T ss_pred --hhhcCCc-c-ccccCCccccc-CCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcc
Confidence 2334432 1 2221122 122 111111122334899999999999999999999999999998774331
Q ss_pred ---------HHHHHHHHHhhcccccCCCCCCcEEecccccc
Q 002079 593 ---------MMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (971)
Q Consensus 593 ---------~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~ 624 (971)
..++.+.++..+.-... ..|.++.|.|-|+.
T Consensus 321 ~~n~~ggr~n~~a~efl~~~n~~i~~-~~pg~~~iaeestd 360 (628)
T COG0296 321 VPNEYGGRENLEAAEFLRNLNSLIHE-EEPGAMTIAEESTD 360 (628)
T ss_pred cccccCCcccHHHHHHhhhhhhhhcc-cCCCceeeeeeccC
Confidence 12333444443322111 23677899999864
No 20
>PLN02960 alpha-amylase
Probab=100.00 E-value=2.8e-50 Score=481.93 Aligned_cols=270 Identities=19% Similarity=0.257 Sum_probs=203.6
Q ss_pred EEec-ccCCCEEEEEeCCCCCCceEEEEEEEecCCCccccceeecCcccccc--ccCCCccEEEeCCCCCCCCCcccccc
Q 002079 247 VVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGL--SSDGRRTLLVNLDSDTLKPEGWDKLV 323 (971)
Q Consensus 247 ~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~~~~vtDPYa~~l--s~ng~~s~vvdl~~~~~~p~~W~~~~ 323 (971)
-+.| +...|.|+..+++..+|.+|+|+|+... + +.++.||||+.+ ..++.++.+|+.+.....+..|...
T Consensus 316 ~~~~~k~~~gw~~~~ip~~~hG~~Yky~v~~~~---g---~~~~vdpyA~~~qp~~~~~~~~~v~~d~~~~~~y~W~~~- 388 (897)
T PLN02960 316 WEETRKGRKAWLKKYIPAIPHGSKYRVYFNTPD---G---PLERVPAWATYVLPDPDGKQWYAIHWEPPPEEAYKWKFE- 388 (897)
T ss_pred eeeeeecCCcEEEEEccCCCCCCEEEEEEEeCC---C---ceEECCCcceeEeecCCCccceEEEeCCCCCCCCCCCCC-
Confidence 4567 6788999999999999999999997521 2 246789999987 4556555566654332345788653
Q ss_pred cCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccc
Q 002079 324 YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENW 403 (971)
Q Consensus 324 ~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~ 403 (971)
.|. .+++++|||+||+.|+.. ...|+|.+++++ .|+||++|||||||||||+++..
T Consensus 389 --~p~--~~~~~vIYElHvg~~~~e------~~~gtf~~~~e~------~LdYLk~LGvt~IeLmPv~e~~~-------- 444 (897)
T PLN02960 389 --RPK--VPKSLRIYECHVGISGSE------PKISSFKEFTQK------VLPHVKKAGYNAIQLIGVQEHKD-------- 444 (897)
T ss_pred --CCC--CCCCcEEEEEecccccCC------CCCCCHHHHHHH------HHHHHHHcCCCEEEECCcccCCC--------
Confidence 343 458899999999988642 235999999864 47888888999999999998752
Q ss_pred cccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCC
Q 002079 404 KSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNP 483 (971)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~ 483 (971)
..+|||++.+||+|+++|||
T Consensus 445 ----------------------------------------------------------~~swGY~~~~yfa~~~~yGt-- 464 (897)
T PLN02960 445 ----------------------------------------------------------YSSVGYKVTNFFAVSSRFGT-- 464 (897)
T ss_pred ----------------------------------------------------------CCCCCCCcccCCCcccccCC--
Confidence 25899999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHH
Q 002079 484 NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERL 563 (971)
Q Consensus 484 ~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~ 563 (971)
.+|||+||++||++||+|||||||||++.+.++. ...+|.....||+. +..|... .+.+..+|..+++|+++
T Consensus 465 -----p~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~-L~~FDG~~~~Yf~~-~~~g~~~-~WG~~~fNy~~~eVr~f 536 (897)
T PLN02960 465 -----PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSNDCYFHS-GKRGHHK-RWGTRMFKYGDHEVLHF 536 (897)
T ss_pred -----HHHHHHHHHHHHHCCCEEEEEecccccCCccccc-hhhcCCCccceeec-CCCCccC-CCCCcccCCCCHHHHHH
Confidence 3599999999999999999999999998763321 23456543345553 3334332 23345679999999999
Q ss_pred HHHHHHHHHHhCCccEEEEecCCCCc-------------------------HHHHHHHHHHHHhhcccccCCCCCCcEEe
Q 002079 564 IIDDLLCWAVNYKVDGFRFDLMGHIM-------------------------KSTMMKAKHALHSLTKEIHGVDGSSIYIY 618 (971)
Q Consensus 564 i~Dsl~~W~~ey~IDGFRfDlm~~~~-------------------------~~~~~~~~~al~~i~p~~~~~~~~~~~l~ 618 (971)
|++++++|++||||||||||++..|. ..+++.+.+.|++.. |++++|
T Consensus 537 Llsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~--------P~vilI 608 (897)
T PLN02960 537 LLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLH--------PNIITI 608 (897)
T ss_pred HHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhC--------CCeEEE
Confidence 99999999999999999999886642 123445555555444 679999
Q ss_pred ccccc
Q 002079 619 GEGWD 623 (971)
Q Consensus 619 GEgWd 623 (971)
+|-+.
T Consensus 609 AEdss 613 (897)
T PLN02960 609 AEDAT 613 (897)
T ss_pred EECCC
Confidence 99763
No 21
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.3e-49 Score=471.25 Aligned_cols=439 Identities=15% Similarity=0.203 Sum_probs=286.5
Q ss_pred CCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCC
Q 002079 332 FSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (971)
Q Consensus 332 ~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~ 411 (971)
+++.||||+|+|.|+.++.. ..|+|.|++++ |+||++||||+|||+|+|+..+
T Consensus 2 ~~~~v~Y~i~~~~f~~~~~~----~~G~~~gi~~~-------l~yl~~lG~~~i~l~Pi~~~~~---------------- 54 (543)
T TIGR02403 2 WQKKVIYQIYPKSFYDSTGD----GTGDLRGIIEK-------LDYLKKLGVDYIWLNPFYVSPQ---------------- 54 (543)
T ss_pred cccCEEEEEEhHHHhcCCCC----CccCHHHHHHh-------HHHHHHcCCCEEEECCcccCCC----------------
Confidence 57889999999999875543 35999999765 8899999999999999998642
Q ss_pred ccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHH
Q 002079 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (971)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~E 491 (971)
..|||++.+|+.+++.|||. ++
T Consensus 55 ---------------------------------------------------~~~gY~~~d~~~id~~~Gt~-------~~ 76 (543)
T TIGR02403 55 ---------------------------------------------------KDNGYDVSDYYAINPLFGTM-------AD 76 (543)
T ss_pred ---------------------------------------------------CCCCCCccccCccCcccCCH-------HH
Confidence 36799999999999999994 58
Q ss_pred HHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCcc-CCCCCcceeecCCCCcccc------------------------
Q 002079 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL-DKVVPGYYLRRNSDGFIEH------------------------ 546 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~l-Dk~vP~YY~r~~~~G~~~~------------------------ 546 (971)
||+||++||++||+||||+|+|||+..++|+..+.- +.....||.+.+..|...+
T Consensus 77 ~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 156 (543)
T TIGR02403 77 FEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHL 156 (543)
T ss_pred HHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEec
Confidence 999999999999999999999999988877532211 1112356655432221000
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH-----------------------HHHHHHHHHHHh
Q 002079 547 -STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK-----------------------STMMKAKHALHS 602 (971)
Q Consensus 547 -stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~-----------------------~~~~~~~~al~~ 602 (971)
..+.+++|++||.|+++|++++++|++ +||||||||+++|+.+ ++|+++++.+++
T Consensus 157 f~~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 157 FDKTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred cCCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc
Confidence 013578999999999999999999995 7999999999999963 367777777665
Q ss_pred hcccccCCCCCCcEEecccccccccccccccc--cccccccCCCcccccchHHHHHHcCCCCCCCCcccccccccccCCC
Q 002079 603 LTKEIHGVDGSSIYIYGEGWDFGEVAKNGRGV--NASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPN 680 (971)
Q Consensus 603 i~p~~~~~~~~~~~l~GEgWd~gev~~~~~~~--~a~q~~~~gtgig~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n 680 (971)
. ++++++||.|.... .....+. ...++. +.||.. ..+.. +..+....
T Consensus 236 -~--------~~~~lvgE~~~~~~-~~~~~y~~~~~~~~d------~~~nf~--~~~~~-----------~~~~~~~~-- 284 (543)
T TIGR02403 236 -D--------NDSVTVGEMSSTTI-ENCIRYSNPENKELS------MVFTFH--HLKVD-----------YPNGEKWT-- 284 (543)
T ss_pred -c--------CCeEEEEEeCCCCH-HHHHhhhCCCCCeeC------eEEChh--hhhch-----------hccccccc--
Confidence 4 46999999996321 1000000 001111 124432 11111 00000000
Q ss_pred CCCCCChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCccccCCCCceeeeccccccccHHHHh
Q 002079 681 GHDHGTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVV 760 (971)
Q Consensus 681 ~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l 760 (971)
........+...+... .. .+.......++|++|||+.|+...+
T Consensus 285 -~~~~~~~~l~~~~~~~-----------~~-------------------------~~~~~~~~~~~fl~NHD~~R~~s~~ 327 (543)
T TIGR02403 285 -LAKFDFAKLKEIFSTW-----------QT-------------------------GMQAGGGWNALFWNNHDQPRAVSRF 327 (543)
T ss_pred -cCCCCHHHHHHHHHHH-----------HH-------------------------hccccCcceeeecCCCChhhHHHhc
Confidence 0000111111111100 00 0001122346899999998876433
Q ss_pred c-------------------CCCeeeEeccccccccCCCCC-----------CCC--------------------CCCCC
Q 002079 761 S-------------------LKGIPFFHCGDEILRSKSLDR-----------DSY--------------------NSGDW 790 (971)
Q Consensus 761 ~-------------------~~GiPfiy~GdEigrSks~d~-----------nsY--------------------~sgD~ 790 (971)
. +.|+||||||+|+||++.... +-| .+.+.
T Consensus 328 g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~ 407 (543)
T TIGR02403 328 GDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNS 407 (543)
T ss_pred CCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCC
Confidence 1 239999999999999874210 000 11234
Q ss_pred CccccCCCCCC-CCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceE
Q 002079 791 LNRIDFSYNSN-NWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERIC 869 (971)
Q Consensus 791 ~N~~dw~~~~n-~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~ 869 (971)
+.+|.|+...| +|..+ ..|..+.+.....+++.+.++..+++++||+||+|||++|+|+.|+++.+
T Consensus 408 RtPm~W~~~~~aGFs~~--------~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~----- 474 (543)
T TIGR02403 408 RTPMQWNNEKNAGFTTG--------KPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFL----- 474 (543)
T ss_pred ccccccCCCCCCCCCCC--------CCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEe-----
Confidence 67899986554 45433 24655544444455555666667899999999999999999999986432
Q ss_pred EecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCCCCCCceEeecceeccccccccCccee
Q 002079 870 FHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYE 949 (971)
Q Consensus 870 f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~~~~~~~~l~~~~~~~~d~~v~~~~~~ 949 (971)
... .++|++|.|..+. +.++||+|.+.++++++||.... .+.+ +. .+.... .
T Consensus 475 --~~~---~~~v~a~~R~~~~-------------~~~lVv~N~s~~~~~~~l~~~~~-~~~~--~~-~~~~~~------~ 526 (543)
T TIGR02403 475 --LPD---DPSVWAYTRTYKN-------------QKLLVINNFYGEEKTIELPLDLL-SGKI--LL-SNYEEA------E 526 (543)
T ss_pred --ecC---CCcEEEEEEEcCC-------------cEEEEEEECCCCCeEeeCCccCc-CceE--EE-ecCCCc------C
Confidence 111 1369999998642 67999999999999999986421 1221 11 110100 0
Q ss_pred ecCcEEEEcCceEEEEE
Q 002079 950 ANSGCFVIPPRTTSVFV 966 (971)
Q Consensus 950 ~~~g~~tVpa~S~aVfv 966 (971)
..++++|||+++.|+.
T Consensus 527 -~~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 527 -KDAKLELKPYEAIVLL 542 (543)
T ss_pred -CCCcEEECCceEEEEe
Confidence 1368999999999985
No 22
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=3.5e-49 Score=467.67 Aligned_cols=436 Identities=19% Similarity=0.239 Sum_probs=280.9
Q ss_pred CCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCC
Q 002079 332 FSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (971)
Q Consensus 332 ~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~ 411 (971)
++++||||++||+|+.++.. ..|+|.|++++ |+||++||||+|||+|+|+..+
T Consensus 3 ~~~~viYqi~~~~f~d~~~~----~~Gdl~gi~~~-------Ldyl~~LGv~~i~L~Pi~~~~~---------------- 55 (539)
T TIGR02456 3 YKDAVFYEVHVRSFFDSNGD----GIGDFPGLTSK-------LDYLKWLGVDALWLLPFFQSPL---------------- 55 (539)
T ss_pred cccceEEEEehhHhhcCCCC----CccCHHHHHHh-------HHHHHHCCCCEEEECCCcCCCC----------------
Confidence 47899999999999976643 36999999765 9999999999999999997542
Q ss_pred ccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHH
Q 002079 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (971)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~E 491 (971)
.+|||++.+|+++++.||+. ++
T Consensus 56 ---------------------------------------------------~~~gY~~~dy~~vd~~~Gt~-------~d 77 (539)
T TIGR02456 56 ---------------------------------------------------RDDGYDVSDYRAILPEFGTI-------DD 77 (539)
T ss_pred ---------------------------------------------------CCCCCCcccccccChhhCCH-------HH
Confidence 57999999999999999994 68
Q ss_pred HHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCc--cCCCCCcceeecCCCCccc------------c-----------
Q 002079 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSV--LDKVVPGYYLRRNSDGFIE------------H----------- 546 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~--lDk~vP~YY~r~~~~G~~~------------~----------- 546 (971)
||+||++||++||+||||+|+|||+..++|+..+. -+...++||++.+....+. +
T Consensus 78 f~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y 157 (539)
T TIGR02456 78 FKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYY 157 (539)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeE
Confidence 99999999999999999999999998887653221 1222346776543211110 0
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC-------------cHHHHHHHHHHHHhhcccccC
Q 002079 547 ----STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI-------------MKSTMMKAKHALHSLTKEIHG 609 (971)
Q Consensus 547 ----stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~-------------~~~~~~~~~~al~~i~p~~~~ 609 (971)
..+.+++|++||+|+++|++++++|++ +||||||||+++|+ ..++|+++++.+++..|
T Consensus 158 ~~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p---- 232 (539)
T TIGR02456 158 WHRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYP---- 232 (539)
T ss_pred EecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCC----
Confidence 124578999999999999999999995 89999999999887 35789999999998874
Q ss_pred CCCCCcEEecccccccccccccccccccccccCCCcc-cccchHHHHHHcCCCCCCCCcccccccccccCCCCCCCCChH
Q 002079 610 VDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGI-GSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKA 688 (971)
Q Consensus 610 ~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~gtgi-g~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~ 688 (971)
+++++||.|...+.. .... +.+ .+.+. ..||..++..+... +. .++..
T Consensus 233 ----~~~~iaE~~~~~~~~--~~y~-~~~---~~~~~d~~f~f~l~~~~~~~----------l~-----------~~~~~ 281 (539)
T TIGR02456 233 ----GRMLLAEANQWPEEV--VAYF-GDE---GDPECHMAFNFPVMPRIFMA----------LR-----------REDRS 281 (539)
T ss_pred ----CeEEEEEeCCCHHHH--HHhh-CCC---CCCeeeeEEChhhhhhhhcc----------cc-----------cCCHH
Confidence 689999986422110 0000 000 00011 24666555444320 00 11111
Q ss_pred HHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCccccCCCCceeeecccccccc-------------
Q 002079 689 VEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNET------------- 755 (971)
Q Consensus 689 ~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~t------------- 755 (971)
.+...+.. .. . + ..+....+|++|||..+
T Consensus 282 ~l~~~l~~------------~~------------------~-------~-~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~ 323 (539)
T TIGR02456 282 PIIDILKE------------TP------------------D-------I-PDSCQWCIFLRNHDELTLEMVTDEERDFMY 323 (539)
T ss_pred HHHHHHHH------------hh------------------h-------c-cCCCceeeecCCCCccCccccChhhhhhhh
Confidence 11111110 00 0 0 11223467888888732
Q ss_pred ------------------HHHH---------------hcCCCeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCC-
Q 002079 756 ------------------LFDV---------------VSLKGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSN- 801 (971)
Q Consensus 756 ------------------L~D~---------------l~~~GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n- 801 (971)
+... +.+.|+|+||||+|+|+++...- ....+-+.+|.|+...|
T Consensus 324 ~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~~--~~~~~~R~pm~W~~~~~~ 401 (539)
T TIGR02456 324 AAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIWL--GDRNGVRTPMQWSPDRNA 401 (539)
T ss_pred hhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCcc--CCCcCccCCcCcCCCCCC
Confidence 2211 22349999999999999763210 01112245789986433
Q ss_pred CCCCCCCCCCcCCCCccccccCCCCC-------CCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceEEecCC
Q 002079 802 NWGVGLPPKEKNEKNWPLIRPRLADP-------SFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTG 874 (971)
Q Consensus 802 ~w~~GlP~~~~n~~~w~~i~~~l~~~-------~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g 874 (971)
+|..+-| |..+.|...++ +++.+.++..+++++||+||+||+++|+|+.|++..+. .+
T Consensus 402 gfs~~~~--------~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~-------~~ 466 (539)
T TIGR02456 402 GFSSADP--------GQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLP-------TG 466 (539)
T ss_pred CCCCCCC--------cccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEe-------cC
Confidence 4443322 11111111111 12222233357899999999999999999999854322 11
Q ss_pred CCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCCCC--CCceEeecceeccccccccCcceeecC
Q 002079 875 PSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQ--GKNLQLHPIQVKSVDEIVKNSSYEANS 952 (971)
Q Consensus 875 ~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~~~--~~~~~l~~~~~~~~d~~v~~~~~~~~~ 952 (971)
.+++++|.|.... +.++||+|.+.++++++|+... +..+ ..+ .+.+.+.. .....
T Consensus 467 ---~~~v~~f~R~~~~-------------~~vlVv~N~s~~~~~v~l~~~~~~~~~~--~dl--~~~~~~~~---~~~~~ 523 (539)
T TIGR02456 467 ---NRRVLAFLREYEG-------------ERVLCVFNFSRNPQAVELDLSEFAGRVP--VEL--IGGAPFPP---VGGDG 523 (539)
T ss_pred ---CCCEEEEEEEcCC-------------cEEEEEEeCCCCCEEeeccccccccCcc--eec--ccCCcccc---ccCCc
Confidence 1359999998642 6899999999999999887532 2211 111 11111110 01012
Q ss_pred cEEEEcCceEEEEE
Q 002079 953 GCFVIPPRTTSVFV 966 (971)
Q Consensus 953 g~~tVpa~S~aVfv 966 (971)
.++||||+++.+|.
T Consensus 524 ~~~~l~p~~~~~~~ 537 (539)
T TIGR02456 524 YLLTLGPHGFYWFR 537 (539)
T ss_pred ceEEECCceEEEEE
Confidence 38999999999986
No 23
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=2.1e-48 Score=460.85 Aligned_cols=448 Identities=16% Similarity=0.258 Sum_probs=289.0
Q ss_pred CCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCC
Q 002079 331 SFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLP 410 (971)
Q Consensus 331 ~~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~ 410 (971)
.+++.||||+++|+|..++.+ ..|++.|++++ |+||++||||+|||+|+++...
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~~----~~Gdl~gi~~~-------ldyl~~lGv~~i~l~P~~~~~~--------------- 60 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTGS----GTGDLRGVTQR-------LDYLQKLGVDAIWLTPFYVSPQ--------------- 60 (551)
T ss_pred hhhcCeEEEEEchHhhcCCCC----CCcCHHHHHHh-------hHHHHhCCCCEEEECCCCCCCC---------------
Confidence 357899999999999876543 35999999765 9999999999999999996532
Q ss_pred CccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhH
Q 002079 411 GLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTI 490 (971)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~ 490 (971)
.+|||++.+|+.++++|||. +
T Consensus 61 ----------------------------------------------------~~~gY~~~d~~~id~~~Gt~-------~ 81 (551)
T PRK10933 61 ----------------------------------------------------VDNGYDVANYTAIDPTYGTL-------D 81 (551)
T ss_pred ----------------------------------------------------CCCCCCcccCCCcCcccCCH-------H
Confidence 46899999999999999994 5
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCC--cceeecCC------CCccc--------c--------
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVP--GYYLRRNS------DGFIE--------H-------- 546 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP--~YY~r~~~------~G~~~--------~-------- 546 (971)
+||+||++||++||+||||+|+|||+..++|+..+ .++..| .||.+.+. ..... .
T Consensus 82 d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~-~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y 160 (551)
T PRK10933 82 DFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREA-LNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY 160 (551)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhh-cCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceE
Confidence 89999999999999999999999999988886543 333333 45544321 00000 0
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHH--HH--------------HHHHHHHHhhccc
Q 002079 547 ----STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKS--TM--------------MKAKHALHSLTKE 606 (971)
Q Consensus 547 ----stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~--~~--------------~~~~~al~~i~p~ 606 (971)
....+++|++||+|+++|++++++|+ ++||||||||+++|+++. ++ .++.+.++++.+.
T Consensus 161 ~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (551)
T PRK10933 161 LHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRD 239 (551)
T ss_pred eecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHH
Confidence 01356999999999999999999999 699999999999999863 11 1233334444322
Q ss_pred ccCCCCCCcEEecccccccc--cccccccccccccccCCCcccccchHHHHHHcCCCCCCCCcccccccccccCCCCCCC
Q 002079 607 IHGVDGSSIYIYGEGWDFGE--VAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDH 684 (971)
Q Consensus 607 ~~~~~~~~~~l~GEgWd~ge--v~~~~~~~~a~q~~~~gtgig~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~ 684 (971)
. ...++++++||.|.... +.... ...+.+++ ..||.. ..+.. +..|.... ...
T Consensus 240 ~--~~~~~~~~vgE~~~~~~~~~~~y~-~~~~~~~~------~~fnf~--~~~~~-----------~~~~~~~~---~~~ 294 (551)
T PRK10933 240 V--FTPRGLMTVGEMSSTSLEHCQRYA-ALTGSELS------MTFNFH--HLKVD-----------YPNGEKWT---LAK 294 (551)
T ss_pred h--hcccCcEEEEeecCCCHHHHHHhh-cccCCeee------eEecHH--Hhhhh-----------hccCCccc---ccc
Confidence 1 11245899999995321 11000 00111111 234432 11111 11110000 000
Q ss_pred CChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCccccCCCCceeeeccccccccHHHHh----
Q 002079 685 GTKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVV---- 760 (971)
Q Consensus 685 g~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l---- 760 (971)
-....++..+.+... + + .......+|++|||..|+...+
T Consensus 295 ~~~~~~~~~~~~~~~----~--------------------------------~-~~~~~~~~fl~NHD~~R~~sr~g~~~ 337 (551)
T PRK10933 295 PDFVALKTLFRHWQQ----G--------------------------------M-HNVAWNALFWCNHDQPRIVSRFGDEG 337 (551)
T ss_pred cCHHHHHHHHHHHHH----h--------------------------------h-cccCeeccccCCCCcccHHHHcCCch
Confidence 001111111111000 0 0 0112346799999998876543
Q ss_pred ---------------cCCCeeeEeccccccccCCCC-----------CCCC-------------------CCC-CCCccc
Q 002079 761 ---------------SLKGIPFFHCGDEILRSKSLD-----------RDSY-------------------NSG-DWLNRI 794 (971)
Q Consensus 761 ---------------~~~GiPfiy~GdEigrSks~d-----------~nsY-------------------~sg-D~~N~~ 794 (971)
.+.|+||||||+|+||++..- .+-| .+. ..+.+|
T Consensus 338 ~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPM 417 (551)
T PRK10933 338 EYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPM 417 (551)
T ss_pred hHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCcccc
Confidence 233999999999999987310 0001 011 136789
Q ss_pred cCCCCCC-CCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceEEecC
Q 002079 795 DFSYNSN-NWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNT 873 (971)
Q Consensus 795 dw~~~~n-~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~ 873 (971)
.|+...| +|..+ ..|..+.+.....+++.+.++..+++++||+||+|||++|+|+.|++..+.. .
T Consensus 418 qW~~~~~~GFs~~--------~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~------~ 483 (551)
T PRK10933 418 QWDNGDNAGFTQG--------EPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLP------N 483 (551)
T ss_pred ccCCCCCCCCCCC--------CCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEecc------C
Confidence 9987654 55443 2476666655556666666677789999999999999999999998653321 1
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCCCCCCceEeecceeccccccccCcceeecCc
Q 002079 874 GPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSG 953 (971)
Q Consensus 874 g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~~~~~~~~l~~~~~~~~d~~v~~~~~~~~~g 953 (971)
.++|++|.|..+. +.++||+|.+.++++++++.+.+ .++. +.....+. . ...+
T Consensus 484 ----~~~v~af~R~~~~-------------~~~lvv~N~s~~~~~~~~~~~~~-~~~~--~l~~~~~~------~-~~~~ 536 (551)
T PRK10933 484 ----HPSLWCYRREWQG-------------QTLLVIANLSREPQPWQPGQMRG-NWQL--LMHNYEEA------S-PQPC 536 (551)
T ss_pred ----CCcEEEEEEEcCC-------------cEEEEEEECCCCCeeeecCcccC-CceE--EeecCccc------c-CCCC
Confidence 1359999998642 68999999999999999874322 2332 11111010 0 1124
Q ss_pred EEEEcCceEEEEEEc
Q 002079 954 CFVIPPRTTSVFVEP 968 (971)
Q Consensus 954 ~~tVpa~S~aVfv~~ 968 (971)
.++|+|++..|+.++
T Consensus 537 ~~~L~p~~~~~~~~~ 551 (551)
T PRK10933 537 AMTLRPFEAVWWLQK 551 (551)
T ss_pred cEEECCCeEEEEEeC
Confidence 689999999999864
No 24
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.6e-45 Score=441.79 Aligned_cols=385 Identities=17% Similarity=0.283 Sum_probs=243.9
Q ss_pred CCCCCceEEEEEcccccccCCCCCC--------------CCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCC
Q 002079 330 LSFSDISIYELHVRDFSVSDHTVHP--------------DFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAG 395 (971)
Q Consensus 330 ~~~~d~vIYElHVrdFs~~d~s~~~--------------~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~ 395 (971)
..|.+.+||++.+++|..++++... -+.|+++|++++ |+||++||||+|||+|+|+...
T Consensus 185 ~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~k-------Ldyl~~LGv~aIwlsPi~~~~~ 257 (683)
T PRK09505 185 FDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEK-------LDYLQQLGVNALWISSPLEQIH 257 (683)
T ss_pred hhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHh-------hHHHHHcCCCEEEeCccccccc
Confidence 3678889999999999987753211 134778877654 9999999999999999998642
Q ss_pred CCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCc
Q 002079 396 VDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVP 475 (971)
Q Consensus 396 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ap 475 (971)
....... -..++ ...||||++.+|+.+
T Consensus 258 ~~~~~g~-------------------------------------~g~~~----------------~~~yhgY~~~D~~~i 284 (683)
T PRK09505 258 GWVGGGT-------------------------------------KGDFP----------------HYAYHGYYTLDWTKL 284 (683)
T ss_pred ccccccc-------------------------------------ccCCC----------------cCCCCCCCccccccC
Confidence 1000000 00000 025899999999999
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCC-C----CCcc------CCCCCc-c---------
Q 002079 476 KGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFD-D----NSVL------DKVVPG-Y--------- 534 (971)
Q Consensus 476 e~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~-~----~s~l------Dk~vP~-Y--------- 534 (971)
+++||+ .+|||+||++||++||+||||+|+||++.....+ . ..++ .+..|. |
T Consensus 285 d~~~Gt-------~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~ 357 (683)
T PRK09505 285 DANMGT-------EADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQ 357 (683)
T ss_pred CCCCCC-------HHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccccc
Confidence 999999 4689999999999999999999999998432100 0 0000 000111 1
Q ss_pred -eeecC------CCCccccC-------------------------CCCCCCCCC-----------------------CHH
Q 002079 535 -YLRRN------SDGFIEHS-------------------------TCMNNTASE-----------------------HYM 559 (971)
Q Consensus 535 -Y~r~~------~~G~~~~s-------------------------tc~~d~a~e-----------------------~~m 559 (971)
||..+ ....++.+ ...++++++ |+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~ 437 (683)
T PRK09505 358 NWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYT 437 (683)
T ss_pred cccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHH
Confidence 11110 00011110 123444554 569
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHH-------HhhcccccCCCCCCcEEecccccccccccccc
Q 002079 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHAL-------HSLTKEIHGVDGSSIYIYGEGWDFGEVAKNGR 632 (971)
Q Consensus 560 v~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al-------~~i~p~~~~~~~~~~~l~GEgWd~gev~~~~~ 632 (971)
|+++|++++++|+++|||||||+|++.|+++++|+++++++ ++.+|++. .+.++++++||.|..+... ..
T Consensus 438 Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~-~~~~~~~~vGEvw~~~~~~--~~ 514 (683)
T PRK09505 438 PRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKA-LDDAPFWMTGEAWGHGVMK--SD 514 (683)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccc-cccCCeEEEEEecCCchhh--HH
Confidence 99999999999999999999999999999999999887766 34444311 1235699999999744311 00
Q ss_pred cccccccccCCCcc-cccchHHHHHHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHHhhhcccchh
Q 002079 633 GVNASQFNLSGTGI-GSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQVGLAANLRD 711 (971)
Q Consensus 633 ~~~a~q~~~~gtgi-g~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~~glaGnl~~ 711 (971)
..+ .++ +.||..+++++... + ..+.. +......
T Consensus 515 ---y~~-----~~fDsv~NF~~~~~~~~~----------~--------------------~~~~~--------l~~~~~~ 548 (683)
T PRK09505 515 ---YYR-----HGFDAMINFDYQEQAAKA----------V--------------------DCLAQ--------MDPTYQQ 548 (683)
T ss_pred ---HHh-----hcCccccCchHHHHHHHH----------H--------------------HHHHH--------HHHHHHH
Confidence 001 111 34555555544320 0 00000 0000000
Q ss_pred hhccccCCcccccccccccCCCCccccCCCCceeeeccccccccHHHHhc--------------CCCeeeEecccccccc
Q 002079 712 FQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVVS--------------LKGIPFFHCGDEILRS 777 (971)
Q Consensus 712 ~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l~--------------~~GiPfiy~GdEigrS 777 (971)
+. . . ..+...++|++|||+.|+..... ..|+|+||||+|+||+
T Consensus 549 ~~------------~--~---------~~~~~~l~FLdNHDt~Rf~s~~~~~~~~klAaall~tlpGiP~IYYGdEiGm~ 605 (683)
T PRK09505 549 MA------------E--K---------LQDFNVLSYLSSHDTRLFFEGGQSYAKQRRAAELLLLAPGAVQIYYGDESARP 605 (683)
T ss_pred Hh------------h--h---------cCccceeecccCCChhhhhhhcCchHHHHHHHHHHHhCCCCcEEEechhhCcc
Confidence 00 0 0 02234589999999998765332 2399999999999997
Q ss_pred CCCC-CCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCccc
Q 002079 778 KSLD-RDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLF 856 (971)
Q Consensus 778 ks~d-~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~paf 856 (971)
+... .|.+ .+.+..|+|.... .+..+++++||+|++||+++|+|
T Consensus 606 gg~~g~DP~--~~~R~~M~W~~~~---------------------------------~~~~~Ll~~~kkLi~LRk~~pAL 650 (683)
T PRK09505 606 FGPTGSDPL--QGTRSDMNWQEVS---------------------------------GKSAALLAHWQKLGQFRARHPAI 650 (683)
T ss_pred CCCCCCCCc--ccccccCCccccc---------------------------------cchHHHHHHHHHHHHHHhhCHHh
Confidence 6421 1222 1223456665310 01146899999999999999999
Q ss_pred ccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCC
Q 002079 857 RLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSS 913 (971)
Q Consensus 857 rlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s 913 (971)
+.|+.+.+ . .+++++|.|..+. +.++||+|..
T Consensus 651 ~~G~~~~l-------~-----~~~~~aF~R~~~~-------------d~vlVv~~~~ 682 (683)
T PRK09505 651 GAGKQTTL-------S-----LKQYYAFVREHGD-------------DKVMVVWAGQ 682 (683)
T ss_pred hCCceEEe-------c-----cCCEEEEEEEeCC-------------CEEEEEEeCC
Confidence 99986432 1 1358999998752 7899999975
No 25
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1e-41 Score=398.87 Aligned_cols=368 Identities=18% Similarity=0.238 Sum_probs=234.6
Q ss_pred cccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchh
Q 002079 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (971)
Q Consensus 358 G~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (971)
..|.++++ +|+||++||||+|||+|+|+..+
T Consensus 19 ~~~~~I~~-------kldyl~~LGvtaIwl~P~~~~~~------------------------------------------ 49 (479)
T PRK09441 19 KLWNRLAE-------RAPELAEAGITAVWLPPAYKGTS------------------------------------------ 49 (479)
T ss_pred cHHHHHHH-------HHHHHHHcCCCEEEeCCCccCCC------------------------------------------
Confidence 35666755 59999999999999999998753
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCC---------CcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEE
Q 002079 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWG---------VPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVL 508 (971)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~---------ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIl 508 (971)
...+|||+|.+|| .++++|||. +|||+||++||++||+|||
T Consensus 50 -----------------------~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~-------~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 50 -----------------------GGYDVGYGVYDLFDLGEFDQKGTVRTKYGTK-------EELLNAIDALHENGIKVYA 99 (479)
T ss_pred -----------------------CCCCCCCCeecccccccccccCCcCcCcCCH-------HHHHHHHHHHHHCCCEEEE
Confidence 1258999999999 799999995 5899999999999999999
Q ss_pred EEeeccccCCC--CCCCC------------------CccCC-CCC-----------cceeecCC--------CCcc----
Q 002079 509 DVVYNHLQGSG--PFDDN------------------SVLDK-VVP-----------GYYLRRNS--------DGFI---- 544 (971)
Q Consensus 509 DvVyNHt~~~g--~~~~~------------------s~lDk-~vP-----------~YY~r~~~--------~G~~---- 544 (971)
|+|+||++... +|... ..+.. ..| .||+.... .+.+
T Consensus 100 D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (479)
T PRK09441 100 DVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVG 179 (479)
T ss_pred EECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecC
Confidence 99999998532 22210 00000 001 12222110 0000
Q ss_pred --ccC-------------CCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccC
Q 002079 545 --EHS-------------TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHG 609 (971)
Q Consensus 545 --~~s-------------tc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~ 609 (971)
..+ ...+++|++||.|+++|++.+++|+++|||||||+|+++|++.++|.++++++++..+
T Consensus 180 ~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~~~~~~~~~~~~~---- 255 (479)
T PRK09441 180 DGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFIKEWIEHVREVAG---- 255 (479)
T ss_pred CCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHHHHHHHHHHHhcC----
Confidence 000 1256999999999999999999999999999999999999999999999999987652
Q ss_pred CCCCCcEEecccccccccccccccccccccccCCCcccccchHH----HHHHcCCCCCCCCcccccccccccCCCCCCCC
Q 002079 610 VDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRI----RDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHG 685 (971)
Q Consensus 610 ~~~~~~~l~GEgWd~gev~~~~~~~~a~q~~~~gtgig~fnDrl----Rdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g 685 (971)
++++++||.|+..... ...++... +...+.|+..+ ++++.++..
T Consensus 256 ---~~~~~vGE~~~~~~~~-----~~~y~~~~-~~~~~~~Df~~~~~l~~~~~~~~~----------------------- 303 (479)
T PRK09441 256 ---KDLFIVGEYWSHDVDK-----LQDYLEQV-EGKTDLFDVPLHYNFHEASKQGRD----------------------- 303 (479)
T ss_pred ---CCeEEEEeecCCChHH-----HHHHHHhc-CCCceEecHHHHHHHHHHHhcCCc-----------------------
Confidence 4699999999754210 00000000 00112344333 343332100
Q ss_pred ChHHHHHHHHHHHhhHHhhhcccchhhhccccCCcccccccccccCCCCccccCCCCceeeeccccccccHHH-------
Q 002079 686 TKAVEEQMLAAAKDHIQVGLAANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFD------- 758 (971)
Q Consensus 686 ~~~~~~~~l~~~~d~i~~glaGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D------- 758 (971)
..|..+. .... ....|..++|||+|||+.|+..
T Consensus 304 ---------------------~~l~~~~----------~~~~---------~~~~~~~~~~FldNHD~~R~~~~~~~~~~ 343 (479)
T PRK09441 304 ---------------------YDMRNIF----------DGTL---------VEADPFHAVTFVDNHDTQPGQALESPVEP 343 (479)
T ss_pred ---------------------cchHhhh----------Ccch---------hhcCcccceeeeccccCCCcccccccccc
Confidence 0000000 0000 1135667799999999988642
Q ss_pred ---------HhcCC-CeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCC
Q 002079 759 ---------VVSLK-GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPS 828 (971)
Q Consensus 759 ---------~l~~~-GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~ 828 (971)
++.+. |||+||||+|+++.+..+ +
T Consensus 344 ~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~----~------------------------------------------ 377 (479)
T PRK09441 344 WFKPLAYALILLREEGYPCVFYGDYYGASGYYI----D------------------------------------------ 377 (479)
T ss_pred cchHHHHHHHHhCCCCceeeEeccccCCCCCcc----c------------------------------------------
Confidence 12345 999999999999864311 0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEE
Q 002079 829 FKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVV 908 (971)
Q Consensus 829 ~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivV 908 (971)
..+++++++|++||++++ .|+...+ .. .+++++|.|..... .+.++|
T Consensus 378 --------~~l~~~i~~Li~lRk~~~---~G~~~~~------~~-----~~~~~~~~R~~~~~-----------~~~vvv 424 (479)
T PRK09441 378 --------MPFKEKLDKLLLARKNFA---YGEQTDY------FD-----HPNCIGWTRSGDEE-----------NPGLAV 424 (479)
T ss_pred --------chHHHHHHHHHHHHHHhC---CCCeeEe------ec-----CCCEEEEEEecCCC-----------CccEEE
Confidence 136889999999999854 4554322 11 25699999976421 146888
Q ss_pred EEeCCC-CcEEEEcCCC-CCCceEeecceeccccccccCcceeecCc--EEEEcCceEEEEE
Q 002079 909 IFNSSP-TEVSFVSPAL-QGKNLQLHPIQVKSVDEIVKNSSYEANSG--CFVIPPRTTSVFV 966 (971)
Q Consensus 909 v~N~s~-~~~~~~lp~~-~~~~~~l~~~~~~~~d~~v~~~~~~~~~g--~~tVpa~S~aVfv 966 (971)
|+|.+. ...+++++.. .+..+. .+.......++ ...+| +++||++|++|++
T Consensus 425 vinn~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~-----~~~~G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 425 VISNGDAGEKTMEVGENYAGKTWR--DYTGNRQETVT-----IDEDGWGTFPVNGGSVSVWV 479 (479)
T ss_pred EEECCCCCcEEEEeCccCCCCEeE--hhhCCCCCeEE-----ECCCCeEEEEECCceEEEeC
Confidence 887765 4445777542 232222 11111111111 11223 7999999999985
No 26
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=100.00 E-value=1.8e-42 Score=347.60 Aligned_cols=168 Identities=57% Similarity=1.011 Sum_probs=138.4
Q ss_pred CCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHHHHHHHHHhcCcccccCchhhhccceEEecCCCC
Q 002079 797 SYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPS 876 (971)
Q Consensus 797 ~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~ 876 (971)
++++||||+|||+++||+++|+.|+++|+|++++|++++|..+.++|++||+||++||+|||+++++|++||.|+|+|++
T Consensus 1 t~q~NnwgvGLP~~~kn~~~W~~i~~ll~d~~~kP~~~~I~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~ 80 (168)
T PF11852_consen 1 TYQDNNWGVGLPPADKNGDNWPLIRPLLADPALKPSPADIAAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPD 80 (168)
T ss_dssp TSS--S-SSS---HHHHGGGHHHHHHHHCTCCGS--HHHHHHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT
T ss_pred CCccCCCCcCCCcccccccchhhhhhhccCCccCCCHHHHHHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCCCCCCceEeecceeccccccccCcceeecCcEEE
Q 002079 877 AVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFV 956 (971)
Q Consensus 877 ~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~~~~~~~~l~~~~~~~~d~~v~~~~~~~~~g~~t 956 (971)
|+||||+|+|+|+.+. .+|+|++++.||||||++++++++++|.+.| |+||++|..+.|++++.+++..++|+||
T Consensus 81 q~pGvIvM~idDg~~~---~~dlD~~~~~iVVvfNat~~~~t~~~~~~~g--~~Lhpvq~~~~D~~v~~a~~~~~~G~~t 155 (168)
T PF11852_consen 81 QTPGVIVMSIDDGAGV---GADLDPNYDGIVVVFNATPEEQTFTVPGLAG--FQLHPVQAESSDPVVKQASFDAANGTFT 155 (168)
T ss_dssp --TTEEEEEEE-SCSS---SS-S-SSEEEEEEEEE-SSS-EEEETGGGSS---EE-HHHHTGSGTTGGGTEEETTTTEEE
T ss_pred CCCcEEEEEecCCCcc---ccccCCccCeEEEEEeCCCCeEEEEcCCcCc--eEechHHhcccchhhhceeEecCCCeEE
Confidence 9999999999997542 4799999999999999999999999998765 9999999999999999999988889999
Q ss_pred EcCceEEEEEEcc
Q 002079 957 IPPRTTSVFVEPR 969 (971)
Q Consensus 957 Vpa~S~aVfv~~~ 969 (971)
|||+|+||||++|
T Consensus 156 VPa~T~aVFv~~q 168 (168)
T PF11852_consen 156 VPARTVAVFVQPQ 168 (168)
T ss_dssp E-TTEEEEEEEE-
T ss_pred ECCceEEEEEecC
Confidence 9999999999987
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=2.6e-39 Score=351.13 Aligned_cols=178 Identities=26% Similarity=0.440 Sum_probs=145.0
Q ss_pred cccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchh
Q 002079 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (971)
Q Consensus 358 G~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (971)
|+|.|+++| |+||++||||+|||+||++...
T Consensus 1 Gd~~gi~~k-------Ldyl~~lGv~~I~l~Pi~~~~~------------------------------------------ 31 (316)
T PF00128_consen 1 GDFRGIIDK-------LDYLKDLGVNAIWLSPIFESPN------------------------------------------ 31 (316)
T ss_dssp SSHHHHHHT-------HHHHHHHTESEEEESS-EESSS------------------------------------------
T ss_pred CCHHHHHHh-------hHHHHHcCCCceeccccccccc------------------------------------------
Confidence 788888665 9999999999999999998431
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccC
Q 002079 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (971)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~ 517 (971)
.+|||+|.+|++++++||| .+|||+||++||++||+||||+|+||++.
T Consensus 32 -------------------------~~~gY~~~d~~~vd~~~Gt-------~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 32 -------------------------GYHGYDPSDYYAVDPRFGT-------MEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp -------------------------STTTTSESEEEEESTTTBH-------HHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred -------------------------ccccccceeeeccccccch-------hhhhhhhhhccccccceEEEeeecccccc
Confidence 5899999999999999999 46999999999999999999999999998
Q ss_pred CCCCCCC--CccCCCCCcceeecCC----CCcc---------c---------cCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 002079 518 SGPFDDN--SVLDKVVPGYYLRRNS----DGFI---------E---------HSTCMNNTASEHYMVERLIIDDLLCWAV 573 (971)
Q Consensus 518 ~g~~~~~--s~lDk~vP~YY~r~~~----~G~~---------~---------~stc~~d~a~e~~mv~k~i~Dsl~~W~~ 573 (971)
.++|... ...+...+.||.+.+. .+.. . ....++++|++|++|+++|++++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~ 159 (316)
T PF00128_consen 80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIE 159 (316)
T ss_dssp TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhh
Confidence 8776321 1123334567765421 1111 1 1234568899999999999999999996
Q ss_pred hCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCCCCcEEeccccccc
Q 002079 574 NYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFG 625 (971)
Q Consensus 574 ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~g 625 (971)
++|||||||+++++++++|.++++++++.. ++++++||.|...
T Consensus 160 -~giDGfR~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~E~~~~~ 202 (316)
T PF00128_consen 160 -EGIDGFRLDAAKHIPKEFWKEFRDEVKEEK--------PDFFLIGEVWGGD 202 (316)
T ss_dssp -TTESEEEETTGGGSSHHHHHHHHHHHHHHH--------TTSEEEEEESSSS
T ss_pred -ceEeEEEEccccccchhhHHHHhhhhhhhc--------cccceeeeeccCC
Confidence 569999999999999999999999999987 4699999999754
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=4.2e-36 Score=345.42 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=130.7
Q ss_pred CcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccch
Q 002079 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (971)
Q Consensus 357 rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (971)
.|.|.++++ +|+||++||||+|||+|+++..
T Consensus 40 gg~~~~i~~-------kldyL~~LGvtaIWL~P~~~s~------------------------------------------ 70 (428)
T PLN00196 40 GGWYNFLMG-------KVDDIAAAGITHVWLPPPSHSV------------------------------------------ 70 (428)
T ss_pred CcCHHHHHH-------HHHHHHHcCCCEEEeCCCCCCC------------------------------------------
Confidence 477888765 5999999999999999998642
Q ss_pred hhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcC-CCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccc
Q 002079 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPK-GSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHL 515 (971)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape-~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt 515 (971)
.+|||+|.+||.++ ++|||. +|||+||++||++||+||+|+|+||+
T Consensus 71 --------------------------s~hGY~~~D~y~ld~~~fGt~-------~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 71 --------------------------SEQGYMPGRLYDLDASKYGNE-------AQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred --------------------------CCCCCCccccCCCCcccCCCH-------HHHHHHHHHHHHCCCEEEEEECccCc
Confidence 37899999999998 589995 58999999999999999999999999
Q ss_pred cCCCCCCCC--CccCC---C-CCcceee-c--------CCCCcccc---CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 002079 516 QGSGPFDDN--SVLDK---V-VPGYYLR-R--------NSDGFIEH---STCMNNTASEHYMVERLIIDDLLCWAVNYKV 577 (971)
Q Consensus 516 ~~~g~~~~~--s~lDk---~-vP~YY~r-~--------~~~G~~~~---stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~I 577 (971)
+..+..... ..+.. . ...||+. . +..+.+.. ....+|+|++||+|+++|++.+++|++++||
T Consensus 118 ~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~Gi 197 (428)
T PLN00196 118 TAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGF 197 (428)
T ss_pred ccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCC
Confidence 864321100 00111 0 0122211 0 01112111 1246799999999999999999988889999
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCCCCcEEecccccc
Q 002079 578 DGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (971)
Q Consensus 578 DGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~ 624 (971)
||||||+++|++.+++++. +++.. ..+++||.|+.
T Consensus 198 DG~RlD~ak~~~~~f~~~~---v~~~~---------p~f~VGE~W~~ 232 (428)
T PLN00196 198 DAWRLDFAKGYSAEVAKVY---IDGTE---------PSFAVAEIWTS 232 (428)
T ss_pred CEEEeehhhhCCHHHHHHH---HHccC---------CcEEEEEEecc
Confidence 9999999999999987643 44443 26899999974
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=4.4e-35 Score=333.75 Aligned_cols=167 Identities=19% Similarity=0.229 Sum_probs=125.4
Q ss_pred hhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHH
Q 002079 371 VSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQ 450 (971)
Q Consensus 371 i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~ 450 (971)
+++|+||++||||+|||+|+++..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~-------------------------------------------------------- 55 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSL-------------------------------------------------------- 55 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCC--------------------------------------------------------
Confidence 456999999999999999999753
Q ss_pred HHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCC--CCCCccC
Q 002079 451 QAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF--DDNSVLD 528 (971)
Q Consensus 451 q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~--~~~s~lD 528 (971)
.+|||+|.+||.++++|||. +|||+||++||++||+||+|+|+||++...+. ...+.++
T Consensus 56 ------------~~~GY~~~d~y~~~~~~Gt~-------~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~ 116 (401)
T PLN02361 56 ------------APEGYLPQNLYSLNSAYGSE-------HLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYD 116 (401)
T ss_pred ------------CCCCCCcccccccCcccCCH-------HHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCC
Confidence 36899999999999999994 58999999999999999999999999643211 0111111
Q ss_pred CCCCcce-----eecCCCCcc---ccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHH
Q 002079 529 KVVPGYY-----LRRNSDGFI---EHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHAL 600 (971)
Q Consensus 529 k~vP~YY-----~r~~~~G~~---~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al 600 (971)
.....|. ......+.. .+....+|+|++||.|++.|++.+++|++++||||||||+++|++.++++++.+++
T Consensus 117 g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~ 196 (401)
T PLN02361 117 GIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYIEAA 196 (401)
T ss_pred CCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHhh
Confidence 1100111 000000111 11234689999999999999999986666799999999999999999998876542
Q ss_pred HhhcccccCCCCCCcEEecccccc
Q 002079 601 HSLTKEIHGVDGSSIYIYGEGWDF 624 (971)
Q Consensus 601 ~~i~p~~~~~~~~~~~l~GEgWd~ 624 (971)
. .++++||.|+.
T Consensus 197 ---~---------p~f~VGE~w~~ 208 (401)
T PLN02361 197 ---K---------PLFSVGEYWDS 208 (401)
T ss_pred ---C---------CeEEEEEEecC
Confidence 2 27999999975
No 30
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=2.6e-33 Score=330.75 Aligned_cols=236 Identities=20% Similarity=0.265 Sum_probs=165.4
Q ss_pred ec-ccCCCEEEEEeCCCCCCceEEEEEEEecCCCccccceeecCccccccccCCC---c-cEEEeCCCCCCCCCcccccc
Q 002079 249 QL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGR---R-TLLVNLDSDTLKPEGWDKLV 323 (971)
Q Consensus 249 ~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~~~~vtDPYa~~ls~ng~---~-s~vvdl~~~~~~p~~W~~~~ 323 (971)
.| +...|.|...++...+|..|+..|.. +. | + .....+|++-+..+.. + .++-|+.. -....|..
T Consensus 323 ~~~~~~~~w~~~~~~~i~H~s~~k~~~~~--~~-g--~-~~RiPaw~~~~~~~~~~~~~~~~~w~P~~--~~~y~~k~-- 392 (872)
T PLN03244 323 ESRKGRKAWLKKYIPAIPHGSKYRLYFNT--PD-G--P-LERIPAWATYVLPDDDGKQAFAIHWEPPP--EAAHKWKN-- 392 (872)
T ss_pred HhhcccCceeecccCCCCCCCeEEEEEEc--CC-C--C-cccCCCCeeeEEecCCCCceeeeEeCCCc--ccCCccCC--
Confidence 44 56789999999999999999988863 21 2 2 3466777776655432 1 22333221 22345755
Q ss_pred cCCCCCCCCCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccc
Q 002079 324 YEKPDILSFSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENW 403 (971)
Q Consensus 324 ~~~P~~~~~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~ 403 (971)
.+|. .+....|||.||.-.+. .+ .-|+|..|+++
T Consensus 393 -~~p~--~p~~lrIYE~HvGms~~-e~-----kv~ty~eF~~~------------------------------------- 426 (872)
T PLN03244 393 -MKPK--VPESLRIYECHVGISGS-EP-----KISSFEEFTEK------------------------------------- 426 (872)
T ss_pred -CCCC--CCCCceEEEEEeeecCC-CC-----CcccHHHHhhc-------------------------------------
Confidence 2342 45778999999997653 33 34999888652
Q ss_pred cccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCC
Q 002079 404 KSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNP 483 (971)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~ 483 (971)
+.+||||+++|||
T Consensus 427 -----------------------------------------------------------------vt~fFApssRYGT-- 439 (872)
T PLN03244 427 -----------------------------------------------------------------VTNFFAASSRYGT-- 439 (872)
T ss_pred -----------------------------------------------------------------cCcccccCcccCC--
Confidence 2378999999999
Q ss_pred CCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHH
Q 002079 484 NGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERL 563 (971)
Q Consensus 484 ~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~ 563 (971)
.+|||+||++||++||+||||||+||++.++... ...+|.....||+ .+..|....+ .|...|..+++|+++
T Consensus 440 -----PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~G-L~~fDGt~~~Yf~-~~~~g~~~~W-Gs~~fnyg~~EVr~F 511 (872)
T PLN03244 440 -----PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSNDCYFH-TGKRGHHKHW-GTRMFKYGDLDVLHF 511 (872)
T ss_pred -----HHHHHHHHHHHHHCCCEEEEEecCccCCCccccc-hhhcCCCccceec-cCCCCccCCC-CCceecCCCHHHHHH
Confidence 3589999999999999999999999998765322 2345543224555 3344543333 446789999999999
Q ss_pred HHHHHHHHHHhCCccEEEEecCCCCc-------------------------HHHHHHHHHHHHhhcccccCCCCCCcEEe
Q 002079 564 IIDDLLCWAVNYKVDGFRFDLMGHIM-------------------------KSTMMKAKHALHSLTKEIHGVDGSSIYIY 618 (971)
Q Consensus 564 i~Dsl~~W~~ey~IDGFRfDlm~~~~-------------------------~~~~~~~~~al~~i~p~~~~~~~~~~~l~ 618 (971)
|++++++|++||||||||||++..|. ..++..+.+.|+++. |++++|
T Consensus 512 LLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~--------P~~itI 583 (872)
T PLN03244 512 LISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALH--------PKIITI 583 (872)
T ss_pred HHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhC--------CCeEEE
Confidence 99999999999999999999884332 123455666666665 579999
Q ss_pred ccccc
Q 002079 619 GEGWD 623 (971)
Q Consensus 619 GEgWd 623 (971)
+|-..
T Consensus 584 AEDsS 588 (872)
T PLN03244 584 AEDAT 588 (872)
T ss_pred EEcCC
Confidence 99653
No 31
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.9e-32 Score=313.96 Aligned_cols=190 Identities=24% Similarity=0.380 Sum_probs=151.8
Q ss_pred ceEEEEEcccccccCCCCCC-CC-CcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCc
Q 002079 335 ISIYELHVRDFSVSDHTVHP-DF-RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGL 412 (971)
Q Consensus 335 ~vIYElHVrdFs~~d~s~~~-~~-rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~ 412 (971)
.+||++.+|+|...+.+.+. .. .|++.|++++ |+||++|||++|||+|+++...
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~-------LdYl~~LGv~aiwl~Pi~~s~~----------------- 56 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEK-------LDYLKELGVDAIWLSPIFESPQ----------------- 56 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHh-------hhHHHHhCCCEEEeCCCCCCCc-----------------
Confidence 48999999999987652111 12 4899988765 9999999999999999998642
Q ss_pred cccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHH
Q 002079 413 VFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEF 492 (971)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Ef 492 (971)
.++||++.+|+.+++.||| +++|
T Consensus 57 --------------------------------------------------~~~gY~~~Dy~~id~~~Gt-------~~d~ 79 (505)
T COG0366 57 --------------------------------------------------ADHGYDVSDYTKVDPHFGT-------EEDF 79 (505)
T ss_pred --------------------------------------------------cCCCccccchhhcCcccCC-------HHHH
Confidence 5899999999999999999 4689
Q ss_pred HHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCC---cceeecCC--------------CCc---------ccc
Q 002079 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVP---GYYLRRNS--------------DGF---------IEH 546 (971)
Q Consensus 493 r~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP---~YY~r~~~--------------~G~---------~~~ 546 (971)
++||+++|++||+||||+|+|||+..++|+..+...+..| .||.+.+. .|. +..
T Consensus 80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (505)
T COG0366 80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYL 159 (505)
T ss_pred HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEE
Confidence 9999999999999999999999999888875554444321 56665321 011 100
Q ss_pred ---CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH-----------HHHHHHHHHHHhhccc
Q 002079 547 ---STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK-----------STMMKAKHALHSLTKE 606 (971)
Q Consensus 547 ---stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~-----------~~~~~~~~al~~i~p~ 606 (971)
..-.+++|.+|+.|++.|.+.+++|++ +||||||+|++.|+.+ .++..+.+.+++..++
T Consensus 160 ~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (505)
T COG0366 160 HLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPD 232 (505)
T ss_pred EecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHH
Confidence 112357899999999999999999997 8999999999999999 6678888888888754
No 32
>PLN02784 alpha-amylase
Probab=99.97 E-value=2.1e-30 Score=310.12 Aligned_cols=190 Identities=19% Similarity=0.244 Sum_probs=140.0
Q ss_pred CCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCc
Q 002079 333 SDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGL 412 (971)
Q Consensus 333 ~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~ 412 (971)
.....||+.+..|.-.-. .. ..=|.++++ +|+||++||||+|||+|+++..
T Consensus 497 ~~~~~~eVmlQgF~Wds~---~d-g~w~~~I~e-------kldyL~~LG~taIWLpP~~~s~------------------ 547 (894)
T PLN02784 497 GTGSGFEILCQGFNWESH---KS-GRWYMELGE-------KAAELSSLGFTVVWLPPPTESV------------------ 547 (894)
T ss_pred cccCCceEEEEeEEcCcC---CC-CchHHHHHH-------HHHHHHHhCCCEEEeCCCCCCC------------------
Confidence 456688888888874211 11 122566654 5999999999999999998643
Q ss_pred cccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHH
Q 002079 413 VFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEF 492 (971)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Ef 492 (971)
.+|||+|.+||.++++|||. +||
T Consensus 548 --------------------------------------------------s~~GY~p~D~y~lds~yGT~-------~EL 570 (894)
T PLN02784 548 --------------------------------------------------SPEGYMPKDLYNLNSRYGTI-------DEL 570 (894)
T ss_pred --------------------------------------------------CCCCcCcccccccCcCcCCH-------HHH
Confidence 36899999999999999994 589
Q ss_pred HHHHHHHHhcCCEEEEEEeeccccCCCCCC--CCCccCCCCCcceeecCC-----------CCcc---ccCCCCCCCCCC
Q 002079 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFD--DNSVLDKVVPGYYLRRNS-----------DGFI---EHSTCMNNTASE 556 (971)
Q Consensus 493 r~mV~alH~~Gi~VIlDvVyNHt~~~g~~~--~~s~lDk~vP~YY~r~~~-----------~G~~---~~stc~~d~a~e 556 (971)
|+||++||++||+||+|+|+||++...... ..+.+. ++|.+.+. .|.. .+..+.+|+|++
T Consensus 571 k~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~----g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~ 646 (894)
T PLN02784 571 KDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFG----GRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 646 (894)
T ss_pred HHHHHHHHHCCCEEEEEECcccccccccCCCCcccccC----CeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCC
Confidence 999999999999999999999997531100 011111 11111110 0111 123467899999
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCCCCcEEecccccc
Q 002079 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (971)
Q Consensus 557 ~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~ 624 (971)
|+.|++.|.+.+++|++++||||||||+++|+...++.+. +++.. ..|++||.|+.
T Consensus 647 npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkey---v~a~k---------p~F~VGEyWd~ 702 (894)
T PLN02784 647 QDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDY---MEASE---------PYFAVGEYWDS 702 (894)
T ss_pred CHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHH---HhccC---------CcEEEEEeccc
Confidence 9999999999999998999999999999999988875544 33333 27999999985
No 33
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.96 E-value=9.5e-29 Score=286.83 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=127.9
Q ss_pred cccccccccchhhhhhHH-HHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccch
Q 002079 358 GGYLAFTLQNSAGVSHLK-KLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (971)
Q Consensus 358 G~y~g~~e~~s~~i~hL~-~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (971)
|++.|++++ |+ ||+++ |+.|||||+|....
T Consensus 17 GdL~gl~~k-------Ld~yL~~l-v~~vhllPff~psp----------------------------------------- 47 (495)
T PRK13840 17 GGLKSLTAL-------LDGRLDGL-FGGVHILPFFYPID----------------------------------------- 47 (495)
T ss_pred CCHhHHHHH-------HHHHHHHH-hCeEEECCCccCCC-----------------------------------------
Confidence 899988765 99 59999 99999999994321
Q ss_pred hhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeecccc
Q 002079 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (971)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~ 516 (971)
+..+|||+.+|+.+++.||| +++|++|++ ||+||||+|+|||+
T Consensus 48 -------------------------~sD~GYdv~DY~~VDP~fGt-------~eDf~~L~~-----giklmlDlV~NHtS 90 (495)
T PRK13840 48 -------------------------GADAGFDPIDHTKVDPRLGD-------WDDVKALGK-----THDIMADLIVNHMS 90 (495)
T ss_pred -------------------------CCCCCCCCcChhhcCcccCC-------HHHHHHHHh-----CCeEEEEECCCcCC
Confidence 13579999999999999999 568999995 99999999999999
Q ss_pred CCCCCCCCCcc---CCCCCcceeecCC------------------CCc-------------cccC---CCCCCCCCCCHH
Q 002079 517 GSGPFDDNSVL---DKVVPGYYLRRNS------------------DGF-------------IEHS---TCMNNTASEHYM 559 (971)
Q Consensus 517 ~~g~~~~~s~l---Dk~vP~YY~r~~~------------------~G~-------------~~~s---tc~~d~a~e~~m 559 (971)
..++|+..+.- +.....||.+.+. .|. +.+. ...+|+|++||.
T Consensus 91 ~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~ 170 (495)
T PRK13840 91 AESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAA 170 (495)
T ss_pred CCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHH
Confidence 99998754211 2222356654331 011 0111 135789999999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEecCCCCcHH-------------HHHHHHHHHHhhcccccCCCCCCcEEecccccc
Q 002079 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHIMKS-------------TMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDF 624 (971)
Q Consensus 560 v~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~-------------~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~ 624 (971)
|+++|++.+++|++ .||||||+|+++++.|. +++++++.++.. +..+++|.|..
T Consensus 171 V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~----------~~~ll~Ei~~y 237 (495)
T PRK13840 171 GWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARAR----------GMEVLVEIHSY 237 (495)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhc----------CCEEEEeCccc
Confidence 99999999999995 79999999999876552 455666666543 24688998863
No 34
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.7e-28 Score=286.85 Aligned_cols=474 Identities=19% Similarity=0.225 Sum_probs=271.7
Q ss_pred CCCceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCC
Q 002079 332 FSDISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPG 411 (971)
Q Consensus 332 ~~d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~ 411 (971)
|...+|||+.+|+|..++.... |++.|+++| |+||+++|+|+|||.|+++...
T Consensus 15 W~~~~~YQI~~~sF~~s~~d~~----G~~~GI~~k-------ldyi~~lG~taiWisP~~~s~~---------------- 67 (545)
T KOG0471|consen 15 WKTESIYQIYPDSFADSDGDGV----GDLKGITSK-------LDYIKELGFTAIWLSPFTKSSK---------------- 67 (545)
T ss_pred hhcCceeEEeccccccccCCCc----cccccchhh-------hhHHHhcCCceEEeCCCcCCCH----------------
Confidence 5667999999999998765442 999999876 9999999999999999998752
Q ss_pred ccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHH
Q 002079 412 LVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIE 491 (971)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~E 491 (971)
.++||++.+|+.++++||| +++
T Consensus 68 ---------------------------------------------------~~~GY~~~d~~~l~p~fGt-------~ed 89 (545)
T KOG0471|consen 68 ---------------------------------------------------PDFGYDASDLEQLRPRFGT-------EED 89 (545)
T ss_pred ---------------------------------------------------HHhccCccchhhhcccccH-------HHH
Confidence 2789999999999999999 568
Q ss_pred HHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCC-CcceeecCCC----C---------------ccc------
Q 002079 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVV-PGYYLRRNSD----G---------------FIE------ 545 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~v-P~YY~r~~~~----G---------------~~~------ 545 (971)
|++||+++|++||++|+|+|.||++..++|+..+...+.. -.||.+.+.. | ...
T Consensus 90 f~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~ 169 (545)
T KOG0471|consen 90 FKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQ 169 (545)
T ss_pred HHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCccccccc
Confidence 9999999999999999999999999888887776666543 1133222110 0 000
Q ss_pred c------CCCCCCCCCCCHHHHHHHHHHHH-HHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCCCCcEEe
Q 002079 546 H------STCMNNTASEHYMVERLIIDDLL-CWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIY 618 (971)
Q Consensus 546 ~------stc~~d~a~e~~mv~k~i~Dsl~-~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~~~~~l~ 618 (971)
. ....+|+|++++.|++.|.++++ +|. ++||||||+|+++++...++. ...++ ..+.-.
T Consensus 170 ~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-------~~~~~------~p~~~~ 235 (545)
T KOG0471|consen 170 KYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-------NMWPD------EPVFDV 235 (545)
T ss_pred ceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-------ccccC------CCcccc
Confidence 0 11236889999999999999999 776 689999999999999887643 11111 234556
Q ss_pred ccccccccc-ccccccccccccccCCCcccccchHHHHHHcC-CCCCCCCcccccccccccCCCCCCCCChHHHHHHHHH
Q 002079 619 GEGWDFGEV-AKNGRGVNASQFNLSGTGIGSFNDRIRDAMLG-GSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAA 696 (971)
Q Consensus 619 GEgWd~gev-~~~~~~~~a~q~~~~gtgig~fnDrlRdavrg-g~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~ 696 (971)
||.|...+- ........-.+.. +..+-...|..+.. ...| +|..+...+-. .... .+....+..
T Consensus 236 ~~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~--~~~~-~~~~~~~~~ 301 (545)
T KOG0471|consen 236 GEKLQDDNYVAYQYNDYGEDQPE-----IHDLIRAERFLLDDYSAAF------GFGDKRILQTE--AYSS-LEQLLRLLE 301 (545)
T ss_pred eeEecCcchhhcccccccccchh-----hhhHHHHHHhhhhhhhhcc------cccchhhhhhh--hhcc-HHHHHhhhc
Confidence 666654331 1000000000000 00000011111111 0001 11100000000 0000 000000000
Q ss_pred HHhhHHhhh----cccchhhhccccCCcccccccccccCCCCccccCCCCceeeeccccccccHHHHh------------
Q 002079 697 AKDHIQVGL----AANLRDFQLTNSEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETLFDVV------------ 760 (971)
Q Consensus 697 ~~d~i~~gl----aGnl~~~~~~~~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL~D~l------------ 760 (971)
..+..+... -+++....+. ...-..+... .|.+... ..-...--.+.+||..++...+
T Consensus 302 n~~~~~~~~~~~~~~~lt~~~~~--~~~~~~~~~~-~~~~~~~---~~~~~a~W~~~~~~~~r~~sr~~~~~~~~~~~l~ 375 (545)
T KOG0471|consen 302 NSSKPRGSDLPFNFDTLSDLGLT--VASIYKEVEV-DWLSNHD---TENRWAHWVLGNHDQARLASRFGSDSVDLLNVLL 375 (545)
T ss_pred cCCCCccccccchhhhhhhhhcc--chHHHHHHHH-HHHhcCC---ccCCceeeeecCccchhhHHHhcchhHHHHhHHh
Confidence 000000000 0000000000 0000000000 1111000 0112345678889988877322
Q ss_pred -cCCCeeeEeccccccccCC--CCCCCCCCC--CCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhh
Q 002079 761 -SLKGIPFFHCGDEILRSKS--LDRDSYNSG--DWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSH 835 (971)
Q Consensus 761 -~~~GiPfiy~GdEigrSks--~d~nsY~sg--D~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~ 835 (971)
.+.|+|++|+|+|+++..- ...++++.. .+.++|+|+.++| .|++ .....|-.+.......+.+....+
T Consensus 376 ~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~---~gfs---~~~~~~~~~~~~~~~~n~~~~~~~ 449 (545)
T KOG0471|consen 376 LTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTN---AGFS---EASKTWLPVNADYTVINVKMQSGD 449 (545)
T ss_pred cccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccc---cCCC---CccCcceeccccchhheeeccccC
Confidence 2349999999999998765 233333321 2267888987643 3443 112346554444444445666666
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCC
Q 002079 836 ILAALENFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPT 915 (971)
Q Consensus 836 ~~~~~~~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~ 915 (971)
...+...|++++.||+++..++.|.. ++.. ..++++++++.... ...+++++|.+..
T Consensus 450 ~~s~~~~~~~~~~lr~~~~~~~~g~~--------~~~~---~~~~if~~~r~~~~------------~~~~~~~~~~~~~ 506 (545)
T KOG0471|consen 450 PQSTLKLFKRLLDLRKSERSYLHGSF--------VLFA---ATPGLFSFSRNWDG------------NERFIAVLNFGDS 506 (545)
T ss_pred CccHHHHHHHHHHHhhhcccccccce--------eeec---CCCceEEEEeccCC------------CceEEEEEecCCc
Confidence 67899999999999999985555542 1111 24679999988653 3678888899888
Q ss_pred cEEEEcCCCCCCceEeecceeccccccccCcceeecCcEEEEcCceEEEEE
Q 002079 916 EVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFV 966 (971)
Q Consensus 916 ~~~~~lp~~~~~~~~l~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVfv 966 (971)
+....+-.+.. +.. + .+.. .......++|.|++.+||.
T Consensus 507 ~~~~~~~~~~~--~~~---~-~~~~-------~~~~~~~~~l~p~e~~vl~ 544 (545)
T KOG0471|consen 507 PLSLNLTDLDS--VSL---L-SSNY-------SDVDLSRLKLEPHEGLVLR 544 (545)
T ss_pred ccccccccccc--eee---e-eccc-------cccccceeeecCCceEEEe
Confidence 77665543322 111 0 0000 1123457999999999985
No 35
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.96 E-value=1.4e-28 Score=283.88 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=102.4
Q ss_pred CCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccC---CCCCcceeec--
Q 002079 464 NWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLD---KVVPGYYLRR-- 538 (971)
Q Consensus 464 nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lD---k~vP~YY~r~-- 538 (971)
++|||+.+|+.+++.||| +++|++|+++ |+||+|+|+|||+..++|+..+.-+ .....||...
T Consensus 45 D~GYdv~DY~~VDP~~Gt-------~~Df~~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~ 112 (470)
T TIGR03852 45 DRGFAPMDYTEVDPAFGD-------WSDVEALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKD 112 (470)
T ss_pred CCCcCchhhceeCcccCC-------HHHHHHHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEeccc
Confidence 789999999999999999 4689999998 7999999999999999997553322 2223567611
Q ss_pred ---C--C---C--------------------C--cccc---CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 002079 539 ---N--S---D--------------------G--FIEH---STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (971)
Q Consensus 539 ---~--~---~--------------------G--~~~~---stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm 585 (971)
+ + + | .+.+ +....|+|++|+.|+++|.+.+++|+ +.||||||+|++
T Consensus 113 ~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv 191 (470)
T TIGR03852 113 FWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAF 191 (470)
T ss_pred ccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecc
Confidence 0 0 0 0 0111 12467999999999999999999999 579999999999
Q ss_pred CCCcHH-----HH--HHHHHHHHhhcccccCCCCCCcEEeccccc
Q 002079 586 GHIMKS-----TM--MKAKHALHSLTKEIHGVDGSSIYIYGEGWD 623 (971)
Q Consensus 586 ~~~~~~-----~~--~~~~~al~~i~p~~~~~~~~~~~l~GEgWd 623 (971)
+++.|. ++ .+..+.++.+..- +..++++|++|.|.
T Consensus 192 ~~l~K~~Gt~c~~l~pet~~~l~~~r~~---~~~~~~~ll~E~~~ 233 (470)
T TIGR03852 192 AYAVKKLGTNDFFVEPEIWELLDEVRDI---LAPTGAEILPEIHE 233 (470)
T ss_pred hhhcccCCCCcccCChhHHHHHHHHHHH---hccCCCEEEeHhhh
Confidence 766553 11 1222222222210 01267999999973
No 36
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.93 E-value=4.1e-24 Score=249.66 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=112.7
Q ss_pred hHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHH
Q 002079 373 HLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQA 452 (971)
Q Consensus 373 hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~ 452 (971)
-.+||++|||++|||.|+|+...|.... .++
T Consensus 79 ~wdyL~~LGV~~iwl~P~~~SGgi~g~~---~tP---------------------------------------------- 109 (688)
T TIGR02455 79 LWKALSEIGVQGIHNGPIKLSGGIRGRE---FTP---------------------------------------------- 109 (688)
T ss_pred HHHHHHHhCCCEEEeCcceecccccccC---CCC----------------------------------------------
Confidence 3566777799999999999997654311 000
Q ss_pred HHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCcc-CCCC
Q 002079 453 QITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVL-DKVV 531 (971)
Q Consensus 453 ~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~l-Dk~v 531 (971)
....|||..+| .+++.||| ++||++||+++|++||+||+|+|.|||+..+++ ..+.. ++-.
T Consensus 110 ---------~~D~gyDi~d~-~Idp~~GT-------~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF-~lAr~~~~~Y 171 (688)
T TIGR02455 110 ---------SIDGNFDRISF-DIDPLLGS-------EEELIQLSRMAAAHNAITIDDIIPAHTGKGADF-RLAELAHGDY 171 (688)
T ss_pred ---------CCCCCCCcccC-ccCcccCC-------HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcch-HHHhhcCCCC
Confidence 24679999995 99999999 468999999999999999999999999998873 33222 4455
Q ss_pred Cccee-----------ecCC-CC----------------------c----c------c--cC------------------
Q 002079 532 PGYYL-----------RRNS-DG----------------------F----I------E--HS------------------ 547 (971)
Q Consensus 532 P~YY~-----------r~~~-~G----------------------~----~------~--~s------------------ 547 (971)
|+||| +.+. .+ . + + ++
T Consensus 172 ~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y 251 (688)
T TIGR02455 172 PGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVY 251 (688)
T ss_pred CCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhh
Confidence 78882 2221 11 0 0 0 11
Q ss_pred -----CCCCCCCCCCHH--HHHHHH-HHHHHHHHhCCccEEEEecCCCCc
Q 002079 548 -----TCMNNTASEHYM--VERLII-DDLLCWAVNYKVDGFRFDLMGHIM 589 (971)
Q Consensus 548 -----tc~~d~a~e~~m--v~k~i~-Dsl~~W~~ey~IDGFRfDlm~~~~ 589 (971)
...+++|+.||. +++.|+ |.+.+|. +.|+||||+|+++++.
T Consensus 252 ~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg 300 (688)
T TIGR02455 252 LHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLG 300 (688)
T ss_pred hhhccCCCCccCccCccHHHHHHHHHHHHHHHH-Hhccccceecccccee
Confidence 134689999999 999999 9999998 6899999999987764
No 37
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.93 E-value=2.5e-24 Score=260.53 Aligned_cols=179 Identities=22% Similarity=0.231 Sum_probs=133.1
Q ss_pred cccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchh
Q 002079 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (971)
Q Consensus 358 G~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (971)
|||.++++ +|+||++||||||||+|+|+...
T Consensus 13 ~tf~~~~~-------~L~YL~~LGv~~V~lsPi~~a~~------------------------------------------ 43 (825)
T TIGR02401 13 FTFDDAAA-------LLPYLKSLGVSHLYLSPILTAVP------------------------------------------ 43 (825)
T ss_pred CCHHHHHH-------hhHHHHHcCCCEEEeCcCccCCC------------------------------------------
Confidence 78877754 59999999999999999997532
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccC
Q 002079 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (971)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~ 517 (971)
+.+||||+.+|+.+++.||+. ++|++||++||++||+||||+|+||++.
T Consensus 44 ------------------------gs~hGYdv~D~~~idp~lGt~-------edf~~Lv~aah~~Gm~vIlDiVpNH~a~ 92 (825)
T TIGR02401 44 ------------------------GSTHGYDVVDHSEINPELGGE-------EGLRRLSEAARARGLGLIVDIVPNHMAV 92 (825)
T ss_pred ------------------------CCCCCCCCCCCCCcCCCCCCH-------HHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 258999999999999999994 5899999999999999999999999987
Q ss_pred CC---CCCCC-------C----cc--CCC----------------------------C--------CcceeecCCC--Cc
Q 002079 518 SG---PFDDN-------S----VL--DKV----------------------------V--------PGYYLRRNSD--GF 543 (971)
Q Consensus 518 ~g---~~~~~-------s----~l--Dk~----------------------------v--------P~YY~r~~~~--G~ 543 (971)
.+ +|... | .+ |-. + =.||+..-+- +.
T Consensus 93 ~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~t 172 (825)
T TIGR02401 93 HLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGT 172 (825)
T ss_pred ccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccc
Confidence 52 33210 0 01 000 0 0144332110 00
Q ss_pred c-------------c-----------------------c------CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEE
Q 002079 544 I-------------E-----------------------H------STCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFR 581 (971)
Q Consensus 544 ~-------------~-----------------------~------stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFR 581 (971)
+ . | -.-...++.|++.|.......+..|++++.|||+|
T Consensus 173 y~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlR 252 (825)
T TIGR02401 173 LPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLR 252 (825)
T ss_pred hhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEE
Confidence 0 0 0 00123457999999999999999999998899999
Q ss_pred EecCCCC--cHHHHHHHHHHHHhhcccccCCCCCCcEEecc-ccccccc
Q 002079 582 FDLMGHI--MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGE-GWDFGEV 627 (971)
Q Consensus 582 fDlm~~~--~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GE-gWd~gev 627 (971)
+|.+.++ |+.++.++++++ |++.|++.| .|..+|.
T Consensus 253 IDh~dGL~dP~~Yl~rLr~~~-----------~~~~yivvEKIl~~~E~ 290 (825)
T TIGR02401 253 IDHIDGLADPEGYLRRLRELV-----------GPARYLVVEKILAPGEH 290 (825)
T ss_pred eccccccCChHHHHHHHHHhc-----------CCCceEEEEEeccCCCc
Confidence 9999999 888988887552 234799999 7777774
No 38
>smart00642 Aamy Alpha-amylase domain.
Probab=99.77 E-value=6.8e-19 Score=179.46 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=83.6
Q ss_pred EEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccC
Q 002079 339 ELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQN 418 (971)
Q Consensus 339 ElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~ 418 (971)
++.++.|..++++. .|+|.+++++ |+||++||||+|||+|+++....
T Consensus 1 qi~~~~F~~~~~~~----~G~~~gi~~~-------l~yl~~lG~~~I~l~Pi~~~~~~---------------------- 47 (166)
T smart00642 1 QIYPDRFADGNGDG----GGDLQGIIEK-------LDYLKDLGVTAIWLSPIFESPQG---------------------- 47 (166)
T ss_pred CeeeccccCCCCCC----CcCHHHHHHH-------HHHHHHCCCCEEEECcceeCCCC----------------------
Confidence 45688898876554 6999998765 88999999999999999987531
Q ss_pred CCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHH
Q 002079 419 TFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQA 498 (971)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~a 498 (971)
...+|||+|.+|++++++||+ ++|||+||++
T Consensus 48 ------------------------------------------~~~~~gY~~~d~~~i~~~~Gt-------~~d~~~lv~~ 78 (166)
T smart00642 48 ------------------------------------------YPSYHGYDISDYKQIDPRFGT-------MEDFKELVDA 78 (166)
T ss_pred ------------------------------------------CCCCCCcCccccCCCCcccCC-------HHHHHHHHHH
Confidence 025899999999999999999 4689999999
Q ss_pred HHhcCCEEEEEEeeccccC
Q 002079 499 LNHIGLHVVLDVVYNHLQG 517 (971)
Q Consensus 499 lH~~Gi~VIlDvVyNHt~~ 517 (971)
||++||+||||+|+|||+.
T Consensus 79 ~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 79 AHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHCCCEEEEEECCCCCCC
Confidence 9999999999999999964
No 39
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.75 E-value=7.3e-18 Score=157.64 Aligned_cols=96 Identities=43% Similarity=0.725 Sum_probs=82.7
Q ss_pred CccEEeCCeeEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEEecCCCcccccee
Q 002079 210 LGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCY 288 (971)
Q Consensus 210 LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~~~~ 288 (971)
|||++.+++++|+||||+|++|+|+||+++....+...++| ++.+|+|++.+++.++|.+|+|+|+... ....+
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~-----~~~~~ 75 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYYYLYEVKVYK-----GETNE 75 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcEEEEEEEEec-----eEEEE
Confidence 79999999999999999999999999987653344567899 6689999999999999999999998531 12458
Q ss_pred ecCccccccccCCCccEEEeCC
Q 002079 289 ANDPYARGLSSDGRRTLLVNLD 310 (971)
Q Consensus 289 vtDPYa~~ls~ng~~s~vvdl~ 310 (971)
++||||++++.|+.+|+++|+.
T Consensus 76 ~~DPyA~~~~~~~~~s~i~d~~ 97 (100)
T cd02860 76 VVDPYAKALSANGERSVDLDDK 97 (100)
T ss_pred EcCcccEeEeeCCCceEECChH
Confidence 9999999999999999988874
No 40
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1e-15 Score=166.01 Aligned_cols=151 Identities=29% Similarity=0.444 Sum_probs=106.1
Q ss_pred CCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccC---CCCCCCC---CccC--CCCCc--c-
Q 002079 466 GYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG---SGPFDDN---SVLD--KVVPG--Y- 534 (971)
Q Consensus 466 GYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~---~g~~~~~---s~lD--k~vP~--Y- 534 (971)
.|.|..|-- +.+-|. -+||+.||..|++-|.|+++|||+||+.. +|..... +..+ +--|+ |
T Consensus 79 RYQPvSYKL-~tRSGN-------E~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs 150 (504)
T KOG2212|consen 79 RYQPVSYKL-CTRSGN-------EDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYS 150 (504)
T ss_pred ecccceEEe-eccCCC-------HHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcc
Confidence 699999853 444454 25999999999999999999999999983 2111000 0011 11121 1
Q ss_pred ---eeecCCC---CccccC-------CC----CCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHH
Q 002079 535 ---YLRRNSD---GFIEHS-------TC----MNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAK 597 (971)
Q Consensus 535 ---Y~r~~~~---G~~~~s-------tc----~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~ 597 (971)
|+....+ +.+++. .| .-|+|..+.-||.-|++-|.+.+ |.||-|||.|+++||..+.++.+.
T Consensus 151 ~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~ 229 (504)
T KOG2212|consen 151 GWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAIL 229 (504)
T ss_pred cccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHH
Confidence 1110001 112211 12 34788899999999999999988 799999999999999999999999
Q ss_pred HHHHhhcccccCCCCCCcEEecccccccc
Q 002079 598 HALHSLTKEIHGVDGSSIYIYGEGWDFGE 626 (971)
Q Consensus 598 ~al~~i~p~~~~~~~~~~~l~GEgWd~ge 626 (971)
..|+.++.+.-+ .++.-|+|-|.-|.|.
T Consensus 230 ~~l~nLnsD~f~-s~srpfi~qEVID~Gg 257 (504)
T KOG2212|consen 230 DKLHNLNSDWFP-SGSKPFIYQEVIDLGG 257 (504)
T ss_pred HHHhhccccccc-CCCCceehhhhhhcCC
Confidence 999999876222 3577899999888664
No 41
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.64 E-value=8.5e-16 Score=144.64 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=75.9
Q ss_pred CCccEEeCCeeEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEE-ecCCCcc--c
Q 002079 209 PLGALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ--I 284 (971)
Q Consensus 209 ~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~-~~p~~g~--~ 284 (971)
+|||++.+++++|+||||+|++|+|++|++... ...++| ++.+|+|++.+++..+|.+|+|+|+. ++|..+. .
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~---~~~~~m~~~~~GvW~~~v~~~~~g~~Y~y~i~g~~~p~~~~~~~ 77 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCLFDEDGS---ETRLPLTEEYGGVWHGFLPGIKAGQRYGFRVHGPYDPERGLRFN 77 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEEEeCCCC---EEEEEcccccCCEEEEEECCCCCCCEEEEEECCccCcccCcccC
Confidence 699999999999999999999999999975431 357899 56789999999999999999999986 5665443 2
Q ss_pred cceeecCccccccccCCC
Q 002079 285 EKCYANDPYARGLSSDGR 302 (971)
Q Consensus 285 ~~~~vtDPYa~~ls~ng~ 302 (971)
.+.+++||||++++..+.
T Consensus 78 ~~~~~~DPYA~~~~~~~~ 95 (103)
T cd02856 78 PAKLLLDPYARALDGPLA 95 (103)
T ss_pred CCeEEecCCcceEcCCcc
Confidence 457899999999976543
No 42
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.61 E-value=7e-15 Score=169.91 Aligned_cols=338 Identities=19% Similarity=0.281 Sum_probs=199.1
Q ss_pred CCCccEEeCCe-eEEEEEcCCCC-------eEEEEEecCCCCCC---C-------ceEEecccCC-CEEEEE-----eCC
Q 002079 208 GPLGALYAEET-VSLYLWAPTAQ-------SVSACIYRDPLGGN---P-------LEVVQLKEND-GVWSIK-----GPK 263 (971)
Q Consensus 208 ~~LGa~~~~~~-v~F~vWAPtA~-------~V~L~ly~~~~~~~---~-------~~~~~M~~~~-GvW~v~-----~~~ 263 (971)
..|||++.++| +.|-.|.|.-. .|.|.+|..-+... + ...+++...+ =.|-|. +..
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgVv~GlraGtr 105 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGVVAGLRAGTR 105 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeehhhccCCCCc
Confidence 46999999766 89999999654 89999997543321 1 1234553333 345443 123
Q ss_pred CCCCceEEEEEEEecCCCccccceeecCccccccccCCC--ccEEEeCCCCCCC--CCcc-cc-----cccCCCCCCCCC
Q 002079 264 SWEGCYYVYEVSVYHPSALQIEKCYANDPYARGLSSDGR--RTLLVNLDSDTLK--PEGW-DK-----LVYEKPDILSFS 333 (971)
Q Consensus 264 ~~~G~~Y~Y~v~~~~p~~g~~~~~~vtDPYa~~ls~ng~--~s~vvdl~~~~~~--p~~W-~~-----~~~~~P~~~~~~ 333 (971)
+..|.+|.-+..-.+ + +...+.||.+.|+.- |. +..+.|+..-..+ .-+. +. .....|.+. .
T Consensus 106 ~q~GsfYwLry~d~~---~--~~~~I~DpLaySlPy-GvfaPAElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~--~ 177 (811)
T PF14872_consen 106 DQAGSFYWLRYRDQD---G--EVQIIRDPLAYSLPY-GVFAPAELYDLERLQRRRADLDYFEATGAADPSDGIPRVP--A 177 (811)
T ss_pred ccccceEEEEEccCC---C--CeEEecccccccCcc-cccChHHhhchHhHhhhhhhHHHHHhhccccCCCCCcccC--C
Confidence 456789988765321 2 456899999988742 32 2334555431000 0000 00 001234443 3
Q ss_pred CceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHH------H--HHcCCcEEEeCCcccCCCCCcccccccc
Q 002079 334 DISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKK------L--SNAGLTHVHLLPTFQFAGVDDRKENWKS 405 (971)
Q Consensus 334 d~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~------L--~~lGvT~I~LlPvfd~~~v~e~~~~~~~ 405 (971)
...|-++||+.=|.. |++.|+|+.-..+-.+|.. . .=.|+.+|+||||=..-.-. ..
T Consensus 178 P~nILQiHv~TAsp~---------GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr---~e--- 242 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---------GTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYR---AE--- 242 (811)
T ss_pred CceeEEEecCCCCCC---------cchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceec---cc---
Confidence 467999999976542 9999998752222222210 0 01499999999984322100 00
Q ss_pred cCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCC-
Q 002079 406 VGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPN- 484 (971)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~- 484 (971)
.+.-..++..-.. ++..+.....+-.+.+.....++..|.-|||||..-+ ||=+|||.
T Consensus 243 -----------~~~~h~Ff~~~~~------d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~----GsaAtNPal 301 (811)
T PF14872_consen 243 -----------NEPGHEFFSIRPE------DEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVIL----GSAATNPAL 301 (811)
T ss_pred -----------cCCCCceeeeccc------ccccccccccccccCceEEEEecCCCccccCcceeee----ccCCCCHHH
Confidence 0000011100000 0000000000000011111235566789999998755 67788885
Q ss_pred -CCchhHHHHHHHHHHHh---cCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHH
Q 002079 485 -GSCRTIEFRRMVQALNH---IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMV 560 (971)
Q Consensus 485 -g~~ri~Efr~mV~alH~---~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv 560 (971)
++.|-.|+-++|..||. ..|+||+|+||.|.- +..++-+.+.|+.-.|- .+.|+|..||+|
T Consensus 302 L~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHAD-------NQ~~~LLn~~flkGPnM--------YGQdlnhq~P~V 366 (811)
T PF14872_consen 302 LETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHAD-------NQALDLLNRRFLKGPNM--------YGQDLNHQNPVV 366 (811)
T ss_pred HhcCCcHHHHHHHHHHhcCCCCCeEEEEeeeccccc-------chhhHhhhhhhccCCcc--------ccccccccChHH
Confidence 56789999999999994 689999999999983 33445454455532222 346899999999
Q ss_pred HHHHHHHHHHHHHhCCccEEEEecCCCC------------cHHHHHHHHHHHHhhcc
Q 002079 561 ERLIIDDLLCWAVNYKVDGFRFDLMGHI------------MKSTMMKAKHALHSLTK 605 (971)
Q Consensus 561 ~k~i~Dsl~~W~~ey~IDGFRfDlm~~~------------~~~~~~~~~~al~~i~p 605 (971)
|..+++.-+.=+ ++|+||.|+|-+... +.+.+.+.-+.++.+-.
T Consensus 367 RAILLEmQRRK~-n~GaDGIRVDGgQDFk~fnplt~~ve~DD~YL~~M~dvvQ~I~~ 422 (811)
T PF14872_consen 367 RAILLEMQRRKI-NTGADGIRVDGGQDFKFFNPLTGRVEYDDAYLLAMSDVVQEIGG 422 (811)
T ss_pred HHHHHHHHHhhc-ccCCceeEecccccceeecccccccccchHHHHHHHHHHhhccc
Confidence 999999888866 699999999987432 34456666666776654
No 43
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.59 E-value=4.9e-15 Score=142.86 Aligned_cols=94 Identities=22% Similarity=0.326 Sum_probs=75.7
Q ss_pred ccEEeCCeeEEEEEcCCCCeEEEEEecCCCCCCCceEEecc-c---CCCEEEEEeCCCCCCceEEEEEEE-ecCCCcc--
Q 002079 211 GALYAEETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK-E---NDGVWSIKGPKSWEGCYYVYEVSV-YHPSALQ-- 283 (971)
Q Consensus 211 Ga~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M~-~---~~GvW~v~~~~~~~G~~Y~Y~v~~-~~p~~g~-- 283 (971)
||++.+++++|+||||+|++|+|+||+++.+..+...++|. . .+|+|++.+++.+.|.+|.|+|+. ++|..+.
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~lf~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g~~~p~~g~~~ 80 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLLFDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDGPFEPEQGHRF 80 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEEEeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECCCCCCCccccc
Confidence 89999999999999999999999999875433455678993 3 369999999999999999999983 5555443
Q ss_pred ccceeecCccccccccCCCcc
Q 002079 284 IEKCYANDPYARGLSSDGRRT 304 (971)
Q Consensus 284 ~~~~~vtDPYa~~ls~ng~~s 304 (971)
.++.+++||||++++.+...+
T Consensus 81 ~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 81 DPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred CCCcEEECCCcCeEcCccccC
Confidence 244679999999998665444
No 44
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.48 E-value=9.8e-14 Score=126.21 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=67.5
Q ss_pred ccEEeC-CeeEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEEecCCCcccccee
Q 002079 211 GALYAE-ETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCY 288 (971)
Q Consensus 211 Ga~~~~-~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~~~~ 288 (971)
||++.+ ++++|+||||+|++|+|++|+ . ..++| ++..|+|++++++. +|.+|.|+|+. ...
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~-~------~~~~m~~~~~G~W~~~v~~~-~g~~Y~y~v~~---------~~~ 63 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD-G------EEIPMQRDGDGWFEAEVPGA-AGTRYRYRLDD---------GTP 63 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC-C------CcccCccCCCcEEEEEeCCC-CCCeEEEEECC---------CcC
Confidence 788887 799999999999999999985 1 24788 67889999999999 99999999961 247
Q ss_pred ecCcccccc--ccCCCccEEEeC
Q 002079 289 ANDPYARGL--SSDGRRTLLVNL 309 (971)
Q Consensus 289 vtDPYa~~l--s~ng~~s~vvdl 309 (971)
++||||+.+ ..++ .|+++|+
T Consensus 64 ~~DP~a~~~~~~~~~-~s~v~~~ 85 (85)
T cd02853 64 VPDPASRFQPEGVHG-PSQVVDP 85 (85)
T ss_pred CCCCccccCCCCCCC-CeEeeCc
Confidence 899999985 4455 5888763
No 45
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.48 E-value=5.1e-14 Score=172.30 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=72.5
Q ss_pred cccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchh
Q 002079 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (971)
Q Consensus 358 G~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (971)
++|.++++ .|+||++||||||||+|+|+...
T Consensus 17 ~tf~~~~~-------~l~YL~~LGis~IyLsPi~~a~~------------------------------------------ 47 (879)
T PRK14511 17 FTFDDAAE-------LVPYFADLGVSHLYLSPILAARP------------------------------------------ 47 (879)
T ss_pred CCHHHHHH-------HhHHHHHcCCCEEEECcCccCCC------------------------------------------
Confidence 67777654 59999999999999999997631
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccC
Q 002079 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (971)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~ 517 (971)
+.+||||+.+|+.+++.||+. ++|++||++||++||+||||+|+|||+.
T Consensus 48 ------------------------gs~hGYdv~D~~~idp~lGt~-------e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 48 ------------------------GSTHGYDVVDHTRINPELGGE-------EGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred ------------------------CCCCCCCcCCCCCcCCCCCCH-------HHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 358999999999999999994 5899999999999999999999999997
Q ss_pred CC
Q 002079 518 SG 519 (971)
Q Consensus 518 ~g 519 (971)
.+
T Consensus 97 ~~ 98 (879)
T PRK14511 97 GG 98 (879)
T ss_pred cC
Confidence 55
No 46
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.43 E-value=5e-13 Score=120.73 Aligned_cols=79 Identities=38% Similarity=0.703 Sum_probs=62.1
Q ss_pred CCccEEeCC--eeEEEEEcCCCCeEEEEEecCCCCCCCceEEecc--cCCCEEEEEeCCCCC-C-ceEEEEEEEecCCCc
Q 002079 209 PLGALYAEE--TVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQLK--ENDGVWSIKGPKSWE-G-CYYVYEVSVYHPSAL 282 (971)
Q Consensus 209 ~LGa~~~~~--~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M~--~~~GvW~v~~~~~~~-G-~~Y~Y~v~~~~p~~g 282 (971)
|||+++.++ +++|+||||+|++|+|+++... . .+.+.++|. ...|+|+++++..+. | .+|+|+|+..+ +
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~-~-~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~---g 75 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG-S-WPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD---G 75 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT-S-SEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT---T
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee-c-CCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC---C
Confidence 799999986 9999999999999999999876 2 345788994 689999999995544 5 69999998743 2
Q ss_pred cccceeecCccc
Q 002079 283 QIEKCYANDPYA 294 (971)
Q Consensus 283 ~~~~~~vtDPYa 294 (971)
++..+.||||
T Consensus 76 --~~~~~~DPYA 85 (85)
T PF02922_consen 76 --ETPEVVDPYA 85 (85)
T ss_dssp --EEEEET-TT-
T ss_pred --cEEEEeCCCC
Confidence 4678999997
No 47
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.38 E-value=2.6e-13 Score=174.92 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=70.6
Q ss_pred cccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchh
Q 002079 358 GGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADA 437 (971)
Q Consensus 358 G~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (971)
++|.+++ ++|+||++||||||||+|+|+...
T Consensus 755 ~tf~~~~-------~~l~Yl~~LGv~~i~lsPi~~a~~------------------------------------------ 785 (1693)
T PRK14507 755 FTFADAE-------AILPYLAALGISHVYASPILKARP------------------------------------------ 785 (1693)
T ss_pred CCHHHHH-------HHhHHHHHcCCCEEEECCCcCCCC------------------------------------------
Confidence 6776664 559999999999999999997532
Q ss_pred hhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccC
Q 002079 438 EVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (971)
Q Consensus 438 ~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~ 517 (971)
+.+||||+.+|+.+++.||+. ++|++||++||++||+||||+|+||++.
T Consensus 786 ------------------------gs~hGYdv~D~~~idp~lG~~-------edf~~Lv~~ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 786 ------------------------GSTHGYDIVDHSQINPEIGGE-------EGFERFCAALKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred ------------------------CCCCCCCCCCCCccCcccCCH-------HHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 258999999999999999994 5899999999999999999999999984
No 48
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.14 E-value=1.4e-10 Score=108.92 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=61.8
Q ss_pred eCCeeEEEEEcCCCCeEEEE-EecCCCCCCCceEEec-ccCCCEEEEEeCCC-------CCCceEEEEEEEecCCCcccc
Q 002079 215 AEETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL-KENDGVWSIKGPKS-------WEGCYYVYEVSVYHPSALQIE 285 (971)
Q Consensus 215 ~~~~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~-------~~G~~Y~Y~v~~~~p~~g~~~ 285 (971)
.+++++|+||||.|++|+|+ -|++++. ..++| +...|+|+++++++ .+|.+|+|+|... .| +
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~----~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~---~G--~ 73 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDR----NAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTP---SG--E 73 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCC----cCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeC---CC--C
Confidence 35689999999999999999 5666643 34678 56789999999985 4899999999862 13 4
Q ss_pred ceeecCccccccccCC
Q 002079 286 KCYANDPYARGLSSDG 301 (971)
Q Consensus 286 ~~~vtDPYa~~ls~ng 301 (971)
..++.||||+.+..+.
T Consensus 74 ~~~~~DPyA~~~~~~~ 89 (99)
T cd02854 74 WIDRIPAWIKYVTQDK 89 (99)
T ss_pred EEEEcCcceeEEEeCC
Confidence 5789999999886543
No 49
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.12 E-value=3.7e-10 Score=105.89 Aligned_cols=84 Identities=30% Similarity=0.362 Sum_probs=65.7
Q ss_pred CCccEEeC----CeeEEEEEcCCCCeEEEEE-ecCCCCCCCceEEec-c-cCCCEEEEEeCCCCCCceEEEEEEEecCCC
Q 002079 209 PLGALYAE----ETVSLYLWAPTAQSVSACI-YRDPLGGNPLEVVQL-K-ENDGVWSIKGPKSWEGCYYVYEVSVYHPSA 281 (971)
Q Consensus 209 ~LGa~~~~----~~v~F~vWAPtA~~V~L~l-y~~~~~~~~~~~~~M-~-~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~ 281 (971)
.||+++.+ ++++|+||+|+|++|+|++ |+++.. ..++| + ...|+|++.++....|.+|+|+|... .
T Consensus 9 ~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~----~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~---~ 81 (106)
T cd02855 9 KLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDG----RRHPMRRRGDSGVWELFIPGLGEGELYKYEILGA---D 81 (106)
T ss_pred hcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCC----cceecEECCCCCEEEEEECCCCCCCEEEEEEECC---C
Confidence 59999988 8999999999999999996 544322 23577 3 34899999999888889999999752 1
Q ss_pred ccccceeecCccccccccCC
Q 002079 282 LQIEKCYANDPYARGLSSDG 301 (971)
Q Consensus 282 g~~~~~~vtDPYa~~ls~ng 301 (971)
+ ....+.|||++.+..+.
T Consensus 82 g--~~~~~~DPYa~~~~~~~ 99 (106)
T cd02855 82 G--HLPLKADPYAFYSELRP 99 (106)
T ss_pred C--CEEEeeCCCceeeEeCC
Confidence 1 23568999999887653
No 50
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.03 E-value=2.4e-10 Score=144.08 Aligned_cols=89 Identities=18% Similarity=0.292 Sum_probs=75.0
Q ss_pred CcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccch
Q 002079 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFAD 436 (971)
Q Consensus 357 rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (971)
-|+|.+.. +||++|+++|+|.|||+|+++...
T Consensus 128 mG~~~~w~-------~~L~~ik~lGyN~IhftPI~~~G~----------------------------------------- 159 (1464)
T TIGR01531 128 LGPLSEWE-------PRLRVAKEKGYNMIHFTPLQELGG----------------------------------------- 159 (1464)
T ss_pred cCCHHHHH-------HHHHHHHHcCCCEEEeCCCccCCC-----------------------------------------
Confidence 48886654 579999999999999999997642
Q ss_pred hhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhc-CCEEEEEEeeccc
Q 002079 437 AEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHI-GLHVVLDVVYNHL 515 (971)
Q Consensus 437 ~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~-Gi~VIlDvVyNHt 515 (971)
.|+.|+..+|+.+++.|+... + ..++|++||+++|+. ||+||+|+|+|||
T Consensus 160 --------------------------SnS~Ysi~Dyl~idP~~~~~~-~--~~~d~~~lV~~~h~~~Gm~~ilDvV~NHT 210 (1464)
T TIGR01531 160 --------------------------SNSCYSLYDQLQLNQHFKSQK-D--GKNDVQALVEKLHRDWNVLSITDIVFNHT 210 (1464)
T ss_pred --------------------------CCCCccccchhhcChhhcccC-C--cHHHHHHHHHHHHHhcCCEEEEEeeeccc
Confidence 478899999999999998521 1 146899999999997 9999999999999
Q ss_pred cCCCCCC
Q 002079 516 QGSGPFD 522 (971)
Q Consensus 516 ~~~g~~~ 522 (971)
+..++|.
T Consensus 211 a~ds~Wl 217 (1464)
T TIGR01531 211 ANNSPWL 217 (1464)
T ss_pred ccCCHHH
Confidence 9876664
No 51
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=5.7e-10 Score=131.92 Aligned_cols=76 Identities=28% Similarity=0.410 Sum_probs=68.0
Q ss_pred hhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChH
Q 002079 370 GVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTE 449 (971)
Q Consensus 370 ~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~ 449 (971)
...-|+||++|||.|+|+.|||....
T Consensus 21 A~~~l~yl~~LGIShLY~SPIftA~p------------------------------------------------------ 46 (889)
T COG3280 21 ARALLDYLADLGISHLYLSPIFTARP------------------------------------------------------ 46 (889)
T ss_pred HHHhhHHHHhcCchheeccchhhcCC------------------------------------------------------
Confidence 45668999999999999999996532
Q ss_pred HHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCC
Q 002079 450 QQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGS 518 (971)
Q Consensus 450 ~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~ 518 (971)
+..||||..+++.+++..|..+ -|+.||+++|++||.+|+|+|.||++.+
T Consensus 47 ------------GStHGYDVvD~t~InPeLGG~e-------gl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 47 ------------GSTHGYDVVDPTEINPELGGEE-------GLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred ------------CCCCCccCCCccccChhhcChH-------HHHHHHHHHHhcCCceEEEecccchhcc
Confidence 4799999999999999999954 5999999999999999999999999876
No 52
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.85 E-value=1.2e-08 Score=93.12 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=53.5
Q ss_pred CCeeEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEEecCCCccccceeecCccc
Q 002079 216 EETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIEKCYANDPYA 294 (971)
Q Consensus 216 ~~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~~~~vtDPYa 294 (971)
++.++|+||||+|++|+|.++.+. ...++| +...|+|+++++ .+++.+|+|++.+. | ..+.||+|
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~-----~~~~~m~~~~~G~W~~~v~-~l~~g~Y~Y~~~vd----g----~~~~DP~s 70 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGG-----AGSHPMTKDEAGVWSVTTG-PLAPGIYTYSFLVD----G----VRVIDPSN 70 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCC-----CccEeCeECCCeEEEEEEC-CCCCcEEEEEEEEC----C----eEecCCCC
Confidence 357999999999999999986531 235788 567899999995 46777788887653 2 46899999
Q ss_pred cccc
Q 002079 295 RGLS 298 (971)
Q Consensus 295 ~~ls 298 (971)
+..-
T Consensus 71 ~~~~ 74 (85)
T cd02858 71 PTTK 74 (85)
T ss_pred Ccee
Confidence 8654
No 53
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.40 E-value=1.2e-06 Score=79.94 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEc
Q 002079 842 NFSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVS 921 (971)
Q Consensus 842 ~~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~l 921 (971)
+||+||+|||++|+|+.++...+. ....+ ...++++.+.++. +.++|++|.+++++++.
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~----~~~~~---~~~l~~~~r~~~~-------------~~l~v~~Nls~~~~~~~- 59 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLE----VERDA---PDALLAFRRTGGG-------------ERLLVAFNLSDEPVTVP- 59 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEE----EEEEE---ETTEEEEEEEETT-------------EEEEEEEE-SSS-EEEE-
T ss_pred CHHHHHHHHhhCccccCCCcccEE----EEecC---CCEEEEEEEEcCC-------------ceEEEEEecCCCcEEcc-
Confidence 699999999999999999865433 11111 2347777775432 68999999999999987
Q ss_pred CCCCCCceEeecceeccccccccCcceeecCcEEEEcCceEEEE
Q 002079 922 PALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVF 965 (971)
Q Consensus 922 p~~~~~~~~l~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVf 965 (971)
+ ...+++ ...+... ...+.++|||++++|+
T Consensus 60 ~---~~~~~~---l~~s~~~--------~~~~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 60 E---GPWGEV---LFSSEPA--------RAGGAGTLPPWSVVVL 89 (89)
T ss_dssp T---SCCEEE---EEECSCS--------SE--EEEE-TTEEEEE
T ss_pred C---CCCCeE---EEcCCCc--------ccccCceECCCEEEEC
Confidence 2 112221 1111111 1123899999999986
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.33 E-value=8.2e-07 Score=110.15 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=62.7
Q ss_pred CCccEEeCCeeEEEEEcCCCCeEEEE-EecCCCCCCCceEEecc--cCCCEEEEEeCCCCCCceEEEEEEEecCCCcccc
Q 002079 209 PLGALYAEETVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQLK--ENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIE 285 (971)
Q Consensus 209 ~LGa~~~~~~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M~--~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~ 285 (971)
.|||+....|++|+||||+|++|+|+ .|+. + ...+|. ...|+|++.+| ..+|..|+|+|.. + |.
T Consensus 20 ~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~--~----~~~~m~~~~~~G~w~~~ip-~~~g~~YKy~i~~-~---g~-- 86 (726)
T PRK05402 20 VLGPHPTGAGLVVRALLPGAEEVWVILPGGG--R----KLAELERLHPRGLFAGVLP-RKGPFDYRLRVTW-G---GG-- 86 (726)
T ss_pred hcCCCCCCCcEEEEEECCCCeEEEEEeecCC--C----ccccceEcCCCceEEEEec-CCCCCCeEEEEEe-C---Cc--
Confidence 59999988899999999999999998 4552 1 356783 47899999999 9999999999974 2 32
Q ss_pred ceeecCcccccc
Q 002079 286 KCYANDPYARGL 297 (971)
Q Consensus 286 ~~~vtDPYa~~l 297 (971)
.....||||...
T Consensus 87 ~~~k~DPyaf~~ 98 (726)
T PRK05402 87 EQLIDDPYRFGP 98 (726)
T ss_pred eeEeccccccCC
Confidence 468999999964
No 55
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.18 E-value=5.6e-06 Score=73.27 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=46.7
Q ss_pred CeeEEEEEcCCCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCCCC-CCceEEEEEEE
Q 002079 217 ETVSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPKSW-EGCYYVYEVSV 276 (971)
Q Consensus 217 ~~v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~-~G~~Y~Y~v~~ 276 (971)
++++|+||||.|++|+|+++.+.. ...++| +...|+|++.++... .+.+|+|+|..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~----~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~ 61 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD----TQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDG 61 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC----CCcccCEECCCceEEEEEcCCCCCCeEEEEEEeC
Confidence 579999999999999999876431 135788 567799999999888 88999999974
No 56
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.03 E-value=1.7e-05 Score=71.88 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=50.8
Q ss_pred eeEEEEEcCCCCeEEEE-EecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCc-eEEEEEEEecCCCccccceeecCccc
Q 002079 218 TVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGC-YYVYEVSVYHPSALQIEKCYANDPYA 294 (971)
Q Consensus 218 ~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~-~Y~Y~v~~~~p~~g~~~~~~vtDPYa 294 (971)
.++|++|||.|++|+|. .|+.|+ .++| +...|+|+++++ ...|. .|+|.|+ | ...+.||.+
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~------~~~m~~~~~G~w~~~~~-l~~G~y~Ykf~vd------g---~~~~~DP~~ 66 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN------AIPMEREGDGLWVVTVE-LRPGRYEYKFVVD------G---EWVIVDPNA 66 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC------cccCEECCCCcEEEEEe-CCCCcEEEEEEEC------C---EEeeCCCCC
Confidence 58999999999999998 577764 3688 455699999997 56677 5777764 2 123589998
Q ss_pred cccccCC
Q 002079 295 RGLSSDG 301 (971)
Q Consensus 295 ~~ls~ng 301 (971)
.....++
T Consensus 67 ~~~~~~~ 73 (82)
T cd02861 67 AAYVDDG 73 (82)
T ss_pred CceecCC
Confidence 8765544
No 57
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.00 E-value=1.4e-05 Score=92.35 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=67.2
Q ss_pred hhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccccccCCCcccceeeecCccccchhhhhhcCCCCChHH
Q 002079 371 VSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVFFGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQ 450 (971)
Q Consensus 371 i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~ 450 (971)
.+||+..+++|+|.||++|+.+...
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~------------------------------------------------------- 49 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGE------------------------------------------------------- 49 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCC-------------------------------------------------------
Confidence 4689999999999999999987653
Q ss_pred HHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHH-hcCCEEEEEEeeccccCCCCCC
Q 002079 451 QAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALN-HIGLHVVLDVVYNHLQGSGPFD 522 (971)
Q Consensus 451 q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH-~~Gi~VIlDvVyNHt~~~g~~~ 522 (971)
.+--|...+....++.+..+ ....+.+++++||+.++ +.||.+|.|||+|||+...+|-
T Consensus 50 ------------S~S~YSI~Dql~~~~~~~~~-~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS~Wl 109 (423)
T PF14701_consen 50 ------------SNSPYSIYDQLKFDPDFFPP-GKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNSPWL 109 (423)
T ss_pred ------------CCCCccccchhhcChhhcCC-CccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCChHH
Confidence 23347777777777777653 22356789999999996 7899999999999998766553
No 58
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.84 E-value=0.00013 Score=72.23 Aligned_cols=97 Identities=21% Similarity=0.379 Sum_probs=63.8
Q ss_pred CCCCcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCc-
Q 002079 465 WGYNPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF- 543 (971)
Q Consensus 465 WGYdp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~- 543 (971)
|=|-|..-..+.+....| =|++||++||++||||+.=+-++ .. ... -+..|.|+.+ +++|.
T Consensus 27 ~ayYPt~~~~~hp~L~~D--------llge~v~a~h~~Girv~ay~~~~-~d-------~~~-~~~HPeW~~~-~~~G~~ 88 (132)
T PF14871_consen 27 YAYYPTKVGPRHPGLKRD--------LLGEQVEACHERGIRVPAYFDFS-WD-------EDA-AERHPEWFVR-DADGRP 88 (132)
T ss_pred EEEccCCCCcCCCCCCcC--------HHHHHHHHHHHCCCEEEEEEeee-cC-------hHH-HHhCCceeeE-CCCCCC
Confidence 335555544444555432 59999999999999999755554 21 111 1234888876 44554
Q ss_pred --------cccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 002079 544 --------IEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDL 584 (971)
Q Consensus 544 --------~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDl 584 (971)
.....||.|. ..+++++..++--++.|.+|||=||.
T Consensus 89 ~~~~~~~~~~~~~~c~ns-----~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 89 MRGERFGYPGWYTCCLNS-----PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred cCCCCcCCCCceecCCCc-----cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 1234577764 24478888888888899999999984
No 59
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.74 E-value=0.00018 Score=81.09 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCcccc--C-CCCCCCCCCCHHHHHHHHHHH
Q 002079 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEH--S-TCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~--s-tc~~d~a~e~~mv~k~i~Dsl 568 (971)
|..||+++|++||+|.-=+.++..... .+.+-+..|.++...+.+..... + ...-=+|+.+|+||++|++.+
T Consensus 72 L~~~I~eaHkrGlevHAW~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v 146 (311)
T PF02638_consen 72 LEFMIEEAHKRGLEVHAWFRVGFNAPD-----VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIV 146 (311)
T ss_pred HHHHHHHHHHcCCEEEEEEEeecCCCc-----hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHH
Confidence 999999999999999987755543221 11122334544433222222111 1 111236999999999999999
Q ss_pred HHHHHhCCccEEEEec
Q 002079 569 LCWAVNYKVDGFRFDL 584 (971)
Q Consensus 569 ~~W~~ey~IDGFRfDl 584 (971)
+--++.|.|||..||=
T Consensus 147 ~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 147 KEIVKNYDVDGIHLDD 162 (311)
T ss_pred HHHHhcCCCCeEEecc
Confidence 9999999999999993
No 60
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=97.63 E-value=0.00015 Score=90.52 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=73.4
Q ss_pred hcCCCeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHH
Q 002079 760 VSLKGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAA 839 (971)
Q Consensus 760 l~~~GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~ 839 (971)
+.+.|||.||||+|+++..-.| +|...++||..... . +..+ ..........+....
T Consensus 711 lT~PGVPdIYqG~E~wd~slvD------PDNRRpvd~~~r~~----------------~-L~~l-~~~~~~~~~~dg~~k 766 (879)
T PRK14511 711 LTSPGVPDVYQGTELWDFSLVD------PDNRRPVDFAARAA----------------A-LARL-DEGAELLPWDDGRIK 766 (879)
T ss_pred HCcCCCCcccCcccchhccCCC------CCCCCCCChHHHHH----------------H-Hhhc-ccccccccCCcchHH
Confidence 3445999999999999865543 45566788864210 0 0000 000000011222345
Q ss_pred HHHHHHHHHHHhcCccc-ccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCC---
Q 002079 840 LENFSDVLRIRYSSPLF-RLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPT--- 915 (971)
Q Consensus 840 ~~~~k~Li~LRks~paf-rlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~--- 915 (971)
..++++||+||+++|+| +.|++..+. . .|+ ....+++|.|..+. +.++||+|....
T Consensus 767 l~~~~~lL~lRr~~p~Lf~~G~y~pL~----~--~G~-~a~~v~AFaR~~~~-------------~~~vvvv~R~~~~l~ 826 (879)
T PRK14511 767 LLLIARALRLRRDRPELFAGGEYLPLE----V--SGP-HAGHVLAFARGGGG-------------GRALTVAPRLPAGLL 826 (879)
T ss_pred HHHHHHHHHHHHhCHHHhhCCceEEEE----e--cCC-CCCcEEEEEEecCC-------------ceEEEEecccccccc
Confidence 77899999999999988 458865432 1 222 23469999997642 678999987654
Q ss_pred ------cEEEEcCC
Q 002079 916 ------EVSFVSPA 923 (971)
Q Consensus 916 ------~~~~~lp~ 923 (971)
..++.||.
T Consensus 827 ~~~~W~dt~v~LP~ 840 (879)
T PRK14511 827 GAGGWGDTRLVLPE 840 (879)
T ss_pred ccCCcCCeEEeCCC
Confidence 45777775
No 61
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=96.65 E-value=0.0052 Score=55.64 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=44.7
Q ss_pred CCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCCCCCCceEeecceeccccccccCcceeecCcEEEE
Q 002079 878 VPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVI 957 (971)
Q Consensus 878 ~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~~~~~~~~l~~~~~~~~d~~v~~~~~~~~~g~~tV 957 (971)
..|+++|.|.+.. +.++|++|.+++++++++...+.. .+ ....+-.++++..+. -+..++|
T Consensus 8 ~~gvYvYfR~~~~-------------~tVmVilN~n~~~~~ldl~ry~E~----l~-~~~~~~diltg~~i~-l~~~l~l 68 (78)
T PF10438_consen 8 QDGVYVYFRYYDG-------------KTVMVILNKNDKEQTLDLKRYAEV----LG-GFTSAKDILTGKTID-LSKNLTL 68 (78)
T ss_dssp BTTEEEEEEEESS-------------EEEEEEEE-SSS-EEEEGGGGHHH----HT-T--EEEETTT--EEE--SSEEEE
T ss_pred cCCEEEEEEEcCC-------------CEEEEEEcCCCCCeEEcHHHHHHh----hC-CCcceEECCCCCEEe-cCCcEEE
Confidence 3689999998753 789999999999999998754210 00 011223355555554 3569999
Q ss_pred cCceEEEEE
Q 002079 958 PPRTTSVFV 966 (971)
Q Consensus 958 pa~S~aVfv 966 (971)
||+++.|++
T Consensus 69 ~~~~~~ILe 77 (78)
T PF10438_consen 69 PPKSVLILE 77 (78)
T ss_dssp -TTEEEEEE
T ss_pred CCCceEEEE
Confidence 999999986
No 62
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.42 E-value=0.0084 Score=72.23 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeecccc
Q 002079 476 KGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQ 516 (971)
Q Consensus 476 e~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~ 516 (971)
.-.||+ .++||..|++||+.||+||-|+|.+...
T Consensus 640 ptKYGs-------~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 640 PTKYGS-------VEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp -BTTB--------HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CCCCCC-------HHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 356888 4689999999999999999999999875
No 63
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.017 Score=67.13 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCcc-ccCCCC-CC--CCCCCHHHHHHHHHH
Q 002079 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFI-EHSTCM-NN--TASEHYMVERLIIDD 567 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~-~~stc~-~d--~a~e~~mv~k~i~Ds 567 (971)
+..||+.+|++||+|+-=+-+--++- ..|.+-+..|.+-.... .|.+ ..+... .+ +|+.||+++++|.+.
T Consensus 117 La~~I~~AHkr~l~v~aWf~~~~~a~-----~~s~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~l 190 (418)
T COG1649 117 LAFVIAEAHKRGLEVHAWFNPYRMAP-----PTSPLTKRHPHWLTTKR-PGWVYVRHQGWGKRVWLDPGIPEVQDFITSL 190 (418)
T ss_pred HHHHHHHHHhcCCeeeechhhcccCC-----CCChhHhhCCCCcccCC-CCeEEEecCCceeeeEeCCCChHHHHHHHHH
Confidence 89999999999999986554433221 12333333333322111 1111 111111 22 489999999999999
Q ss_pred HHHHHHhCCccEEEEecCCC
Q 002079 568 LLCWAVNYKVDGFRFDLMGH 587 (971)
Q Consensus 568 l~~W~~ey~IDGFRfDlm~~ 587 (971)
+.--++.|.|||.-||---.
T Consensus 191 v~evV~~YdvDGIQfDd~fy 210 (418)
T COG1649 191 VVEVVRNYDVDGIQFDDYFY 210 (418)
T ss_pred HHHHHhCCCCCceecceeec
Confidence 99999999999999986533
No 64
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=95.82 E-value=0.037 Score=51.04 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=44.4
Q ss_pred CCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCC--cEEEEcCCCCCCceEeecceeccccccccCc------ce-
Q 002079 878 VPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPT--EVSFVSPALQGKNLQLHPIQVKSVDEIVKNS------SY- 948 (971)
Q Consensus 878 ~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~--~~~~~lp~~~~~~~~l~~~~~~~~d~~v~~~------~~- 948 (971)
..+||+|.|.+.. . +.++||+|.+++ ...+.++-..+..|++.- .+.+....++ ..
T Consensus 8 ~~~v~af~R~~~~-----------~-~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vl---nsd~~~~~g~~~~~~~~v~ 72 (95)
T PF02806_consen 8 ENNVIAFERKDKG-----------D-DRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVL---NSDDEEYGGSGKGNSGEVT 72 (95)
T ss_dssp SSSEEEEEETTTE-----------T-TEEEEEEESSSS-EEEEEEECSSSSEEEEETT---TTTCEEEEESSCSETSEEE
T ss_pred CCCEEEEEEcCCC-----------C-CEEEEEEECCCcccceeEEeCCCCcceeeEEe---CCCccEECCcccccCceEE
Confidence 3579999997521 1 279999999998 444444433344565421 1111111111 11
Q ss_pred eecCc--EEEEcCceEEEEEEc
Q 002079 949 EANSG--CFVIPPRTTSVFVEP 968 (971)
Q Consensus 949 ~~~~g--~~tVpa~S~aVfv~~ 968 (971)
...+| +++|||+|++||..+
T Consensus 73 ~~~~g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 73 VDSNGRITVTLPPYSALVLKLK 94 (95)
T ss_dssp EETTSEEEEEESTTEEEEEEEE
T ss_pred EeeCCEEEEEECCCEEEEEEEc
Confidence 11234 799999999999754
No 65
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.76 E-value=0.042 Score=62.91 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccC-CCCCCC--CCccCCCCCcceeecCCCCccc-----cCCCCCCCCCCCHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQG-SGPFDD--NSVLDKVVPGYYLRRNSDGFIE-----HSTCMNNTASEHYMVER 562 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~-~g~~~~--~s~lDk~vP~YY~r~~~~G~~~-----~stc~~d~a~e~~mv~k 562 (971)
+.++||+.||++|++|++=|.. |... .++... ........-+|+.+ +.+|... +...+.-++..||.+++
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk-~~~G~~~~~~~~W~g~~~~~Dftnp~a~~ 163 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQ-RGVGKPYRIPGQWFPDSLMLDFTNPEAAQ 163 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEE-cCCCCccccccccCCCceeecCCCHHHHH
Confidence 3899999999999999984443 2221 111000 00000111256544 3344321 11233456899999999
Q ss_pred HHHHHHHHHHHhCCccEEEEecCC
Q 002079 563 LIIDDLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 563 ~i~Dsl~~W~~ey~IDGFRfDlm~ 586 (971)
...+-++.+++++|||||-+|...
T Consensus 164 Ww~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 164 WWMEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHHHHHHHHhcCCcEEEecCCC
Confidence 999999999989999999999664
No 66
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.61 E-value=0.063 Score=65.04 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCc-ccc---CCC----CCCCCCCCHH
Q 002079 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF-IEH---STC----MNNTASEHYM 559 (971)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~-~~~---stc----~~d~a~e~~m 559 (971)
...-.|+.|+++|+.||+++. ||=..+.-. ...-+.+.|.|+...+..+. ... ... .--.|+.|+.
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~---Ynmiyaa~~---~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~ 241 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMA---YNMIYAANN---NYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPE 241 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEE---EEESSEEET---T--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HH
T ss_pred hHHHHHHHHHHHHHcCcceeh---hHhhhcccc---CcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHH
Confidence 356799999999999999986 444332111 11124455666655444431 110 000 1234899999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEecCCCC
Q 002079 560 VERLIIDDLLCWAVNYKVDGFRFDLMGHI 588 (971)
Q Consensus 560 v~k~i~Dsl~~W~~ey~IDGFRfDlm~~~ 588 (971)
-+++|+..+...++.+|+|||.+|.+|..
T Consensus 242 WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 242 WQNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp HHHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred HHHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 99999999999999999999999999854
No 67
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=95.50 E-value=0.014 Score=71.65 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=35.3
Q ss_pred CCCCcCCCCCCCCCCCchhHHHHHHHHHHHh-cCCEEEEEEeeccccCCCCC
Q 002079 471 LWGVPKGSYASNPNGSCRTIEFRRMVQALNH-IGLHVVLDVVYNHLQGSGPF 521 (971)
Q Consensus 471 ~y~ape~sYgt~~~g~~ri~Efr~mV~alH~-~Gi~VIlDvVyNHt~~~g~~ 521 (971)
+|+.|++.|+- ++.++||+.||+ -||--|-|||||||+...+|
T Consensus 185 ~~~~~~~k~s~--------eDV~~lV~~l~rewnvlsi~DvV~NHtAnns~W 228 (1521)
T KOG3625|consen 185 DFSRPNRKYSF--------EDVGQLVEKLKREWNVLSITDVVYNHTANNSKW 228 (1521)
T ss_pred hhhccCCCCCH--------HHHHHHHHHHHhhcCeeeeehhhhhccccCCch
Confidence 45578888875 479999999994 59999999999999975444
No 68
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=95.37 E-value=0.027 Score=63.78 Aligned_cols=92 Identities=13% Similarity=0.197 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCcccc----CCCCCCCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~ 565 (971)
+.++||+.||++|++||+-+. .|.....+. .++. ..-+|+.+ +.+|.... .+-+.-++..||..++...
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i~-P~v~~~~~~----~y~~~~~~g~~vk-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~ 145 (317)
T cd06594 72 GLDELIEELKARGIRVLTYIN-PYLADDGPL----YYEEAKDAGYLVK-DADGSPYLVDFGEFDCGVLDLTNPAARDWFK 145 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEec-CceecCCch----hHHHHHHCCeEEE-CCCCCeeeeccCCCCceeeecCCHHHHHHHH
Confidence 389999999999999999543 454322110 0111 11245544 33343211 1223456899999999999
Q ss_pred HHHHHHHHhCCccEEEEecCCCC
Q 002079 566 DDLLCWAVNYKVDGFRFDLMGHI 588 (971)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDlm~~~ 588 (971)
+-++....++|||||=+|.-..+
T Consensus 146 ~~~~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 146 QVIKEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred HHHHHHhhhcCCcEEEecCCCCC
Confidence 99998877899999999976543
No 69
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=94.98 E-value=0.32 Score=52.76 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.3
Q ss_pred chhHHHHHHHHHHHhcCCEEEEEEeec
Q 002079 487 CRTIEFRRMVQALNHIGLHVVLDVVYN 513 (971)
Q Consensus 487 ~ri~Efr~mV~alH~~Gi~VIlDvVyN 513 (971)
..++.|+++|++|+++||+||+|+--.
T Consensus 59 ~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 59 TYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 457889999999999999999986543
No 70
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.86 E-value=0.057 Score=60.76 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCcc-c----cCCCCCCCCCCCHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFI-E----HSTCMNNTASEHYMVERLI 564 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~-~----~stc~~d~a~e~~mv~k~i 564 (971)
+.++||+.+|++|+++++=+-. +..... ..+.. ...+|+.+. .+|.. . ....+.-++..||.+++.+
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P-~i~~~s-----~~~~e~~~~g~~vk~-~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~ 143 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHP-FINTDS-----ENFREAVEKGYLVSE-PSGDIPALTRWWNGTAAVLDFTNPEAVDWF 143 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECC-eeCCCC-----HHHHhhhhCCeEEEC-CCCCCCcccceecCCcceEeCCCHHHHHHH
Confidence 4899999999999999997766 332211 11221 224566543 33311 1 1123445689999999999
Q ss_pred HHHHHHHHHhCCccEEEEecCC
Q 002079 565 IDDLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 565 ~Dsl~~W~~ey~IDGFRfDlm~ 586 (971)
.+-++..+.++|||||-+|...
T Consensus 144 ~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 144 LSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred HHHHHHHHHHhCCcEEEeCCCC
Confidence 9999999989999999999765
No 71
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=94.54 E-value=0.085 Score=59.30 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCccccCC----CCCCCCCCCHHHHHHHHH
Q 002079 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEHST----CMNNTASEHYMVERLIID 566 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~st----c~~d~a~e~~mv~k~i~D 566 (971)
.++||+.+|++|++|++-+.. |.....+ .++. ..++|+.+. .+|...... -+.-++..||++++++.+
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~-----~~~e~~~~g~~v~~-~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 140 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSP-----LFKEAAEKGYLVKK-PDGSVWQWDLWQPGMGIIDFTNPDACKWYKD 140 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCch-----hHHHHHHCCeEEEC-CCCCeeeecccCCCcccccCCCHHHHHHHHH
Confidence 899999999999999998864 4432211 1222 225676653 334432211 123458999999999999
Q ss_pred HHHHHHHhCCccEEEEecCCCCcH
Q 002079 567 DLLCWAVNYKVDGFRFDLMGHIMK 590 (971)
Q Consensus 567 sl~~W~~ey~IDGFRfDlm~~~~~ 590 (971)
-++.+. ++|||||-+|....+|.
T Consensus 141 ~~~~~~-~~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 141 KLKPLL-DMGVDCFKTDFGERIPT 163 (308)
T ss_pred HHHHHH-HhCCcEEecCCCCCCCc
Confidence 999877 58999999998876554
No 72
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=94.41 E-value=0.14 Score=58.12 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCc-cccCCCCCCCCCCCHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF-IEHSTCMNNTASEHYMVERLIIDD 567 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~-~~~stc~~d~a~e~~mv~k~i~Ds 567 (971)
|.++++|++.||++||.+|-=+|. ++...+-+..|.|.. ...+|. +.+.....=+|+-++++++++++.
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~---------FkD~~la~~~pe~av-~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~I 129 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVV---------FKDPVLAEAHPEWAV-KTKDGSVWRDNEGEAWVNPYSKEVWDYNIDI 129 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEE---------ecChHHhhhChhhEE-ECCCCCcccCCCCCccCCCCCHHHHHHHHHH
Confidence 568999999999999999999987 234445555677776 344443 333333334588999999999999
Q ss_pred HHHHHHhCCccEEEEecCCC
Q 002079 568 LLCWAVNYKVDGFRFDLMGH 587 (971)
Q Consensus 568 l~~W~~ey~IDGFRfDlm~~ 587 (971)
.+..+ ..|+|..-||-.-.
T Consensus 130 A~Eaa-~~GFdEIqfDYIRF 148 (316)
T PF13200_consen 130 AKEAA-KLGFDEIQFDYIRF 148 (316)
T ss_pred HHHHH-HcCCCEEEeeeeec
Confidence 99987 57999999998753
No 73
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.20 E-value=0.096 Score=59.32 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCC-CCcceeecCCCCcc-cc----CCCCCCCCCCCHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFI-EH----STCMNNTASEHYMVERLI 564 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~-vP~YY~r~~~~G~~-~~----stc~~d~a~e~~mv~k~i 564 (971)
+.++||+.||++|++|++-+.. +.....+ .++.. .-+|+.+.. +|.. .. ...+.-.+..||..++..
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P-~i~~~~~-----~y~e~~~~g~~v~~~-~g~~~~~~~~w~g~~~~~Dftnp~a~~ww 146 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKP-GLLQDHP-----RYKELKEAGAFIKPP-DGREPSIGQFWGGVGSFVDFTNPEGREWW 146 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCC-cccCCCH-----HHHHHHHCCcEEEcC-CCCCcceecccCCCeEeecCCChHHHHHH
Confidence 3899999999999999985543 3322111 11111 125664432 2221 11 111224688999999999
Q ss_pred HHHHHHHHHhCCccEEEEecCC
Q 002079 565 IDDLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 565 ~Dsl~~W~~ey~IDGFRfDlm~ 586 (971)
..-++.-+.+.|||||=+|...
T Consensus 147 ~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 147 KEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHHHHhcCCCcEEEecCCC
Confidence 9988777778999999999553
No 74
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=93.88 E-value=0.38 Score=56.25 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCC--CCCCCHHHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNN--TASEHYMVERLIIDDL 568 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d--~a~e~~mv~k~i~Dsl 568 (971)
-|+.|++.+|++||+.=|=+-.--++ ..|.+-+..|+|..+. ++. ....+.+. ++..||.|++++.+.+
T Consensus 105 Gl~~l~~~i~~~Gmk~GlW~ePe~v~------~~S~l~~~hPdw~l~~-~~~--~~~~~r~~~vLD~~~pev~~~l~~~i 175 (394)
T PF02065_consen 105 GLKPLADYIHSLGMKFGLWFEPEMVS------PDSDLYREHPDWVLRD-PGR--PPTLGRNQYVLDLSNPEVRDYLFEVI 175 (394)
T ss_dssp HHHHHHHHHHHTT-EEEEEEETTEEE------SSSCHCCSSBGGBTCC-TTS--E-ECBTTBEEB-TTSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCeEEEEecccccc------chhHHHHhCccceeec-CCC--CCcCcccceEEcCCCHHHHHHHHHHH
Confidence 39999999999999999988665443 2344555567776442 111 11122222 6889999999999999
Q ss_pred HHHHHhCCccEEEEecCCCC
Q 002079 569 LCWAVNYKVDGFRFDLMGHI 588 (971)
Q Consensus 569 ~~W~~ey~IDGFRfDlm~~~ 588 (971)
...++++|||.|.+|....+
T Consensus 176 ~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 176 DRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp HHHHHHTT-SEEEEE-TS-T
T ss_pred HHHHHhcCCCEEEeccccCC
Confidence 99999999999999998655
No 75
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=93.83 E-value=0.14 Score=58.11 Aligned_cols=89 Identities=11% Similarity=0.143 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCC-CCcceeecCCCCcc-c--cCCCCCCCCCCCHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFI-E--HSTCMNNTASEHYMVERLIID 566 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~-vP~YY~r~~~~G~~-~--~stc~~d~a~e~~mv~k~i~D 566 (971)
+.++||+.||++|++||+-+. .+..... ..++.. .-+|+.... +|.. . +..-+.-.+..||..++...+
T Consensus 67 dp~~mi~~L~~~G~kv~~~i~-P~v~~~~-----~~y~e~~~~g~~v~~~-~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 67 DPKAMVRELHEMNAELMISIW-PTFGPET-----ENYKEMDEKGYLIKTD-RGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred CHHHHHHHHHHCCCEEEEEec-CCcCCCC-----hhHHHHHHCCEEEEcC-CCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 378999999999999999553 3343211 111111 125655432 3321 1 111123468899999998887
Q ss_pred HHHHHHHhCCccEEEEecCC
Q 002079 567 DLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 567 sl~~W~~ey~IDGFRfDlm~ 586 (971)
-++.-+.++|||||=+|.-.
T Consensus 140 ~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 140 QLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred HHHHHhhcCCCcEEEecCCC
Confidence 77766678999999999875
No 76
>PLN02960 alpha-amylase
Probab=93.16 E-value=0.093 Score=66.02 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCccEEeC-CeeEEEEEcCCCCeEEEE-EecCCCCCCCc-eEEec-ccCCCEEEEEeCC
Q 002079 209 PLGALYAE-ETVSLYLWAPTAQSVSAC-IYRDPLGGNPL-EVVQL-KENDGVWSIKGPK 263 (971)
Q Consensus 209 ~LGa~~~~-~~v~F~vWAPtA~~V~L~-ly~~~~~~~~~-~~~~M-~~~~GvW~v~~~~ 263 (971)
.||++... .+|.|++|||.|+.|+|+ .|+.|+..+.. ++=-| +.+-|+|.+.++.
T Consensus 119 ~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~ 177 (897)
T PLN02960 119 LLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILED 177 (897)
T ss_pred HhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEech
Confidence 58999876 499999999999999999 89988762211 11123 5678999999974
No 77
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=93.16 E-value=0.17 Score=57.39 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccC-CCCCcceeecCCCCccc--cCCC--CCCCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLD-KVVPGYYLRRNSDGFIE--HSTC--MNNTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lD-k~vP~YY~r~~~~G~~~--~stc--~~d~a~e~~mv~k~i~ 565 (971)
+.++||+.||++|++|++=+.. |...+.. ...+. ...-+||.+ +.+|... ...+ +.-.+..||..++...
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~P-~i~~~~~---~~~~~~~~~~~~~v~-~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~ 139 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVDP-GIRVDQN---YSPFLSGMDKGKFCE-IESGELFVGKMWPGTTVYPDFTNPDTREWWA 139 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeec-cccCCCC---ChHHHHHHHCCEEEE-CCCCCeEEEeecCCCccccCCCChHHHHHHH
Confidence 3789999999999999986543 3322110 11111 112356654 3334321 1111 1235889999999999
Q ss_pred HHHHHHHHhCCccEEEEecCC
Q 002079 566 DDLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDlm~ 586 (971)
+-++..+.++|||||=+|.-.
T Consensus 140 ~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 140 GLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHHHHhhcCCCceEEeeCCC
Confidence 999988888999999999654
No 78
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=93.08 E-value=0.23 Score=56.81 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCcccc----CCCCCCCCCCCHHHHHHHHHH
Q 002079 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLIIDD 567 (971)
Q Consensus 493 r~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~Ds 567 (971)
++||+.||++|+||++=+. -|............++. ..-+||.+ +.+|.... ...+.-.+..||..++...+-
T Consensus 69 ~~mi~~L~~~G~k~~~~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 146 (339)
T cd06602 69 PEFVDELHANGQHYVPILD-PAISANEPTGSYPPYDRGLEMDVFIK-NDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDE 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEe-CccccCcCCCCCHHHHHHHHCCeEEE-CCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHH
Confidence 9999999999999999754 33322100001112221 12366655 34443211 122334588999999999999
Q ss_pred HHHHHHhCCccEEEEecCCC
Q 002079 568 LLCWAVNYKVDGFRFDLMGH 587 (971)
Q Consensus 568 l~~W~~ey~IDGFRfDlm~~ 587 (971)
++..+.++|||||=+|....
T Consensus 147 ~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 147 IKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred HHHHHhcCCCcEEEecCCCC
Confidence 99999889999999997653
No 79
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=92.33 E-value=0.38 Score=43.49 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=36.5
Q ss_pred eeEEEEEcCCCCeEEEE-EecCCCCCCCceEEec-ccCCCEEEEEeCCCCCCc-eEEEEEE
Q 002079 218 TVSLYLWAPTAQSVSAC-IYRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEGC-YYVYEVS 275 (971)
Q Consensus 218 ~v~F~vWAPtA~~V~L~-ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G~-~Y~Y~v~ 275 (971)
.|+|+..+ .|++|.|. -|+.|.. .+|| +..+| |++.++ ...|. .|+|.|+
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~~W~~-----~~pm~~~~~~-~~~~~~-L~~g~y~YkF~Vd 55 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFDNWKK-----KIPLEKSGKG-FSATLR-LPPGKYQYKFIVD 55 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcCCCCc-----cccceECCCC-cEEEEE-cCCCCEEEEEEEC
Confidence 48999998 89999999 6777642 4789 44455 999885 45565 3777774
No 80
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=92.13 E-value=0.21 Score=42.40 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=23.7
Q ss_pred CEEEEEEeCCCCcEEEEcCCCCCCceEeecceeccccccccCcceeecCcEEEEcCceEEEEEE
Q 002079 904 SYIVVIFNSSPTEVSFVSPALQGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFVE 967 (971)
Q Consensus 904 ~~ivVv~N~s~~~~~~~lp~~~~~~~~l~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVfv~ 967 (971)
..++.++|.+.+++++++|.. +. .++.+... .+.++|+|+.++|+.+
T Consensus 12 ~~y~F~~N~s~~~~~v~l~~~-~~-------------dll~g~~~---~~~~~L~p~~v~Vl~~ 58 (58)
T PF08533_consen 12 GRYLFLLNFSDEPQTVTLPES-YT-------------DLLTGETV---SGGLTLPPYGVRVLKE 58 (58)
T ss_dssp TTEEEEEE-SSS-EE----TT--E-------------EEES----------SEE-TTEEEEEE-
T ss_pred CEEEEEEECCCCCEEEEcCCC-ce-------------ecccCcce---eeEEEECCCEEEEEEC
Confidence 468999999999999999642 11 11221111 3459999999999974
No 81
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=91.89 E-value=0.31 Score=55.25 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCC-CCcceeecCCCCccccC----CCCCCCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKV-VPGYYLRRNSDGFIEHS----TCMNNTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~-vP~YY~r~~~~G~~~~s----tc~~d~a~e~~mv~k~i~ 565 (971)
+.++||+.||++|++|++=+.. +.....+ .++.. .-+|+.....+|..... ..+.-.+..||+.++...
T Consensus 71 dp~~mi~~L~~~G~k~~~~v~P-~v~~~~~-----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~ 144 (317)
T cd06598 71 DPAGMIADLAKKGVKTIVITEP-FVLKNSK-----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFH 144 (317)
T ss_pred CHHHHHHHHHHcCCcEEEEEcC-cccCCch-----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHH
Confidence 3789999999999999998742 2222111 11111 12554443444432111 112345778999999999
Q ss_pred HHHHHHHHhCCccEEEEecCC
Q 002079 566 DDLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDlm~ 586 (971)
+.++.. .++|||||=+|.-.
T Consensus 145 ~~~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 145 DNYKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHHHHh-hhCCccEEEecCCC
Confidence 998887 67999999999764
No 82
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=91.23 E-value=0.88 Score=43.12 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=42.4
Q ss_pred CCccEEeCCeeEEEEEcCC--CCeEEEEEecCCCCCCCceEEecc--c---CCCEEEEEeCCCCCCceEEEEEE
Q 002079 209 PLGALYAEETVSLYLWAPT--AQSVSACIYRDPLGGNPLEVVQLK--E---NDGVWSIKGPKSWEGCYYVYEVS 275 (971)
Q Consensus 209 ~LGa~~~~~~v~F~vWAPt--A~~V~L~ly~~~~~~~~~~~~~M~--~---~~GvW~v~~~~~~~G~~Y~Y~v~ 275 (971)
|+|| +.++|||+++. +++|.|.+.++..... ...++|+ . ....|+++++......+|.|+|.
T Consensus 12 p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~~-~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l~ 80 (116)
T cd02857 12 PYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKGE-EEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFELV 80 (116)
T ss_pred EcCC----CEEEEEEEecCCCccEEEEEEECCCCCCC-ceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEEE
Confidence 7887 78999999885 5788888876531111 2467882 2 23569999986554446889885
No 83
>PRK10426 alpha-glucosidase; Provisional
Probab=90.99 E-value=1.3 Score=55.13 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCcccc----CCCCCCCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~ 565 (971)
+.++||+.||++|++||+=+-. |..... ..++. ..-+|+.. +.+|.... ...|.-.+..||..++...
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P-~v~~~~-----~~y~e~~~~gy~vk-~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~ 342 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINP-YLASDG-----DLCEEAAEKGYLAK-DADGGDYLVEFGEFYAGVVDLTNPEAYEWFK 342 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-ccCCCC-----HHHHHHHHCCcEEE-CCCCCEEEeEecCCCceeecCCCHHHHHHHH
Confidence 3899999999999999988654 222111 11111 11256654 33443211 1123456899999999999
Q ss_pred HHHHHHHHhCCccEEEEecCCCCc
Q 002079 566 DDLLCWAVNYKVDGFRFDLMGHIM 589 (971)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDlm~~~~ 589 (971)
+-++..+.++|||||=.|.-..+|
T Consensus 343 ~~~~~~~~~~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 343 EVIKKNMIGLGCSGWMADFGEYLP 366 (635)
T ss_pred HHHHHHHhhcCCCEEeeeCCCCCC
Confidence 988878888999999999765443
No 84
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=90.02 E-value=1.9 Score=47.07 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHH
Q 002079 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~ 569 (971)
.+++++|+.+|++|+||++=+-.+|.... + ....++.-++-++++++
T Consensus 51 ~~~~~~i~~l~~kG~KVl~sigg~~~~~~---------------~------------------~~~~~~~~~~~fa~~l~ 97 (255)
T cd06542 51 TNKETYIRPLQAKGTKVLLSILGNHLGAG---------------F------------------ANNLSDAAAKAYAKAIV 97 (255)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCC---------------c------------------cccCCHHHHHHHHHHHH
Confidence 57899999999999999999877664210 0 00123345666778888
Q ss_pred HHHHhCCccEEEEecCC
Q 002079 570 CWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 570 ~W~~ey~IDGFRfDlm~ 586 (971)
.++++||+||+-+|.-.
T Consensus 98 ~~v~~yglDGiDiD~E~ 114 (255)
T cd06542 98 DTVDKYGLDGVDFDDEY 114 (255)
T ss_pred HHHHHhCCCceEEeeee
Confidence 89999999999999753
No 85
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=89.83 E-value=1 Score=51.97 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 002079 493 RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWA 572 (971)
Q Consensus 493 r~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~ 572 (971)
.++|..+|++|++|++..-+. . ....++..|+-++++++-++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~----------~----------------------------~~l~~~~~R~~fi~siv~~~ 108 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVP----------L----------------------------EQISNPTYRTQWIQQKVELA 108 (358)
T ss_pred HHHHHHHHHcCCEEEEECccC----------H----------------------------HHcCCHHHHHHHHHHHHHHH
Confidence 488999999999999751000 0 01346778999999999999
Q ss_pred HhCCccEEEEecCCC
Q 002079 573 VNYKVDGFRFDLMGH 587 (971)
Q Consensus 573 ~ey~IDGFRfDlm~~ 587 (971)
++||+||+-+|--.-
T Consensus 109 ~~~gfDGIdIDwE~p 123 (358)
T cd02875 109 KSQFMDGINIDIEQP 123 (358)
T ss_pred HHhCCCeEEEcccCC
Confidence 999999999998643
No 86
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=89.23 E-value=2.4 Score=47.99 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHH
Q 002079 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~ 569 (971)
.++++-|+.||++|++|++=+ .|. .. .. ....+.-++.+++++.
T Consensus 60 ~~~~~~i~~~q~~G~KVllSi-------GG~-~~-------------------~~---------~~~~~~~~~~fa~sl~ 103 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISI-------GGA-NG-------------------HV---------DLNHTAQEDNFVDSIV 103 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEE-------eCC-CC-------------------cc---------ccCCHHHHHHHHHHHH
Confidence 478999999999999999875 121 10 00 0124456788999999
Q ss_pred HHHHhCCccEEEEecCCCCcH----HHHHHHHHHHHhhc
Q 002079 570 CWAVNYKVDGFRFDLMGHIMK----STMMKAKHALHSLT 604 (971)
Q Consensus 570 ~W~~ey~IDGFRfDlm~~~~~----~~~~~~~~al~~i~ 604 (971)
.++++|++||+-||.-.-... .........|+++.
T Consensus 104 ~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr 142 (312)
T cd02871 104 AIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLK 142 (312)
T ss_pred HHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHH
Confidence 999999999999999764322 22334444555544
No 87
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=89.14 E-value=0.58 Score=52.43 Aligned_cols=83 Identities=12% Similarity=-0.018 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (971)
+.++||+.||++|++||+-|........+ ...++. +.+ +......+ ..+.-.+..||..++...+.++.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~----~~~y~~-----~~~-~~~~~~~~-~~~~~~D~tnp~a~~~w~~~~~~ 143 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAH----EDQYPE-----MAK-ALGVDPAT-EGPILFDLTNPKFMDAYFDNVHR 143 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCC----cHHHHH-----HHH-hcCCCccc-CCeEEecCCCHHHHHHHHHHHHH
Confidence 48999999999999999887553211100 000110 000 00000000 11123478899999877777777
Q ss_pred HHHhCCccEEEEec
Q 002079 571 WAVNYKVDGFRFDL 584 (971)
Q Consensus 571 W~~ey~IDGFRfDl 584 (971)
-+.++|||||=.|.
T Consensus 144 ~~~~~Gidg~W~D~ 157 (292)
T cd06595 144 PLEKQGVDFWWLDW 157 (292)
T ss_pred HHHhcCCcEEEecC
Confidence 77789999999995
No 88
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=89.14 E-value=0.31 Score=57.38 Aligned_cols=94 Identities=22% Similarity=0.239 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCcccc----CCCCCCCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~ 565 (971)
++++|++.||++|++|++-+... ...... ....++. ...+|+.+ +.+|.... ...+.-++..|+..+++..
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P~-v~~~~~--~~~~~~~~~~~~~~v~-~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~ 159 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHPF-VSNDSP--DYENYDEAKEKGYLVK-NPDGSPYIGRVWPGKGGFIDFTNPEARDWWK 159 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEESE-EETTTT--B-HHHHHHHHTT-BEB-CTTSSB-EEEETTEEEEEB-TTSHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeecc-cCCCCC--cchhhhhHhhcCceee-cccCCcccccccCCcccccCCCChhHHHHHH
Confidence 48999999999999999988773 322211 0011111 11256554 34442111 1113345789999999999
Q ss_pred HHHHHHHHhCCccEEEEecCCCC
Q 002079 566 DDLLCWAVNYKVDGFRFDLMGHI 588 (971)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDlm~~~ 588 (971)
+-++..+..+|||||-+|.....
T Consensus 160 ~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 160 EQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHHhccCCceEEeecCCcc
Confidence 99999998889999999995433
No 89
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=88.91 E-value=0.94 Score=56.45 Aligned_cols=94 Identities=20% Similarity=0.123 Sum_probs=62.2
Q ss_pred cccCCCCCCccEEeCCeeEEEEEcCCCCeEEEEEecCCCCC--CCceEEec-ccCCCEEEEEeCCCCCCceEEEEEEEec
Q 002079 202 ELFSYDGPLGALYAEETVSLYLWAPTAQSVSACIYRDPLGG--NPLEVVQL-KENDGVWSIKGPKSWEGCYYVYEVSVYH 278 (971)
Q Consensus 202 ~~y~~~~~LGa~~~~~~v~F~vWAPtA~~V~L~ly~~~~~~--~~~~~~~M-~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~ 278 (971)
++|.+++.+|+ .|++|+|.|+.+++..|+..+.. +...++.| +-..|.|...+.+......|.+....++
T Consensus 59 ~~~~~~~~~G~-------iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~ 131 (697)
T COG1523 59 RLYPYDGELGA-------IWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYG 131 (697)
T ss_pred cccccCCcccc-------EEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCcccccccccc
Confidence 66888999998 89999999999999999854322 23356777 6788999999987765443333222111
Q ss_pred -CCCccccceeecCccccccccCCC
Q 002079 279 -PSALQIEKCYANDPYARGLSSDGR 302 (971)
Q Consensus 279 -p~~g~~~~~~vtDPYa~~ls~ng~ 302 (971)
..+.........|||++++..+..
T Consensus 132 ~~~~~~~~~~~~~~~~~Ksvv~~~~ 156 (697)
T COG1523 132 YQITNLSPDRDSADPYPKSVVIDPL 156 (697)
T ss_pred ccccccCccccccccCCceEEeccc
Confidence 001111124577888888876553
No 90
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=88.78 E-value=2.9 Score=52.11 Aligned_cols=35 Identities=14% Similarity=-0.135 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCC
Q 002079 553 TASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGH 587 (971)
Q Consensus 553 ~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~ 587 (971)
+++.+|++++.|.+...-.++.|.|||.-||-=..
T Consensus 435 l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~ 469 (671)
T PRK14582 435 LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAV 469 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEeccccc
Confidence 67789999999999999999999999999975433
No 91
>PRK10658 putative alpha-glucosidase; Provisional
Probab=88.71 E-value=0.74 Score=57.36 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCcccc----CCCCCCCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEH----STCMNNTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~----stc~~d~a~e~~mv~k~i~ 565 (971)
+.++||+.||++|++|++=+.. +.... ...++. ..-+|+.+ +++|.... ...+.-.+..||..++...
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~-----s~~f~e~~~~gy~vk-~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~ 398 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQK-----SPLFKEGKEKGYLLK-RPDGSVWQWDKWQPGMAIVDFTNPDACKWYA 398 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCC-----chHHHHHHHCCeEEE-CCCCCEeeeeecCCCceeecCCCHHHHHHHH
Confidence 4789999999999999986543 22211 111211 12367655 44555321 2233456899999999999
Q ss_pred HHHHHHHHhCCccEEEEecCC
Q 002079 566 DDLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDlm~ 586 (971)
+-++.++ ++|||||-.|...
T Consensus 399 ~~~~~l~-d~Gvdgfw~D~gE 418 (665)
T PRK10658 399 DKLKGLL-DMGVDCFKTDFGE 418 (665)
T ss_pred HHHHHHH-hcCCcEEEecCCc
Confidence 9999866 6899999999654
No 92
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=88.61 E-value=2.3 Score=46.49 Aligned_cols=63 Identities=19% Similarity=0.400 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (971)
++..+++++|+.|++|++=| -++... .+. ....++..|+-+++++..
T Consensus 47 ~~~~~~~~~~~~~~kvl~si-gg~~~~----------------~~~----------------~~~~~~~~r~~fi~~lv~ 93 (253)
T cd06545 47 ELNSVVNAAHAHNVKILISL-AGGSPP----------------EFT----------------AALNDPAKRKALVDKIIN 93 (253)
T ss_pred HHHHHHHHHHhCCCEEEEEE-cCCCCC----------------cch----------------hhhcCHHHHHHHHHHHHH
Confidence 68899999999999999854 232110 000 023467788889999999
Q ss_pred HHHhCCccEEEEecCC
Q 002079 571 WAVNYKVDGFRFDLMG 586 (971)
Q Consensus 571 W~~ey~IDGFRfDlm~ 586 (971)
++++|++||.-+|.-.
T Consensus 94 ~~~~~~~DGIdiDwE~ 109 (253)
T cd06545 94 YVVSYNLDGIDVDLEG 109 (253)
T ss_pred HHHHhCCCceeEEeec
Confidence 9999999999999864
No 93
>smart00632 Aamy_C Aamy_C domain.
Probab=88.18 E-value=2.3 Score=38.48 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=39.3
Q ss_pred cEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEEEEcCC-CCCCceEeecceeccccccccCcceeec-Cc--EE
Q 002079 880 GVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVSFVSPA-LQGKNLQLHPIQVKSVDEIVKNSSYEAN-SG--CF 955 (971)
Q Consensus 880 gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~~~lp~-~~~~~~~l~~~~~~~~d~~v~~~~~~~~-~g--~~ 955 (971)
.+|+|+|. +..+|+||.+...++..+.. +....|. .+... ...+..+.+. +| ++
T Consensus 9 ~~laF~Rg----------------~~g~VaiN~~~~~~~~~~~t~lp~G~Y~--d~l~g----~~~g~~v~V~~~G~~~~ 66 (81)
T smart00632 9 NQIAFERG----------------SKGFVAINRSDSDLTITLQTSLPAGTYC--DVISG----LCTGKSVTVGSNGIATF 66 (81)
T ss_pred eEEEEECC----------------CeEEEEEECCCCceEEEEeecCCCcceE--EEecC----cccCCEEEECCCCEEEE
Confidence 39999993 35688999998888777643 2222232 11110 1112223333 34 89
Q ss_pred EEcCce-EEEEEE
Q 002079 956 VIPPRT-TSVFVE 967 (971)
Q Consensus 956 tVpa~S-~aVfv~ 967 (971)
+|||++ ++|++.
T Consensus 67 ~l~~~~~v~i~~~ 79 (81)
T smart00632 67 TLPAGGAVAIHVD 79 (81)
T ss_pred EECCCCeEEEEEc
Confidence 999999 777774
No 94
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=86.61 E-value=1.3 Score=50.67 Aligned_cols=90 Identities=17% Similarity=0.022 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCcc-c---cCCCCCCCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFI-E---HSTCMNNTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~-~---~stc~~d~a~e~~mv~k~i~ 565 (971)
+.++||+.||++|++||+-+..--....+ ...++. ..-+|+.+. .+|.. . +...+.-.+..||.+++...
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~v~~~~~----~~~y~e~~~~g~~vk~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~ 139 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPHIKRDDG----YYVYKEAKDKGYLVKN-SDGGDFEGWCWPGSSSWPDFLNPEVRDWWA 139 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCC----CHHHHHHHHCCeEEEC-CCCCEEEEEECCCCcCCccCCChhHHHHHH
Confidence 37999999999999999987532211110 011111 112666543 33321 1 12234456899999999999
Q ss_pred HHHHHHHH--hCCccEEEEecC
Q 002079 566 DDLLCWAV--NYKVDGFRFDLM 585 (971)
Q Consensus 566 Dsl~~W~~--ey~IDGFRfDlm 585 (971)
+-++.... ..+||||=+|.-
T Consensus 140 ~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 140 SLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHHHHhhcccCCCceEEeccC
Confidence 99988875 468999999854
No 95
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=85.32 E-value=1.6 Score=49.91 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCccccCCC----CCCCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEHSTC----MNNTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~stc----~~d~a~e~~mv~k~i~ 565 (971)
+.++||+.||++|++|++=+.. |..... ....++. ..-+||.+. .+|......| +.-.+..||..++...
T Consensus 65 dp~~m~~~l~~~g~~~~~~~~P-~v~~~~---~~~~~~e~~~~g~~v~~-~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~ 139 (339)
T cd06604 65 DPKELIKELHEQGFKVVTIIDP-GVKVDP---GYDVYEEGLENDYFVKD-PDGELYIGRVWPGLSAFPDFTNPKVREWWG 139 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEEeC-ceeCCC---CChHHHHHHHCCeEEEC-CCCCEEEEEecCCCccccCCCChHHHHHHH
Confidence 3799999999999999976543 322110 0111111 113566543 3443211111 2235889999999999
Q ss_pred HHHHHHHHhCCccEEEEecCC
Q 002079 566 DDLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDlm~ 586 (971)
+.++... ++|||||=+|...
T Consensus 140 ~~~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 140 SLYKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred HHHHHHh-hCCCceEeecCCC
Confidence 9888876 7999999999764
No 96
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=84.54 E-value=2.1 Score=36.70 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=34.3
Q ss_pred EEEEEeCCCCcEEEEcCCC-CCCceEeecceeccccccccCcceeecCcEEEEcCceEEEE
Q 002079 906 IVVIFNSSPTEVSFVSPAL-QGKNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVF 965 (971)
Q Consensus 906 ivVv~N~s~~~~~~~lp~~-~~~~~~l~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVf 965 (971)
|+|+||.++..++..+... ++ -++++......+.+...+ ..-+.|.|||+|+.|+
T Consensus 1 L~v~iN~~~~~k~~~Vgt~~ag--~~~~D~tGn~~~~vtid~---dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 1 LAVYINGSAGWKRMWVGTNWAG--KTFYDYTGNSSETVTIDE---DGWGEFPVPPGSVSVW 56 (57)
T ss_dssp EEEEEE-SSSEEEEEEEGGGTT--EEEEETTSSSSSEEEE-T---TSEEEEEE-TTEEEEE
T ss_pred CEEEEeCCCCeEEEEEccccCC--CEEEEccCCCCCeEEECC---CeEEEEEECCCEEEEe
Confidence 4677799999999988764 33 345555555444432211 1235899999999997
No 97
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=82.62 E-value=3.8 Score=47.16 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=60.0
Q ss_pred CCCCC-CcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCC
Q 002079 463 YNWGY-NPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSD 541 (971)
Q Consensus 463 ~nWGY-dp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~ 541 (971)
.+|-| |..-|+. +++++-|. ...++++|++|++|+-=+.+.... + ...++.+
T Consensus 28 ~~W~yvD~fvyws--h~~~~iPp--------~~~idaAHknGV~Vlgti~~e~~~--~----~~~~~~l----------- 80 (339)
T cd06547 28 SYWQYVDTFVYFS--HSAVTIPP--------ADWINAAHRNGVPVLGTFIFEWTG--Q----VEWLEDF----------- 80 (339)
T ss_pred cchhhhheeeccc--CccccCCC--------cHHHHHHHhcCCeEEEEEEecCCC--c----hHHHHHH-----------
Confidence 35666 4555553 45555553 478899999999999866544320 0 0011111
Q ss_pred CccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC-cHHHHHHHHHHHHhhc
Q 002079 542 GFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI-MKSTMMKAKHALHSLT 604 (971)
Q Consensus 542 G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~-~~~~~~~~~~al~~i~ 604 (971)
-..++..+..+++-|+.-++.||+||+=+|.=... +.+.+..+++.++.+.
T Consensus 81 ------------L~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~ 132 (339)
T cd06547 81 ------------LKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRYLK 132 (339)
T ss_pred ------------hccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHHHH
Confidence 00002233456777888889999999999988776 4444444444444443
No 98
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=81.74 E-value=2.8 Score=53.22 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccC-CCCCcceeecCCCCccccCCCCC----CCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLD-KVVPGYYLRRNSDGFIEHSTCMN----NTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lD-k~vP~YY~r~~~~G~~~~stc~~----d~a~e~~mv~k~i~ 565 (971)
+-|+||+.+|++||++|.=+...=-... + .++ -+.-||+.+. ++|......|++ -.+..||.+++...
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~i~~d~-~-----~~~e~~~~Gy~~k~-~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~ 394 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPYIKQDS-P-----LFKEAIEKGYFVKD-PDGEIYQADFWPGNSAFPDFTNPDAREWWA 394 (772)
T ss_pred CHHHHHHHHHhcCceEEEEeccccccCC-c-----hHHHHHHCCeEEEC-CCCCEeeecccCCcccccCCCCHHHHHHHH
Confidence 3679999999999999987654322111 1 111 1123777654 447665555544 45899999999999
Q ss_pred HHHHHHHHhCCccEEEEecCCCCc
Q 002079 566 DDLLCWAVNYKVDGFRFDLMGHIM 589 (971)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDlm~~~~ 589 (971)
.....-+.++|||||=.|.-...+
T Consensus 395 ~~~~~~l~d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 395 SDKKKNLLDLGVDGFWNDMNEPEP 418 (772)
T ss_pred HHHHhHHHhcCccEEEccCCCCcc
Confidence 655454568999999998765443
No 99
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=81.02 E-value=6 Score=45.79 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (971)
.|.++|+.++++||+|||-+. .++. -.|. .++ .|.-- ..+.+|..............+|.+++++...++.
T Consensus 48 ~lD~~l~~a~~~Gi~viL~~~-~~~~--P~Wl----~~~-~Pe~~-~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~ 118 (374)
T PF02449_consen 48 WLDRVLDLAAKHGIKVILGTP-TAAP--PAWL----YDK-YPEIL-PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRA 118 (374)
T ss_dssp HHHHHHHHHHCTT-EEEEEEC-TTTS---HHH----HCC-SGCCC--B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCeEEEEec-cccc--ccch----hhh-ccccc-ccCCCCCcCccCCccccchhHHHHHHHHHHHHHH
Confidence 589999999999999999776 2221 0010 111 12111 1233454444444455567889998888888777
Q ss_pred HHHhCC----ccEEEEecC-C---CCcHHHHHHHHHHHHhhc
Q 002079 571 WAVNYK----VDGFRFDLM-G---HIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 571 W~~ey~----IDGFRfDlm-~---~~~~~~~~~~~~al~~i~ 604 (971)
.++.|+ |-|+-+|-= + .........+++-|++..
T Consensus 119 l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY 160 (374)
T PF02449_consen 119 LAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKY 160 (374)
T ss_dssp HHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHH
T ss_pred HHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHh
Confidence 776665 779988864 2 223334455566665544
No 100
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=79.77 E-value=2.3 Score=46.88 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (971)
+.++||+.||++|++|++-+... +++...+-++.
T Consensus 67 dp~~~i~~l~~~g~~~~~~~~P~----------------------------------------------v~~w~~~~~~~ 100 (265)
T cd06589 67 NPKSMIDELHDNGVKLVLWIDPY----------------------------------------------IREWWAEVVKK 100 (265)
T ss_pred CHHHHHHHHHHCCCEEEEEeChh----------------------------------------------HHHHHHHHHHH
Confidence 38999999999999999965331 14455555555
Q ss_pred HHHhCCccEEEEecCCC
Q 002079 571 WAVNYKVDGFRFDLMGH 587 (971)
Q Consensus 571 W~~ey~IDGFRfDlm~~ 587 (971)
...++|||||=+|...-
T Consensus 101 ~~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 101 LLVSLGVDGFWTDMGEP 117 (265)
T ss_pred hhccCCCCEEeccCCCC
Confidence 55689999999997643
No 101
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=79.21 E-value=3.8 Score=49.47 Aligned_cols=171 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEEe-eccccCCCCCCCCCccCCCC-----CcceeecCCCCccccCCCCCCCCCCCHHH--H
Q 002079 490 IEFRRMVQALNHIGLHVVLDVV-YNHLQGSGPFDDNSVLDKVV-----PGYYLRRNSDGFIEHSTCMNNTASEHYMV--E 561 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDvV-yNHt~~~g~~~~~s~lDk~v-----P~YY~r~~~~G~~~~stc~~d~a~e~~mv--~ 561 (971)
++++++.+.++++||.+|.|+- +=+-.+.-.|.....|.... |+|| +++|+ .++.+-.|++.-.- -
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~f---s~~GQ---~WG~P~y~w~~l~~~gy 265 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYF---SPTGQ---NWGNPPYNWDALKEDGY 265 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSS---SSS-E---EEEEE-B-HHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCC---Ccccc---cCCCCCcCHHHHHHcCC
Q ss_pred HHHHHHHHHHHHhCCccEEEEecC------------------CCCcHHHHHHHHHHHHhhcccccCCCCC-CcEEecccc
Q 002079 562 RLIIDDLLCWAVNYKVDGFRFDLM------------------GHIMKSTMMKAKHALHSLTKEIHGVDGS-SIYIYGEGW 622 (971)
Q Consensus 562 k~i~Dsl~~W~~ey~IDGFRfDlm------------------~~~~~~~~~~~~~al~~i~p~~~~~~~~-~~~l~GEgW 622 (971)
+.+++-+++=++ .+|+.|+|-. |.--+.--.++.+.|.... . ++.++||
T Consensus 266 ~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~--------~r~~~vigE-- 333 (496)
T PF02446_consen 266 RWWIDRLRANMR--LFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALES--------GRDCLVIGE-- 333 (496)
T ss_dssp HHHHHHHHHHHC--C-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHH--------S-S-EEEE---
T ss_pred HHHHHHHHHHHH--hCCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHc--------CCCCcEEEe--
Q ss_pred cccccccccccccccccccCCCcccccchHHHHHHcCCCCCCCCcccccccccccCCCCCCCCChHHHHHHHHHHHhhHH
Q 002079 623 DFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLGGSPFGPPLQQGFVTGLLLQPNGHDHGTKAVEEQMLAAAKDHIQ 702 (971)
Q Consensus 623 d~gev~~~~~~~~a~q~~~~gtgig~fnDrlRdavrgg~~F~~~~~~gf~~G~~~~~n~~~~g~~~~~~~~l~~~~d~i~ 702 (971)
..|+.-+.+|+.++.-+..
T Consensus 334 ----------------------DLG~vp~~v~~~l~~~gi~--------------------------------------- 352 (496)
T PF02446_consen 334 ----------------------DLGTVPPEVRELLAELGIP--------------------------------------- 352 (496)
T ss_dssp -----------------------TSS--HHHHHHHHHTT-----------------------------------------
T ss_pred ----------------------ecCCCcHHHHHHHHHcCCC---------------------------------------
Q ss_pred hhhcccchhhhccc-cCCcccccccccccCCCCccccCCCCceeeeccccccccH
Q 002079 703 VGLAANLRDFQLTN-SEGNKVKGSEVKTYDGTPVAYALCPTETISYVSAHDNETL 756 (971)
Q Consensus 703 ~glaGnl~~~~~~~-~~g~~~~Gs~~~~y~g~p~~ya~~P~~~iNyVs~HDn~tL 756 (971)
.++-+.|.. .++ .....|..| |..+|.|+++|||.||
T Consensus 353 -----g~~Vl~f~~~~~~---------~~~~~P~~~---~~~sva~~~THD~~Tl 390 (496)
T PF02446_consen 353 -----GMRVLQFEFDEDD---------GNFYLPHNY---PENSVAYTGTHDNPTL 390 (496)
T ss_dssp -----EEEEGGGSSSSST---------T-TTSGGGS---TSSEEEESS-TTS--H
T ss_pred -----ceEEEEecCCCCC---------CCCCCcccC---CCccEeeCCCCCCHHH
No 102
>PRK12568 glycogen branching enzyme; Provisional
Probab=78.03 E-value=5.6 Score=50.10 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=51.1
Q ss_pred CCccEEeCCe-eEEEEEcCCCCeEEEEEecCCCCCCCceEEec--ccCCCEEEEEeCCCCCCceEEEEEEEecCCCcccc
Q 002079 209 PLGALYAEET-VSLYLWAPTAQSVSACIYRDPLGGNPLEVVQL--KENDGVWSIKGPKSWEGCYYVYEVSVYHPSALQIE 285 (971)
Q Consensus 209 ~LGa~~~~~~-v~F~vWAPtA~~V~L~ly~~~~~~~~~~~~~M--~~~~GvW~v~~~~~~~G~~Y~Y~v~~~~p~~g~~~ 285 (971)
-||.+..+++ +.+|+|-|.|.+|.|+.- . + . ...+| ....|+|...++.. ..|+++++- .. +
T Consensus 29 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~--~-~-~--~~~~~~~~~~~g~f~~~~~~~---~~y~~~~~~--~~-~--- 93 (730)
T PRK12568 29 VLGPHPQADGRRQVRVLAPGAEAMGLIDG--R-G-K--LLARMQASPIDGVFEGILPAD---GPYRLRIVW--PD-V--- 93 (730)
T ss_pred hcCCcCCCCCcEEEEEECCCCcEEEEEec--C-C-c--cccccEecCCCCeEEEecCCC---CCEEEEEEe--CC-c---
Confidence 5899987777 699999999999999631 1 1 1 11256 35679999988743 348888762 11 1
Q ss_pred ceeecCcccccc
Q 002079 286 KCYANDPYARGL 297 (971)
Q Consensus 286 ~~~vtDPYa~~l 297 (971)
.....|||+...
T Consensus 94 ~~~~~dpy~~~~ 105 (730)
T PRK12568 94 VQEIEDPYAFAP 105 (730)
T ss_pred eEEeeccccccc
Confidence 246789999753
No 103
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=77.82 E-value=18 Score=45.59 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=21.9
Q ss_pred CcccccccccchhhhhhHHHHHHcCCcEEEeCCcccC
Q 002079 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQF 393 (971)
Q Consensus 357 rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~ 393 (971)
.|+|..+. +-++.+++.|.+.+.|+|+...
T Consensus 161 IGDfgdl~-------~l~d~~a~~G~~~~qlnPlha~ 190 (695)
T PRK11052 161 IGDFGDLK-------QMLEDVAKRGGDFIGLNPIHAL 190 (695)
T ss_pred eecHHHHH-------HHHHHHHHcCCCEEEECCCCcC
Confidence 37775532 2366678889999999999853
No 104
>PLN02635 disproportionating enzyme
Probab=77.12 E-value=14 Score=45.23 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCEEEEEEee
Q 002079 492 FRRMVQALNHIGLHVVLDVVY 512 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVy 512 (971)
++++-+.||++||++|-|+-+
T Consensus 226 w~~l~~yA~~~Gi~L~gDlpi 246 (538)
T PLN02635 226 WQAVRSYANEKGISIIGDMPI 246 (538)
T ss_pred HHHHHHHHHHCCCEEEEEeec
Confidence 567788899999999999985
No 105
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=77.04 E-value=5.3 Score=51.72 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCC-CCCcceeecCCCCccccCCC----CCCCCCCCHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDK-VVPGYYLRRNSDGFIEHSTC----MNNTASEHYMVERLII 565 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk-~vP~YY~r~~~~G~~~~stc----~~d~a~e~~mv~k~i~ 565 (971)
+.++||+.||++|++||.=+.. +..... ...+++. ...+||.+ +.+|......| +.-.+..||.++++..
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~d~---gY~~y~eg~~~~~fvk-~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~ 316 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKAEE---GYFVYDSGCENDVWIQ-TADGKPFVGEVWPGPCVFPDFTNKKTRSWWA 316 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCccCC---CCHHHHhHhhcCeeEE-CCCCCeeEeeecCCCccccCCCCHHHHHHHH
Confidence 3799999999999999764422 222110 0111221 11244433 34454222112 2234889999999999
Q ss_pred HHHHHHHHhCCccEEEEecC
Q 002079 566 DDLLCWAVNYKVDGFRFDLM 585 (971)
Q Consensus 566 Dsl~~W~~ey~IDGFRfDlm 585 (971)
+-++.++ +.|||||=.|.-
T Consensus 317 ~~~k~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 317 NLVKDFV-SNGVDGIWNDMN 335 (978)
T ss_pred HHHHHHh-cCCCcEEEccCC
Confidence 8888877 589999999973
No 106
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=76.88 E-value=20 Score=43.47 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCEEEEEEee
Q 002079 492 FRRMVQALNHIGLHVVLDVVY 512 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVy 512 (971)
++++.+.+|++||.+|-|+-+
T Consensus 200 ~~~~~~yA~~~Gi~L~gDLpi 220 (497)
T PRK14508 200 WKALKAYANDKGIEIIGDLPI 220 (497)
T ss_pred HHHHHHHHHHCCCEEEEeeec
Confidence 566778899999999999987
No 107
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=75.84 E-value=21 Score=39.35 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (971)
++.+=|++|++.|++|++=+ |-|.. . . |. .. .+.+.-++-.++++..
T Consensus 60 ~~~~~i~~~~~~g~KVllSi--------GG~~~-~-------~-fs---------------~~-a~~~~~r~~f~~s~~~ 106 (256)
T cd06546 60 TLWTELAILQSSGVKVMGML--------GGAAP-G-------S-FS---------------RL-DDDDEDFERYYGQLRD 106 (256)
T ss_pred HHHHHHHHHHhCCCEEEEEE--------CCCCC-C-------C-cc---------------cc-cCCHHHHHHHHHHHHH
Confidence 46666778899999999843 21110 0 0 10 01 1234455666888999
Q ss_pred HHHhCCccEEEEecCCCCcHHHHHHHHHHHHh
Q 002079 571 WAVNYKVDGFRFDLMGHIMKSTMMKAKHALHS 602 (971)
Q Consensus 571 W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~ 602 (971)
++++|++||+-||.-.-.....+..+.++||+
T Consensus 107 ~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~ 138 (256)
T cd06546 107 MIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRS 138 (256)
T ss_pred HHHHhCCCceEEeeecCCCHhHHHHHHHHHHH
Confidence 99999999999999865555555555555554
No 108
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=74.40 E-value=4.8 Score=49.57 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=62.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHH---------hCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCC-----CCc
Q 002079 550 MNNTASEHYMVERLIIDDLLCWAV---------NYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDG-----SSI 615 (971)
Q Consensus 550 ~~d~a~e~~mv~k~i~Dsl~~W~~---------ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~-----~~~ 615 (971)
.+|.+-.||.|+..-+.+|-|.+. +..+||||+|++.++..+.++-+.+-.++... ++. -.-
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYg----v~~~~a~An~H 218 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYG----VDKNDANANKH 218 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-----TTTBHHHHCTC
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhC----CCcChhhHhhh
Confidence 356788899999999999999886 78999999999999999988877776665532 221 123
Q ss_pred EEecccccccccccccccccccccccCCCcccccchHHHHHHcC
Q 002079 616 YIYGEGWDFGEVAKNGRGVNASQFNLSGTGIGSFNDRIRDAMLG 659 (971)
Q Consensus 616 ~l~GEgWd~gev~~~~~~~~a~q~~~~gtgig~fnDrlRdavrg 659 (971)
+-|-|.|..+....... ....|+ ++.+.+|-++..
T Consensus 219 lSilE~ws~nd~~y~~~-~g~~qL--------~mD~~~~~~l~~ 253 (809)
T PF02324_consen 219 LSILEAWSSNDPDYVKD-TGNPQL--------TMDNGLRLALLY 253 (809)
T ss_dssp --EESSSTTTHHHHHHH-TTSSSB--------EEEHHHHHHHHH
T ss_pred heeeeccccCChHHHhc-CCCcee--------eecHHHHHHHHH
Confidence 56679998776432111 112233 346677777764
No 109
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=71.81 E-value=18 Score=41.67 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCC-CCHHHHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTAS-EHYMVERLIIDDLL 569 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~-e~~mv~k~i~Dsl~ 569 (971)
=+++|++||++.||++.+ |-|... |. .|.|-.. ..+... . ..+... -...+.+++.+-++
T Consensus 139 iv~El~~A~rk~Glk~G~---Y~S~~d---w~--------~~~~~~~--~~~~~~--~-~~~~~~~~~~~~~~~~~~ql~ 199 (346)
T PF01120_consen 139 IVGELADACRKYGLKFGL---YYSPWD---WH--------HPDYPPD--EEGDEN--G-PADGPGNWQRYYNEYWLAQLR 199 (346)
T ss_dssp HHHHHHHHHHHTT-EEEE---EEESSS---CC--------CTTTTSS--CHCHHC--C---HCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEE---EecchH---hc--------CcccCCC--ccCCcc--c-ccccchhhHhHhhhhhHHHHH
Confidence 599999999999999998 433321 10 1111100 000000 0 000000 11235567888899
Q ss_pred HHHHhCCccEEEEecCCCCc--HHHHHHHHHHHHhhccc
Q 002079 570 CWAVNYKVDGFRFDLMGHIM--KSTMMKAKHALHSLTKE 606 (971)
Q Consensus 570 ~W~~ey~IDGFRfDlm~~~~--~~~~~~~~~al~~i~p~ 606 (971)
-.+..|++|.+=||.....+ ...+.++.+.++++.|+
T Consensus 200 EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~ 238 (346)
T PF01120_consen 200 ELLTRYKPDILWFDGGWPDPDEDWDSAELYNWIRKLQPD 238 (346)
T ss_dssp HHHHCSTESEEEEESTTSCCCTHHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCcceEEecCCCCccccccCHHHHHHHHHHhCCe
Confidence 99999999999999987533 33457788889998863
No 110
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=71.26 E-value=14 Score=41.51 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 002079 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCW 571 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W 571 (971)
..+|++.+|++|++|++=| -|... +.+. +..++ .-..++..|+-+++++..+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i-~~~~~--~~~~---------~~~~~----------------~~l~~~~~r~~fi~~iv~~ 98 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVI-TNLTN--GNFD---------SELAH----------------AVLSNPEARQRLINNILAL 98 (313)
T ss_pred CHHHHHHHHHCCCeEEEEE-ecCCC--CCCC---------HHHHH----------------HHhcCHHHHHHHHHHHHHH
Confidence 4689999999999999755 33221 1000 00111 0134567888899999999
Q ss_pred HHhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002079 572 AVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 572 ~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~ 604 (971)
+++||+||+-+|.-. +..+........|+++.
T Consensus 99 l~~~~~DGidiDwE~-~~~~d~~~~~~fl~~lr 130 (313)
T cd02874 99 AKKYGYDGVNIDFEN-VPPEDREAYTQFLRELS 130 (313)
T ss_pred HHHhCCCcEEEeccc-CCHHHHHHHHHHHHHHH
Confidence 999999999999875 33333333334444443
No 111
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=71.17 E-value=53 Score=37.02 Aligned_cols=78 Identities=14% Similarity=0.006 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (971)
+++++++|+.+++.|++|..-+.+--.. + |..+. -.+++.+.+
T Consensus 119 l~~~~~~v~~ak~~g~~v~~~i~~~~~~---~-------------~~~~~---------------------~~~~~~~~~ 161 (287)
T PRK05692 119 LERFEPVAEAAKQAGVRVRGYVSCVLGC---P-------------YEGEV---------------------PPEAVADVA 161 (287)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEEecC---C-------------CCCCC---------------------CHHHHHHHH
Confidence 5579999999999999998777763221 1 00000 024667777
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002079 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 569 ~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i~ 604 (971)
+... +.|+|.+++ |.+|...+..+.+....|++..
T Consensus 162 ~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 162 ERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred HHHH-HcCCcEEEeccccCccCHHHHHHHHHHHHHhC
Confidence 7765 689998887 9999999888777777776543
No 112
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=70.56 E-value=11 Score=36.59 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=43.9
Q ss_pred EeCCeeEEEEEcC--CCCeEEEEEecCCCC--CCCceEEec-----ccCCCEEEEEeCCCCCCceEEEEEEE
Q 002079 214 YAEETVSLYLWAP--TAQSVSACIYRDPLG--GNPLEVVQL-----KENDGVWSIKGPKSWEGCYYVYEVSV 276 (971)
Q Consensus 214 ~~~~~v~F~vWAP--tA~~V~L~ly~~~~~--~~~~~~~~M-----~~~~GvW~v~~~~~~~G~~Y~Y~v~~ 276 (971)
++++.+++||++. .+++|.|+.-+.... .......+| ++....|+++++.......|.|+|..
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~ 89 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELED 89 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEe
Confidence 4678899999986 567888765444321 123356788 34568899999977777899999974
No 113
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=68.98 E-value=40 Score=38.42 Aligned_cols=74 Identities=7% Similarity=0.074 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHhcCCEEEEEE-eeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDv-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (971)
-+|+|++|+-|.++||+||-.+ ++-|+.+-.. ..|.+ ...+. ......+.++..++.+.++|.+.
T Consensus 81 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~---------~~pel----~~~~~-~~~~~~~~l~~~~~~t~~f~~~l 146 (326)
T cd06564 81 KEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTK---------AMPEL----GLKNP-FSKYDKDTLDISNPEAVKFVKAL 146 (326)
T ss_pred HHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHH---------hhHHh----cCCCc-ccCCCcccccCCCHHHHHHHHHH
Confidence 3699999999999999999876 4677643110 00100 00000 01123345678899999999998
Q ss_pred HHHHHHhCC
Q 002079 568 LLCWAVNYK 576 (971)
Q Consensus 568 l~~W~~ey~ 576 (971)
+...+.-+.
T Consensus 147 ~~E~~~~f~ 155 (326)
T cd06564 147 FDEYLDGFN 155 (326)
T ss_pred HHHHHHhcC
Confidence 888876665
No 114
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=68.56 E-value=1.3e+02 Score=36.93 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.3
Q ss_pred CCCCceeeeccccccccHHH
Q 002079 739 LCPTETISYVSAHDNETLFD 758 (971)
Q Consensus 739 ~~P~~~iNyVs~HDn~tL~D 758 (971)
.-|..+|.|++.|||.|+.-
T Consensus 392 ~~~~nsva~tsTHD~ptl~g 411 (520)
T COG1640 392 YYPPNSVATTSTHDLPTLRG 411 (520)
T ss_pred hcccceeEEeccCCChhHHH
Confidence 34668899999999998853
No 115
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=67.25 E-value=13 Score=42.69 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (971)
+.++||+.||++|++||+-+.. |.. .| ...| .-+.-.+..||.++++-.+-.+.
T Consensus 65 dp~~mv~~L~~~G~klv~~i~P-~i~-~g---------~~~~---------------~~~~~pDftnp~ar~wW~~~~~~ 118 (332)
T cd06601 65 NPKEMFDNLHNKGLKCSTNITP-VIS-YG---------GGLG---------------SPGLYPDLGRPDVREWWGNQYKY 118 (332)
T ss_pred CHHHHHHHHHHCCCeEEEEecC-cee-cC---------ccCC---------------CCceeeCCCCHHHHHHHHHHHHH
Confidence 4789999999999999887643 221 00 0000 00112366789999988887777
Q ss_pred HHHhCCccEEEEecC
Q 002079 571 WAVNYKVDGFRFDLM 585 (971)
Q Consensus 571 W~~ey~IDGFRfDlm 585 (971)
+. +.|||||=.|.-
T Consensus 119 l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 119 LF-DIGLEFVWQDMT 132 (332)
T ss_pred HH-hCCCceeecCCC
Confidence 66 579999999965
No 116
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=65.56 E-value=42 Score=39.43 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHH---HHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLI---IDD 567 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i---~Ds 567 (971)
=+++|++||++.||++-+ | |. .+|-..|.|-...+.. ......+...+++ ..-
T Consensus 129 iv~el~~A~rk~Glk~G~---Y-~S----------~~DW~~p~y~~~~~~~----------~~~~~~~~~~~y~~~~~~Q 184 (384)
T smart00812 129 LVGELADAVRKRGLKFGL---Y-HS----------LFDWFNPLYAGPTSSD----------EDPDNWPRFQEFVDDWLPQ 184 (384)
T ss_pred hHHHHHHHHHHcCCeEEE---E-cC----------HHHhCCCccccccccc----------cccccchhHHHHHHHHHHH
Confidence 599999999999999998 4 21 1222235442110100 0012234566677 788
Q ss_pred HHHHHHhCCccEEEEecCCCCcHH--HHHHHHHHHHhhccc
Q 002079 568 LLCWAVNYKVDGFRFDLMGHIMKS--TMMKAKHALHSLTKE 606 (971)
Q Consensus 568 l~~W~~ey~IDGFRfDlm~~~~~~--~~~~~~~al~~i~p~ 606 (971)
++-.+..||-|.+=||.....+.. .+.++.+.++++.|+
T Consensus 185 l~ELit~Ygpd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~ 225 (384)
T smart00812 185 LRELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPV 225 (384)
T ss_pred HHHHHhcCCCceEEEeCCCCCccchhcHHHHHHHHHHhCCC
Confidence 888899999999999987544443 356778888888864
No 117
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=64.34 E-value=14 Score=49.51 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCCCCcEEeccccccccc
Q 002079 554 ASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEV 627 (971)
Q Consensus 554 a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev 627 (971)
-.++|...++|.+-.+.-++- ++|||+|-...-|...-+.+.++.|+++| ++|+++|-+...|.
T Consensus 485 peDsP~LW~~M~~Y~~~~Aki--F~G~RiDNCHSTPlhVaeylLd~AR~vnP--------nLyV~AELFTGSee 548 (1464)
T TIGR01531 485 PEDSPYLWQHMKEYTEMTARI--FDGVRIDNCHSTPIHVAEYLLDAARKYNP--------NLYVVAELFTGSET 548 (1464)
T ss_pred CcCCHHHHHHHHHHHHHHHHh--hcceeeecccCCcHHHHHHHHHHHhhcCC--------CeEEEeeecCCcHH
Confidence 356899999999999998875 79999999999999988888899999984 69999999876653
No 118
>PLN03244 alpha-amylase; Provisional
Probab=62.71 E-value=9.2 Score=48.36 Aligned_cols=147 Identities=20% Similarity=0.268 Sum_probs=89.4
Q ss_pred Cee-eEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHH
Q 002079 764 GIP-FFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALEN 842 (971)
Q Consensus 764 GiP-fiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~ 842 (971)
|.| +++||.|+|... ++||.++.|||...+ ....|..+. ++ ....+.++
T Consensus 702 G~kkLnFMGNEFGhpe--------------~~dfPr~gN~~s~~~-----arrdW~Lld----~~-------~hk~L~~F 751 (872)
T PLN03244 702 GHAYLNFMGNEFGHPE--------------RIEFPMPSNNFSFSL-----ANRCWDLLE----NE-------VHHHLFSF 751 (872)
T ss_pred CccceeecccccCCch--------------heeccccCCCccccc-----cccCccccC----Ch-------hHHHHHHH
Confidence 788 799999999632 456777777775432 244676432 11 13578899
Q ss_pred HHHHHHHHhcCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCC----cEE
Q 002079 843 FSDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPT----EVS 918 (971)
Q Consensus 843 ~k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~----~~~ 918 (971)
+|+|++|++++|+|..+- + .+...+. ...||+|.|. .+|||+|.++. ...
T Consensus 752 drdLn~Ly~~~~aL~~gf-~----wI~~~d~----e~kVIAF~R~-----------------~LLfVfNF~P~~sy~dYr 805 (872)
T PLN03244 752 DKDLMDLDENEGILSRGL-P----NIHHVKD----AAMVISFMRG-----------------PFLFIFNFHPSNSYEGYD 805 (872)
T ss_pred HHHHHHHHhcCcccccCC-c----EEeeecC----CCCEEEEEec-----------------CEEEEEeCCCCCCccCCE
Confidence 999999999999996432 1 2223332 3569999994 28999999985 234
Q ss_pred EEcCCCCCCceEeecce----eccccccccCccee-----------ecCcEEEEcCceEEEEEEcc
Q 002079 919 FVSPALQGKNLQLHPIQ----VKSVDEIVKNSSYE-----------ANSGCFVIPPRTTSVFVEPR 969 (971)
Q Consensus 919 ~~lp~~~~~~~~l~~~~----~~~~d~~v~~~~~~-----------~~~g~~tVpa~S~aVfv~~~ 969 (971)
+-+|. ...|++.... ..+. ..+....+. ...-.++|||+|++||...+
T Consensus 806 IGVp~--~G~Y~eILNSD~~~FGG~-g~~~~~~~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~ 868 (872)
T PLN03244 806 VGVEE--AGEYQIILNSDETKYGGQ-GIIEEDHYLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSR 868 (872)
T ss_pred ECCCC--CCeEEEEEeCChhhhCCC-CccCCCceeecccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 44443 3345543211 1111 111111010 01236899999999998654
No 119
>PRK14705 glycogen branching enzyme; Provisional
Probab=60.90 E-value=24 Score=47.15 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=89.4
Q ss_pred CeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHHHH
Q 002079 764 GIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALENF 843 (971)
Q Consensus 764 GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~~~ 843 (971)
|+|+||||+|++..+.-+ + -..+||...+ .+ ....+..++
T Consensus 1061 Gk~LlFMG~Efgq~~ew~---~-----~~~LdW~ll~-------------------------~~-------~h~~~~~~~ 1100 (1224)
T PRK14705 1061 GKQLIFMGTEFGQEAEWS---E-----QHGLDWFLAD-------------------------IP-------AHRGIQLLT 1100 (1224)
T ss_pred CcCEEECccccCCCCCcc---c-----cccCCCcccC-------------------------Ch-------hhHHHHHHH
Confidence 999999999999765421 0 1245554311 00 114578899
Q ss_pred HHHHHHHhcCcccccCchhhhccceEEecCCCCCCCcEEEEEEEcCCCCCCCccccCCCCCEEEEEEeCCCCcEE---EE
Q 002079 844 SDVLRIRYSSPLFRLRTANAIQERICFHNTGPSAVPGVIVMSIEDGHEGVPGLSQLDSNYSYIVVIFNSSPTEVS---FV 920 (971)
Q Consensus 844 k~Li~LRks~pafrlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~~~~~~~~~~~d~~~~~ivVv~N~s~~~~~---~~ 920 (971)
|+|++||+++|+|...+... ..+.|.+.. +....||+|.|.+.. .+.++||+|.++.++. +.
T Consensus 1101 rdLn~ly~~~paL~~~d~~~--~gf~wi~~~-d~~~~vlaf~R~~~~------------~~~vlvv~Nftp~~~~~y~ig 1165 (1224)
T PRK14705 1101 KDLNELYTSTPALYQRDNEP--GGFQWINGG-DADRNVLSFIRWDGD------------GNPLVCAINFSGGPHKGYTLG 1165 (1224)
T ss_pred HHHHHHHhcChhhhccCCCC--CceEEeecC-CCCCcEEEEEEeCCC------------CCEEEEEEcCCCCCccCceEC
Confidence 99999999999998766432 234454322 234579999998632 1469999999998876 44
Q ss_pred cCCCCCCceEeecce----eccccccccCcceee---------cCcEEEEcCceEEEEEEc
Q 002079 921 SPALQGKNLQLHPIQ----VKSVDEIVKNSSYEA---------NSGCFVIPPRTTSVFVEP 968 (971)
Q Consensus 921 lp~~~~~~~~l~~~~----~~~~d~~v~~~~~~~---------~~g~~tVpa~S~aVfv~~ 968 (971)
+|. ...|+..-.. ..+. .+........ .+-+++|||++++||...
T Consensus 1166 vp~--~G~y~eilnsd~~~ygGs-g~~n~~~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1166 VPA--AGAWTEVLNTDHETYGGS-GVLNPGSLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred CCC--CCeEEEEEeCchhhcCCC-CcCCCCceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 553 2245432211 0111 1111110000 123799999999999864
No 120
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=58.68 E-value=64 Score=37.25 Aligned_cols=79 Identities=6% Similarity=-0.037 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCEEEEEE-eeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 002079 490 IEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDv-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (971)
+|+|++|+-+.++||+||-.+ ++.|+.+-...-+.-..+. +.++ .......++.-++..++.+.+++.+.+
T Consensus 70 ~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~~~~--~~~~------~~~~~~~~~~~L~~~~~~t~~fl~~vl 141 (348)
T cd06562 70 EDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELLTGC--YAVW------RKYCPEPPCGQLNPTNPKTYDFLKTLF 141 (348)
T ss_pred HHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhhCCC--Cccc------cccccCCCCccccCCChhHHHHHHHHH
Confidence 589999999999999999887 5678754211111000110 0000 000011234457888999999999888
Q ss_pred HHHHHhCC
Q 002079 569 LCWAVNYK 576 (971)
Q Consensus 569 ~~W~~ey~ 576 (971)
...++-|.
T Consensus 142 ~E~~~lF~ 149 (348)
T cd06562 142 KEVSELFP 149 (348)
T ss_pred HHHHHhcC
Confidence 88886544
No 121
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=57.63 E-value=96 Score=37.94 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCEEEEEEeec
Q 002079 492 FRRMVQALNHIGLHVVLDVVYN 513 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyN 513 (971)
++++-+.++.+||++|-|+-+-
T Consensus 214 ~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 214 FQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHhcCCcEEEEeCcce
Confidence 5566677889999999999763
No 122
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=54.93 E-value=20 Score=49.29 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC--cHHHHHHHHHHHHhhcccccCCCCCCcEEecc
Q 002079 554 ASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI--MKSTMMKAKHALHSLTKEIHGVDGSSIYIYGE 620 (971)
Q Consensus 554 a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~--~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GE 620 (971)
.-|++.|-+..-.-+..|+++=.|||.|+|-..-+ |...+.+.++.+....... +-..+..|++.|
T Consensus 1045 RvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr~~~~~~~~~~-~~~~~~~yivvE 1112 (1693)
T PRK14507 1045 RMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQAAVGAGPGPA-GRPPPGLYIVVE 1112 (1693)
T ss_pred eccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHHHhhhhhccc-ccCCCCceEEEE
Confidence 57899998888888999999999999999988665 5566777766554332100 001134678777
No 123
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=53.29 E-value=63 Score=37.11 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhcCCEEEEEE-eeccccCCCCCCCCCccCCCCCcceeecCCCCc---c--ccCCCCCCCCCCCHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGF---I--EHSTCMNNTASEHYMVER 562 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDv-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~---~--~~stc~~d~a~e~~mv~k 562 (971)
.+|+|++|+-|.++||+||-.+ ++-|+.+-.. ..|.+ ...+. . ....+++.++..++.+.+
T Consensus 74 ~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~---------~~p~l----~~~~~~~~~~~~~~~~~~~l~~~~~~t~~ 140 (329)
T cd06568 74 QEDYKDIVAYAAERHITVVPEIDMPGHTNAALA---------AYPEL----NCDGKAKPLYTGIEVGFSSLDVDKPTTYE 140 (329)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHH---------hChhh----ccCCCCCccccccCCCCcccCCCCHHHHH
Confidence 3699999999999999999887 4566643110 00110 01110 0 011234567889999999
Q ss_pred HHHHHHHHHHHhC
Q 002079 563 LIIDDLLCWAVNY 575 (971)
Q Consensus 563 ~i~Dsl~~W~~ey 575 (971)
++.+.+...+.-+
T Consensus 141 fl~~v~~E~~~~f 153 (329)
T cd06568 141 FVDDVFRELAALT 153 (329)
T ss_pred HHHHHHHHHHHhC
Confidence 9988888877544
No 124
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=51.94 E-value=44 Score=34.62 Aligned_cols=24 Identities=13% Similarity=0.400 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCEEEEEEeecc
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNH 514 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNH 514 (971)
-+..+.+++.+.||+|++-+.+++
T Consensus 66 ~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 66 LLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCc
Confidence 488889999999999999988874
No 125
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=51.43 E-value=64 Score=43.52 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=23.7
Q ss_pred CcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCC
Q 002079 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAG 395 (971)
Q Consensus 357 rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~ 395 (971)
.|+|..+. +-++.|++.|.+.|+|+|+.....
T Consensus 742 iGDf~dl~-------~~vd~~a~~G~~~~qilPl~~~~~ 773 (1221)
T PRK14510 742 IGDFEELY-------ALVDFLAEGGQSLWGVNPLHPLGL 773 (1221)
T ss_pred ccCHHHHH-------HHHHHHHHcCCCEEEECCCCCCCC
Confidence 36774443 346778889999999999987543
No 126
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=50.17 E-value=33 Score=38.52 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH----------HHHHHHHHHHHhh
Q 002079 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK----------STMMKAKHALHSL 603 (971)
Q Consensus 557 ~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~----------~~~~~~~~al~~i 603 (971)
++.-++-+++++..|+++|++||+-||.-..... .++.+++++|++.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~ 152 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRA 152 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccc
Confidence 4467888999999999999999999999876553 2355566666554
No 127
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=48.77 E-value=39 Score=38.94 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeeccccC
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQG 517 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNHt~~ 517 (971)
++...+|.+.+++.||+|+||+=|.++-+
T Consensus 57 ~~~~~~~akrak~~Gm~vlldfHYSD~Wa 85 (332)
T PF07745_consen 57 LEDVIALAKRAKAAGMKVLLDFHYSDFWA 85 (332)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SSSS--
T ss_pred HHHHHHHHHHHHHCCCeEEEeecccCCCC
Confidence 56899999999999999999999987744
No 128
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=48.47 E-value=89 Score=35.86 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=57.1
Q ss_pred CCCCCcCCCCCCCCCCCchhHHH-HHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceee----cCCC---
Q 002079 470 VLWGVPKGSYASNPNGSCRTIEF-RRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLR----RNSD--- 541 (971)
Q Consensus 470 ~~y~ape~sYgt~~~g~~ri~Ef-r~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r----~~~~--- 541 (971)
++..++|++.+...++. | .+=|++||+.|.+||-=+ | . |...+.. .||.. ..+.
T Consensus 65 ~d~vVID~~~~g~~~~~-----fs~~~i~~Lk~~g~~viaYl--S-v---Ge~E~~R-------~y~~~~~~~~~~~~l~ 126 (315)
T TIGR01370 65 FELVVIDYSKDGTEDGT-----YSPEEIVRAAAAGRWPIAYL--S-I---GAAEDYR-------FYWQKGWKVNAPAWLG 126 (315)
T ss_pred CCEEEEccccccCcccC-----CCHHHHHHHHhCCcEEEEEE--E-c---hhccccc-------hhhhhhhhcCCHHHhC
Confidence 56678888875433321 2 455778899998876322 2 2 2221111 13211 0110
Q ss_pred CccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC
Q 002079 542 GFIEHSTCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI 588 (971)
Q Consensus 542 G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~ 588 (971)
+...++...--++..++..+++|.+-+..-+ +-|+|||=+|.+...
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 1122222223457778899999998877654 579999999988653
No 129
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=47.91 E-value=44 Score=42.51 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCEEEEEEe-eccccCC-CCCCCCCccCCCCCcceeecCCCCcc---ccCC--CCCCCCCCCHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVV-YNHLQGS-GPFDDNSVLDKVVPGYYLRRNSDGFI---EHST--CMNNTASEHYMVERL 563 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvV-yNHt~~~-g~~~~~s~lDk~vP~YY~r~~~~G~~---~~st--c~~d~a~e~~mv~k~ 563 (971)
.|+++|+.||++|+++|+=+- +.+++.+ +++++. ..+- ++ -.+..|.. -+.+ --.=.+.-||.+...
T Consensus 352 ~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g--~~~~---v~-I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~W 425 (805)
T KOG1065|consen 352 DLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRG--VAKD---VL-IKNREGSPKMLGEVWPGSTAFPDFTNPAVVEW 425 (805)
T ss_pred chHHHHHHHHhCCCeEEEEeCCccccCccchhhhhh--hhhc---ee-eecccCchhhhcccCCCcccccccCCchHHHH
Confidence 399999999999999876443 2344333 433321 1110 11 01112211 0101 111125667788888
Q ss_pred HHHHHHHHHHhCCccEEEEecC
Q 002079 564 IIDDLLCWAVNYKVDGFRFDLM 585 (971)
Q Consensus 564 i~Dsl~~W~~ey~IDGFRfDlm 585 (971)
..+.++..=.++.+|||=+|+-
T Consensus 426 w~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 426 WLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred HHHHHHhhcccCCccceEEECC
Confidence 8888887778899999999983
No 130
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=47.62 E-value=35 Score=35.51 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCc
Q 002079 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIM 589 (971)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~ 589 (971)
.++..++-+++++..|+++|++||+-+|......
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~ 117 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGA 117 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCC
Confidence 3456677889999999999999999999986544
No 131
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=45.52 E-value=26 Score=39.92 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCEEEEEEeeccc
Q 002079 493 RRMVQALNHIGLHVVLDVVYNHL 515 (971)
Q Consensus 493 r~mV~alH~~Gi~VIlDvVyNHt 515 (971)
.+..++|.+.||-||+|+--.+.
T Consensus 82 d~CM~~~~~aGIYvi~Dl~~p~~ 104 (314)
T PF03198_consen 82 DECMSAFADAGIYVILDLNTPNG 104 (314)
T ss_dssp HHHHHHHHHTT-EEEEES-BTTB
T ss_pred HHHHHHHHhCCCEEEEecCCCCc
Confidence 45566788999999999876543
No 132
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=45.25 E-value=95 Score=34.93 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHH
Q 002079 490 IEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLL 569 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~ 569 (971)
.+|.+-|+.|+++|++|+|=+ .| +.. .|. ...+.-++-+.++|.
T Consensus 59 ~~~~~dI~~cq~~G~KVlLSI-------GG-~~~---------~~~-------------------~~s~~~a~~Fa~~l~ 102 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLSI-------GG-AGG---------SYS-------------------LSSDADAKDFADYLW 102 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEEc-------cC-CCC---------CcC-------------------CCCHHHHHHHHHHHH
Confidence 379999999999999999942 12 110 011 022345555666655
Q ss_pred HHH---------H---hCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002079 570 CWA---------V---NYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 570 ~W~---------~---ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~ 604 (971)
.+. + ++++|||-||.-.-.. ..+..+.++||+..
T Consensus 103 ~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~-~~~~~l~~~LR~~~ 148 (280)
T cd02877 103 NAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP-ENYDALAKRLRSLF 148 (280)
T ss_pred HHhCCccccccccccccccccceEEecccCCc-cCHHHHHHHHHHHh
Confidence 443 2 5679999999875433 33445555555543
No 133
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=45.22 E-value=1.8e+02 Score=33.72 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhcCCEEEEEE-eeccccCCCCCCCCCccCCCCCcceeecCCCCccc--cCCCCCCCCCCCHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIE--HSTCMNNTASEHYMVERLII 565 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDv-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~--~stc~~d~a~e~~mv~k~i~ 565 (971)
.+|+|++|+-|.++||+||-.+ ++.|+.+-.. . .|.+-. ......+. ....++-++..++.+.+++.
T Consensus 85 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~--------~-~pel~~-~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~ 154 (357)
T cd06563 85 QEEIREIVAYAAERGITVIPEIDMPGHALAALA--------A-YPELGC-TGGPGSVVSVQGVVSNVLCPGKPETYTFLE 154 (357)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCchhHHHHHH--------h-CccccC-CCCCCccccccCcCCCccCCCChhHHHHHH
Confidence 4699999999999999999887 4677753110 0 011100 00000000 01123456778888888888
Q ss_pred HHHHHHHHhC
Q 002079 566 DDLLCWAVNY 575 (971)
Q Consensus 566 Dsl~~W~~ey 575 (971)
+.+.-.+.-|
T Consensus 155 ~ll~E~~~lF 164 (357)
T cd06563 155 DVLDEVAELF 164 (357)
T ss_pred HHHHHHHHhC
Confidence 8888777543
No 134
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=45.06 E-value=19 Score=41.17 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCEEEEEE
Q 002079 490 IEFRRMVQALNHIGLHVVLDV 510 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDv 510 (971)
.+++.+++.|+++||.|||-.
T Consensus 63 ~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 63 RDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp G-HHHHHHHHHHTT-EEEEEE
T ss_pred hhHHHHHHHHHHcCcEEEecc
Confidence 479999999999999999874
No 135
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=43.02 E-value=47 Score=37.34 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002079 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 555 ~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~ 604 (971)
..++..|+-+++++..++++|++||.-+|.-. +..+........|+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~~~~d~~~~~~fl~eL~ 131 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE-LPADDLPKYVAFLSELR 131 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-CChhHHHHHHHHHHHHH
Confidence 35667889899999999999999999999974 44433333444444443
No 136
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=42.53 E-value=1e+02 Score=34.96 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Q 002079 491 EFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLC 570 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~ 570 (971)
.+..-|++|+++|++||+=+ |-+.. . ++ . .+| .-++-+++++..
T Consensus 55 ~~~~~i~~lk~~G~kViiS~--------GG~~g-~--------~~---------~-~~~---------~~~~~~~~a~~~ 98 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVSF--------GGASG-T--------PL---------A-TSC---------TSADQLAAAYQK 98 (294)
T ss_pred hHHHHHHHHHHcCCeEEEEe--------cCCCC-C--------cc---------c-cCc---------ccHHHHHHHHHH
Confidence 58888999999999999821 21110 0 11 0 012 234556677777
Q ss_pred HHHhCCccEEEEecCCCCcHH--HHHHHHHHHHhhcc
Q 002079 571 WAVNYKVDGFRFDLMGHIMKS--TMMKAKHALHSLTK 605 (971)
Q Consensus 571 W~~ey~IDGFRfDlm~~~~~~--~~~~~~~al~~i~p 605 (971)
.++.|++||.-||.-+-...+ .+....++|+++..
T Consensus 99 ~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~ 135 (294)
T cd06543 99 VIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQK 135 (294)
T ss_pred HHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHH
Confidence 889999999999998866543 24555555555543
No 137
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=41.66 E-value=60 Score=41.75 Aligned_cols=62 Identities=16% Similarity=0.036 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhcccccCCCCCCcEEeccccccccc
Q 002079 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKEIHGVDGSSIYIYGEGWDFGEV 627 (971)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~~~~~~~~~~~l~GEgWd~gev 627 (971)
..|...+.|..-...=++- +||+|+|-...-|...-+...++.++++| ++|+++|-+...|.
T Consensus 509 DsPyLWq~M~kY~e~tAri--FdG~RlDNcHsTPlHVaEylLd~ARk~nP--------nlYVvAELFtgSe~ 570 (1521)
T KOG3625|consen 509 DSPYLWQHMKKYTEITARI--FDGVRLDNCHSTPLHVAEYLLDAARKLNP--------NLYVVAELFTGSED 570 (1521)
T ss_pred cChHHHHHHHHHHHHHHHH--hcceeeccCCCCchhHHHHHHHHHHhcCC--------CeEEEeeeccCCcc
Confidence 4577778887777766654 69999999988888877778888889985 69999998865553
No 138
>PLN02950 4-alpha-glucanotransferase
Probab=41.06 E-value=2.6e+02 Score=36.69 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=36.1
Q ss_pred eeEEEEEcCC---CCeEEEEEec--CCCCCCCceEEec-ccCCCEEEEEeCCCCC--CceEEEEEE
Q 002079 218 TVSLYLWAPT---AQSVSACIYR--DPLGGNPLEVVQL-KENDGVWSIKGPKSWE--GCYYVYEVS 275 (971)
Q Consensus 218 ~v~F~vWAPt---A~~V~L~ly~--~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~--G~~Y~Y~v~ 275 (971)
.|+|+|-+|+ -++|.|+ -+ +-+.+.+...+.| ......|++.+.-... ...|+|-+.
T Consensus 154 ~V~F~v~~~~~~~Gq~v~Vv-Gs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 154 VVRFKIACPRLEEGTSVYVT-GSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred eEEEEEecCccCCCCeEEEE-echhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEE
Confidence 6899999994 4566654 11 1122344456778 4567899999864322 346888775
No 139
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=40.95 E-value=32 Score=38.86 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEec
Q 002079 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDL 584 (971)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~ey~IDGFRfDl 584 (971)
.++..|+-+++++..++++||+||.-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 56678999999999999999999999993
No 140
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=40.94 E-value=19 Score=41.08 Aligned_cols=41 Identities=15% Similarity=0.387 Sum_probs=22.4
Q ss_pred CCCCC-CcCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeec
Q 002079 463 YNWGY-NPVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYN 513 (971)
Q Consensus 463 ~nWGY-dp~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyN 513 (971)
.+|-| |.+-|+. + ..-+-|. ...|+++|++|.+|+==+.+.
T Consensus 24 ~~W~yiD~fvyws-h-~~i~iP~--------~~widaAHrnGV~vLGTiife 65 (311)
T PF03644_consen 24 SYWQYIDIFVYWS-H-GLITIPP--------AGWIDAAHRNGVKVLGTIIFE 65 (311)
T ss_dssp --GGG-SEEEET--T-BSSE-----------HHHHHHHHHTT--EEEEEEEE
T ss_pred ccccceeeEeecc-c-ccccCCC--------chhHHHHHhcCceEEEEEEec
Confidence 35665 5555555 2 3333332 468999999999998766663
No 141
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=40.58 E-value=54 Score=36.90 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=19.6
Q ss_pred CCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeecc
Q 002079 470 VLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNH 514 (971)
Q Consensus 470 ~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNH 514 (971)
.+|..|++.| -+.+.++|+.|+++||.+. +|+=|
T Consensus 77 ~d~~~~N~~Y---------F~~~d~~i~~a~~~Gi~~~--lv~~w 110 (289)
T PF13204_consen 77 FDFTRPNPAY---------FDHLDRRIEKANELGIEAA--LVPFW 110 (289)
T ss_dssp ---TT----H---------HHHHHHHHHHHHHTT-EEE--EESS-
T ss_pred cCCCCCCHHH---------HHHHHHHHHHHHHCCCeEE--EEEEE
Confidence 4566666555 3479999999999999985 55544
No 142
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=40.35 E-value=57 Score=36.76 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcH---H----HHHHHHHHHHh
Q 002079 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMK---S----TMMKAKHALHS 602 (971)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~---~----~~~~~~~al~~ 602 (971)
.++..|+-++++++.|+++|++||.-+|-..-... . +++++++++++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999998753322 1 34556666553
No 143
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=39.87 E-value=61 Score=38.61 Aligned_cols=51 Identities=12% Similarity=0.015 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhccc
Q 002079 554 ASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLTKE 606 (971)
Q Consensus 554 a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~p~ 606 (971)
..++|...+.|.+-.+.-++- ++|||+|-...-|...-+.+.++.|+++|+
T Consensus 372 peDsP~LW~~M~~Yt~~~A~i--F~G~RiDNCHSTPlhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 372 PEDSPFLWKHMKEYTELMAKI--FHGFRIDNCHSTPLHVAEYLLDAARKVNPN 422 (423)
T ss_pred CCCCHHHHHHHHHHHHHHHHh--cCeeeeecCCCCcHHHHHHHHHHHHhhCCC
Confidence 357899999999999988875 799999999999998888888888888864
No 144
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=38.21 E-value=48 Score=36.51 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEE
Q 002079 490 IEFRRMVQALNHIGLHVVLDV 510 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDv 510 (971)
++..++|+.+|++|++|+-.|
T Consensus 100 ~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 100 EERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHHHhCCCeEeccc
Confidence 478899999999999999654
No 145
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=37.61 E-value=72 Score=36.18 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 002079 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (971)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm 585 (971)
.++..|+-+++++..|+++|++||+-+|-.
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDwE 134 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDWE 134 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECCc
Confidence 456778889999999999999999999976
No 146
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=37.52 E-value=70 Score=36.16 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCC
Q 002079 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGH 587 (971)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~ 587 (971)
.++..|+-+++++..|+++|++||+-+|.-..
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~ 118 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYP 118 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCC
Confidence 44567888999999999999999999997654
No 147
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=35.65 E-value=16 Score=45.79 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=52.1
Q ss_pred CCCeeeEeccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcCCCCccccccCCCCCCCCchhhhHHHHHH
Q 002079 762 LKGIPFFHCGDEILRSKSLDRDSYNSGDWLNRIDFSYNSNNWGVGLPPKEKNEKNWPLIRPRLADPSFKPQKSHILAALE 841 (971)
Q Consensus 762 ~~GiPfiy~GdEigrSks~d~nsY~sgD~~N~~dw~~~~n~w~~GlP~~~~n~~~w~~i~~~l~~~~~~~~~~~~~~~~~ 841 (971)
..|||=||.|+|.... |--.+|...++||....- -| ..-....|+.+... .|.. -..
T Consensus 718 aPGVPD~YQGtE~wd~------SLVDPDNRRpVDf~~~~~----~L--~~lq~~~~~l~~~~----------~Dg~-K~~ 774 (889)
T COG3280 718 APGVPDIYQGTELWDF------SLVDPDNRRPVDFATRAQ----AL--KALQEGDFELLEHW----------LDGI-KQA 774 (889)
T ss_pred CCCCCccccchhhhhc------cccCCCCCCCCcHHHHHH----HH--hcCCCCchhHHHHh----------hhhH-HHH
Confidence 3499999999999853 333466667888742100 00 00000011111110 0110 112
Q ss_pred HHHHHHHHHhcCcc-cccCchhhhccceEEecCCCCCCCcEEEEEEEcC
Q 002079 842 NFSDVLRIRYSSPL-FRLRTANAIQERICFHNTGPSAVPGVIVMSIEDG 889 (971)
Q Consensus 842 ~~k~Li~LRks~pa-frlgt~~~i~~~v~f~~~g~~~~~gviv~~~~d~ 889 (971)
...+++++|+.+|. |+.|++..+.- .|+. ..-+|+|.|...
T Consensus 775 v~~~aL~lR~~~~elF~~GdY~Pl~~------~G~~-a~hviAFaR~~~ 816 (889)
T COG3280 775 VTAAALRLRREHPELFAGGDYLPLFA------AGPA-ADHVIAFARGKD 816 (889)
T ss_pred HHHHHHHHHHhchHhhcCCCeeeecc------cCch-hHHHHHHhhccC
Confidence 34589999999986 89998765431 1211 123888887654
No 148
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=34.89 E-value=62 Score=35.85 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEecCC
Q 002079 559 MVERLIIDDLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 559 mv~k~i~Dsl~~W~~ey~IDGFRfDlm~ 586 (971)
..++-+++|+..++++||+||.-+|--.
T Consensus 96 ~~~~~fv~S~~~~l~~~~fDGiDiDwE~ 123 (253)
T cd06544 96 SWVSNAVSSLTSIIQTYNLDGIDIDYEH 123 (253)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeeeccc
Confidence 4556678999999999999999999884
No 149
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=34.77 E-value=37 Score=39.50 Aligned_cols=25 Identities=12% Similarity=0.385 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeec
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYN 513 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyN 513 (971)
+++|++|++.||+.||+||.||-..
T Consensus 46 ~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 46 LERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHH
Confidence 5789999999999999999998653
No 150
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=33.46 E-value=47 Score=32.98 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHHhcCCEEEEEE
Q 002079 487 CRTIEFRRMVQALNHIGLHVVLDV 510 (971)
Q Consensus 487 ~ri~Efr~mV~alH~~Gi~VIlDv 510 (971)
.++.|++.+-+.+.++||+|++|=
T Consensus 19 ~s~~d~k~~kk~m~~~gIkV~Idk 42 (132)
T PF15640_consen 19 MSVKDIKNFKKEMGKRGIKVKIDK 42 (132)
T ss_pred eeHHHHHHHHHHHHhCCcEEEECC
Confidence 468999999999999999999983
No 151
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=33.15 E-value=74 Score=35.97 Aligned_cols=75 Identities=9% Similarity=0.060 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCEEEEEE-eeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 002079 490 IEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDv-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (971)
+|+|++|+-|.++||+||-.+ ++.|+.+-....+ +-..+.+ .+. ........++..++.+.+++.+.+
T Consensus 72 ~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~~p----~l~~~~~------~~~-~~~~~~~~l~~~~~~t~~fl~~l~ 140 (303)
T cd02742 72 AQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKSFP----KLLTECY------AGL-KLRDVFDPLDPTLPKGYDFLDDLF 140 (303)
T ss_pred HHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhCH----HhccCcc------ccC-CCCCCCCccCCCCccHHHHHHHHH
Confidence 599999999999999999887 5678754110000 0000111 000 001122346778888888888888
Q ss_pred HHHHHhC
Q 002079 569 LCWAVNY 575 (971)
Q Consensus 569 ~~W~~ey 575 (971)
..++.-+
T Consensus 141 ~e~~~lf 147 (303)
T cd02742 141 GEIAELF 147 (303)
T ss_pred HHHHHhC
Confidence 8887543
No 152
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=32.72 E-value=2.5e+02 Score=31.19 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (971)
+++.+++|+.++++|++|.+-+..-... -.+++.+.+
T Consensus 108 ~~~~~~~i~~ak~~G~~v~~~~~~a~~~-------------------------------------------~~~~~~~~~ 144 (266)
T cd07944 108 FDEALPLIKAIKEKGYEVFFNLMAISGY-------------------------------------------SDEELLELL 144 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecCC-------------------------------------------CHHHHHHHH
Confidence 7889999999999999877665553210 013455556
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002079 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 569 ~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i~ 604 (971)
+. +.++|+|.+++ |.+|.+.+..+.+...++++..
T Consensus 145 ~~-~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 145 EL-VNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred HH-HHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhc
Confidence 55 35789999997 9999999998888888877643
No 153
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.63 E-value=1.3e+02 Score=36.13 Aligned_cols=29 Identities=7% Similarity=0.258 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhcCCEEEEEE-eeccccC
Q 002079 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQG 517 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDv-VyNHt~~ 517 (971)
-+|+|++|+-++++||+||-.+ ++-|+.+
T Consensus 96 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 96 RADYIEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCCchhHHH
Confidence 3699999999999999999887 5678754
No 154
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.84 E-value=1.6e+02 Score=33.66 Aligned_cols=75 Identities=15% Similarity=0.034 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCEEEEEE-eeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCC--CCCCCCCHHHHHHHHH
Q 002079 490 IEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCM--NNTASEHYMVERLIID 566 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDv-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~--~d~a~e~~mv~k~i~D 566 (971)
+|+|++|+-|.++||+||-.+ ++.|+.+-.. ..|++=.. ..........+. +-++..++.+.+++.+
T Consensus 68 ~di~elv~yA~~rgI~vIPEId~PGH~~a~~~---------~ypel~~~-~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~ 137 (311)
T cd06570 68 EQIREVVAYARDRGIRVVPEIDVPGHASAIAV---------AYPELASG-PGPYVIERGWGVFEPLLDPTNEETYTFLDN 137 (311)
T ss_pred HHHHHHHHHHHHcCCEEEEeecCccchHHHHH---------hCHHhccC-CCccccccccccCCCccCCCChhHHHHHHH
Confidence 589999999999999999887 4677753110 00111000 000001111111 2357788888888888
Q ss_pred HHHHHHHh
Q 002079 567 DLLCWAVN 574 (971)
Q Consensus 567 sl~~W~~e 574 (971)
.+.-.+.-
T Consensus 138 l~~E~~~l 145 (311)
T cd06570 138 LFGEMAEL 145 (311)
T ss_pred HHHHHHHh
Confidence 77777643
No 155
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.73 E-value=80 Score=35.75 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhcCCEEEEEE-eeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDv-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (971)
.+|+|++|+-|.++||+||-.+ ++-|+.. .+. .|.|- ...+. ...+.-++..++...++|.+.
T Consensus 59 ~~ei~ei~~yA~~~gI~vIPeid~pGH~~~--------~l~--~~~~~-~l~~~-----~~~~~~l~~~~~~t~~fi~~l 122 (301)
T cd06565 59 KEEIREIDDYAAELGIEVIPLIQTLGHLEF--------ILK--HPEFR-HLREV-----DDPPQTLCPGEPKTYDFIEEM 122 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCHHHHHH--------HHh--Ccccc-ccccc-----CCCCCccCCCChhHHHHHHHH
Confidence 3599999999999999999765 3567632 111 12221 11111 112445678889999998888
Q ss_pred HHHHHHhCC
Q 002079 568 LLCWAVNYK 576 (971)
Q Consensus 568 l~~W~~ey~ 576 (971)
+...+.-+.
T Consensus 123 i~ev~~~f~ 131 (301)
T cd06565 123 IRQVLELHP 131 (301)
T ss_pred HHHHHHhCC
Confidence 888876543
No 156
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=30.42 E-value=95 Score=35.66 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCC
Q 002079 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMG 586 (971)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~ 586 (971)
.++..|+-++++++.|+++|++||.-+|-..
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 122 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEY 122 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeec
Confidence 4456788899999999999999999999653
No 157
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=28.96 E-value=50 Score=36.52 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=20.2
Q ss_pred CcccccccccchhhhhhHHHHHHcCCcEEEeC
Q 002079 357 RGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLL 388 (971)
Q Consensus 357 rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~Ll 388 (971)
.|++.-+.-.....-++|++++++|+++|++.
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiS 104 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEIS 104 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE-
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEec
Confidence 36665443333344578999999999999986
No 158
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=28.46 E-value=46 Score=38.32 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCEEEEEEee
Q 002079 490 IEFRRMVQALNHIGLHVVLDVVY 512 (971)
Q Consensus 490 ~Efr~mV~alH~~Gi~VIlDvVy 512 (971)
.-|+++++.+|+.||+||.||-.
T Consensus 49 ~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 49 HRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCH
Confidence 35999999999999999999854
No 159
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=28.38 E-value=4.3e+02 Score=30.07 Aligned_cols=108 Identities=16% Similarity=0.039 Sum_probs=63.0
Q ss_pred cCCCCCcCCCCCCCCCCCchhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCC-CCCCccCCCCCcceeecCCCCccccC
Q 002079 469 PVLWGVPKGSYASNPNGSCRTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPF-DDNSVLDKVVPGYYLRRNSDGFIEHS 547 (971)
Q Consensus 469 p~~y~ape~sYgt~~~g~~ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~-~~~s~lDk~vP~YY~r~~~~G~~~~s 547 (971)
++.--++|+||....+++-.++|+|.|. +.|..+|-=+-+--. ++... -+++ ..+-.|.|--..++ ++
T Consensus 43 ~f~llVVDps~~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~a-e~yR~Ywd~~-w~~~~p~wLg~edP-----~W 111 (300)
T COG2342 43 PFDLLVVDPSYCGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEA-ESYRFYWDKY-WLTGRPDWLGEEDP-----EW 111 (300)
T ss_pred CCcEEEEeccccCCCCCcCcHHHHHHHh----cCCeeEEEEEechhh-hhhhhHhhhh-hhcCCcccccCCCC-----CC
Confidence 4445578888876555556678887554 566555543333211 11110 0011 11122433322222 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCC
Q 002079 548 TCMNNTASEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHI 588 (971)
Q Consensus 548 tc~~d~a~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~ 588 (971)
.++-...+-++.-++.|.+-+...+ +.|+||.=+|.+.-.
T Consensus 112 ~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 112 PGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred CCCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechH
Confidence 4555678889999999998888866 679999999998654
No 160
>PF15260 FAM219A: Protein family FAM219A
Probab=28.30 E-value=23 Score=34.89 Aligned_cols=8 Identities=63% Similarity=1.913 Sum_probs=4.6
Q ss_pred eeecccCC
Q 002079 56 RCCCCCSS 63 (971)
Q Consensus 56 ~~~~~~~~ 63 (971)
+|||||++
T Consensus 112 ~~~~C~~~ 119 (125)
T PF15260_consen 112 SCCCCQPS 119 (125)
T ss_pred cccccCCC
Confidence 46666544
No 161
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=27.81 E-value=1.1e+02 Score=34.99 Aligned_cols=156 Identities=22% Similarity=0.283 Sum_probs=85.2
Q ss_pred ceEEEEEcccccccCCCCCCCCCcccccccccchhhhhhHHHHHHcCCcEEEeCCcccCCCCCcccccccccCCCCCccc
Q 002079 335 ISIYELHVRDFSVSDHTVHPDFRGGYLAFTLQNSAGVSHLKKLSNAGLTHVHLLPTFQFAGVDDRKENWKSVGSLPGLVF 414 (971)
Q Consensus 335 ~vIYElHVrdFs~~d~s~~~~~rG~y~g~~e~~s~~i~hL~~L~~lGvT~I~LlPvfd~~~v~e~~~~~~~~~~~~~~~~ 414 (971)
--||=++|.+=......+ ....|-|.==. ...+++++.+.++||.+|-|-|+.+-..-++
T Consensus 28 dLI~PlFV~eg~~~~~~I-~smPg~~r~si---d~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~---------------- 87 (324)
T PF00490_consen 28 DLIYPLFVVEGENEKEPI-SSMPGVYRYSI---DSLVKEVEEAVDLGIRAVILFGVIDPSKKDE---------------- 87 (324)
T ss_dssp GEEEEEEEESSSSSEEEE-TTSTTEEEEEH---HHHHHHHHHHHHTT--EEEEEEE-SCSC-BS----------------
T ss_pred HeEEEEEEecCCCcceec-cCCCCeeeeCH---HHHHHHHHHHHHCCCCEEEEEeeCCcccCCc----------------
Confidence 358888887643321110 12345553211 2467889999999999999999965432111
Q ss_pred cccCCCcccceeeecCccccchhhhhhcCCCCChHHHHHHHhhcCCCCCCCCCCcCCCCCcCCCCCCCCCCCchhHHHHH
Q 002079 415 FGQNTFSSWWIVCACGIKSFADAEVLEKLPPDSTEQQAQITAIQNDDGYNWGYNPVLWGVPKGSYASNPNGSCRTIEFRR 494 (971)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~q~~~~~~~~~d~~nWGYdp~~y~ape~sYgt~~~g~~ri~Efr~ 494 (971)
.|+.+-+++|. ..+
T Consensus 88 -------------------------------------------------------------~gs~a~~~~g~-----v~~ 101 (324)
T PF00490_consen 88 -------------------------------------------------------------EGSEAYNPDGL-----VQR 101 (324)
T ss_dssp -------------------------------------------------------------S-GGGGSTTSH-----HHH
T ss_pred -------------------------------------------------------------chhcccCCCCh-----HHH
Confidence 23334455554 444
Q ss_pred HHHHHHh--cCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 002079 495 MVQALNH--IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCWA 572 (971)
Q Consensus 495 mV~alH~--~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W~ 572 (971)
.|.++++ -.|-||-||-...-...|-.. +++ +.+|.+ .|...-+.+....+..+
T Consensus 102 air~iK~~~pdl~vi~Dvclc~YT~hGHcG---il~----------~~~g~i-----------dND~Tl~~Lak~Al~~A 157 (324)
T PF00490_consen 102 AIRAIKKAFPDLLVITDVCLCEYTSHGHCG---ILD----------DEDGEI-----------DNDETLERLAKQALSHA 157 (324)
T ss_dssp HHHHHHHHSTTSEEEEEE-STTTBTSSSSS---EB-----------CTTSSB-----------EHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEecccccccCCCceE---EEE----------CCCCeE-----------ecHHHHHHHHHHHHHHH
Confidence 4445544 379999999997665444211 111 223433 34455666776666678
Q ss_pred HhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002079 573 VNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 573 ~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~ 604 (971)
+. |.|-.- -+.|+...+..+|++|++..
T Consensus 158 ~A-GADiVA---PSdMMDGrV~aIR~aLd~~g 185 (324)
T PF00490_consen 158 EA-GADIVA---PSDMMDGRVGAIREALDEAG 185 (324)
T ss_dssp HH-T-SEEE---E-S--TTHHHHHHHHHHHTT
T ss_pred Hh-CCCeec---cccccCCHHHHHHHHHHhCC
Confidence 64 887653 34455566788888887753
No 162
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=27.50 E-value=4.1e+02 Score=25.28 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 002079 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (971)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (971)
.++|+++|++++ |+.|+-=++.+. .+..|.||.. .|. ++-
T Consensus 9 ~l~El~~L~~t~---g~~vv~~~~q~~-------------~~~~p~~~iG---~GK---------------------~ee 48 (95)
T PF13167_consen 9 SLEELEELAETA---GYEVVGTVVQKR-------------RKPDPKTYIG---SGK---------------------VEE 48 (95)
T ss_pred HHHHHHHHHHHC---CCeEEEEEEecC-------------CCCCcceeec---hhH---------------------HHH
Confidence 477888888886 899998888863 2344778853 232 233
Q ss_pred HHHHHHhCCccEEEEecCCCCcHHHHHHHHHHH
Q 002079 568 LLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHAL 600 (971)
Q Consensus 568 l~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al 600 (971)
++.++++.++|-+=||- .+.+.....+.+++
T Consensus 49 i~~~~~~~~~d~vvfd~--~Lsp~Q~rNLe~~~ 79 (95)
T PF13167_consen 49 IKELIEELDADLVVFDN--ELSPSQQRNLEKAL 79 (95)
T ss_pred HHHHHhhcCCCEEEECC--CCCHHHHHHHHHHH
Confidence 56677788999999995 46666655555554
No 163
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=26.74 E-value=2.7e+02 Score=29.58 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=44.9
Q ss_pred CccEEeCCeeEEEEEcCCC--CeEEEEEecCCCCCCCceEEecccCCCEEEEEeCC----CCCCceEEEEEEE
Q 002079 210 LGALYAEETVSLYLWAPTA--QSVSACIYRDPLGGNPLEVVQLKENDGVWSIKGPK----SWEGCYYVYEVSV 276 (971)
Q Consensus 210 LGa~~~~~~v~F~vWAPtA--~~V~L~ly~~~~~~~~~~~~~M~~~~GvW~v~~~~----~~~G~~Y~Y~v~~ 276 (971)
+|-+.. ...||-++-|.. ..+++.|.+..+...-...+++....|+-++++|. ...|+.|++.+..
T Consensus 28 ~g~T~~-~~PTf~~YvP~~~~~~~eF~L~d~~~~~iy~~~~~l~~~~GIv~i~LP~~~~~Le~gk~Y~W~~~l 99 (189)
T PF06051_consen 28 VGLTVS-EHPTFWFYVPYTSAETVEFVLQDEQGNPIYQTTFPLPQQPGIVSITLPEDQPPLEVGKTYRWYFSL 99 (189)
T ss_pred cccccC-CCCEEEEEecCCCCcceEEEEecCCCCEEeEEEEecCCCCCEEEEECCCCCCCCCCCCeEEEEEEE
Confidence 555543 468888888854 45666677765321112345567789999999983 3579999999975
No 164
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=26.58 E-value=2.3e+02 Score=32.63 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhc--CCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCC
Q 002079 479 YASNPNGSCRTIEFRRMVQALNHI--GLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASE 556 (971)
Q Consensus 479 Ygt~~~g~~ri~Efr~mV~alH~~--Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e 556 (971)
-+-+++|. +.+.|+++++. .|-||-||-+-.-...|--. +++ .+|. -.
T Consensus 86 ~a~~~~g~-----v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcG---il~-----------~~g~-----------vd 135 (320)
T cd04824 86 AADDEDGP-----VIQAIKLIREEFPELLIACDVCLCEYTSHGHCG---ILY-----------EDGT-----------IN 135 (320)
T ss_pred cccCCCCh-----HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcce---eEC-----------CCCc-----------Cc
Confidence 34455554 45555555554 89999999997654433210 111 1121 23
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002079 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 557 ~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~ 604 (971)
|...-+.+.+..+..++ -|.|=. +-+.|+...+..+|++|++-.
T Consensus 136 ND~Tl~~L~k~Avs~A~-AGADiV---APSdMMDGrV~aIR~aLD~~G 179 (320)
T cd04824 136 NEASVKRLAEVALAYAK-AGAHIV---APSDMMDGRVRAIKQALIQAG 179 (320)
T ss_pred CHHHHHHHHHHHHHHHH-hCCCEE---ecccccccHHHHHHHHHHHCC
Confidence 44556667776666675 476643 445556666778888887653
No 165
>PLN03059 beta-galactosidase; Provisional
Probab=25.71 E-value=1.2e+02 Score=39.15 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHhcCCEEEEE
Q 002079 489 TIEFRRMVQALNHIGLHVVLD 509 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlD 509 (971)
..++.++++.+++.||.||+=
T Consensus 97 ~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 97 RYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred hHHHHHHHHHHHHcCCEEEec
Confidence 358999999999999999985
No 166
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.71 E-value=1.8e+02 Score=33.88 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 002079 492 FRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDLLCW 571 (971)
Q Consensus 492 fr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl~~W 571 (971)
..+||+.+|++||+|+.=-|=+ +++ .+. .|+||.+..++ . .+. ..-|.+-+..+
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~----~~~-----~~~--~~~~~~~~~~~--~--------~~~-----~~~~~~~~~~~ 333 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLER----SGP-----LAS--GGGWYYQTIED--V--------INN-----DGDMYNVLDVL 333 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeec----Ccc-----ccc--Ccccccccccc--c--------ccc-----cccHHHHHHHH
Confidence 5789999999999998644422 111 121 36566543111 0 000 12244446667
Q ss_pred HHhCCccEEEEecC
Q 002079 572 AVNYKVDGFRFDLM 585 (971)
Q Consensus 572 ~~ey~IDGFRfDlm 585 (971)
+++.||||+=-|-.
T Consensus 334 ~~~~GvDGvftD~p 347 (356)
T cd08560 334 ARDVGILGIFSDWP 347 (356)
T ss_pred HHhcCCCEEEccCC
Confidence 77899999977754
No 167
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=25.32 E-value=1.2e+02 Score=35.01 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCccEEEEecC
Q 002079 557 HYMVERLIIDDLLCWAVNYKVDGFRFDLM 585 (971)
Q Consensus 557 ~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm 585 (971)
++..|+-++++++.++++|++||+-+|--
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 56788889999999999999999999988
No 168
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=24.94 E-value=3.7e+02 Score=30.91 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=52.7
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHhc--CCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCC
Q 002079 478 SYASNPNGSCRTIEFRRMVQALNHI--GLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTAS 555 (971)
Q Consensus 478 sYgt~~~g~~ri~Efr~mV~alH~~--Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~ 555 (971)
+-+-+|+|. ..+.|+++++. .|-||-||-...-...|-- |-+.+ + .-
T Consensus 82 s~A~~~~g~-----v~~air~iK~~~p~l~vi~DvcLc~YT~hGHc--------------------Gil~~-----~-~i 130 (314)
T cd00384 82 SEAYDPDGI-----VQRAIRAIKEAVPELVVITDVCLCEYTDHGHC--------------------GILKD-----D-YV 130 (314)
T ss_pred ccccCCCCh-----HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcc--------------------eeccC-----C-cC
Confidence 334455554 44555555543 8999999999765443321 11110 0 12
Q ss_pred CCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002079 556 EHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 556 e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~ 604 (971)
.|...-+.+....+..++ -|.|-. +-+.|+...+..+|++|.+-.
T Consensus 131 dND~Tl~~L~k~Als~A~-AGADiV---APSdMMDGrV~aIR~aLd~~g 175 (314)
T cd00384 131 DNDATLELLAKIAVSHAE-AGADIV---APSDMMDGRVAAIREALDEAG 175 (314)
T ss_pred ccHHHHHHHHHHHHHHHH-cCCCee---ecccccccHHHHHHHHHHHCC
Confidence 344555666666666675 476643 445556667778888887653
No 169
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=24.89 E-value=2.4e+02 Score=32.46 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=54.0
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHhc--CCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCC
Q 002079 477 GSYASNPNGSCRTIEFRRMVQALNHI--GLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTA 554 (971)
Q Consensus 477 ~sYgt~~~g~~ri~Efr~mV~alH~~--Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a 554 (971)
|+-+-+++|+ ..+-|+++++. .|-||-||-...-...|- +.++ + +|.
T Consensus 91 gs~A~~~~g~-----v~~air~iK~~~pdl~vi~DVcLc~YT~hGH-------cGil-------~-~g~----------- 139 (322)
T PRK13384 91 GSDTWDDNGL-----LARMVRTIKAAVPEMMVIPDICFCEYTDHGH-------CGVL-------H-NDE----------- 139 (322)
T ss_pred cccccCCCCh-----HHHHHHHHHHHCCCeEEEeeeecccCCCCCc-------eeec-------c-CCc-----------
Confidence 3334455554 44555555554 899999999876544332 1110 0 111
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002079 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 555 ~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~ 604 (971)
-.|...-+.+....+..++ -|.|=. +-+.|+...+..+|++|++-.
T Consensus 140 i~ND~Tl~~L~~~Als~A~-AGADiV---APSdMMDGrV~aIR~aLd~~g 185 (322)
T PRK13384 140 VDNDATVENLVKQSVTAAK-AGADML---APSAMMDGQVKAIRQGLDAAG 185 (322)
T ss_pred CccHHHHHHHHHHHHHHHH-cCCCeE---ecccccccHHHHHHHHHHHCC
Confidence 2345566666666666675 476643 445556667778888887653
No 170
>PLN02808 alpha-galactosidase
Probab=24.87 E-value=1.9e+02 Score=34.16 Aligned_cols=58 Identities=9% Similarity=0.177 Sum_probs=34.1
Q ss_pred CEEEEEEeCCCCcEEEEcC--CC--CC-CceEeecceeccccccccCcceeecCcEEEEcCceEEEEEE
Q 002079 904 SYIVVIFNSSPTEVSFVSP--AL--QG-KNLQLHPIQVKSVDEIVKNSSYEANSGCFVIPPRTTSVFVE 967 (971)
Q Consensus 904 ~~ivVv~N~s~~~~~~~lp--~~--~~-~~~~l~~~~~~~~d~~v~~~~~~~~~g~~tVpa~S~aVfv~ 967 (971)
+..|+++|.++++++++++ ++ .+ ..++++.+=. ..+.- .+. ..-+++|||..++||.-
T Consensus 321 ~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlWs-~~~~g----~~~-~~~~~~v~pHg~~~~rl 383 (386)
T PLN02808 321 RVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLWA-HSTQS----SVK-GQLSALVESHACKMYVL 383 (386)
T ss_pred CEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECCC-CCccC----ccc-ceEEEEECCceEEEEEE
Confidence 5789999999988877755 22 11 2355443221 11110 011 11268999999999975
No 171
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=24.76 E-value=4e+02 Score=23.96 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=35.4
Q ss_pred eeEEEEEcCC-CCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCC-CCC-----CceEEEEEEE
Q 002079 218 TVSLYLWAPT-AQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPK-SWE-----GCYYVYEVSV 276 (971)
Q Consensus 218 ~v~F~vWAPt-A~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~-~~~-----G~~Y~Y~v~~ 276 (971)
.++|.+..|. |.+|+|.||+... ...+++++ ....|.-++.-.+ +.. --.|.|+|..
T Consensus 13 ~~~~~~~l~~~a~~v~v~I~d~~G--~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 13 KGSIEYTLPEDADNVTVTIYDSNG--QVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTS---EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred EEEEEEeCCCcccEEEEEEEcCCC--CEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 5777877886 5679999999854 34566777 4455655554432 122 2258888864
No 172
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.65 E-value=4e+02 Score=28.79 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (971)
+++..+.|+.+++.|+.|.+.+..-.. | ..-.+++.+.+
T Consensus 114 ~~~~~~~i~~a~~~G~~v~~~~~~~~~---------------------------------~--------~~~~~~l~~~~ 152 (265)
T cd03174 114 LENAEEAIEAAKEAGLEVEGSLEDAFG---------------------------------C--------KTDPEYVLEVA 152 (265)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecC---------------------------------C--------CCCHHHHHHHH
Confidence 677889999999999988777643211 0 00113455556
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhcc
Q 002079 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLTK 605 (971)
Q Consensus 569 ~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i~p 605 (971)
+.+ .++|+|.+++ |..|.+.+..+.+....+++..+
T Consensus 153 ~~~-~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 153 KAL-EEAGADEISLKDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHH-HHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCC
Confidence 654 4789999999 99999999988888888877653
No 173
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=24.62 E-value=1.9e+02 Score=33.02 Aligned_cols=26 Identities=19% Similarity=0.407 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeecc
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNH 514 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNH 514 (971)
++..-+|-+.+...||+|++|+-|.-
T Consensus 103 ~~k~ieiakRAk~~GmKVl~dFHYSD 128 (403)
T COG3867 103 LKKAIEIAKRAKNLGMKVLLDFHYSD 128 (403)
T ss_pred HHHHHHHHHHHHhcCcEEEeeccchh
Confidence 44555666778889999999998753
No 174
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.54 E-value=5.1e+02 Score=28.93 Aligned_cols=78 Identities=12% Similarity=-0.000 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (971)
++..+++|+.+++.|+.|..-+-+......+. +. -.+++++.+
T Consensus 113 ~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~----------------~~---------------------~~~~~~~~~ 155 (274)
T cd07938 113 LERFEPVAELAKAAGLRVRGYVSTAFGCPYEG----------------EV---------------------PPERVAEVA 155 (274)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeEecCCCCC----------------CC---------------------CHHHHHHHH
Confidence 45688889999999999988877765421100 00 124666667
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002079 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 569 ~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i~ 604 (971)
+... ++|+|.+++ |.+|.+.+..+.+....|++..
T Consensus 156 ~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (274)
T cd07938 156 ERLL-DLGCDEISLGDTIGVATPAQVRRLLEAVLERF 191 (274)
T ss_pred HHHH-HcCCCEEEECCCCCccCHHHHHHHHHHHHHHC
Confidence 7654 689999998 9999999888877777777654
No 175
>TIGR03356 BGL beta-galactosidase.
Probab=24.38 E-value=1.5e+02 Score=35.40 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHhcCCEEEEEEe
Q 002079 488 RTIEFRRMVQALNHIGLHVVLDVV 511 (971)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDvV 511 (971)
.++-+++||++|+++||++|+++.
T Consensus 92 ~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 92 GLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHHHHHHHHHHHHcCCeeEEeec
Confidence 367799999999999999999985
No 176
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.94 E-value=4.8e+02 Score=29.12 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (971)
++.++++|+.+++.|++|+.-+.+-.. +.+ -.+++.+.+
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~~~---~~~--------------------------------------~~~~~~~~~ 155 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYTGS---PVH--------------------------------------TLEYYVKLA 155 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCC---CCC--------------------------------------CHHHHHHHH
Confidence 567888888888889888764433111 000 113455555
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhh
Q 002079 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSL 603 (971)
Q Consensus 569 ~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i 603 (971)
+.. .++|+|-+++ |.+|.+.+..+.+...++++.
T Consensus 156 ~~~-~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 156 KEL-EDMGADSICIKDMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred HHH-HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 554 4789999998 999999999888877777764
No 177
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=23.72 E-value=5e+02 Score=29.16 Aligned_cols=76 Identities=8% Similarity=0.088 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 002079 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (971)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (971)
-+++++++|+.+++.|++|.+.+- +.+. .| |.+ ..++.+.
T Consensus 113 ~l~~~~~~i~~a~~~G~~v~~~~~--d~~~----------------~~-r~~---------------------~~~~~~~ 152 (280)
T cd07945 113 HFADIREVIEYAIKNGIEVNIYLE--DWSN----------------GM-RDS---------------------PDYVFQL 152 (280)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEE--eCCC----------------CC-cCC---------------------HHHHHHH
Confidence 367899999999999998776543 2210 11 111 1367777
Q ss_pred HHHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002079 568 LLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 568 l~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i~ 604 (971)
++... ++|+|-+++ |.+|...+..+.+....+++..
T Consensus 153 ~~~~~-~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~ 189 (280)
T cd07945 153 VDFLS-DLPIKRIMLPDTLGILSPFETYTYISDMVKRY 189 (280)
T ss_pred HHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHHhhC
Confidence 77765 689999887 9999999988888777777644
No 178
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.34 E-value=1.4e+02 Score=28.81 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHcCCcEEEeCC
Q 002079 369 AGVSHLKKLSNAGLTHVHLLP 389 (971)
Q Consensus 369 ~~i~hL~~L~~lGvT~I~LlP 389 (971)
...+.|+++.++|+.++|+.|
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-T
T ss_pred HHHHHHHHHHHcCCCEEEEEc
Confidence 456789999999999999986
No 179
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.20 E-value=4.6e+02 Score=28.83 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (971)
++.++++|+.++++|+.|. +|-... .|.+ .+++.+.+
T Consensus 109 ~~~~~~~i~~a~~~G~~v~----~~~~~~------------------~~~~---------------------~~~~~~~~ 145 (259)
T cd07939 109 LDQLRRLVGRAKDRGLFVS----VGAEDA------------------SRAD---------------------PDFLIEFA 145 (259)
T ss_pred HHHHHHHHHHHHHCCCeEE----EeeccC------------------CCCC---------------------HHHHHHHH
Confidence 5678999999999999876 332210 0000 13555555
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002079 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 569 ~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i~ 604 (971)
+.. .++|+|.+++ |.+|.+.+..+.+....+++..
T Consensus 146 ~~~-~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 146 EVA-QEAGADRLRFADTVGILDPFTTYELIRRLRAAT 181 (259)
T ss_pred HHH-HHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 554 4789999998 8899999988887777777643
No 180
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=22.93 E-value=38 Score=28.23 Aligned_cols=11 Identities=64% Similarity=1.793 Sum_probs=6.0
Q ss_pred cCCcceeeccc
Q 002079 51 VHPRFRCCCCC 61 (971)
Q Consensus 51 ~~~~~~~~~~~ 61 (971)
|-|---|||||
T Consensus 21 vapggcccccc 31 (56)
T TIGR03602 21 VAPGGCCCCCC 31 (56)
T ss_pred ecCCCeEEEec
Confidence 55665555544
No 181
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=22.91 E-value=4.4e+02 Score=30.73 Aligned_cols=79 Identities=11% Similarity=-0.024 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 002079 488 RTIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDD 567 (971)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Ds 567 (971)
-+++++++|+.+++.|++|..-+-+--. .+ |..|. -.+++++.
T Consensus 160 ~l~~~~~~v~~Ak~~Gl~v~~~is~~fg---~p-------------~~~r~---------------------~~~~l~~~ 202 (347)
T PLN02746 160 SLVRYREVALAAKKHSIPVRGYVSCVVG---CP-------------IEGPV---------------------PPSKVAYV 202 (347)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEeeec---CC-------------ccCCC---------------------CHHHHHHH
Confidence 3667889999999999998543322100 00 11111 12466777
Q ss_pred HHHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002079 568 LLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 568 l~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i~ 604 (971)
++..+ +.|+|-+++ |.+|...+..+.++..+|++..
T Consensus 203 ~~~~~-~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 203 AKELY-DMGCYEISLGDTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHH-HcCCCEEEecCCcCCcCHHHHHHHHHHHHHhC
Confidence 77765 689998887 9999999988887777776644
No 182
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=22.91 E-value=3.4e+02 Score=31.27 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=53.8
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHhc--CCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCC
Q 002079 477 GSYASNPNGSCRTIEFRRMVQALNHI--GLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTA 554 (971)
Q Consensus 477 ~sYgt~~~g~~ri~Efr~mV~alH~~--Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a 554 (971)
|+.+-+++|+ +.+-|+++++. .|-||-||-+-+-...|-- |-+.+ + .
T Consensus 86 gs~A~~~~g~-----v~~air~iK~~~p~l~vi~DVclc~YT~hGHc--------------------Gil~~-----~-~ 134 (320)
T cd04823 86 GSEAYNPDNL-----VCRAIRAIKEAFPELGIITDVALDPYTSHGHD--------------------GIVRD-----G-G 134 (320)
T ss_pred cccccCCCCh-----HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcc--------------------eeccC-----C-c
Confidence 3445555554 44444455543 8999999999765543321 11110 0 1
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002079 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 555 ~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~ 604 (971)
-.|...-+.+....+..++ -|.|=. +-+.|+......+|++|++..
T Consensus 135 idND~Tl~~L~~~Avs~A~-AGADiV---APSdMMDGrV~aIR~aLd~~g 180 (320)
T cd04823 135 ILNDETVEVLCKQALVQAE-AGADIV---APSDMMDGRIGAIREALDAEG 180 (320)
T ss_pred CcCHHHHHHHHHHHHHHHH-hCCCEE---EcccchhhHHHHHHHHHHHCC
Confidence 3455666677777777775 476643 345555666777888877653
No 183
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=22.43 E-value=56 Score=36.86 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=19.6
Q ss_pred hhHH-HHHHHHHHHhcCCEEEEEEe
Q 002079 488 RTIE-FRRMVQALNHIGLHVVLDVV 511 (971)
Q Consensus 488 ri~E-fr~mV~alH~~Gi~VIlDvV 511 (971)
-|+| .|+||+++++. |.||||+-
T Consensus 134 ~IKE~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred CHHHHHHHHHHHhcce-eEEEeecc
Confidence 3665 79999999988 99999974
No 184
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=22.37 E-value=2e+02 Score=31.05 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhcCCEEEE
Q 002079 489 TIEFRRMVQALNHIGLHVVL 508 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIl 508 (971)
.++++++.+.+.+.|++|++
T Consensus 192 ~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 192 SADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCeEEe
Confidence 45788888889999999974
No 185
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.30 E-value=8.5e+02 Score=28.36 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHhcCCEEEEEE-eeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 002079 488 RTIEFRRMVQALNHIGLHVVLDV-VYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIID 566 (971)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDv-VyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~D 566 (971)
.+..+++++++||+.||-+|+.+ +|-.... ..++ ..| +... -++|..
T Consensus 141 ~~~~l~rv~~ec~~~giPlllE~l~y~~~~~----~~~~------~~~-------------------a~~~---p~~V~~ 188 (340)
T PRK12858 141 KHAFVERVGAECRANDIPFFLEPLTYDGKGS----DKKA------EEF-------------------AKVK---PEKVIK 188 (340)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEeccCCCcc----cccc------ccc-------------------cccC---HHHHHH
Confidence 35679999999999999999985 6654211 1000 001 0111 247899
Q ss_pred HHHHHHH-hCCccEEEEecCCCC
Q 002079 567 DLLCWAV-NYKVDGFRFDLMGHI 588 (971)
Q Consensus 567 sl~~W~~-ey~IDGFRfDlm~~~ 588 (971)
+++...+ +||+|=+-....+.+
T Consensus 189 a~r~~~~~elGaDvlKve~p~~~ 211 (340)
T PRK12858 189 TMEEFSKPRYGVDVLKVEVPVDM 211 (340)
T ss_pred HHHHHhhhccCCeEEEeeCCCCc
Confidence 9999887 799998888776554
No 186
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=22.29 E-value=71 Score=29.30 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=20.9
Q ss_pred hhhhHHHHHHcCCcEEEeCCcccCC
Q 002079 370 GVSHLKKLSNAGLTHVHLLPTFQFA 394 (971)
Q Consensus 370 ~i~hL~~L~~lGvT~I~LlPvfd~~ 394 (971)
.-+-|+.|++.|+++|.++|+|-+.
T Consensus 47 i~~~l~~l~~~g~~~vvvvPl~~~~ 71 (101)
T cd03409 47 TEEAIRELAEEGYQRVVIVPLAPVS 71 (101)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcccc
Confidence 3455888888999999999999874
No 187
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=22.01 E-value=2.8e+02 Score=31.98 Aligned_cols=93 Identities=24% Similarity=0.290 Sum_probs=53.3
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHh--cCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCC
Q 002079 477 GSYASNPNGSCRTIEFRRMVQALNH--IGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTA 554 (971)
Q Consensus 477 ~sYgt~~~g~~ri~Efr~mV~alH~--~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a 554 (971)
|+-+-+++|. +.+.|+++++ -.|-||-||-+..-...|- .|-+.+ . -
T Consensus 89 gs~A~~~~g~-----v~rair~iK~~~p~l~vi~DVcLc~YT~hGH--------------------cGil~~-g-----~ 137 (323)
T PRK09283 89 GSEAYNPDGL-----VQRAIRAIKKAFPELGVITDVCLDEYTSHGH--------------------CGILED-G-----Y 137 (323)
T ss_pred cccccCCCCH-----HHHHHHHHHHhCCCcEEEEeeeccCCCCCCc--------------------eecccC-C-----c
Confidence 3344455554 4444555554 4899999999976544332 111111 0 1
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCccEEEEecCCCCcHHHHHHHHHHHHhhc
Q 002079 555 SEHYMVERLIIDDLLCWAVNYKVDGFRFDLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 555 ~e~~mv~k~i~Dsl~~W~~ey~IDGFRfDlm~~~~~~~~~~~~~al~~i~ 604 (971)
-.|...-+.+.+..+..++ -|.|=. +-+.|+...+..+|++|++-.
T Consensus 138 idND~Tl~~L~~~Al~~A~-AGaDiV---APSdMMDGrV~aIR~aLd~~g 183 (323)
T PRK09283 138 VDNDETLELLAKQALSQAE-AGADIV---APSDMMDGRVGAIREALDEAG 183 (323)
T ss_pred CcCHHHHHHHHHHHHHHHH-hCCCEE---EcccccccHHHHHHHHHHHCC
Confidence 1344555666666666675 477643 345556667778888887653
No 188
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=21.88 E-value=3.3e+02 Score=30.51 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=37.7
Q ss_pred CeeEEEEEcC-CCCeEEEEEecCCCCCCCceEEec-ccCCCEEEEEeCC-------CCCCceEEEEEEEe
Q 002079 217 ETVSLYLWAP-TAQSVSACIYRDPLGGNPLEVVQL-KENDGVWSIKGPK-------SWEGCYYVYEVSVY 277 (971)
Q Consensus 217 ~~v~F~vWAP-tA~~V~L~ly~~~~~~~~~~~~~M-~~~~GvW~v~~~~-------~~~G~~Y~Y~v~~~ 277 (971)
+.+.|++-.| .|.+|+|.||+... +..+.+++ ....|.-.+...+ ..+| .|.|+|...
T Consensus 128 ~~~~~~~~l~~~a~~v~v~I~D~~G--~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G-~Yt~~v~A~ 194 (259)
T PRK12812 128 ELIALKLYFPEDSDEGTLEIYDSNN--KLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDG-EYTIKAVYN 194 (259)
T ss_pred ceeEEEEecCCcCceEEEEEEeCCC--CEEEEEecCCCCCcceeEEECCCCCCCCcCCCe-eeEEEEEEE
Confidence 3678888767 56789999998754 34567778 4556654444443 1233 488888743
No 189
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=21.84 E-value=2.2e+02 Score=26.57 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=35.2
Q ss_pred eeEEEEEcCCC---CeEEEEE-ecCCCCCCCceEEec-ccCCCEEEEEeCCCCCC--ceEEEEEE
Q 002079 218 TVSLYLWAPTA---QSVSACI-YRDPLGGNPLEVVQL-KENDGVWSIKGPKSWEG--CYYVYEVS 275 (971)
Q Consensus 218 ~v~F~vWAPtA---~~V~L~l-y~~~~~~~~~~~~~M-~~~~GvW~v~~~~~~~G--~~Y~Y~v~ 275 (971)
.|+|+|-.|.- ++|.|+- -.....+.+...++| ......|++.++-.... ..|+|-+.
T Consensus 1 ~v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~ 65 (99)
T cd05816 1 VVQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIA 65 (99)
T ss_pred CEEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEE
Confidence 37899999853 4565541 111223345567789 45667898887643322 35877775
No 190
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.70 E-value=4.9e+02 Score=30.08 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002079 562 RLIIDDLLCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 562 k~i~Dsl~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i~ 604 (971)
+++.+.++. +.++|+|.+++ |.+|.+.+..+.+...++++..
T Consensus 144 e~l~~~a~~-~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 144 EKLAEQAKL-MESYGAQCVYVVDSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred HHHHHHHHH-HHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 345555555 45799999996 9999999988887777776543
No 191
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.36 E-value=5e+02 Score=28.65 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHhcCCEEEEEEeeccccCCCCCCCCCccCCCCCcceeecCCCCccccCCCCCCCCCCCHHHHHHHHHHH
Q 002079 489 TIEFRRMVQALNHIGLHVVLDVVYNHLQGSGPFDDNSVLDKVVPGYYLRRNSDGFIEHSTCMNNTASEHYMVERLIIDDL 568 (971)
Q Consensus 489 i~Efr~mV~alH~~Gi~VIlDvVyNHt~~~g~~~~~s~lDk~vP~YY~r~~~~G~~~~stc~~d~a~e~~mv~k~i~Dsl 568 (971)
+++++++|+.+++.|++|. |+-... + +. -.+++.+.+
T Consensus 113 ~~~~~~~i~~a~~~G~~v~----~~~~~~-~-----------------~~---------------------~~~~~~~~~ 149 (268)
T cd07940 113 LERAVEAVEYAKSHGLDVE----FSAEDA-T-----------------RT---------------------DLDFLIEVV 149 (268)
T ss_pred HHHHHHHHHHHHHcCCeEE----EeeecC-C-----------------CC---------------------CHHHHHHHH
Confidence 5678899999999999876 331100 0 00 013455555
Q ss_pred HHHHHhCCccEEEE-ecCCCCcHHHHHHHHHHHHhhc
Q 002079 569 LCWAVNYKVDGFRF-DLMGHIMKSTMMKAKHALHSLT 604 (971)
Q Consensus 569 ~~W~~ey~IDGFRf-Dlm~~~~~~~~~~~~~al~~i~ 604 (971)
+.. .++|+|.+++ |..|.+.+..+.+....+++..
T Consensus 150 ~~~-~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 150 EAA-IEAGATTINIPDTVGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred HHH-HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhC
Confidence 554 4689999998 8999999888877777777654
No 192
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=21.19 E-value=1.6e+02 Score=34.74 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCEEEEEE
Q 002079 491 EFRRMVQALNHIGLHVVLDV 510 (971)
Q Consensus 491 Efr~mV~alH~~Gi~VIlDv 510 (971)
-+.+.|+.+.++||+|++|+
T Consensus 117 ~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 117 ILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred HHHHHHHHHHhcCeeEEEEe
Confidence 45666999999999999995
No 193
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=20.82 E-value=84 Score=35.43 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHhcCCEEEEEEe
Q 002079 488 RTIEFRRMVQALNHIGLHVVLDVV 511 (971)
Q Consensus 488 ri~Efr~mV~alH~~Gi~VIlDvV 511 (971)
.++|+|++.+-||++||.|.||.-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 578999999999999999999964
No 194
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=20.09 E-value=2e+02 Score=27.05 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=33.1
Q ss_pred eEEEEEcCCC--CeEEEEEec-CCCCCCCceEEec-ccCCCEEEEEeCCC-CCCceEEEEEE
Q 002079 219 VSLYLWAPTA--QSVSACIYR-DPLGGNPLEVVQL-KENDGVWSIKGPKS-WEGCYYVYEVS 275 (971)
Q Consensus 219 v~F~vWAPtA--~~V~L~ly~-~~~~~~~~~~~~M-~~~~GvW~v~~~~~-~~G~~Y~Y~v~ 275 (971)
++|++-+++. ++|.|+--. +-..+.+...++| ...+..|++.+.-. .....|+|-+.
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i~ 63 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFVS 63 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEEE
Confidence 6788888865 556554211 1122344566788 45567898887532 22345777664
Done!