Query 002081
Match_columns 971
No_of_seqs 633 out of 2270
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 16:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 1E-35 2.2E-40 350.8 1.1 528 442-969 2-582 (590)
2 KOG1032 Uncharacterized conser 100.0 5.8E-33 1.3E-37 327.6 15.3 289 653-969 117-436 (590)
3 cd04016 C2_Tollip C2 domain pr 99.8 2.9E-19 6.4E-24 172.0 16.0 117 2-125 3-121 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.8 4.7E-19 1E-23 172.2 14.7 120 3-124 1-126 (126)
5 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.6E-18 7.9E-23 170.9 16.7 126 3-128 2-134 (150)
6 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.7E-18 8E-23 166.1 14.6 121 2-126 1-126 (127)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.9E-18 2.1E-22 161.7 15.8 120 2-127 1-121 (121)
8 cd08379 C2D_MCTP_PRT_plant C2 99.8 8.9E-18 1.9E-22 162.8 14.2 115 3-121 2-125 (126)
9 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.5E-17 3.2E-22 160.6 15.1 118 3-125 2-121 (121)
10 cd04024 C2A_Synaptotagmin-like 99.8 1.6E-17 3.5E-22 161.4 15.3 124 2-125 2-128 (128)
11 cd08378 C2B_MCTP_PRT_plant C2 99.7 2.7E-17 5.9E-22 158.8 14.0 116 3-126 2-120 (121)
12 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 3.5E-17 7.6E-22 160.3 14.8 123 2-126 1-133 (133)
13 cd08376 C2B_MCTP_PRT C2 domain 99.7 7.8E-17 1.7E-21 154.1 15.4 113 3-126 2-115 (116)
14 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 8.2E-17 1.8E-21 155.7 15.6 119 2-123 1-122 (123)
15 cd08681 C2_fungal_Inn1p-like C 99.7 4.5E-17 9.8E-22 156.2 13.3 115 2-125 2-118 (118)
16 cd08678 C2_C21orf25-like C2 do 99.7 1E-16 2.2E-21 155.8 15.6 120 3-128 1-122 (126)
17 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.6E-16 3.4E-21 152.5 16.1 117 2-125 2-118 (119)
18 cd04017 C2D_Ferlin C2 domain f 99.7 1.5E-16 3.2E-21 156.6 16.2 122 2-128 2-134 (135)
19 cd04046 C2_Calpain C2 domain p 99.7 1.9E-16 4E-21 154.0 16.6 121 2-128 4-124 (126)
20 cd08375 C2_Intersectin C2 doma 99.7 2E-16 4.3E-21 155.9 16.0 117 2-125 16-135 (136)
21 cd04027 C2B_Munc13 C2 domain s 99.7 1.7E-16 3.7E-21 154.5 15.0 115 2-123 2-127 (127)
22 cd08400 C2_Ras_p21A1 C2 domain 99.7 3.1E-16 6.7E-21 152.5 16.7 118 2-127 5-124 (126)
23 KOG1030 Predicted Ca2+-depende 99.7 7.4E-17 1.6E-21 159.2 10.9 91 2-92 7-97 (168)
24 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.7E-16 8.1E-21 150.8 15.6 118 3-124 2-120 (121)
25 cd04010 C2B_RasA3 C2 domain se 99.7 1.3E-16 2.9E-21 159.0 12.6 118 2-123 1-147 (148)
26 cd08381 C2B_PI3K_class_II C2 d 99.7 2.8E-16 6.2E-21 151.9 12.6 99 2-104 14-121 (122)
27 PF02893 GRAM: GRAM domain; I 99.7 3.4E-17 7.4E-22 142.1 5.4 67 645-711 1-69 (69)
28 cd08382 C2_Smurf-like C2 domai 99.7 6E-16 1.3E-20 149.8 14.7 119 2-123 1-122 (123)
29 cd04036 C2_cPLA2 C2 domain pre 99.7 4.7E-16 1E-20 149.5 13.9 113 3-126 2-118 (119)
30 cd04015 C2_plant_PLD C2 domain 99.7 9.4E-16 2E-20 154.9 16.7 119 2-125 8-157 (158)
31 cd08395 C2C_Munc13 C2 domain t 99.7 5E-16 1.1E-20 149.3 12.4 102 2-107 1-113 (120)
32 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.1E-15 2.3E-20 147.0 14.5 113 2-125 2-121 (121)
33 cd04050 C2B_Synaptotagmin-like 99.7 6.5E-16 1.4E-20 145.3 12.3 101 3-107 2-103 (105)
34 cd04028 C2B_RIM1alpha C2 domai 99.7 8.6E-16 1.9E-20 152.5 13.6 105 2-109 30-141 (146)
35 cd08392 C2A_SLP-3 C2 domain fi 99.7 6E-16 1.3E-20 150.9 12.2 104 2-105 16-128 (128)
36 cd08677 C2A_Synaptotagmin-13 C 99.7 6.1E-16 1.3E-20 147.2 11.7 97 2-104 15-118 (118)
37 cd08394 C2A_Munc13 C2 domain f 99.7 1.1E-15 2.4E-20 146.9 13.3 100 2-107 3-102 (127)
38 cd08688 C2_KIAA0528-like C2 do 99.7 8.5E-16 1.8E-20 145.8 12.3 104 3-106 1-109 (110)
39 cd08393 C2A_SLP-1_2 C2 domain 99.6 8.8E-16 1.9E-20 149.1 12.0 101 2-105 16-125 (125)
40 cd04043 C2_Munc13_fungal C2 do 99.6 4.1E-15 8.9E-20 144.3 16.1 118 2-128 2-123 (126)
41 cd04029 C2A_SLP-4_5 C2 domain 99.6 2.6E-15 5.7E-20 145.8 12.9 101 2-105 16-125 (125)
42 cd04014 C2_PKC_epsilon C2 doma 99.6 8.3E-15 1.8E-19 143.5 16.4 115 2-127 5-130 (132)
43 cd04044 C2A_Tricalbin-like C2 99.6 3.9E-15 8.4E-20 143.7 13.8 119 2-127 3-124 (124)
44 cd08373 C2A_Ferlin C2 domain f 99.6 8.2E-15 1.8E-19 142.6 15.5 116 7-130 2-120 (127)
45 cd04018 C2C_Ferlin C2 domain t 99.6 3.9E-15 8.4E-20 148.8 13.0 107 2-108 1-127 (151)
46 cd04011 C2B_Ferlin C2 domain s 99.6 3.9E-15 8.4E-20 141.4 12.3 101 2-106 5-110 (111)
47 cd04051 C2_SRC2_like C2 domain 99.6 3.9E-15 8.4E-20 144.3 11.6 116 2-121 1-125 (125)
48 cd04031 C2A_RIM1alpha C2 domai 99.6 5.6E-15 1.2E-19 143.0 12.5 101 1-105 16-125 (125)
49 cd08685 C2_RGS-like C2 domain 99.6 4.5E-15 9.8E-20 142.9 11.7 100 1-104 12-119 (119)
50 cd08387 C2A_Synaptotagmin-8 C2 99.6 6.6E-15 1.4E-19 142.6 12.7 101 2-105 17-123 (124)
51 cd08385 C2A_Synaptotagmin-1-5- 99.6 8.7E-15 1.9E-19 141.7 13.3 101 2-105 17-123 (124)
52 cd08386 C2A_Synaptotagmin-7 C2 99.6 8.6E-15 1.9E-19 141.8 13.3 103 1-106 16-125 (125)
53 cd08388 C2A_Synaptotagmin-4-11 99.6 1E-14 2.2E-19 142.3 12.9 104 2-106 17-128 (128)
54 cd04013 C2_SynGAP_like C2 doma 99.6 2.5E-14 5.3E-19 141.8 15.5 119 2-128 12-141 (146)
55 cd04041 C2A_fungal C2 domain f 99.6 6.2E-15 1.4E-19 140.1 10.7 98 2-105 2-107 (111)
56 cd08691 C2_NEDL1-like C2 domai 99.6 3.2E-14 6.9E-19 140.1 15.4 118 2-123 2-136 (137)
57 cd08680 C2_Kibra C2 domain fou 99.6 9.9E-15 2.1E-19 141.4 11.6 101 2-104 15-124 (124)
58 cd04030 C2C_KIAA1228 C2 domain 99.6 1.8E-14 4E-19 139.8 13.3 101 2-105 17-127 (127)
59 cd04039 C2_PSD C2 domain prese 99.6 1.5E-14 3.3E-19 136.8 12.2 91 2-92 2-98 (108)
60 cd08389 C2A_Synaptotagmin-14_1 99.6 1.6E-14 3.4E-19 140.2 12.5 102 1-106 16-124 (124)
61 KOG1028 Ca2+-dependent phospho 99.6 1.7E-14 3.6E-19 167.0 14.9 150 2-162 168-323 (421)
62 smart00568 GRAM domain in gluc 99.6 3.4E-15 7.4E-20 126.3 6.7 59 652-710 1-60 (61)
63 cd08383 C2A_RasGAP C2 domain ( 99.6 3.1E-14 6.7E-19 136.1 14.0 112 3-125 2-117 (117)
64 cd08521 C2A_SLP C2 domain firs 99.6 3.6E-14 7.8E-19 136.9 13.0 101 1-104 14-123 (123)
65 cd04049 C2_putative_Elicitor-r 99.5 4.6E-14 9.9E-19 136.7 13.0 104 2-108 2-110 (124)
66 cd04021 C2_E3_ubiquitin_ligase 99.5 1.2E-13 2.6E-18 134.2 14.9 119 2-123 3-124 (125)
67 cd04045 C2C_Tricalbin-like C2 99.5 6.7E-14 1.5E-18 135.0 12.9 103 2-108 2-105 (120)
68 cd00275 C2_PLC_like C2 domain 99.5 1.3E-13 2.8E-18 133.8 15.0 116 1-125 2-127 (128)
69 cd08390 C2A_Synaptotagmin-15-1 99.5 7.3E-14 1.6E-18 134.9 12.9 102 2-106 15-123 (123)
70 cd08675 C2B_RasGAP C2 domain s 99.5 5.3E-14 1.2E-18 138.9 12.0 102 3-108 1-122 (137)
71 cd04038 C2_ArfGAP C2 domain pr 99.5 6.7E-14 1.4E-18 139.2 12.5 90 2-92 3-92 (145)
72 cd04009 C2B_Munc13-like C2 dom 99.5 5.2E-14 1.1E-18 138.2 11.4 94 1-94 16-121 (133)
73 cd08690 C2_Freud-1 C2 domain f 99.5 2E-13 4.4E-18 136.7 15.5 118 3-127 4-138 (155)
74 cd04040 C2D_Tricalbin-like C2 99.5 1.2E-13 2.7E-18 131.7 13.3 112 3-121 1-114 (115)
75 cd08676 C2A_Munc13-like C2 dom 99.5 8.5E-14 1.8E-18 139.4 11.6 96 1-104 28-153 (153)
76 KOG0696 Serine/threonine prote 99.5 7.1E-15 1.5E-19 160.9 3.8 103 2-108 181-290 (683)
77 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 1.3E-13 2.8E-18 140.0 12.4 102 2-106 28-138 (162)
78 cd04032 C2_Perforin C2 domain 99.5 1.2E-13 2.7E-18 134.1 11.1 88 2-90 29-118 (127)
79 cd08384 C2B_Rabphilin_Doc2 C2 99.5 5.3E-14 1.2E-18 137.9 8.5 102 2-108 14-123 (133)
80 cd08406 C2B_Synaptotagmin-12 C 99.5 4.2E-14 9.2E-19 139.2 7.8 101 2-107 16-124 (136)
81 cd08404 C2B_Synaptotagmin-4 C2 99.5 5.9E-14 1.3E-18 138.3 8.7 103 1-108 15-125 (136)
82 KOG0696 Serine/threonine prote 99.5 7.8E-15 1.7E-19 160.6 1.5 100 523-625 159-314 (683)
83 cd04026 C2_PKC_alpha_gamma C2 99.5 3.5E-13 7.7E-18 131.7 11.8 102 2-107 14-122 (131)
84 PLN03008 Phospholipase D delta 99.5 4.7E-13 1E-17 160.7 14.9 107 20-131 75-182 (868)
85 cd04037 C2E_Ferlin C2 domain f 99.5 5E-13 1.1E-17 129.7 12.2 88 3-90 2-92 (124)
86 cd08407 C2B_Synaptotagmin-13 C 99.5 4.7E-13 1E-17 131.9 12.1 87 2-88 16-112 (138)
87 cd08402 C2B_Synaptotagmin-1 C2 99.5 5.4E-13 1.2E-17 131.4 12.3 102 1-107 15-124 (136)
88 cd04052 C2B_Tricalbin-like C2 99.4 7.3E-13 1.6E-17 125.9 12.5 100 18-127 9-110 (111)
89 cd08405 C2B_Synaptotagmin-7 C2 99.4 6.9E-13 1.5E-17 130.7 12.4 103 1-108 15-125 (136)
90 cd08408 C2B_Synaptotagmin-14_1 99.4 7.1E-13 1.5E-17 131.0 11.7 101 2-106 16-125 (138)
91 cd08410 C2B_Synaptotagmin-17 C 99.4 3.4E-13 7.3E-18 132.8 8.5 103 2-108 15-125 (135)
92 cd04048 C2A_Copine C2 domain f 99.4 7.9E-13 1.7E-17 127.4 10.6 97 6-105 5-113 (120)
93 cd08692 C2B_Tac2-N C2 domain s 99.4 1.2E-12 2.5E-17 127.8 11.7 88 2-89 15-110 (135)
94 cd08403 C2B_Synaptotagmin-3-5- 99.4 1.6E-12 3.5E-17 127.7 12.3 103 1-108 14-124 (134)
95 cd00276 C2B_Synaptotagmin C2 d 99.4 4.4E-13 9.5E-18 131.2 7.6 102 2-108 15-124 (134)
96 cd08409 C2B_Synaptotagmin-15 C 99.4 9.8E-13 2.1E-17 129.9 8.1 101 2-106 16-124 (137)
97 cd04035 C2A_Rabphilin_Doc2 C2 99.4 5.4E-12 1.2E-16 122.0 12.4 89 2-91 16-113 (123)
98 COG5038 Ca2+-dependent lipid-b 99.3 5.7E-10 1.2E-14 136.2 30.8 121 3-130 438-561 (1227)
99 KOG1011 Neurotransmitter relea 99.3 2.1E-12 4.6E-17 146.4 9.0 120 2-128 296-426 (1283)
100 cd08686 C2_ABR C2 domain in th 99.3 6.5E-12 1.4E-16 119.4 10.7 80 3-88 1-92 (118)
101 KOG2059 Ras GTPase-activating 99.3 5.3E-12 1.2E-16 146.2 11.1 123 2-130 6-129 (800)
102 PLN03200 cellulose synthase-in 99.3 6.8E-12 1.5E-16 163.5 11.3 115 2-127 1981-2101(2102)
103 cd04047 C2B_Copine C2 domain s 99.3 1.5E-11 3.3E-16 116.4 10.0 86 4-90 3-99 (110)
104 PF00168 C2: C2 domain; Inter 99.3 2.4E-11 5.3E-16 108.1 9.7 81 3-83 1-85 (85)
105 KOG1030 Predicted Ca2+-depende 99.2 3.5E-11 7.5E-16 119.3 7.8 73 537-616 6-78 (168)
106 cd00030 C2 C2 domain. The C2 d 99.1 6.5E-10 1.4E-14 100.6 11.5 100 3-104 1-102 (102)
107 cd04019 C2C_MCTP_PRT_plant C2 99.1 3.5E-10 7.6E-15 113.4 9.0 49 538-586 1-50 (150)
108 smart00239 C2 Protein kinase C 99.0 1.5E-09 3.2E-14 98.9 11.3 90 2-91 1-94 (101)
109 PLN02223 phosphoinositide phos 99.0 2.4E-09 5.2E-14 124.7 15.0 116 2-125 410-536 (537)
110 cd08379 C2D_MCTP_PRT_plant C2 99.0 8.8E-10 1.9E-14 107.1 7.9 71 538-615 1-74 (126)
111 cd04050 C2B_Synaptotagmin-like 99.0 1.4E-09 3E-14 102.3 8.6 71 538-614 1-71 (105)
112 cd08682 C2_Rab11-FIP_classI C2 99.0 1.3E-09 2.8E-14 105.9 8.4 76 539-615 1-76 (126)
113 cd04016 C2_Tollip C2 domain pr 99.0 1.9E-09 4.2E-14 104.0 8.5 69 538-614 3-72 (121)
114 cd08376 C2B_MCTP_PRT C2 domain 99.0 1.9E-09 4.2E-14 102.9 8.4 71 538-614 1-71 (116)
115 KOG1328 Synaptic vesicle prote 98.9 2.3E-10 5E-15 132.2 2.0 120 3-128 116-303 (1103)
116 PLN02952 phosphoinositide phos 98.9 1.1E-08 2.3E-13 121.7 15.3 116 2-125 471-598 (599)
117 cd04022 C2A_MCTP_PRT_plant C2 98.9 2.7E-09 5.9E-14 103.8 7.9 72 539-613 2-73 (127)
118 PLN02270 phospholipase D alpha 98.9 1.5E-08 3.2E-13 122.6 15.1 125 2-131 9-153 (808)
119 cd08374 C2F_Ferlin C2 domain s 98.9 9.9E-09 2.2E-13 100.3 10.7 89 3-91 2-123 (133)
120 cd08395 C2C_Munc13 C2 domain t 98.9 5.7E-09 1.2E-13 100.6 8.7 71 539-613 2-79 (120)
121 cd08381 C2B_PI3K_class_II C2 d 98.9 6.3E-09 1.4E-13 100.7 8.3 79 531-614 7-91 (122)
122 PLN02230 phosphoinositide phos 98.9 2.1E-08 4.5E-13 119.1 14.1 116 2-125 470-597 (598)
123 cd08375 C2_Intersectin C2 doma 98.8 1.1E-08 2.5E-13 100.8 9.4 73 537-615 15-87 (136)
124 cd04039 C2_PSD C2 domain prese 98.8 1.3E-08 2.8E-13 96.4 9.3 74 538-616 2-79 (108)
125 cd04046 C2_Calpain C2 domain p 98.8 1.2E-08 2.6E-13 99.2 8.9 69 537-612 3-71 (126)
126 cd04017 C2D_Ferlin C2 domain f 98.8 1.5E-08 3.2E-13 99.9 9.5 79 537-615 1-82 (135)
127 cd04042 C2A_MCTP_PRT C2 domain 98.8 1.7E-08 3.8E-13 97.2 9.6 69 539-614 2-71 (121)
128 PLN02222 phosphoinositide phos 98.8 5.7E-08 1.2E-12 115.3 15.1 116 2-125 453-580 (581)
129 cd04038 C2_ArfGAP C2 domain pr 98.8 2E-08 4.3E-13 100.1 9.4 70 538-615 3-72 (145)
130 cd08688 C2_KIAA0528-like C2 do 98.8 1.5E-08 3.2E-13 96.1 8.0 73 539-615 1-75 (110)
131 cd04011 C2B_Ferlin C2 domain s 98.8 2E-08 4.3E-13 95.4 8.7 73 536-614 3-75 (111)
132 COG5038 Ca2+-dependent lipid-b 98.8 1.6E-08 3.6E-13 123.8 10.1 120 3-128 1042-1163(1227)
133 PLN02228 Phosphoinositide phos 98.8 6.6E-08 1.4E-12 114.5 14.9 119 1-127 431-562 (567)
134 cd04025 C2B_RasA1_RasA4 C2 dom 98.8 2.2E-08 4.9E-13 96.7 8.9 70 539-614 2-71 (123)
135 cd04018 C2C_Ferlin C2 domain t 98.8 1.9E-08 4.1E-13 100.9 8.6 73 538-615 1-87 (151)
136 cd04041 C2A_fungal C2 domain f 98.8 2.5E-08 5.5E-13 94.7 8.8 74 538-614 2-79 (111)
137 KOG0169 Phosphoinositide-speci 98.8 3.8E-08 8.2E-13 116.8 11.8 117 2-126 617-744 (746)
138 cd08677 C2A_Synaptotagmin-13 C 98.8 1.4E-08 3.1E-13 97.0 6.7 72 536-614 13-88 (118)
139 cd04054 C2A_Rasal1_RasA4 C2 do 98.8 3E-08 6.4E-13 95.8 9.0 70 539-615 2-72 (121)
140 cd08681 C2_fungal_Inn1p-like C 98.7 2.7E-08 5.7E-13 95.4 8.4 72 538-615 2-74 (118)
141 cd04024 C2A_Synaptotagmin-like 98.7 3.9E-08 8.4E-13 95.4 9.5 72 538-615 2-75 (128)
142 cd04032 C2_Perforin C2 domain 98.7 2.7E-08 5.9E-13 96.9 8.1 73 537-616 28-101 (127)
143 cd08401 C2A_RasA2_RasA3 C2 dom 98.7 3E-08 6.5E-13 95.8 8.2 68 539-613 2-71 (121)
144 KOG1028 Ca2+-dependent phospho 98.7 4.2E-08 9.2E-13 114.1 10.3 87 2-88 299-393 (421)
145 cd04043 C2_Munc13_fungal C2 do 98.7 4.9E-08 1.1E-12 94.6 8.9 55 537-591 1-58 (126)
146 cd04036 C2_cPLA2 C2 domain pre 98.7 3.1E-08 6.7E-13 95.2 7.4 71 538-614 1-74 (119)
147 cd04031 C2A_RIM1alpha C2 domai 98.7 3.6E-08 7.7E-13 95.4 7.8 75 537-614 16-95 (125)
148 cd08406 C2B_Synaptotagmin-12 C 98.7 1.9E-08 4.1E-13 99.3 5.9 74 537-614 15-93 (136)
149 cd04014 C2_PKC_epsilon C2 doma 98.7 5.4E-08 1.2E-12 95.4 9.0 69 538-614 5-84 (132)
150 cd08685 C2_RGS-like C2 domain 98.7 4.7E-08 1E-12 94.2 8.4 74 534-613 9-87 (119)
151 cd08388 C2A_Synaptotagmin-4-11 98.7 5.8E-08 1.3E-12 94.8 8.6 77 534-613 13-93 (128)
152 cd04010 C2B_RasA3 C2 domain se 98.7 4.3E-08 9.2E-13 98.1 7.6 53 539-593 2-59 (148)
153 cd04015 C2_plant_PLD C2 domain 98.7 7E-08 1.5E-12 97.7 8.9 53 538-590 8-91 (158)
154 cd04028 C2B_RIM1alpha C2 domai 98.7 6.9E-08 1.5E-12 96.2 8.6 69 537-612 29-103 (146)
155 cd04037 C2E_Ferlin C2 domain f 98.7 7.9E-08 1.7E-12 93.3 8.8 72 538-615 1-74 (124)
156 cd08391 C2A_C2C_Synaptotagmin_ 98.7 8.2E-08 1.8E-12 92.1 8.7 71 538-614 2-78 (121)
157 cd08392 C2A_SLP-3 C2 domain fi 98.6 7.3E-08 1.6E-12 94.1 8.3 76 535-614 13-94 (128)
158 cd04029 C2A_SLP-4_5 C2 domain 98.6 9.9E-08 2.1E-12 92.8 8.7 76 535-614 13-94 (125)
159 cd08382 C2_Smurf-like C2 domai 98.6 8.9E-08 1.9E-12 92.8 8.3 68 539-614 2-70 (123)
160 cd08676 C2A_Munc13-like C2 dom 98.6 8.7E-08 1.9E-12 96.3 8.4 74 535-614 26-128 (153)
161 cd08393 C2A_SLP-1_2 C2 domain 98.6 6.7E-08 1.4E-12 93.9 7.3 75 536-614 14-94 (125)
162 KOG1264 Phospholipase C [Lipid 98.6 1.6E-07 3.4E-12 110.3 11.5 119 1-128 1065-1191(1267)
163 cd04033 C2_NEDD4_NEDD4L C2 dom 98.6 9.8E-08 2.1E-12 93.5 8.3 71 538-615 1-78 (133)
164 cd08384 C2B_Rabphilin_Doc2 C2 98.6 1.1E-07 2.5E-12 93.1 8.6 77 535-615 11-92 (133)
165 cd08407 C2B_Synaptotagmin-13 C 98.6 6.3E-08 1.4E-12 95.7 6.7 75 537-615 15-96 (138)
166 cd08385 C2A_Synaptotagmin-1-5- 98.6 1.2E-07 2.5E-12 91.8 8.5 76 535-614 14-92 (124)
167 cd04027 C2B_Munc13 C2 domain s 98.6 5.8E-08 1.3E-12 94.6 6.4 70 538-614 2-71 (127)
168 cd08387 C2A_Synaptotagmin-8 C2 98.6 1.2E-07 2.5E-12 91.8 8.5 77 534-614 13-92 (124)
169 cd08689 C2_fungal_Pkc1p C2 dom 98.6 1.6E-07 3.4E-12 86.9 8.5 84 3-91 1-88 (109)
170 cd04009 C2B_Munc13-like C2 dom 98.6 1.7E-07 3.7E-12 92.1 8.7 76 537-614 16-98 (133)
171 cd08377 C2C_MCTP_PRT C2 domain 98.6 2.1E-07 4.6E-12 89.1 9.1 71 538-615 2-72 (119)
172 cd04030 C2C_KIAA1228 C2 domain 98.6 1.5E-07 3.2E-12 91.4 8.0 77 533-613 12-93 (127)
173 cd04049 C2_putative_Elicitor-r 98.6 2.5E-07 5.4E-12 89.5 9.3 74 538-614 2-76 (124)
174 cd08386 C2A_Synaptotagmin-7 C2 98.6 2.2E-07 4.7E-12 90.0 8.9 76 535-614 14-93 (125)
175 cd08378 C2B_MCTP_PRT_plant C2 98.6 1.2E-07 2.7E-12 91.6 7.1 66 539-614 2-67 (121)
176 cd08680 C2_Kibra C2 domain fou 98.5 1.4E-07 3E-12 91.6 6.9 75 536-614 13-93 (124)
177 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.5 2.2E-07 4.7E-12 94.6 8.3 75 537-614 27-106 (162)
178 cd08410 C2B_Synaptotagmin-17 C 98.5 2E-07 4.4E-12 91.8 7.8 75 537-615 14-93 (135)
179 KOG1031 Predicted Ca2+-depende 98.5 1.8E-07 3.9E-12 106.0 8.1 119 2-124 4-134 (1169)
180 cd08402 C2B_Synaptotagmin-1 C2 98.5 2.1E-07 4.5E-12 91.7 7.2 74 537-614 15-93 (136)
181 cd08678 C2_C21orf25-like C2 do 98.5 3.7E-07 8.1E-12 88.7 8.4 69 539-616 1-71 (126)
182 KOG2059 Ras GTPase-activating 98.5 1.8E-07 3.9E-12 109.4 7.1 134 4-146 134-291 (800)
183 KOG1328 Synaptic vesicle prote 98.5 4.2E-08 9E-13 113.9 1.9 89 2-90 948-1048(1103)
184 cd08404 C2B_Synaptotagmin-4 C2 98.5 3.2E-07 6.9E-12 90.4 7.8 75 536-614 14-93 (136)
185 cd08383 C2A_RasGAP C2 domain ( 98.5 4.4E-07 9.5E-12 86.6 8.4 51 539-593 2-53 (117)
186 cd08409 C2B_Synaptotagmin-15 C 98.5 3.3E-07 7.1E-12 90.6 7.4 75 535-614 13-92 (137)
187 cd04045 C2C_Tricalbin-like C2 98.5 6.1E-07 1.3E-11 86.6 9.1 71 538-615 2-73 (120)
188 KOG1013 Synaptic vesicle prote 98.5 3.9E-08 8.5E-13 106.2 0.8 158 2-167 94-263 (362)
189 cd08403 C2B_Synaptotagmin-3-5- 98.5 4.1E-07 8.9E-12 89.4 7.9 76 536-615 13-93 (134)
190 cd08408 C2B_Synaptotagmin-14_1 98.5 2.1E-07 4.5E-12 92.1 5.7 75 536-614 14-94 (138)
191 cd08400 C2_Ras_p21A1 C2 domain 98.4 7.4E-07 1.6E-11 86.8 9.2 49 538-590 5-54 (126)
192 cd08405 C2B_Synaptotagmin-7 C2 98.4 4.9E-07 1.1E-11 89.0 8.0 75 536-614 14-93 (136)
193 cd04040 C2D_Tricalbin-like C2 98.4 1E-06 2.3E-11 83.8 8.5 70 539-614 1-71 (115)
194 cd04044 C2A_Tricalbin-like C2 98.4 1.1E-06 2.3E-11 84.8 8.6 71 538-615 3-76 (124)
195 cd08389 C2A_Synaptotagmin-14_1 98.4 8E-07 1.7E-11 86.3 7.6 76 535-615 14-93 (124)
196 cd04035 C2A_Rabphilin_Doc2 C2 98.4 1.3E-06 2.8E-11 84.4 8.7 79 532-613 10-93 (123)
197 cd04021 C2_E3_ubiquitin_ligase 98.4 1.3E-06 2.7E-11 85.0 8.6 69 538-615 3-72 (125)
198 cd08521 C2A_SLP C2 domain firs 98.3 1.4E-06 3E-11 84.0 8.5 75 536-614 13-93 (123)
199 cd08390 C2A_Synaptotagmin-15-1 98.3 9E-07 2E-11 85.4 7.1 75 535-613 12-90 (123)
200 cd08675 C2B_RasGAP C2 domain s 98.3 1E-06 2.2E-11 87.2 7.2 55 539-594 1-59 (137)
201 cd08686 C2_ABR C2 domain in th 98.3 6.2E-07 1.4E-11 85.6 5.3 48 539-591 1-53 (118)
202 cd04051 C2_SRC2_like C2 domain 98.3 1.2E-06 2.5E-11 84.9 7.3 76 538-615 1-78 (125)
203 cd04026 C2_PKC_alpha_gamma C2 98.3 1.2E-06 2.6E-11 85.6 7.0 63 529-591 5-72 (131)
204 cd08692 C2B_Tac2-N C2 domain s 98.3 9.7E-07 2.1E-11 86.5 5.6 58 537-594 14-77 (135)
205 cd08394 C2A_Munc13 C2 domain f 98.3 3E-06 6.5E-11 82.0 8.7 66 538-614 3-68 (127)
206 cd08691 C2_NEDL1-like C2 domai 98.3 1.2E-06 2.7E-11 86.5 6.1 66 538-612 2-81 (137)
207 PF00168 C2: C2 domain; Inter 98.2 2.8E-06 6E-11 75.4 7.2 72 539-616 1-75 (85)
208 cd08373 C2A_Ferlin C2 domain f 98.2 2.9E-06 6.3E-11 82.5 7.8 66 543-614 2-67 (127)
209 PLN02352 phospholipase D epsil 98.2 9.4E-06 2E-10 98.6 13.5 118 2-131 11-135 (758)
210 cd04047 C2B_Copine C2 domain s 98.2 2.7E-06 5.9E-11 80.4 7.2 73 541-616 4-82 (110)
211 cd04048 C2A_Copine C2 domain f 98.2 2.5E-06 5.3E-11 82.2 6.6 68 542-615 5-79 (120)
212 cd08690 C2_Freud-1 C2 domain f 98.2 3.6E-06 7.7E-11 84.7 7.8 56 539-594 6-66 (155)
213 cd00276 C2B_Synaptotagmin C2 d 98.2 3.8E-06 8.2E-11 82.1 7.3 76 535-614 12-92 (134)
214 PLN03200 cellulose synthase-in 98.2 1.9E-06 4.1E-11 113.9 6.2 71 537-614 1980-2051(2102)
215 cd00275 C2_PLC_like C2 domain 98.2 7E-06 1.5E-10 79.5 8.7 57 537-593 2-67 (128)
216 cd04013 C2_SynGAP_like C2 doma 98.1 7.8E-06 1.7E-10 81.5 8.7 50 536-590 10-60 (146)
217 KOG4347 GTPase-activating prot 98.0 3.5E-06 7.7E-11 98.5 4.2 104 641-767 7-113 (671)
218 KOG1326 Membrane-associated pr 97.9 6.3E-06 1.4E-10 99.9 3.2 87 2-88 614-703 (1105)
219 PLN03008 Phospholipase D delta 97.9 2.3E-05 5E-10 95.5 7.7 55 556-610 75-174 (868)
220 KOG1011 Neurotransmitter relea 97.9 1.2E-05 2.7E-10 92.5 4.8 80 539-625 297-376 (1283)
221 cd04052 C2B_Tricalbin-like C2 97.7 6.8E-05 1.5E-09 71.2 6.7 56 554-615 9-65 (111)
222 KOG0905 Phosphoinositide 3-kin 97.7 4E-05 8.7E-10 94.0 4.9 102 2-106 1525-1635(1639)
223 KOG1013 Synaptic vesicle prote 97.5 0.00013 2.8E-09 79.6 5.3 87 2-88 234-328 (362)
224 smart00239 C2 Protein kinase C 97.4 0.00051 1.1E-08 62.1 8.3 72 538-615 1-75 (101)
225 cd00030 C2 C2 domain. The C2 d 97.4 0.00062 1.3E-08 61.0 8.1 71 539-615 1-72 (102)
226 cd08683 C2_C2cd3 C2 domain fou 97.3 0.00041 8.8E-09 66.5 5.5 100 3-104 1-143 (143)
227 KOG1326 Membrane-associated pr 97.1 0.0001 2.2E-09 89.8 -0.2 117 3-128 208-334 (1105)
228 cd08689 C2_fungal_Pkc1p C2 dom 97.0 0.0013 2.8E-08 61.3 5.5 52 539-595 1-56 (109)
229 cd08374 C2F_Ferlin C2 domain s 96.9 0.0023 5E-08 62.8 7.1 56 539-594 2-66 (133)
230 PLN02964 phosphatidylserine de 96.8 0.0017 3.6E-08 79.0 6.0 83 3-92 56-140 (644)
231 KOG2060 Rab3 effector RIM1 and 96.8 0.00093 2E-08 74.3 3.4 106 2-109 270-382 (405)
232 KOG1327 Copine [Signal transdu 96.4 0.0056 1.2E-07 71.8 6.8 84 7-91 142-236 (529)
233 PF14470 bPH_3: Bacterial PH d 96.1 0.058 1.3E-06 49.4 10.7 90 653-765 1-92 (96)
234 cd08684 C2A_Tac2-N C2 domain f 95.8 0.011 2.4E-07 53.0 4.2 85 4-91 2-94 (103)
235 PLN02270 phospholipase D alpha 95.8 0.021 4.6E-07 70.4 8.1 73 538-610 9-145 (808)
236 PF12416 DUF3668: Cep120 prote 95.8 0.12 2.6E-06 58.6 13.3 123 3-130 2-136 (340)
237 KOG3837 Uncharacterized conser 95.6 0.011 2.4E-07 66.4 4.3 119 3-128 369-505 (523)
238 KOG1031 Predicted Ca2+-depende 95.4 0.02 4.3E-07 66.3 5.4 72 538-612 4-76 (1169)
239 KOG1265 Phospholipase C [Lipid 95.4 0.033 7.2E-07 67.7 7.2 117 2-134 704-831 (1189)
240 PLN02223 phosphoinositide phos 95.2 0.06 1.3E-06 64.0 8.5 58 537-594 409-476 (537)
241 PF10698 DUF2505: Protein of u 94.5 2.1 4.6E-05 43.4 17.0 147 257-418 4-158 (159)
242 PF15627 CEP76-C2: CEP76 C2 do 94.4 0.59 1.3E-05 47.1 12.2 125 3-129 11-153 (156)
243 PLN02964 phosphatidylserine de 93.8 0.27 5.8E-06 60.3 10.0 76 510-592 17-103 (644)
244 PF10698 DUF2505: Protein of u 93.4 2.9 6.3E-05 42.4 15.3 146 811-966 4-157 (159)
245 PLN02952 phosphoinositide phos 93.0 0.29 6.3E-06 59.4 8.6 56 538-593 471-537 (599)
246 cd08693 C2_PI3K_class_I_beta_d 93.0 0.54 1.2E-05 48.5 9.3 69 2-72 9-87 (173)
247 PLN02230 phosphoinositide phos 92.7 0.32 7E-06 59.0 8.4 56 537-592 469-535 (598)
248 PF11605 Vps36_ESCRT-II: Vacuo 92.6 0.54 1.2E-05 43.0 7.7 70 656-727 14-88 (89)
249 PF14844 PH_BEACH: PH domain a 92.5 0.12 2.5E-06 48.7 3.5 53 659-711 2-70 (106)
250 cd08398 C2_PI3K_class_I_alpha 92.3 0.79 1.7E-05 46.6 9.4 84 2-89 9-106 (158)
251 cd08380 C2_PI3K_like C2 domain 91.0 1.2 2.6E-05 44.9 9.2 87 2-89 9-107 (156)
252 PLN02222 phosphoinositide phos 90.9 0.75 1.6E-05 55.8 8.8 57 538-594 453-520 (581)
253 PLN02228 Phosphoinositide phos 90.4 0.77 1.7E-05 55.5 8.1 55 538-592 432-498 (567)
254 PF10358 NT-C2: N-terminal C2 90.0 8.9 0.00019 37.7 14.2 117 2-128 8-137 (143)
255 cd08397 C2_PI3K_class_III C2 d 88.1 1.9 4.1E-05 43.9 7.9 70 20-89 28-107 (159)
256 cd04012 C2A_PI3K_class_II C2 d 87.8 2.2 4.7E-05 43.9 8.3 88 2-89 9-119 (171)
257 KOG1264 Phospholipase C [Lipid 86.1 1.2 2.5E-05 54.5 5.8 55 537-592 1065-1126(1267)
258 KOG0169 Phosphoinositide-speci 86.1 1.9 4.1E-05 52.9 7.7 57 538-594 617-683 (746)
259 KOG1452 Predicted Rho GTPase-a 85.5 1.4 2.9E-05 48.5 5.5 75 3-78 53-130 (442)
260 cd08687 C2_PKN-like C2 domain 82.7 12 0.00027 34.3 9.4 85 20-125 7-92 (98)
261 KOG0905 Phosphoinositide 3-kin 81.0 1.4 3E-05 56.0 3.7 77 531-611 1518-1600(1639)
262 cd05018 CoxG Carbon monoxide d 80.1 44 0.00095 32.1 13.6 137 812-968 7-143 (144)
263 cd08399 C2_PI3K_class_I_gamma 79.3 11 0.00023 39.2 9.0 69 2-71 11-88 (178)
264 cd05018 CoxG Carbon monoxide d 77.5 57 0.0012 31.3 13.5 60 352-419 84-143 (144)
265 PF00792 PI3K_C2: Phosphoinosi 76.9 13 0.00028 36.9 8.7 55 35-89 22-85 (142)
266 PF11696 DUF3292: Protein of u 75.8 13 0.00028 45.5 9.7 97 662-767 520-634 (642)
267 PF15625 CC2D2AN-C2: CC2D2A N- 75.6 59 0.0013 33.3 13.3 84 22-106 37-124 (168)
268 smart00142 PI3K_C2 Phosphoinos 74.8 15 0.00033 34.2 8.1 69 3-71 13-91 (100)
269 cd01201 Neurobeachin Neurobeac 71.8 21 0.00045 33.9 8.0 90 657-767 1-105 (108)
270 cd08695 C2_Dock-B C2 domains f 71.4 35 0.00077 35.7 10.5 53 34-86 54-111 (189)
271 cd08868 START_STARD1_3_like Ch 69.1 70 0.0015 33.7 12.6 145 257-416 53-206 (208)
272 KOG2060 Rab3 effector RIM1 and 66.9 7.8 0.00017 44.1 4.8 45 538-583 270-321 (405)
273 KOG1327 Copine [Signal transdu 66.8 7.9 0.00017 46.3 5.1 79 13-91 2-104 (529)
274 PLN02352 phospholipase D epsil 66.3 15 0.00033 46.0 7.6 45 538-585 11-61 (758)
275 cd08876 START_1 Uncharacterize 64.7 1.4E+02 0.003 30.8 13.6 142 254-412 43-191 (195)
276 cd08870 START_STARD2_7-like Li 64.1 1.2E+02 0.0027 31.9 13.2 150 256-418 54-209 (209)
277 PF14429 DOCK-C2: C2 domain in 63.6 19 0.00041 37.4 6.8 55 34-88 60-120 (184)
278 cd08694 C2_Dock-A C2 domains f 62.0 46 0.001 35.0 9.1 38 34-71 54-94 (196)
279 cd07821 PYR_PYL_RCAR_like Pyra 61.6 1.3E+02 0.0029 28.3 12.1 27 254-281 3-29 (140)
280 cd08869 START_RhoGAP C-termina 61.3 57 0.0012 34.2 10.0 137 256-410 48-196 (197)
281 cd08903 START_STARD5-like Lipi 60.2 2E+02 0.0042 30.5 13.9 150 256-416 50-206 (208)
282 cd07821 PYR_PYL_RCAR_like Pyra 59.9 1.2E+02 0.0026 28.6 11.4 104 811-936 6-112 (140)
283 PF08567 TFIIH_BTF_p62_N: TFII 59.3 31 0.00067 30.9 6.4 46 664-712 6-53 (79)
284 PF06115 DUF956: Domain of unk 59.3 35 0.00077 32.8 7.0 42 668-710 18-59 (118)
285 cd07823 SRPBCC_5 Ligand-bindin 58.8 1.6E+02 0.0035 28.7 12.3 64 898-968 79-144 (146)
286 cd08876 START_1 Uncharacterize 55.4 1.6E+02 0.0034 30.4 12.1 143 811-967 46-193 (195)
287 cd08868 START_STARD1_3_like Ch 54.2 1E+02 0.0022 32.5 10.6 58 888-945 125-189 (208)
288 cd08679 C2_DOCK180_related C2 52.6 79 0.0017 32.6 9.1 52 37-88 56-115 (178)
289 COG4687 Uncharacterized protei 47.6 24 0.00053 33.3 3.8 64 670-753 20-83 (122)
290 smart00234 START in StAR and p 46.4 3.5E+02 0.0077 27.9 14.0 78 334-417 120-202 (206)
291 KOG4471 Phosphatidylinositol 3 46.2 80 0.0017 38.3 8.6 70 644-715 27-97 (717)
292 smart00683 DM16 Repeats in sea 45.9 31 0.00067 28.7 3.8 33 675-708 21-53 (55)
293 KOG1329 Phospholipase D1 [Lipi 45.0 31 0.00067 43.6 5.4 103 22-128 138-242 (887)
294 PF04707 PRELI: PRELI-like fam 44.3 1.7E+02 0.0037 29.6 9.8 65 895-959 77-142 (157)
295 cd08904 START_STARD6-like Lipi 44.2 2.5E+02 0.0054 29.8 11.4 74 886-960 121-199 (204)
296 cd08871 START_STARD10-like Lip 43.8 3.4E+02 0.0073 28.8 12.6 78 336-419 122-204 (222)
297 cd08906 START_STARD3-like Chol 43.7 3.7E+02 0.0079 28.5 12.7 129 811-950 54-192 (209)
298 PRK10724 hypothetical protein; 42.7 1.5E+02 0.0033 30.0 9.2 110 811-942 20-129 (158)
299 cd00177 START Lipid-binding ST 41.7 2.1E+02 0.0045 28.9 10.3 51 887-939 114-168 (193)
300 PF00407 Bet_v_1: Pathogenesis 41.5 92 0.002 31.3 7.4 137 812-969 10-149 (151)
301 cd07816 Bet_v1-like Ligand-bin 41.3 3.7E+02 0.0079 26.6 11.9 117 254-388 3-119 (148)
302 cd08870 START_STARD2_7-like Li 40.9 4.5E+02 0.0098 27.6 13.0 147 812-965 56-207 (209)
303 cd08905 START_STARD1-like Chol 38.3 3.4E+02 0.0075 28.7 11.5 53 886-938 125-181 (209)
304 cd07823 SRPBCC_5 Ligand-bindin 37.5 3.2E+02 0.007 26.6 10.6 67 342-418 75-143 (146)
305 PF01852 START: START domain; 37.5 2.9E+02 0.0063 28.5 10.8 82 333-420 119-205 (206)
306 PF06219 DUF1005: Protein of u 36.7 1.8E+02 0.0039 34.1 9.2 106 22-128 36-169 (460)
307 PTZ00447 apical membrane antig 36.6 3.2E+02 0.007 31.1 10.9 99 21-126 73-173 (508)
308 cd08696 C2_Dock-C C2 domains f 36.5 96 0.0021 32.3 6.7 38 34-71 55-95 (179)
309 cd08905 START_STARD1-like Chol 35.0 4.9E+02 0.011 27.5 12.1 148 256-416 53-207 (209)
310 cd08697 C2_Dock-D C2 domains f 34.9 1.2E+02 0.0025 31.8 7.0 39 33-71 56-97 (185)
311 KOG0694 Serine/threonine prote 33.7 14 0.0003 45.3 0.0 96 21-128 27-123 (694)
312 cd08877 START_2 Uncharacterize 32.5 5.7E+02 0.012 26.9 12.2 130 811-950 51-201 (215)
313 cd07826 SRPBCC_CalC_Aha1-like_ 29.7 5.3E+02 0.012 25.0 11.2 139 254-416 2-141 (142)
314 PF07234 DUF1426: Protein of u 28.8 25 0.00054 32.4 0.8 36 447-482 9-44 (117)
315 cd00177 START Lipid-binding ST 28.2 6.2E+02 0.013 25.3 13.5 51 334-389 113-167 (193)
316 cd08907 START_STARD8-like C-te 28.1 2.9E+02 0.0063 29.4 8.6 103 284-392 73-183 (205)
317 PF04283 CheF-arch: Chemotaxis 27.8 57 0.0012 35.1 3.4 35 672-710 25-59 (221)
318 cd07817 SRPBCC_8 Ligand-bindin 26.5 5.4E+02 0.012 24.1 11.0 25 812-836 6-30 (139)
319 cd08906 START_STARD3-like Chol 26.2 8E+02 0.017 26.0 12.2 147 256-416 53-207 (209)
320 PF07289 DUF1448: Protein of u 25.7 2.8E+02 0.0061 31.7 8.4 103 652-775 150-258 (339)
321 PF07162 B9-C2: Ciliary basal 25.4 6.5E+02 0.014 25.6 10.6 78 3-86 4-101 (168)
322 PF11618 DUF3250: Protein of u 24.7 3E+02 0.0066 26.1 7.3 95 25-126 2-105 (107)
323 PF00407 Bet_v_1: Pathogenesis 24.4 6.1E+02 0.013 25.4 10.0 114 256-388 8-122 (151)
324 PF10409 PTEN_C2: C2 domain of 24.2 6.5E+02 0.014 24.2 10.6 89 2-90 5-98 (134)
325 cd08871 START_STARD10-like Lip 24.1 8.7E+02 0.019 25.7 12.7 49 888-938 122-175 (222)
326 cd08865 SRPBCC_10 Ligand-bindi 24.1 5.9E+02 0.013 23.7 10.8 26 907-935 83-108 (140)
327 KOG1265 Phospholipase C [Lipid 23.5 78 0.0017 40.0 3.8 71 515-590 679-761 (1189)
328 cd08904 START_STARD6-like Lipi 22.3 9.5E+02 0.021 25.4 12.7 149 250-414 43-202 (204)
329 PF05391 Lsm_interact: Lsm int 22.2 33 0.00071 22.8 0.2 11 641-651 9-19 (21)
330 PF12068 DUF3548: Domain of un 22.2 80 0.0017 33.8 3.2 36 694-732 111-146 (213)
331 cd08907 START_STARD8-like C-te 22.1 9.8E+02 0.021 25.5 11.2 54 884-939 123-179 (205)
332 PF05106 Phage_holin_3: Phage 21.0 1.3E+02 0.0027 28.3 3.9 40 480-521 61-100 (100)
333 cd07813 COQ10p_like Coenzyme Q 21.0 6.5E+02 0.014 23.9 9.3 28 908-937 82-109 (138)
334 cd08910 START_STARD2-like Lipi 20.0 1E+03 0.022 25.0 12.2 144 256-418 53-207 (207)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=1e-35 Score=350.84 Aligned_cols=528 Identities=31% Similarity=0.397 Sum_probs=451.5
Q ss_pred CccchhhhhhcccchhhhHHHHHHHHHHHhhhhccCCCcccccccCCCCCcchhhheeeeEEEEEehhhhHHHHHHHHHH
Q 002081 442 PQSDWKLAVHYFANFTVVSSFFMGIYVLIHIWLATSTTIQGLEFVGLDLPDSIGEFIVCGVLVLQGERFLQLISRFMQAR 521 (971)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (971)
+..+|+....+|....++.....-+++-+|+-.+.+...+|.+|.|+++||..|++.-..+++.+.+|......+|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k 81 (590)
T KOG1032|consen 2 PHMQQKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAK 81 (590)
T ss_pred CcccccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCccccccccccccccccccccc
Confidence 34568888899999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceeeecCceEEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCc----------------
Q 002081 522 KQKGSDHGVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWN---------------- 585 (971)
Q Consensus 522 ~~~g~d~~~~~~~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn---------------- 585 (971)
...|.+++++..+++|...+..+.|.+++..+.++.+|||++++|.+..+.+++..|..+|.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~ 161 (590)
T KOG1032|consen 82 LHKGGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKV 161 (590)
T ss_pred cCCCCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCcccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------------ccceEEEEcCcccccccccceeEEEEecCCCCccchhhhhhHhhhhcccc--
Q 002081 586 ----------------------------DLADVWIPLQGKLAQACQSKLHLRIFLNNTKGSNVVKEYLTKMEKEVGKK-- 635 (971)
Q Consensus 586 ----------------------------~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~~~~~~vr~~l~k~~~~~~~~-- 635 (971)
...++|..|.++.++.++.+++++.+.+++..+.....++..++++++.+
T Consensus 162 vIpf~eI~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~ 241 (590)
T KOG1032|consen 162 VIPFDEITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQ 241 (590)
T ss_pred EEeeeeeeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccc
Confidence 47789999999999999999999999999988888899999999999888
Q ss_pred ccccCcccchhhhcccCCCCCCeeEEEEEeeEeeecccCeeEEeecceeEEeeccCCceeEEEEeccccccccccCCccc
Q 002081 636 INLRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLS 715 (971)
Q Consensus 636 ~~~~s~~~~~~f~~lF~lp~~E~Li~~f~Cal~~~~~~~GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~k~~~~~~ 715 (971)
-...+++.+.+|+..|++|.+|.++++|+|++.+.++++|+++++....|||+++||..+++...|+|++.++..+....
T Consensus 242 ~~~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~ 321 (590)
T KOG1032|consen 242 GNVDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWK 321 (590)
T ss_pred cccccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeecccccccccccccccc
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999987776
Q ss_pred cCCCCeEEEEEeecCCcCcCCCceeeccCCceEEEEeeccCh-hHHHHHHHHHHHhCCCChhhhhhcccccc---cccCc
Q 002081 716 SMGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSY-NVAHRTIMALWKARSLSPEQKVQIVEESE---AKSLQ 791 (971)
Q Consensus 716 ~~g~~~~~i~l~~~~~l~~~~~~~~~~~~~~~k~~F~sf~~r-d~~~~~i~~~w~~~~ls~e~~~~~~~~~e---~~~~~ 791 (971)
..+.+....++..+.++.+..+.+.+...+++.+.|.++... +..-.+++..|............++.... ..-..
T Consensus 322 ~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v 401 (590)
T KOG1032|consen 322 GPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKV 401 (590)
T ss_pred CCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecc
Confidence 566666888888999999999999998889999999888773 33334444444332222222222222110 00001
Q ss_pred cCCCCCcCCCCCccccccccccccCChhheeeecCCChhHHHHHHHcCcccceeccccccCCCceeEEEEEEE--eeccc
Q 002081 792 SEEGGTFLGLEDVTMSEVYSSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRF--DKCIS 869 (971)
Q Consensus 792 ~eesg~~~g~~d~~~~~v~~~~~pisv~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~~sY~~--~~~l~ 869 (971)
..+..-....-+..++++.....++.++.+..+|.+.+-.+..+++.++..+..++|+...+++.+|+.+|+- +.+++
T Consensus 402 ~~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~ 481 (590)
T KOG1032|consen 402 STSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPIS 481 (590)
T ss_pred eeEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcccccccccCCCccccCCCceeeeeccccccccccc
Confidence 1110001112345577777767888888888889888777888888888899889999889999999999996 66788
Q ss_pred CCccccCceEEEEecCCCCcEEEEEEEeeCCCCCCCceEEEEEEE-EEeCCCCCCccEEEEEEEEEEeecccchhhhhhh
Q 002081 870 RYRGEVTSTQQKSPLPNGNGWLVEEVMTLHGVPLGDYFNLHLRYQ-VEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKN 948 (971)
Q Consensus 870 p~g~~vt~~Qqk~~~~~~~~~vve~~~~~~dVPyGD~F~V~~R~~-i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~ 948 (971)
+....++..|++........|++++++.+||||||++|.||.||. +......+..+++.++..|.|++...++.+..+.
T Consensus 482 ~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k~ 561 (590)
T KOG1032|consen 482 PDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYREALDETSKVKTTLVWVSFRIEWLKDIKMEARKIKQ 561 (590)
T ss_pred cccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 899999999999999888899999999999999999999999993 4444444578888888999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHhhhh
Q 002081 949 IVSNLEDRLRVKLSVIEKEFA 969 (971)
Q Consensus 949 ~~~~~~~~~k~l~~~~~kei~ 969 (971)
++.+.++.++.++.+++++-.
T Consensus 562 ~~r~~~~~l~~~~~~l~~~~~ 582 (590)
T KOG1032|consen 562 ILRNDQDLLEVLFSLLEKLSQ 582 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988653
No 2
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=5.8e-33 Score=327.62 Aligned_cols=289 Identities=23% Similarity=0.326 Sum_probs=212.4
Q ss_pred CCCCCeeEEEEEeeEeeecccCeeEEeecceeEEeeccCCceeEEEEeccccccccccCCccccCCCCeEEEEEeecCCc
Q 002081 653 LPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGM 732 (971)
Q Consensus 653 lp~~E~Li~~f~Cal~~~~~~~GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~~~l 732 (971)
+|++|.|+.+|+|||+|+|++|||||++++|||||||+|||.++.+||+.+|+.|+|+.+ +|+
T Consensus 117 ~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~t-----------------ag~ 179 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKT-----------------AGI 179 (590)
T ss_pred CCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhh-----------------ccC
Confidence 999999999999999999999999999999999999999999999999999999999984 345
Q ss_pred CcCCCceeeccCCceEEEEeeccChhHHHHHHHHHHHhCC---CChhhhhhc---cc-ccccc-----cCccCCC--CCc
Q 002081 733 DARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIMALWKARS---LSPEQKVQI---VE-ESEAK-----SLQSEEG--GTF 798 (971)
Q Consensus 733 ~~~~~~~~~~~~~~~k~~F~sf~~rd~~~~~i~~~w~~~~---ls~e~~~~~---~~-~~e~~-----~~~~ees--g~~ 798 (971)
+|+.+.|. + +..+|+|+||.+||.+|.+|..+-+... -++..-... .+ +...+ +...+++ ...
T Consensus 180 fpn~i~i~--t-~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~s 256 (590)
T KOG1032|consen 180 FPNAIEIT--T-GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPSALQNS 256 (590)
T ss_pred CCcceEEe--c-CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCccccccc
Confidence 55444444 2 4569999999999999998755544321 111100000 00 00000 0000000 000
Q ss_pred CCCC-------------CccccccccccccCChhheeee-cCCChhHHHHHHHcCcccceeccccccCCCceeEEEEEEE
Q 002081 799 LGLE-------------DVTMSEVYSSVLPVPMSFFMEL-FGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRF 864 (971)
Q Consensus 799 ~g~~-------------d~~~~~v~~~~~pisv~~~f~l-F~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~~sY~~ 864 (971)
.+.+ ...+.-+....+.+++..||++ |++..+...+.+.+...++...+|.....+...|.++|+.
T Consensus 257 ~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~ 336 (590)
T KOG1032|consen 257 FDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTK 336 (590)
T ss_pred cCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccceeEeccCCc
Confidence 1110 0112223345678899999975 9998899999999999999999998777788999999996
Q ss_pred eecccCCccccC---ceEEEEecCCCCcEEEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccc
Q 002081 865 DKCISRYRGEVT---STQQKSPLPNGNGWLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRH 941 (971)
Q Consensus 865 ~~~l~p~g~~vt---~~Qqk~~~~~~~~~vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~ 941 (971)
..+. +.|+..| .+|...+.....++.+...+.++|||||++|.|++||+|+|... +.|+++|+++|.|.|++|.
T Consensus 337 ~l~~-~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~--~~~~l~v~~~V~~~~~sw~ 413 (590)
T KOG1032|consen 337 GLPA-KSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGS--NSCKLKVSTSVEWTKSSWD 413 (590)
T ss_pred cCCC-cCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCC--cceeecceeEEEeccCchh
Confidence 4432 3333332 33444444444568899999999999999999999999999876 9999999999999999999
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHhhhh
Q 002081 942 QKRITKNIVSNLEDRLRVKLSVIEKEFA 969 (971)
Q Consensus 942 K~~Iek~~~~~~~~~~k~l~~~~~kei~ 969 (971)
+.+++.++. .++.+++++++++.
T Consensus 414 ~~~~~~~~~-----~~k~lv~~~~~~~~ 436 (590)
T KOG1032|consen 414 VPVSEIGSN-----TLKDLVEILEKLLE 436 (590)
T ss_pred hcccccccc-----chhhHHHHHHHHHh
Confidence 998888875 55666666666653
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=2.9e-19 Score=171.99 Aligned_cols=117 Identities=23% Similarity=0.474 Sum_probs=102.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~-t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (971)
+|+|+|++|++|+..+ .|.+||||++.+++++.+|+++.+ +.||+|||+|.|.+.+....|.|+|||+|.+++|++||
T Consensus 3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred EEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 5899999999988777 789999999999999999999876 79999999999999766678999999999999999999
Q ss_pred EEEEeCcc-ccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 81 FLKIPVSR-VFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 81 ~v~I~l~~-l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
++.+++.. +.. +...+.||+|.++.++ ...|+|+|+++|
T Consensus 82 ~~~i~l~~~~~~---g~~~~~W~~L~~~~~~---~~~g~i~l~l~y 121 (121)
T cd04016 82 WTHITIPESVFN---GETLDDWYSLSGKQGE---DKEGMINLVFSY 121 (121)
T ss_pred EEEEECchhccC---CCCccccEeCcCccCC---CCceEEEEEEeC
Confidence 99999964 433 2346999999976553 457999999987
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=4.7e-19 Score=172.20 Aligned_cols=120 Identities=32% Similarity=0.568 Sum_probs=104.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC------CCCeEEEEEEeCCCCCCC
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED------LKDELVISVLDEDKYFND 76 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~------~~~~L~V~V~D~d~~~~d 76 (971)
|+|+|++|+||++++..|.+||||++.+++.+++|+++.+++||+|||+|.|.+.. ....|.+.|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999999999999999999999999999999999999999999955 357899999999998899
Q ss_pred ceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEE
Q 002081 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (971)
Q Consensus 77 ~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~ 124 (971)
++||++.|++.++.... +.....||+|.++.++ ..+.+|+|+|+++
T Consensus 81 ~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~~-~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPGK-DDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccC-CCcccEEEECcCCCCC-CccccceEEEEeC
Confidence 99999999999986322 3346899999975542 2357899999873
No 5
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=3.6e-18 Score=170.88 Aligned_cols=126 Identities=31% Similarity=0.505 Sum_probs=108.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeCC-CCeEEEEEEeCCCCCCCceeE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~-t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG 80 (971)
|+|+|++|+||++++.+|.+||||++.++++..+|+++.+ +.||+|||.|.|.+.++ ...|.|+|||++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 8999999999999999999999999999999999999977 69999999999999654 468999999999888899999
Q ss_pred EEEEeCcccccc-CCCCCCcEEEEcccCCC----CCCCCcceEEEEEEEEEec
Q 002081 81 FLKIPVSRVFDA-DNKSLPTAWHSLQPKNK----KSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 81 ~v~I~l~~l~~~-~~~~~~~~W~~L~~~~~----k~~~~~~G~I~L~i~~~~~ 128 (971)
++.+|+.++... +.....++||+|.+..+ ++..+.+|+|+|+++|.+.
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 999999998643 22345689999997653 1234678999999999854
No 6
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=3.7e-18 Score=166.12 Aligned_cols=121 Identities=26% Similarity=0.410 Sum_probs=104.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC----CCeEEEEEEeCCCCC-CC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDEDKYF-ND 76 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~----~~~L~V~V~D~d~~~-~d 76 (971)
+|+|+|++|+||++.+..|.+||||++.+++++++|+++.++.||.|||.|.|.+..+ ...|.|+|||.+.+. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 5899999999999999889999999999999999999999999999999999999543 357999999999876 89
Q ss_pred ceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEE
Q 002081 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (971)
Q Consensus 77 ~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~ 126 (971)
++||++.+++.++.. .+....+||+|..+... ...+|+|+|.+.+.
T Consensus 81 ~~lG~v~i~l~~l~~--~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVP--PSEAVVQRYPLEKRGLF--SRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCC--CCCccceEeEeeeCCCC--CCccEEEEEEEEEc
Confidence 999999999999863 23346899999965432 34789999999874
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.76 E-value=9.9e-18 Score=161.67 Aligned_cols=120 Identities=33% Similarity=0.576 Sum_probs=106.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (971)
+|+|+|++|+||+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+.++...|.|+|||++.++++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 5899999999999999999999999999987 578999999999999999999999777789999999999988999999
Q ss_pred EEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 002081 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~ 127 (971)
++.+++.++.. +...+.|++|.+..+ .+..|+|+|.+.|.|
T Consensus 81 ~~~~~l~~l~~---~~~~~~~~~L~~~~~---~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLEL---NKPTEVKLKLEDPNS---DEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCC---CCCeEEEEECCCCCC---ccCceEEEEEEEECC
Confidence 99999999864 234678999986553 256899999999854
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=8.9e-18 Score=162.82 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=100.6
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCC-----
Q 002081 3 LVVRVIEARN---IPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF----- 74 (971)
Q Consensus 3 L~V~Vi~Arn---L~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~----- 74 (971)
|+|+|++|+| |++++..|.+||||++.+++++.+|+++.+++||+|||+|.|.+.++...|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 8999999999 89999999999999999999999999999999999999999999777789999999999863
Q ss_pred -CCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEE
Q 002081 75 -NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (971)
Q Consensus 75 -~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L 121 (971)
+|++||++.+++..+..+ .....||+|.+..++. .+..|+|++
T Consensus 82 ~~dd~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~-~~~~g~l~~ 125 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDD---RVYAHSYPLLSLNPSG-VKKMGELEC 125 (126)
T ss_pred CCCceEEEEEEEHHHccCC---CEEeeEEEeEeCCCCC-ccCCcEEEe
Confidence 899999999999998542 2357999999765443 356788875
No 9
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.5e-17 Score=160.63 Aligned_cols=118 Identities=27% Similarity=0.464 Sum_probs=101.7
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002081 3 LVVRVIEARNIPAMD-QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d-~~g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (971)
|+|+|++|+||++++ .+|.+||||.+.++++ .++|+++++++||.|||+|.|.+.+....|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 789999999999974 4678999999999865 58999999999999999999999766689999999999999999999
Q ss_pred EEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
++.+++.++.. ....+.||+|++.... .+.+|+|+|.++|
T Consensus 82 ~~~i~l~~l~~---~~~~~~w~~L~~~~~~--~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHK---YYGKDTWFPLQPVDAD--SEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccC---CCCcEeeEEEEccCCC--CcccEEEEEEEEC
Confidence 99999999854 2346899999976432 2468999999874
No 10
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=1.6e-17 Score=161.39 Aligned_cols=124 Identities=31% Similarity=0.568 Sum_probs=107.8
Q ss_pred EEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCeEEEEEEeCCCCCCCce
Q 002081 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDF 78 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~--~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~ 78 (971)
.|+|+|++|+||++.+. .+.+||||++.++..+.+|++++++.||.|||+|.|.+.. ....|.|+|||++.++++++
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~ 81 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDY 81 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCc
Confidence 48999999999999988 8899999999999999999999999999999999999965 56899999999999888999
Q ss_pred eEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 79 LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
||++.+++.++...........||+|.++....+....|+|+|++.+
T Consensus 82 lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 82 LGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999998643223346899999977544445689999999864
No 11
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=2.7e-17 Score=158.77 Aligned_cols=116 Identities=34% Similarity=0.586 Sum_probs=100.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCeEEEEEEeCCCCCCCceeEE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVGF 81 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~LG~ 81 (971)
|+|+|++|+||+++ .+||||++.+++.+.+|++++++.||.|||+|.|.+.. ....|.++|||++.. ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 68999999999999999999999999999999999965 467899999999986 7899999
Q ss_pred EEEeCccccccC--CCCCCcEEEEcccCCCCCCCCcceEEEEEEEEE
Q 002081 82 LKIPVSRVFDAD--NKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (971)
Q Consensus 82 v~I~l~~l~~~~--~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~ 126 (971)
+.+++.++.... .+...++||+|.+..+ .+.+|+|+|+++|.
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~---~~~~G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKG---GRVGGELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCC---CccceEEEEEEEec
Confidence 999999986532 2334679999997654 36789999999984
No 12
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=3.5e-17 Score=160.32 Aligned_cols=123 Identities=29% Similarity=0.541 Sum_probs=105.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~-------~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~ 74 (971)
.|+|+|++|+||+.++..|.+||||++.+++. ..+|+++.++.||.|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 38999999999999998899999999999654 47999999999999999999999665678999999999989
Q ss_pred CCceeEEEEEeCccccccCCC---CCCcEEEEcccCCCCCCCCcceEEEEEEEEE
Q 002081 75 NDDFVGFLKIPVSRVFDADNK---SLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~---~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~ 126 (971)
++++||++.+++.++...... .....||+|.++... .+..|+|+|++.|.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~G~l~~~~~~~ 133 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK--SRVKGHLRLYMAYL 133 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC--CcceeEEEEEEeeC
Confidence 999999999999998753322 246799999965433 35789999999883
No 13
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.72 E-value=7.8e-17 Score=154.06 Aligned_cols=113 Identities=34% Similarity=0.621 Sum_probs=101.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCeEEEEEEeCCCCCCCceeEE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGF 81 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG~ 81 (971)
|+|+|++|+||++.+.++.+||||++.+++.+++|+++.++.||.|||+|.|.+.+. ...|.|+|||++.++++++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 789999999999999889999999999999999999999999999999999999554 6899999999999889999999
Q ss_pred EEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEE
Q 002081 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (971)
Q Consensus 82 v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~ 126 (971)
+.+++.++.. ......|++|.+. .|+|++.+.|.
T Consensus 82 ~~~~l~~l~~---~~~~~~w~~L~~~--------~G~~~~~~~~~ 115 (116)
T cd08376 82 CEIDLSALPR---EQTHSLELELEDG--------EGSLLLLLTLT 115 (116)
T ss_pred EEEeHHHCCC---CCceEEEEEccCC--------CcEEEEEEEec
Confidence 9999999854 2346899999842 59999998874
No 14
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=8.2e-17 Score=155.65 Aligned_cols=119 Identities=31% Similarity=0.560 Sum_probs=103.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCeEEEEEEeCCCCCCCceeE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG 80 (971)
+|+|+|++|+||++++.++.+||||++.+++...+|+++.++.||.|||+|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 5899999999999999888999999999999999999999999999999999999554 578999999999988999999
Q ss_pred EEEEeCccccccCCCCCCcEEEEcccCCCC--CCCCcceEEEEEE
Q 002081 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKK--SKNKDCGEILLTI 123 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k--~~~~~~G~I~L~i 123 (971)
++.+++.++... .....||.|.+...+ ...+..|.|++.|
T Consensus 81 ~~~~~l~~l~~~---~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQA---KQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccC---CCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999998542 235789999975433 2346789999876
No 15
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.72 E-value=4.5e-17 Score=156.18 Aligned_cols=115 Identities=32% Similarity=0.550 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeC-CCCeEEEEEEeCCCCCCCcee
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFV 79 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~-t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~L 79 (971)
+|+|+|++|+||+..+..+.+||||++.+++..++|+++.+ +.||.|||.|.|.+.. ....|.|+|||++..+ +++|
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~i 80 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLI 80 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccce
Confidence 69999999999999999999999999999998899998865 7999999999999954 4578999999999865 8999
Q ss_pred EEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 80 G~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
|++.+++.++...+ ....|++|.... +..|+|+|+++|
T Consensus 81 G~~~~~l~~~~~~~---~~~~w~~L~~~~-----~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG---EFDDWYELTLKG-----RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC---CCCCcEEeccCC-----cEeeEEEEEEEC
Confidence 99999999986532 358999998542 468999999976
No 16
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=1e-16 Score=155.82 Aligned_cols=120 Identities=23% Similarity=0.459 Sum_probs=103.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR--QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~--~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (971)
|.|+|++|+||+. ..|.+||||++.++. .+++|+++.++.||.|||.|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 6799999999987 678999999999973 568999999999999999999999655788999999999988999999
Q ss_pred EEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
++.+++.++.... ....|++|.++... .....|+|.+.+.|...
T Consensus 79 ~~~i~l~~l~~~~---~~~~~~~L~~~~~~-~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 79 LAIVPFDELRKNP---SGRQIFPLQGRPYE-GDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEeHHHhccCC---ceeEEEEecCCCCC-CCCcceEEEEEEEEecc
Confidence 9999999986533 35789999976432 24678999999999754
No 17
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=1.6e-16 Score=152.53 Aligned_cols=117 Identities=34% Similarity=0.612 Sum_probs=104.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (971)
+|+|+|++|+||+..+.++.+||||++.+++...+|+++.++.||.|||+|.|.+.+....|.|+|||++.++++++||+
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGK 81 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeE
Confidence 58999999999999999999999999999998899999999999999999999997777899999999998889999999
Q ss_pred EEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 82 v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
+.+++.++.. ....||.|.++... .+..|+|+|.+.+
T Consensus 82 ~~~~l~~~~~-----~~~~~~~l~~~~~~--~~~~G~i~l~~~~ 118 (119)
T cd08377 82 VAIPLLSIKN-----GERKWYALKDKKLR--TRAKGSILLEMDV 118 (119)
T ss_pred EEEEHHHCCC-----CCceEEECcccCCC--CceeeEEEEEEEe
Confidence 9999998843 24689999876433 3478999999876
No 18
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=1.5e-16 Score=156.61 Aligned_cols=122 Identities=24% Similarity=0.474 Sum_probs=102.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC----------CCCeEEEEEEeCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED----------LKDELVISVLDED 71 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~----------~~~~L~V~V~D~d 71 (971)
+|+|+|++|++|++++..|.+||||++.+++.+++|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 699999999999999999999999999999999999999999999999999998522 1257999999999
Q ss_pred CCCCCceeEEEEE-eCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 72 KYFNDDFVGFLKI-PVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 72 ~~~~d~~LG~v~I-~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
..++|++||++.+ |+..+..........+|++|.... ...|+|+|++.+.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~-----~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG-----QSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC-----CchhheeEEeEEEEe
Confidence 9899999999987 554443333345678999997442 468999999999753
No 19
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=1.9e-16 Score=154.05 Aligned_cols=121 Identities=20% Similarity=0.315 Sum_probs=106.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (971)
.|+|+|++|++|+..+..|.+||||++.++++..+|+++.++.||.|||.|.|.+.+....|.|+|||++.+ +|++||+
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~lG~ 82 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFLGQ 82 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCceEE
Confidence 389999999999999999999999999999999999999999999999999999977788999999999986 5899999
Q ss_pred EEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 82 v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
+.+++..+. .....|++|..+..+.+.+..|+|.+++.+.+.
T Consensus 83 ~~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 83 ATLSADPND-----SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred EEEecccCC-----CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 999998752 235789999865555667889999999987643
No 20
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.71 E-value=2e-16 Score=155.90 Aligned_cols=117 Identities=35% Similarity=0.640 Sum_probs=99.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCeEEEEEEeCCCCCCCceeE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG 80 (971)
+|+|+|++|++|++.+..|.+||||++.++...++|+++.++.||.|||+|.|.+.++ ...|.|+|||++.+++|++||
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG 95 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLG 95 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeE
Confidence 5899999999999999999999999999999999999999999999999999999554 478999999999988999999
Q ss_pred EEEEeCccccccCCCCCC--cEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 81 FLKIPVSRVFDADNKSLP--TAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~--~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
++.+++.++......... ..|..|. .+..|+|+|++.+
T Consensus 96 ~~~i~l~~l~~~~~~~~~~~~~~~~~~-------~~~~g~i~l~~~~ 135 (136)
T cd08375 96 RTEIRVADILKETKESKGPITKRLLLH-------EVPTGEVVVKLDL 135 (136)
T ss_pred EEEEEHHHhccccccCCCcEEEEeccc-------cccceeEEEEEEe
Confidence 999999999752222222 3455553 2457999999986
No 21
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=1.7e-16 Score=154.50 Aligned_cols=115 Identities=34% Similarity=0.599 Sum_probs=100.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCC--------
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~-------- 73 (971)
+|+|+|++|++|+..+..|.+||||++.+++..++|+++.++.||.|||+|.|.+..+...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 689999999999999999999999999999889999999999999999999999966677899999999852
Q ss_pred ---CCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEE
Q 002081 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (971)
Q Consensus 74 ---~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i 123 (971)
..+++||++.+++.++. ...+.||.|.++..+ ...+|+|+|++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~-----~~~~~w~~L~~~~~~--~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLS-----GEMDVWYNLEKRTDK--SAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHcc-----CCCCeEEECccCCCC--CcEeEEEEEEC
Confidence 46899999999998873 235799999987643 45799999874
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.70 E-value=3.1e-16 Score=152.51 Aligned_cols=118 Identities=24% Similarity=0.435 Sum_probs=98.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCC-CeEEEEEEeCCCCCCCcee
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYFNDDFV 79 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~-~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D~d~~~~d~~L 79 (971)
.|+|+|++|+||++. +.+||||++.+++.+ .+|++. ++.||.|||+|.|.+.++. ..|.|.|||++.++++++|
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i 80 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI 80 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence 489999999999875 478999999998754 688874 6899999999999874443 6799999999998999999
Q ss_pred EEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 002081 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (971)
Q Consensus 80 G~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~ 127 (971)
|++.+|+..+.. +...+.||+|.+... ......|+|+|+++|..
T Consensus 81 G~v~i~l~~l~~---~~~~~~W~~L~~~~~-~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 81 AEVTVQLSKLQN---GQETDEWYPLSSASP-LKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEHhHccC---CCcccEeEEcccCCC-CCCCcCcEEEEEEEEEc
Confidence 999999998854 234689999997643 22357899999999974
No 23
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.69 E-value=7.4e-17 Score=159.21 Aligned_cols=91 Identities=44% Similarity=0.749 Sum_probs=87.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (971)
.|+|+|++|.||..+|..+.+||||++++++++.+|+++.+++||+|||+|.|.+.++...|.++|||+|.++.||++|+
T Consensus 7 LL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~ 86 (168)
T KOG1030|consen 7 LLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGE 86 (168)
T ss_pred EEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccce
Confidence 48999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccc
Q 002081 82 LKIPVSRVFDA 92 (971)
Q Consensus 82 v~I~l~~l~~~ 92 (971)
++|++..+...
T Consensus 87 A~I~l~p~~~~ 97 (168)
T KOG1030|consen 87 ATIPLKPLLEA 97 (168)
T ss_pred eeeccHHHHHH
Confidence 99999998753
No 24
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.69 E-value=3.7e-16 Score=150.85 Aligned_cols=118 Identities=30% Similarity=0.502 Sum_probs=101.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~-~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (971)
|.|+|++|+||++++.+|.+||||++.+++.. .+|+++.++.||.|||.|.|.+......|.|.|||++.++++++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 89999999999999999999999999998764 79999999999999999999997666899999999999999999999
Q ss_pred EEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEE
Q 002081 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (971)
Q Consensus 82 v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~ 124 (971)
+.+++..+... ....+.|++|.+.... ....|+|+|.+.
T Consensus 82 ~~~~~~~~~~~--~~~~~~W~~L~~~~~~--~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAH--PRGIDGWMNLTEVDPD--EEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccC--CCCCCcEEECeeeCCC--CccccEEEEEEE
Confidence 99998887531 2236799999875432 356899998875
No 25
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=1.3e-16 Score=158.99 Aligned_cols=118 Identities=36% Similarity=0.526 Sum_probs=96.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEe---------------CC-C
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVE---------------DL-K 60 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~---------------~~-~ 60 (971)
+|.|+|++|+||++ .+|.+||||+|.+.+ .+++|+++.++.||+|||+|.|.+. +. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999998 578999999999975 5689999999999999999999984 11 2
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCC--------CCCcceEEEEEE
Q 002081 61 DELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS--------KNKDCGEILLTI 123 (971)
Q Consensus 61 ~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~--------~~~~~G~I~L~i 123 (971)
..|.|.|||++.+++++|||++.|++..+... ......||+|.++..++ +....|.|+|.+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~--~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ--AGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccccc--CCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999998543 12468999999775433 223467777654
No 26
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.68 E-value=2.8e-16 Score=151.92 Aligned_cols=99 Identities=32% Similarity=0.529 Sum_probs=87.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEE-e--C-CCCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-E--D-LKDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v-~--~-~~~~L~V~V~D~d~ 72 (971)
+|.|+|++|+||++++ .+.+||||++.+. ..+++|++++++.||.|||+|.|.+ + + ....|.|+|||++.
T Consensus 14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~ 92 (122)
T cd08381 14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS 92 (122)
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence 6899999999999999 8999999999996 3468999999999999999999997 3 2 35789999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEc
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L 104 (971)
++++++||++.+++.++.. ....+.||+|
T Consensus 93 ~~~~~~lG~~~i~l~~l~~---~~~~~~W~~L 121 (122)
T cd08381 93 LVENEFLGGVCIPLKKLDL---SQETEKWYPL 121 (122)
T ss_pred CcCCcEEEEEEEecccccc---CCCccceEEC
Confidence 9999999999999999854 2346899987
No 27
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.68 E-value=3.4e-17 Score=142.08 Aligned_cols=67 Identities=40% Similarity=0.726 Sum_probs=48.7
Q ss_pred hhhhcccCCCCCCeeEEEEEeeEee-ecccCeeEEeecceeEEeeccCCcee-EEEEeccccccccccC
Q 002081 645 SAFQKLFGLPPEEFLINDFTCHLKR-KMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVLP 711 (971)
Q Consensus 645 ~~f~~lF~lp~~E~Li~~f~Cal~~-~~~~~GrlYls~~~lcF~S~~~g~~t-k~~ip~~dI~~I~k~~ 711 (971)
++||++|+||.+|.|+.+|.|+|++ +++.+|+||||++||||+|+.+|..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 4799999999999999999999999 99999999999999999999999888 9999999999999863
No 28
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=6e-16 Score=149.82 Aligned_cols=119 Identities=24% Similarity=0.427 Sum_probs=101.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCC--Cce
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-RQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFN--DDF 78 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-~~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~--d~~ 78 (971)
.|+|+|++|+||+.++..+.+||||++.++ .+.++|+++.++.||.|||+|.|.+.. ...|.|+|||++.++. +++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 389999999999999999999999999996 667999999999999999999999954 7899999999998765 579
Q ss_pred eEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEE
Q 002081 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (971)
Q Consensus 79 LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i 123 (971)
||++.+++.++.... .....|++|............|+|.+.+
T Consensus 80 lG~~~i~l~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLK--DTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccC--CCccceeEeecCCCCCCceEeeEEEEEe
Confidence 999999999986532 2357799998665544456789999875
No 29
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.68 E-value=4.7e-16 Score=149.55 Aligned_cols=113 Identities=32% Similarity=0.475 Sum_probs=97.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeCC-CCeEEEEEEeCCCCCCCce
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDF 78 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~---~~~~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~ 78 (971)
|+|+|++|+||+..+..+.+||||++.++ ..+++|+++.++.||.|||+|.|.+... ...|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999999988999999999986 3568999999999999999999999443 46799999999998 8999
Q ss_pred eEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEE
Q 002081 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (971)
Q Consensus 79 LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~ 126 (971)
||++.+++.++.. +.....|++|.++ ..|+|++++.+.
T Consensus 81 iG~~~~~l~~l~~---g~~~~~~~~L~~~-------~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKL---GEKVRVTFSLNPQ-------GKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCC---CCcEEEEEECCCC-------CCceEEEEEEee
Confidence 9999999999854 2347899999854 369999988764
No 30
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.68 E-value=9.4e-16 Score=154.93 Aligned_cols=119 Identities=29% Similarity=0.477 Sum_probs=101.6
Q ss_pred EEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeeccCCCCCeecc
Q 002081 2 KLVVRVIEARNIPAMD------------------------------QNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEE 50 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d------------------------------~~g~sDPYv~v~l~~~~-~rTkvi~~t~nP~WnE 50 (971)
+|.|+|++|++|+.+| ..|.+||||+|.+++.+ .+|+++.++.||.|||
T Consensus 8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE 87 (158)
T cd04015 8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNE 87 (158)
T ss_pred eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccce
Confidence 5899999999999987 35678999999999765 6999999999999999
Q ss_pred EEEEEEeCCCCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 51 EFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 51 ~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
+|.|.+......|.|.|||+|.++ +++||++.+|+.++.. +...+.|++|.+..++. .+..|+|+|+++|
T Consensus 88 ~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~---g~~~~~w~~L~~~~~~~-~~~~~~l~v~~~f 157 (158)
T cd04015 88 SFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLS---GEPVEGWLPILDSNGKP-PKPGAKIRVSLQF 157 (158)
T ss_pred EEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccC---CCCcceEEECcCCCCCC-CCCCCEEEEEEEE
Confidence 999999777788999999999864 6899999999999864 33468999998765443 2457899999988
No 31
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=5e-16 Score=149.31 Aligned_cols=102 Identities=27% Similarity=0.442 Sum_probs=87.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE-C----C--eEEEeeeccCCCCCeeccEEEEEEeCC----CCeEEEEEEeC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-G----R--QRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDE 70 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l-~----~--~~~rTkvi~~t~nP~WnE~F~F~v~~~----~~~L~V~V~D~ 70 (971)
+|+|+|++|+||+..+ .|.+||||+|.+ + . ++++|+++.+++||+|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999999987 489999999998 2 2 357899999999999999999999532 25699999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccC
Q 002081 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (971)
Q Consensus 71 d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~ 107 (971)
|..+++++||++.+|+.++...+ ....|++|...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCc
Confidence 98788999999999999996533 46889999854
No 32
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.66 E-value=1.1e-15 Score=146.97 Aligned_cols=113 Identities=36% Similarity=0.662 Sum_probs=98.4
Q ss_pred EEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCeEEEEEEeCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQ------NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~------~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~ 74 (971)
.|+|+|++|+||+..+. .|.+||||++.+++..++|+++.++.||.|||+|.|.+.+ ....|.|+|||++..
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~- 80 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD- 80 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-
Confidence 48999999999998875 3689999999999999999999999999999999999953 468999999999987
Q ss_pred CCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
++++||++.+++.++... ...+.||+|.+. .+|+|+|.+++
T Consensus 81 ~~~~iG~~~i~l~~l~~~---~~~~~w~~L~~~-------~~G~~~~~~~~ 121 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKK---GFIDEWLPLEDV-------KSGRLHLKLEW 121 (121)
T ss_pred CCCcEEEEEEEHHHhccc---CccceEEECcCC-------CCceEEEEEeC
Confidence 899999999999998642 246899999853 46999998764
No 33
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.66 E-value=6.5e-16 Score=145.31 Aligned_cols=101 Identities=30% Similarity=0.490 Sum_probs=90.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCeEEEEEEeCCCCCCCceeEE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGF 81 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG~ 81 (971)
|.|+|++|+||+..+..+.+||||+++++++.++|+++.++.||.|||.|.|.+.++ ...|.|+|||++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 899999999999999889999999999999999999999999999999999999654 5789999999986 789999
Q ss_pred EEEeCccccccCCCCCCcEEEEcccC
Q 002081 82 LKIPVSRVFDADNKSLPTAWHSLQPK 107 (971)
Q Consensus 82 v~I~l~~l~~~~~~~~~~~W~~L~~~ 107 (971)
+.+++.++...+ +...+.||+|.++
T Consensus 79 ~~i~l~~l~~~~-~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP-DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc-cceeeeeEecCCC
Confidence 999999997643 3457899999854
No 34
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=8.6e-16 Score=152.48 Aligned_cols=105 Identities=28% Similarity=0.423 Sum_probs=90.6
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEE-eCCCCC
Q 002081 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVL-DEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d-~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~-D~d~~~ 74 (971)
+|.|+|++|+||++.+ ..|.+||||++.+.. .+++|+++++++||+|||+|.|.+......|.|+|| |++.+.
T Consensus 30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~ 109 (146)
T cd04028 30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMD 109 (146)
T ss_pred EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCC
Confidence 6899999999999874 578899999999942 368999999999999999999999866789999999 678888
Q ss_pred CCceeEEEEEeCccccccCCCCCCcEEEEcccCCC
Q 002081 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNK 109 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~ 109 (971)
++++||++.|+|.++.. ......||+|.+...
T Consensus 110 ~~~~iG~~~i~L~~l~~---~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 110 KKVFMGVAQILLDDLDL---SNLVIGWYKLFPTSS 141 (146)
T ss_pred CCceEEEEEEEcccccC---CCCceeEEecCCccc
Confidence 89999999999999843 234679999997653
No 35
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.66 E-value=6e-16 Score=150.85 Aligned_cols=104 Identities=25% Similarity=0.348 Sum_probs=90.7
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~-g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~ 72 (971)
+|.|+|++|+||++++.. |.+||||++.+.+ .+++|++++++.||+|||+|.|.+... ...|.|.|||.+.
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 689999999999999875 8999999999952 367999999999999999999998432 4689999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEcc
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~ 105 (971)
++++++||++.|++.++...+.......||+|.
T Consensus 96 ~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 899999999999999996554455678999983
No 36
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.66 E-value=6.1e-16 Score=147.25 Aligned_cols=97 Identities=23% Similarity=0.386 Sum_probs=81.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~----~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~ 74 (971)
+|+|+|++|+||+ ..|.+||||++.+.. .+++|+++++|+||+|||+|.|.++. ....|.+.|||+|.++
T Consensus 15 ~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs 91 (118)
T cd08677 15 ELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFS 91 (118)
T ss_pred EEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCC
Confidence 6999999999998 246699999999963 46899999999999999999999943 3578999999999999
Q ss_pred CCceeEEEEEeCccccccCCCCCCcEEEEc
Q 002081 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L 104 (971)
++++||++.+++.++.. ......|.+|
T Consensus 92 ~~d~IG~v~l~l~~~~~---~~~~~~W~~~ 118 (118)
T cd08677 92 RHSTLGELRLKLADVSM---MLGAAQWVDL 118 (118)
T ss_pred CCceEEEEEEccccccC---CccccchhcC
Confidence 99999999999998632 2234567654
No 37
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1.1e-15 Score=146.93 Aligned_cols=100 Identities=30% Similarity=0.465 Sum_probs=88.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (971)
+|.|+|++|++|+.++ ..||||++.+++++.+|+++++ .||.|||+|.|.+.+....|.|+|||++.+ .|++||+
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 6999999999997654 4689999999999999999987 599999999999987777899999999964 8999999
Q ss_pred EEEeCccccccCCCCCCcEEEEcccC
Q 002081 82 LKIPVSRVFDADNKSLPTAWHSLQPK 107 (971)
Q Consensus 82 v~I~l~~l~~~~~~~~~~~W~~L~~~ 107 (971)
+.|||.++...+ ..+..+||+|.+.
T Consensus 78 v~i~L~~v~~~~-~~~~~~Wy~L~~~ 102 (127)
T cd08394 78 VWIPLSTIRQSN-EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEhHHcccCC-CCCCCccEecChH
Confidence 999999998753 4567999999965
No 38
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=8.5e-16 Score=145.79 Aligned_cols=104 Identities=37% Similarity=0.684 Sum_probs=92.0
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEEEeeeccCCCCCee-ccEEEEEEeCC---CCeEEEEEEeCCCCCCCc
Q 002081 3 LVVRVIEARNIPAMDQ-NGYSDPYVRLQLGRQRFKTKVVRKSLSPSW-EEEFSFKVEDL---KDELVISVLDEDKYFNDD 77 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~-~g~sDPYv~v~l~~~~~rTkvi~~t~nP~W-nE~F~F~v~~~---~~~L~V~V~D~d~~~~d~ 77 (971)
|.|+|++|+||++++. .+.+||||++.+++.+++|+++.++.||.| ||+|.|.+... ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999999884 788999999999999999999999999999 99999999542 478999999999999999
Q ss_pred eeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 78 ~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
+||++.+++.++...+.....+.||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999976433445789999974
No 39
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.65 E-value=8.8e-16 Score=149.15 Aligned_cols=101 Identities=32% Similarity=0.472 Sum_probs=87.8
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~-g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (971)
+|.|+|++|+||++++.. |.+||||++.+. ..+++|++++++.||+|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 699999999999999975 899999999994 235799999999999999999999842 24689999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEcc
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~ 105 (971)
++++++||++.++|.++... .....||+|+
T Consensus 96 ~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 125 (125)
T cd08393 96 LGRNSFLGEVEVDLGSWDWS---NTQPTWYPLQ 125 (125)
T ss_pred CCCCcEeEEEEEecCccccC---CCCcceEECc
Confidence 99999999999999998432 3468899985
No 40
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.64 E-value=4.1e-15 Score=144.29 Aligned_cols=118 Identities=27% Similarity=0.420 Sum_probs=100.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEEeC-CCCeEEEEEEeCCCCCCCc
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDD 77 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~---~~~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~ 77 (971)
.|+|+|++|+||+..+.++.+||||++.+++ ..++|+++.++.||.|||+|.|.+.. ....|.|+|||++.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999999999999999999864 35899999999999999999999955 3578999999999988999
Q ss_pred eeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 78 ~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
+||++.+++..+...+.+...+.|++|.+ .|+|+|.+.|...
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~---------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT---------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC---------CCeEEEEEEEeee
Confidence 99999999987654322334678999973 4899999998754
No 41
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.63 E-value=2.6e-15 Score=145.79 Aligned_cols=101 Identities=27% Similarity=0.396 Sum_probs=87.4
Q ss_pred EEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQ-NGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~-~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (971)
+|.|+|++|+||++.+. .|.+||||++.+. ..+++|++++++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 16 SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 69999999999998875 5789999999984 235899999999999999999999943 24689999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEcc
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~ 105 (971)
++++++||++.+++..+... ...+.||+|+
T Consensus 96 ~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 96 FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 99999999999999998542 3478999985
No 42
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.62 E-value=8.3e-15 Score=143.54 Aligned_cols=115 Identities=26% Similarity=0.434 Sum_probs=99.7
Q ss_pred EEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeC
Q 002081 2 KLVVRVIEARNIPAMDQN----------GYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE 70 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~----------g~sDPYv~v~l~~~~-~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~ 70 (971)
.|+|+|++|+||++.+.. +.+||||++.+++++ .+|+++.++.||.|||+|.|.+. ....|.|.|||+
T Consensus 5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~ 83 (132)
T cd04014 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHD 83 (132)
T ss_pred EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeC
Confidence 589999999999988863 679999999999765 69999999999999999999996 458899999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 002081 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (971)
Q Consensus 71 d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~ 127 (971)
+.++.+++||++.+++.++... .....+.|++|.+ .|+|+|.++|..
T Consensus 84 ~~~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~---------~G~l~l~~~~~~ 130 (132)
T cd04014 84 AAIGPDDFVANCTISFEDLIQR-GSGSFDLWVDLEP---------QGKLHVKIELKG 130 (132)
T ss_pred CCCCCCceEEEEEEEhHHhccc-CCCcccEEEEccC---------CcEEEEEEEEec
Confidence 9888899999999999998653 1234689999972 499999999875
No 43
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=3.9e-15 Score=143.70 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=99.1
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--eEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCce
Q 002081 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR--QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d-~~g~sDPYv~v~l~~--~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~ 78 (971)
.|+|+|++|+||+..+ ..+.+||||++.+++ ..++|+++.++.||.|||.|.|.+......|.|+|||++.++++++
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~ 82 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKL 82 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCce
Confidence 5899999999999765 356799999999987 7899999999999999999999998667899999999999889999
Q ss_pred eEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 002081 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (971)
Q Consensus 79 LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~ 127 (971)
||++.+++.++..... ....|+.|.. . .+.+|+|+++++|.|
T Consensus 83 iG~~~~~l~~l~~~~~--~~~~~~~~~~-~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 83 IGTAEFDLSSLLQNPE--QENLTKNLLR-N----GKPVGELNYDLRFFP 124 (124)
T ss_pred eEEEEEEHHHhccCcc--ccCcchhhhc-C----CccceEEEEEEEeCC
Confidence 9999999999975332 2234555542 2 245799999999964
No 44
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=8.2e-15 Score=142.58 Aligned_cols=116 Identities=22% Similarity=0.391 Sum_probs=100.6
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCCCCCCceeEEEE
Q 002081 7 VIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFNDDFVGFLK 83 (971)
Q Consensus 7 Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~~d~~LG~v~ 83 (971)
|++|+||+. ..|.+||||++.+++.+++|++++++.||.|||+|.|.+.. ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999988 67889999999999999999999999999999999999953 4688999999999988999999999
Q ss_pred EeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEecCC
Q 002081 84 IPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (971)
Q Consensus 84 I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~~ 130 (971)
+++.++... .....|++|.+..++ ...|+|++.++|.+...
T Consensus 80 ~~l~~l~~~---~~~~~~~~L~~~~~~---~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 80 VSLQDLVSE---GLLEVTEPLLDSNGR---PTGATISLEVSYQPPDG 120 (127)
T ss_pred EEhhHcccC---CceEEEEeCcCCCCC---cccEEEEEEEEEeCCCC
Confidence 999998652 346789999865543 34799999999987644
No 45
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=3.9e-15 Score=148.83 Aligned_cols=107 Identities=26% Similarity=0.499 Sum_probs=92.5
Q ss_pred EEEEEEEEeeCCCCCCCCC--------------CCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEe--CCCCeEEE
Q 002081 2 KLVVRVIEARNIPAMDQNG--------------YSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVI 65 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g--------------~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~--~~~~~L~V 65 (971)
+|.|+|++|++|+++|..+ .+||||+|.+++++.+|++++++.||+|||+|.|.+. .....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4899999999999998554 6899999999999999999999999999999999973 34578999
Q ss_pred EEEeCCCCCCCceeEEEEEeCccccccCCC----CCCcEEEEcccCC
Q 002081 66 SVLDEDKYFNDDFVGFLKIPVSRVFDADNK----SLPTAWHSLQPKN 108 (971)
Q Consensus 66 ~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~----~~~~~W~~L~~~~ 108 (971)
+|||+|..++|++||.+.+++.++...+.. ..++.|+.|....
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 999999988999999999999998654321 2468999998553
No 46
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=3.9e-15 Score=141.43 Aligned_cols=101 Identities=31% Similarity=0.510 Sum_probs=90.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-----CCeEEEEEEeCCCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYFND 76 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~-----~~~L~V~V~D~d~~~~d 76 (971)
.|+|+|++|+||+ +|.+||||++.+++++++|+++.++.||.|||+|.|.+..+ ...|.|+|||++.++++
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 5899999999998 57899999999999999999999999999999999998432 36899999999998889
Q ss_pred ceeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 77 ~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
++||++.+++.++...+.......|++|..
T Consensus 81 ~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 81 TLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999999987666667889999974
No 47
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.60 E-value=3.9e-15 Score=144.31 Aligned_cols=116 Identities=21% Similarity=0.374 Sum_probs=99.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeecc-CCCCCeeccEEEEEEeCC-----CCeEEEEEEeCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVR-KSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-~~~rTkvi~-~t~nP~WnE~F~F~v~~~-----~~~L~V~V~D~d~~~ 74 (971)
+|+|+|++|++|+..+..+.+||||++.+++ .+.+|+++. ++.||.|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999988 789999986 489999999999999555 588999999999888
Q ss_pred CCceeEEEEEeCccccccCCC--CCCcEEEEcccCCCCCCCCcceEEEE
Q 002081 75 NDDFVGFLKIPVSRVFDADNK--SLPTAWHSLQPKNKKSKNKDCGEILL 121 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~--~~~~~W~~L~~~~~k~~~~~~G~I~L 121 (971)
++++||++.+++.++...... .....||+|....+ +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g----~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG----KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC----CcCeEEeC
Confidence 899999999999999764422 13578999997664 45688864
No 48
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.60 E-value=5.6e-15 Score=142.96 Aligned_cols=101 Identities=31% Similarity=0.572 Sum_probs=87.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC----CCCeEEEEEEeCC
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDED 71 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~----~~~~L~V~V~D~d 71 (971)
++|.|+|++|+||+..+.++.+||||++.+.+ .+++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~ 95 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD 95 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence 47999999999999999889999999999964 56899999999999999999998632 3478999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCCCCCcEEEEcc
Q 002081 72 KYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (971)
Q Consensus 72 ~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~ 105 (971)
.++++++||++.+++.+... + ....||+|+
T Consensus 96 ~~~~~~~iG~~~i~l~~~~~-~---~~~~W~~L~ 125 (125)
T cd04031 96 RDGENDFLGEVVIDLADALL-D---DEPHWYPLQ 125 (125)
T ss_pred CCCCCcEeeEEEEecccccc-c---CCcceEECc
Confidence 98899999999999998322 1 257899985
No 49
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.60 E-value=4.5e-15 Score=142.89 Aligned_cols=100 Identities=26% Similarity=0.498 Sum_probs=85.2
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--CCCeEEEEEEeCCCC
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKY 73 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~--~~~~L~V~V~D~d~~ 73 (971)
.+|.|+|++|+||++++ .|.+||||++.+.+ .+++|+++.++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 37999999999999998 78999999999963 36799999999999999999999833 346799999999876
Q ss_pred C-CCceeEEEEEeCccccccCCCCCCcEEEEc
Q 002081 74 F-NDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (971)
Q Consensus 74 ~-~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L 104 (971)
. ++++||++.||+.++.. +.....||.|
T Consensus 91 ~~~~~~lG~~~i~l~~~~~---~~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVN---QKEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhcc---CccccceEeC
Confidence 5 47899999999999963 2335899986
No 50
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.60 E-value=6.6e-15 Score=142.56 Aligned_cols=101 Identities=30% Similarity=0.572 Sum_probs=89.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeCC---CCeEEEEEEeCCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFN 75 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~---~~~~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~~~~ 75 (971)
+|.|+|++|+||++.+..|.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.|+|||++.+++
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 96 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSR 96 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCC
Confidence 589999999999999999999999999994 3468999999999999999999998432 4689999999999889
Q ss_pred CceeEEEEEeCccccccCCCCCCcEEEEcc
Q 002081 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (971)
Q Consensus 76 d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~ 105 (971)
+++||++.+++.++...+ ..+.||+|+
T Consensus 97 ~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 97 DECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred CceeEEEEEecccccCCC---CcceEEECc
Confidence 999999999999996432 468999987
No 51
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.60 E-value=8.7e-15 Score=141.66 Aligned_cols=101 Identities=40% Similarity=0.684 Sum_probs=89.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN 75 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~---~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~~ 75 (971)
+|.|+|++|+||++++..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+.. ....|.|+|||++.+++
T Consensus 17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~ 96 (124)
T cd08385 17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSK 96 (124)
T ss_pred EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCC
Confidence 6999999999999999999999999999853 46899999999999999999999843 24689999999999999
Q ss_pred CceeEEEEEeCccccccCCCCCCcEEEEcc
Q 002081 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (971)
Q Consensus 76 d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~ 105 (971)
+++||++.+++.++.. +...++|++|.
T Consensus 97 ~~~lG~~~i~l~~~~~---~~~~~~W~~l~ 123 (124)
T cd08385 97 HDLIGEVRVPLLTVDL---GHVTEEWRDLE 123 (124)
T ss_pred CceeEEEEEecCcccC---CCCcceEEEcc
Confidence 9999999999999844 33578999986
No 52
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.60 E-value=8.6e-15 Score=141.82 Aligned_cols=103 Identities=34% Similarity=0.627 Sum_probs=89.4
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeC----CCCeEEEEEEeCCCC
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~---~~~~rTkvi~~t~nP~WnE~F~F~v~~----~~~~L~V~V~D~d~~ 73 (971)
++|.|+|++|+||+..+..+.+||||++.+. ..+.+|++++++.||.|||+|.|.+.. ....|.++|||++.+
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 5799999999999999989999999999983 456899999999999999999998521 236799999999998
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
+++++||++.+++.++.. ......|+.|++
T Consensus 96 ~~~~~iG~~~i~l~~l~~---~~~~~~W~~l~~ 125 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDL---TEEQTFWKDLKP 125 (125)
T ss_pred cCCcEeeEEEEecccccC---CCCcceEEecCC
Confidence 899999999999999854 334789999974
No 53
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.59 E-value=1e-14 Score=142.33 Aligned_cols=104 Identities=37% Similarity=0.600 Sum_probs=87.8
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEE-Ee--C-CCCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VE--D-LKDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~-g~sDPYv~v~l~---~~~~rTkvi~~t~nP~WnE~F~F~-v~--~-~~~~L~V~V~D~d~~ 73 (971)
+|.|+|++|+||++.+.. +.+||||++.+. .++.+|++++++.||.|||+|.|. ++ + ....|.+.|||+|.+
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence 699999999999998876 889999999985 346799999999999999999994 42 1 235799999999999
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
+++++||++.+++.++...+.+ ....|.+|++
T Consensus 97 ~~d~~lG~~~i~L~~l~~~~~~-~~~~~~~~~~ 128 (128)
T cd08388 97 SRDDVIGEVVCPLAGADLLNEG-ELLVSREIQP 128 (128)
T ss_pred CCCceeEEEEEeccccCCCCCc-eEEEEEeccC
Confidence 9999999999999998653322 3678998874
No 54
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=2.5e-14 Score=141.80 Aligned_cols=119 Identities=18% Similarity=0.337 Sum_probs=99.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCC-C---CCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDK-Y---FND 76 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~-~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~-~---~~d 76 (971)
.|.|.|++|++||+++ +|||.+.+++++ .||+++.++.||.|+|+|.|....+...|.|.||+.+. . .++
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~ 86 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKS 86 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCC
Confidence 5899999999999864 799999999988 69999999999999999999875556789999986553 2 267
Q ss_pred ceeEEEEEeCccccccCCCCCCcEEEEcccCCCCC------CCCcceEEEEEEEEEec
Q 002081 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS------KNKDCGEILLTISFSHN 128 (971)
Q Consensus 77 ~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~------~~~~~G~I~L~i~~~~~ 128 (971)
++||.+.||+.++.. +...+.||+|.+..+++ .....++|+++++|.+.
T Consensus 87 ~~IG~V~Ip~~~l~~---~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 87 QLIGTVNIPVTDVSS---RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cEEEEEEEEHHHhcC---CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 899999999999963 44579999999876653 12456899999999764
No 55
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.59 E-value=6.2e-15 Score=140.08 Aligned_cols=98 Identities=30% Similarity=0.589 Sum_probs=86.3
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeC----CCCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~-g~sDPYv~v~l~---~~~~rTkvi~~t~nP~WnE~F~F~v~~----~~~~L~V~V~D~d~~ 73 (971)
.|+|+|++|+||++.+.. +.+||||++.+. +...+|+++++++||.|||+|.|.+.. ....|.++|||+|.+
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~ 81 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRF 81 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence 589999999999999988 899999999984 346899999999999999999998843 347899999999999
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEcc
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~ 105 (971)
+++++||++.+++.++.. ...|+++.
T Consensus 82 ~~dd~lG~~~i~l~~l~~------~~~~~~~~ 107 (111)
T cd04041 82 TADDRLGRVEIDLKELIE------DRNWMGRR 107 (111)
T ss_pred CCCCcceEEEEEHHHHhc------CCCCCccc
Confidence 999999999999999953 45687775
No 56
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=3.2e-14 Score=140.14 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=99.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------eEEEeeeccCCCCCee-ccEEEEEEeCCCCeEEEEE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-------------QRFKTKVVRKSLSPSW-EEEFSFKVEDLKDELVISV 67 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-------------~~~rTkvi~~t~nP~W-nE~F~F~v~~~~~~L~V~V 67 (971)
...|++++|+||+ ++..|.+||||++.+.. ++++|+++.+++||+| ||+|.|.+. ..+.|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4689999999998 77789999999999942 3689999999999999 999999994 457899999
Q ss_pred EeCCCCCC---CceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEE
Q 002081 68 LDEDKYFN---DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (971)
Q Consensus 68 ~D~d~~~~---d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i 123 (971)
||++..++ +++||++.+|+.++...+.......||+|..++. .....|+|.|.+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTP--TDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCC--CCcEEEEEEEEe
Confidence 99865333 7899999999999987655555778999997764 356889999875
No 57
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.58 E-value=9.9e-15 Score=141.37 Aligned_cols=101 Identities=24% Similarity=0.384 Sum_probs=87.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CeEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG------RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~------~~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (971)
+|.|+|++|+||++.+..+.+||||++.+. ..+++|++++++.||+|||+|.|++.. ....|.|+|||.+.
T Consensus 15 ~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~ 94 (124)
T cd08680 15 SLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP 94 (124)
T ss_pred EEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC
Confidence 699999999999999888899999999983 247899999999999999999999943 35799999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEc
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L 104 (971)
++++++||++.|++.++...+ .....||+|
T Consensus 95 ~~~~~~lG~~~i~L~~~~~~~--~~~~~Wy~l 124 (124)
T cd08680 95 DQQEECLGGAQISLADFESSE--EMSTKWYNL 124 (124)
T ss_pred CCceeEEEEEEEEhhhccCCC--ccccccccC
Confidence 899999999999999984322 236789876
No 58
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.58 E-value=1.8e-14 Score=139.83 Aligned_cols=101 Identities=33% Similarity=0.496 Sum_probs=88.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~ 73 (971)
+|+|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||.|||+|.|.+.. ....|.|.|||.+.+
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~ 96 (127)
T cd04030 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF 96 (127)
T ss_pred EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc
Confidence 699999999999999998999999999995 357899999999999999999999843 247899999999875
Q ss_pred --CCCceeEEEEEeCccccccCCCCCCcEEEEcc
Q 002081 74 --FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (971)
Q Consensus 74 --~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~ 105 (971)
+++++||++.+++.++.. +.....||+|.
T Consensus 97 ~~~~~~~iG~~~i~l~~l~~---~~~~~~W~~L~ 127 (127)
T cd04030 97 LSREKKLLGQVLIDLSDLDL---SKGFTQWYDLT 127 (127)
T ss_pred cCCCCceEEEEEEecccccc---cCCccceEECc
Confidence 689999999999999844 23468999984
No 59
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.57 E-value=1.5e-14 Score=136.77 Aligned_cols=91 Identities=25% Similarity=0.486 Sum_probs=81.1
Q ss_pred EEEEEEEEeeCCCCCCCC----CCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC--CCCeEEEEEEeCCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQN----GYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYFN 75 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~----g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~--~~~~L~V~V~D~d~~~~ 75 (971)
.|.|+|++|+||++.+.. +.+||||++.+++..++|++++++.||+|||.|.|.+.+ ....|.|+|||++.+++
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~ 81 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSF 81 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCC
Confidence 489999999999998642 358999999999999999999999999999999999843 34589999999999999
Q ss_pred CceeEEEEEeCcccccc
Q 002081 76 DDFVGFLKIPVSRVFDA 92 (971)
Q Consensus 76 d~~LG~v~I~l~~l~~~ 92 (971)
+++||++.++|.++...
T Consensus 82 dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 82 NDYVATGSLSVQELLNA 98 (108)
T ss_pred CcceEEEEEEHHHHHhh
Confidence 99999999999999754
No 60
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.57 E-value=1.6e-14 Score=140.17 Aligned_cols=102 Identities=34% Similarity=0.491 Sum_probs=88.1
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEE-EeC---CCCeEEEEEEeCCCC
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VED---LKDELVISVLDEDKY 73 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~---~~~~rTkvi~~t~nP~WnE~F~F~-v~~---~~~~L~V~V~D~d~~ 73 (971)
.+|.|+|++|+||++.+..|.+||||++.+. .++++|+++++ .||+|||+|.|+ +.. ....|.+.|||++.+
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 4799999999999999988999999998773 35689999887 999999999998 532 357899999999999
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
+++++||++.|++.++.. ......||+|++
T Consensus 95 ~~~~~lG~~~i~L~~l~~---~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNL---EGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCC---CCCceEEEeCCC
Confidence 999999999999999944 335789999974
No 61
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.7e-14 Score=166.98 Aligned_cols=150 Identities=34% Similarity=0.529 Sum_probs=125.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEEe---CCCCeEEEEEEeCCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDKYFN 75 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~---~~~rTkvi~~t~nP~WnE~F~F~v~---~~~~~L~V~V~D~d~~~~ 75 (971)
.|.|+|++|++|++++..|.+||||++.+.. .+.+|++.++++||.|||+|.|.+. .....|.+.|||+|+|++
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr 247 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSR 247 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCccc
Confidence 5899999999999999777899999999964 4689999999999999999999972 346899999999999999
Q ss_pred CceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEecCCCCcccCCCCCCCcCcCCCCCCCCCC
Q 002081 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSSADFNINSDPLDQLKTTESPKRSFS 155 (971)
Q Consensus 76 d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~ 155 (971)
+++||++.+++..+... .....|.+|......... ..|+|+++++|.+.... +.+..+.+.++..++.+
T Consensus 248 ~~~iGev~~~l~~~~~~---~~~~~w~~l~~~~~~~~~-~~gel~~sL~Y~p~~g~-------ltv~v~kar~L~~~~~~ 316 (421)
T KOG1028|consen 248 HDFIGEVILPLGEVDLL---STTLFWKDLQPSSTDSEE-LAGELLLSLCYLPTAGR-------LTVVVIKARNLKSMDVG 316 (421)
T ss_pred ccEEEEEEecCcccccc---ccceeeeccccccCCccc-ccceEEEEEEeecCCCe-------EEEEEEEecCCCcccCC
Confidence 99999999998887432 225789999987544332 33899999999987443 44667888899999999
Q ss_pred CCCCCCC
Q 002081 156 GPSNAPS 162 (971)
Q Consensus 156 g~s~~~s 162 (971)
+.++++.
T Consensus 317 ~~~d~~V 323 (421)
T KOG1028|consen 317 GLSDPYV 323 (421)
T ss_pred CCCCccE
Confidence 9998664
No 62
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.57 E-value=3.4e-15 Score=126.32 Aligned_cols=59 Identities=37% Similarity=0.564 Sum_probs=56.9
Q ss_pred CCCCCCeeEEEEEeeEeeecccCeeEEeecceeEEeeccCCcee-EEEEecccccccccc
Q 002081 652 GLPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVL 710 (971)
Q Consensus 652 ~lp~~E~Li~~f~Cal~~~~~~~GrlYls~~~lcF~S~~~g~~t-k~~ip~~dI~~I~k~ 710 (971)
+||++|.|+++|.|+|+++++++||||||++||||+|+.+|+.+ +++||+.||.+|+|.
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 48999999999999999999999999999999999999999988 999999999999986
No 63
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=3.1e-14 Score=136.08 Aligned_cols=112 Identities=28% Similarity=0.444 Sum_probs=89.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCCCCCCce
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFNDDF 78 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~~d~~ 78 (971)
|+|+|++|+||+.. +.+||||++.+++. .++|+++.+ .||.|||+|.|.+.. ....|.|.+||.+....+.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999875 489999999 999999999999955 23578888999887666666
Q ss_pred eEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 79 LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
+|.+.|..... +...+.||+|.++... ....|+|+|.+.|
T Consensus 78 ~g~v~l~~~~~-----~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDL-----GQGKDEWFPLTPVDPD--SEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCC-----CCcceeEEECccCCCC--CCcCceEEEEEEC
Confidence 77655544332 3346899999987543 3568999999876
No 64
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.55 E-value=3.6e-14 Score=136.94 Aligned_cols=101 Identities=27% Similarity=0.453 Sum_probs=87.3
Q ss_pred CEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCC
Q 002081 1 MKLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d-~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d 71 (971)
.+|.|+|++|+||++.+ ..+.+||||++.+.+ .+++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 93 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD 93 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence 36999999999999998 778999999999842 46899999999999999999999843 2468999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCCCCCcEEEEc
Q 002081 72 KYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (971)
Q Consensus 72 ~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L 104 (971)
.++++++||++.+++.++.. +.....||+|
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~---~~~~~~w~~l 123 (123)
T cd08521 94 RFGRNTFLGEVEIPLDSWDL---DSQQSEWYPL 123 (123)
T ss_pred CCcCCceeeEEEEecccccc---cCCCccEEEC
Confidence 98999999999999999853 2346899987
No 65
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.55 E-value=4.6e-14 Score=136.68 Aligned_cols=104 Identities=32% Similarity=0.565 Sum_probs=93.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeCC----CCeEEEEEEeCCCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL----KDELVISVLDEDKYFND 76 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~-t~nP~WnE~F~F~v~~~----~~~L~V~V~D~d~~~~d 76 (971)
+|.|+|++|+||+..+..+.+||||++.+++..++|+++.+ +.||.|||+|.|.+..+ ...|.|+|||.+.+.++
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d 81 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDD 81 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCC
Confidence 68999999999999998899999999999998899999885 89999999999999665 47899999999998899
Q ss_pred ceeEEEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 77 ~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
++||++.+++.++...+ ..+.|+.|.+..
T Consensus 82 ~~iG~~~i~l~~l~~~~---~~~~~~~l~p~~ 110 (124)
T cd04049 82 DFIGEATIHLKGLFEEG---VEPGTAELVPAK 110 (124)
T ss_pred CeEEEEEEEhHHhhhCC---CCcCceEeeccc
Confidence 99999999999997633 368999999753
No 66
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.53 E-value=1.2e-13 Score=134.16 Aligned_cols=119 Identities=24% Similarity=0.391 Sum_probs=98.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (971)
+|.|+|++|+ |...+..+.+||||++.+++. .++|+++.++.||.|||+|.|.+. ....|.|+|||++..+.+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 5899999999 555555788999999999887 799999999999999999999985 3578999999999988999999
Q ss_pred EEEEeCccccccCCCCCCc--EEEEcccCCCCCCCCcceEEEEEE
Q 002081 81 FLKIPVSRVFDADNKSLPT--AWHSLQPKNKKSKNKDCGEILLTI 123 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~--~W~~L~~~~~k~~~~~~G~I~L~i 123 (971)
++.+++.++...+.+.... .|++|..... ...+..|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENK-GSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCC-CcceeeeeEEEEe
Confidence 9999999997655444433 5888885442 1346789998875
No 67
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=6.7e-14 Score=134.97 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=92.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (971)
.|+|+|++|+||+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+......|.|+|||++.++++++||
T Consensus 2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG 81 (120)
T cd04045 2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLG 81 (120)
T ss_pred eEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeee
Confidence 4899999999999999899999999999976 468999999999999999999999777789999999999999999999
Q ss_pred EEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 81 FLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
++.+++.++... ..+.||.|.+..
T Consensus 82 ~~~~~l~~l~~~----~~~~~~~~~~~~ 105 (120)
T cd04045 82 SVEINVSDLIKK----NEDGKYVEYDDE 105 (120)
T ss_pred EEEEeHHHhhCC----CCCceEEecCCC
Confidence 999999999763 358899988654
No 68
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.53 E-value=1.3e-13 Score=133.81 Aligned_cols=116 Identities=27% Similarity=0.502 Sum_probs=97.9
Q ss_pred CEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEC------CeEEEeeeccCCC-CCeeccEEEEEEeCCC-CeEEEEEEeC
Q 002081 1 MKLVVRVIEARNIPAMD--QNGYSDPYVRLQLG------RQRFKTKVVRKSL-SPSWEEEFSFKVEDLK-DELVISVLDE 70 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d--~~g~sDPYv~v~l~------~~~~rTkvi~~t~-nP~WnE~F~F~v~~~~-~~L~V~V~D~ 70 (971)
|+|+|+|++|+||+..+ ..+.+||||++.+. ..+.+|+++.++. ||.|||+|.|.+..+. ..|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 78999999999999888 57889999999993 4568999988775 9999999999996544 5799999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 71 d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
+.. ++++||++.+++.++.. +..|++|....+. ....|.|.+.+.+
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~------g~~~~~l~~~~~~--~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ------GYRHVPLLDSKGE--PLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC------ceEEEEecCCCCC--CCcceeEEEEEEE
Confidence 987 89999999999999832 4679999876554 2457999998875
No 69
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.53 E-value=7.3e-14 Score=134.87 Aligned_cols=102 Identities=30% Similarity=0.553 Sum_probs=88.3
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeCC---CCeEEEEEEeCCCCC
Q 002081 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d-~~g~sDPYv~v~l~---~~~~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~~~ 74 (971)
+|.|+|++|+||++.+ ..+.+||||++.+. ....+|++++++.||.|||.|.|.+... ...|.|+|||.+..+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~ 94 (123)
T cd08390 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFS 94 (123)
T ss_pred EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCC
Confidence 6899999999999998 68889999999984 3468899999999999999999998432 468999999999988
Q ss_pred CCceeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
++++||++.+++.++... .....|++|.+
T Consensus 95 ~~~~iG~~~i~L~~l~~~---~~~~~w~~L~~ 123 (123)
T cd08390 95 RHCIIGHVLFPLKDLDLV---KGGVVWRDLEP 123 (123)
T ss_pred CCcEEEEEEEeccceecC---CCceEEEeCCC
Confidence 899999999999998652 23579999873
No 70
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.53 E-value=5.3e-14 Score=138.86 Aligned_cols=102 Identities=33% Similarity=0.578 Sum_probs=90.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeEEEeeeccCCCCCeeccEEEEEEeCC----------------CCe
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG----RQRFKTKVVRKSLSPSWEEEFSFKVEDL----------------KDE 62 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~----~~~~rTkvi~~t~nP~WnE~F~F~v~~~----------------~~~ 62 (971)
|+|+|++|+||+.+ ..+.+||||++.++ ..+++|+++.++.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999988 78899999999998 6789999999999999999999998443 468
Q ss_pred EEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 63 LVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 63 L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
|.|+|||.+.++++++||++.+++.++.. ......||+|.++.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~---~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQ---AGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccC---CCcccceEecCCcC
Confidence 99999999998889999999999999863 22468999999875
No 71
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.53 E-value=6.7e-14 Score=139.24 Aligned_cols=90 Identities=38% Similarity=0.639 Sum_probs=84.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (971)
.|+|+|++|+||+..+. +.+||||++.++++..+|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||+
T Consensus 3 ~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~ 81 (145)
T cd04038 3 LLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE 81 (145)
T ss_pred EEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEE
Confidence 58999999999999887 88999999999999999999999999999999999998888899999999999999999999
Q ss_pred EEEeCcccccc
Q 002081 82 LKIPVSRVFDA 92 (971)
Q Consensus 82 v~I~l~~l~~~ 92 (971)
+.+++..+...
T Consensus 82 a~i~l~~l~~~ 92 (145)
T cd04038 82 AEIDLEPLVEA 92 (145)
T ss_pred EEEEHHHhhhh
Confidence 99999998653
No 72
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.52 E-value=5.2e-14 Score=138.18 Aligned_cols=94 Identities=33% Similarity=0.507 Sum_probs=83.0
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeEEEeeeccCCCCCeeccEEEEEEeC-----CCCeEEEEEE
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG-------RQRFKTKVVRKSLSPSWEEEFSFKVED-----LKDELVISVL 68 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-------~~~~rTkvi~~t~nP~WnE~F~F~v~~-----~~~~L~V~V~ 68 (971)
.+|+|+|++|++|++.+..+.+||||+|.+. ...++|++++++.||+|||+|.|.+.. ....|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 3699999999999999988999999999985 346899999999999999999999843 2468999999
Q ss_pred eCCCCCCCceeEEEEEeCccccccCC
Q 002081 69 DEDKYFNDDFVGFLKIPVSRVFDADN 94 (971)
Q Consensus 69 D~d~~~~d~~LG~v~I~l~~l~~~~~ 94 (971)
|++.++++++||++.+++.++..-++
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCcccc
Confidence 99998889999999999999975333
No 73
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.52 E-value=2e-13 Score=136.65 Aligned_cols=118 Identities=14% Similarity=0.275 Sum_probs=96.1
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEE-----CCeEEEeeeccCCCCCeeccEEEEEEeCC---------CCeEEEE
Q 002081 3 LVVRVIEARN--IPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVEDL---------KDELVIS 66 (971)
Q Consensus 3 L~V~Vi~Arn--L~~~d~~g~sDPYv~v~l-----~~~~~rTkvi~~t~nP~WnE~F~F~v~~~---------~~~L~V~ 66 (971)
+.++|..|++ |++.+.++.+||||++.+ ..++.+|+++++|+||+|||+|.|.+... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 778887889999999987 24679999999999999999999999543 3579999
Q ss_pred EEeCCCC-CCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 002081 67 VLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (971)
Q Consensus 67 V~D~d~~-~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~ 127 (971)
|||.+.+ .+|++||++.++|..+... .....|++|.... ....|+|++.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~---~~~~~~~~L~~~~----k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETK---CEIHESVDLMDGR----KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEccccccc---CcceEEEEhhhCC----CCcCCEEEEEEEecC
Confidence 9999986 5799999999999998542 2356799998432 257899999999864
No 74
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=1.2e-13 Score=131.66 Aligned_cols=112 Identities=34% Similarity=0.544 Sum_probs=95.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeC-CCCeEEEEEEeCCCCCCCceeE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-~~~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~LG 80 (971)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.+|.|||+|.|.+.. ....|.|+|||++.++++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999999888999999999975 45899999999999999999999954 4678999999999988999999
Q ss_pred EEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEE
Q 002081 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L 121 (971)
++.+++.++.. +.....|++|.++.+ ...|.|.|
T Consensus 81 ~~~~~l~~l~~---~~~~~~~~~L~~~g~----~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEP---EETTELTLPLDGQGG----GKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCC---CCcEEEEEECcCCCC----ccCceEEc
Confidence 99999999854 234689999997654 34566643
No 75
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.51 E-value=8.5e-14 Score=139.44 Aligned_cols=96 Identities=40% Similarity=0.689 Sum_probs=84.1
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----------------------------EEEeeeccCCCCCeeccE
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----------------------------RFKTKVVRKSLSPSWEEE 51 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~-----------------------------~~rTkvi~~t~nP~WnE~ 51 (971)
|.|.|+|++|+||+++|.+|.+||||++.++.. .++|+++.+++||.|||+
T Consensus 28 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~ 107 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNET 107 (153)
T ss_pred EEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccE
Confidence 479999999999999999999999999998531 378999999999999999
Q ss_pred EEEEEeCC-CCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCCcEEEEc
Q 002081 52 FSFKVEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (971)
Q Consensus 52 F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L 104 (971)
|.|.+..+ ...|.|+|||++ +++||++.+++.++.. ...+.||+|
T Consensus 108 F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~----~~~d~W~~L 153 (153)
T cd08676 108 FRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS----CGLDSWFKL 153 (153)
T ss_pred EEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC----CCCCCeEeC
Confidence 99999654 578999999997 7899999999999962 135899987
No 76
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.50 E-value=7.1e-15 Score=160.89 Aligned_cols=103 Identities=39% Similarity=0.648 Sum_probs=92.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEE--eCCCCeEEEEEEeCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV--EDLKDELVISVLDEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v--~~~~~~L~V~V~D~d~~~ 74 (971)
.|+|+|.+|+||.++|.||.+||||++.+- ..+++|++++.++||+|||+|.|.+ .+.++.|.|+|||+|.-+
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 589999999999999999999999999993 3468999999999999999999999 445688999999999999
Q ss_pred CCceeEEEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
+++|+|...+.+++|... ..+.||.|.+..
T Consensus 261 RNDFMGslSFgisEl~K~----p~~GWyKlLsqe 290 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKA----PVDGWYKLLSQE 290 (683)
T ss_pred cccccceecccHHHHhhc----chhhHHHHhhhh
Confidence 999999999999999653 368999998643
No 77
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.50 E-value=1.3e-13 Score=139.97 Aligned_cols=102 Identities=31% Similarity=0.507 Sum_probs=87.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEe---C-CCCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVE---D-LKDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v~---~-~~~~L~V~V~D~d~ 72 (971)
+|.|+|++|+||++.+..+.+||||++.+. ..+++|++++++.||.|||+|.|.+. + ....|.|+|||++.
T Consensus 28 ~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~ 107 (162)
T cd04020 28 ELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK 107 (162)
T ss_pred eEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC
Confidence 599999999999999989999999999883 35689999999999999999999862 2 23579999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
++++++||++.+++..+.... ..+.|+.|.+
T Consensus 108 ~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~~ 138 (162)
T cd04020 108 LSSNDFLGGVRLGLGTGKSYG---QAVDWMDSTG 138 (162)
T ss_pred CCCCceEEEEEEeCCccccCC---CccccccCCh
Confidence 889999999999999985422 3578888864
No 78
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.49 E-value=1.2e-13 Score=134.15 Aligned_cols=88 Identities=26% Similarity=0.416 Sum_probs=79.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEe--CCCCeEEEEEEeCCCCCCCcee
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVISVLDEDKYFNDDFV 79 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~--~~~~~L~V~V~D~d~~~~d~~L 79 (971)
+|+|+|++|++|+. +..+.+||||+|.+++++++|++++++.||+|||+|.|... .....|.|+|||++.+++|++|
T Consensus 29 ~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~I 107 (127)
T cd04032 29 TLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLL 107 (127)
T ss_pred EEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCee
Confidence 69999999999984 66788999999999999999999999999999999999853 3468999999999999999999
Q ss_pred EEEEEeCcccc
Q 002081 80 GFLKIPVSRVF 90 (971)
Q Consensus 80 G~v~I~l~~l~ 90 (971)
|++.+++....
T Consensus 108 G~~~i~l~~~~ 118 (127)
T cd04032 108 GTCSVVPEAGV 118 (127)
T ss_pred EEEEEEecCCc
Confidence 99999998763
No 79
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.49 E-value=5.3e-14 Score=137.92 Aligned_cols=102 Identities=34% Similarity=0.589 Sum_probs=87.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~~ 73 (971)
+|.|+|++|+||++.+..|.+||||++.+.+ .+++|+++.++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~ 93 (133)
T cd08384 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIG 93 (133)
T ss_pred EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCC
Confidence 7999999999999999999999999999852 358999999999999999999998432 46899999999988
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
+++++||++.+++... +.....|+++....
T Consensus 94 ~~~~~lG~~~i~l~~~-----~~~~~~W~~~l~~~ 123 (133)
T cd08384 94 KSNDYIGGLQLGINAK-----GERLRHWLDCLKNP 123 (133)
T ss_pred CCccEEEEEEEecCCC-----CchHHHHHHHHhCC
Confidence 8999999999999752 22357899887543
No 80
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.49 E-value=4.2e-14 Score=139.24 Aligned_cols=101 Identities=24% Similarity=0.322 Sum_probs=84.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~ 73 (971)
+|.|+|++|+||++.+..|.+||||++.+.+ .+.+|+++++++||+|||+|.|.++. ....|.|+|||+|.+
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~ 95 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTED 95 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCC
Confidence 6999999999999999899999999999942 25789999999999999999999943 357899999999999
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEcccC
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~ 107 (971)
+++++||++.++.... +.....|..+...
T Consensus 96 ~~~~~iG~v~lg~~~~-----g~~~~hW~~ml~~ 124 (136)
T cd08406 96 GKTPNVGHVIIGPAAS-----GMGLSHWNQMLAS 124 (136)
T ss_pred CCCCeeEEEEECCCCC-----ChhHHHHHHHHHC
Confidence 9999999999977643 2224567666543
No 81
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.49 E-value=5.9e-14 Score=138.27 Aligned_cols=103 Identities=29% Similarity=0.479 Sum_probs=87.7
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCC
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (971)
++|.|+|++|+||++.+.+|.+||||++.+.. .+.+|++++++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 57999999999999999999999999999842 25789999999999999999999843 34679999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
++++++||++.+++... ......|++|....
T Consensus 95 ~~~~~~iG~~~~~~~~~-----~~~~~~w~~l~~~~ 125 (136)
T cd08404 95 VTKNEVIGRLVLGPKAS-----GSGGHHWKEVCNPP 125 (136)
T ss_pred CCCCccEEEEEECCcCC-----CchHHHHHHHHhCC
Confidence 99999999999999872 12367898887543
No 82
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.48 E-value=7.8e-15 Score=160.61 Aligned_cols=100 Identities=24% Similarity=0.412 Sum_probs=84.7
Q ss_pred hcCCCC-------ceeeecCceEEEEEEEeecCCccCCCCCCCCCeEEEEe-----CCeeeeeecccccCCCCCc-----
Q 002081 523 QKGSDH-------GVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC-----NGKSRTSSIKFQQCDPMWN----- 585 (971)
Q Consensus 523 ~~g~d~-------~~~~~~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~-----~~~~~~s~v~~~~~np~wn----- 585 (971)
--|.|| ++.|+.++..|+|++.+|+||+|||++|+|||||++++ +.-|+||+.++.||||+||
T Consensus 159 lCG~DhtE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf 238 (683)
T KOG0696|consen 159 LCGTDHTERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTF 238 (683)
T ss_pred ccCCcchhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEE
Confidence 457888 88999999999999999999999999999999999994 2233345555899999999
Q ss_pred ---------------------------------------ccceEEEEcCcccccccccceeEEEEecCCCCccchhhhh
Q 002081 586 ---------------------------------------DLADVWIPLQGKLAQACQSKLHLRIFLNNTKGSNVVKEYL 625 (971)
Q Consensus 586 ---------------------------------------~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~~~~~~vr~~l 625 (971)
+.+++|++| |+|.+++++|++|....+.+.+.+|+.+
T Consensus 239 ~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKl---LsqeEGEyyNvp~~~~~~e~~~~lr~k~ 314 (683)
T KOG0696|consen 239 KLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKL---LSQEEGEYYNVPVPDEDSEDNEELRQKF 314 (683)
T ss_pred ecccccccceeEEEEecccccccccccceecccHHHHhhcchhhHHHH---hhhhcCceeccCCCCchhhHHHHHHHHH
Confidence 789999999 9999999999999877766666666554
No 83
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.46 E-value=3.5e-13 Score=131.74 Aligned_cols=102 Identities=40% Similarity=0.658 Sum_probs=90.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC--CCCeEEEEEEeCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v~~--~~~~L~V~V~D~d~~~ 74 (971)
+|+|+|++|+||+..+..+.+||||++.+. ...++|+++.++.+|.|||+|.|.+.. ....|.|+|||++.++
T Consensus 14 ~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~ 93 (131)
T cd04026 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTT 93 (131)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCC
Confidence 689999999999999888899999999995 357999999999999999999999843 3578999999999888
Q ss_pred CCceeEEEEEeCccccccCCCCCCcEEEEcccC
Q 002081 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~ 107 (971)
++++||++.+++.++... ....||+|.+.
T Consensus 94 ~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~ 122 (131)
T cd04026 94 RNDFMGSLSFGVSELIKM----PVDGWYKLLNQ 122 (131)
T ss_pred CcceeEEEEEeHHHhCcC----ccCceEECcCc
Confidence 999999999999998642 46899999854
No 84
>PLN03008 Phospholipase D delta
Probab=99.46 E-value=4.7e-13 Score=160.67 Aligned_cols=107 Identities=24% Similarity=0.415 Sum_probs=92.6
Q ss_pred CCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCC
Q 002081 20 GYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLP 98 (971)
Q Consensus 20 g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~ 98 (971)
+++||||+|.++++ ..||+++.++.||+|||+|.|.+.++...|.|+|||+|.++ +++||++.||+.++..+ ...
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G---e~v 150 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG---ERI 150 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCC---Cce
Confidence 46799999999876 46999999999999999999999877889999999999986 58999999999998653 346
Q ss_pred cEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 002081 99 TAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (971)
Q Consensus 99 ~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~~~ 131 (971)
+.|++|....+++ .+..|+|+|+++|.+...+
T Consensus 151 d~Wl~Ll~~~~kp-~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 151 SGWFPVLGASGKP-PKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred EEEEEccccCCCC-CCCCcEEEEEEEEEEcccc
Confidence 8999999877654 3667999999999987554
No 85
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.45 E-value=5e-13 Score=129.67 Aligned_cols=88 Identities=32% Similarity=0.523 Sum_probs=79.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--EEeeeccCCCCCeeccEEEEEEeC-CCCeEEEEEEeCCCCCCCcee
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFV 79 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~--~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~L 79 (971)
|+|+|++|++|++.+..|.+||||++.+++.. .+|++++++.||.|||+|.|.+.. ....|.|+|||++.++++++|
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~i 81 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLI 81 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCcee
Confidence 78999999999999999999999999998765 678888999999999999999843 357899999999998899999
Q ss_pred EEEEEeCcccc
Q 002081 80 GFLKIPVSRVF 90 (971)
Q Consensus 80 G~v~I~l~~l~ 90 (971)
|++.+++.+..
T Consensus 82 G~~~i~l~~~~ 92 (124)
T cd04037 82 GETVIDLEDRF 92 (124)
T ss_pred EEEEEeecccc
Confidence 99999998764
No 86
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.45 E-value=4.7e-13 Score=131.94 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=76.4
Q ss_pred EEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCC
Q 002081 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~--~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d 71 (971)
+|.|.|++|+||++++. .+.+||||++.+.. .+++|++++++.||+|||.|.|.++. ....|.|+|||+|
T Consensus 16 ~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 16 RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 69999999999999983 35599999999853 25789999999999999999999943 2478999999999
Q ss_pred CCCCCceeEEEEEeCcc
Q 002081 72 KYFNDDFVGFLKIPVSR 88 (971)
Q Consensus 72 ~~~~d~~LG~v~I~l~~ 88 (971)
.++++++||++.+++..
T Consensus 96 ~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 96 SPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCcCcceeceEEecCcC
Confidence 99999999999999865
No 87
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.45 E-value=5.4e-13 Score=131.38 Aligned_cols=102 Identities=32% Similarity=0.538 Sum_probs=85.1
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeeccCCCCCeeccEEEEEEeCC---CCeEEEEEEeCCC
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG--R---QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~--~---~~~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~ 72 (971)
.+|.|+|++|+||+.++.+|.+||||++.++ + .+++|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 94 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR 94 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 3699999999999999999999999999984 2 357899999999999999999998432 3579999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEcccC
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~ 107 (971)
++++++||++.+++... +.....|+++...
T Consensus 95 ~~~~~~iG~~~i~~~~~-----~~~~~~W~~~~~~ 124 (136)
T cd08402 95 IGKNDPIGKVVLGCNAT-----GAELRHWSDMLAS 124 (136)
T ss_pred CCCCceeEEEEECCccC-----ChHHHHHHHHHhC
Confidence 99999999999999764 1224667776643
No 88
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.45 E-value=7.3e-13 Score=125.90 Aligned_cols=100 Identities=27% Similarity=0.516 Sum_probs=85.6
Q ss_pred CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCC-CCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCC
Q 002081 18 QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (971)
Q Consensus 18 ~~g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~ 95 (971)
.+|.+||||++.++++ ..+|+++.++.||.|||.|.|.+.+. ...|.|.|||++.+ ++++||++.++|.++... .
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~--~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDA--T 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhh--h
Confidence 4788999999999875 57999999999999999999999654 57799999999998 899999999999998642 2
Q ss_pred CCCcEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 002081 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (971)
Q Consensus 96 ~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~ 127 (971)
.....||+|.+ ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~-------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG-------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC-------CCCCEEEEEEEEec
Confidence 23689999985 23699999999976
No 89
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.44 E-value=6.9e-13 Score=130.65 Aligned_cols=103 Identities=32% Similarity=0.579 Sum_probs=85.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeeccCCCCCeeccEEEEEEe--CC-CCeEEEEEEeCCC
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG--R---QRFKTKVVRKSLSPSWEEEFSFKVE--DL-KDELVISVLDEDK 72 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~--~---~~~rTkvi~~t~nP~WnE~F~F~v~--~~-~~~L~V~V~D~d~ 72 (971)
.+|.|+|++|+||++.+..|.+||||++.+. + .+++|++++++.||.|||+|.|.+. +. ...|.|+|||++.
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~ 94 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC
Confidence 3799999999999999989999999999983 2 3578999999999999999999984 22 4689999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
++++++||++.+++... +.....|+++....
T Consensus 95 ~~~~~~lG~~~i~~~~~-----~~~~~~w~~~~~~~ 125 (136)
T cd08405 95 LSRNDLIGKIYLGWKSG-----GLELKHWKDMLSKP 125 (136)
T ss_pred CCCCcEeEEEEECCccC-----CchHHHHHHHHhCC
Confidence 99999999999999875 12245666665443
No 90
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.43 E-value=7.1e-13 Score=131.01 Aligned_cols=101 Identities=25% Similarity=0.442 Sum_probs=84.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR------QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~------~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (971)
+|.|+|++|+||++.+..|.+||||++.+.. .+++|++++++.||+|||+|.|+++. ....|.|+|||.+.
T Consensus 16 ~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~ 95 (138)
T cd08408 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC
Confidence 6999999999999999999999999999842 25799999999999999999999943 34689999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
++++++||++.+++...-. .....|+.+..
T Consensus 96 ~~~~~~iG~v~l~~~~~~~----~~~~hW~~~l~ 125 (138)
T cd08408 96 MKRKEMIGWFSLGLNSSGE----EEEEHWNEMKE 125 (138)
T ss_pred CCCCcEEEEEEECCcCCCc----hHHHHHHHHHh
Confidence 9999999999998875421 11356777754
No 91
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.42 E-value=3.4e-13 Score=132.81 Aligned_cols=103 Identities=30% Similarity=0.458 Sum_probs=84.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeeccCCCCCeeccEEEEEEeC--C-CCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG--R---QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~--~---~~~rTkvi~~t~nP~WnE~F~F~v~~--~-~~~L~V~V~D~d~~ 73 (971)
+|.|+|++|+||+..+.+|.+||||++.+. . .+++|++++++.||.|||+|.|.+.. . ...|.|+|||++..
T Consensus 15 ~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~ 94 (135)
T cd08410 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVK 94 (135)
T ss_pred eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 689999999999999999999999999983 2 35799999999999999999999832 2 34799999999998
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
+++++||++.|...... .....+|+.|....
T Consensus 95 ~~~~~iG~~~l~~~~~~----~~~~~~W~~l~~~~ 125 (135)
T cd08410 95 SSNDFIGRIVIGQYSSG----PSETNHWRRMLNSQ 125 (135)
T ss_pred CCCcEEEEEEEcCccCC----chHHHHHHHHHhCC
Confidence 99999999987654431 11247788887654
No 92
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.42 E-value=7.9e-13 Score=127.36 Aligned_cols=97 Identities=22% Similarity=0.301 Sum_probs=83.8
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeeccCCCCCeeccEEEEEE-eCCCCeEEEEEEeCCC----C
Q 002081 6 RVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDK----Y 73 (971)
Q Consensus 6 ~Vi~ArnL~~~d~~g~sDPYv~v~l~~~-------~~rTkvi~~t~nP~WnE~F~F~v-~~~~~~L~V~V~D~d~----~ 73 (971)
-.++|++|++.+..|.+||||++.+.+. .++|++++++.||.|||+|.|.+ .+....|.++|||++. +
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3589999999999999999999999654 48999999999999999999987 3445789999999997 7
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEcc
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~ 105 (971)
+++++||++.+++.++...+ ....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~---~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSP---GQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCC---CcEEEEEcc
Confidence 89999999999999997533 356788884
No 93
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.42 E-value=1.2e-12 Score=127.79 Aligned_cols=88 Identities=19% Similarity=0.326 Sum_probs=75.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCC-CCeeccEEEEEEeC--CCCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSL-SPSWEEEFSFKVED--LKDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-----~~~~rTkvi~~t~-nP~WnE~F~F~v~~--~~~~L~V~V~D~d~~ 73 (971)
+|+|.|++|+||++....+..||||+|.+- -.+++|+++++++ +|+|||+|.|+++. ....|.|+|||++..
T Consensus 15 rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~ 94 (135)
T cd08692 15 RIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSV 94 (135)
T ss_pred eEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCC
Confidence 699999999999998667778999999983 1468999999995 69999999999943 245788999999988
Q ss_pred CCCceeEEEEEeCccc
Q 002081 74 FNDDFVGFLKIPVSRV 89 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l 89 (971)
+++++||++.++....
T Consensus 95 ~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 95 RRKHFLGQVWISSDSS 110 (135)
T ss_pred cCCceEEEEEECCccC
Confidence 8999999999998764
No 94
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.41 E-value=1.6e-12 Score=127.67 Aligned_cols=103 Identities=29% Similarity=0.550 Sum_probs=84.8
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--C-CCeEEEEEEeCCC
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDK 72 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~--~-~~~L~V~V~D~d~ 72 (971)
++|+|+|++|++|++++..|.+||||++.+.. ..++|+++.++.||.|||+|.|.+.. . ...|.|+|||++.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 47999999999999999999999999999842 35789999999999999999999832 2 2469999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
++++++||++.+++... +.....|+++....
T Consensus 94 ~~~~~~IG~~~l~~~~~-----~~~~~~w~~~~~~~ 124 (134)
T cd08403 94 VGHNELIGVCRVGPNAD-----GQGREHWNEMLANP 124 (134)
T ss_pred CCCCceeEEEEECCCCC-----CchHHHHHHHHHCC
Confidence 99999999999998632 12246777776443
No 95
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.40 E-value=4.4e-13 Score=131.16 Aligned_cols=102 Identities=32% Similarity=0.552 Sum_probs=88.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~~ 73 (971)
+|.|+|++|+||+..+..+.+||||++.+.+ .+++|+++.++.||.|||+|.|.+... ...|.|+|||.+.+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~ 94 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV 94 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC
Confidence 6999999999999998888999999999854 257999999999999999999999543 47899999999988
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEcccCC
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~ 108 (971)
+++++||++.+++.+ . +...+.|++|....
T Consensus 95 ~~~~~lG~~~i~l~~--~---~~~~~~W~~l~~~~ 124 (134)
T cd00276 95 GRNEVIGQVVLGPDS--G---GEELEHWNEMLASP 124 (134)
T ss_pred CCCceeEEEEECCCC--C---CcHHHHHHHHHhCC
Confidence 899999999999988 2 22368899998654
No 96
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.37 E-value=9.8e-13 Score=129.89 Aligned_cols=101 Identities=28% Similarity=0.409 Sum_probs=82.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--C-CCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~--~-~~~L~V~V~D~d~~ 73 (971)
+|.|+|++|+||++.+ .+.+||||++.+.. .+++|++++++.||+|||+|.|.++. . ...|.|+|||.+..
T Consensus 16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence 6999999999999998 78899999999853 35799999999999999999999932 2 36899999999988
Q ss_pred CCCceeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
+++++||++.++...... +.....|..+..
T Consensus 95 ~~~~~lG~v~ig~~~~~~---~~~~~hW~~~~~ 124 (137)
T cd08409 95 RKSKLLGRVVLGPFMYAR---GKELEHWNDMLS 124 (137)
T ss_pred CCcceEEEEEECCcccCC---ChHHHHHHHHHh
Confidence 999999999998654422 122456666654
No 97
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.36 E-value=5.4e-12 Score=121.98 Aligned_cols=89 Identities=36% Similarity=0.671 Sum_probs=78.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEE-eC---CCCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-ED---LKDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v-~~---~~~~L~V~V~D~d~ 72 (971)
+|.|+|++|++|++.+..+.+||||++.+. ....+|+++.++.||.|||.|.|.. .. ....|.|+|||++.
T Consensus 16 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC
Confidence 699999999999999888899999999983 2468999999999999999999964 22 24689999999998
Q ss_pred CCCCceeEEEEEeCccccc
Q 002081 73 YFNDDFVGFLKIPVSRVFD 91 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~ 91 (971)
+ ++++||++.+++.++..
T Consensus 96 ~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 96 F-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred c-CCeeEEEEEEEcccCCC
Confidence 7 88999999999999864
No 98
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.34 E-value=5.7e-10 Score=136.19 Aligned_cols=121 Identities=21% Similarity=0.390 Sum_probs=101.1
Q ss_pred EEEEEEEeeCCCCCC--CCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCcee
Q 002081 3 LVVRVIEARNIPAMD--QNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFV 79 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d--~~g~sDPYv~v~l~~-~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~L 79 (971)
|.|+|.+|++|...+ .++..|||+.++..+ ...+|+++.++.||+|||+|++.+....+.|.++|||.+.+.+|..+
T Consensus 438 v~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vv 517 (1227)
T COG5038 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVV 517 (1227)
T ss_pred EEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccCCccee
Confidence 789999999999888 588999999999754 34799999999999999999999988899999999998888999999
Q ss_pred EEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEecCC
Q 002081 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (971)
Q Consensus 80 G~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~~ 130 (971)
|.+.++|..|...+ .....-+.+... .+..|+|...+.|.+...
T Consensus 518 G~~~l~L~~L~~~~--~~~ne~~e~~~~-----~k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 518 GSTQLDLALLHQNP--VKKNELYEFLRN-----TKNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred eeEEechHHhhhcc--ccccceeeeecc-----CccceEEEEeeeeecccC
Confidence 99999998886532 233444555433 245799999999998743
No 99
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.1e-12 Score=146.35 Aligned_cols=120 Identities=33% Similarity=0.569 Sum_probs=106.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCC--------
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~-------- 73 (971)
+++++|+.|.+|.++|..|.+||||.+++++.++||+++...+||+|||.|+|...+....|.|.|||+|.-
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqk 375 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQK 375 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999998889999999999852
Q ss_pred ---CCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 74 ---~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
..|+|||+..|.+..+.. ..+.||.|..+..+ ..+.|.|+|.|...-.
T Consensus 376 l~resddflgqtvievrtlsg-----emdvwynlekrtdk--savsgairlhisveik 426 (1283)
T KOG1011|consen 376 LTRESDDFLGQTVIEVRTLSG-----EMDVWYNLEKRTDK--SAVSGAIRLHISVEIK 426 (1283)
T ss_pred hhhcccccccceeEEEEeccc-----chhhhcchhhccch--hhccceEEEEEEEEEc
Confidence 468999999999888732 36899999988766 4578998888877654
No 100
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.33 E-value=6.5e-12 Score=119.42 Aligned_cols=80 Identities=28% Similarity=0.418 Sum_probs=69.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeC-------
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE------- 70 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~------- 70 (971)
|.|+|.+|+||+ +.+||||++.++. ...+|+++.+++||+|||+|.|.+. ....|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEcccccccc
Confidence 689999999995 4699999999863 3599999999999999999999996 477999999998
Q ss_pred CCCCCCceeEEEEEeCcc
Q 002081 71 DKYFNDDFVGFLKIPVSR 88 (971)
Q Consensus 71 d~~~~d~~LG~v~I~l~~ 88 (971)
|..+.|+++|.+.+.+..
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 466789999998888754
No 101
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.32 E-value=5.3e-12 Score=146.16 Aligned_cols=123 Identities=28% Similarity=0.452 Sum_probs=110.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (971)
.|+|.|.+|+||++.+..|.+||||.|.++.+ ..||.++.+++.|.|.|+|+|.++..-..|.+.|||+| +++|+.||
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IG 84 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIG 84 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccc
Confidence 48999999999999999999999999999976 59999999999999999999999887899999999999 79999999
Q ss_pred EEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEecCC
Q 002081 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~~ 130 (971)
.+.|.-.+|.. ....+.|+.|++.+.. ..++|+|+|++.+.....
T Consensus 85 Kvai~re~l~~---~~~~d~W~~L~~VD~d--sEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 85 KVAIKREDLHM---YPGKDTWFSLQPVDPD--SEVQGKVHLELALTEAIQ 129 (800)
T ss_pred eeeeeHHHHhh---CCCCccceeccccCCC--hhhceeEEEEEEeccccC
Confidence 99999888854 2357899999988755 468999999999986644
No 102
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.29 E-value=6.8e-12 Score=163.46 Aligned_cols=115 Identities=26% Similarity=0.443 Sum_probs=97.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCC--CeEEEEEEeCCCCCCCce
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLK--DELVISVLDEDKYFNDDF 78 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~~~--~~L~V~V~D~d~~~~d~~ 78 (971)
.|+|+|++|+||. +..|.+||||++.++++ +.+|++++++.||.|||+|.|.+.+++ ..|+++|||+|.|++| .
T Consensus 1981 ~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd-~ 2057 (2102)
T PLN03200 1981 SLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS-S 2057 (2102)
T ss_pred ceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC-C
Confidence 5899999999998 55789999999999965 789999999999999999999986655 7799999999998555 9
Q ss_pred eEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceE---EEEEEEEEe
Q 002081 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGE---ILLTISFSH 127 (971)
Q Consensus 79 LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~---I~L~i~~~~ 127 (971)
+|++.|++.++..+. ....||+|.++.++ .|+ |++.+.|.+
T Consensus 2058 ~G~~~i~l~~vv~~~---~~~~~~~L~~~~~k-----~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2058 LGKVTIQIDRVVMEG---TYSGEYSLNPESNK-----DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CceEEEEHHHHhcCc---eeeeeeecCccccc-----CCCcceEEEEEEecC
Confidence 999999999997532 46889999965322 466 999988864
No 103
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.28 E-value=1.5e-11 Score=116.36 Aligned_cols=86 Identities=22% Similarity=0.487 Sum_probs=75.2
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEECCe------EEEeeeccCCCCCeeccEEEEEEe-----CCCCeEEEEEEeCCC
Q 002081 4 VVRVIEARNIPAMDQNGYSDPYVRLQLGRQ------RFKTKVVRKSLSPSWEEEFSFKVE-----DLKDELVISVLDEDK 72 (971)
Q Consensus 4 ~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~------~~rTkvi~~t~nP~WnE~F~F~v~-----~~~~~L~V~V~D~d~ 72 (971)
-+-.++|++|+..+..|.+||||++.+.+. .++|+++++++||.|| +|.|.+. +....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 355679999999999999999999998542 4899999999999999 7888762 235799999999999
Q ss_pred CCCCceeEEEEEeCcccc
Q 002081 73 YFNDDFVGFLKIPVSRVF 90 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~ 90 (971)
++++++||++.+++.++.
T Consensus 82 ~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 SGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCcEEEEEEEEHHHHh
Confidence 999999999999999996
No 104
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.26 E-value=2.4e-11 Score=108.13 Aligned_cols=81 Identities=40% Similarity=0.741 Sum_probs=73.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEE-eCCCCeEEEEEEeCCCCCCCce
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDKYFNDDF 78 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~---~~~rTkvi~~t~nP~WnE~F~F~v-~~~~~~L~V~V~D~d~~~~d~~ 78 (971)
|+|+|++|+||+..+..+.+||||++.+++ ...+|+++.++.+|.|||+|.|.+ ......|.|+|||.+..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999976 679999999999999999999998 3444669999999999888999
Q ss_pred eEEEE
Q 002081 79 VGFLK 83 (971)
Q Consensus 79 LG~v~ 83 (971)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 105
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.19 E-value=3.5e-11 Score=119.32 Aligned_cols=73 Identities=26% Similarity=0.457 Sum_probs=60.9
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCCC
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNTK 616 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~~ 616 (971)
-+|+|.|+.|+||+.+|..++||||||++|++|+.+|+++.+++||+|||.+.+-+ ......|.+.|++.++-
T Consensus 6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v-------~d~~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTV-------KDPNTPLKVTVYDKDTF 78 (168)
T ss_pred eEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEe-------cCCCceEEEEEEeCCCC
Confidence 37999999999999999889999999999999999999999999999998754432 22334477888876653
No 106
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.10 E-value=6.5e-10 Score=100.60 Aligned_cols=100 Identities=50% Similarity=0.865 Sum_probs=86.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeC-CCCeEEEEEEeCCCCCCCceeE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-~~~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~LG 80 (971)
|.|+|++|++|......+.+||||.+.+.. ...+|+++.++.||.|||.|.|.+.. ....|.++||+.+....+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 579999999998877777899999999987 88999999999999999999999966 6788999999999877789999
Q ss_pred EEEEeCccccccCCCCCCcEEEEc
Q 002081 81 FLKIPVSRVFDADNKSLPTAWHSL 104 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~~W~~L 104 (971)
.+.+++..+.. .......|++|
T Consensus 81 ~~~~~l~~l~~--~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLD--SGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhh--cCCcCcceecC
Confidence 99999999861 12345678765
No 107
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.07 E-value=3.5e-10 Score=113.42 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=45.3
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccc-cCCCCCcc
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWND 586 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~-~~np~wn~ 586 (971)
.|+|+|++|+||.++|.+|.+||||++.+++++.+|.++.+ |+||+|||
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE 50 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNE 50 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccC
Confidence 38999999999999999999999999999999999998766 69999993
No 108
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.05 E-value=1.5e-09 Score=98.91 Aligned_cols=90 Identities=44% Similarity=0.790 Sum_probs=80.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EEEeeeccCCCCCeeccEEEEEEeCC-CCeEEEEEEeCCCCCCCc
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ---RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDD 77 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~---~~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~ 77 (971)
+|.|+|++|++|......+..+|||++.+... ..+|+++.++.||.|||+|.|.+..+ ...|.|+|||.+....+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 47899999999998876678999999999865 79999999999999999999999666 789999999999877789
Q ss_pred eeEEEEEeCccccc
Q 002081 78 FVGFLKIPVSRVFD 91 (971)
Q Consensus 78 ~LG~v~I~l~~l~~ 91 (971)
++|.+.+++.++..
T Consensus 81 ~~G~~~~~l~~~~~ 94 (101)
T smart00239 81 FIGQVTIPLSDLLL 94 (101)
T ss_pred eeEEEEEEHHHccc
Confidence 99999999888754
No 109
>PLN02223 phosphoinositide phospholipase C
Probab=99.03 E-value=2.4e-09 Score=124.71 Aligned_cols=116 Identities=22% Similarity=0.316 Sum_probs=92.8
Q ss_pred EEEEEEEEeeCCCCC-----CCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCC-CeEEEEEEeC
Q 002081 2 KLVVRVIEARNIPAM-----DQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~-----d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D~ 70 (971)
+|+|+|+.|.+++.. +.....||||+|.+.+ .+++|++..++.||+|||+|.|.+..++ ..|+|+|+|+
T Consensus 410 ~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~ 489 (537)
T PLN02223 410 ILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDY 489 (537)
T ss_pred EEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEec
Confidence 689999999997521 2235689999999943 3567888778899999999999996666 5789999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 71 d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
|....++|+|+..+|+..+.. +.++++|.++.+..- ..-.|.+++.+
T Consensus 490 D~~~~ddfiGQ~~LPv~~Lr~------GyR~VpL~~~~g~~l--~~~~Ll~~f~~ 536 (537)
T PLN02223 490 EVSTADAFCGQTCLPVSELIE------GIRAVPLYDERGKAC--SSTMLLTRFKW 536 (537)
T ss_pred CCCCCCcEEEEEecchHHhcC------CceeEeccCCCcCCC--CCceEEEEEEe
Confidence 988889999999999999844 678899998776532 34577777765
No 110
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.99 E-value=8.8e-10 Score=107.10 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=59.8
Q ss_pred EEEEEEEeecC---CccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDN---LAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~---l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
.|.|+|++|+| |..+|..|.+||||++++++++.+|+++..++||+|||.+.+-+.- . ...|.+.|+..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~---~----~~~l~v~V~d~d 73 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD---P----CTVLTVGVFDNS 73 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC---C----CCEEEEEEEECC
Confidence 38999999999 8999999999999999999999999999999999999987664421 1 125888888655
Q ss_pred C
Q 002081 615 T 615 (971)
Q Consensus 615 ~ 615 (971)
.
T Consensus 74 ~ 74 (126)
T cd08379 74 Q 74 (126)
T ss_pred C
Confidence 3
No 111
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.98 E-value=1.4e-09 Score=102.34 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=60.1
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
+|.|+|++|+||...|.+|.+||||++++++++++|+++.+|+||.|||.+.+=+.- .....+.+.|+..+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~------~~~~~l~v~v~d~~ 71 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRN------PENQELEIEVKDDK 71 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCC------CCCCEEEEEEEECC
Confidence 489999999999999999999999999999999999999999999999987665532 11235778887654
No 112
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=98.98 E-value=1.3e-09 Score=105.93 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=60.5
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
++|+|++|+||.++|.+|.+||||++.+++++++|+++.+++||+|||.+.+=++-.. ..+.....|.+.|+..+.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~-~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLL-SGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcc-cCCCcCCEEEEEEEEccc
Confidence 5799999999999999999999999999999999999999999999998766443311 012233457888876553
No 113
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=98.95 E-value=1.9e-09 Score=103.99 Aligned_cols=69 Identities=14% Similarity=0.309 Sum_probs=55.1
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccc-cCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~-~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
.|.|+|++|++|...+ .|.|||||++++++++.+|++..+ ++||.|||.+.+=+.- . ...+.+.|+..+
T Consensus 3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~------~-~~~l~~~V~d~d 72 (121)
T cd04016 3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPE------G-VDSIYIEIFDER 72 (121)
T ss_pred EEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecC------C-CcEEEEEEEeCC
Confidence 6999999999988877 899999999999999999998765 8999999887664321 1 134777777544
No 114
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=98.95 E-value=1.9e-09 Score=102.92 Aligned_cols=71 Identities=24% Similarity=0.495 Sum_probs=58.4
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
+|+|+|++|+||.+.|.+|.+||||++.+++++.+|+++.+|+||.|||.+.+-+.- .....+.+.++..+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~------~~~~~l~v~v~d~~ 71 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFD------DQSQILEIEVWDKD 71 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecC------CCCCEEEEEEEECC
Confidence 489999999999999999999999999999999999999999999999876654332 11234667776544
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.95 E-value=2.3e-10 Score=132.17 Aligned_cols=120 Identities=32% Similarity=0.628 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------e--EEEeeeccCCCCCeeccE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----------------------------Q--RFKTKVVRKSLSPSWEEE 51 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----------------------------~--~~rTkvi~~t~nP~WnE~ 51 (971)
|.|.+.+|+||.+++.+|.+|||+...+-. . .+-|+|+++|+||+|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 345677899999999999999999987620 0 145788899999999999
Q ss_pred EEEEEeCC-CCeEEEEEEeCCC---------------------------------CC---CCceeEEEEEeCccccccCC
Q 002081 52 FSFKVEDL-KDELVISVLDEDK---------------------------------YF---NDDFVGFLKIPVSRVFDADN 94 (971)
Q Consensus 52 F~F~v~~~-~~~L~V~V~D~d~---------------------------------~~---~d~~LG~v~I~l~~l~~~~~ 94 (971)
|.|.+.+. ...+++.+||+|. .+ .|||||.+.||+.++...
T Consensus 196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-- 273 (1103)
T KOG1328|consen 196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-- 273 (1103)
T ss_pred eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc--
Confidence 99999765 4789999999985 12 378999999999998432
Q ss_pred CCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 95 KSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 95 ~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
..++||+|++++.+ .+++|.++|.++++..
T Consensus 274 --Gld~WFkLepRS~~--S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 274 --GLDQWFKLEPRSDK--SKVQGQVKLKLWLSTK 303 (1103)
T ss_pred --hHHHHhccCccccc--ccccceEEEEEEEeee
Confidence 36899999999876 4689999999999875
No 116
>PLN02952 phosphoinositide phospholipase C
Probab=98.93 E-value=1.1e-08 Score=121.73 Aligned_cols=116 Identities=26% Similarity=0.301 Sum_probs=91.0
Q ss_pred EEEEEEEEeeCCCCCC------CCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCCC-CeEEEEEEe
Q 002081 2 KLVVRVIEARNIPAMD------QNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d------~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D 69 (971)
+|+|+|+.|.+|+... .....||||+|.+- ..+.+|+++.++.||+|||+|.|.+..++ ..|+|.|||
T Consensus 471 ~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D 550 (599)
T PLN02952 471 TLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVRE 550 (599)
T ss_pred eEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEe
Confidence 6899999999875321 12335999999984 35689999999999999999999996554 578999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 70 ~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
+|..+.++|+|+..+|+..|.. +.+|++|.++.+..- ..-.|.+++.|
T Consensus 551 ~D~~~~ddfiGq~~lPv~~Lr~------GyR~VpL~~~~G~~l--~~a~Llv~f~~ 598 (599)
T PLN02952 551 YDMSEKDDFGGQTCLPVSELRP------GIRSVPLHDKKGEKL--KNVRLLMRFIF 598 (599)
T ss_pred cCCCCCCCeEEEEEcchhHhcC------CceeEeCcCCCCCCC--CCEEEEEEEEe
Confidence 9988889999999999999954 567999987766432 23355555544
No 117
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.91 E-value=2.7e-09 Score=103.84 Aligned_cols=72 Identities=18% Similarity=0.383 Sum_probs=58.0
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEec
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLN 613 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~ 613 (971)
|+|+|++|++|.++|.+|.+||||++.+++++++|+++.+++||.|||.+.+=+.- ........|.+.|+..
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~---~~~~~~~~l~~~V~d~ 73 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSD---PSRLSNLVLEVYVYND 73 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccC---HHHccCCeEEEEEeeC
Confidence 89999999999999999999999999999999999999999999999987654322 1111223466777653
No 118
>PLN02270 phospholipase D alpha
Probab=98.90 E-value=1.5e-08 Score=122.61 Aligned_cols=125 Identities=18% Similarity=0.378 Sum_probs=103.9
Q ss_pred EEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECCeE-EEeeeccCC-CCCeeccEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMD------------------QNGYSDPYVRLQLGRQR-FKTKVVRKS-LSPSWEEEFSFKVEDLKD 61 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d------------------~~g~sDPYv~v~l~~~~-~rTkvi~~t-~nP~WnE~F~F~v~~~~~ 61 (971)
+|.|+|++|++|+..+ ..+.+||||.|.+++.+ .||+++.+. .||.|||.|.+++.....
T Consensus 9 ~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~ 88 (808)
T PLN02270 9 TLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMAS 88 (808)
T ss_pred ceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcc
Confidence 5899999999998631 12467999999999876 799999885 699999999999987789
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 002081 62 ELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (971)
Q Consensus 62 ~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~~~ 131 (971)
.+.|+|.|.|.++ ..+||.+.||+.++..++ ..+.||++....+++. +...+|+++++|.+...+
T Consensus 89 ~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~-~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 89 NIIFTVKDDNPIG-ATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPI-HGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred eEEEEEecCCccC-ceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcC-CCCCEEEEEEEEEEcccC
Confidence 9999999999875 569999999999997643 4789999998877643 345699999999986444
No 119
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.88 E-value=9.9e-09 Score=100.27 Aligned_cols=89 Identities=33% Similarity=0.446 Sum_probs=76.4
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCcEEEEEECC---eEEEeeeccCCCC--CeeccEEEEEEeC---------------
Q 002081 3 LVVRVIEARNIPAMD--QNG--YSDPYVRLQLGR---QRFKTKVVRKSLS--PSWEEEFSFKVED--------------- 58 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d--~~g--~sDPYv~v~l~~---~~~rTkvi~~t~n--P~WnE~F~F~v~~--------------- 58 (971)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+++|.|..+++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966544 356 499999999964 5699999999999 9999999998833
Q ss_pred ---------CCCeEEEEEEeCCCCCCCceeEEEEEeCccccc
Q 002081 59 ---------LKDELVISVLDEDKYFNDDFVGFLKIPVSRVFD 91 (971)
Q Consensus 59 ---------~~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~ 91 (971)
.+..|.++|||.|.+++|++||++++++..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 146899999999999999999999999998854
No 120
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.88 E-value=5.7e-09 Score=100.58 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=53.2
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCC-------eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEE
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-------KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIF 611 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-------~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~ 611 (971)
|+|+|++|+||...| .|.+||||++.+.| ++++|+++.+|+||+|||.+.+=++-+..+. ...|++.+.
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~---~~~L~~~V~ 77 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPE---SYELHICVK 77 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCc---eeEEEEEEE
Confidence 899999999999998 59999999999632 3557889899999999998776654321111 122666666
Q ss_pred ec
Q 002081 612 LN 613 (971)
Q Consensus 612 ~~ 613 (971)
..
T Consensus 78 D~ 79 (120)
T cd08395 78 DY 79 (120)
T ss_pred Ee
Confidence 43
No 121
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=98.86 E-value=6.3e-09 Score=100.70 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=60.1
Q ss_pred eeecCceEEEEEEEeecCCccCCCCCCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEE-EcCccccccccc
Q 002081 531 KAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWI-PLQGKLAQACQS 604 (971)
Q Consensus 531 ~~~~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~-~l~~~~~q~~~~ 604 (971)
.++-+.-.|+|+|++|+||.++| +|.+||||++.+. .++++|+++.+++||+|||.+.+=+ +. .+-.+.
T Consensus 7 ~l~y~~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~----~~l~~~ 81 (122)
T cd08381 7 SISYKNGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPV----EDLQQR 81 (122)
T ss_pred EEEEeCCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCCh----HHhCCC
Confidence 33334567999999999999999 9999999999985 4678899999999999999865433 21 122334
Q ss_pred ceeEEEEecC
Q 002081 605 KLHLRIFLNN 614 (971)
Q Consensus 605 ~l~l~i~~~~ 614 (971)
.|++.|...+
T Consensus 82 ~L~~~V~d~d 91 (122)
T cd08381 82 VLQVSVWSHD 91 (122)
T ss_pred EEEEEEEeCC
Confidence 5777777544
No 122
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.85 E-value=2.1e-08 Score=119.13 Aligned_cols=116 Identities=24% Similarity=0.299 Sum_probs=92.9
Q ss_pred EEEEEEEEeeCCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCCC-CeEEEEEEe
Q 002081 2 KLVVRVIEARNIPAM------DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~------d~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D 69 (971)
+|.|+|+.|.+++.. +.....||||+|.+- ..+.+|++..++.||+|||+|.|.+.-++ ..|+|.|+|
T Consensus 470 ~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d 549 (598)
T PLN02230 470 TLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHE 549 (598)
T ss_pred EEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEE
Confidence 699999999987522 223357999999983 34578898888999999999999996665 779999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 70 ~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
+|...+++|+|+..+|+..|.. +.+.++|.++.+..- ..-.|.+++.+
T Consensus 550 ~d~~~~ddfiGQ~~lPv~~Lr~------GyR~V~L~~~~G~~l--~~~~Ll~~f~~ 597 (598)
T PLN02230 550 HDINEKDDFGGQTCLPVSEIRQ------GIHAVPLFNRKGVKY--SSTRLLMRFEF 597 (598)
T ss_pred CCCCCCCCEEEEEEcchHHhhC------ccceEeccCCCcCCC--CCCeeEEEEEe
Confidence 9988899999999999999944 677899998776532 23577777765
No 123
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=98.84 E-value=1.1e-08 Score=100.84 Aligned_cols=73 Identities=21% Similarity=0.397 Sum_probs=61.9
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
-.|+|+|++|++|.+.|..|.+||||++.+++++.+|+++.+++||.|||.+.+.+.- .....+.+.|+..+.
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~------~~~~~l~i~V~D~d~ 87 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKD------LEQDVLCITVFDRDF 87 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecC------ccCCEEEEEEEECCC
Confidence 3699999999999999999999999999999999999999999999999988876632 122357788886553
No 124
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=98.83 E-value=1.3e-08 Score=96.39 Aligned_cols=74 Identities=9% Similarity=0.179 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCccCCCC----CCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEec
Q 002081 538 LLTVALIKGDNLAAVDSS----GFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLN 613 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~----g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~ 613 (971)
+|.|++++|+||.+.|.. +.+||||+|.+++++.||+++.+++||+|||.+.+=+.. ......+.+.|+..
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~-----~~~~~~L~~~V~D~ 76 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP-----HEKNFDIQFKVLDK 76 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeC-----ccCCCEEEEEEEEC
Confidence 689999999999999842 358999999999999999999999999999987553322 11223577788766
Q ss_pred CCC
Q 002081 614 NTK 616 (971)
Q Consensus 614 ~~~ 616 (971)
+..
T Consensus 77 d~~ 79 (108)
T cd04039 77 DKF 79 (108)
T ss_pred CCC
Confidence 543
No 125
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=98.82 E-value=1.2e-08 Score=99.20 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=58.4
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEe
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFL 612 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~ 612 (971)
++|+|+|++|++|...|..|.+||||++.+++++.+|+++.+++||.|||.+.+...- ....+.+.|+.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-------~~~~l~i~V~d 71 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK-------PRSPIKIQVWN 71 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC-------CCCEEEEEEEE
Confidence 6899999999999999999999999999999999999999999999999987654321 13346666664
No 126
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.82 E-value=1.5e-08 Score=99.86 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=62.7
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEE-EEcCcccccc--cccceeEEEEec
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVW-IPLQGKLAQA--CQSKLHLRIFLN 613 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w-~~l~~~~~q~--~~~~l~l~i~~~ 613 (971)
|.|+|.|++|++|.++|..|.+||||++.+++++++|+++.+|+||.|||.+.+= ..+.+...+- ....+.+.|++.
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 4689999999999999999999999999999999999999999999999987664 3453322211 223467777765
Q ss_pred CC
Q 002081 614 NT 615 (971)
Q Consensus 614 ~~ 615 (971)
+.
T Consensus 81 d~ 82 (135)
T cd04017 81 DS 82 (135)
T ss_pred cC
Confidence 53
No 127
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=98.81 E-value=1.7e-08 Score=97.24 Aligned_cols=69 Identities=30% Similarity=0.561 Sum_probs=55.6
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCC-eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
|+|+|++|+||...|.+|.+||||++.+++ +..+|+++.+++||.|||.+.+-+. . + ...+.+.|++.+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~--~-~----~~~l~~~v~D~d 71 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIE--D-V----TQPLYIKVFDYD 71 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEec--C-C----CCeEEEEEEeCC
Confidence 789999999999999999999999999988 5668888899999999987665432 1 1 234777777544
No 128
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.79 E-value=5.7e-08 Score=115.29 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=92.0
Q ss_pred EEEEEEEEeeCCC--CC----CCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCCC-CeEEEEEEe
Q 002081 2 KLVVRVIEARNIP--AM----DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (971)
Q Consensus 2 ~L~V~Vi~ArnL~--~~----d~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D 69 (971)
+|+|+|+.|.+++ .. +.....||||+|.+. ..+.+|+++.++.||+|||+|.|.+..++ ..|+|.|+|
T Consensus 453 ~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d 532 (581)
T PLN02222 453 TLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHE 532 (581)
T ss_pred eEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEE
Confidence 6899999998753 11 123457999999994 34689999999999999999999996655 779999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 70 ~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
+|....++|+|+..+|+..|.. +.+.++|.++.+..- ..-.|.+++.+
T Consensus 533 ~D~~~~ddfigq~~lPv~~Lr~------GyR~V~L~~~~g~~l--~~a~Lfv~~~~ 580 (581)
T PLN02222 533 YDMSEKDDFGGQTCLPVWELSQ------GIRAFPLHSRKGEKY--KSVKLLVKVEF 580 (581)
T ss_pred CCCCCCCcEEEEEEcchhhhhC------ccceEEccCCCcCCC--CCeeEEEEEEe
Confidence 9988889999999999999844 677899988776532 33467777665
No 129
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=98.79 E-value=2e-08 Score=100.12 Aligned_cols=70 Identities=31% Similarity=0.542 Sum_probs=60.1
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
+|+|+|++|+||+..|. +.+||||++.+++++.+|+++.+++||.|||.+.+-++- . ...+.+.|+..+.
T Consensus 3 ~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~---~----~~~l~~~V~D~d~ 72 (145)
T cd04038 3 LLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN---P----MAPLKLEVFDKDT 72 (145)
T ss_pred EEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC---C----CCEEEEEEEECCC
Confidence 59999999999999997 899999999999999999999999999999987776543 1 3457788886554
No 130
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=98.78 E-value=1.5e-08 Score=96.14 Aligned_cols=73 Identities=18% Similarity=0.378 Sum_probs=58.1
Q ss_pred EEEEEEeecCCccCCC-CCCCCCeEEEEeCCeeeeeecccccCCCCC-cccceEEEEcCcccccccccceeEEEEecCC
Q 002081 539 LTVALIKGDNLAAVDS-SGFCDPYVVFTCNGKSRTSSIKFQQCDPMW-NDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~-~g~sdPyv~~~~~~~~~~s~v~~~~~np~w-n~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
|+|+|++|+||.++|. .|.+||||++.+++++++|+++.+++||.| ||.+.+=++... + ....+.+.|+..+.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~-l---~~~~l~i~V~d~d~ 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE-L---QDEPLQIRVMDHDT 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHH-c---CCCeEEEEEEeCCC
Confidence 6899999999999994 799999999999999999999999999999 887655443311 1 23457788875543
No 131
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.78 E-value=2e-08 Score=95.39 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=57.0
Q ss_pred ceEEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
.|.|+|+|++|+||. +|.+||||++++++++++|+++.+++||.|||.+.+=+.. ...+-....+.+.|...+
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~--~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHE--SPDELFDKIIKISVYDSR 75 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCC--CHHHHhcCeEEEEEEcCc
Confidence 489999999999998 6899999999999999999999999999999885443322 112222345777777544
No 132
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.78 E-value=1.6e-08 Score=123.78 Aligned_cols=120 Identities=34% Similarity=0.521 Sum_probs=97.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEe-CCCCeEEEEEEeCCCCCCCceeE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~-~~~~~L~V~V~D~d~~~~d~~LG 80 (971)
|+|.+..|.||+..|.+|.+||||++.++.+ .++|+++++++||+|||+|..++. +....+.+.|+|+|.-.+++.||
T Consensus 1042 l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg 1121 (1227)
T COG5038 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLG 1121 (1227)
T ss_pred EEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccc
Confidence 7899999999999999999999999999877 699999999999999999999995 66789999999999988999999
Q ss_pred EEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 81 ~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
.+.++|..+..+. ....-.+|..+. .....|.++....+.+.
T Consensus 1122 ~~~idL~~l~~~~---~~n~~i~ldgk~---~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1122 TAEIDLSKLEPGG---TTNSNIPLDGKT---FIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred cccccHhhcCcCC---ccceeeeccCcc---eEecccEeecceecchh
Confidence 9999999985421 223335555433 12346777766666543
No 133
>PLN02228 Phosphoinositide phospholipase C
Probab=98.78 E-value=6.6e-08 Score=114.46 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=95.6
Q ss_pred CEEEEEEEEeeCCCC---CC---CCCCCCcEEEEEEC-----CeEEEeeeccCCCCCee-ccEEEEEEeCCC-CeEEEEE
Q 002081 1 MKLVVRVIEARNIPA---MD---QNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSW-EEEFSFKVEDLK-DELVISV 67 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~---~d---~~g~sDPYv~v~l~-----~~~~rTkvi~~t~nP~W-nE~F~F~v~~~~-~~L~V~V 67 (971)
++|+|+|++|.+|+. .+ .....||||+|.+. ..+++|+++.++.||.| ||+|.|.+..++ ..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998732 11 12347999999983 34579999988899999 999999996655 6799999
Q ss_pred EeCCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 002081 68 LDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (971)
Q Consensus 68 ~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~ 127 (971)
+|+|....++|+|+..+|+..|.. +.+.++|.+..+.. -....|.+++.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~------GYR~VpL~~~~G~~--l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKS------GVRAVRLHDRAGKA--YKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhC------CeeEEEccCCCCCC--CCCeEEEEEEEEcC
Confidence 999988889999999999999843 67889998877653 23578999988864
No 134
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=98.77 E-value=2.2e-08 Score=96.73 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=57.8
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
|+|+|++|++|.++|.+|.+||||++.+++++.+|+++.+|+||.|||.+.+=+.- .....+.+.|+..+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~------~~~~~l~~~v~d~~ 71 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELME------GADSPLSVEVWDWD 71 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCC------CCCCEEEEEEEECC
Confidence 89999999999999999999999999999999999999999999999987654332 11344677776543
No 135
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.77 E-value=1.9e-08 Score=100.88 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=56.8
Q ss_pred EEEEEEEeecCCccCCCCC--------------CCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccc
Q 002081 538 LLTVALIKGDNLAAVDSSG--------------FCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQ 603 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g--------------~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~ 603 (971)
.|+|+|++|++|+.+|.++ .+||||++.+++++.+|+++.+++||+|||.+.+=+... ...
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p-----~~~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFP-----PLC 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCC-----CcC
Confidence 3789999999999999664 799999999999999999999999999998854432221 112
Q ss_pred cceeEEEEecCC
Q 002081 604 SKLHLRIFLNNT 615 (971)
Q Consensus 604 ~~l~l~i~~~~~ 615 (971)
..+.+.|.+.+.
T Consensus 76 ~~l~~~v~D~d~ 87 (151)
T cd04018 76 ERIKIQIRDWDR 87 (151)
T ss_pred CEEEEEEEECCC
Confidence 346777775543
No 136
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=98.76 E-value=2.5e-08 Score=94.74 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=57.5
Q ss_pred EEEEEEEeecCCccCCCC-CCCCCeEEEEeCC---eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEec
Q 002081 538 LLTVALIKGDNLAAVDSS-GFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLN 613 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~-g~sdPyv~~~~~~---~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~ 613 (971)
.|+|+|++|+||.++|.. |.+||||++.+.+ ...+|+++.+++||.|||.+.+-+.... -.....+.+.|+..
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~~~~l~~~V~d~ 78 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDE---VKAGERLSCRLWDS 78 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchh---ccCCCEEEEEEEeC
Confidence 689999999999999998 9999999999743 4568889899999999998776554321 01223577778755
Q ss_pred C
Q 002081 614 N 614 (971)
Q Consensus 614 ~ 614 (971)
+
T Consensus 79 d 79 (111)
T cd04041 79 D 79 (111)
T ss_pred C
Confidence 4
No 137
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.75 E-value=3.8e-08 Score=116.76 Aligned_cols=117 Identities=25% Similarity=0.392 Sum_probs=94.3
Q ss_pred EEEEEEEEeeCCCCCCC----CCCCCcEEEEEECC-----eEEEeeecc-CCCCCeeccEEEEEEeCCC-CeEEEEEEeC
Q 002081 2 KLVVRVIEARNIPAMDQ----NGYSDPYVRLQLGR-----QRFKTKVVR-KSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~----~g~sDPYv~v~l~~-----~~~rTkvi~-~t~nP~WnE~F~F~v~~~~-~~L~V~V~D~ 70 (971)
+|+|.|+.|.++++... +...||||.|++-+ .+.+|+++. ++-||.|+|+|+|++..|+ .-|++.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 59999999997755432 24589999999843 458899554 5799999999999997776 6789999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEE
Q 002081 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (971)
Q Consensus 71 d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~ 126 (971)
|..++|+|+|+..+|+..|.. +.+.++|.++.|.. -..-.|.+++.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~------GyRhVpL~~~~G~~--~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQ------GYRHVPLLSREGEA--LSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhC------ceeeeeecCCCCcc--ccceeEEEEEEEe
Confidence 999999999999999999944 67788999887653 3456777877765
No 138
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=98.75 E-value=1.4e-08 Score=97.01 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=55.3
Q ss_pred ceEEEEEEEeecCCccCCCCCCCCCeEEEEeCC----eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEE
Q 002081 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG----KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIF 611 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~----~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~ 611 (971)
.-.|+|+|++|+||. . .|.|||||++.+.. ++++|+|+++|+||+|||.+.+=++.+. -....|++.|+
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~----l~~~tL~~~V~ 85 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEE----SLDGTLTLTLR 85 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHH----hCCcEEEEEEE
Confidence 357999999999999 3 47799999999753 5779999999999999999877554422 22334788887
Q ss_pred ecC
Q 002081 612 LNN 614 (971)
Q Consensus 612 ~~~ 614 (971)
.-+
T Consensus 86 d~D 88 (118)
T cd08677 86 CCD 88 (118)
T ss_pred eCC
Confidence 544
No 139
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=98.75 E-value=3e-08 Score=95.79 Aligned_cols=70 Identities=21% Similarity=0.485 Sum_probs=57.3
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCCee-eeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~-~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
|.|.|++|+||.++|.+|.+||||++.+++++ .+|+++.+|+||.|||.+.+-++- ....+.+.++..+.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-------~~~~l~v~v~d~~~ 72 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP-------GFHTVSFYVLDEDT 72 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC-------CCCEEEEEEEECCC
Confidence 88999999999999999999999999998875 488888899999999988775432 12347777775553
No 140
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=98.74 E-value=2.7e-08 Score=95.38 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=58.7
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeeccc-ccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKF-QQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~-~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
.|+|.|++|+||...|..|.+||||++.+++++++|+++. .++||.|||.+.+=++.. ....+.+.|+..+.
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~------~~~~l~i~v~d~~~ 74 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED------KKPILKVAVFDDDK 74 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC------CCCEEEEEEEeCCC
Confidence 5899999999999999999999999999999988888765 589999999877644431 23457888886543
No 141
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=98.74 E-value=3.9e-08 Score=95.45 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=60.5
Q ss_pred EEEEEEEeecCCccCCC--CCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 538 LLTVALIKGDNLAAVDS--SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~--~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
.|+|++++|+||.++|. .|.+||||++.+++++.+|+++.+|+||.||+.+.+-+.- .....|.+.|+..+.
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~------~~~~~l~i~v~d~~~ 75 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS------AQNQLLKLILWDKDR 75 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecC------CCCCEEEEEEEECCC
Confidence 58999999999999998 8999999999999999999999999999999987765532 123457788875543
No 142
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=98.73 E-value=2.7e-08 Score=96.88 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=60.8
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEE-EcCcccccccccceeEEEEecCC
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWI-PLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~-~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
-.|+|+|++|++|. .|..|.+||||++.+++++++|+++.+++||+|||.+.+.. .+ ..+..|.+.|+..+.
T Consensus 28 ~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~------~~~~~L~v~V~D~d~ 100 (127)
T cd04032 28 ATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVEL------SPGGKLRFEVWDRDN 100 (127)
T ss_pred EEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccC------CCCCEEEEEEEeCCC
Confidence 58999999999998 47889999999999999999999999999999999988763 33 123457888886654
Q ss_pred C
Q 002081 616 K 616 (971)
Q Consensus 616 ~ 616 (971)
.
T Consensus 101 ~ 101 (127)
T cd04032 101 G 101 (127)
T ss_pred C
Confidence 3
No 143
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=98.73 E-value=3e-08 Score=95.83 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=53.1
Q ss_pred EEEEEEeecCCccCC-CCCCCCCeEEEEeCCe-eeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEec
Q 002081 539 LTVALIKGDNLAAVD-SSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLN 613 (971)
Q Consensus 539 l~v~l~~~~~l~~~d-~~g~sdPyv~~~~~~~-~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~ 613 (971)
|+|++++|+||.++| .+|.+||||++..+++ ..+|+++.+|+||.|||.+++=++- + ...+++.++..
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~-~------~~~l~~~v~d~ 71 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR-T------FRHLSFYIYDR 71 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC-C------CCEEEEEEEEC
Confidence 789999999999985 5689999999999876 4588888999999999887765431 1 12466666543
No 144
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=4.2e-08 Score=114.05 Aligned_cols=87 Identities=38% Similarity=0.591 Sum_probs=76.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeeccCCCCCeeccEEEEEEeC--C-CCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG--R---QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~--~---~~~rTkvi~~t~nP~WnE~F~F~v~~--~-~~~L~V~V~D~d~~ 73 (971)
+|+|.|++|+||..++..+.+||||++.+- . .+++|.+++++.||+|||+|.|.++. . ...|.|+|||+|.+
T Consensus 299 ~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~ 378 (421)
T KOG1028|consen 299 RLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTL 378 (421)
T ss_pred eEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccc
Confidence 689999999999999999999999999983 2 35899999999999999999998842 2 35799999999999
Q ss_pred CCCceeEEEEEeCcc
Q 002081 74 FNDDFVGFLKIPVSR 88 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~ 88 (971)
+.+++||++.+....
T Consensus 379 ~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 379 GSNDLIGRCILGSDS 393 (421)
T ss_pred cccceeeEEEecCCC
Confidence 999999998887765
No 145
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=98.70 E-value=4.9e-08 Score=94.64 Aligned_cols=55 Identities=24% Similarity=0.547 Sum_probs=47.5
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeCC---eeeeeecccccCCCCCcccceEE
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNDLADVW 591 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~---~~~~s~v~~~~~np~wn~~~~~w 591 (971)
+.|+|+|++|+||..+|.+|.+||||++.+++ +..+|+++.+++||.|||.+.+=
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~ 58 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE 58 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEE
Confidence 36899999999999999999999999999764 35688888899999999876543
No 146
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=98.70 E-value=3.1e-08 Score=95.23 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=56.5
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeC---CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~---~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
+|+|+|++|+||...|..|.+||||++..+ +++++|+++.+++||+|||.+.+=+.- . ....+.+.|+..+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~--~----~~~~l~v~v~d~d 74 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS--Q----VKNVLELTVMDED 74 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCc--c----cCCEEEEEEEECC
Confidence 589999999999999999999999999975 467788888999999999987763322 1 1234777777544
No 147
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.70 E-value=3.6e-08 Score=95.35 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=58.7
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEE
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIF 611 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~ 611 (971)
-.|+|+|++|+||.++|.+|.+||||++.+.+ ++++|+++.+++||+|||.+.+-+.- ..+-....+.+.|+
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~~l~~~V~ 92 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVR---RETLKERTLEVTVW 92 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccC---HHHhCCCEEEEEEE
Confidence 57999999999999999999999999999754 67788898999999999987664322 12223345777777
Q ss_pred ecC
Q 002081 612 LNN 614 (971)
Q Consensus 612 ~~~ 614 (971)
..+
T Consensus 93 d~~ 95 (125)
T cd04031 93 DYD 95 (125)
T ss_pred eCC
Confidence 544
No 148
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=98.70 E-value=1.9e-08 Score=99.25 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=56.8
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEE
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIF 611 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~ 611 (971)
-.|+|+|++|+||.++|.+|.+||||++.+.. +++||+|+++|+||+|||.+.+=++.+ +-....|.+.|+
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~----~l~~~~l~~~V~ 90 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI----VLQDLSLRVTVA 90 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH----HhCCcEEEEEEE
Confidence 46999999999999999999999999999632 266889999999999999866644331 122334777777
Q ss_pred ecC
Q 002081 612 LNN 614 (971)
Q Consensus 612 ~~~ 614 (971)
..+
T Consensus 91 ~~d 93 (136)
T cd08406 91 EST 93 (136)
T ss_pred eCC
Confidence 544
No 149
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=5.4e-08 Score=95.36 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=57.1
Q ss_pred EEEEEEEeecCCccCCCC----------CCCCCeEEEEeCCee-eeeecccccCCCCCcccceEEEEcCcccccccccce
Q 002081 538 LLTVALIKGDNLAAVDSS----------GFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKL 606 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~----------g~sdPyv~~~~~~~~-~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l 606 (971)
.|+|+|++|++|.+.|.+ |.+||||++.+++++ .+|+++.+|+||.|||.+++-+. .+..+
T Consensus 5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--------~~~~l 76 (132)
T cd04014 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--------NGRNL 76 (132)
T ss_pred EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--------CCCEE
Confidence 589999999999999963 689999999999976 58888889999999999887653 23458
Q ss_pred eEEEEecC
Q 002081 607 HLRIFLNN 614 (971)
Q Consensus 607 ~l~i~~~~ 614 (971)
++.|+..+
T Consensus 77 ~~~v~d~~ 84 (132)
T cd04014 77 ELTVFHDA 84 (132)
T ss_pred EEEEEeCC
Confidence 88887544
No 150
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.69 E-value=4.7e-08 Score=94.20 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=57.3
Q ss_pred cCceEEEEEEEeecCCccCCCCCCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeE
Q 002081 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHL 608 (971)
Q Consensus 534 ~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l 608 (971)
-.+-.|+|+|++|+||.++| .|.+||||++.+. ..+++|+++.+++||+|||.+.+-++.+. .+..+.+
T Consensus 9 ~~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~-----~~~~l~v 82 (119)
T cd08685 9 GQNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD-----YQKRLLV 82 (119)
T ss_pred EcCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH-----hCCEEEE
Confidence 34567999999999999999 8999999999964 34668888899999999999887654311 2234666
Q ss_pred EEEec
Q 002081 609 RIFLN 613 (971)
Q Consensus 609 ~i~~~ 613 (971)
.|...
T Consensus 83 ~V~~~ 87 (119)
T cd08685 83 TVWNK 87 (119)
T ss_pred EEECC
Confidence 66643
No 151
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.68 E-value=5.8e-08 Score=94.80 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=58.0
Q ss_pred cCceEEEEEEEeecCCccCCCC-CCCCCeEEEEeC---CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 534 GDGWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 534 ~~~~~l~v~l~~~~~l~~~d~~-g~sdPyv~~~~~---~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
.+...|+|+|++|+||.++|.. |.+||||++.+. .++++|+++.+|+||.|||.+.+- .+ ...+.....|++.
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~-~~--~~~~~~~~~L~~~ 89 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFY-GI--PYNQLQDLSLHFA 89 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEc-cc--CHHHhCCCEEEEE
Confidence 3457899999999999999986 999999999863 556688898999999999997761 11 1122223347777
Q ss_pred EEec
Q 002081 610 IFLN 613 (971)
Q Consensus 610 i~~~ 613 (971)
|...
T Consensus 90 V~d~ 93 (128)
T cd08388 90 VLSF 93 (128)
T ss_pred EEEc
Confidence 7643
No 152
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.67 E-value=4.3e-08 Score=98.08 Aligned_cols=53 Identities=25% Similarity=0.438 Sum_probs=47.6
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEEEE
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVWIP 593 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w~~ 593 (971)
|+|+|++|+||.+ .+|.+||||++.+.+ ++++|+++.+|+||+|||.+.+=+.
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~ 59 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEe
Confidence 8999999999998 579999999999977 6788999999999999998876654
No 153
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=98.66 E-value=7e-08 Score=97.74 Aligned_cols=53 Identities=25% Similarity=0.469 Sum_probs=46.6
Q ss_pred EEEEEEEeecCCccCC------------------------------CCCCCCCeEEEEeCCee-eeeecccccCCCCCcc
Q 002081 538 LLTVALIKGDNLAAVD------------------------------SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWND 586 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d------------------------------~~g~sdPyv~~~~~~~~-~~s~v~~~~~np~wn~ 586 (971)
.|.|++++|++|+.+| ..|.+||||++.+++.+ .+|+++.+++||.|||
T Consensus 8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE 87 (158)
T cd04015 8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNE 87 (158)
T ss_pred eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccce
Confidence 5889999999999998 36789999999999866 4888889999999998
Q ss_pred cceE
Q 002081 587 LADV 590 (971)
Q Consensus 587 ~~~~ 590 (971)
.+.+
T Consensus 88 ~F~~ 91 (158)
T cd04015 88 SFHI 91 (158)
T ss_pred EEEE
Confidence 8765
No 154
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.66 E-value=6.9e-08 Score=96.20 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=56.1
Q ss_pred eEEEEEEEeecCCccCC-CCCCCCCeEEEEeC--C---eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEE
Q 002081 537 WLLTVALIKGDNLAAVD-SSGFCDPYVVFTCN--G---KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRI 610 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d-~~g~sdPyv~~~~~--~---~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i 610 (971)
-.|+|+|++|+||++.| ..|.+||||++.+. + +++||+++++|+||+|||.+.+=+++ .+..|.+.|
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l-------~~~~L~v~V 101 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP-------TGKTLQVIV 101 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC-------CCCEEEEEE
Confidence 36999999999999985 67999999999973 2 37789999999999999998876653 233477888
Q ss_pred Ee
Q 002081 611 FL 612 (971)
Q Consensus 611 ~~ 612 (971)
+.
T Consensus 102 ~~ 103 (146)
T cd04028 102 WG 103 (146)
T ss_pred Ee
Confidence 74
No 155
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.66 E-value=7.9e-08 Score=93.29 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=55.7
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCee--eeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS--RTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~--~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
+|+|.|++|++|.++|..|.+||||++.+++++ .+|+++.+++||.|||.+.+=+.+ .....+.+.|+..+.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~------~~~~~L~~~V~d~d~ 74 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATL------PGNSILKISVMDYDL 74 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecC------CCCCEEEEEEEECCC
Confidence 489999999999999999999999999999876 345566789999999886654332 112357777775543
No 156
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=98.65 E-value=8.2e-08 Score=92.12 Aligned_cols=71 Identities=23% Similarity=0.481 Sum_probs=58.2
Q ss_pred EEEEEEEeecCCccCCC------CCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEE
Q 002081 538 LLTVALIKGDNLAAVDS------SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIF 611 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~------~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~ 611 (971)
.|+|+|++|+||..+|. .|.+||||++.++++..+|+++.+++||.|||.+.+-+.- .....+.+.++
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~------~~~~~l~i~v~ 75 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDE------VPGQELEIELF 75 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCC------CCCCEEEEEEE
Confidence 48999999999999985 3789999999999999999999999999999987665532 12345777777
Q ss_pred ecC
Q 002081 612 LNN 614 (971)
Q Consensus 612 ~~~ 614 (971)
..+
T Consensus 76 d~~ 78 (121)
T cd08391 76 DED 78 (121)
T ss_pred ecC
Confidence 544
No 157
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=98.65 E-value=7.3e-08 Score=94.13 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=59.1
Q ss_pred CceEEEEEEEeecCCccCCCC-CCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeE
Q 002081 535 DGWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHL 608 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d~~-g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l 608 (971)
..-.|+|+|++|+||.++|.. |.+||||++... .+++||+++.+++||+|||.+.+=++. ++-.+..|++
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~----~~l~~~~L~v 88 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA----DLLSSRQLQV 88 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH----HHhCCcEEEE
Confidence 346899999999999999985 999999999963 447788998999999999987653322 2223455888
Q ss_pred EEEecC
Q 002081 609 RIFLNN 614 (971)
Q Consensus 609 ~i~~~~ 614 (971)
.|...+
T Consensus 89 ~V~~~~ 94 (128)
T cd08392 89 SVWHSR 94 (128)
T ss_pred EEEeCC
Confidence 887544
No 158
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=98.63 E-value=9.9e-08 Score=92.79 Aligned_cols=76 Identities=25% Similarity=0.267 Sum_probs=57.1
Q ss_pred CceEEEEEEEeecCCccCCC-CCCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeE
Q 002081 535 DGWLLTVALIKGDNLAAVDS-SGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHL 608 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d~-~g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l 608 (971)
..-.|+|+|++|+||.+.|. .|.+||||++... .++++|+++++++||+|||.+.+=++. .+-.+..+.+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~----~~l~~~~L~~ 88 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISH----SQLETRTLQL 88 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCH----HHhCCCEEEE
Confidence 44569999999999999986 5899999999863 346788898999999999987654432 1112334777
Q ss_pred EEEecC
Q 002081 609 RIFLNN 614 (971)
Q Consensus 609 ~i~~~~ 614 (971)
.|+..+
T Consensus 89 ~V~d~~ 94 (125)
T cd04029 89 SVWHYD 94 (125)
T ss_pred EEEECC
Confidence 777543
No 159
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=98.63 E-value=8.9e-08 Score=92.76 Aligned_cols=68 Identities=24% Similarity=0.477 Sum_probs=56.3
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeC-CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN-GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~-~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
|+|+|++|+||..+|..|.+||||++.++ .+..+|+++.+++||.|||.+.+=++- ...+.+.|+..+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--------~~~l~i~V~d~~ 70 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--------SSIITIQVFDQK 70 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--------CCEEEEEEEECC
Confidence 78999999999999999999999999996 677788998999999999886654321 345777777544
No 160
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=98.63 E-value=8.7e-08 Score=96.28 Aligned_cols=74 Identities=27% Similarity=0.496 Sum_probs=57.7
Q ss_pred CceEEEEEEEeecCCccCCCCCCCCCeEEEEeCCe-----------------------------eeeeecccccCCCCCc
Q 002081 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-----------------------------SRTSSIKFQQCDPMWN 585 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~-----------------------------~~~s~v~~~~~np~wn 585 (971)
..+.|+|+|++|+||.++|.+|.+||||++.+... ..+|.++.+|+||.||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 34899999999999999999999999999998632 2578888999999999
Q ss_pred ccceEEEEcCcccccccccceeEEEEecC
Q 002081 586 DLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 586 ~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
|.+.+=+.- + ....+.+.|+..+
T Consensus 106 E~F~f~v~~---~---~~~~L~i~V~D~d 128 (153)
T cd08676 106 ETFRFEVED---V---SNDQLHLDIWDHD 128 (153)
T ss_pred cEEEEEecc---C---CCCEEEEEEEecC
Confidence 887764422 1 2334667776543
No 161
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=98.63 E-value=6.7e-08 Score=93.94 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=57.2
Q ss_pred ceEEEEEEEeecCCccCCCC-CCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 536 GWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d~~-g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
.-.|+|+|++|+||.++|.. |.+||||++... .++++|+++++++||+|||.+.+=++. .+-.+..|.+.
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~----~~l~~~~L~~~ 89 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVER----EELPTRVLNLS 89 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCH----HHhCCCEEEEE
Confidence 35799999999999999986 899999999973 345788999999999999986653322 11223357777
Q ss_pred EEecC
Q 002081 610 IFLNN 614 (971)
Q Consensus 610 i~~~~ 614 (971)
|...+
T Consensus 90 V~d~~ 94 (125)
T cd08393 90 VWHRD 94 (125)
T ss_pred EEeCC
Confidence 77544
No 162
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.62 E-value=1.6e-07 Score=110.29 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=92.0
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CeEEEeeeccCCCCCeec-cEEEEEEeCCC-CeEEEEEEeCCC
Q 002081 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG------RQRFKTKVVRKSLSPSWE-EEFSFKVEDLK-DELVISVLDEDK 72 (971)
Q Consensus 1 m~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~------~~~~rTkvi~~t~nP~Wn-E~F~F~v~~~~-~~L~V~V~D~d~ 72 (971)
|+|.|.|+.||+|+..+ -|-+-|||.|.+- +..++|.|+.+++||+|| |.|+|.+.+|. ..|++.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 68999999999998543 3446699999983 234667777789999999 99999997766 789999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
++...|||++..|+..+.. +-+-.+|.+.- ++.-....|++.+..-+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~------GfRsVpLkN~y--SEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKS------GFRSVPLKNGY--SEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhc------cceeeecccCc--hhhhhhhhheeeeEeccc
Confidence 9998999999999999843 34456666432 223345667777766554
No 163
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.62 E-value=9.8e-08 Score=93.46 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=56.9
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCe-------eeeeecccccCCCCCcccceEEEEcCcccccccccceeEEE
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-------SRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRI 610 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~-------~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i 610 (971)
+|+|+|++|+||..+|..|.+||||++.++++ +.+|.++.+|+||.||+.+.+-+.-. ...+.+.|
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-------~~~l~~~v 73 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-------EHRLLFEV 73 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-------CCEEEEEE
Confidence 48999999999999999999999999998765 45778889999999999877755321 23466777
Q ss_pred EecCC
Q 002081 611 FLNNT 615 (971)
Q Consensus 611 ~~~~~ 615 (971)
+..+.
T Consensus 74 ~d~~~ 78 (133)
T cd04033 74 FDENR 78 (133)
T ss_pred EECCC
Confidence 75543
No 164
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.61 E-value=1.1e-07 Score=93.11 Aligned_cols=77 Identities=22% Similarity=0.348 Sum_probs=59.6
Q ss_pred CceEEEEEEEeecCCccCCCCCCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
..-.|+|+|++|+||.++|.+|.+||||++.+. .++++|+++.+++||.|||.+.+-++. .+-.+..+.+.
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~----~~l~~~~l~~~ 86 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKH----SDLAKKTLEIT 86 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCH----HHhCCCEEEEE
Confidence 345799999999999999999999999999974 346788898999999999986654433 11223457788
Q ss_pred EEecCC
Q 002081 610 IFLNNT 615 (971)
Q Consensus 610 i~~~~~ 615 (971)
|+..+.
T Consensus 87 V~d~d~ 92 (133)
T cd08384 87 VWDKDI 92 (133)
T ss_pred EEeCCC
Confidence 875543
No 165
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=98.61 E-value=6.3e-08 Score=95.70 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=56.5
Q ss_pred eEEEEEEEeecCCccCCC--CCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 537 WLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~--~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
-.|+|.|++|+||.++|. .+.+||||++.+.. ++|||+++.+++||+|||.+.+=++. .+-....|.+.
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~----~~L~~~~L~~~ 90 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS----ELLAASSVELE 90 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH----HHhCccEEEEE
Confidence 459999999999999994 35699999999533 35689999999999999997775543 12223347777
Q ss_pred EEecCC
Q 002081 610 IFLNNT 615 (971)
Q Consensus 610 i~~~~~ 615 (971)
|+..+.
T Consensus 91 V~d~d~ 96 (138)
T cd08407 91 VLNQDS 96 (138)
T ss_pred EEeCCC
Confidence 775553
No 166
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.61 E-value=1.2e-07 Score=91.79 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=59.4
Q ss_pred CceEEEEEEEeecCCccCCCCCCCCCeEEEEeC---CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEE
Q 002081 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIF 611 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~---~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~ 611 (971)
..-.|+|+|++|+||.++|..|.+||||++.+. .++++|+++.+++||+|||.+.+.++. .+-.+..+.+.|+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~----~~l~~~~l~~~V~ 89 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPY----SELGNKTLVFSVY 89 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCH----HHhCCCEEEEEEE
Confidence 345799999999999999999999999999863 356688888999999999987766543 1122345788887
Q ss_pred ecC
Q 002081 612 LNN 614 (971)
Q Consensus 612 ~~~ 614 (971)
..+
T Consensus 90 d~d 92 (124)
T cd08385 90 DFD 92 (124)
T ss_pred eCC
Confidence 544
No 167
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=98.61 E-value=5.8e-08 Score=94.56 Aligned_cols=70 Identities=19% Similarity=0.396 Sum_probs=58.3
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
.|+|+|++|++|..+|..|.+||||++.+++++.+|+++.+++||.|||.+.+-..- . ...+.+.|+..+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~---~----~~~l~i~v~d~d 71 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN---S----SDRIKVRVWDED 71 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecC---C----CCEEEEEEEECC
Confidence 489999999999999999999999999999999999999999999999988754321 1 234777777544
No 168
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.61 E-value=1.2e-07 Score=91.83 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=59.9
Q ss_pred cCceEEEEEEEeecCCccCCCCCCCCCeEEEEe---CCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEE
Q 002081 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC---NGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRI 610 (971)
Q Consensus 534 ~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~---~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i 610 (971)
.....|+|+|++|+||.++|.+|.+||||++.. +.++++|+++.+++||.|||.+.+-++. .+-....+.+.|
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~----~~l~~~~l~i~V 88 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPP----QELPKRTLEVLL 88 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCH----HHhCCCEEEEEE
Confidence 344689999999999999999999999999996 2566788998999999999987765443 122234477777
Q ss_pred EecC
Q 002081 611 FLNN 614 (971)
Q Consensus 611 ~~~~ 614 (971)
+..+
T Consensus 89 ~d~~ 92 (124)
T cd08387 89 YDFD 92 (124)
T ss_pred EECC
Confidence 7543
No 169
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.60 E-value=1.6e-07 Score=86.87 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=72.2
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCce
Q 002081 3 LVVRVIEARNIPAMD---QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d---~~g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~ 78 (971)
|.|+|..|+|+.... ..+.+||||.+.+++. +.||++ +.||.|||+|.|+++ ....+.+.|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 689999999998877 5678999999999876 789987 479999999999994 57899999999876 55567
Q ss_pred eEEEEEeCccccc
Q 002081 79 VGFLKIPVSRVFD 91 (971)
Q Consensus 79 LG~v~I~l~~l~~ 91 (971)
+|..-++++++.+
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 8999999988864
No 170
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.58 E-value=1.7e-07 Score=92.07 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=57.5
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeC-------CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-------GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~-------~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
..|+|+|++|++|..+|.+|.+||||++.+. .++++|+++.+|+||+|||.+.+=+.. ...+.....+.+.
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~--~~~~~~~~~l~~~ 93 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP--EQCSVEGALLLFT 93 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech--hhcccCCCEEEEE
Confidence 6799999999999999999999999999985 457788999999999999876543322 1111223457777
Q ss_pred EEecC
Q 002081 610 IFLNN 614 (971)
Q Consensus 610 i~~~~ 614 (971)
++..+
T Consensus 94 V~d~d 98 (133)
T cd04009 94 VKDYD 98 (133)
T ss_pred EEecC
Confidence 76443
No 171
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=98.57 E-value=2.1e-07 Score=89.12 Aligned_cols=71 Identities=23% Similarity=0.434 Sum_probs=58.8
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
.|+|+|++|+||..+|.+|.+||||++.+++++.+|.++.+++||.||+.+.+=+.- . +..+.+.|+..+.
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~---~----~~~l~~~v~d~~~ 72 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD---I----HDVLEVTVYDEDK 72 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC---c----CCEEEEEEEECCC
Confidence 478999999999999999999999999999999999999999999999987654321 1 3457788875543
No 172
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.57 E-value=1.5e-07 Score=91.37 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=59.6
Q ss_pred ecCceEEEEEEEeecCCccCCCCCCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEEEcCccccccccccee
Q 002081 533 QGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLH 607 (971)
Q Consensus 533 ~~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~ 607 (971)
....-.|+|+|++|+||..+|..|.+||||++.+. .++++|.++.+++||+|||.+.+=++.. +-....++
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~----~l~~~~l~ 87 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE----ELKRRTLD 87 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHH----HhcCCEEE
Confidence 34457899999999999999999999999999974 4677888989999999999876544331 11234577
Q ss_pred EEEEec
Q 002081 608 LRIFLN 613 (971)
Q Consensus 608 l~i~~~ 613 (971)
+.|...
T Consensus 88 i~v~~~ 93 (127)
T cd04030 88 VAVKNS 93 (127)
T ss_pred EEEEEC
Confidence 777644
No 173
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.56 E-value=2.5e-07 Score=89.55 Aligned_cols=74 Identities=31% Similarity=0.500 Sum_probs=59.0
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeeccc-ccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKF-QQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~-~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
.|+|+|++|+||..+|..+.+||||++.++++.++|++.. .++||.||+.+.+=+.... ......+.|.|+..+
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~---~~~~~~l~v~V~d~~ 76 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPG---WGGDTKLILRIMDKD 76 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcc---cCCCCEEEEEEEECc
Confidence 4899999999999999999999999999999998888877 4999999998776555421 112345777777554
No 174
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.56 E-value=2.2e-07 Score=89.99 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=58.6
Q ss_pred CceEEEEEEEeecCCccCCCCCCCCCeEEEEe---CCeeeeeecccccCCCCCcccceEEEEcCcccccc-cccceeEEE
Q 002081 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC---NGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQA-CQSKLHLRI 610 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~---~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~-~~~~l~l~i 610 (971)
.+-.|+|++++|+||..+|.+|.+||||++.+ ++++++|+++.+++||.|||.+.+=. ...+. .+..+.+.|
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~----~~~~~l~~~~l~~~v 89 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG----FPYEKLQQRVLYLQV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcc----cCHHHhCCCEEEEEE
Confidence 35679999999999999999999999999997 46778899999999999998865421 11111 234577777
Q ss_pred EecC
Q 002081 611 FLNN 614 (971)
Q Consensus 611 ~~~~ 614 (971)
...+
T Consensus 90 ~d~d 93 (125)
T cd08386 90 LDYD 93 (125)
T ss_pred EeCC
Confidence 7544
No 175
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.56 E-value=1.2e-07 Score=91.57 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=52.5
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
|+|.|++|+||.++ .+||||++.+++++++|+++.+++||+|||.+.+=+.- .....|.+.|...+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~------~~~~~L~~~v~d~d 67 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDR------LQGSTLEVSVWDKD 67 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCC------CcCCEEEEEEEeCC
Confidence 88999999999998 79999999999999999999999999999886653221 12334666665443
No 176
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.54 E-value=1.4e-07 Score=91.63 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=58.8
Q ss_pred ceEEEEEEEeecCCccCCCCCCCCCeEEEEe---C---CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTC---N---GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~---~---~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
.-.|+|+|++|+||.++|..|.+||||++.+ + .++++|+++.+++||+|||.+.+=++. .+-.+..|++.
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~----~~L~~~~L~~~ 88 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS----TKLYQKTLQVD 88 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH----HHhhcCEEEEE
Confidence 3579999999999999999999999999993 3 347889999999999999997764332 22233458888
Q ss_pred EEecC
Q 002081 610 IFLNN 614 (971)
Q Consensus 610 i~~~~ 614 (971)
|...+
T Consensus 89 V~~~~ 93 (124)
T cd08680 89 VCSVG 93 (124)
T ss_pred EEeCC
Confidence 87543
No 177
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.53 E-value=2.2e-07 Score=94.56 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=57.3
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEe-----CCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEE
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTC-----NGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIF 611 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~-----~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~ 611 (971)
-.|+|+|++|+||.+.|..|.+||||++.. +.++++|+++.+++||.|||.+.+=..- ..+-.+..+.+.|+
T Consensus 27 g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~---~~~l~~~~L~i~V~ 103 (162)
T cd04020 27 GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVS---PEDLSQACLELTVW 103 (162)
T ss_pred ceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCC---HHHhCCCEEEEEEE
Confidence 469999999999999999999999999986 3467789999999999999986542111 12223345777777
Q ss_pred ecC
Q 002081 612 LNN 614 (971)
Q Consensus 612 ~~~ 614 (971)
..+
T Consensus 104 d~d 106 (162)
T cd04020 104 DHD 106 (162)
T ss_pred eCC
Confidence 544
No 178
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.53 E-value=2e-07 Score=91.81 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=57.2
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEe-CC----eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEE
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTC-NG----KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIF 611 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~-~~----~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~ 611 (971)
-.|+|+|++|+||..+|.+|.+||||++.+ .+ ++++|+++.+|+||.|||.+.+=++. .+-....+.+.|.
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~----~~l~~~~l~~~V~ 89 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQ----EELENVSLVFTVY 89 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCH----HHhCCCEEEEEEE
Confidence 469999999999999999999999999996 32 45788999999999999987654322 2222334667777
Q ss_pred ecCC
Q 002081 612 LNNT 615 (971)
Q Consensus 612 ~~~~ 615 (971)
..+.
T Consensus 90 d~d~ 93 (135)
T cd08410 90 GHNV 93 (135)
T ss_pred eCCC
Confidence 5443
No 179
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.52 E-value=1.8e-07 Score=106.04 Aligned_cols=119 Identities=30% Similarity=0.571 Sum_probs=99.0
Q ss_pred EEEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEEEeeeccCCCCCeecc-EEEEEEeCC---CCeEEEEEEeCCCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQ-NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEE-EFSFKVEDL---KDELVISVLDEDKYFND 76 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~-~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE-~F~F~v~~~---~~~L~V~V~D~d~~~~d 76 (971)
+|.|.|..||+||.+|. ....|.||.+.+++..++|.|..+++||.||- -|.|.|++. ++.|.|.++|+|.++.+
T Consensus 4 kl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysan 83 (1169)
T KOG1031|consen 4 KLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSAN 83 (1169)
T ss_pred cceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccc
Confidence 58899999999999997 45589999999999999999999999999994 689999543 57899999999999999
Q ss_pred ceeEEEEEeCccccccC-------CCCCCcEEEEcccCCCCCCCCcceEEEEEEE
Q 002081 77 DFVGFLKIPVSRVFDAD-------NKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (971)
Q Consensus 77 ~~LG~v~I~l~~l~~~~-------~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~ 124 (971)
+-||.+.|.+..|.-++ .+.....|+++.+.-. ..+|+|.+-+.
T Consensus 84 daigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih----girgeinvivk 134 (1169)
T KOG1031|consen 84 DAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH----GIRGEINVIVK 134 (1169)
T ss_pred cccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc----cccceeEEEEE
Confidence 99999999998875322 2234578999986542 46799887664
No 180
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.50 E-value=2.1e-07 Score=91.68 Aligned_cols=74 Identities=27% Similarity=0.469 Sum_probs=56.8
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeC--C---eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEE
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--G---KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIF 611 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~--~---~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~ 611 (971)
-.|+|.|++|++|..+|.+|.+||||++.+. + ++++|+++.+++||.|||.+.+-++.+ +-....+.+.|+
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~----~l~~~~l~~~v~ 90 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE----QIQKVHLIVTVL 90 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHH----HhCCCEEEEEEE
Confidence 4699999999999999999999999999974 2 356788889999999999877655431 122334667776
Q ss_pred ecC
Q 002081 612 LNN 614 (971)
Q Consensus 612 ~~~ 614 (971)
..+
T Consensus 91 d~~ 93 (136)
T cd08402 91 DYD 93 (136)
T ss_pred eCC
Confidence 544
No 181
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=98.49 E-value=3.7e-07 Score=88.70 Aligned_cols=69 Identities=25% Similarity=0.435 Sum_probs=54.7
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeC--CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCCC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN--GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNTK 616 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~--~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~~ 616 (971)
|.|++++|+||.. ..|.+||||++.++ +++++|+++.+|+||.|||.+.+ .+.. ....|.+.|++.+..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f--~~~~-----~~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLF--ELSP-----NSKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEE--EeCC-----CCCEEEEEEEECCCC
Confidence 6799999999998 68999999999998 47789999899999999988754 3311 133588888865543
No 182
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.49 E-value=1.8e-07 Score=109.38 Aligned_cols=134 Identities=30% Similarity=0.490 Sum_probs=99.2
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEECCeE----EEeeeccCCCCCeeccEEEEEEeCC----------------CCeE
Q 002081 4 VVRVIEARNIPAMDQNGYSDPYVRLQLGRQR----FKTKVVRKSLSPSWEEEFSFKVEDL----------------KDEL 63 (971)
Q Consensus 4 ~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~----~rTkvi~~t~nP~WnE~F~F~v~~~----------------~~~L 63 (971)
.+.+++++++.|.. ++.+||||++...+.. .+|++++++.+|.|+|.|+|.+... ...|
T Consensus 134 ~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 134 VCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred hhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 44566677777765 4559999999986543 6999999999999999999998432 3578
Q ss_pred EEEEEe-CCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCC---CCCCcceEEEEEEEEEecCCCCcccCCCC
Q 002081 64 VISVLD-EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKK---SKNKDCGEILLTISFSHNTSSADFNINSD 139 (971)
Q Consensus 64 ~V~V~D-~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k---~~~~~~G~I~L~i~~~~~~~~~~~~~~~~ 139 (971)
++++|+ .+....++|+|++.+|+..+.. ......||.|+++... ......|.++|.+.|... ..+++.
T Consensus 213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~---~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D-----~Vlps~ 284 (800)
T KOG2059|consen 213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQ---KSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED-----HVLPSQ 284 (800)
T ss_pred EEeeccchhhhhhhhhceeEEeehhhhhh---ccCccceEEEecCCCcccCCCCCCccceeeeEEeeec-----eeccHh
Confidence 999998 5666679999999999998752 3346789999987532 234567999999999743 233444
Q ss_pred CCCcCcC
Q 002081 140 PLDQLKT 146 (971)
Q Consensus 140 ~~~~~~~ 146 (971)
.+.++..
T Consensus 285 ~Y~pL~~ 291 (800)
T KOG2059|consen 285 YYKPLMD 291 (800)
T ss_pred hhhhHHH
Confidence 4554443
No 183
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.49 E-value=4.2e-08 Score=113.95 Aligned_cols=89 Identities=37% Similarity=0.567 Sum_probs=79.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeeccCCCCCeeccEEEEEEeC-C----CCeEEEEEEe
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVED-L----KDELVISVLD 69 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~-------~~rTkvi~~t~nP~WnE~F~F~v~~-~----~~~L~V~V~D 69 (971)
+|.|.|+-|+++.+.|.||.+||||+|.+++. .++|+|+.+|+||+|+|+|+|.|+. + ..-|.++|+|
T Consensus 948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMD 1027 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMD 1027 (1103)
T ss_pred chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeec
Confidence 57789999999999999999999999999854 4899999999999999999999943 2 2468999999
Q ss_pred CCCCCCCceeEEEEEeCcccc
Q 002081 70 EDKYFNDDFVGFLKIPVSRVF 90 (971)
Q Consensus 70 ~d~~~~d~~LG~v~I~l~~l~ 90 (971)
+|-+..+||-|++.+.|.++.
T Consensus 1028 HD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1028 HDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cceecccccchHHHHhhCCCC
Confidence 999999999999999888873
No 184
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.48 E-value=3.2e-07 Score=90.42 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=56.3
Q ss_pred ceEEEEEEEeecCCccCCCCCCCCCeEEEEeC--C---eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEE
Q 002081 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--G---KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRI 610 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~--~---~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i 610 (971)
.-.|+|++++|+||.++|.+|.+||||++.+. + .+++|+|+.+++||.|||.+.+=++. .+.....+.+.|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~----~~~~~~~l~~~v 89 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPS----EELEDISVEFLV 89 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCH----HHhCCCEEEEEE
Confidence 34699999999999999999999999999973 2 25678888999999999986653332 112223466677
Q ss_pred EecC
Q 002081 611 FLNN 614 (971)
Q Consensus 611 ~~~~ 614 (971)
...+
T Consensus 90 ~d~d 93 (136)
T cd08404 90 LDSD 93 (136)
T ss_pred EECC
Confidence 6544
No 185
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.48 E-value=4.4e-07 Score=86.59 Aligned_cols=51 Identities=20% Similarity=0.370 Sum_probs=44.0
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCCee-eeeecccccCCCCCcccceEEEE
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNDLADVWIP 593 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~-~~s~v~~~~~np~wn~~~~~w~~ 593 (971)
|+|+|++|+||... |.+||||++.+++++ ++|+++.+ +||.|||.+.+.++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~ 53 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDP 53 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecC
Confidence 78999999999987 899999999999865 57888778 99999988766553
No 186
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.46 E-value=3.3e-07 Score=90.59 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=57.5
Q ss_pred CceEEEEEEEeecCCccCCCCCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
....|+|+|++|+||.+.| .+.+||||++.+.. ++++|+++.+++||+|||.+.+=++. .+-.+..|.+.
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~----~~l~~~~L~~~ 87 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTS----RQLDTASLSLS 87 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCH----HHhCccEEEEE
Confidence 3467999999999999999 88899999999543 46788898999999999997764432 12223457777
Q ss_pred EEecC
Q 002081 610 IFLNN 614 (971)
Q Consensus 610 i~~~~ 614 (971)
|...+
T Consensus 88 V~~~~ 92 (137)
T cd08409 88 VMQSG 92 (137)
T ss_pred EEeCC
Confidence 76544
No 187
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.46 E-value=6.1e-07 Score=86.60 Aligned_cols=71 Identities=23% Similarity=0.451 Sum_probs=55.6
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCe-eeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~-~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
.|+|+|++|++|...|..|.+||||++.++++ +.+|.++.+++||.||+.+.+ ++.. ....+.+.|+..+.
T Consensus 2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~--~v~~-----~~~~L~v~v~d~~~ 73 (120)
T cd04045 2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYV--PVTS-----PNQKITLEVMDYEK 73 (120)
T ss_pred eEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEE--EecC-----CCCEEEEEEEECCC
Confidence 58999999999999999999999999999874 567777789999999987543 3321 12357777775543
No 188
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=3.9e-08 Score=106.25 Aligned_cols=158 Identities=23% Similarity=0.360 Sum_probs=121.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEE--eCC--CCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d~ 72 (971)
.+++++..|++|.+++.++..|||++..++. .+.+|++..+++||.|+|+..... .+. ...+++.|.|.+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 3789999999999999999999999999864 247788899999999999766654 222 3678889999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEE--cccCCCC-CCCCcceEEEEEEEEEecCCCCcccCCCCCCCcCcCCCC
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHS--LQPKNKK-SKNKDCGEILLTISFSHNTSSADFNINSDPLDQLKTTES 149 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~--L~~~~~k-~~~~~~G~I~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (971)
+..++++|+..+++..+...... ....|+. +...... .....+|+|.+++.|..... .+.+.-++|.+.
T Consensus 174 ~~~~~sqGq~r~~lkKl~p~q~k-~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~-------~l~vt~iRc~~l 245 (362)
T KOG1013|consen 174 KTHNESQGQSRVSLKKLKPLQRK-SFNICLEKSLPSERADRDEDEERGAILISLAYSSTTP-------GLIVTIIRCSHL 245 (362)
T ss_pred cccccCcccchhhhhccChhhcc-hhhhhhhccCCcccccccchhhccceeeeeccCcCCC-------ceEEEEEEeeee
Confidence 99999999999999888654332 2234433 2211111 11246899999999976544 356788999999
Q ss_pred CCCCCCCCCCCCCCcccc
Q 002081 150 PKRSFSGPSNAPSPVRVE 167 (971)
Q Consensus 150 ~~~ss~g~s~~~s~~~~~ 167 (971)
++++++|+|+++......
T Consensus 246 ~ssDsng~sDpyvS~~l~ 263 (362)
T KOG1013|consen 246 ASSDSNGYSDPYVSQRLS 263 (362)
T ss_pred eccccCCCCCccceeecC
Confidence 999999999998876654
No 189
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.46 E-value=4.1e-07 Score=89.36 Aligned_cols=76 Identities=29% Similarity=0.447 Sum_probs=57.2
Q ss_pred ceEEEEEEEeecCCccCCCCCCCCCeEEEEeC--C---eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEE
Q 002081 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--G---KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRI 610 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~--~---~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i 610 (971)
...|+|+|++|++|.++|..|.+||||++.+. + ++++|.++.+++||.|||.+.+-++.+. .....+.+.+
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~----~~~~~l~~~v 88 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPEN----VDNVSLIIAV 88 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHH----hCCCEEEEEE
Confidence 45799999999999999999999999999962 2 3567888889999999998776543311 1122366777
Q ss_pred EecCC
Q 002081 611 FLNNT 615 (971)
Q Consensus 611 ~~~~~ 615 (971)
+..+.
T Consensus 89 ~d~~~ 93 (134)
T cd08403 89 VDYDR 93 (134)
T ss_pred EECCC
Confidence 75443
No 190
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.45 E-value=2.1e-07 Score=92.14 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=58.7
Q ss_pred ceEEEEEEEeecCCccCCCCCCCCCeEEEEeC---C---eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---G---KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~---~---~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
.-.|+|+|++|+||.++|.+|.+||||++.+. + .+++|+++.+++||+|||.+.+=++. .+-.+..|.+.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~----~~l~~~~L~~~ 89 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL----FQLSEVTLMFS 89 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH----HHhCccEEEEE
Confidence 35799999999999999999999999999863 2 25689999999999999997665543 12233448888
Q ss_pred EEecC
Q 002081 610 IFLNN 614 (971)
Q Consensus 610 i~~~~ 614 (971)
|...+
T Consensus 90 V~~~~ 94 (138)
T cd08408 90 VYNKR 94 (138)
T ss_pred EEECC
Confidence 87554
No 191
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=98.45 E-value=7.4e-07 Score=86.76 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=41.2
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCee-eeeecccccCCCCCcccceE
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNDLADV 590 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~-~~s~v~~~~~np~wn~~~~~ 590 (971)
.|+|+|++|+||++. +.+||||++.+++++ .+|++ .+++||.|||.+.+
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f 54 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVF 54 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEE
Confidence 489999999999875 478999999999855 56777 56999999987654
No 192
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.44 E-value=4.9e-07 Score=89.04 Aligned_cols=75 Identities=28% Similarity=0.427 Sum_probs=57.4
Q ss_pred ceEEEEEEEeecCCccCCCCCCCCCeEEEEe--CC---eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEE
Q 002081 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTC--NG---KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRI 610 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~--~~---~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i 610 (971)
.-.|+|+|++|+||.++|..|.+||||++.+ ++ .+++|+++.+++||.|||.+.+=++.+ +.....+.+.|
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~----~~~~~~l~~~v 89 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE----RLRETTLIITV 89 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH----HhCCCEEEEEE
Confidence 3569999999999999999999999999987 32 356788889999999999876644331 12234477777
Q ss_pred EecC
Q 002081 611 FLNN 614 (971)
Q Consensus 611 ~~~~ 614 (971)
...+
T Consensus 90 ~d~~ 93 (136)
T cd08405 90 MDKD 93 (136)
T ss_pred EECC
Confidence 7554
No 193
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.38 E-value=1e-06 Score=83.84 Aligned_cols=70 Identities=29% Similarity=0.529 Sum_probs=55.3
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCCee-eeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~-~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
|+|+|++|++|...|..|.+||||++.+++++ .+|+++.+++||.|||.+.+=++- .....+.+.|+..+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~------~~~~~l~~~v~d~~ 71 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPS------RVRAVLKVEVYDWD 71 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEecc------CCCCEEEEEEEeCC
Confidence 57999999999999999999999999998744 588888999999999887654432 12345677777544
No 194
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.38 E-value=1.1e-06 Score=84.76 Aligned_cols=71 Identities=24% Similarity=0.483 Sum_probs=56.3
Q ss_pred EEEEEEEeecCCccCC-CCCCCCCeEEEEeCC--eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDNLAAVD-SSGFCDPYVVFTCNG--KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d-~~g~sdPyv~~~~~~--~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
.|+|+|++|+||...| ..|.+||||++.+++ +..+|+++.+++||.|||.+.+ .+. ..+..+.+.|+..+
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~--~v~-----~~~~~l~~~v~d~~ 75 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYI--LVN-----SLTEPLNLTVYDFN 75 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEE--EeC-----CCCCEEEEEEEecC
Confidence 5899999999999876 467899999999988 7788888899999999988654 332 12345888888654
Q ss_pred C
Q 002081 615 T 615 (971)
Q Consensus 615 ~ 615 (971)
.
T Consensus 76 ~ 76 (124)
T cd04044 76 D 76 (124)
T ss_pred C
Confidence 3
No 195
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.38 E-value=8e-07 Score=86.27 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=57.5
Q ss_pred CceEEEEEEEeecCCccCCCCCCCCCeEEEE---eCCeeeeeecccccCCCCCcccceEE-EEcCcccccccccceeEEE
Q 002081 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFT---CNGKSRTSSIKFQQCDPMWNDLADVW-IPLQGKLAQACQSKLHLRI 610 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~---~~~~~~~s~v~~~~~np~wn~~~~~w-~~l~~~~~q~~~~~l~l~i 610 (971)
.+-.|+|+|++|+||.++|.+|.+||||.+. .+.++++|+|+.. +||+|||.+.+= ++ .++-.+..|++.|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~----~~~l~~~~L~~~V 88 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVE----PEELNNMALRFRL 88 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCC----HHHhccCEEEEEE
Confidence 3367999999999999999999999999865 3457788888776 999999986543 22 2333445588888
Q ss_pred EecCC
Q 002081 611 FLNNT 615 (971)
Q Consensus 611 ~~~~~ 615 (971)
...+.
T Consensus 89 ~~~~~ 93 (124)
T cd08389 89 YGVER 93 (124)
T ss_pred EECCC
Confidence 76543
No 196
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.36 E-value=1.3e-06 Score=84.42 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=57.1
Q ss_pred eecCceEEEEEEEeecCCccCCCCCCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEEEcCcccccccccce
Q 002081 532 AQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKL 606 (971)
Q Consensus 532 ~~~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l 606 (971)
.......|+|+|++|++|.+.|..|.+||||++... .++.+|+++.+++||.||+.+.+ ..+. .++.....+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f-~~~~--~~~~~~~~l 86 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY-YGIT--EEDIQRKTL 86 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEE-cCCC--HHHhCCCEE
Confidence 333457899999999999999999999999999963 34678888899999999998644 1120 112222346
Q ss_pred eEEEEec
Q 002081 607 HLRIFLN 613 (971)
Q Consensus 607 ~l~i~~~ 613 (971)
.+.++..
T Consensus 87 ~~~v~d~ 93 (123)
T cd04035 87 RLLVLDE 93 (123)
T ss_pred EEEEEEc
Confidence 6666643
No 197
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=98.36 E-value=1.3e-06 Score=85.02 Aligned_cols=69 Identities=25% Similarity=0.446 Sum_probs=56.2
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCe-eeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~-~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
.|.|+|++|+ |...|..+.+||||++.++++ +.+|.++.+++||.|||.+.+-+. ....+.+.|+..+.
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--------~~~~l~~~V~d~~~ 72 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--------PQSTLEFKVWSHHT 72 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--------CCCEEEEEEEeCCC
Confidence 5889999998 666677899999999999998 788889899999999998876542 12458888886554
No 198
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.35 E-value=1.4e-06 Score=83.99 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=56.5
Q ss_pred ceEEEEEEEeecCCccCC-CCCCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 536 GWLLTVALIKGDNLAAVD-SSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d-~~g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
.-.|+|+|++|+||.++| ..|.+||||++... ..+++|.++.+++||.|||.+.+=++. .+-.+..+.+.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~----~~l~~~~l~i~ 88 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISK----SQLETRTLQLS 88 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCH----HHhCCCEEEEE
Confidence 357999999999999999 78999999999862 246788888999999999987653322 11223457777
Q ss_pred EEecC
Q 002081 610 IFLNN 614 (971)
Q Consensus 610 i~~~~ 614 (971)
++..+
T Consensus 89 v~d~~ 93 (123)
T cd08521 89 VWHHD 93 (123)
T ss_pred EEeCC
Confidence 77543
No 199
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.35 E-value=9e-07 Score=85.35 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=56.6
Q ss_pred CceEEEEEEEeecCCccCC-CCCCCCCeEEEEe---CCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEE
Q 002081 535 DGWLLTVALIKGDNLAAVD-SSGFCDPYVVFTC---NGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRI 610 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d-~~g~sdPyv~~~~---~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i 610 (971)
..-.|+|+|++|+||.++| .+|.+||||++.+ +.+.++|.++.+++||.|||.+.+=++.. +.....+.+.|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~----~l~~~~l~i~v 87 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFK----ELQRRTLRLSV 87 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHH----HhcccEEEEEE
Confidence 3467999999999999999 7899999999986 45667888989999999999865544321 11123466666
Q ss_pred Eec
Q 002081 611 FLN 613 (971)
Q Consensus 611 ~~~ 613 (971)
+..
T Consensus 88 ~d~ 90 (123)
T cd08390 88 YDV 90 (123)
T ss_pred EEC
Confidence 643
No 200
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=98.33 E-value=1e-06 Score=87.17 Aligned_cols=55 Identities=24% Similarity=0.464 Sum_probs=48.5
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeC----CeeeeeecccccCCCCCcccceEEEEc
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN----GKSRTSSIKFQQCDPMWNDLADVWIPL 594 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~----~~~~~s~v~~~~~np~wn~~~~~w~~l 594 (971)
|+|.|++|+||..+ .+|.+||||++.++ +++++|.++.+++||.|||.+.+=+..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~ 59 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccc
Confidence 67999999999999 78999999999998 788899998999999999886654433
No 201
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=98.32 E-value=6.2e-07 Score=85.62 Aligned_cols=48 Identities=15% Similarity=0.320 Sum_probs=40.4
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEE
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVW 591 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w 591 (971)
|+|+|++|+||. |.+||||++..++ .+.||+++.+|+||+|||.+.+=
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~ 53 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE 53 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE
Confidence 689999999995 5699999998753 34688888999999999987653
No 202
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=98.32 E-value=1.2e-06 Score=84.92 Aligned_cols=76 Identities=17% Similarity=0.335 Sum_probs=57.4
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCC-eeeeeeccc-ccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-KSRTSSIKF-QQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-~~~~s~v~~-~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
.|+|+|++|++|...|..|.+||||++++++ ++++|.+.. .+.||.|||.+.+=++- ...+.....+.+.|+..+.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~--~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDE--RLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcCh--HhcccCccEEEEEEEECCC
Confidence 3889999999999999999999999999998 888888865 68999999876543322 1111224457777775543
No 203
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.31 E-value=1.2e-06 Score=85.63 Aligned_cols=63 Identities=24% Similarity=0.354 Sum_probs=53.2
Q ss_pred ceeeecCceEEEEEEEeecCCccCCCCCCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEE
Q 002081 529 GVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVW 591 (971)
Q Consensus 529 ~~~~~~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w 591 (971)
.+++.-++-.|+|+|++|+||...|.+|.+||||.+.+. .++.+|.++.+++||.||+.+.+=
T Consensus 5 ~~~~~~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~ 72 (131)
T cd04026 5 YLKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72 (131)
T ss_pred EEEEEECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe
Confidence 345566677899999999999999999999999999985 367788888999999999876553
No 204
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.28 E-value=9.7e-07 Score=86.51 Aligned_cols=58 Identities=7% Similarity=0.069 Sum_probs=48.1
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEe--C---CeeeeeecccccC-CCCCcccceEEEEc
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTC--N---GKSRTSSIKFQQC-DPMWNDLADVWIPL 594 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~--~---~~~~~s~v~~~~~-np~wn~~~~~w~~l 594 (971)
-.|+|+|++|+||.+++..+.+||||++.+ + -+||||+++++|+ ||.|||.+.|=++.
T Consensus 14 ~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~ 77 (135)
T cd08692 14 SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ 77 (135)
T ss_pred CeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCc
Confidence 469999999999999977788899999983 2 2577899999996 59999987766655
No 205
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.27 E-value=3e-06 Score=82.05 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=51.3
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
.|.|.+++|++|...| ..||||+++|++++.+|.+... .||.|||.+.|-.. ..++.+.+.|...+
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~-------~~~~~L~v~V~dkd 68 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEIN-------RLDLGLVIELWNKG 68 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEc-------CCCCEEEEEEEeCC
Confidence 6899999999997655 4599999999999988888655 69999998776542 12333778887544
No 206
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=98.27 E-value=1.2e-06 Score=86.46 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=52.5
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeC-------------CeeeeeecccccCCCCC-cccceEEEEcCcccccccc
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCN-------------GKSRTSSIKFQQCDPMW-NDLADVWIPLQGKLAQACQ 603 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~-------------~~~~~s~v~~~~~np~w-n~~~~~w~~l~~~~~q~~~ 603 (971)
+.+|.+++|+||. +|..|.+||||++.+. +++++|.++.+++||+| ||.+.+-+.. .
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--------~ 72 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--------T 72 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--------C
Confidence 4689999999998 7889999999999974 35789999999999999 9886654421 1
Q ss_pred cceeEEEEe
Q 002081 604 SKLHLRIFL 612 (971)
Q Consensus 604 ~~l~l~i~~ 612 (971)
..+.+.|+.
T Consensus 73 ~~L~v~V~D 81 (137)
T cd08691 73 DVLEIEVKD 81 (137)
T ss_pred CEEEEEEEe
Confidence 247777764
No 207
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.24 E-value=2.8e-06 Score=75.36 Aligned_cols=72 Identities=31% Similarity=0.529 Sum_probs=58.4
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCC---eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~---~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
|+|+|++|+||...|..+..||||.+.+++ .+.+|.++..+.||.||+. +++++.. ...+. +.+.|+..+.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~--~~~~~~~---~~~~~-l~~~V~~~~~ 74 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEE--FEFPLDD---PDLDS-LSFEVWDKDS 74 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEE--EEEEESH---GCGTE-EEEEEEEETS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeee--eeeeeec---ccccc-eEEEEEECCC
Confidence 789999999999999999999999999988 7889999999999999965 5555522 22222 8888886654
Q ss_pred C
Q 002081 616 K 616 (971)
Q Consensus 616 ~ 616 (971)
.
T Consensus 75 ~ 75 (85)
T PF00168_consen 75 F 75 (85)
T ss_dssp S
T ss_pred C
Confidence 4
No 208
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.23 E-value=2.9e-06 Score=82.47 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=51.8
Q ss_pred EEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 543 LIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 543 l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
|++|+||.. ..|.+||||++.+++++++|+++.+++||+|||.+.+=+.- .. .....+.+.|...+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~---~~-~~~~~l~~~v~d~~ 67 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAG---SP-DPDESLEIVVKDYE 67 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCC---Cc-CCCCEEEEEEEECC
Confidence 689999999 78999999999999999999999999999999886544322 11 23445777777544
No 209
>PLN02352 phospholipase D epsilon
Probab=98.22 E-value=9.4e-06 Score=98.61 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=90.8
Q ss_pred EEEEEEEEeeCCCCC----CC-CCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCC-CeEEEEEEeCCCCC
Q 002081 2 KLVVRVIEARNIPAM----DQ-NGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~----d~-~g~sDPYv~v~l~~~~-~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D~d~~~ 74 (971)
+|.++|.+|+-+... .. ....||||.|.+++.+ .|| .+..||+|+|.|.+++.... ..+.|+|.|
T Consensus 11 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----- 82 (758)
T PLN02352 11 TLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----- 82 (758)
T ss_pred ceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-----
Confidence 589999999843221 11 1123999999998876 677 55679999999999996655 689999988
Q ss_pred CCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 002081 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~~~ 131 (971)
...+||.+.||+.++..++ ...+.|+++....+++. .. .+|+++++|.+...+
T Consensus 83 ~~~~ig~~~~p~~~~~~g~--~~~~~~~~~~~~~~~p~-~~-~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA--SFINGFFPLIMENGKPN-PE-LKLRFMLWFRPAELE 135 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC--cccceEEEcccCCCCCC-CC-CEEEEEEEEEEhhhC
Confidence 3679999999999997642 22689999998877654 22 699999999987554
No 210
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=98.22 E-value=2.7e-06 Score=80.42 Aligned_cols=73 Identities=16% Similarity=0.318 Sum_probs=51.9
Q ss_pred EEEEeecCCccCCCCCCCCCeEEEEeCCe------eeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 541 VALIKGDNLAAVDSSGFCDPYVVFTCNGK------SRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 541 v~l~~~~~l~~~d~~g~sdPyv~~~~~~~------~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
+-.++|++|..+|..|.+||||++.+.+. .++|+++.+++||.|| . +-+++..-........|.+.|+..+
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~--f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-P--FTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-E--EEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 34679999999999999999999987543 4788898999999999 3 4444421111112345777777655
Q ss_pred CC
Q 002081 615 TK 616 (971)
Q Consensus 615 ~~ 616 (971)
..
T Consensus 81 ~~ 82 (110)
T cd04047 81 SS 82 (110)
T ss_pred CC
Confidence 43
No 211
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=98.21 E-value=2.5e-06 Score=82.19 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=52.3
Q ss_pred EEEeecCCccCCCCCCCCCeEEEEeCCee-------eeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 542 ALIKGDNLAAVDSSGFCDPYVVFTCNGKS-------RTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 542 ~l~~~~~l~~~d~~g~sdPyv~~~~~~~~-------~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
-.++|++|...|..|.+||||++.+.+.. ++|+++.+++||+|||.+.+=+.. .....+.+.|++.+
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~------~~~~~l~~~V~d~d 78 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF------EEVQKLRFEVYDVD 78 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe------EeeeEEEEEEEEec
Confidence 35889999999999999999999987764 788898999999999886543332 11234677777655
Q ss_pred C
Q 002081 615 T 615 (971)
Q Consensus 615 ~ 615 (971)
.
T Consensus 79 ~ 79 (120)
T cd04048 79 S 79 (120)
T ss_pred C
Confidence 3
No 212
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=98.20 E-value=3.6e-06 Score=84.72 Aligned_cols=56 Identities=23% Similarity=0.159 Sum_probs=45.8
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEE-----eCCeeeeeecccccCCCCCcccceEEEEc
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFT-----CNGKSRTSSIKFQQCDPMWNDLADVWIPL 594 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~-----~~~~~~~s~v~~~~~np~wn~~~~~w~~l 594 (971)
|+|....|-+|+..|.+|.+||||++. ++.++.+|++++.|+||+|||.+.+.++-
T Consensus 6 l~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~ 66 (155)
T cd08690 6 LTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINR 66 (155)
T ss_pred EEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEecc
Confidence 444444445589999999999999997 45688899999999999999998887755
No 213
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.18 E-value=3.8e-06 Score=82.08 Aligned_cols=76 Identities=26% Similarity=0.412 Sum_probs=57.7
Q ss_pred CceEEEEEEEeecCCccCCCCCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEE
Q 002081 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLR 609 (971)
Q Consensus 535 ~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~ 609 (971)
+.-.|+|.|++|+||...|..+.+||||++...+ .+++|.++.++.||.|||.+.+.++... + ....+.+.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~-l---~~~~l~~~ 87 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ-L---EEVSLVIT 87 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH-h---CCcEEEEE
Confidence 3357999999999999999999999999999754 2557888889999999998877654421 1 23346677
Q ss_pred EEecC
Q 002081 610 IFLNN 614 (971)
Q Consensus 610 i~~~~ 614 (971)
|...+
T Consensus 88 v~d~~ 92 (134)
T cd00276 88 VVDKD 92 (134)
T ss_pred EEecC
Confidence 76444
No 214
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.16 E-value=1.9e-06 Score=113.86 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=59.0
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEEeCCe-eeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~-~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
-+|+|++++|.||. +..|.+||||+++++++ +|||+|++++.||.|||.+.+-+.- + ..+.++||-+++.+
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~---p--~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDS---P--PKGQKLHISCKSKN 2051 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecC---C--CCCCceEEEEEecC
Confidence 57999999999998 44899999999999965 8899999999999999988765544 2 23446899998655
No 215
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.16 E-value=7e-06 Score=79.53 Aligned_cols=57 Identities=21% Similarity=0.446 Sum_probs=47.5
Q ss_pred eEEEEEEEeecCCccCC--CCCCCCCeEEEEe------CCeeeeeeccccc-CCCCCcccceEEEE
Q 002081 537 WLLTVALIKGDNLAAVD--SSGFCDPYVVFTC------NGKSRTSSIKFQQ-CDPMWNDLADVWIP 593 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d--~~g~sdPyv~~~~------~~~~~~s~v~~~~-~np~wn~~~~~w~~ 593 (971)
..|+|+|++|+||..+| ..+.+||||++.+ ..++.+|.++..+ +||.|||.+.+.+.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~ 67 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT 67 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe
Confidence 36899999999999998 6889999999998 4556777776655 49999999877765
No 216
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.14 E-value=7.8e-06 Score=81.46 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=45.0
Q ss_pred ceEEEEEEEeecCCccCCCCCCCCCeEEEEeCCeee-eeecccccCCCCCcccceE
Q 002081 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSR-TSSIKFQQCDPMWNDLADV 590 (971)
Q Consensus 536 ~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~-~s~v~~~~~np~wn~~~~~ 590 (971)
...|.|.|+||++|+++| ||||.+.+++++. +|+++.++.||.|||.+.+
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f 60 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEF 60 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEe
Confidence 367999999999999987 8999999999995 8888899999999987666
No 217
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.02 E-value=3.5e-06 Score=98.54 Aligned_cols=104 Identities=20% Similarity=0.213 Sum_probs=82.2
Q ss_pred cccchhhhcccCCCCCCeeEEEEEeeEee---ecccCeeEEeecceeEEeeccCCceeEEEEeccccccccccCCccccC
Q 002081 641 PQTNSAFQKLFGLPPEEFLINDFTCHLKR---KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSM 717 (971)
Q Consensus 641 ~~~~~~f~~lF~lp~~E~Li~~f~Cal~~---~~~~~GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~k~~~~~~~~ 717 (971)
+.++++| .+|.|| |.|..+-.|.++. ..+.+||||+|++|+||.|.... .+.+++|+..|..|++.+. -+.+
T Consensus 7 r~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~-ss~~ 81 (671)
T KOG4347|consen 7 RLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDD-SSLF 81 (671)
T ss_pred hhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCc-cccc
Confidence 4678999 999999 9999999999988 45689999999999999999887 4899999999999999972 2112
Q ss_pred CCCeEEEEEeecCCcCcCCCceeeccCCceEEEEeeccChhHHHHHHHHH
Q 002081 718 GSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIMAL 767 (971)
Q Consensus 718 g~~~~~i~l~~~~~l~~~~~~~~~~~~~~~k~~F~sf~~rd~~~~~i~~~ 767 (971)
.+ -+.+.+.+...+.|..+..|+..+--+...
T Consensus 82 ~~------------------~i~~~~~~~~~~~f~~~~~r~~~~~k~~~~ 113 (671)
T KOG4347|consen 82 TQ------------------LISLFTSNMVGMRFGGLTERLKLLSKLHLP 113 (671)
T ss_pred hh------------------hhHHhhcCcceEEecchhhHHHHHHHHhch
Confidence 11 122223355689999999998877655543
No 218
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.89 E-value=6.3e-06 Score=99.88 Aligned_cols=87 Identities=29% Similarity=0.480 Sum_probs=78.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--EEeeeccCCCCCeeccEEEEEEeCC-CCeEEEEEEeCCCCCCCce
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDF 78 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~--~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~ 78 (971)
.++|+|++|-+|.+.|.+|.+|||+++.+|++. .+...+.+++||++++.|.+....+ ...|.++|||+|.+++|+.
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~ 693 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEK 693 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccch
Confidence 367999999999999999999999999999886 7788899999999999999888444 5789999999999999999
Q ss_pred eEEEEEeCcc
Q 002081 79 VGFLKIPVSR 88 (971)
Q Consensus 79 LG~v~I~l~~ 88 (971)
+|+..+.++.
T Consensus 694 iget~iDLEn 703 (1105)
T KOG1326|consen 694 IGETTIDLEN 703 (1105)
T ss_pred hhceehhhhh
Confidence 9999997754
No 219
>PLN03008 Phospholipase D delta
Probab=97.87 E-value=2.3e-05 Score=95.54 Aligned_cols=55 Identities=16% Similarity=0.452 Sum_probs=44.1
Q ss_pred CCCCCeEEEEeCCeee-eeecccccCCCCCc------------------------------------------ccceEEE
Q 002081 556 GFCDPYVVFTCNGKSR-TSSIKFQQCDPMWN------------------------------------------DLADVWI 592 (971)
Q Consensus 556 g~sdPyv~~~~~~~~~-~s~v~~~~~np~wn------------------------------------------~~~~~w~ 592 (971)
++|||||++.+++++. +|+|+.+++||+|| +..+.|+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl 154 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWF 154 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEE
Confidence 5889999999988765 78898999999999 5677888
Q ss_pred EcCccccccc--ccceeEEE
Q 002081 593 PLQGKLAQAC--QSKLHLRI 610 (971)
Q Consensus 593 ~l~~~~~q~~--~~~l~l~i 610 (971)
+|-+..+..+ +.++|+.+
T Consensus 155 ~Ll~~~~kp~k~~~kl~v~l 174 (868)
T PLN03008 155 PVLGASGKPPKAETAIFIDM 174 (868)
T ss_pred EccccCCCCCCCCcEEEEEE
Confidence 8866665554 45677776
No 220
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=1.2e-05 Score=92.53 Aligned_cols=80 Identities=20% Similarity=0.415 Sum_probs=61.7
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCCCCc
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNTKGS 618 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~~~~ 618 (971)
++++++-|.+|++.|-.|.|||||..+.+..+|+++.+.+.|||+|||.+- |.. . .+..++.+|+++.+.+..
T Consensus 297 itltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfh--fec---h--nstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 297 ITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFH--FEC---H--NSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred eEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhhee--eee---c--CCCceeEEEEecCcccHH
Confidence 566778899999999999999999999999888888889999999998754 333 1 234567788886665433
Q ss_pred cchhhhh
Q 002081 619 NVVKEYL 625 (971)
Q Consensus 619 ~~vr~~l 625 (971)
..+|++|
T Consensus 370 sklrqkl 376 (1283)
T KOG1011|consen 370 SKLRQKL 376 (1283)
T ss_pred HHHHHHh
Confidence 4444443
No 221
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.72 E-value=6.8e-05 Score=71.23 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=43.0
Q ss_pred CCCCCCCeEEEEeCCe-eeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 554 SSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 554 ~~g~sdPyv~~~~~~~-~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
.+|.+||||++.++++ .++|+++.+++||.|||.+.+.+.- .....|.+.|+..+.
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~------~~~~~l~i~v~d~~~ 65 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTD------RRKSRVTVVVKDDRD 65 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecC------cCCCEEEEEEEECCC
Confidence 3789999999999886 4588888899999999998876532 124458888876553
No 222
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.65 E-value=4e-05 Score=93.99 Aligned_cols=102 Identities=30% Similarity=0.478 Sum_probs=84.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEE---eCC-CCeEEEEEEeCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKV---EDL-KDELVISVLDEDK 72 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v---~~~-~~~L~V~V~D~d~ 72 (971)
+|.|.|.-|++|+-...+..+||||+..+.. .+++|+++++|.||.|||...... ... .+.|.++||..+.
T Consensus 1525 ~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~ 1604 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG 1604 (1639)
T ss_pred eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc
Confidence 6889999999997776677799999999953 358999999999999999988874 222 4789999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEccc
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~ 106 (971)
+..+.++|.+.|||.++... .....||.|..
T Consensus 1605 ~~en~~lg~v~i~L~~~~l~---kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1605 LLENVFLGGVNIPLLKVDLL---KESVGWYNLGA 1635 (1639)
T ss_pred eeeeeeeeeeecchhhcchh---hhhcceeeccc
Confidence 99999999999999998432 22458999974
No 223
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00013 Score=79.55 Aligned_cols=87 Identities=32% Similarity=0.476 Sum_probs=74.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCeEEEEEEeCCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~~ 73 (971)
.|.|+++++.+|..+|.+|.+|||+...+.. .+.+|.+.+++.+|.+|++|.|.+... ...+.|.|||++.-
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G 313 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIG 313 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCC
Confidence 3789999999999999999999999999852 358899999999999999999998432 47899999999987
Q ss_pred CCCceeEEEEEeCcc
Q 002081 74 FNDDFVGFLKIPVSR 88 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~ 88 (971)
...+++|-+......
T Consensus 314 ~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 314 KSNDSIGGSMLGGYR 328 (362)
T ss_pred cCccCCCcccccccc
Confidence 688898876665443
No 224
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=97.45 E-value=0.00051 Score=62.10 Aligned_cols=72 Identities=25% Similarity=0.510 Sum_probs=55.0
Q ss_pred EEEEEEEeecCCccCCCCCCCCCeEEEEeCCe---eeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecC
Q 002081 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK---SRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNN 614 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~~---~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~ 614 (971)
.|.|.|++|++|...+..+..+|||.+.+.+. .++|+++..+.||.||+.+.+=+.. .. ...+.+.|+...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~--~~----~~~l~i~v~~~~ 74 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP--PE----LAELEIEVYDKD 74 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecC--cc----cCEEEEEEEecC
Confidence 37899999999999987678999999999875 7788887888899999865543322 11 445777777554
Q ss_pred C
Q 002081 615 T 615 (971)
Q Consensus 615 ~ 615 (971)
.
T Consensus 75 ~ 75 (101)
T smart00239 75 R 75 (101)
T ss_pred C
Confidence 3
No 225
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=97.39 E-value=0.00062 Score=61.05 Aligned_cols=71 Identities=24% Similarity=0.417 Sum_probs=54.8
Q ss_pred EEEEEEeecCCccCCCCCCCCCeEEEEeCC-eeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEecCC
Q 002081 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-KSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFLNNT 615 (971)
Q Consensus 539 l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~-~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~~~~ 615 (971)
|.|.+++|++|...+..+..||||.+.+.+ +..+|.++..++||.||+.+.+=+.. . ....+++.++..+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~--~----~~~~l~i~v~~~~~ 72 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD--P----ESDTLTVEVWDKDR 72 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccC--C----CCCEEEEEEEecCC
Confidence 578999999999877788999999999998 88899998899999999876543332 1 23346666665443
No 226
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.28 E-value=0.00041 Score=66.52 Aligned_cols=100 Identities=22% Similarity=0.424 Sum_probs=75.7
Q ss_pred EEEEEEEeeCCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeeccCCCCCeeccEEEEEEe--------
Q 002081 3 LVVRVIEARNIPAMDQ-------------NGYSDPYVRLQL----GRQRFKTKVVRKSLSPSWEEEFSFKVE-------- 57 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~-------------~g~sDPYv~v~l----~~~~~rTkvi~~t~nP~WnE~F~F~v~-------- 57 (971)
|.|.|++|.+|.+.-. .-.-|+|+++.+ +++.++|+++.++--|.|+..++|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688889988854321 112579999997 357799999999999999999999873
Q ss_pred C--------CCCeEEEEEEeCCCC----------CCCceeEEEEEeCccccccCCCCCCcEEEEc
Q 002081 58 D--------LKDELVISVLDEDKY----------FNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (971)
Q Consensus 58 ~--------~~~~L~V~V~D~d~~----------~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L 104 (971)
. ....+.++||+..+- .+|-.||.+.||+.+|... ......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~--rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK--RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc--ccCccccccC
Confidence 1 035789999997752 2456899999999999863 3346889875
No 227
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.12 E-value=0.0001 Score=89.77 Aligned_cols=117 Identities=22% Similarity=0.272 Sum_probs=94.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEE----------eCCCCeEEEEEEeCCC
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKV----------EDLKDELVISVLDEDK 72 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v----------~~~~~~L~V~V~D~d~ 72 (971)
|+++|.+|+.|.+.+..+.+|||+.+...++.+.|.++.+++||.|+++..|.- ......+.++|||.+.
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr 287 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDR 287 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhh
Confidence 567888999999999999999999999999999999999999999999998873 1224678899999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 73 ~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
.+.++|+|+......-... ...-.|+++.... ..+|++++...++..
T Consensus 288 ~g~~ef~gr~~~~p~V~~~----~p~lkw~p~~rg~-----~l~gd~l~a~eliq~ 334 (1105)
T KOG1326|consen 288 SGINEFKGRKKQRPYVMVQ----CPALKWVPTMRGA-----FLDGDVLIAAELIQI 334 (1105)
T ss_pred hchHHhhcccccceEEEec----CCccceEEeeccc-----ccccchhHHHHHHhh
Confidence 9999999998775544322 3467899998543 456777777655543
No 228
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.96 E-value=0.0013 Score=61.33 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=44.2
Q ss_pred EEEEEEeecCCccCC---CCCCCCCeEEEEeCCe-eeeeecccccCCCCCcccceEEEEcC
Q 002081 539 LTVALIKGDNLAAVD---SSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNDLADVWIPLQ 595 (971)
Q Consensus 539 l~v~l~~~~~l~~~d---~~g~sdPyv~~~~~~~-~~~s~v~~~~~np~wn~~~~~w~~l~ 595 (971)
|+|+|..++||--.+ .++..||||++++++. +.+|+. +.||.|||. |=++++
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~--F~i~Vd 56 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNED--FEIPVE 56 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccce--EEEEec
Confidence 689999999999999 6888999999999988 667766 799999988 556664
No 229
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.90 E-value=0.0023 Score=62.83 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=44.4
Q ss_pred EEEEEEeecCCccCC--CCC--CCCCeEEEEeCC---eeeeeecccccCC--CCCcccceEEEEc
Q 002081 539 LTVALIKGDNLAAVD--SSG--FCDPYVVFTCNG---KSRTSSIKFQQCD--PMWNDLADVWIPL 594 (971)
Q Consensus 539 l~v~l~~~~~l~~~d--~~g--~sdPyv~~~~~~---~~~~s~v~~~~~n--p~wn~~~~~w~~l 594 (971)
|+|.|.+|+++...+ .+| +|||||+..+.+ ++.+|.|..+++| |.||+.+-+=+++
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~ 66 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDY 66 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeec
Confidence 789999999966544 467 599999999765 5678899889999 9999765554444
No 230
>PLN02964 phosphatidylserine decarboxylase
Probab=96.78 E-value=0.0017 Score=78.96 Aligned_cols=83 Identities=19% Similarity=0.421 Sum_probs=68.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcE-EEEEECCeEEEeeeccCCCCCeeccEEEEEEe-CCCCeEEEEEEeCCCCCCCceeE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPY-VRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDFVG 80 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPY-v~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~-~~~~~L~V~V~D~d~~~~d~~LG 80 (971)
+.+++++|+ ++ ..||| +.++.|.+.++|.+.++|.||+||++..|.+. ......++.|||.+.+++++.+|
T Consensus 56 ~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~ 128 (644)
T PLN02964 56 ALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVG 128 (644)
T ss_pred EEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhh
Confidence 457777776 22 46885 55567888999999999999999999999993 33456799999999999999999
Q ss_pred EEEEeCcccccc
Q 002081 81 FLKIPVSRVFDA 92 (971)
Q Consensus 81 ~v~I~l~~l~~~ 92 (971)
.+++++.++...
T Consensus 129 ~~e~~~t~f~~k 140 (644)
T PLN02964 129 YCELDLFDFVTQ 140 (644)
T ss_pred heeecHhhccHH
Confidence 999998887653
No 231
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.00093 Score=74.26 Aligned_cols=106 Identities=25% Similarity=0.358 Sum_probs=86.5
Q ss_pred EEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEE-eCCCCC
Q 002081 2 KLVVRVIEARNIPAMDQ-NGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVL-DEDKYF 74 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~-~g~sDPYv~v~l~~-----~~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~-D~d~~~ 74 (971)
.|.|.|++|++|..+.. ...++|||+|.+.. .+.+|+...++.+|.+-+...|.-..+...|.+.|| |+....
T Consensus 270 ~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd 349 (405)
T KOG2060|consen 270 DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMD 349 (405)
T ss_pred ceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccc
Confidence 57899999999977654 23689999999842 357888999999998888889988888899999999 677778
Q ss_pred CCceeEEEEEeCccccccCCCCCCcEEEEcccCCC
Q 002081 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNK 109 (971)
Q Consensus 75 ~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~ 109 (971)
++.|+|.+.+.+.+|... ......||+|.+...
T Consensus 350 ~k~fmg~aqi~l~eL~ls--~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 350 HKSFMGVAQIMLDELNLS--SSPVIGWYKLFGSSS 382 (405)
T ss_pred hHHHhhHHHHHhhhhccc--cccceeeeeccCCcc
Confidence 889999999999998432 225679999997653
No 232
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.41 E-value=0.0056 Score=71.83 Aligned_cols=84 Identities=26% Similarity=0.471 Sum_probs=69.7
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEEC--C----eEEEeeeccCCCCCeeccEEEEEE-----eCCCCeEEEEEEeCCCCCC
Q 002081 7 VIEARNIPAMDQNGYSDPYVRLQLG--R----QRFKTKVVRKSLSPSWEEEFSFKV-----EDLKDELVISVLDEDKYFN 75 (971)
Q Consensus 7 Vi~ArnL~~~d~~g~sDPYv~v~l~--~----~~~rTkvi~~t~nP~WnE~F~F~v-----~~~~~~L~V~V~D~d~~~~ 75 (971)
.++|++|..+|..+++|||..+.-- . ..++|.+++++++|.|.+ |.+.. .+.+..+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 4568999999999999999988752 2 248999999999999986 44443 3456889999999999888
Q ss_pred CceeEEEEEeCccccc
Q 002081 76 DDFVGFLKIPVSRVFD 91 (971)
Q Consensus 76 d~~LG~v~I~l~~l~~ 91 (971)
++++|++..++..+..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999998854
No 233
>PF14470 bPH_3: Bacterial PH domain
Probab=96.12 E-value=0.058 Score=49.38 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=66.4
Q ss_pred CCCCCeeEEEEEeeEeee-cccCeeEEeecceeEEeecc-CCceeEEEEeccccccccccCCccccCCCCeEEEEEeecC
Q 002081 653 LPPEEFLINDFTCHLKRK-MLLQGRLFLSARIIGFHANL-FGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGR 730 (971)
Q Consensus 653 lp~~E~Li~~f~Cal~~~-~~~~GrlYls~~~lcF~S~~-~g~~tk~~ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~~ 730 (971)
|.++|.++..+.|.+... -...|-+++|+..|-|++.- +|......|||++|.+|+..+..+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~---------------- 64 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGIL---------------- 64 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcccc----------------
Confidence 568999999999988742 34459999999999999875 666888999999999999886322
Q ss_pred CcCcCCCceeeccCCceEEEEeeccChhHHHHHHH
Q 002081 731 GMDARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIM 765 (971)
Q Consensus 731 ~l~~~~~~~~~~~~~~~k~~F~sf~~rd~~~~~i~ 765 (971)
.+.+.+.. +..++.|.++ +.+++-.+..
T Consensus 65 -----~~~i~i~~-~~~~~~i~~i-~k~~~~~~~~ 92 (96)
T PF14470_consen 65 -----GGKITIET-NGEKIKIDNI-QKGDVKEFYE 92 (96)
T ss_pred -----ccEEEEEE-CCEEEEEEEc-CHHHHHHHHH
Confidence 13344444 3368999888 5555544443
No 234
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.82 E-value=0.011 Score=53.04 Aligned_cols=85 Identities=18% Similarity=0.325 Sum_probs=63.0
Q ss_pred EEEEEEeeCCCCCCCCCCCCc--EEE--EEECC-eEEEeeeccCCCCCeeccEEEEEEe---CCCCeEEEEEEeCCCCCC
Q 002081 4 VVRVIEARNIPAMDQNGYSDP--YVR--LQLGR-QRFKTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDKYFN 75 (971)
Q Consensus 4 ~V~Vi~ArnL~~~d~~g~sDP--Yv~--v~l~~-~~~rTkvi~~t~nP~WnE~F~F~v~---~~~~~L~V~V~D~d~~~~ 75 (971)
-++|+.++||.-....| -+| |++ +++.+ -..+|++.....||.|.|+|.|.+. -..-.|.+.|++.- .+
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~--~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT--PR 78 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC--Cc
Confidence 37899999996554332 334 443 23343 3589999999999999999999982 23467999999933 46
Q ss_pred CceeEEEEEeCccccc
Q 002081 76 DDFVGFLKIPVSRVFD 91 (971)
Q Consensus 76 d~~LG~v~I~l~~l~~ 91 (971)
...||.+.+.++++-.
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 6799999999998854
No 235
>PLN02270 phospholipase D alpha
Probab=95.81 E-value=0.021 Score=70.39 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=56.8
Q ss_pred EEEEEEEeecCCccCC------------------CCCCCCCeEEEEeCCeee-eeecccc-cCCCCCc------------
Q 002081 538 LLTVALIKGDNLAAVD------------------SSGFCDPYVVFTCNGKSR-TSSIKFQ-QCDPMWN------------ 585 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d------------------~~g~sdPyv~~~~~~~~~-~s~v~~~-~~np~wn------------ 585 (971)
.|.|+++||++|..+| ..++|||||-+..++.+. +|+|+.+ ..||.||
T Consensus 9 ~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~ 88 (808)
T PLN02270 9 TLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMAS 88 (808)
T ss_pred ceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcc
Confidence 3889999999998632 136889999999998776 7777766 4699999
Q ss_pred ------------------------------ccceEEEEcCccccccc--ccceeEEE
Q 002081 586 ------------------------------DLADVWIPLQGKLAQAC--QSKLHLRI 610 (971)
Q Consensus 586 ------------------------------~~~~~w~~l~~~~~q~~--~~~l~l~i 610 (971)
+..+.|+++-+..+.-+ +.++|+++
T Consensus 89 ~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~ 145 (808)
T PLN02270 89 NIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKL 145 (808)
T ss_pred eEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEE
Confidence 67889999955544433 56888887
No 236
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.75 E-value=0.12 Score=58.58 Aligned_cols=123 Identities=18% Similarity=0.366 Sum_probs=95.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC--------CCCeEEEEEEeCC-CC
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--------LKDELVISVLDED-KY 73 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~--------~~~~L~V~V~D~d-~~ 73 (971)
+.|+|++|+|.+... ...-.+..+++++.-.|..+..+..|.||-++.+.++. ....|++++|..| .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998763 24457778889999999999999999999999999842 2468999999988 44
Q ss_pred CCCceeEEEEEeCccc---cccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEecCC
Q 002081 74 FNDDFVGFLKIPVSRV---FDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (971)
Q Consensus 74 ~~d~~LG~v~I~l~~l---~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~~ 130 (971)
+..+.+|.+.++|... ... +......||+|.+-+.+- .+...+|+|.+.......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~-~~~~~~~W~~LL~~~~~y-~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEK-NQKQKPKWYKLLSSSSKY-KKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEcccccccccc-ccccCCCeeEcccccccc-ccCCccEEEEEEEecccc
Confidence 6778999999999988 332 234688999999763321 234678999999886543
No 237
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.63 E-value=0.011 Score=66.37 Aligned_cols=119 Identities=18% Similarity=0.342 Sum_probs=88.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE---C--CeEEEeeeccCCCCCeeccEEEEEEeC---C---------CCeEEE
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL---G--RQRFKTKVVRKSLSPSWEEEFSFKVED---L---------KDELVI 65 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l---~--~~~~rTkvi~~t~nP~WnE~F~F~v~~---~---------~~~L~V 65 (971)
|.+.|+++.+++........|-|++++. + .++.+|.+++.+.+|.|+|.|.+.+.. . ...+.|
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf 448 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF 448 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence 4566778888766543334577888875 2 346789999999999999999999843 1 247899
Q ss_pred EEEeCCCC-CCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 66 SVLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 66 ~V~D~d~~-~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
++|+...| ..|.++|.+.+.+..|. +.......++|.+.. ..+.|.|.+.+....-
T Consensus 449 eifhkggf~rSdkl~gt~nikle~Le---n~cei~e~~~l~DGR----K~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 449 EIFHKGGFNRSDKLTGTGNIKLEILE---NMCEICEYLPLKDGR----KAVGGKLEVKVRIRQP 505 (523)
T ss_pred EEeeccccccccceeceeeeeehhhh---cccchhhceeccccc----cccCCeeEEEEEEecc
Confidence 99998876 56889999999998883 333455677887544 2578999999988654
No 238
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=95.42 E-value=0.02 Score=66.29 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=55.0
Q ss_pred EEEEEEEeecCCccCCC-CCCCCCeEEEEeCCeeeeeecccccCCCCCcccceEEEEcCcccccccccceeEEEEe
Q 002081 538 LLTVALIKGDNLAAVDS-SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQSKLHLRIFL 612 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~-~g~sdPyv~~~~~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~~~l~l~i~~ 612 (971)
.|.|.++.|++|+.||- +.+.|.||.++++..+.|+.|-.++|||+||- -||+.+=--+.--++-|.+|+.+
T Consensus 4 kl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wns---dwfkfevddadlqdeplqi~lld 76 (1169)
T KOG1031|consen 4 KLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNS---DWFKFEVDDADLQDEPLQIRLLD 76 (1169)
T ss_pred cceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccc---cceEEecChhhhccCCeeEEEec
Confidence 46789999999999995 78899999999999999999988999999993 26554322222223346666653
No 239
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.35 E-value=0.033 Score=67.73 Aligned_cols=117 Identities=22% Similarity=0.336 Sum_probs=83.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeEEEeeeccC-CCCCeecc-EEEEEE--eCCCCeEEEEEEeC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-------RQRFKTKVVRK-SLSPSWEE-EFSFKV--EDLKDELVISVLDE 70 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~-------~~~~rTkvi~~-t~nP~WnE-~F~F~v--~~~~~~L~V~V~D~ 70 (971)
+|.|+||+|.-|..++. ..||.|.+- ...++|+++.. +.||+|+| .|.|.- -+.-..|+|.||++
T Consensus 704 t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred eEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 68999999999987664 379999983 23478888886 69999997 478874 22237899999997
Q ss_pred CCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEecCCCCcc
Q 002081 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSSADF 134 (971)
Q Consensus 71 d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~~~~~~ 134 (971)
.. .+||+-.+|+..+.. +...+.|.+....+ .....|.+.+.+.....+...
T Consensus 780 gg----K~ig~RIlpvd~l~~------GYrhv~LRse~Nqp--l~lp~Lfv~i~~kdyvpd~~~ 831 (1189)
T KOG1265|consen 780 GG----KFIGQRILPVDGLNA------GYRHVCLRSESNQP--LTLPALFVYIVLKDYVPDDLS 831 (1189)
T ss_pred CC----ceeeeeccchhcccC------cceeEEecCCCCCc--cccceeEEEEEeeccCCchhh
Confidence 65 699999999998833 56777887655432 223566666665544444433
No 240
>PLN02223 phosphoinositide phospholipase C
Probab=95.16 E-value=0.06 Score=63.96 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=42.8
Q ss_pred eEEEEEEEeecCCcc-----CCCCCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEEEEc
Q 002081 537 WLLTVALIKGDNLAA-----VDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVWIPL 594 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~-----~d~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w~~l 594 (971)
-.|+|+|+.|..+.. .+.....||||.+...| .+++|.|+.++.||+|||.+.+=+..
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~ 476 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTY 476 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEc
Confidence 469999999998751 13334579999999544 34456788899999999987765544
No 241
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=94.54 E-value=2.1 Score=43.35 Aligned_cols=147 Identities=13% Similarity=0.174 Sum_probs=104.4
Q ss_pred eeEEecChhhhhcccccCCCcccHHHHHHcCCcceeeccccccCCCCceEEEEEEEeccc-------cCC-CceEEEEEE
Q 002081 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN-------KLI-KATKGFEEQ 328 (971)
Q Consensus 257 d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~-------~~~-k~~~~te~q 328 (971)
...|++++++++.++.++ .|++..++..+..+.....-..+.+ ..+.++.-..+.. +.+ .....++++
T Consensus 4 ~~~~~~~~~~v~~~~~d~--~y~~~r~~~~g~~~~~~~~~~~~~~--g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDE--DYWEARCAALGADNAEVESFEVDGD--GVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcCH--HHHHHHHHHcCCCCceEEEEEEcCC--eEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 467899999999999975 5999999999986666665433322 3333333333321 233 467778888
Q ss_pred EEEecCCCeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHHH
Q 002081 329 TYLKADGKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETY 408 (971)
Q Consensus 329 ~~~~~d~~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~~ 408 (971)
+..-.++..+....++..+++| ..+.-.+.+.+ ....|++.+...++= +=.++-|+||+-+..-+...+
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~------~~~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~ 148 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGAP----VSISGTMRLRP------DGGGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLL 148 (159)
T ss_pred EEecCCCCeEEEEEEEEecCce----EEEEEEEEEec------CCCCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHH
Confidence 8844467778877777777555 56788888883 567788888777632 225899999999999998888
Q ss_pred HHHHHHHhhc
Q 002081 409 EQFATFLSQT 418 (971)
Q Consensus 409 ~~~~~~l~~~ 418 (971)
..-.+...+.
T Consensus 149 ~~e~~~~~~w 158 (159)
T PF10698_consen 149 EAEQEFTAEW 158 (159)
T ss_pred HHHHHHHHhh
Confidence 8877776654
No 242
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.44 E-value=0.59 Score=47.11 Aligned_cols=125 Identities=23% Similarity=0.265 Sum_probs=85.2
Q ss_pred EEEEEEEeeCCCCCCC--CCCCCcE--EEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC--------------CCeEE
Q 002081 3 LVVRVIEARNIPAMDQ--NGYSDPY--VRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL--------------KDELV 64 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~--~g~sDPY--v~v~l~~~~~rTkvi~~t~nP~WnE~F~F~v~~~--------------~~~L~ 64 (971)
|++.|+.++-...--. .+..+.- +-+.+++++++|+.+..+.+|.++|.|.|++... ...|+
T Consensus 11 L~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pih 90 (156)
T PF15627_consen 11 LHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIH 90 (156)
T ss_pred EEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceE
Confidence 6788888763321110 0233333 3344579999999999999999999999999321 35788
Q ss_pred EEEEeCCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEecC
Q 002081 65 ISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNT 129 (971)
Q Consensus 65 V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~~ 129 (971)
+.|.-.|..+...++|.-.+....+...+... ...-..|....... ....|-|.+++.+.|..
T Consensus 91 ivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~-~~~~vEL~G~~~e~-kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 91 IVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS-TSFTVELCGVGPES-KVPVGILDLRLELLPNL 153 (156)
T ss_pred EEEEEecCCCceEeeeeceehHHHHhccCCCc-cceeEEEeccCCCC-ccceeEEEEEEEeecCC
Confidence 88888887666789999999888887644321 13334455443322 24689999999998764
No 243
>PLN02964 phosphatidylserine decarboxylase
Probab=93.79 E-value=0.27 Score=60.27 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHH----hcCCCC------ceeeecCceEEEEEEEeecCCccCCCCCCCCCeEE-EEeCCeeeeeecccc
Q 002081 510 FLQLISRFMQARK----QKGSDH------GVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVV-FTCNGKSRTSSIKFQ 578 (971)
Q Consensus 510 ~~~~~~~~~~~~~----~~g~d~------~~~~~~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~-~~~~~~~~~s~v~~~ 578 (971)
+-..+.||-.+++ .||+-| -+.|..=.-++.++|++|+ |+ .+|||.+ ++.|.|.-+|++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~ 89 (644)
T PLN02964 17 LRQKLQKFRIRRRHLRCSRGSSSGSVSQRAVSAEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDS 89 (644)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCccccccceecccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccc
Confidence 3344555554443 554333 3444444467889999998 66 4799854 568999999999999
Q ss_pred cCCCCCcccceEEE
Q 002081 579 QCDPMWNDLADVWI 592 (971)
Q Consensus 579 ~~np~wn~~~~~w~ 592 (971)
|+||+||+...+-+
T Consensus 90 ~~~p~~~~~~~~~~ 103 (644)
T PLN02964 90 TDKPVWNSEKKLLL 103 (644)
T ss_pred cCCcccchhhceEe
Confidence 99999997665543
No 244
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=93.38 E-value=2.9 Score=42.39 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=95.4
Q ss_pred cccccCChhheeeecCCChhHHHHHHHcCcccceeccccccCCCceeEEEEEEEee-cccC------CccccCceEE-EE
Q 002081 811 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDK-CISR------YRGEVTSTQQ-KS 882 (971)
Q Consensus 811 ~~~~pisv~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~~sY~~~~-~l~p------~g~~vt~~Qq-k~ 882 (971)
+..+|+|++.++.+|.|..|.+..++..|..+..+..-..+..+ ....+.-.++. .+ | .++.+.-+|. .+
T Consensus 4 ~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~l-P~~~~k~v~~~l~v~~~e~w 81 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKL-PSAARKFVGGDLRVTRTETW 81 (159)
T ss_pred EEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhC-CHHHHHhcCCCeEEEEEEEE
Confidence 34689999999999999999888888887656566555433333 33333333332 11 2 1222333332 22
Q ss_pred ecCCCCcEEEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHHH
Q 002081 883 PLPNGNGWLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLS 962 (971)
Q Consensus 883 ~~~~~~~~vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~~~~~~~k~l~~ 962 (971)
.-.+.+.+..+-....+++| ..+...+.++..+ .+|++.+...|.= |=.++-++||+.+.+.+.+.+..--+
T Consensus 82 ~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~~~---~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 82 TPLDDGRRTGTFTVSIPGAP----VSISGTMRLRPDG---GGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEAEQE 153 (159)
T ss_pred ecCCCCeEEEEEEEEecCce----EEEEEEEEEecCC---CCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHHHHH
Confidence 22245566666666766555 5688888888854 6899888877754 44679999999999888887776655
Q ss_pred HHHh
Q 002081 963 VIEK 966 (971)
Q Consensus 963 ~~~k 966 (971)
++.+
T Consensus 154 ~~~~ 157 (159)
T PF10698_consen 154 FTAE 157 (159)
T ss_pred HHHh
Confidence 5543
No 245
>PLN02952 phosphoinositide phospholipase C
Probab=93.04 E-value=0.29 Score=59.42 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=40.1
Q ss_pred EEEEEEEeecCCcc------CCCCCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEEEE
Q 002081 538 LLTVALIKGDNLAA------VDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVWIP 593 (971)
Q Consensus 538 ~l~v~l~~~~~l~~------~d~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w~~ 593 (971)
.|+|.|+.|.+|.. .|...-.||||++..-| .+++|+++.++.||+|||.+.+=+.
T Consensus 471 ~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~ 537 (599)
T PLN02952 471 TLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLT 537 (599)
T ss_pred eEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEE
Confidence 59999999988742 12223349999998543 5667777788899999987665333
No 246
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=92.96 E-value=0.54 Score=48.50 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=48.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEE--eCC--CCeEEEEEEeCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDED 71 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l--~~~~----~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d 71 (971)
+++|+|+.+.+|... ....+-|+.+.+ |++. ..|+.+.-+.++.|||.+.|++ .+. ...|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 478999999999862 233566777655 4432 4565555457799999999987 333 478999999865
Q ss_pred C
Q 002081 72 K 72 (971)
Q Consensus 72 ~ 72 (971)
.
T Consensus 87 ~ 87 (173)
T cd08693 87 K 87 (173)
T ss_pred c
Confidence 3
No 247
>PLN02230 phosphoinositide phospholipase C 4
Probab=92.73 E-value=0.32 Score=58.95 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=40.5
Q ss_pred eEEEEEEEeecCCcc------CCCCCCCCCeEEEEeCC-----eeeeeecccccCCCCCcccceEEE
Q 002081 537 WLLTVALIKGDNLAA------VDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNDLADVWI 592 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~------~d~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~wn~~~~~w~ 592 (971)
-.|+|.|+.|.++.. .|.....||||.+..-| .+++|+|+.++.||.|||.+.+=+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l 535 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPL 535 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEE
Confidence 358999999998642 13233469999999533 445666878999999998866533
No 248
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=92.55 E-value=0.54 Score=43.00 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=43.4
Q ss_pred CCeeEEEEEeeEee---ec-cc-CeeEEeecceeEEeeccCCceeEEEEeccccccccccCCccccCCCCeEEEEEe
Q 002081 656 EEFLINDFTCHLKR---KM-LL-QGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLR 727 (971)
Q Consensus 656 ~E~Li~~f~Cal~~---~~-~~-~GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~k~~~~~~~~g~~~~~i~l~ 727 (971)
+..+...-.+.|.. ++ .. .|++|||.+.||+.-..-.....+.||+.+|..++.....+. .+|=|++.|+
T Consensus 14 E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~~--sSpKI~l~l~ 88 (89)
T PF11605_consen 14 ETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFLK--SSPKIILHLK 88 (89)
T ss_dssp --EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STTS--SS-EEEEEES
T ss_pred ceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEccccC--CCCeEEEEec
Confidence 33444555566644 44 33 599999999999986554434579999999999977764331 2445555543
No 249
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=92.52 E-value=0.12 Score=48.70 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=39.7
Q ss_pred eEEEEEeeEee-ecccCeeEEeecceeEEeec---------------cCCceeEEEEeccccccccccC
Q 002081 659 LINDFTCHLKR-KMLLQGRLFLSARIIGFHAN---------------LFGHKTNFFFLWEDIEDIQVLP 711 (971)
Q Consensus 659 Li~~f~Cal~~-~~~~~GrlYls~~~lcF~S~---------------~~g~~tk~~ip~~dI~~I~k~~ 711 (971)
++-.+.|.+-. ....+|+|.|++++|+|..+ .-.......+|++||..|.+..
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RR 70 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRR 70 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHH
Confidence 56689999987 44678999999999999976 3344566789999999998876
No 250
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=92.33 E-value=0.79 Score=46.56 Aligned_cols=84 Identities=20% Similarity=0.324 Sum_probs=58.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEE--eCC--CCeEEEEEEeCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDED 71 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l--~~~~----~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d 71 (971)
.++|+|+.|.++...+ .+|-|+.+++ |++. ..|+.+.. .++.|||-..|++ .+. ...|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 3789999999987643 4688888876 4432 34443433 6799999999987 333 478999999965
Q ss_pred CCC----CCceeEEEEEeCccc
Q 002081 72 KYF----NDDFVGFLKIPVSRV 89 (971)
Q Consensus 72 ~~~----~d~~LG~v~I~l~~l 89 (971)
.-. ....+|.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 311 224688888887663
No 251
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.01 E-value=1.2 Score=44.91 Aligned_cols=87 Identities=28% Similarity=0.424 Sum_probs=59.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeeccCCCCCeeccEEEEEE--eCC--CCeEEEEEEeCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQ----RFKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDED 71 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l--~~~----~~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d 71 (971)
.++|.+....++...+ ....+-|+.+++ |++ ...|.......++.|||...|++ .+. +..|.++||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4678888888876521 223566777765 443 23444444447899999999987 333 478999999976
Q ss_pred CCC--CCceeEEEEEeCccc
Q 002081 72 KYF--NDDFVGFLKIPVSRV 89 (971)
Q Consensus 72 ~~~--~d~~LG~v~I~l~~l 89 (971)
... .+..||.+.+++-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 533 467899999998764
No 252
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.93 E-value=0.75 Score=55.75 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=39.8
Q ss_pred EEEEEEEeecCCc----c--CCCCCCCCCeEEEEeC-----CeeeeeecccccCCCCCcccceEEEEc
Q 002081 538 LLTVALIKGDNLA----A--VDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNDLADVWIPL 594 (971)
Q Consensus 538 ~l~v~l~~~~~l~----~--~d~~g~sdPyv~~~~~-----~~~~~s~v~~~~~np~wn~~~~~w~~l 594 (971)
.|+|+|+.|.++. . .|.....||||.+..- ..+++|+++.++.||.|||.+.+=+.+
T Consensus 453 ~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~ 520 (581)
T PLN02222 453 TLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTV 520 (581)
T ss_pred eEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEc
Confidence 5899999998742 1 2223457999999964 345566666777999999876654433
No 253
>PLN02228 Phosphoinositide phospholipase C
Probab=90.36 E-value=0.77 Score=55.55 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=38.4
Q ss_pred EEEEEEEeecCCc---cCC---CCCCCCCeEEEEeCC-----eeeeeecccccCCCCC-cccceEEE
Q 002081 538 LLTVALIKGDNLA---AVD---SSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMW-NDLADVWI 592 (971)
Q Consensus 538 ~l~v~l~~~~~l~---~~d---~~g~sdPyv~~~~~~-----~~~~s~v~~~~~np~w-n~~~~~w~ 592 (971)
.|+|+|+.|.+|. +.+ .....||||.+..-| .+.+|+++..+.||.| ||.+.+=+
T Consensus 432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~ 498 (567)
T PLN02228 432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQL 498 (567)
T ss_pred eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEE
Confidence 5999999999873 122 223479999999533 4445666677799999 88766543
No 254
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=89.97 E-value=8.9 Score=37.72 Aligned_cols=117 Identities=23% Similarity=0.313 Sum_probs=75.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE---EEeeecc-CCCCCeeccEEEEEE---e-CC-----CCeEEEEEE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR---FKTKVVR-KSLSPSWEEEFSFKV---E-DL-----KDELVISVL 68 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~---~rTkvi~-~t~nP~WnE~F~F~v---~-~~-----~~~L~V~V~ 68 (971)
++.|+|.+..+++. .....|+++..++.. .+|.... .+..-.|||+|.+.+ . .. +..+.+.|+
T Consensus 8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 46789999999886 224456666666543 4444433 355678999999987 1 11 356888888
Q ss_pred eCCCCCCCceeEEEEEeCccccccCCCCCCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 69 DEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 69 D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
....-++...||.+.|+|.++.... ......-++|.... .....|++++.+...
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~~~-~~~~~~~~~l~~~~-----~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYANED-EEPITVRLLLKKCK-----KSNATLSISISLSEL 137 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhCcC-CCcEEEEEeCccCC-----CCCcEEEEEEEEEEC
Confidence 8753233368999999999997532 12234445665431 345778888888754
No 255
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.09 E-value=1.9 Score=43.89 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEE--eCC--CCeEEEEEEeCCCCCCCceeEEEEEeCccc
Q 002081 20 GYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDEDKYFNDDFVGFLKIPVSRV 89 (971)
Q Consensus 20 g~sDPYv~v~l--~~~~----~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l 89 (971)
..+|-||.+++ +++. ..|+.+.-+..+.|||-..|++ .+. ...|.|+||+.+..++...+|.+.+++-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34778888876 4432 3555555466789999999998 333 478999999987655677899999987663
No 256
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=87.75 E-value=2.2 Score=43.89 Aligned_cols=88 Identities=24% Similarity=0.381 Sum_probs=61.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeecc--C--CCCCeeccEEEEEE--eCC--CCeEEEEE
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVR--K--SLSPSWEEEFSFKV--EDL--KDELVISV 67 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l--~~~~----~rTkvi~--~--t~nP~WnE~F~F~v--~~~--~~~L~V~V 67 (971)
.+.|+|..+.+++........|-|+.+.+ |++. ..|+... + ...+.|||-..|++ .+. +..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 47899999999998776556888998876 4432 3444322 1 23577999999987 232 46899999
Q ss_pred EeCCCCC---------CCceeEEEEEeCccc
Q 002081 68 LDEDKYF---------NDDFVGFLKIPVSRV 89 (971)
Q Consensus 68 ~D~d~~~---------~d~~LG~v~I~l~~l 89 (971)
|+..... .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9866432 346788888877653
No 257
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.11 E-value=1.2 Score=54.49 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=42.0
Q ss_pred eEEEEEEEeecCCccCCCCCCCCCeEEEE-----eC-CeeeeeecccccCCCCCc-ccceEEE
Q 002081 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFT-----CN-GKSRTSSIKFQQCDPMWN-DLADVWI 592 (971)
Q Consensus 537 ~~l~v~l~~~~~l~~~d~~g~sdPyv~~~-----~~-~~~~~s~v~~~~~np~wn-~~~~~w~ 592 (971)
..|.|.|+-|+.|.... -|-.-|+|++. |+ ++.+|+.|+.+.+||+|| +.+.+=+
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI 1126 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEI 1126 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEe
Confidence 67999999999999432 45567999998 33 466677777899999999 6655443
No 258
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=86.10 E-value=1.9 Score=52.88 Aligned_cols=57 Identities=19% Similarity=0.451 Sum_probs=42.6
Q ss_pred EEEEEEEeecCCcc-CCCC---CCCCCeEEEEeCC------eeeeeecccccCCCCCcccceEEEEc
Q 002081 538 LLTVALIKGDNLAA-VDSS---GFCDPYVVFTCNG------KSRTSSIKFQQCDPMWNDLADVWIPL 594 (971)
Q Consensus 538 ~l~v~l~~~~~l~~-~d~~---g~sdPyv~~~~~~------~~~~s~v~~~~~np~wn~~~~~w~~l 594 (971)
.|+|.|+.|.++.+ .+.+ ..+||||.+..-| +.+|..|..++-||.|+|.+.+-+..
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~v 683 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSV 683 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEec
Confidence 69999999996554 3332 5699999999655 34455577799999999977666554
No 259
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=85.52 E-value=1.4 Score=48.54 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=56.1
Q ss_pred EEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCce
Q 002081 3 LVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~--~g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~ 78 (971)
|.++++++|+|..... +-+.+-||++.++.+ +.||.+......-.|.|.|+.++.. ...+.+-||.|++-.++++
T Consensus 53 L~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKL 130 (442)
T KOG1452|consen 53 LYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKL 130 (442)
T ss_pred EEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhccc
Confidence 7799999999966543 445788999999854 5677776555666899999998843 4678888999887444443
No 260
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=82.73 E-value=12 Score=34.32 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=56.8
Q ss_pred CCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCC
Q 002081 20 GYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLP 98 (971)
Q Consensus 20 g~sDPYv~v~l~~~-~~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~ 98 (971)
|..+-.+++.+++. ..+|.-.. ..+..|++.|.++++ -.+.|.|.||-.|- ....|-.-+.|.+.. .
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---RslCav~~lrLEd~~-------~ 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW---RSLCAVKFLKLEDER-------H 74 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc---hhhhhheeeEhhhhc-------c
Confidence 34678899999875 46666544 357889999999994 36889999998764 235565566666531 1
Q ss_pred cEEEEcccCCCCCCCCcceEEEEEEEE
Q 002081 99 TAWHSLQPKNKKSKNKDCGEILLTISF 125 (971)
Q Consensus 99 ~~W~~L~~~~~k~~~~~~G~I~L~i~~ 125 (971)
..-.+|. ++|.+...+.|
T Consensus 75 ~~~~~le---------pqg~l~~ev~f 92 (98)
T cd08687 75 EVQLDME---------PQLCLVAELTF 92 (98)
T ss_pred cceeccc---------cccEEEEEEEe
Confidence 1222332 46888877777
No 261
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=81.00 E-value=1.4 Score=56.04 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=55.7
Q ss_pred eeecCceEEEEEEEeecCCccCCCCCCCCCeEEEEe-----CCeeeeeecccccCCCCCcccceEEEEcCcccccccc-c
Q 002081 531 KAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC-----NGKSRTSSIKFQQCDPMWNDLADVWIPLQGKLAQACQ-S 604 (971)
Q Consensus 531 ~~~~~~~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~-----~~~~~~s~v~~~~~np~wn~~~~~w~~l~~~~~q~~~-~ 604 (971)
++.=..-.|+|.|..+|+|+-.-.+.--||||+.-+ +.-||||.|+.+|.||.+||. +-++|-+-...+ .
T Consensus 1518 sIsY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~----LvY~g~p~~~l~qR 1593 (1639)
T KOG0905|consen 1518 SISYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEM----LVYDGFPKEILQQR 1593 (1639)
T ss_pred EEEEcCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhh----eeecCCchhhhhhh
Confidence 333355789999999999966555778999999984 456778888899999999987 344443333332 4
Q ss_pred ceeEEEE
Q 002081 605 KLHLRIF 611 (971)
Q Consensus 605 ~l~l~i~ 611 (971)
.|.+.|.
T Consensus 1594 eLQ~sVl 1600 (1639)
T KOG0905|consen 1594 ELQVSVL 1600 (1639)
T ss_pred eeeeeee
Confidence 4777765
No 262
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=80.13 E-value=44 Score=32.08 Aligned_cols=137 Identities=9% Similarity=0.021 Sum_probs=71.6
Q ss_pred ccccCChhheeeecCCChhHHHHHHHcCcccceeccccccCCCceeEEEEEEEeecccCCccccCceEEEEecCCCCcEE
Q 002081 812 SVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPNGNGWL 891 (971)
Q Consensus 812 ~~~pisv~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~~sY~~~~~l~p~g~~vt~~Qqk~~~~~~~~~v 891 (971)
..+++|++.+|+++.|-....+++-. +.++ .+. ..+. ..+..+ ..++|.+...+..-......+...++
T Consensus 7 ~~i~a~~e~v~~~l~D~~~~~~w~p~--~~~~---~~~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd05018 7 FRIPAPPEEVWAALNDPEVLARCIPG--CESL---EKI--GPNE--YEATVK--LKVGPVKGTFKGKVELSDLDPPESYT 75 (144)
T ss_pred EEecCCHHHHHHHhcCHHHHHhhccc--hhhc---ccc--CCCe--EEEEEE--EEEccEEEEEEEEEEEEecCCCcEEE
Confidence 46899999999999997655444432 1221 111 1121 112222 11233332222111111122233444
Q ss_pred EEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHHHHHHhhh
Q 002081 892 VEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSVIEKEF 968 (971)
Q Consensus 892 ve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~~~~~~~k~l~~~~~kei 968 (971)
+.... .+-+..+....+|.|+.. . ++|+|.....+...+ .++.....-+-...++.+...++-+++.+
T Consensus 76 ~~~~~----~~~~~~~~~~~~~~l~~~-~--~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 76 ITGEG----KGGAGFVKGTARVTLEPD-G--GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEE----cCCCceEEEEEEEEEEec-C--CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44322 222556789999999987 3 689999999888754 34444444343344555666666666554
No 263
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=79.28 E-value=11 Score=39.23 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=43.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE---EEeeeccCCCCCeeccEEEEEE--eCC--CCeEEEEEEeCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR---FKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDED 71 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l--~~~~---~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d 71 (971)
.++|+|..+.++ ..+......-||.+.+ |++. .+|+...-+.+|.|||-+.|++ .+. ...|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 367888888643 3332222334555544 4332 3555555567899999988987 333 478999999964
No 264
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=77.53 E-value=57 Score=31.26 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=43.7
Q ss_pred CCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHHHHHHHHHHhhcc
Q 002081 352 GGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQFATFLSQTI 419 (971)
Q Consensus 352 Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~~~~~~~~l~~~~ 419 (971)
+........|.|+ +. ++.|+|.....+...+ .++.+...-.....+....++.+.|++++
T Consensus 84 ~~~~~~~~~~~l~-----~~-~~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 84 AGFVKGTARVTLE-----PD-GGGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred CceEEEEEEEEEE-----ec-CCcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567889999999 34 5679988888887654 45666666666677777778877777764
No 265
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=76.93 E-value=13 Score=36.86 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=39.5
Q ss_pred EEeeeccCC-CCCeeccEEEEEE--eC--CCCeEEEEEEeCCCCCCC----ceeEEEEEeCccc
Q 002081 35 FKTKVVRKS-LSPSWEEEFSFKV--ED--LKDELVISVLDEDKYFND----DFVGFLKIPVSRV 89 (971)
Q Consensus 35 ~rTkvi~~t-~nP~WnE~F~F~v--~~--~~~~L~V~V~D~d~~~~d----~~LG~v~I~l~~l 89 (971)
..|+...-+ .+|.|||.+.|++ .+ .+..|.|+||+.+..... ..||.+.+++-+.
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 356655555 7999999999997 33 346899999997764444 6899999998774
No 266
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=75.82 E-value=13 Score=45.47 Aligned_cols=97 Identities=16% Similarity=0.329 Sum_probs=66.1
Q ss_pred EEEeeEeeecccCeeEEee----cceeEEeecc------------CCceeEEEEeccccccccccCCccccCCCCe-EEE
Q 002081 662 DFTCHLKRKMLLQGRLFLS----ARIIGFHANL------------FGHKTNFFFLWEDIEDIQVLPPSLSSMGSPV-IVM 724 (971)
Q Consensus 662 ~f~Cal~~~~~~~GrlYls----~~~lcF~S~~------------~g~~tk~~ip~~dI~~I~k~~~~~~~~g~~~-~~i 724 (971)
.|.|-|+.+- |.+||+ .=.|||.+.- -....-+.||..||.+++|... +|=-. +++
T Consensus 520 ~F~AR~~Gkk---G~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgG----lGWK~KLvV 592 (642)
T PF11696_consen 520 EFPARYKGKK---GHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGG----LGWKGKLVV 592 (642)
T ss_pred eeeeecCCcc---ceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhccc----ccceeeEEE
Confidence 5999998864 999999 4589998751 1235669999999999999872 33322 222
Q ss_pred EEeecCCcCcCCCceee-ccCCceEEEEeeccChhHHHHHHHHH
Q 002081 725 TLRQGRGMDARHGAKTQ-DEEGRLKFHFHSFVSYNVAHRTIMAL 767 (971)
Q Consensus 725 ~l~~~~~l~~~~~~~~~-~~~~~~k~~F~sf~~rd~~~~~i~~~ 767 (971)
=+-.|.. ....|...+ +..| +.|.++....||+.|+-|.++
T Consensus 593 GWa~g~k-Ev~DGL~I~g~~~g-~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 593 GWALGEK-EVVDGLVIVGDEPG-QEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred eeecCCc-ccccceEEeccCCC-CEEEEEecchHHHHHHHHHhc
Confidence 2222111 122333333 5556 489999999999999988866
No 267
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=75.60 E-value=59 Score=33.34 Aligned_cols=84 Identities=11% Similarity=0.244 Sum_probs=59.4
Q ss_pred CCcEEEEEECCeE-EEeeeccCC--CCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCCC-C
Q 002081 22 SDPYVRLQLGRQR-FKTKVVRKS--LSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKS-L 97 (971)
Q Consensus 22 sDPYv~v~l~~~~-~rTkvi~~t--~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~-~ 97 (971)
..-|+++.++++. .+|+...-+ ..-.+||.|.+.+....+.|.++||.... ..+..|+++.+|+-......... .
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~~ 115 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDNV 115 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccCC
Confidence 4578999998754 566554433 33468999999998889999999999887 67889999999987764321111 1
Q ss_pred CcEEEEccc
Q 002081 98 PTAWHSLQP 106 (971)
Q Consensus 98 ~~~W~~L~~ 106 (971)
...|+...+
T Consensus 116 ~~~~~eFsS 124 (168)
T PF15625_consen 116 PLEEYEFSS 124 (168)
T ss_pred ceEeEEEcC
Confidence 345665543
No 268
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=74.85 E-value=15 Score=34.17 Aligned_cols=69 Identities=30% Similarity=0.459 Sum_probs=45.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEE--eCC--CCeEEEEEEeCC
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDED 71 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l--~~~~----~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d 71 (971)
+.+.+..+.+++.......++-|+.+++ |++. ..|+.+.-...+.|||-..|++ .+. ...|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4456666676655443333578888876 4432 3455444456689999999987 333 478999999854
No 269
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=71.77 E-value=21 Score=33.94 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=58.8
Q ss_pred CeeEEEEEeeEee-ecccCeeEEeecceeEEeec----cC-Cc---------eeEEEEeccccccccccCCccccCCCCe
Q 002081 657 EFLINDFTCHLKR-KMLLQGRLFLSARIIGFHAN----LF-GH---------KTNFFFLWEDIEDIQVLPPSLSSMGSPV 721 (971)
Q Consensus 657 E~Li~~f~Cal~~-~~~~~GrlYls~~~lcF~S~----~~-g~---------~tk~~ip~~dI~~I~k~~~~~~~~g~~~ 721 (971)
|+++-+..|.+-. -.-..||+=||+.+|+|.-. .+ +. .....+++++|.+|.+..--+. +.+
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr---~~a 77 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQ---NTA 77 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcc---cce
Confidence 5678889999988 44567999999999999952 11 11 1233789999999988763331 233
Q ss_pred EEEEEeecCCcCcCCCceeeccCCceEEEEeeccChhHHHHHHHHH
Q 002081 722 IVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIMAL 767 (971)
Q Consensus 722 ~~i~l~~~~~l~~~~~~~~~~~~~~~k~~F~sf~~rd~~~~~i~~~ 767 (971)
+-|++. ++ .. +|-+|-+++.+.+.+..+
T Consensus 78 lEiF~~----------------d~-~~-~f~~F~~~~~~k~vv~~l 105 (108)
T cd01201 78 LELFLA----------------SR-TS-IFFAFPDQNAVKKVVYAL 105 (108)
T ss_pred EEEEEe----------------CC-ce-EEEEeCcHHHHHHHHhhc
Confidence 444422 12 13 455688888877776543
No 270
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=71.40 E-value=35 Score=35.72 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=36.5
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCCCCC--CceeEEEEEeC
Q 002081 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN--DDFVGFLKIPV 86 (971)
Q Consensus 34 ~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~~--d~~LG~v~I~l 86 (971)
.++|.|...+.+|.|+|++.+.++. ....|.+++++...-.+ ...+|-+-+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4789999999999999999999943 35678888877442111 13455555554
No 271
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=69.11 E-value=70 Score=33.71 Aligned_cols=145 Identities=10% Similarity=0.060 Sum_probs=73.5
Q ss_pred eeEEecChhhhhcccccCCCcccHHHHHHcCCcceeeccccccCCCCceEEEEEEEeccc--cCCCceEEEEEEEEEecC
Q 002081 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN--KLIKATKGFEEQTYLKAD 334 (971)
Q Consensus 257 d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~--~~~k~~~~te~q~~~~~d 334 (971)
-.+.+++++++|..||.+ .+........ |.+...-. .. + ..++.+.|..... .+++.=-....++....+
T Consensus 53 ~~~i~~~~~~v~~~l~~d-~~~~~~Wd~~--~~~~~~i~--~~--d-~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~ 124 (208)
T cd08868 53 TGVLDCPAEFLYNELVLN-VESLPSWNPT--VLECKIIQ--VI--D-DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE 124 (208)
T ss_pred EEEEcCCHHHHHHHHHcC-ccccceecCc--ccceEEEE--Ee--c-CCcEEEEEEecCcCCCcccccceEEEEEEEecC
Confidence 346688999998777743 2222222111 11111111 11 1 1234443333322 233211112223333434
Q ss_pred CCeEEEE-EEEecCCCcCCCe-eE---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeeee--eeehhhhccHHHHHHHH
Q 002081 335 GKVFAIL-ASVSTPEVMYGGS-FK---TELLFCITPGPELSSGEQSSHLVISWRMNFLQST--MMKGMIENGARSALRET 407 (971)
Q Consensus 335 ~~~~~V~-~~~~tpdVP~Gd~-F~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss--~~K~~Iek~a~~gl~e~ 407 (971)
+.|+|. .++.-|.+|-..- -+ ....|.|++-+ .++++|++.....++..|+. |+ +.+.+..++-++
T Consensus 125 -~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~---~~~~~t~v~~~~~~Dp~G~iP~~l---vN~~~~~~~~~~ 197 (208)
T cd08868 125 -NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLP---NNPNKCNFTWLLNTDLKGWLPQYL---VDQALASVLLDF 197 (208)
T ss_pred -CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECC---CCCCceEEEEEEEECCCCCCccee---eehhhHHHHHHH
Confidence 556554 4444467775544 33 34678999432 25578999988889888873 55 555556666555
Q ss_pred HHHHHHHHh
Q 002081 408 YEQFATFLS 416 (971)
Q Consensus 408 ~~~~~~~l~ 416 (971)
+..+.+.+.
T Consensus 198 ~~~Lr~~~~ 206 (208)
T cd08868 198 MKHLRKRIA 206 (208)
T ss_pred HHHHHHHHh
Confidence 555555443
No 272
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.93 E-value=7.8 Score=44.07 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=33.7
Q ss_pred EEEEEEEeecCCccCCCCC-CCCCeEEEE------eCCeeeeeecccccCCCC
Q 002081 538 LLTVALIKGDNLAAVDSSG-FCDPYVVFT------CNGKSRTSSIKFQQCDPM 583 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~d~~g-~sdPyv~~~------~~~~~~~s~v~~~~~np~ 583 (971)
-|+|++++|++|++.--.+ .++|||++- |-.++ +|+...+|++|.
T Consensus 270 ~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~-ktk~A~kT~~pl 321 (405)
T KOG2060|consen 270 DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKK-KTKSARKTLDPL 321 (405)
T ss_pred ceeEEEEecccccccCCcccccCceeEEEEcCCCceeccc-ccccccccCchh
Confidence 3789999999999987544 589999998 33344 445557888883
No 273
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=66.83 E-value=7.9 Score=46.27 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCcEEEEEEC-------------------CeEEEeeeccCCCCCeeccEEEEEE-eCCCCeEEEEEEeCCC
Q 002081 13 IPAMDQNGYSDPYVRLQLG-------------------RQRFKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDK 72 (971)
Q Consensus 13 L~~~d~~g~sDPYv~v~l~-------------------~~~~rTkvi~~t~nP~WnE~F~F~v-~~~~~~L~V~V~D~d~ 72 (971)
+.+.+..+..||-|.+... .+..+|.++.+.+||.|-+.|.+.. .+.-+.|++.++|-+.
T Consensus 2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~ 81 (529)
T KOG1327|consen 2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDS 81 (529)
T ss_pred ccccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCC
Confidence 3344556667777776552 2345899999999999998877765 3445789999999764
Q ss_pred ----CCCCceeEEEEEeCccccc
Q 002081 73 ----YFNDDFVGFLKIPVSRVFD 91 (971)
Q Consensus 73 ----~~~d~~LG~v~I~l~~l~~ 91 (971)
+...+|+|++...+..+..
T Consensus 82 ~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 82 RTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccCCcchhcccceeeeehhhhhh
Confidence 3567899999999998864
No 274
>PLN02352 phospholipase D epsilon
Probab=66.28 E-value=15 Score=45.97 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=29.9
Q ss_pred EEEEEEEeecCCccC----CCC-CCCCCeEEEEeCCeee-eeecccccCCCCCc
Q 002081 538 LLTVALIKGDNLAAV----DSS-GFCDPYVVFTCNGKSR-TSSIKFQQCDPMWN 585 (971)
Q Consensus 538 ~l~v~l~~~~~l~~~----d~~-g~sdPyv~~~~~~~~~-~s~v~~~~~np~wn 585 (971)
.|.|++.||+.+... +.. ...||||.+..++.+. +| .+.-||+||
T Consensus 11 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~ 61 (758)
T PLN02352 11 TLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWN 61 (758)
T ss_pred ceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccc
Confidence 377888888743322 111 1239999999988775 33 344599999
No 275
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=64.71 E-value=1.4e+02 Score=30.83 Aligned_cols=142 Identities=11% Similarity=0.009 Sum_probs=75.1
Q ss_pred ceeeeEEecChhhhhcccccCCCcccHHHHHHcCCcceeeccccccCCCCceEEEEEEEe-ccccCC--CceEEEEEEEE
Q 002081 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIK-AANKLI--KATKGFEEQTY 330 (971)
Q Consensus 254 ~~~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~-~~~~~~--k~~~~te~q~~ 330 (971)
+...-++++++++++.++... ....++... +.+...-.- ..++ ..+.|.. ....++ .+. ++.....
T Consensus 43 ~k~~~~i~~s~e~v~~vi~d~--e~~~~w~~~--~~~~~vie~--~~~~----~~i~~~~~~~p~pvs~Rdf-v~~~~~~ 111 (195)
T cd08876 43 FKAVAEVDASIEAFLALLRDT--ESYPQWMPN--CKESRVLKR--TDDN----ERSVYTVIDLPWPVKDRDM-VLRSTTE 111 (195)
T ss_pred EEEEEEEeCCHHHHHHHHhhh--HhHHHHHhh--cceEEEeec--CCCC----cEEEEEEEecccccCCceE-EEEEEEE
Confidence 334556789999999998743 455555552 333332221 1111 2334432 111112 122 1211112
Q ss_pred EecCCCeEEEEEEEecCCCcCCC----eeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHH
Q 002081 331 LKADGKVFAILASVSTPEVMYGG----SFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRE 406 (971)
Q Consensus 331 ~~~d~~~~~V~~~~~tpdVP~Gd----~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e 406 (971)
...+++.++|......+++|-.. .+.....|.|+ +.++++|++.....+.+.+ .+-+.+|..-+..+...
T Consensus 112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~-----~~~~~~t~vt~~~~~dp~g-~iP~~lv~~~~~~~~~~ 185 (195)
T cd08876 112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFT-----PLGNGKTRVTYQAYADPGG-SIPGWLANAFAKDAPYN 185 (195)
T ss_pred EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEE-----ECCCCeEEEEEEEEeCCCC-CCCHHHHHHHHHHHHHH
Confidence 22224455555443444466432 24555679999 5667899999999999864 45666666666666644
Q ss_pred HHHHHH
Q 002081 407 TYEQFA 412 (971)
Q Consensus 407 ~~~~~~ 412 (971)
.+..|.
T Consensus 186 ~l~~l~ 191 (195)
T cd08876 186 TLENLR 191 (195)
T ss_pred HHHHHH
Confidence 444443
No 276
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=64.05 E-value=1.2e+02 Score=31.94 Aligned_cols=150 Identities=13% Similarity=0.214 Sum_probs=87.1
Q ss_pred eeeEE-ecChhhhhcccccCCCcccHHHHH-HcCCcceeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEec
Q 002081 256 VDQMY-VIAPQDLNTLLFSPDSNFPRTWAE-EQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKA 333 (971)
Q Consensus 256 ~d~~~-~~~~~~l~~llF~~~S~f~~~~~~-~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~~~~k~~~~te~q~~~~~ 333 (971)
.--+| .++++.|+++|... .+..+... ..+...++.. ++.+ .+.+.|...+-.+++.=-..-.......
T Consensus 54 ~~~~~~~~s~~~~~~~l~D~--~~r~~Wd~~~~~~~~le~~----~~~~---~~i~y~~~~~P~P~s~RD~V~~r~~~~~ 124 (209)
T cd08870 54 VRGVFEDCTPELLRDFYWDD--EYRKKWDETVIEHETLEED----EKSG---TEIVRWVKKFPFPLSDREYVIARRLWES 124 (209)
T ss_pred EEEEEcCCCHHHHHHHHcCh--hhHhhhhhheeeEEEEEec----CCCC---cEEEEEEEECCCcCCCceEEEEEEEEEc
Confidence 34466 57999999999853 45543333 3333333321 1112 4555555444444432112212222233
Q ss_pred CCCeEE-EEEEEecCCCcCCCeeEe---EEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHHHH
Q 002081 334 DGKVFA-ILASVSTPEVMYGGSFKT---ELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYE 409 (971)
Q Consensus 334 d~~~~~-V~~~~~tpdVP~Gd~F~v---~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~~~ 409 (971)
+++.++ +..++.-|.+|-.++-+| .-+|.|++-+ .+++.|++.+.+..+- +..+=+.++...+..|+-.++.
T Consensus 125 ~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~---~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~ 200 (209)
T cd08870 125 DDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVK---GDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLK 200 (209)
T ss_pred CCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEec---CCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHH
Confidence 244444 445555568998544443 4568888311 1678899888888876 4446666777788888988888
Q ss_pred HHHHHHhhc
Q 002081 410 QFATFLSQT 418 (971)
Q Consensus 410 ~~~~~l~~~ 418 (971)
.|.+.+++|
T Consensus 201 ~l~~a~~~Y 209 (209)
T cd08870 201 KLENALRKY 209 (209)
T ss_pred HHHHHHhcC
Confidence 888888765
No 277
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=63.63 E-value=19 Score=37.36 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=32.2
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCCCC-C--CceeEEEEEeCcc
Q 002081 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF-N--DDFVGFLKIPVSR 88 (971)
Q Consensus 34 ~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~-~--d~~LG~v~I~l~~ 88 (971)
...|.+...+.+|.|+|+|.+.++. .+..|.+++++...-. + ...+|-+.+||.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3677788888999999999999943 2467999999865321 1 1578888888765
No 278
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=62.00 E-value=46 Score=35.04 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=31.1
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCC
Q 002081 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (971)
Q Consensus 34 ~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d 71 (971)
.++|.|...+.+|.|+|++.+.++. ....|.+++++..
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S 94 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRS 94 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeec
Confidence 4788888889999999999999932 3577999988754
No 279
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=61.57 E-value=1.3e+02 Score=28.25 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=19.7
Q ss_pred ceeeeEEecChhhhhcccccCCCcccHH
Q 002081 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRT 281 (971)
Q Consensus 254 ~~~d~~~~~~~~~l~~llF~~~S~f~~~ 281 (971)
+....+++++++++|+++-.++ .+.++
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~-~~~~w 29 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFG-GLHKW 29 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcC-chhhh
Confidence 4455778999999999998654 44433
No 280
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=61.30 E-value=57 Score=34.24 Aligned_cols=137 Identities=9% Similarity=0.094 Sum_probs=71.3
Q ss_pred eeeEEecChhhhhcccccCCCcccHHHHHHcCCcceeeccccc-cCCCCceEEEEEEEeccccCCCceEEEEEE-EEEec
Q 002081 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRF-ENGCESLKRDVTYIKAANKLIKATKGFEEQ-TYLKA 333 (971)
Q Consensus 256 ~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~-~~~~~~~~R~~sY~~~~~~~~k~~~~te~q-~~~~~ 333 (971)
..-++++++++++.+|+.. ++--|..+..++. +.-+ .....+.|..+...+++.=-....+ .....
T Consensus 48 ~~~~v~a~~~~v~~~l~d~-----------r~~Wd~~~~~~~vie~id-~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~ 115 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRE-----------RHLWDDDLLQWKVVETLD-EDTEVYQYVTNSMAPHPTRDYVVLRTWRTDL 115 (197)
T ss_pred EEEEeCCCHHHHHHHHHHH-----------HhccchhhheEEEEEEec-CCcEEEEEEeeCCCCCCCceEEEEEEEEecC
Confidence 4456688899998877631 2322332333221 1111 1133444554433333211111111 12223
Q ss_pred CCCeEEEEEEEecC--CCcCCCeeEe---EEEEEEecCCCCCCCCCccEEEEEEEEEEeeee--eeehhhhc---cHHHH
Q 002081 334 DGKVFAILASVSTP--EVMYGGSFKT---ELLFCITPGPELSSGEQSSHLVISWRMNFLQST--MMKGMIEN---GARSA 403 (971)
Q Consensus 334 d~~~~~V~~~~~tp--dVP~Gd~F~v---~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss--~~K~~Iek---~a~~g 403 (971)
++..|+|......| .+|- ++.++ ...|.|+ +.+++.|++.-...+.+.|+. |+=.+.-. .....
T Consensus 116 ~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~-----p~~~~~t~vty~~~~Dp~G~iP~wl~N~~~~~~~~~~~~ 189 (197)
T cd08869 116 PKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIE-----PCGSGKSRVTHICRVDLRGRSPEWYNKVYGHLCARELLR 189 (197)
T ss_pred CCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEE-----ECCCCCeEEEEEEEECCCCCCCceeecchHhHHHHHHHH
Confidence 34456655544433 6776 65544 4679999 567789999999999998873 65333332 34445
Q ss_pred HHHHHHH
Q 002081 404 LRETYEQ 410 (971)
Q Consensus 404 l~e~~~~ 410 (971)
|++.|.+
T Consensus 190 l~~~~~~ 196 (197)
T cd08869 190 IRDSFRQ 196 (197)
T ss_pred HHhhccC
Confidence 5555543
No 281
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=60.18 E-value=2e+02 Score=30.51 Aligned_cols=150 Identities=7% Similarity=-0.016 Sum_probs=79.7
Q ss_pred eeeEEecChhhhhcccccCCCccc-HHHHHHcCCcceeeccccccCCCCceEEEEEEEecccc---CCCceEEEEEEEEE
Q 002081 256 VDQMYVIAPQDLNTLLFSPDSNFP-RTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANK---LIKATKGFEEQTYL 331 (971)
Q Consensus 256 ~d~~~~~~~~~l~~llF~~~S~f~-~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~~---~~k~~~~te~q~~~ 331 (971)
..-+.++++++++.+|+...+.+. ++.....++.-++... ++ +. +.|.++... .++.=-....+...
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id-----~~---~~-i~~~~~p~~~~~~vs~RDfV~~~~~~ 120 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAIS-----DD---VS-VCRTVTPSAAMKIISPRDFVDVVLVK 120 (208)
T ss_pred EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEec-----CC---EE-EEEEecchhcCCCcCCCceEEEEEEE
Confidence 445668999999999984332332 2222222222222111 22 22 345444332 12211111122333
Q ss_pred ecCCCeEEEEEEEecC-CC-cCCCeeEeEEE-EEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHHH
Q 002081 332 KADGKVFAILASVSTP-EV-MYGGSFKTELL-FCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETY 408 (971)
Q Consensus 332 ~~d~~~~~V~~~~~tp-dV-P~Gd~F~v~~r-y~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~~ 408 (971)
..++..+++......| .. |--++.+++.+ ++..|-|. +.++++|++.-...+.+.++ +=+..|.+...+.+.++|
T Consensus 121 ~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~-~~~~~~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~~~~ 198 (208)
T cd08903 121 RYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPV-PGEPDKTQLVSFFQTDLSGY-LPQTVVDSFFPASMAEFY 198 (208)
T ss_pred ecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEEC-CCCCCceEEEEEEEeccCCC-cCHHHHHHHhhHHHHHHH
Confidence 3333344444433333 44 44577777666 44444333 45778999999999998544 346667777778887777
Q ss_pred HHHHHHHh
Q 002081 409 EQFATFLS 416 (971)
Q Consensus 409 ~~~~~~l~ 416 (971)
..|.+.++
T Consensus 199 ~~Lr~~~~ 206 (208)
T cd08903 199 NNLTKAVK 206 (208)
T ss_pred HHHHHHHh
Confidence 77766664
No 282
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=59.88 E-value=1.2e+02 Score=28.58 Aligned_cols=104 Identities=11% Similarity=-0.028 Sum_probs=51.0
Q ss_pred cccccCChhheeeecCCChhHHHHHHHcCcccceeccccccC-CCceeEEEEEEEeecccCCccccCceEEEEec-CCC-
Q 002081 811 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEK-LDVYERQIYYRFDKCISRYRGEVTSTQQKSPL-PNG- 887 (971)
Q Consensus 811 ~~~~pisv~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~-~~~~~R~~sY~~~~~l~p~g~~vt~~Qqk~~~-~~~- 887 (971)
+.++++|++.+|+++.|..-...++.. +.. ..+.... ..+..|.+.+. .| .....++.. .+.
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~--~~~---~~~~~~~~~~g~~~~~~~~-------~g---~~~~~~i~~~~~~~ 70 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPA--VAS---CELEGGGPGVGAVRTVTLK-------DG---GTVRERLLALDDAE 70 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccC--cce---EEeecCCCCCCeEEEEEeC-------CC---CEEEEEehhcCccC
Confidence 456899999999998876533344332 111 1222111 12344444433 12 112223322 222
Q ss_pred CcEEEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEe
Q 002081 888 NGWLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWL 936 (971)
Q Consensus 888 ~~~vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~ 936 (971)
..+.+.... .+.|+. .....|.++..+. ++|+|.......-.
T Consensus 71 ~~i~~~~~~--~~~~~~---~~~~~~~~~~~~~--~~t~v~~~~~~~~~ 112 (140)
T cd07821 71 RRYSYRIVE--GPLPVK---NYVATIRVTPEGD--GGTRVTWTAEFDPP 112 (140)
T ss_pred CEEEEEecC--CCCCcc---cceEEEEEEECCC--CccEEEEEEEEecC
Confidence 333332221 134443 3577899998764 57886665554443
No 283
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=59.33 E-value=31 Score=30.90 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=34.0
Q ss_pred EeeEeeecccCeeEEeecce--eEEeeccCCceeEEEEeccccccccccCC
Q 002081 664 TCHLKRKMLLQGRLFLSARI--IGFHANLFGHKTNFFFLWEDIEDIQVLPP 712 (971)
Q Consensus 664 ~Cal~~~~~~~GrlYls~~~--lcF~S~~~g~~tk~~ip~~dI~~I~k~~~ 712 (971)
.|.+++.- |.|||++++ +-+--+--+-...+.||+.+|+..+..+.
T Consensus 6 ~~~yKK~~---G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~ 53 (79)
T PF08567_consen 6 AASYKKKD---GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPE 53 (79)
T ss_dssp EEEETTEE---EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--T
T ss_pred eEEEEcCC---cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCC
Confidence 45565533 999999999 98887644434479999999999998874
No 284
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=59.28 E-value=35 Score=32.76 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=32.9
Q ss_pred eeecccCeeEEeecceeEEeeccCCceeEEEEecccccccccc
Q 002081 668 KRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVL 710 (971)
Q Consensus 668 ~~~~~~~GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~k~ 710 (971)
...+.-+|++.|-.+-+-||.+-=. +--+.|||++|+.|...
T Consensus 18 ~~g~~~yGkimiGDkaFEFyn~~n~-~dyIQIPW~eI~~V~a~ 59 (118)
T PF06115_consen 18 YLGLGKYGKIMIGDKAFEFYNDRNV-EDYIQIPWEEIDYVIAS 59 (118)
T ss_pred EecccccCeEEEcccceEeecCCCh-hhcEEeChhheeEEEEE
Confidence 3456688999999999999976332 45678999999988644
No 285
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=58.76 E-value=1.6e+02 Score=28.74 Aligned_cols=64 Identities=9% Similarity=-0.052 Sum_probs=42.6
Q ss_pred eCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeec--ccchhhhhhhhHHhHHHHHHHHHHHHHhhh
Q 002081 898 LHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKS--TRHQKRITKNIVSNLEDRLRVKLSVIEKEF 968 (971)
Q Consensus 898 ~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Ks--t~~K~~Iek~~~~~~~~~~k~l~~~~~kei 968 (971)
-.+.+.+....+...|.++..+ .+|+|.+...+...+. .+.+..|++.+ ++.++.+++-+++.+
T Consensus 79 g~~~~~~g~~~~~~~~~l~~~~---~gT~v~~~~~~~~~g~l~~l~~~~v~~~~----~~~~~~~~~~l~~~~ 144 (146)
T cd07823 79 GKDARGQGTAEATVTLRLSPAG---GGTRVTVDTDLALTGKLAQFGRGGIGDVA----GRLLAQFAANLEARL 144 (146)
T ss_pred EecCCCcceEEEEEEEEEEecC---CcEEEEEEEEEEEeeEhHHhChhHHHHHH----HHHHHHHHHHHHHHh
Confidence 3335555666888889998733 6899999999988774 45666666644 444555555555544
No 286
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=55.42 E-value=1.6e+02 Score=30.36 Aligned_cols=143 Identities=6% Similarity=-0.066 Sum_probs=73.0
Q ss_pred cccccCChhheeeecCCChhHHHHHHHcCcccceeccccccCCCceeEEEEEEEeecccCCcc-ccCceEEEEecCCCCc
Q 002081 811 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRG-EVTSTQQKSPLPNGNG 889 (971)
Q Consensus 811 ~~~~pisv~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~~sY~~~~~l~p~g~-~vt~~Qqk~~~~~~~~ 889 (971)
..+++++++.+|+++.|-....++.... .+..+-. ....+ ..+.|..-....|+.+ ...-........+.+.
T Consensus 46 ~~~i~~s~e~v~~vi~d~e~~~~w~~~~--~~~~vie--~~~~~---~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 46 VAEVDASIEAFLALLRDTESYPQWMPNC--KESRVLK--RTDDN---ERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEeCCHHHHHHHHhhhHhHHHHHhhc--ceEEEee--cCCCC---cEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 3468999999999887765555555432 2222211 11111 2333332111112211 1111122222222345
Q ss_pred EEEEEEEeeCCCCCCC----ceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHHHHHH
Q 002081 890 WLVEEVMTLHGVPLGD----YFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSVIE 965 (971)
Q Consensus 890 ~vve~~~~~~dVPyGD----~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~~~~~~~k~l~~~~~ 965 (971)
+++......+++|-.. .+.....|.|+..+. ++|+|.....+++.+ .+-+..|.+.+. .....+++.++
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~--~~t~vt~~~~~dp~g-~iP~~lv~~~~~----~~~~~~l~~l~ 191 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN--GKTRVTYQAYADPGG-SIPGWLANAFAK----DAPYNTLENLR 191 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCC--CeEEEEEEEEeCCCC-CCCHHHHHHHHH----HHHHHHHHHHH
Confidence 5554443334456332 356677899999864 799999999999964 344444444432 33445555555
Q ss_pred hh
Q 002081 966 KE 967 (971)
Q Consensus 966 ke 967 (971)
++
T Consensus 192 ~~ 193 (195)
T cd08876 192 KQ 193 (195)
T ss_pred Hh
Confidence 54
No 287
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=54.23 E-value=1e+02 Score=32.45 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=38.3
Q ss_pred CcEEEE-EEEeeCCCCCC-CceEE---EEEEEEEeCCCCCCccEEEEEEEEEEeec--ccchhhh
Q 002081 888 NGWLVE-EVMTLHGVPLG-DYFNL---HLRYQVEDSPSRPKGCLAQVYLGVAWLKS--TRHQKRI 945 (971)
Q Consensus 888 ~~~vve-~~~~~~dVPyG-D~F~V---~~R~~i~~~s~~~~~c~l~V~~~V~w~Ks--t~~K~~I 945 (971)
+.++|. ....-+..|-. ++-++ ...|.|+..+.++++|.+...+.++..++ .|+-...
T Consensus 125 ~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~ 189 (208)
T cd08868 125 NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQA 189 (208)
T ss_pred CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehh
Confidence 445544 33343566644 44444 47899999876668999999999999887 3553333
No 288
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=52.60 E-value=79 Score=32.63 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=34.1
Q ss_pred eeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCCCC-----CCCceeEEEEEeCcc
Q 002081 37 TKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY-----FNDDFVGFLKIPVSR 88 (971)
Q Consensus 37 Tkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~-----~~d~~LG~v~I~l~~ 88 (971)
+.++....+|.|+|+|.+.++. +...|.+++++-..- .....+|-+.+||.+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444444899999999999932 356799999986531 123455655555543
No 289
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.58 E-value=24 Score=33.34 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=43.1
Q ss_pred ecccCeeEEeecceeEEeeccCCceeEEEEeccccccccccCCccccCCCCeEEEEEeecCCcCcCCCceeeccCCceEE
Q 002081 670 KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKF 749 (971)
Q Consensus 670 ~~~~~GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~~~l~~~~~~~~~~~~~~~k~ 749 (971)
.+.-.|++-|...-+-||-+.- .+.-+.|||++|.+|-..- ++.-+ ..+-+|.++++| +|
T Consensus 20 g~~~~GkiliGDkgfEFYn~~n-v~k~iqipWs~i~~v~vsv-s~KK~----------------~~~f~i~td~~g--k~ 79 (122)
T COG4687 20 GFAEYGKILIGDKGFEFYNDRN-VEKFIQIPWSEINEVDVSV-SLKKW----------------GRQFSIFTDTQG--KV 79 (122)
T ss_pred ehhhcCeEEEcccceeecCCCC-hhheeEecHHHhheeheee-hhhhh----------------cceEEEEEcCCc--eE
Confidence 3445699999999999986543 3566789999999775432 11001 134556667656 79
Q ss_pred EEee
Q 002081 750 HFHS 753 (971)
Q Consensus 750 ~F~s 753 (971)
.|+|
T Consensus 80 ~FaS 83 (122)
T COG4687 80 RFAS 83 (122)
T ss_pred EEEe
Confidence 9988
No 290
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=46.37 E-value=3.5e+02 Score=27.92 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=46.5
Q ss_pred CCCeEEEE-EEEecCCCc-CCCeeE---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHHH
Q 002081 334 DGKVFAIL-ASVSTPEVM-YGGSFK---TELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETY 408 (971)
Q Consensus 334 d~~~~~V~-~~~~tpdVP-~Gd~F~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~~ 408 (971)
+++.|+|. .++..|++| -.++-+ ....|+|+ +.+++.|++.....++..++. =+..+..-+..+.-..+
T Consensus 120 ~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~-----p~~~~~t~vt~~~~~D~~G~i-P~~lvn~~~~~~~~~~~ 193 (206)
T smart00234 120 VDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIE-----PLGNGPSKVTWVSHADLKGWL-PHWLVRSLIKSGLAEFA 193 (206)
T ss_pred CCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEE-----ECCCCCeEEEEEEEEecCCCc-cceeehhhhhhhHHHHH
Confidence 45555554 466677777 344443 45689999 455567999999999998873 23333333334443334
Q ss_pred HHHHHHHhh
Q 002081 409 EQFATFLSQ 417 (971)
Q Consensus 409 ~~~~~~l~~ 417 (971)
..+...|++
T Consensus 194 ~~~~~~~~~ 202 (206)
T smart00234 194 KTWVATLQK 202 (206)
T ss_pred HHHHHHHHH
Confidence 444444443
No 291
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.18 E-value=80 Score=38.28 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=54.9
Q ss_pred chhhhcccC-CCCCCeeEEEEEeeEeeecccCeeEEeecceeEEeeccCCceeEEEEeccccccccccCCccc
Q 002081 644 NSAFQKLFG-LPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLS 715 (971)
Q Consensus 644 ~~~f~~lF~-lp~~E~Li~~f~Cal~~~~~~~GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~k~~~~~~ 715 (971)
++.....|. ||-+......|-|-+.. ...|.|+||+=.|.|.|.--+..--+-+||.=|+.|+|...+.+
T Consensus 27 ~~~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~ 97 (717)
T KOG4471|consen 27 DENLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATS 97 (717)
T ss_pred cccccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCcccc
Confidence 344677786 66555556678888877 67799999999999999866555577899999999999986654
No 292
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=45.90 E-value=31 Score=28.74 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=29.4
Q ss_pred eeEEeecceeEEeeccCCceeEEEEecccccccc
Q 002081 675 GRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQ 708 (971)
Q Consensus 675 GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~ 708 (971)
|+|++|.=.+..||..-- ...++|||-.|..|+
T Consensus 21 G~l~VTNlRiiW~s~~~~-~~NlSIgy~~i~~i~ 53 (55)
T smart00683 21 GVFFVTNLRLVWHSDTNP-RFNISVGYLQITNVR 53 (55)
T ss_pred eEEEEEeeEEEEEeCCCC-ceEEEEcceeEEEEE
Confidence 999999999999998764 788999999998774
No 293
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=44.96 E-value=31 Score=43.61 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=76.9
Q ss_pred CCcEEEEEECCeE-EEeeeccCC-CCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCCc
Q 002081 22 SDPYVRLQLGRQR-FKTKVVRKS-LSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (971)
Q Consensus 22 sDPYv~v~l~~~~-~rTkvi~~t-~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~ 99 (971)
.++|+.+.+.... .+|..+.+. .+|.|.+.|..........+.+.+-+.+.++....+|.+.+++..+..+ ....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~---~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG---HRIG 214 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc---cccc
Confidence 4889999887654 677777776 7899999988777777888999998888877688999999999998663 3467
Q ss_pred EEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 100 AWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 100 ~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
.|+++...+++.. ...-.+.+++.|.+.
T Consensus 215 ~~~~Il~~d~~~~-~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 215 GWFPILDNDGKPH-QKGSNESLRLGFTPM 242 (887)
T ss_pred ceeeeeccCCccc-cCCcccceEEeeEee
Confidence 8999887665422 112345566666554
No 294
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=44.32 E-value=1.7e+02 Score=29.60 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=53.4
Q ss_pred EEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEee-cccchhhhhhhhHHhHHHHHHH
Q 002081 895 VMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLK-STRHQKRITKNIVSNLEDRLRV 959 (971)
Q Consensus 895 ~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~K-st~~K~~Iek~~~~~~~~~~k~ 959 (971)
++.+..+=|.+++.|+.+-.....+++|+.|.+.-.+.|.-.+ ...+.++||+-+++..++.+++
T Consensus 77 ~~~t~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~k 142 (157)
T PF04707_consen 77 TTKTRNLSFSSFLSVEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAKK 142 (157)
T ss_pred EEEEEEcccCceeEEEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999989999999999999655 3458999998877766665543
No 295
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=44.21 E-value=2.5e+02 Score=29.84 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCCcEEEEE-EEeeCCC-CCCCceEE---EEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHH
Q 002081 886 NGNGWLVEE-VMTLHGV-PLGDYFNL---HLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVK 960 (971)
Q Consensus 886 ~~~~~vve~-~~~~~dV-PyGD~F~V---~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~~~~~~~k~l 960 (971)
+++.|++-. .+.-|.. |=.++.+- -+=|.+++.+.+|++|++..++.+++++ -+=|..|++..-+.+.+.+..+
T Consensus 121 ~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG-~lP~~vv~~~~~~~~~~f~~~~ 199 (204)
T cd08904 121 EGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRG-NLSRSVIEKTMPTNLVNLILDA 199 (204)
T ss_pred CCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCC-CCCHHHHHHHhHHHHHHHHHHH
Confidence 556676643 3444443 44555544 4569999998888899999999999863 3446777766655554444443
No 296
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=43.77 E-value=3.4e+02 Score=28.84 Aligned_cols=78 Identities=9% Similarity=-0.016 Sum_probs=46.7
Q ss_pred Ce-EEEEEEEecCCCcCCCe-eEe---EEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHHHHH
Q 002081 336 KV-FAILASVSTPEVMYGGS-FKT---ELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQ 410 (971)
Q Consensus 336 ~~-~~V~~~~~tpdVP~Gd~-F~v---~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~~~~ 410 (971)
+. +++..++..|++|-..- -++ ...|.|+ +.++++|++.....++..++. =+.++.+.+....-.++..
T Consensus 122 ~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~-----p~~~~~t~vt~~~~~Dp~G~I-P~~lvN~~~~~~~~~~l~~ 195 (222)
T cd08871 122 GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIR-----PTGPKGCTLTYVTQNDPKGSL-PKWVVNKATTKLAPKVMKK 195 (222)
T ss_pred CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEE-----ECCCCCEEEEEEEecCCCCCc-CHHHHHHHHHHHhHHHHHH
Confidence 44 44566777788986654 333 3468898 556788999998888887762 1122222333333344555
Q ss_pred HHHHHhhcc
Q 002081 411 FATFLSQTI 419 (971)
Q Consensus 411 ~~~~l~~~~ 419 (971)
|.+.+.++-
T Consensus 196 l~k~~~~y~ 204 (222)
T cd08871 196 LHKAALKYP 204 (222)
T ss_pred HHHHHHHHH
Confidence 555555553
No 297
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=43.65 E-value=3.7e+02 Score=28.54 Aligned_cols=129 Identities=15% Similarity=0.133 Sum_probs=64.1
Q ss_pred cccccCChhhee-eecCCChhHHHHHHHcCcccceeccccc-cCCCceeEEEEEEEeecccCCccccCceE---EEEecC
Q 002081 811 SSVLPVPMSFFM-ELFGGGELERAVMEKAGCVSYSCSSWES-EKLDVYERQIYYRFDKCISRYRGEVTSTQ---QKSPLP 885 (971)
Q Consensus 811 ~~~~pisv~~~f-~lF~d~~~~~~~~~k~g~~d~~~s~W~~-~~~~~~~R~~sY~~~~~l~p~g~~vt~~Q---qk~~~~ 885 (971)
..++++|++.+| .+|.|...... -|.++..=+. ...+... .+.|.+..+ ..++.+.+.- .++...
T Consensus 54 ~~~v~~~~~~l~~~ll~D~~~~~~-------W~~~~~~~~vi~~~~~~~-~i~Y~v~~p--~~~~pv~~RDfV~~r~~~~ 123 (209)
T cd08906 54 KAFMQCPAELVYQEVILQPEKMVL-------WNKTVSACQVLQRVDDNT-LVSYDVAAG--AAGGVVSPRDFVNVRRIER 123 (209)
T ss_pred EEEEcCCHHHHHHHHHhChhhccc-------cCccchhhhheeeccCCc-EEEEEEccc--cccCCCCCCceEEEEEEEe
Confidence 456888999998 57766542111 1111111111 1111222 344543321 1222333321 122233
Q ss_pred CCCcEEE-EEEEeeCCCC-CCCceEEE---EEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhH
Q 002081 886 NGNGWLV-EEVMTLHGVP-LGDYFNLH---LRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIV 950 (971)
Q Consensus 886 ~~~~~vv-e~~~~~~dVP-yGD~F~V~---~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~ 950 (971)
++++|++ ...+..+.+| .-++-+++ +.|.+.....++++|++.-.+.++..++ .=+..|.+...
T Consensus 124 ~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~ 192 (209)
T cd08906 124 RRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPRYLIHQSLA 192 (209)
T ss_pred cCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCHHHHHHHHH
Confidence 4556654 4444444444 45666666 5566666434568999988888888663 23444444443
No 298
>PRK10724 hypothetical protein; Provisional
Probab=42.70 E-value=1.5e+02 Score=29.97 Aligned_cols=110 Identities=10% Similarity=0.156 Sum_probs=54.5
Q ss_pred cccccCChhheeeecCCChhHHHHHHHcCcccceeccccccCCCceeEEEEEEEeecccCCccccCceEEEEecCCCCcE
Q 002081 811 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPNGNGW 890 (971)
Q Consensus 811 ~~~~pisv~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~~sY~~~~~l~p~g~~vt~~Qqk~~~~~~~~~ 890 (971)
+..+|.|++.+|++..|-.-...|.-. |....+-.. ..++ +....++ .+++-.....++..+...+..
T Consensus 20 ~~~v~~s~~~v~~lv~Dve~yp~flp~--~~~s~vl~~---~~~~--~~a~l~v-----~~~g~~~~f~srv~~~~~~~I 87 (158)
T PRK10724 20 TALVPYSAEQMYQLVNDVQSYPQFLPG--CTGSRVLES---TPGQ--MTAAVDV-----SKAGISKTFTTRNQLTSNQSI 87 (158)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhCcc--cCeEEEEEe---cCCE--EEEEEEE-----eeCCccEEEEEEEEecCCCEE
Confidence 457899999999987775433343332 222222111 1111 1122221 112222222233333333322
Q ss_pred EEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccch
Q 002081 891 LVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQ 942 (971)
Q Consensus 891 vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K 942 (971)
.+ ....| ||-. .+..|.|+..+. ++|+|...+.++| |+.++.
T Consensus 88 ~~---~~~~G-pF~~---l~g~W~f~p~~~--~~t~V~~~l~fef-~s~l~~ 129 (158)
T PRK10724 88 LM---QLVDG-PFKK---LIGGWKFTPLSQ--EACRIEFHLDFEF-TNKLIE 129 (158)
T ss_pred EE---EecCC-Chhh---ccceEEEEECCC--CCEEEEEEEEEEE-chHHHH
Confidence 22 22233 5444 899999999875 6798777777775 343333
No 299
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=41.69 E-value=2.1e+02 Score=28.88 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=35.1
Q ss_pred CCcEEEEEEEeeCCCCCC-CceEEEEE---EEEEeCCCCCCccEEEEEEEEEEeecc
Q 002081 887 GNGWLVEEVMTLHGVPLG-DYFNLHLR---YQVEDSPSRPKGCLAQVYLGVAWLKST 939 (971)
Q Consensus 887 ~~~~vve~~~~~~dVPyG-D~F~V~~R---~~i~~~s~~~~~c~l~V~~~V~w~Kst 939 (971)
+..+++......+.+|-. ++-+.+.. |.|+..+ +++|++.....++-.++.
T Consensus 114 ~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~--~~~~~vt~~~~~D~~g~i 168 (193)
T cd00177 114 GTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD--PGKTKVTYVLQVDPKGSI 168 (193)
T ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC--CCCEEEEEEEeeCCCCCc
Confidence 344445545444446655 66666644 9999984 489999999999998763
No 300
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=41.48 E-value=92 Score=31.33 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=73.3
Q ss_pred ccccCChhheeeecCCC-hhHHHHH-HHcCcccceeccccccCCCceeEEEEEEEeecccCCccccCceEEEEecCCCCc
Q 002081 812 SVLPVPMSFFMELFGGG-ELERAVM-EKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPNGNG 889 (971)
Q Consensus 812 ~~~pisv~~~f~lF~d~-~~~~~~~-~k~g~~d~~~s~W~~~~~~~~~R~~sY~~~~~l~p~g~~vt~~Qqk~~~~~~~~ 889 (971)
..++++++.||..|... .+..+++ +.-...++--++| ..+|..|.++|. + ++.....-++....|.+.
T Consensus 10 ~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdg---g~gGSIk~~~f~------~-~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 10 VEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDG---GPGGSIKKWTFG------P-GGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp EEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSS---STTT-EEEEEEE------T-TSSEEEEEEEEEEEETTT
T ss_pred EEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCC---CCCCeEEEEEec------C-CCCcceeEEEEEeecCCC
Confidence 35789999999987762 2334433 2223456666888 456899999998 2 333322335555555554
Q ss_pred EEEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhh-hHHhHHHHHHHHHHHHHhhh
Q 002081 890 WLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKN-IVSNLEDRLRVKLSVIEKEF 968 (971)
Q Consensus 890 ~vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~-~~~~~~~~~k~l~~~~~kei 968 (971)
..+.-++-=-| +.++|.+-.....+...+. .+|.++.. ++|-+.. +.. .-+...+.+..|+..++.-+
T Consensus 80 ~~~~y~viEGd-~l~~~~~~~~~~~~~~~~~--g~~v~k~t--~~Ye~~~------~~~~~p~~~~~~~~~~~K~ieayL 148 (151)
T PF00407_consen 80 KTITYTVIEGD-VLGDYKSFKSTIQKIPKGD--GGCVVKWT--IEYEKKG------EDVPPPEKYLDFAVGMFKAIEAYL 148 (151)
T ss_dssp TEEEEEEEEET-TGTTTEEEEEEEEEEEETT--SCEEEEEE--EEEEESS------TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEecc-ccccEEEEEEEEEecCCCC--CceEEEEE--EEEEecC------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 44443333334 4566666666666665444 55665544 4454422 111 22333344566666666655
Q ss_pred h
Q 002081 969 A 969 (971)
Q Consensus 969 ~ 969 (971)
+
T Consensus 149 l 149 (151)
T PF00407_consen 149 L 149 (151)
T ss_dssp H
T ss_pred h
Confidence 4
No 301
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=41.28 E-value=3.7e+02 Score=26.64 Aligned_cols=117 Identities=12% Similarity=0.130 Sum_probs=60.1
Q ss_pred ceeeeEEecChhhhhcccccCCCcccHHHHHHcCCcceeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEec
Q 002081 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKA 333 (971)
Q Consensus 254 ~~~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~~~~k~~~~te~q~~~~~ 333 (971)
+-.....++++++++.++=..+..+.+.++..-...++..+. .+..-.|.++|.-.. +.-.+ .+++...
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-----~~~GsvR~~~~~~~~----~~~~~--kE~l~~~ 71 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-----GGPGSIKLITFGPGG----KVKYV--KERIDAV 71 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecC-----CCCceEEEEEEcCCC----cceEE--EEEEEEE
Confidence 334556789999999998432223444454433333444443 223558889885333 11112 3445555
Q ss_pred CCCeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEee
Q 002081 334 DGKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQ 388 (971)
Q Consensus 334 d~~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~k 388 (971)
|.....+.-++.--|.|-..+-+-....++. +.+.+.|. |.|.+.|..
T Consensus 72 D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~-----~~~~~~t~--v~Wt~~ye~ 119 (148)
T cd07816 72 DEENKTYKYTVIEGDVLKDGYKSYKVEIKFV-----PKGDGGCV--VKWTIEYEK 119 (148)
T ss_pred cccccEEEEEEEecccccCceEEEEEEEEEE-----ECCCCCEE--EEEEEEEEE
Confidence 5544444444443344322222234455666 34556664 557777754
No 302
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=40.91 E-value=4.5e+02 Score=27.64 Aligned_cols=147 Identities=7% Similarity=0.007 Sum_probs=76.3
Q ss_pred ccc-cCChhheeeecCCChhHHHHHHHcCcccceeccccccCCCceeEEEEEEEeecccCCccccCceEEEEecCCCCcE
Q 002081 812 SVL-PVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPNGNGW 890 (971)
Q Consensus 812 ~~~-pisv~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~~sY~~~~~l~p~g~~vt~~Qqk~~~~~~~~~ 890 (971)
.+| ++|++.|++++.|..+..++....- ...+ -+..+. ...+-+.|...-|. |+...---.+.+......+.+
T Consensus 56 ~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~--~~~~--le~~~~-~~~~i~y~~~~~P~-P~s~RD~V~~r~~~~~~~~~~ 129 (209)
T cd08870 56 GVFEDCTPELLRDFYWDDEYRKKWDETVI--EHET--LEEDEK-SGTEIVRWVKKFPF-PLSDREYVIARRLWESDDRSY 129 (209)
T ss_pred EEEcCCCHHHHHHHHcChhhHhhhhhhee--eEEE--EEecCC-CCcEEEEEEEECCC-cCCCceEEEEEEEEEcCCCEE
Confidence 356 5799999998888776655555421 1111 111111 01333334332221 222210111222222223444
Q ss_pred E-EEEEEeeCCCCCCCceEE---EEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHHHHHH
Q 002081 891 L-VEEVMTLHGVPLGDYFNL---HLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSVIE 965 (971)
Q Consensus 891 v-ve~~~~~~dVPyGD~F~V---~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~~~~~~~~~~k~l~~~~~ 965 (971)
+ +.....-+.+|-.++-+| ..+|.|+....++++|++.+.+..+- +..+=+..+...+..+.-..++.|-..+.
T Consensus 130 ~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 130 VCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4 444444458887655544 57899998732347888888888876 44444555555555555566666655543
No 303
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=38.26 E-value=3.4e+02 Score=28.66 Aligned_cols=53 Identities=8% Similarity=-0.028 Sum_probs=36.2
Q ss_pred CCCcEEEEEEEeeCCCC-CCCceE---EEEEEEEEeCCCCCCccEEEEEEEEEEeec
Q 002081 886 NGNGWLVEEVMTLHGVP-LGDYFN---LHLRYQVEDSPSRPKGCLAQVYLGVAWLKS 938 (971)
Q Consensus 886 ~~~~~vve~~~~~~dVP-yGD~F~---V~~R~~i~~~s~~~~~c~l~V~~~V~w~Ks 938 (971)
++..+++......+..| .-++-+ ....|.|+..+.++++|++.-.+.++..++
T Consensus 125 ~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~ 181 (209)
T cd08905 125 GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW 181 (209)
T ss_pred CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC
Confidence 33344445555555554 345444 457899999876678999999999999776
No 304
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.54 E-value=3.2e+02 Score=26.59 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=45.5
Q ss_pred EEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeee--eeeehhhhccHHHHHHHHHHHHHHHHhhc
Q 002081 342 ASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQS--TMMKGMIENGARSALRETYEQFATFLSQT 418 (971)
Q Consensus 342 ~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~ks--s~~K~~Iek~a~~gl~e~~~~~~~~l~~~ 418 (971)
.+....+.+.+....+.+.|.++ + .+..|+|.+...+...+. .+++.+|++-+..-+ .+|.+-|+++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~-----~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~----~~~~~~l~~~ 143 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLS-----P-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLL----AQFAANLEAR 143 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEE-----e-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHH----HHHHHHHHHH
Confidence 33455567777777899999999 3 346799888888887776 467777777665555 4444444444
No 305
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=37.51 E-value=2.9e+02 Score=28.49 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=56.6
Q ss_pred cCCCeEEEEEEEecCCCcC--CCeeEeEE---EEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHH
Q 002081 333 ADGKVFAILASVSTPEVMY--GGSFKTEL---LFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRET 407 (971)
Q Consensus 333 ~d~~~~~V~~~~~tpdVP~--Gd~F~v~~---ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~ 407 (971)
.++..+++..++..|+.|- .++-++++ .|+|+ +.+++.|++.....++-.++. -+.++..-+.+++-+.
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~-----~~~~~~~~vt~~~~~D~~G~i-P~~~~n~~~~~~~~~~ 192 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIR-----PLGDGRTRVTYVSQVDPKGWI-PSWLVNMVVKSQPPNF 192 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEE-----EETTCEEEEEEEEEEESSSSS-HHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEE-----EccCCCceEEEEEEECCCCCC-hHHHHHHHHHHhHHHH
Confidence 3344555667888888885 67666554 57899 566688999888888877753 2344444556677777
Q ss_pred HHHHHHHHhhccc
Q 002081 408 YEQFATFLSQTIT 420 (971)
Q Consensus 408 ~~~~~~~l~~~~k 420 (971)
++.+.+.|+++-+
T Consensus 193 ~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 193 LKNLRKALKKQKK 205 (206)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhcc
Confidence 7888888887643
No 306
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=36.67 E-value=1.8e+02 Score=34.08 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=63.6
Q ss_pred CCcEEEEEECCeEEEeeeccC--C--CCC-ee-c--cEEEEEEe------CCC------CeEEEEEEeCCC-----C-CC
Q 002081 22 SDPYVRLQLGRQRFKTKVVRK--S--LSP-SW-E--EEFSFKVE------DLK------DELVISVLDEDK-----Y-FN 75 (971)
Q Consensus 22 sDPYv~v~l~~~~~rTkvi~~--t--~nP-~W-n--E~F~F~v~------~~~------~~L~V~V~D~d~-----~-~~ 75 (971)
+..||+|.+.+--.+|..+.- . .+| .- + ..|+++-. .+. ..|.|.||.-.. + ..
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 567999999876544544432 1 111 11 1 23444321 112 469999998543 2 45
Q ss_pred CceeEEEEEeCccccccCCCC--CCcEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 76 DDFVGFLKIPVSRVFDADNKS--LPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 76 d~~LG~v~I~l~~l~~~~~~~--~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
..+||.+.|||.---. +.+. +...|+.+-............+|||.+...+.
T Consensus 116 ~klLG~v~vpldl~~a-e~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWA-EGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ceEEEEEEEEeccccc-cCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 6799999999873322 2222 34789999866543323356899999988764
No 307
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=36.61 E-value=3.2e+02 Score=31.11 Aligned_cols=99 Identities=10% Similarity=0.219 Sum_probs=66.2
Q ss_pred CCCcEEEEEECCeEEEeeeccCCCCC--eeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCC
Q 002081 21 YSDPYVRLQLGRQRFKTKVVRKSLSP--SWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLP 98 (971)
Q Consensus 21 ~sDPYv~v~l~~~~~rTkvi~~t~nP--~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~ 98 (971)
...-|+.+..|+...+|..+.-+..- .-.+.....+..-+.+|++.+|-... -+..-||.+.+.+..=.- +..-..
T Consensus 73 ~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vkk~hIgdI~InIn~dII-dk~FPK 150 (508)
T PTZ00447 73 YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TKKVHIGQIKIDINASVI-SKSFPK 150 (508)
T ss_pred ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cceeEEEEEEecccHHHH-hccCCc
Confidence 35679999999888888665543322 22344444445557899999998775 456789999999875432 223457
Q ss_pred cEEEEcccCCCCCCCCcceEEEEEEEEE
Q 002081 99 TAWHSLQPKNKKSKNKDCGEILLTISFS 126 (971)
Q Consensus 99 ~~W~~L~~~~~k~~~~~~G~I~L~i~~~ 126 (971)
..||.+.... ...++|.|++.=.
T Consensus 151 nkWy~c~kDG-----q~~cRIqLSFhKL 173 (508)
T PTZ00447 151 NEWFVCFKDG-----QEICKVQMSFYKI 173 (508)
T ss_pred cceEEEecCC-----ceeeeEEEEehhh
Confidence 8999996432 3568888887543
No 308
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=36.49 E-value=96 Score=32.29 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.9
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCC
Q 002081 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (971)
Q Consensus 34 ~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d 71 (971)
...|.|...+.+|.|+|++.+.++. ....|.+++++-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 4788888899999999999999843 2467889998854
No 309
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=34.99 E-value=4.9e+02 Score=27.46 Aligned_cols=148 Identities=7% Similarity=-0.036 Sum_probs=75.3
Q ss_pred eeeEEecChhhhhcccccCCCcccHHHHHHcCCcceeeccccccCCCCceEEEEEEEecccc---CCCceEEEEEEEEEe
Q 002081 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANK---LIKATKGFEEQTYLK 332 (971)
Q Consensus 256 ~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~~---~~k~~~~te~q~~~~ 332 (971)
..-+.++++++++..||.+...+-++.....++.-+. ..+ ..+..+.| +.+.. .++.=-....+....
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~-------~id-~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~ 123 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQ-------RIG-KDTLITHE-VAAETAGNVVGPRDFVSVRCAKR 123 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhhhceecccchHHHHHh-------hcC-CCceEEEE-EeccCCCCccCccceEEEEEEEE
Confidence 3445688999998777754212222222111111111 111 22343334 32222 232211222344444
Q ss_pred cCCCeEEEEEEEecCCCcC-CCeeE---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHHH
Q 002081 333 ADGKVFAILASVSTPEVMY-GGSFK---TELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETY 408 (971)
Q Consensus 333 ~d~~~~~V~~~~~tpdVP~-Gd~F~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~~ 408 (971)
.++.++++..++.-|..|= -++-+ ....|.|+|- ..++++|++.....+...++ +=+..+.+.+.+.+-++|
T Consensus 124 ~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~---~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~ 199 (209)
T cd08905 124 RGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPL---AGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFA 199 (209)
T ss_pred cCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEEC---CCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHH
Confidence 4455555555555566653 34444 4467889931 11348899888888887666 344555666667776666
Q ss_pred HHHHHHHh
Q 002081 409 EQFATFLS 416 (971)
Q Consensus 409 ~~~~~~l~ 416 (971)
..|.+.|.
T Consensus 200 ~~Lr~~~~ 207 (209)
T cd08905 200 NHLRQRMA 207 (209)
T ss_pred HHHHHHHh
Confidence 66655553
No 310
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=34.90 E-value=1.2e+02 Score=31.84 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=31.6
Q ss_pred eEEEeeeccCCCCCeeccEEEEEEeC---CCCeEEEEEEeCC
Q 002081 33 QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (971)
Q Consensus 33 ~~~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d 71 (971)
....|.|...+.+|.|+|++.+.++. ....|.+++|+..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 35788888899999999999999842 3467999999865
No 311
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.73 E-value=14 Score=45.31 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=62.3
Q ss_pred CCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCCCCCc
Q 002081 21 YSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (971)
Q Consensus 21 ~sDPYv~v~l~~~~-~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~~~~~ 99 (971)
..+||+-|.+.-.. ..+.+.+.+..|.|+|+|...+. ....+.|.|+.......+.+...+.+-.+++.. ......
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~--~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKL--LALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHH--Hhhhhh
Confidence 46899999987544 45555777999999999999963 356777888876544444444444444444432 112346
Q ss_pred EEEEcccCCCCCCCCcceEEEEEEEEEec
Q 002081 100 AWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (971)
Q Consensus 100 ~W~~L~~~~~k~~~~~~G~I~L~i~~~~~ 128 (971)
.|..+. ..|+++..+.+.+.
T Consensus 104 ~w~~~~---------~~g~~~~~~~~~~~ 123 (694)
T KOG0694|consen 104 LWVLIE---------ELGTLLKPAALTGT 123 (694)
T ss_pred hccccc---------cccceeeeecccCc
Confidence 787755 34888888777643
No 312
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=32.55 E-value=5.7e+02 Score=26.91 Aligned_cols=130 Identities=10% Similarity=0.044 Sum_probs=68.2
Q ss_pred cccccCChhheeeecCCChhHHHHHHHcCcccceeccccccCCCceeEEEEEE-EeecccCCcc--ccCceEEEEecCCC
Q 002081 811 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYR-FDKCISRYRG--EVTSTQQKSPLPNG 887 (971)
Q Consensus 811 ~~~~pisv~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~~sY~-~~~~l~p~g~--~vt~~Qqk~~~~~~ 887 (971)
..++++|++.+..++.|..+...+...+.... .+. ..+. ...+.|. +..|. |++. .|...+....+.+.
T Consensus 51 e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~-~l~-----~~~~-~~~v~y~~~~~Pw-Pv~~RD~v~~~~~~~~~~~~ 122 (215)
T cd08877 51 EGEIDGPLFNLLALLNEVELYKTWVPFCIRSK-KVK-----QLGR-ADKVCYLRVDLPW-PLSNREAVFRGFGVDRLEEN 122 (215)
T ss_pred EEEecCChhHeEEEEehhhhHhhhcccceeeE-EEe-----ecCC-ceEEEEEEEeCce-EecceEEEEEEEEEeeeccC
Confidence 45789999999999888776555444321110 111 1111 1234444 22221 2222 11111222223234
Q ss_pred CcEEEEEEEeeC----------CCCCCC-c----eEEEEEEEEEeCCCCCCccEEEEEEEEEEeec---ccchhhhhhhh
Q 002081 888 NGWLVEEVMTLH----------GVPLGD-Y----FNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKS---TRHQKRITKNI 949 (971)
Q Consensus 888 ~~~vve~~~~~~----------dVPyGD-~----F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Ks---t~~K~~Iek~~ 949 (971)
+.++|......+ ++|-.+ - -.....|.|+..+. ++|++...+.++..++ .|+-+.+.+..
T Consensus 123 ~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~--~~t~v~~~~~~DP~g~~IP~~liN~~~k~~ 200 (215)
T cd08877 123 GQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISP--TKCYLRFVANVDPKMSLVPKSLLNFVARKF 200 (215)
T ss_pred CCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCC--CCeEEEEEEEcCCCcccCCHHHHHHHHHHH
Confidence 445543332221 256554 2 34667899999875 8999999999998777 45555554443
Q ss_pred H
Q 002081 950 V 950 (971)
Q Consensus 950 ~ 950 (971)
.
T Consensus 201 ~ 201 (215)
T cd08877 201 A 201 (215)
T ss_pred H
Confidence 3
No 313
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.66 E-value=5.3e+02 Score=25.05 Aligned_cols=139 Identities=12% Similarity=0.170 Sum_probs=72.0
Q ss_pred ceeeeEEecChhhhhcccccCCCcccHHHHHHcCCcceeeccccccCCCCceEEEEEEEe-ccccCCCceEEEEEEEEEe
Q 002081 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIK-AANKLIKATKGFEEQTYLK 332 (971)
Q Consensus 254 ~~~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~-~~~~~~k~~~~te~q~~~~ 332 (971)
+.+...|++++++||..+-.|+ .+.+++...--.......+|+. .| .+.|.. ... .+.. ..+-++..
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe-~l~~W~~p~~~~~~~~~~d~r~--GG-----~~~~~~~~~~--g~~~--~~~g~~~e 69 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPE-LVKRWWGPRGLTMTVCECDIRV--GG-----SYRYVHRAPD--GEEM--GFHGVYHE 69 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHH-HHhhccCCCCCcceEEEEeccC--CC-----EEEEEEECCC--CCEe--cceEEEEE
Confidence 5688999999999999998764 4555554332111122223332 23 123332 111 1111 11223445
Q ss_pred cCCCeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHHHHHHH
Q 002081 333 ADGKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQFA 412 (971)
Q Consensus 333 ~d~~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~~~~~~ 412 (971)
.+....++..-.. .+.| +. ...+.+.|+ .. +..|+|.+..+ +..-.-.+..+..|..+|-...++.|.
T Consensus 70 i~p~~~l~~t~~~-~~~~-~~--~s~v~~~l~-----~~-~~gT~l~l~~~--~~~~~~~~~~~~~~~~~Gw~~~l~~L~ 137 (142)
T cd07826 70 VTPPERIVQTEEF-EGLP-DG--VALETVTFT-----EL-GGRTRLTATSR--YPSKEARDGVLASGMEEGMEESYDRLD 137 (142)
T ss_pred EcCCCEEEEEeEe-cCCC-CC--ceEEEEEEE-----EC-CCCEEEEEEEE--eCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5544444443221 2233 22 246677888 23 36799998644 321112233455577778877777777
Q ss_pred HHHh
Q 002081 413 TFLS 416 (971)
Q Consensus 413 ~~l~ 416 (971)
+.|.
T Consensus 138 ~~l~ 141 (142)
T cd07826 138 ELLA 141 (142)
T ss_pred HHHh
Confidence 7664
No 314
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=28.75 E-value=25 Score=32.36 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=24.1
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHhhhhccCCCccc
Q 002081 447 KLAVHYFANFTVVSSFFMGIYVLIHIWLATSTTIQG 482 (971)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (971)
++.+..|--|..|+-.+.++|+|+.+.|--|+-+.|
T Consensus 9 KlfFEwFLF~~AIFiAItIlYILLalL~EvPkYIK~ 44 (117)
T PF07234_consen 9 KLFFEWFLFFGAIFIAITILYILLALLFEVPKYIKE 44 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455555666666777777888888888765554443
No 315
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=28.19 E-value=6.2e+02 Score=25.31 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=37.4
Q ss_pred CCCeEEEEEEEecCCCcCC-CeeEeEEE---EEEecCCCCCCCCCccEEEEEEEEEEeee
Q 002081 334 DGKVFAILASVSTPEVMYG-GSFKTELL---FCITPGPELSSGEQSSHLVISWRMNFLQS 389 (971)
Q Consensus 334 d~~~~~V~~~~~tpdVP~G-d~F~v~~r---y~i~~~~~~~~~~~~~~l~Vs~~i~w~ks 389 (971)
++..+++..++..+++|-. ++-+.++. |+|+ +.++++|++.....++-.++
T Consensus 113 ~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~-----~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 113 DGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIE-----PLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEE-----ECCCCCEEEEEEEeeCCCCC
Confidence 4556666667766667765 66666654 8899 45789999999999988775
No 316
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=28.11 E-value=2.9e+02 Score=29.40 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=59.6
Q ss_pred HHcCCcceeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEE---ecCCCeEEEEEEEecCCCcCC-C--eeEe
Q 002081 284 EEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYL---KADGKVFAILASVSTPEVMYG-G--SFKT 357 (971)
Q Consensus 284 ~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~~~~k~~~~te~q~~~---~~d~~~~~V~~~~~tpdVP~G-d--~F~v 357 (971)
..|+.-|-.+-.|+....=+...=.+.|....-.+.+.--.. .+..- ...|.+.++..++.-+++|.- + --..
T Consensus 73 ~dR~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p~RDfv-~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l 151 (205)
T cd08907 73 RERHLWDEDLLHSQVIEALENNTEVYHYVTDSMAPHPRRDFV-VLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLL 151 (205)
T ss_pred hchhhhhHHHHhhhhheeecCCCEEEEEEecCCCCCCCceEE-EEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEE
Confidence 335555555555542211123344566665433333222222 23322 223555555667766666653 3 3456
Q ss_pred EEEEEEecCCCCCCCCCccEEEEEEEEEEeeee--ee
Q 002081 358 ELLFCITPGPELSSGEQSSHLVISWRMNFLQST--MM 392 (971)
Q Consensus 358 ~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss--~~ 392 (971)
.++|.|+ +.++.+|+|.=.+++.|.|++ |.
T Consensus 152 ~sgYlIe-----p~g~g~s~ltyi~rvD~rG~~P~Wy 183 (205)
T cd08907 152 TSQYLIE-----PCGMGRSRLTHICRADLRGRSPDWY 183 (205)
T ss_pred eccEEEE-----ECCCCCeEEEEEEEeCCCCCCcHHH
Confidence 8899999 678899999999999999885 65
No 317
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=27.81 E-value=57 Score=35.11 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=29.9
Q ss_pred ccCeeEEeecceeEEeeccCCceeEEEEecccccccccc
Q 002081 672 LLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVL 710 (971)
Q Consensus 672 ~~~GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~k~ 710 (971)
...||+.||++.|.|-++ .-|..||+++|.+|...
T Consensus 25 W~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 25 WVKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred cEEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 445999999999999974 46779999999999874
No 318
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.54 E-value=5.4e+02 Score=24.14 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=18.8
Q ss_pred ccccCChhheeeecCCChhHHHHHH
Q 002081 812 SVLPVPMSFFMELFGGGELERAVME 836 (971)
Q Consensus 812 ~~~pisv~~~f~lF~d~~~~~~~~~ 836 (971)
.+++.|++.+|+++.|-.-..++.-
T Consensus 6 i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 6 ITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred EEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4578999999999988765545444
No 319
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=26.19 E-value=8e+02 Score=25.95 Aligned_cols=147 Identities=8% Similarity=0.002 Sum_probs=74.5
Q ss_pred eeeEEecChhhhhcccccCCCcccHHHHHHcCCcceeeccccccCCCCceEEEEEEEecccc---CCCceEEEEEEEEEe
Q 002081 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANK---LIKATKGFEEQTYLK 332 (971)
Q Consensus 256 ~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~~---~~k~~~~te~q~~~~ 332 (971)
+.-+++++++.||..||.+....-++......+.-+.... ++ ++ +.|...+.. +++.=-.... ....
T Consensus 53 ~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~-----~~---~~-i~Y~v~~p~~~~pv~~RDfV~~-r~~~ 122 (209)
T cd08906 53 LKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVD-----DN---TL-VSYDVAAGAAGGVVSPRDFVNV-RRIE 122 (209)
T ss_pred EEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeecc-----CC---cE-EEEEEccccccCCCCCCceEEE-EEEE
Confidence 4456688999998655543323334433333333332221 12 33 345433222 3432111211 2234
Q ss_pred cCCCeEEEE-EEEecCCCcC-CCeeEeE---EEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHHHHH
Q 002081 333 ADGKVFAIL-ASVSTPEVMY-GGSFKTE---LLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRET 407 (971)
Q Consensus 333 ~d~~~~~V~-~~~~tpdVP~-Gd~F~v~---~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl~e~ 407 (971)
.++++|++. .++.-+.+|= -++-+++ ..|.+.+ ...++++|++.-...++..| .+=+..|.+...+.+-++
T Consensus 123 ~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~---~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~ 198 (209)
T cd08906 123 RRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLK---SASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEF 198 (209)
T ss_pred ecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEE---CCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHH
Confidence 456666644 4554455553 4554555 4566662 11567788877777777655 334445666666677666
Q ss_pred HHHHHHHHh
Q 002081 408 YEQFATFLS 416 (971)
Q Consensus 408 ~~~~~~~l~ 416 (971)
+..|.+.|.
T Consensus 199 ~~~LR~~~~ 207 (209)
T cd08906 199 ASHLRQRIR 207 (209)
T ss_pred HHHHHHHHh
Confidence 666555543
No 320
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=25.67 E-value=2.8e+02 Score=31.74 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=71.2
Q ss_pred CCCCCCeeEEEEEeeEee--ecccCeeEEeecceeEEeeccCCceeEEEEeccccccccccCCccccCCCCeEEEEEeec
Q 002081 652 GLPPEEFLINDFTCHLKR--KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQG 729 (971)
Q Consensus 652 ~lp~~E~Li~~f~Cal~~--~~~~~GrlYls~~~lcF~S~~~g~~tk~~ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~ 729 (971)
.|-+.|.+++.+.-.+.- +.---|.+++|+-.+-.||++=- .-.++|||-.|..|......+ .+++||-....
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~ne-~fNVSiPylqi~~i~ir~SKf----G~aLVieT~~~ 224 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMNE-SFNVSIPYLQIKSIRIRDSKF----GPALVIETSES 224 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCCc-cccccchHhhheeeeeecccc----ceEEEEEEecc
Confidence 455678888888755533 33333999999999999997643 567899999999998887433 36777664433
Q ss_pred CCcCcCCCceeeccCCceEEEEeeccC----hhHHHHHHHHHHHhCCCCh
Q 002081 730 RGMDARHGAKTQDEEGRLKFHFHSFVS----YNVAHRTIMALWKARSLSP 775 (971)
Q Consensus 730 ~~l~~~~~~~~~~~~~~~k~~F~sf~~----rd~~~~~i~~~w~~~~ls~ 775 (971)
.| .|++.==++ .++.|+-|..||+.....|
T Consensus 225 sG----------------gYVLGFRvDP~ErL~~l~KEi~sLh~vy~~~P 258 (339)
T PF07289_consen 225 SG----------------GYVLGFRVDPEERLQELFKEIQSLHKVYSANP 258 (339)
T ss_pred CC----------------cEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33 354432233 3788888999998876554
No 321
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=25.45 E-value=6.5e+02 Score=25.62 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=52.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----------Ce-EEEeeeccC-----CCCCeeccEEEEEE--eCC--CCe
Q 002081 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG----------RQ-RFKTKVVRK-----SLSPSWEEEFSFKV--EDL--KDE 62 (971)
Q Consensus 3 L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~----------~~-~~rTkvi~~-----t~nP~WnE~F~F~v--~~~--~~~ 62 (971)
+.-.|..|.+.. ..+-||+..+. .. ...|.+... +..-.||.-|.+.. ..+ =..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 445678888654 24568888772 23 455655543 23457998877776 232 268
Q ss_pred EEEEEEeCCCCCCCceeEEEEEeC
Q 002081 63 LVISVLDEDKYFNDDFVGFLKIPV 86 (971)
Q Consensus 63 L~V~V~D~d~~~~d~~LG~v~I~l 86 (971)
|.++||..|..+++...|-..+.+
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999988887765554
No 322
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=24.73 E-value=3e+02 Score=26.11 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=48.1
Q ss_pred EEEEEEC-CeEEEeeeccCCCCCeeccEEEEEEeCC--------CCeEEEEEEeCCCCCCCceeEEEEEeCccccccCCC
Q 002081 25 YVRLQLG-RQRFKTKVVRKSLSPSWEEEFSFKVEDL--------KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (971)
Q Consensus 25 Yv~v~l~-~~~~rTkvi~~t~nP~WnE~F~F~v~~~--------~~~L~V~V~D~d~~~~d~~LG~v~I~l~~l~~~~~~ 95 (971)
||.+..- -+.+.|.++. ..+|.+|-+-.|.|.-. ...+.|+++..-. .....+|.+.+++..+.....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNG- 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCC-
Confidence 3444432 3557777776 78999998888888321 4789999988654 346789999999999985332
Q ss_pred CCCcEEEEcccCCCCCCCCcceEEEEEEEEE
Q 002081 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (971)
Q Consensus 96 ~~~~~W~~L~~~~~k~~~~~~G~I~L~i~~~ 126 (971)
.....-..|.+..+ ..-|.|...+++.
T Consensus 79 ~~i~~~~~l~g~~~----~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 ERIHGSATLVGVSG----EDFGTLEYWIRLR 105 (107)
T ss_dssp --EEEEEEE-BSSS-----TSEEEEEEEEEE
T ss_pred ceEEEEEEEeccCC----CeEEEEEEEEEec
Confidence 12334455554443 3678888777664
No 323
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=24.43 E-value=6.1e+02 Score=25.41 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=70.9
Q ss_pred eeeEEecChhhhhcccccCCCcccHHHH-HHcCCcceeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEecC
Q 002081 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWA-EEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKAD 334 (971)
Q Consensus 256 ~d~~~~~~~~~l~~llF~~~S~f~~~~~-~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~~~~k~~~~te~q~~~~~d 334 (971)
..-...++++++|..+.. ...+..+++ +.-+..++-.+.|... .-.|.++|.-+. + . .+-.|++...|
T Consensus 8 ~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~g----GSIk~~~f~~~~----~-~-~~~Kekve~~D 76 (151)
T PF00407_consen 8 VEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGPG----GSIKKWTFGPGG----P-F-KYVKEKVEAID 76 (151)
T ss_dssp EEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSSTT----T-EEEEEEETTS----S-E-EEEEEEEEEEE
T ss_pred EEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCCC----CeEEEEEecCCC----C-c-ceeEEEEEeec
Confidence 344558999999999765 335666665 6667788888998433 368999998732 1 1 22256666667
Q ss_pred CCeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEee
Q 002081 335 GKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQ 388 (971)
Q Consensus 335 ~~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~k 388 (971)
.+...+.-++.--|+ .+++.+-.....+.++ ++.. ..+.|.++|-+
T Consensus 77 ~~~~~~~y~viEGd~-l~~~~~~~~~~~~~~~-----~~g~--~v~k~t~~Ye~ 122 (151)
T PF00407_consen 77 EENKTITYTVIEGDV-LGDYKSFKSTIQKIPK-----GDGG--CVVKWTIEYEK 122 (151)
T ss_dssp TTTTEEEEEEEEETT-GTTTEEEEEEEEEEEE-----TTSC--EEEEEEEEEEE
T ss_pred CCCcEEEEEEEeccc-cccEEEEEEEEEecCC-----CCCc--eEEEEEEEEEe
Confidence 665555555554553 4566666666666643 3355 46677777765
No 324
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=24.15 E-value=6.5e+02 Score=24.22 Aligned_cols=89 Identities=12% Similarity=0.219 Sum_probs=55.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEE-EeeeccCCCCCeeccEEEEEEe---CCCCeEEEEEEeCCC-CCCC
Q 002081 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRF-KTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDK-YFND 76 (971)
Q Consensus 2 ~L~V~Vi~ArnL~~~d~~g~sDPYv~v~l~~~~~-rTkvi~~t~nP~WnE~F~F~v~---~~~~~L~V~V~D~d~-~~~d 76 (971)
.|.++-+.-.++|..+..+.+.||+.|.-+.... .+........-.=...+.+.+. .....+.|.+|+... ...+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 4666666777888777777899999999887765 3333222111111233444442 225788899998773 3556
Q ss_pred ceeEEEEEeCcccc
Q 002081 77 DFVGFLKIPVSRVF 90 (971)
Q Consensus 77 ~~LG~v~I~l~~l~ 90 (971)
+.+.++.+.-.-+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 77888888766653
No 325
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=24.10 E-value=8.7e+02 Score=25.66 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=35.4
Q ss_pred Cc-EEEEEEEeeCCCCCCCc-eE---EEEEEEEEeCCCCCCccEEEEEEEEEEeec
Q 002081 888 NG-WLVEEVMTLHGVPLGDY-FN---LHLRYQVEDSPSRPKGCLAQVYLGVAWLKS 938 (971)
Q Consensus 888 ~~-~vve~~~~~~dVPyGD~-F~---V~~R~~i~~~s~~~~~c~l~V~~~V~w~Ks 938 (971)
+. +++......+++|-..- -+ ....|.|+..+. ++|++...+.++..++
T Consensus 122 ~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~--~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 122 GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP--KGCTLTYVTQNDPKGS 175 (222)
T ss_pred CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC--CCEEEEEEEecCCCCC
Confidence 44 44566666778886554 33 345689998764 8899999999999886
No 326
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.08 E-value=5.9e+02 Score=23.67 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=19.2
Q ss_pred eEEEEEEEEEeCCCCCCccEEEEEEEEEE
Q 002081 907 FNLHLRYQVEDSPSRPKGCLAQVYLGVAW 935 (971)
Q Consensus 907 F~V~~R~~i~~~s~~~~~c~l~V~~~V~w 935 (971)
|....+|.++..+ .+|+|.....+..
T Consensus 83 ~~~~~~~~~~~~~---~~t~v~~~~~~~~ 108 (140)
T cd08865 83 FPYEDTYTFEPVG---GGTRVRYTAELEP 108 (140)
T ss_pred cceEEEEEEEEcC---CceEEEEEEEEcc
Confidence 4457889999865 3788887777665
No 327
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=23.49 E-value=78 Score=40.04 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCCceeeecCc---eEEEEEEEeecCCccCCCCCCCCCeEEEEeCC--------eeeeeecccccCCCC
Q 002081 515 SRFMQARKQKGSDHGVKAQGDG---WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG--------KSRTSSIKFQQCDPM 583 (971)
Q Consensus 515 ~~~~~~~~~~g~d~~~~~~~~~---~~l~v~l~~~~~l~~~d~~g~sdPyv~~~~~~--------~~~~s~v~~~~~np~ 583 (971)
..||+++-.+ -|-......|| ..|.|+||.|.=|-.++.+ -||.+.+=| .-||..+..+++||+
T Consensus 679 PdfmRrpDr~-fdPFse~~VdgvIA~t~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npv 753 (1189)
T KOG1265|consen 679 PDFMRRPDRQ-FDPFSESPVDGVIAATLSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPV 753 (1189)
T ss_pred hHHhhCCCcC-cCCcccCcccceEEeeEEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcc
Confidence 4566655332 23333333455 7899999999999998844 699998422 223444556999999
Q ss_pred Cc-ccceE
Q 002081 584 WN-DLADV 590 (971)
Q Consensus 584 wn-~~~~~ 590 (971)
|+ |++.|
T Consensus 754 y~eepfvF 761 (1189)
T KOG1265|consen 754 YEEEPFVF 761 (1189)
T ss_pred cccCCccc
Confidence 99 44443
No 328
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=22.28 E-value=9.5e+02 Score=25.45 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=79.5
Q ss_pred CCCCce-eeeEEecChhhhhcccccCCCcccHHHHHHcCCcceeeccccccCCCCceEEEEEEEeccccC---CC--ceE
Q 002081 250 LPGGVL-VDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKL---IK--ATK 323 (971)
Q Consensus 250 ~~g~~~-~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~~~---~k--~~~ 323 (971)
..|-+. +--+.+++++++|.+||.+. ...+. ..-+.+...-. .-..+ + .|+|.+..+.+ ++ +.
T Consensus 43 ~~gkl~k~egvi~~~~e~v~~~l~~~e--~r~~W--d~~~~~~~iie--~Id~~---T-~I~~~~~~~~~~~~vspRDf- 111 (204)
T cd08904 43 YHGNLYRVEGIIPESPAKLIQFMYQPE--HRIKW--DKSLQVYKMLQ--RIDSD---T-FICHTITQSFAMGSISPRDF- 111 (204)
T ss_pred CCceEEEEEEEecCCHHHHHHHHhccc--hhhhh--cccccceeeEE--EeCCC---c-EEEEEecccccCCcccCceE-
Confidence 344444 45577999999999988532 11111 11222222222 11122 1 46676554322 22 22
Q ss_pred EEEEEEEEecCCCeEEEEE-EEecCCCc-CCCeeE---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhc
Q 002081 324 GFEEQTYLKADGKVFAILA-SVSTPEVM-YGGSFK---TELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIEN 398 (971)
Q Consensus 324 ~te~q~~~~~d~~~~~V~~-~~~tpdVP-~Gd~F~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek 398 (971)
+.. +.-.+.++..|++.. ++.-|..| --++.+ .-+-|.|.| +...++.|+|.....+.++| -+=|..|++
T Consensus 112 V~v-r~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~p---l~~~p~~t~l~~~~~~DlkG-~lP~~vv~~ 186 (204)
T cd08904 112 VDL-VHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSP---LPENPAYSKLVMFVQPELRG-NLSRSVIEK 186 (204)
T ss_pred EEE-EEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEE---CCCCCCceEEEEEEEeCCCC-CCCHHHHHH
Confidence 111 222233566677644 44445554 344444 345688884 23455689999999988764 346777887
Q ss_pred cHHHHHHHHHHHHHHH
Q 002081 399 GARSALRETYEQFATF 414 (971)
Q Consensus 399 ~a~~gl~e~~~~~~~~ 414 (971)
...+.|-+++..+.+.
T Consensus 187 ~~~~~~~~f~~~~~~~ 202 (204)
T cd08904 187 TMPTNLVNLILDAKDG 202 (204)
T ss_pred HhHHHHHHHHHHHHHh
Confidence 7777775555554443
No 329
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=22.23 E-value=33 Score=22.84 Aligned_cols=11 Identities=45% Similarity=1.093 Sum_probs=9.8
Q ss_pred cccchhhhccc
Q 002081 641 PQTNSAFQKLF 651 (971)
Q Consensus 641 ~~~~~~f~~lF 651 (971)
++.|.+||++|
T Consensus 9 p~SNddFrkmf 19 (21)
T PF05391_consen 9 PKSNDDFRKMF 19 (21)
T ss_pred ccchHHHHHHH
Confidence 67899999998
No 330
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=22.20 E-value=80 Score=33.81 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=29.9
Q ss_pred eeEEEEeccccccccccCCccccCCCCeEEEEEeecCCc
Q 002081 694 KTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGM 732 (971)
Q Consensus 694 ~tk~~ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~~~l 732 (971)
.-.|.+|+.||..|++.++.+ |.+.|+++++.|..+
T Consensus 111 ~~aFsv~lsdl~Si~~~~p~~---G~~~lv~~~kdG~~~ 146 (213)
T PF12068_consen 111 SYAFSVPLSDLKSIRVSKPSL---GWWYLVFILKDGTSL 146 (213)
T ss_pred ceEEEEEhhheeeEEecCCCC---CceEEEEEecCCCcc
Confidence 347889999999999998765 889999998877553
No 331
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=22.14 E-value=9.8e+02 Score=25.54 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=41.0
Q ss_pred cCCCCcEEEEEEEeeCCCCCCC---ceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecc
Q 002081 884 LPNGNGWLVEEVMTLHGVPLGD---YFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKST 939 (971)
Q Consensus 884 ~~~~~~~vve~~~~~~dVPyGD---~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst 939 (971)
+..+.++++..++.-+.+|.-. .-...++|.|++.+. .+|+|.=...|+|.+++
T Consensus 123 l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~--g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 123 LPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGM--GRSRLTHICRADLRGRS 179 (205)
T ss_pred CCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCC--CCeEEEEEEEeCCCCCC
Confidence 4445566667666666666653 456789999999864 89999999999999974
No 332
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=21.04 E-value=1.3e+02 Score=28.30 Aligned_cols=40 Identities=33% Similarity=0.491 Sum_probs=34.8
Q ss_pred cccccccCCCCCcchhhheeeeEEEEEehhhhHHHHHHHHHH
Q 002081 480 IQGLEFVGLDLPDSIGEFIVCGVLVLQGERFLQLISRFMQAR 521 (971)
Q Consensus 480 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (971)
...||+.| +|.++.-++.+.|=+|=.|.+..++.||+..|
T Consensus 61 ~~~L~~~g--l~~~~a~~~g~~IGflGvd~ir~~~~r~~~~k 100 (100)
T PF05106_consen 61 RSLLEYFG--LPQSLAVFIGGFIGFLGVDKIRELIRRFINKK 100 (100)
T ss_pred HHHHHHhC--CChhhhhhheeeeeccCHHHHHHHHHHHhhcC
Confidence 34678886 59999999999999999999999999999765
No 333
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=21.03 E-value=6.5e+02 Score=23.93 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=22.5
Q ss_pred EEEEEEEEEeCCCCCCccEEEEEEEEEEee
Q 002081 908 NLHLRYQVEDSPSRPKGCLAQVYLGVAWLK 937 (971)
Q Consensus 908 ~V~~R~~i~~~s~~~~~c~l~V~~~V~w~K 937 (971)
..+..|.|+..++ ++|++...+.++...
T Consensus 82 ~~~g~w~~~p~~~--~~T~v~~~~~~~~~~ 109 (138)
T cd07813 82 HLEGEWRFKPLGE--NACKVEFDLEFEFKS 109 (138)
T ss_pred hceeEEEEEECCC--CCEEEEEEEEEEECC
Confidence 3688999999875 789888888887754
No 334
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=20.01 E-value=1e+03 Score=25.00 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=76.9
Q ss_pred eeeEEe-cChhhhhcccccCCCcccHHHHHHcCCcceeeccccccCCCCceEEEEEEEeccccCC--CceEEEEEEEEEe
Q 002081 256 VDQMYV-IAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLI--KATKGFEEQTYLK 332 (971)
Q Consensus 256 ~d~~~~-~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~~~~~~~~--k~~~~te~q~~~~ 332 (971)
.-.+|+ +++..++.+|... ++..+....-. ++- +...++ .+.+.|...+--++ -+. ++ .+....
T Consensus 53 ~~~~~~~~s~~~~~~~l~D~--~~r~~Wd~~~~--~~~----~~~~~~---~~i~y~~~k~PwPvs~RD~-V~-~r~~~~ 119 (207)
T cd08910 53 VFGVLEDCSPSLLADVYMDL--EYRKQWDQYVK--ELY----EKECDG---ETVIYWEVKYPFPLSNRDY-VY-IRQRRD 119 (207)
T ss_pred EEEEEcCCCHHHHHHHHhCH--HHHHHHHHHHH--hhe----eecCCC---CEEEEEEEEcCCCCCCceE-EE-EEEecc
Confidence 345776 7899999888753 45544333211 111 112223 34444443333323 233 11 122222
Q ss_pred c--CCC-eEEEE-EEEecCCCcCCCee-E---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeeehhhhccHHHHH
Q 002081 333 A--DGK-VFAIL-ASVSTPEVMYGGSF-K---TELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSAL 404 (971)
Q Consensus 333 ~--d~~-~~~V~-~~~~tpdVP~Gd~F-~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~gl 404 (971)
. ++. .|+|. ..+.-|++|-.+-| + ....|.|+ +.++++|++......+..++ +=+.++..-+..++
T Consensus 120 ~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~-----p~~~~~t~i~~~~~~DPgG~-IP~wlvN~~~~~~~ 193 (207)
T cd08910 120 LDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIE-----SDGKKGSKVFMYYFDNPGGM-IPSWLINWAAKNGV 193 (207)
T ss_pred ccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEE-----eCCCCceEEEEEEEeCCCCc-chHHHHHHHHHHhh
Confidence 2 233 34443 45556788876443 3 45667788 45678899888888876443 23334445566777
Q ss_pred HHHHHHHHHHHhhc
Q 002081 405 RETYEQFATFLSQT 418 (971)
Q Consensus 405 ~e~~~~~~~~l~~~ 418 (971)
-.++..|.++.++|
T Consensus 194 ~~~l~~l~ka~~~y 207 (207)
T cd08910 194 PNFLKDMQKACQNY 207 (207)
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777666554
Done!