Query 002082
Match_columns 971
No_of_seqs 191 out of 401
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 16:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 1E-147 2E-152 1219.1 63.8 812 26-957 2-846 (1082)
2 KOG4541 Nuclear transport rece 100.0 8.3E-41 1.8E-45 365.4 28.0 480 448-960 3-545 (748)
3 COG5101 CRM1 Importin beta-rel 100.0 8E-27 1.7E-31 259.0 57.8 243 33-347 14-264 (1053)
4 KOG2020 Nuclear transport rece 99.9 3.1E-20 6.6E-25 227.1 29.8 345 33-470 11-368 (1041)
5 KOG4541 Nuclear transport rece 99.9 7.1E-20 1.5E-24 201.9 29.3 515 290-865 1-531 (748)
6 KOG2022 Nuclear transport rece 99.7 9.4E-11 2E-15 137.6 62.3 683 23-883 1-733 (982)
7 KOG2021 Nuclear mRNA export fa 99.6 1.4E-10 3.1E-15 133.4 52.5 261 32-365 2-275 (980)
8 KOG2171 Karyopherin (importin) 99.3 7.4E-07 1.6E-11 108.9 53.3 147 33-187 4-152 (1075)
9 KOG2023 Nuclear transport rece 99.0 3.5E-06 7.6E-11 97.0 35.8 579 33-890 13-655 (885)
10 PF08389 Xpo1: Exportin 1-like 98.8 7.4E-08 1.6E-12 95.3 15.4 147 123-339 1-148 (148)
11 KOG1991 Nuclear transport rece 98.6 0.0044 9.4E-08 75.6 62.7 148 23-185 1-159 (1010)
12 PF03810 IBN_N: Importin-beta 98.6 2.2E-07 4.8E-12 81.2 8.5 67 51-117 1-77 (77)
13 KOG2081 Nuclear transport regu 98.3 0.00083 1.8E-08 77.4 29.9 131 49-188 2-132 (559)
14 KOG1241 Karyopherin (importin) 98.2 0.038 8.2E-07 65.9 46.4 140 39-185 7-162 (859)
15 KOG1992 Nuclear export recepto 97.7 0.031 6.6E-07 67.1 29.9 162 48-223 22-193 (960)
16 KOG1993 Nuclear transport rece 97.4 0.0063 1.4E-07 72.4 17.5 156 48-222 17-181 (978)
17 COG5656 SXM1 Importin, protein 96.4 3.4 7.4E-05 49.9 55.4 142 36-182 7-155 (970)
18 COG5657 CSE1 CAS/CSE protein i 96.3 0.29 6.3E-06 59.9 20.3 132 45-185 18-155 (947)
19 COG5215 KAP95 Karyopherin (imp 94.2 15 0.00033 43.3 48.5 106 48-161 22-142 (858)
20 KOG2274 Predicted importin 9 [ 92.4 37 0.0008 42.4 54.6 137 39-184 10-159 (1005)
21 PF06738 DUF1212: Protein of u 46.3 2.4E+02 0.0052 28.9 11.7 103 20-134 59-162 (193)
22 PF10521 DUF2454: Protein of u 41.9 2.6E+02 0.0056 30.8 11.7 171 137-377 107-278 (282)
23 KOG1241 Karyopherin (importin) 39.2 8.8E+02 0.019 30.5 19.7 153 715-884 652-812 (859)
24 PF03224 V-ATPase_H_N: V-ATPas 38.1 3.9E+02 0.0084 29.8 12.6 85 53-139 93-179 (312)
25 PF01602 Adaptin_N: Adaptin N 34.3 2E+02 0.0044 34.3 10.3 91 74-180 89-179 (526)
26 PF03991 Prion_octapep: Copper 34.2 21 0.00045 17.3 0.6 6 11-16 3-8 (8)
27 cd00020 ARM Armadillo/beta-cat 33.9 1.9E+02 0.0042 26.1 8.0 107 64-181 8-119 (120)
28 PF00790 VHS: VHS domain; Int 33.0 1.6E+02 0.0035 28.7 7.4 98 34-135 9-114 (140)
29 COG1698 Uncharacterized protei 32.9 1.6E+02 0.0034 26.4 6.3 68 21-88 8-81 (93)
30 PF04821 TIMELESS: Timeless pr 29.2 1.6E+02 0.0036 32.1 7.4 95 855-949 44-150 (266)
31 PF13646 HEAT_2: HEAT repeats; 28.7 2.3E+02 0.005 24.3 7.1 84 35-134 1-87 (88)
32 cd03561 VHS VHS domain family; 27.6 5.1E+02 0.011 24.9 9.8 60 75-136 48-109 (133)
33 PF12612 TFCD_C: Tubulin foldi 27.3 1.2E+02 0.0025 31.5 5.6 53 854-907 129-183 (193)
34 cd00197 VHS_ENTH_ANTH VHS, ENT 25.8 5.4E+02 0.012 23.8 11.7 58 75-136 48-112 (115)
35 PTZ00429 beta-adaptin; Provisi 25.3 1.3E+03 0.028 29.4 15.0 92 75-181 116-207 (746)
36 KOG1086 Cytosolic sorting prot 24.8 1.2E+03 0.025 27.3 19.7 177 19-217 17-224 (594)
37 cd03567 VHS_GGA VHS domain fam 21.5 7.7E+02 0.017 24.1 11.0 58 75-134 49-111 (139)
38 KOG0860 Synaptobrevin/VAMP-lik 20.5 2.6E+02 0.0056 26.4 5.7 38 4-44 10-47 (116)
39 cd03565 VHS_Tom1 VHS domain fa 20.3 7.4E+02 0.016 24.2 9.4 60 73-134 48-110 (141)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-147 Score=1219.12 Aligned_cols=812 Identities=17% Similarity=0.243 Sum_probs=725.4
Q ss_pred HhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHH
Q 002082 26 AKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTAD 102 (971)
Q Consensus 26 ~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~ 102 (971)
++| +|||.+|+.+|++.| |.+||+.|.+|..+|+++++|+.||++++.||.++.|++.|.+.+.++- .+|.+
T Consensus 2 ~sL----aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~ 76 (1082)
T KOG1410|consen 2 QSL----AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLE 76 (1082)
T ss_pred ccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHH
Confidence 467 999999999999875 8999999999999999999999999999999999999999999999974 79999
Q ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCC---chhhHHHHHHHHhccCCChhHHHHHHHHHHH
Q 002082 103 EKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS---DKEAFFSQVHQAVLGIHGVDTQFIGINFLES 179 (971)
Q Consensus 103 ~k~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~---~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~ 179 (971)
||.+||+|++||+.++++.+++||...++|++|+|+|+||+|.++. +|+ .+.++.++++. ++.+|++||+.||++
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd-~v~~~~kfl~~-~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRD-PVDDVTKFLQM-DNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhh-hHHHHHHHhcc-CchHHHHHHHHHHHH
Confidence 9999999999999999889999999999999999999999997654 365 88999999985 669999999999999
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhccccccc
Q 002082 180 LVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQF 259 (971)
Q Consensus 180 lv~Efs~~~ss~~gl~~~~Hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~ 259 (971)
||+||+..+. +.|.++|||.+.+|||+.|.+||.+++.+|+...+..++. ..+.+++.++|++..+||+|||+|
T Consensus 155 LvqemN~~~~---~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd---~~q~~L~~~vL~L~l~Cl~FDfiG 228 (1082)
T KOG1410|consen 155 LVQEMNQADG---MDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLND---RAQLGLLMQVLKLNLNCLNFDFIG 228 (1082)
T ss_pred HHHHhhCCCC---CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCccc---HhHhhHHHHHHHHHhhhccccccc
Confidence 9999999877 8899999999999999999999999999999877443332 235789999999999999999999
Q ss_pred CCCCCcccccccccccccccCCCCCCcccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHH
Q 002082 260 DTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI 339 (971)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Wr~~l~~~~~l~llf~ly~~~r~~~~~~~~~~~~~l~~~~l~cL 339 (971)
++.||+ +||..|+|+|++||..|.|+.++++||++|..+ ||+++..+++||
T Consensus 229 ss~DEs------------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~sl-----------p~~~S~~alscl 279 (1082)
T KOG1410|consen 229 SSTDES------------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSL-----------PPELSELALSCL 279 (1082)
T ss_pred cccccc------------------cccccceecCcHHHHHhcCchHHHHHHHHhccC-----------CchhhHHHHHHH
Confidence 999998 999999999999999999999999999999877 788999999999
Q ss_pred HHHhhcccCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCCh-hhHHHHHHHHHHHHhhcChhhHHHHhhcc
Q 002082 340 VQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEMLDGCRALLSIATVTTPFVFDRLLKSI 418 (971)
Q Consensus 340 ~qLasl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~~e~cr~L~rL~~~~~~~~~~~l~~~~ 418 (971)
+|+||+||++|++. +|.+|+++++.|+..|+++|. |+++ .|||||||+|+||++||++.++..+.+
T Consensus 280 vqlASvRRsLFN~a---eRa~yl~~Lv~Gvk~il~np~--------~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~-- 346 (1082)
T KOG1410|consen 280 VQLASVRRSLFNGA---ERAKYLQHLVEGVKRILENPQ--------GLSDPANYHEFCRLLARLKTNYQLGELVKVEC-- 346 (1082)
T ss_pred HHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhCCc--------CCCCcchHHHHHHHHHHHHhhhhhHhhhccCC--
Confidence 99999999999644 699999999999999999876 8877 999999999999999999888877664
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhcccCcchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHHhcccc
Q 002082 419 RPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKV 498 (971)
Q Consensus 419 ~~~~~l~~L~~lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~~l~~~~~~I~~~Yi~srL~~ 498 (971)
|-++ +.+++.||+.+.+.|+|+++|++|||..|.+|+.++||+|++ .|+-+.+|+|+|+++||.||++.
T Consensus 347 ----Y~e~-----irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~--~phlLd~y~PeIt~afi~SRl~s 415 (1082)
T KOG1410|consen 347 ----YPEV-----IRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNT--EPHLLDTYCPEITKAFITSRLQS 415 (1082)
T ss_pred ----cHHH-----HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCC--ChHHHhhhcHHHHHHHHHHHhhh
Confidence 3343 478889999999999999999999999999999999999875 68888899999999999999999
Q ss_pred ccccccCCCCcccchhccHhHHHHHHHHHHHHHHhcHhhhHHHHHHHHHHHHHHHhccc--CCCCC--chhHH-HHHHHH
Q 002082 499 ASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGR--GMIDP--TETLE-ELYSLL 573 (971)
Q Consensus 499 ~~~~~~~d~e~de~~~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~--~~~~~--~~~~E-~L~WLv 573 (971)
++..++|+ .|+|+||.+...+||+.++.+|||.|++||.+|+++|++..+.|++.. ++.+. ..+.| +|.|||
T Consensus 416 V~~ivrd~---~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv 492 (1082)
T KOG1410|consen 416 VEIIVRDG---LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLV 492 (1082)
T ss_pred hheecccC---CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhH
Confidence 99988765 578999999999999999999999999999999999999999998753 22222 47899 999999
Q ss_pred HHHHhHhccCC-----CCCcccCchhhhhhhhhhhhcccchHHHHHHHHHHHHHhhcCccccccCCCHHHHHHHHHHHHH
Q 002082 574 LITGHVLADEG-----EGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLAR 648 (971)
Q Consensus 574 ~i~g~~lad~~-----~ge~~~ip~~i~~~~~~~~~~~~d~vv~Lv~~l~~l~~~~l~~~~~~~~~Sp~L~~a~lwfl~~ 648 (971)
+|+|.++++.. |.++.|+++- +.-|.+++++++.++ +.....+++.+++|||++
T Consensus 493 ~lvgtvV~gk~t~~Std~~d~mDgEL----------------~arvlql~nlmdsr~-----~~~~n~rle~ail~f~eq 551 (1082)
T KOG1410|consen 493 YLVGTVVGGKTTATSTDEHDAMDGEL----------------SARVLQLVNLMDSRL-----PLKGNERLELAILHFLEQ 551 (1082)
T ss_pred HHhHHHhcceecccccchhhhhhhHH----------------HHHHHHHHHhhhccc-----chhhhHHHHHHHHHHHHH
Confidence 99999999874 3333344431 111345555555443 445778999999999999
Q ss_pred HHHhccCCcccccccCCCCCCCCCccccccchhhHHHhhhcCCCCc--hhHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 002082 649 WSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKDLQELTCNQL 726 (971)
Q Consensus 649 ~~~~Yl~~~~d~~~~~~~~~~~~~~~~~s~~~~~~l~~~fg~~~~~--~~vl~~iv~ki~~nL~~w~~e~~v~~~t~~~L 726 (971)
||++|+| |+. ++++|.|.+.-+..|.. ..+++.||.||.+|||+|+..++|+..|+ .|
T Consensus 552 FRk~Yvg---DQ~----------------~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-sl 611 (1082)
T KOG1410|consen 552 FRKAYVG---DQI----------------QRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTL-SL 611 (1082)
T ss_pred HHHHHHH---HHH----------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHH-HH
Confidence 9999999 655 35678998888887754 78999999999999999999999999999 99
Q ss_pred HHHHhccccchhhHHcchHHHHHHHHhhccc-cccccC-----chhhHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Q 002082 727 LHALVRRKNVCVHLVALGSWRELASAFANDK-TLILLN-----STNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATA 800 (971)
Q Consensus 727 L~~L~~~~~~~~~l~~l~~~~~L~~~~~~~~-~~~~l~-----~~~~r~l~~aL~~l~~~~~~~~~~~~~f~~~l~pl~~ 800 (971)
|.+|+.+++.+++|+++|.++++.+||+++| +|++.. .++|++||.||+|+++ .|..+++..|++||.|++.
T Consensus 612 f~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~--~d~sede~~fe~fm~PLt~ 689 (1082)
T KOG1410|consen 612 FNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLM--VDLSEDEDMFERFMLPLTD 689 (1082)
T ss_pred HHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHh--hcccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 787765 3578889999999995 5555678899999999999
Q ss_pred HHHHHhCCCCcccccChhhHHHHHHHHHHHhhchhhccCcC-cHHHHHHHHHhh-hHHHHHHHHhhcCChHHHHHHHHHH
Q 002082 801 YLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR-TQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFV 878 (971)
Q Consensus 801 ~~~~l~~~~~~~~~~~~~~v~~~v~~ll~~LrGi~~a~~~~-s~~~lf~~l~~~-l~~l~~l~~~y~~~p~Vv~~iLkf~ 878 (971)
.|+.+++.-. ++...++++|..++|++|||||||.|.+++ +|+++|||+||. ||.+.+.++.|.++|+|++|||||+
T Consensus 690 ~fe~v~~~~~-nn~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklm 768 (1082)
T KOG1410|consen 690 AFEGVLQVFQ-NNCFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLM 768 (1082)
T ss_pred HHHHHHHHhc-cccccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 9998875311 012456889999999999999999999999 999999999999 9999999999999999999999999
Q ss_pred HHHHhccccccC----cchhHHHHHHHHHHHHHHHhcccC--ccccccccccccchhhhhhhhHHHHHHHHHHhhcCCCc
Q 002082 879 VDWVDGQISYLE----VQETNIVIDFCTRLLQLYSSHNIG--KMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLV 952 (971)
Q Consensus 879 ~elv~n~~~~l~----s~~g~~Lf~~~~~li~~Y~~~~~~--~~~~~~~~~~~~~~~~e~yk~l~~~l~iL~~~lsg~~v 952 (971)
+|+|+||.|||+ ||||++||||++++|++||++++. .++ ++..|++|||||++|+.||+++++|+||
T Consensus 769 aE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vs-------kdqiY~~kyKgI~v~~siLk~AL~GnYv 841 (1082)
T KOG1410|consen 769 AELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVS-------KDQIYAEKYKGISVCFSILKNALSGNYV 841 (1082)
T ss_pred HHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcc-------hhhhHHHHhcCceehHHHHHHHhhcCcc
Confidence 999999999998 999999999999999999999883 333 6679999999999999999999999999
Q ss_pred cCCCC
Q 002082 953 GLSST 957 (971)
Q Consensus 953 ~fg~d 957 (971)
|||+.
T Consensus 842 ~FGVF 846 (1082)
T KOG1410|consen 842 NFGVF 846 (1082)
T ss_pred cccee
Confidence 99964
No 2
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-41 Score=365.40 Aligned_cols=480 Identities=17% Similarity=0.103 Sum_probs=396.0
Q ss_pred chHHHHHHHHHH----HHH-hhhcccccCCCCCCChhhhhhHHHHHHHHHHhcccccccc---------ccCCCCccc--
Q 002082 448 WSWEARDILLDT----WTT-LLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASAS---------AMDDNGEFN-- 511 (971)
Q Consensus 448 ~~~es~~~LL~~----W~~-lv~~~~~~~~~~~~p~~l~~~~~~I~~~Yi~srL~~~~~~---------~~~d~e~de-- 511 (971)
.++++++.||+- |.. ++.+..- +-.....+.+++.+|++.|+++|+.++.+. .++++|.++
T Consensus 3 ~y~s~~d~Ll~s~~~~Wltnl~~~~~~---~f~~~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~ 79 (748)
T KOG4541|consen 3 PYASWCDVLLSSSHVGWLTNLYSSVRQ---KFDLEGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLT 79 (748)
T ss_pred chHHHHHHHHhcCCcchHHHHHhhHHH---HHhhhhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhc
Confidence 467888999988 988 7775221 100112456889999999999999988751 234443332
Q ss_pred chhccHhHHHHHHHHHHHHHHhcHhhhHHHHHHHHHHHHHHHhcc----------cCCCC-----CchhHHHHHHHHHHH
Q 002082 512 YLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG----------RGMID-----PTETLEELYSLLLIT 576 (971)
Q Consensus 512 ~~~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~----------~~~~~-----~~~~~E~L~WLv~i~ 576 (971)
+.+||.+-+.|++.....+||...+.+.+.. .+++....+++.. -|+.. ...++||.|||+++.
T Consensus 80 ~~edd~D~s~D~~~~~~~~gr~gae~c~~~~-~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl 158 (748)
T KOG4541|consen 80 GVEDDIDPSPDVISKEIEEGRSGAEMCDGCR-ALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVL 158 (748)
T ss_pred CCCccCCcchhHHHHHHhcCchHHHHHHHHH-HHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2255666689999999999999999999988 7888877777631 12221 147999999999999
Q ss_pred HhHhccCCCCCcccCchhhhhhhhhh--------------h--h----------cccchHHHHHHHHHHHHHhhcCc--c
Q 002082 577 GHVLADEGEGEIPVVPNAIQTHFVDT--------------I--E----------AAKHPVVLLCGSIIKFAEWSLDP--E 628 (971)
Q Consensus 577 g~~lad~~~ge~~~ip~~i~~~~~~~--------------~--~----------~~~d~vv~Lv~~l~~l~~~~l~~--~ 628 (971)
|+.++|+..|+.+.+|..+..|.... . + -..|++|++.+.+++....+... +
T Consensus 159 ~~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a 238 (748)
T KOG4541|consen 159 MANSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSA 238 (748)
T ss_pred HHhccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHH
Confidence 99999999999999999998885310 0 0 13478888889999888765321 2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHhccCCcccccccCCCCCCCCCccccccchhhHHHhhhcCCCCc-hhHHHHHHHHHHH
Q 002082 629 ARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVLDIIVRISMT 707 (971)
Q Consensus 629 ~~~~~~Sp~L~~a~lwfl~~~~~~Yl~~~~d~~~~~~~~~~~~~~~~~s~~~~~~l~~~fg~~~~~-~~vl~~iv~ki~~ 707 (971)
...+.+||++...+.||+.+|.++|..-.++ +|..+|+ ....+++....+ .+++.+++.|++.
T Consensus 239 ~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~------------~y~~~s~----~~~tv~p~~te~s~~~~~~ii~kVla 302 (748)
T KOG4541|consen 239 MDERLGSPALIARLARFLDATIPFLAKLFSD------------HYARLSQ----GRGTVDPTETEESVYSLLLIIGKVLA 302 (748)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHHHHhHH------------HHHHhcC----CCCCCCcccchhhHHHHHHHHHHHHH
Confidence 2246799999999999999999999986544 3444432 334455555544 6899999999999
Q ss_pred hccCCCCchhHHHHHHHHHHHHHhccccchhhHHcchHHHHHHHHhhccc-cccccCchhhHHHHHHHHHHHhcCCCchh
Q 002082 708 TLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDK-TLILLNSTNQRSLAQTLVLSAYGMRNSES 786 (971)
Q Consensus 708 nL~~w~~e~~v~~~t~~~LL~~L~~~~~~~~~l~~l~~~~~L~~~~~~~~-~~~~l~~~~~r~l~~aL~~l~~~~~~~~~ 786 (971)
+|..|.+|++++.+++ ++|-.||.+++.....+.++.|+.++....+.. ++.-+++.++++++++|++.+++..|.+.
T Consensus 303 ~lvn~~sE~~L~~Da~-q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~ 381 (748)
T KOG4541|consen 303 DLVNGESETALVPDAL-QSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEE 381 (748)
T ss_pred HHhcccchhhhhHHHH-HHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999 999999999888778888899999999988765 45556677999999999999998889888
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCcccccChhhHHHHHHHHHHHhhchhhccCcCcHHHHHHHHHhhhHHHHHHHHhhcC
Q 002082 787 SNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKH 866 (971)
Q Consensus 787 ~~~~f~~~l~pl~~~~~~l~~~~~~~~~~~~~~v~~~v~~ll~~LrGi~~a~~~~s~~~lf~~l~~~l~~l~~l~~~y~~ 866 (971)
..++|...++||..||-..++.+ ++.+++.+|+..++++.|++.|.+..+...+|++++..+..|+.+|..|.+
T Consensus 382 ~~n~~~~~LqpL~~Rf~~~~nq~------~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~Lf~fL~~~~~~c~glm~s~~~ 455 (748)
T KOG4541|consen 382 ECNLGSNKLQPLPSRFFTYFNQH------NQGKFVLDIIVRLSLTSGTAYAGQKDLQRSLFQFLVLSAYGCRGLMASNQY 455 (748)
T ss_pred HHHHHHhhccccHHHHHHHhccc------chhhHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 89999999999999999998876 568899999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhccccccC-cchhHHHHHHHHHHHHHHHhcccCccccccccccccchhhhhhhhHHHHHHHHHH
Q 002082 867 ESAVVYLLLKFVVDWVDGQISYLE-VQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSN 945 (971)
Q Consensus 867 ~p~Vv~~iLkf~~elv~n~~~~l~-s~~g~~Lf~~~~~li~~Y~~~~~~~~~~~~~~~~~~~~~~e~yk~l~~~l~iL~~ 945 (971)
.|++|..|+..+.++.++.++|+. ....+.||..|+++++.|+..+.+|.+-. ..+|+|+|.|+.++|++|+|
T Consensus 456 ~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~~~~~~r~rt~------~a~~Ee~~sdl~lvl~lL~n 529 (748)
T KOG4541|consen 456 VKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYGAASATRPRTQ------RAIYEEGLSDLNLVLRLLEN 529 (748)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhhhhcccCcchH------HHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999999999998 78889999999999999999999987753 37899999999999999999
Q ss_pred hhcCCCccCCC-Cccc
Q 002082 946 LCSKDLVGLSS-TCIH 960 (971)
Q Consensus 946 ~lsg~~v~fg~-d~~~ 960 (971)
.++|||.+||- +..+
T Consensus 530 ~lskdF~~~s~e~~~~ 545 (748)
T KOG4541|consen 530 YLSKDFSSDSIETQST 545 (748)
T ss_pred Hhhhhhhccccccccc
Confidence 99999999994 4444
No 3
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.98 E-value=8e-27 Score=258.97 Aligned_cols=243 Identities=13% Similarity=0.239 Sum_probs=213.6
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 002082 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (971)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ 110 (971)
+-|+++++.+|.|.+ ++|||++|+.|++.|++|++..+||++|+.|..+|.|+++|.++|+++|+.+|.++|.+||+|
T Consensus 14 allDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRny 93 (1053)
T COG5101 14 ALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNY 93 (1053)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHH
Confidence 678999999999976 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCC-----hhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCC-hhHHHHHHHHHHHHHhhh
Q 002082 111 CLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHG-VDTQFIGINFLESLVSEF 184 (971)
Q Consensus 111 ll~yl~~~~~~l-----~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~-~~~~~igl~iL~~lv~Ef 184 (971)
+.+.+++++.+. +++|.+++..+++.|+|++||.+ |++|++|+.+..+.+.+ .++.++.+++|++.|++|
T Consensus 94 vv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~n----WP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdf 169 (1053)
T COG5101 94 VVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRN----WPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDF 169 (1053)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccc----cchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhc
Confidence 999999998554 68999999999999999999995 99999999988773222 366689999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcccccccCCCCC
Q 002082 185 SPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGR 264 (971)
Q Consensus 185 s~~~ss~~gl~~~~Hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~ 264 (971)
|.. .++-.+.|..|.++ ...+.+||.+|.++|+.. .+.++++++|+-+...|.|.+.+
T Consensus 170 Sae-----qmTq~k~~~LkNqm-~~EF~qIF~lc~qiLE~~-----------~~~SLi~ATLesllrfl~wiPl~----- 227 (1053)
T COG5101 170 SAE-----QMTQVKKRLLKNQM-KIEFPQIFGLCKQILEYS-----------RDESLIEATLESLLRFLEWIPLD----- 227 (1053)
T ss_pred cHH-----HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHHHhhCchh-----
Confidence 875 22233455668888 456999999999999864 35789999999999999999987
Q ss_pred cccccccccccccccCCCCCCcccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHhh
Q 002082 265 KISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCS 344 (971)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Wr~~l~~~~~l~llf~ly~~~r~~~~~~~~~~~~~l~~~~l~cL~qLas 344 (971)
++.+.++++++.+.+... |+....+++||+++++
T Consensus 228 ----------------------------------yIfeTnIieLv~~~f~s~------------pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 228 ----------------------------------YIFETNIIELVLEHFNSM------------PDTRVATLSCLTEIVD 261 (1053)
T ss_pred ----------------------------------HHHHHHHHHHHHHHhccC------------CchhHHHHHHHHHHHh
Confidence 778888999998776544 7789999999999999
Q ss_pred ccc
Q 002082 345 LTG 347 (971)
Q Consensus 345 l~~ 347 (971)
+.+
T Consensus 262 L~~ 264 (1053)
T COG5101 262 LGR 264 (1053)
T ss_pred hcc
Confidence 975
No 4
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.1e-20 Score=227.06 Aligned_cols=345 Identities=16% Similarity=0.196 Sum_probs=244.4
Q ss_pred HHHHHHHHHhhC-CCC--HHHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 002082 33 HSIEIACSSIQM-HVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (971)
Q Consensus 33 ~~lE~~~~~ly~-~~~--r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~ 109 (971)
+-++++...++. +.+ |.+|++++.+|+..++.|..|..||+.|+++.++|||++.|++.|..+|+.+|..+|.++|+
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~ 90 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKN 90 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHH
Confidence 335555555554 333 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCC-----hhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCC-hhHHHHHHHHHHHHHhh
Q 002082 110 FCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHG-VDTQFIGINFLESLVSE 183 (971)
Q Consensus 110 ~ll~yl~~~~~~l-----~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~-~~~~~igl~iL~~lv~E 183 (971)
|+...+....+.. .+++++|++..++.|+||.|+.. |++|+.++.+....+.+ .+..++.+.+|++.|++
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~----wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~ 166 (1041)
T KOG2020|consen 91 YVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAI----WPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFD 166 (1041)
T ss_pred HHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhh----cchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhc
Confidence 9999999988666 68999999999999999999985 98999999998874322 36678899999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcccccccCCCC
Q 002082 184 FSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSG 263 (971)
Q Consensus 184 fs~~~ss~~gl~~~~Hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d 263 (971)
|+.... +-.++.-.+.+++. .+..||++|..+..++. .. ++.++|..+...++|.+.+
T Consensus 167 ~ss~~~-----~q~~~~il~~~~~~-~f~~i~~l~~~~~~~a~-----------~~-~~~atl~tl~~fl~wip~~---- 224 (1041)
T KOG2020|consen 167 FSSSEL-----TQQKIIILKNLLEN-EFQQIFTLCSYIKEKAN-----------SE-LLSATLETLLRFLEWIPLG---- 224 (1041)
T ss_pred ccchHH-----HhhhHHHHHHHhhH-HHHHHHHHHHHHHhhhh-----------hH-HHHHHHHHHHHHhhcccHH----
Confidence 987632 12234444666644 68999999988665432 23 9999999999999999987
Q ss_pred CcccccccccccccccCCCCCCcccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHh
Q 002082 264 RKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLC 343 (971)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Wr~~l~~~~~l~llf~ly~~~r~~~~~~~~~~~~~l~~~~l~cL~qLa 343 (971)
++.+.+.+..+...+-. .|.+...+++||.+++
T Consensus 225 -----------------------------------~I~~tn~l~~~l~~~ln------------~~~~r~~al~CL~ei~ 257 (1041)
T KOG2020|consen 225 -----------------------------------YIFETNILELLLNKFLN------------APELRNNALSCLTELL 257 (1041)
T ss_pred -----------------------------------HHHHhhhHHHHHHhccc------------hHHHHHHHHHHHHHHH
Confidence 44555556666554332 2678999999999999
Q ss_pred hcccCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCChh--hHH-HHHHHHHHHHhhcChhhHHHHhhc-cC
Q 002082 344 SLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSES--EML-DGCRALLSIATVTTPFVFDRLLKS-IR 419 (971)
Q Consensus 344 sl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~~--~~~-e~cr~L~rL~~~~~~~~~~~l~~~-~~ 419 (971)
+..+..+.... ..+++..+..+. .+.......+....+..++ .++ .+|..|..+...| ..++++ ..
T Consensus 258 s~~~~~~~~~~----~~~~~~~~~~l~-~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~-----~~lle~~~~ 327 (1041)
T KOG2020|consen 258 SRKRSIYERKT----VPMFNLTIYQLR-SIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQH-----IALLESSLS 327 (1041)
T ss_pred hccccchhHHh----HHHHHHHHHHHH-HhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHHH-----HHHHcCchh
Confidence 99887554322 245555555533 2211111222222333333 333 3333333333222 123322 10
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhcccCcchHHHHHHHHHHHHHhhhccccc
Q 002082 420 PFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDST 470 (971)
Q Consensus 420 ~~~~l~~L~~lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~ 470 (971)
. .+.+-..+..++..++++. ++.+..+|+.|..++.+..|.
T Consensus 328 ~---~~~~~~~~~~li~i~~~~~-------se~~~~~ld~W~~lv~~l~~~ 368 (1041)
T KOG2020|consen 328 Q---RPVLLEALLELILISTIEP-------SEIFKICLDYWNKLVADLYYN 368 (1041)
T ss_pred h---hhHHHHHHHHHHHHhccCc-------hhHHHHHHHHHHHHHHhhhcc
Confidence 0 1111122334444555442 588889999999999987764
No 5
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.1e-20 Score=201.89 Aligned_cols=515 Identities=57% Similarity=0.860 Sum_probs=368.1
Q ss_pred cCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHhhccc-CccCCCChhhHHHHHHHHHHh
Q 002082 290 VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTG-TVFPSDNGKMQEHHLLQLLSG 368 (971)
Q Consensus 290 ~~~p~~Wr~~l~~~~~l~llf~ly~~~r~~~~~~~~~~~~~l~~~~l~cL~qLasl~~-~~f~~~~~~~r~~yl~~~l~~ 368 (971)
++|..+|-+.+++...+.|+-++|...+++....+-|.+++.........+++|+..| -+|+......|.+.....++|
T Consensus 1 v~~y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~ 80 (748)
T KOG4541|consen 1 VKPYASWCDVLLSSSHVGWLTNLYSSVRQKFDLEGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTG 80 (748)
T ss_pred CcchHHHHHHHHhcCCcchHHHHHhhHHHHHhhhhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcC
Confidence 4678899999999999999999999988887666678888888888888899999999 689988877898899999999
Q ss_pred hhhhcCC-hhhhHHHhhhCCChhhHHHHHHHHHHH-HhhcChhhHHHHhhccCchhHHHHHHHHHHHHHH-------HHh
Q 002082 369 ILEWVDP-PDVVAQAIESGKSESEMLDGCRALLSI-ATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVK-------VLM 439 (971)
Q Consensus 369 ~~~il~~-~~~~~~~~~~gl~~~~~~e~cr~L~rL-~~~~~~~~~~~l~~~~~~~~~l~~L~~lt~~~i~-------~~~ 439 (971)
.-+..++ ++....-...|..-.++.+.||.|... +++.+. .+.....+..++|....++.+.-...+ .-+
T Consensus 81 ~edd~D~s~D~~~~~~~~gr~gae~c~~~~~lle~~~t~lh~-~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~ 159 (748)
T KOG4541|consen 81 VEDDIDPSPDVISKEIEEGRSGAEMCDGCRALLEIGTTTLHV-VFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLM 159 (748)
T ss_pred CCccCCcchhHHHHHHhcCchHHHHHHHHHHHHHhcccccHH-HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 444333334455557777888877665 333322 344444444556655555444433222 222
Q ss_pred hhhcccCcchHHHHHHHHHHHHHhhhc-ccccCCCCCCChhhhhhHHHHHHHHHHhccccccccccCCCCcccchhccHh
Q 002082 440 MNNTEEGTWSWEARDILLDTWTTLLVS-LDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASIS 518 (971)
Q Consensus 440 ~~~~~~~~~~~es~~~LL~~W~~lv~~-~~~~~~~~~~p~~l~~~~~~I~~~Yi~srL~~~~~~~~~d~e~de~~~~d~~ 518 (971)
-.+..|++|..++.+.++..|+.+-++ ++-.+.++=.|++.++.+..+++--+++-+.-+..++.-+ +++++.+...
T Consensus 160 ~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~--~~~~e~~~v~ 237 (748)
T KOG4541|consen 160 ANSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTE--DDADELASVS 237 (748)
T ss_pred HhccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhh--hhHHHHHHHH
Confidence 234567899999999999999988887 5555444446788888888888755576555444333222 2233343444
Q ss_pred HHHHHHHHHHHHHHh--cHhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHHhHhccC--CCCCcccCchh
Q 002082 519 AMDERLSSYALIARA--AIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADE--GEGEIPVVPNA 594 (971)
Q Consensus 519 ~~~eqL~~ia~l~R~--~~~~t~~lL~~l~~~~~~~l~~~~~~~~~~~~~E~L~WLv~i~g~~lad~--~~ge~~~ip~~ 594 (971)
..+++|-.-+.+.|. ..+.+.+.+..++.+..+++.+..+..+|....|.-+-+.+|+|++|++- .++|+.+.|+.
T Consensus 238 a~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~~y~~~s~~~~tv~p~~te~s~~~~~~ii~kVla~lvn~~sE~~L~~Da 317 (748)
T KOG4541|consen 238 AMDERLGSPALIARLARFLDATIPFLAKLFSDHYARLSQGRGTVDPTETEESVYSLLLIIGKVLADLVNGESETALVPDA 317 (748)
T ss_pred HHHHhccCHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHhcccchhhhhHHH
Confidence 556777666655552 36778888888999888888887776777666667666779999999987 78899999999
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHHHHhhcCccccccCCCHHHHHHHHHHHHHHHHhccCCcccccccCCCCCCCCCcc
Q 002082 595 IQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQ 674 (971)
Q Consensus 595 i~~~~~~~~~~~~d~vv~Lv~~l~~l~~~~l~~~~~~~~~Sp~L~~a~lwfl~~~~~~Yl~~~~d~~~~~~~~~~~~~~~ 674 (971)
++-++.-..++..+|++.++...+++.+.+++..++-..+||.+.++++|+|-.|.-+|+..++++. .++
T Consensus 318 ~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n----------~~~ 387 (748)
T KOG4541|consen 318 LQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECN----------LGS 387 (748)
T ss_pred HHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHH----------HHH
Confidence 9877665555577889888999999999998776767789999999999999999999997553322 111
Q ss_pred ccccchhhHHHhhhcCCCCchhHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhccccchhhHHcchHHHHHHHHhh
Q 002082 675 HQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFA 754 (971)
Q Consensus 675 ~~s~~~~~~l~~~fg~~~~~~~vl~~iv~ki~~nL~~w~~e~~v~~~t~~~LL~~L~~~~~~~~~l~~l~~~~~L~~~~~ 754 (971)
.+-++.+..+-.+|....++..+.+++++--.+.....+++.+.... .|++|+.-
T Consensus 388 ~~LqpL~~Rf~~~~nq~~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~-----------------------Lf~fL~~~-- 442 (748)
T KOG4541|consen 388 NKLQPLPSRFFTYFNQHNQGKFVLDIIVRLSLTSGTAYAGQKDLQRS-----------------------LFQFLVLS-- 442 (748)
T ss_pred hhccccHHHHHHHhcccchhhHHHHHHHHHHHhccccccccchhHHH-----------------------HHHHHHHH--
Confidence 22223345577777777777777787877777777777776665321 13333322
Q ss_pred ccccccccCchhhHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHhCCCCcccccChhhHHHHHHHH-HHHhhc
Q 002082 755 NDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCL-LERLRG 833 (971)
Q Consensus 755 ~~~~~~~l~~~~~r~l~~aL~~l~~~~~~~~~~~~~f~~~l~pl~~~~~~l~~~~~~~~~~~~~~v~~~v~~l-l~~LrG 833 (971)
+.++....+..+|.+..+.-+...|..+.+..+.....++++++.-+.++ +.+++|
T Consensus 443 -----------------------~~~c~glm~s~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~ 499 (748)
T KOG4541|consen 443 -----------------------AYGCRGLMASNQYVKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYG 499 (748)
T ss_pred -----------------------HhhhhhHHHHhhccHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhh
Confidence 11122222355677788888888888887765555455677777777777 999999
Q ss_pred hhhccCcCcHHHHHHHHHhhhHHHHHHHHhhc
Q 002082 834 AANATEPRTQKAIYEMGFSVMNPVLLLLEVYK 865 (971)
Q Consensus 834 i~~a~~~~s~~~lf~~l~~~l~~l~~l~~~y~ 865 (971)
-..+..++++...++--+..+..++++++.|.
T Consensus 500 ~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~l 531 (748)
T KOG4541|consen 500 AASATRPRTQRAIYEEGLSDLNLVLRLLENYL 531 (748)
T ss_pred hhcccCcchHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999888888888888887763
No 6
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=9.4e-11 Score=137.55 Aligned_cols=683 Identities=15% Similarity=0.119 Sum_probs=354.2
Q ss_pred CChHhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCC
Q 002082 23 ADLAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFL 99 (971)
Q Consensus 23 md~~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l 99 (971)
||...+ +++|.+...+|.+++ .+.++++|.+.+.++++|+..+.+|+-.+++.+|||+|.+|...+.++|...
T Consensus 1 md~~~I----a~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~ 76 (982)
T KOG2022|consen 1 MDSDLI----ATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEEC 76 (982)
T ss_pred CCchHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccC
Confidence 555566 999999999999864 5889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCCh-----hHHHHHH
Q 002082 100 TADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-----DTQFIGI 174 (971)
Q Consensus 100 ~~~~k~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~-----~~~~igl 174 (971)
+++++.+|+.-++.-+.... ..++.|.+|++-.+|..+=.-=+| .|+.-+.++.+.++.+.+| -+|.+-+
T Consensus 77 ~~~~~~qL~~klf~~l~~~~-g~~~lVl~kl~~sLasl~l~~~~d----~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~L 151 (982)
T KOG2022|consen 77 PANEAVQLKLKLFLILSRFA-GGPKLVLNKLCASLASLILYMVPD----LWPTAIQDVIPTLQGQASPLVLADINCEILL 151 (982)
T ss_pred ChhHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHccc----cCCchHHHHHHHHhcccCccccchhhHHHHH
Confidence 99999999999999888776 469999999988888876555555 5888899999988754454 3445555
Q ss_pred HHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcc
Q 002082 175 NFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN 254 (971)
Q Consensus 175 ~iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls 254 (971)
..|+.+-.||... .+|..+--..+.. |...-.....+++.++.+.-+.+.+....-.-..+++|..
T Consensus 152 e~Ls~~p~e~q~~-----~l~~t~~~~l~~e-----Lak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~---- 217 (982)
T KOG2022|consen 152 EVLSFMPAEFQHV-----TLPLTRRSVLRGE-----LAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVE---- 217 (982)
T ss_pred HHhccCcHhhhhc-----cchhHHHHHHHHH-----HHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHH----
Confidence 5665555555432 4444432222211 2222222222333333222111111001111123333332
Q ss_pred cccccCCCCCcccccccccccccccCCCCCCcccccCCCccchHhhcccc-----hHHHHHHH-HHHHHhccccC-----
Q 002082 255 WDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSG-----HIVWLLNL-YSALRQKFSSE----- 323 (971)
Q Consensus 255 wdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Wr~~l~~~~-----~l~llf~l-y~~~r~~~~~~----- 323 (971)
+|-.++.-|. +.+.+++. |....+.+-.+
T Consensus 218 ----------------------------------------~Wi~~i~~~~~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt 257 (982)
T KOG2022|consen 218 ----------------------------------------QWIRYISLTGMDCDQITQVLLDVLGQSTEGSYEAAEKCMT 257 (982)
T ss_pred ----------------------------------------HHHHHhccccccHHHHHHHHHHHHhhhccccccchhhhcc
Confidence 2443333221 11222221 11111100000
Q ss_pred ---CCCCCccchHHHHHHHHHHhhcccCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCC--hhhHHHHHHH
Q 002082 324 ---GYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKS--ESEMLDGCRA 398 (971)
Q Consensus 324 ---~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~--~~~~~e~cr~ 398 (971)
+.--++++...+..|+...|--.+. . ..-+-.+..+ +++....-.+. .++.+ +++++.||++
T Consensus 258 ~~~n~la~~~l~~~v~~i~q~d~~~y~n-----t----i~~li~i~~~---~l~e~~~~~~~-~e~~d~~~e~i~~~~~i 324 (982)
T KOG2022|consen 258 IFGNVLADDTLLASVNDIIQPDCEFYRN-----T----ITLLISICLG---ILQEVSGKIQE-EENADASEEEIVTFLAI 324 (982)
T ss_pred cchhhhccchHHHHHHHhcChHHHhccc-----h----HHHHHHHHHH---HHHHHHHHHHH-HhCCCchhHHHHHHHHH
Confidence 0000122223333333333322111 0 1111222222 12211111111 23443 5899999999
Q ss_pred HHHHHhhcChhhHHHHhhccCchhHHHHHHHHHHHHHHHHhhh-hcccCcchHHHHHH-HHHHHHHhhhcccccCCCCCC
Q 002082 399 LLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMN-NTEEGTWSWEARDI-LLDTWTTLLVSLDSTGRNVVL 476 (971)
Q Consensus 399 L~rL~~~~~~~~~~~l~~~~~~~~~l~~L~~lt~~~i~~~~~~-~~~~~~~~~es~~~-LL~~W~~lv~~~~~~~~~~~~ 476 (971)
.-..+.|+.+..+..+.. | ...++...++..-..- .++.--.-.|.+-. -|++|..|-+++-...+. +.
T Consensus 325 ~v~~~En~l~~lid~~~~-----g---~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e-~~ 395 (982)
T KOG2022|consen 325 TVSSVENHLPTLIDCAAQ-----G---EQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINE-TQ 395 (982)
T ss_pred HHHHHhcccHHHHHHHhh-----c---chHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhc-cC
Confidence 999999986544433311 1 1222333333322211 11111122344443 489999999887655432 34
Q ss_pred Chhhh----hhHHHHHHHHHHhccccccccccCCCCcccchhccHhHHHHHHHHHHHHHHhcHhhhHHHHHHHHHHHHHH
Q 002082 477 PLEVR----NAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFAR 552 (971)
Q Consensus 477 p~~l~----~~~~~I~~~Yi~srL~~~~~~~~~d~e~de~~~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~ 552 (971)
++.-. +...++++.|+.- ++.|.... ..+-+-|+++-|+.-=.-++-+.-..|+-...-|+..+-+.+.+
T Consensus 396 ~~~~~i~~~qIy~qlvei~l~K-~~~Ps~e~-----~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q 469 (982)
T KOG2022|consen 396 QIKKQILSQQIYAQLVEILLKK-LALPSKEI-----WLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLIDTLEQ 469 (982)
T ss_pred CcchhHHHHHHHHHHHHHHHHH-hcCCCHHH-----hccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44333 3345666666553 33333211 11111223333333322333333333333333333333333333
Q ss_pred HhcccCCCCCchhHHHHHHHHHHHHhHhccCCCCCcccCchhhhhhhhhhhhcccchHHHHHHHHHHHHHhhcCcccccc
Q 002082 553 LHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARAS 632 (971)
Q Consensus 553 l~~~~~~~~~~~~~E~L~WLv~i~g~~lad~~~ge~~~ip~~i~~~~~~~~~~~~d~vv~Lv~~l~~l~~~~l~~~~~~~ 632 (971)
....+ ..+| ..++.+--+++-.-.+..+.++.|.+.+|. +|+.+-. .+ .+
T Consensus 470 ~~aa~-d~~p-~s~~~tEaci~~~~sva~~~~~t~~~~i~r-----------------------l~~~~as-ik----~S 519 (982)
T KOG2022|consen 470 ALAAG-DEDP-DSLNRTEACIFQFQSVAEYLGETESTWIPR-----------------------LFETSAS-IK----LS 519 (982)
T ss_pred hhhcc-CCCc-hHHHHHHHHHHHHHHHHhhcCcchhHHHHH-----------------------HHHhccc-cc----cc
Confidence 32222 1234 455555566665555544444444433332 2332211 11 22
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCcccccccCCCCCCCCCccccccchhhHHHhhhcCCCCchhHHHHHHHHHHHhccCC
Q 002082 633 VFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSY 712 (971)
Q Consensus 633 ~~Sp~L~~a~lwfl~~~~~~Yl~~~~d~~~~~~~~~~~~~~~~~s~~~~~~l~~~fg~~~~~~~vl~~iv~ki~~nL~~w 712 (971)
...|++..+....++.. .-|++..+ .+ - ++.+...|...+....
T Consensus 520 ~~n~ql~~Tss~~igs~-s~~l~e~P-~~------------l------n~sl~~L~~~Lh~sk~---------------- 563 (982)
T KOG2022|consen 520 APNPQLLSTSSDLIGSL-SNWLGEHP-MY------------L------NPSLPLLFQGLHNSKE---------------- 563 (982)
T ss_pred cCChhHHHHHHHHHHHH-HHHHhcCC-cc------------c------CchHHHHHHHhcCchH----------------
Confidence 34788888887777665 34565221 11 1 2234444433321111
Q ss_pred CCchhHHHHHHHHHHHHHhccccchhhHHcc----hHHHHHHHHhhccccccccCchhhHHHHHHHHHHHhcCCCchhhH
Q 002082 713 PGEKDLQELTCNQLLHALVRRKNVCVHLVAL----GSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSN 788 (971)
Q Consensus 713 ~~e~~v~~~t~~~LL~~L~~~~~~~~~l~~l----~~~~~L~~~~~~~~~~~~l~~~~~r~l~~aL~~l~~~~~~~~~~~ 788 (971)
.+ .++ .-+..|++... . .+ +.|-..+.... +=++..++.+..+|++++.+.+... +|+.-
T Consensus 564 ----s~--q~i-~tl~tlC~~C~---~--~L~py~d~~~a~~~e~l---~~~~~~~S~~~klm~sIGyvls~~~-pEe~~ 627 (982)
T KOG2022|consen 564 ----SE--QAI-STLKTLCETCP---E--SLDPYADQFSAVCYEVL---NKSNAKDSDRLKLMKSIGYVLSRLK-PEEIP 627 (982)
T ss_pred ----HH--HHH-HHHHHHHHhhh---h--hCchHHHHHHHHHHHHh---cccccCchHHHHHHHHHHHHHHhcc-HHhHH
Confidence 11 111 22344444321 1 11 12222222211 1122235567789999999988665 66777
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccccChhhHHHHHHHHHHHhhchhhccCcC---------cHH-------HHHHHHHh
Q 002082 789 QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR---------TQK-------AIYEMGFS 852 (971)
Q Consensus 789 ~~f~~~l~pl~~~~~~l~~~~~~~~~~~~~~v~~~v~~ll~~LrGi~~a~~~~---------s~~-------~lf~~l~~ 852 (971)
.|..+++.|+-..++..+... .+.++-+..++-.+-.+--+..+..++ ... .+-..+..
T Consensus 628 kyl~~lin~il~qle~~l~~~-----i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k 702 (982)
T KOG2022|consen 628 KYLMKLINPILSQLEINLAPG-----IDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQK 702 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCC-----CCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHH
Confidence 899999999999887775431 111222222333444444443333221 111 45677788
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 002082 853 VMNPVLLLLEVYKHESAVVYLLLKFVVDWVD 883 (971)
Q Consensus 853 ~l~~l~~l~~~y~~~p~Vv~~iLkf~~elv~ 883 (971)
.++.+-++.+.|-++.+||..+.+-|.-=+.
T Consensus 703 ~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~ 733 (982)
T KOG2022|consen 703 AIPVFEKVLSMWLGLSDVVEASCIIMVKGVR 733 (982)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHhccc
Confidence 8999999999999999999877766654433
No 7
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.4e-10 Score=133.43 Aligned_cols=261 Identities=12% Similarity=0.097 Sum_probs=201.7
Q ss_pred HHHHHHHHHHhhCCC-C---HHHHHHHHHHhhcCCChHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCCCCHHHHHH
Q 002082 32 MHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (971)
Q Consensus 32 ~~~lE~~~~~ly~~~-~---r~~Ae~~L~~f~~~~~~~~~c~~iLe~S-~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~ 106 (971)
|+.+|+|+.....|. + ++||-.++.+.|.+|++|+.|-.+|-++ +++.++||++++|.+.+....+..+..+..-
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 467899999988873 3 8999999999999999999999999766 8899999999999999988778799999999
Q ss_pred HHHHHHHHHHHc--C---CCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 002082 107 LIGFCLCFVMQH--A---SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (971)
Q Consensus 107 lr~~ll~yl~~~--~---~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv 181 (971)
+|.-+..|+... + ..+|+|++||+.++++-+.=..+++ .|++|+.++...+.-....+..-.=|++|.++=
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~----~WnsfF~dlmsv~~~~s~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD----CWNSFFDDLMSVFQVDSAISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhcccchhhHHHHHHHHHHhh
Confidence 999999887654 1 1358999999999999999998888 499999999887763111233556677777777
Q ss_pred hhhCCCCCCCCCCCHH---HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcccccc
Q 002082 182 SEFSPSTSSAMGLPRE---FHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQ 258 (971)
Q Consensus 182 ~Efs~~~ss~~gl~~~---~Hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~ 258 (971)
.|..... +-.+.+ +.-..|-.+|+.+.++|-..-.++++.-.. ...+.+...+|+|+-+..||+=+
T Consensus 158 sEiad~d---v~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n--------~~npgl~~~cLdc~g~fVSWIdI 226 (980)
T KOG2021|consen 158 SEIADQD---VIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYEN--------IVNPGLINSCLDCIGSFVSWIDI 226 (980)
T ss_pred hHhhhcc---ccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHhhhhhh
Confidence 7775431 122223 344559999999999998888888753221 12467889999999999999977
Q ss_pred cCCCCCcccccccccccccccCCCCCCcccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHH
Q 002082 259 FDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKL 338 (971)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Wr~~l~~~~~l~llf~ly~~~r~~~~~~~~~~~~~l~~~~l~c 338 (971)
+ .+.+...++++|.+-. + ..+...|-.|
T Consensus 227 n---------------------------------------LIaNd~f~nLLy~fl~-i------------eelR~aac~c 254 (980)
T KOG2021|consen 227 N---------------------------------------LIANDYFLNLLYKFLN-I------------EELRIAACNC 254 (980)
T ss_pred h---------------------------------------hhhchhHHHHHHHHHh-H------------HHHHHHHHHH
Confidence 6 4456668888887643 3 4578889999
Q ss_pred HHHHhhcccCccCCCChhhHHHHHHHH
Q 002082 339 IVQLCSLTGTVFPSDNGKMQEHHLLQL 365 (971)
Q Consensus 339 L~qLasl~~~~f~~~~~~~r~~yl~~~ 365 (971)
+..+.|.+-.-. ++...+..+
T Consensus 255 ilaiVsKkMkP~------dKL~lln~L 275 (980)
T KOG2021|consen 255 ILAIVSKKMKPM------DKLALLNML 275 (980)
T ss_pred HHHHHhcCCChh------HHHHHHHHH
Confidence 999999876422 355555544
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=7.4e-07 Score=108.94 Aligned_cols=147 Identities=20% Similarity=0.218 Sum_probs=131.0
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 002082 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (971)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ 110 (971)
++|+++...+..|.| |++||+.+...-..+.......+|+..+.+|.++=+|+-.+|+++++.|+.++.+.|.+||.-
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~ 83 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSS 83 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 678999999999976 899999999554444488888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhCCC
Q 002082 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (971)
Q Consensus 111 ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~Efs~~ 187 (971)
+|.-+.+- ..+-||.|++.++|.|.|-.-++ .|+..++-+.+..++ .++..+..++.||..+.+-|+..
T Consensus 84 lL~~~~~E---~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 84 LLEIIQSE---TEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHhc---cchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccc
Confidence 99987764 47899999999999999988766 598888888888876 68899999999999999999765
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.5e-06 Score=96.99 Aligned_cols=579 Identities=18% Similarity=0.212 Sum_probs=308.4
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHhhcCCChHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q 002082 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENS--QVANARFQAAAAIRDAAMREWSFLTADEKKSLI 108 (971)
Q Consensus 33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~iLe~S--~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr 108 (971)
+|+-++.+.-.+|.. |+.+...+.+|+..|+--...-+||-+. .+.-++-.|--.|++-+.-.|+.++++...-+|
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 444444444444432 7899999999999998766666777544 445667777778999999999999998887777
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhCCCC
Q 002082 109 GFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPST 188 (971)
Q Consensus 109 ~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~Efs~~~ 188 (971)
.-+++-+. +.++.+|.-.-.++-.|+-.|-.. +|+..++.+.+++.+. +++.
T Consensus 93 s~~l~~lg----d~~~lIr~tvGivITTI~s~~~~~----~wpelLp~L~~~L~s~------------------d~n~-- 144 (885)
T KOG2023|consen 93 SECLHGLG----DASPLIRATVGIVITTIASTGGLQ----HWPELLPQLCELLDSP------------------DYNT-- 144 (885)
T ss_pred HHHHhhcc----CchHHHHhhhhheeeeeecccccc----cchhHHHHHHHHhcCC------------------cccc--
Confidence 77776543 345566666555555555444333 4777888888888631 1110
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcccccccCCCCCcccc
Q 002082 189 SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISI 268 (971)
Q Consensus 189 ss~~gl~~~~Hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~ 268 (971)
|--+| ..|.+|++=+-+.|..- +. +
T Consensus 145 -------------~EgA~--~AL~KIcEDsa~~lds~-------------------------------~~-~-------- 169 (885)
T KOG2023|consen 145 -------------CEGAF--GALQKICEDSAQFLDSD-------------------------------VL-T-------- 169 (885)
T ss_pred -------------cchhH--HHHHHHHhhhHHHHhhh-------------------------------cc-c--------
Confidence 11122 23555544322222100 00 0
Q ss_pred cccccccccccCCCCCCcccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHhhcccC
Q 002082 269 NVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGT 348 (971)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~p~~Wr~~l~~~~~l~llf~ly~~~r~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~ 348 (971)
+| ++. .+.-|+.+|.+. .|.++++|+.|+.|+.-++..
T Consensus 170 ----------------------rp--------l~~-mipkfl~f~~h~-----------spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 170 ----------------------RP--------LNI-MIPKFLQFFKHP-----------SPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred ----------------------Cc--------hHH-hHHHHHHHHhCC-----------ChhHHHHHHhhhhheeecCcH
Confidence 00 111 455666666543 378999999999999866543
Q ss_pred ccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCCh-hhH-HHHHHHHHHHHhhcChhhHHHHhhccCchhHHHH
Q 002082 349 VFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEM-LDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTL 426 (971)
Q Consensus 349 ~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~-~e~cr~L~rL~~~~~~~~~~~l~~~~~~~~~l~~ 426 (971)
-+ ..++-.+++++..+-. ++ ++. -..||.|.-|-.+++ . ++. +.+..
T Consensus 208 al--------~~~iD~Fle~lFalan-------------D~~~eVRk~vC~alv~Llevr~-d---kl~------phl~~ 256 (885)
T KOG2023|consen 208 AL--------YVHIDKFLEILFALAN-------------DEDPEVRKNVCRALVFLLEVRP-D---KLV------PHLDN 256 (885)
T ss_pred HH--------HHHHHHHHHHHHHHcc-------------CCCHHHHHHHHHHHHHHHHhcH-H---hcc------cchHH
Confidence 22 2244444444433321 22 333 368999888777653 1 222 12333
Q ss_pred HHHHHHHHHHHHhhhhcccCcchHHHHHHHHHHHHHhhhcccccCCCCCCChh-hhhhHHHHHH----------------
Q 002082 427 LSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLE-VRNAAASLFA---------------- 489 (971)
Q Consensus 427 L~~lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~~-l~~~~~~I~~---------------- 489 (971)
+.+++.+. +. ..|+..+.||. ++|..+.+.- .+++ +..+.+++.-
T Consensus 257 IveyML~~----tq--d~dE~VALEAC----EFwla~aeqp--------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL 318 (885)
T KOG2023|consen 257 IVEYMLQR----TQ--DVDENVALEAC----EFWLALAEQP--------ICKEVLQPYLDKLIPVLLSGMVYSDDDIILL 318 (885)
T ss_pred HHHHHHHH----cc--CcchhHHHHHH----HHHHHHhcCc--------CcHHHHHHHHHHHHHHHHccCccccccHHHh
Confidence 33333321 11 23333444444 6777776631 2221 2222222222
Q ss_pred ------------------HHHHhccccccccccCCCCcccch------hccHhHHHHHHHHHHHHHHhcHhhhHHHHHHH
Q 002082 490 ------------------LIVESELKVASASAMDDNGEFNYL------QASISAMDERLSSYALIARAAIDATVPLLTRL 545 (971)
Q Consensus 490 ------------------~Yi~srL~~~~~~~~~d~e~de~~------~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l 545 (971)
.|.++|...-.... +|+|+|||+ ..||..++..=..+..++-.-+++.++.+..+
T Consensus 319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~-~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDA-DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred cCccccccCCchhhhccchhhhchhccCcccc-ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 22222221111111 111111111 22354555555566666667778888888888
Q ss_pred HHHHHHHHhcccCCCCCchhHHHHHHHHHHHHhHh----c-cCCCCCcccCchhhhhhhhhhhhcccchHHHHHHHHHHH
Q 002082 546 FSERFARLHQGRGMIDPTETLEELYSLLLITGHVL----A-DEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKF 620 (971)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~~E~L~WLv~i~g~~l----a-d~~~ge~~~ip~~i~~~~~~~~~~~~d~vv~Lv~~l~~l 620 (971)
+.+.+. .+ .|.+.=+|-+- | +.-+|=.|..|+ |+--++++
T Consensus 398 Lk~~L~--------~~--------~W~vrEagvLAlGAIAEGcM~g~~p~Lpe-------------------Lip~l~~~ 442 (885)
T KOG2023|consen 398 LKEHLS--------SE--------EWKVREAGVLALGAIAEGCMQGFVPHLPE-------------------LIPFLLSL 442 (885)
T ss_pred HHHHcC--------cc--------hhhhhhhhHHHHHHHHHHHhhhcccchHH-------------------HHHHHHHH
Confidence 886652 11 36664443322 2 222333333332 22222232
Q ss_pred HHhhcCccccccCCCHHHHHHHHHHHHHHHHhccCCcccccccCCCCCCCCCccccccchhhHHHhhhcCCCCchhHHHH
Q 002082 621 AEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDI 700 (971)
Q Consensus 621 ~~~~l~~~~~~~~~Sp~L~~a~lwfl~~~~~~Yl~~~~d~~~~~~~~~~~~~~~~~s~~~~~~l~~~fg~~~~~~~vl~~ 700 (971)
++.. .|-+-.-.-|-|.|| ..|+..++ . .+-+ ..|+.-
T Consensus 443 ----L~DK------kplVRsITCWTLsRy-s~wv~~~~--~-------------------~~~f----------~pvL~~ 480 (885)
T KOG2023|consen 443 ----LDDK------KPLVRSITCWTLSRY-SKWVVQDS--R-------------------DEYF----------KPVLEG 480 (885)
T ss_pred ----hccC------ccceeeeeeeeHhhh-hhhHhcCC--h-------------------Hhhh----------HHHHHH
Confidence 2211 133333445888888 45665321 0 0011 145666
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHHHHhccccchhhHHc--chHHHHHHHHhhccccccccCchhhHHHHHHHHHHH
Q 002082 701 IVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVA--LGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSA 778 (971)
Q Consensus 701 iv~ki~~nL~~w~~e~~v~~~t~~~LL~~L~~~~~~~~~l~~--l~~~~~L~~~~~~~~~~~~l~~~~~r~l~~aL~~l~ 778 (971)
++++++. +..+|.+.+| .-|-.|-... +..|+- .+..+.|+.++..- -.+.-.-+|-|+++++
T Consensus 481 ll~~llD------~NK~VQEAAc-sAfAtleE~A--~~eLVp~l~~IL~~l~~af~kY------Q~KNLlILYDAIgtlA 545 (885)
T KOG2023|consen 481 LLRRLLD------SNKKVQEAAC-SAFATLEEEA--GEELVPYLEYILDQLVFAFGKY------QKKNLLILYDAIGTLA 545 (885)
T ss_pred HHHHHhc------ccHHHHHHHH-HHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHH------hhcceehHHHHHHHHH
Confidence 7777776 4667888877 4444444332 222220 02233333333110 0011123899999987
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHhCCCCcccccChhhHHHHHHHHHHHhhchhhccCcC--cH-HHHHHHHHhhhH
Q 002082 779 YGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR--TQ-KAIYEMGFSVMN 855 (971)
Q Consensus 779 ~~~~~~~~~~~~f~~~l~pl~~~~~~l~~~~~~~~~~~~~~v~~~v~~ll~~LrGi~~a~~~~--s~-~~lf~~l~~~l~ 855 (971)
-+..+.=...+|.+-+|.||-++...|.+.. .+ +.-+|+||..|+.|.... .| .-+|+-+...+.
T Consensus 546 dsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D--------Kd----LfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~ 613 (885)
T KOG2023|consen 546 DSVGHALNKPAYIQILMPPLIEKWELLSDSD--------KD----LFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQ 613 (885)
T ss_pred HHHHHhcCcHHHHHHhccHHHHHHHhcCccc--------ch----HHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHH
Confidence 6443322256799999999999998776532 23 448999999999998765 22 344444444444
Q ss_pred HHHHHHHhhcCChHHH-------HHHHHHHHHHHhccccccC
Q 002082 856 PVLLLLEVYKHESAVV-------YLLLKFVVDWVDGQISYLE 890 (971)
Q Consensus 856 ~l~~l~~~y~~~p~Vv-------~~iLkf~~elv~n~~~~l~ 890 (971)
.+..++..-.++|.++ ..-|.|+.-+++.....+.
T Consensus 614 ~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie 655 (885)
T KOG2023|consen 614 KTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIE 655 (885)
T ss_pred HHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchH
Confidence 4455555555555544 3567888888776544443
No 10
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.84 E-value=7.4e-08 Score=95.33 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhCCC-CCCCCCCCHHHHHH
Q 002082 123 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS-TSSAMGLPREFHEQ 201 (971)
Q Consensus 123 ~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~Efs~~-~ss~~gl~~~~Hrk 201 (971)
|+||++|++++++.|.|+.||+. |++|++++.+.++ .++.+...++.+|..+.+|+... +. .++.++++.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~--~~~~~~~~~L~iL~~l~eEi~~~~~~---~~~~~r~~~ 71 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQ--SSPQHLELVLRILRILPEEITDFRRS---SLSQERRRE 71 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSHCC---HSHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHhhhch---hhhHHHHHH
Confidence 68999999999999999999884 8899999999998 47899999999999999999763 22 344555666
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcccccccCCCCCcccccccccccccccCC
Q 002082 202 CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSS 281 (971)
Q Consensus 202 ~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~ 281 (971)
.+..++.. ...||....+++...... ....+...+|+++.++++|....
T Consensus 72 l~~~l~~~-~~~i~~~l~~~l~~~~~~--------~~~~~~~~~L~~l~s~i~~~~~~---------------------- 120 (148)
T PF08389_consen 72 LKDALRSN-SPDILEILSQILSQSSSE--------ANEELVKAALKCLKSWISWIPIE---------------------- 120 (148)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHCHC--------CHHHHHHHHHHHHHHHTTTS-HH----------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhccc--------cHHHHHHHHHHHHHHHHHhCCHH----------------------
Confidence 67778655 888888877777644311 12678899999999999987765
Q ss_pred CCCCcccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHH
Q 002082 282 SKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI 339 (971)
Q Consensus 282 ~~~~~~~~~~~p~~Wr~~l~~~~~l~llf~ly~~~r~~~~~~~~~~~~~l~~~~l~cL 339 (971)
.+.+..+++++|++. + ++.+...|.+||
T Consensus 121 -----------------~i~~~~~l~~~~~~l----~---------~~~~~~~A~~cl 148 (148)
T PF08389_consen 121 -----------------LIINSNLLNLIFQLL----Q---------SPELREAAAECL 148 (148)
T ss_dssp -----------------HHHSSSHHHHHHHHT----T---------SCCCHHHHHHHH
T ss_pred -----------------HhccHHHHHHHHHHc----C---------CHHHHHHHHHhC
Confidence 445666888888764 2 377889999997
No 11
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.0044 Score=75.58 Aligned_cols=148 Identities=16% Similarity=0.262 Sum_probs=124.7
Q ss_pred CChHhHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHhhcCCChHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhccCC--
Q 002082 23 ADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWSF-- 98 (971)
Q Consensus 23 md~~~l~~~~~~lE~~~~~ly~~~~-r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~-y~~f~a~~~L~~~i~~~W~~-- 98 (971)
||.+.+ ++.+-..+-.+++ |+.||+.|.++.+.|.-...|-+|.-....+ -|+--|+--+++.|++.|..
T Consensus 1 md~~~l------~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSL------LQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred CChHHH------HHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 676666 4444445555444 9999999999999999999999999777777 45899999999999999976
Q ss_pred -------CCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHH
Q 002082 99 -------LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQF 171 (971)
Q Consensus 99 -------l~~~~k~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~ 171 (971)
+++++|.-+|+-++.++.+. |..+|.++..++-.|+|-..++ .|+.+++-+..++++ ++..+..
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~----p~~iRvql~~~l~~Ii~~D~p~----~Wp~l~d~i~~~Lqs-~~~~~vy 145 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQV----PELIRVQLTACLNTIIKADYPE----QWPGLLDKIKNLLQS-QDANHVY 145 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHhcCCcc----cchhHHHHHHHHhcC-cchhhHH
Confidence 47899999999999999875 6899999999999999998876 599999999999985 5667888
Q ss_pred HHHHHHHHHHhhhC
Q 002082 172 IGINFLESLVSEFS 185 (971)
Q Consensus 172 igl~iL~~lv~Efs 185 (971)
-||-.|..|+.-+-
T Consensus 146 ~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 146 GALLCLYQLFKTYE 159 (1010)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987554
No 12
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.57 E-value=2.2e-07 Score=81.24 Aligned_cols=67 Identities=27% Similarity=0.352 Sum_probs=62.8
Q ss_pred HHHHHHHhhcC-CChHHHHHHHH-hcCCchhHHHHHHHHHHHHHhhccC--------CCCHHHHHHHHHHHHHHHHH
Q 002082 51 AEATILGLCQS-PQPYKACQFIL-ENSQVANARFQAAAAIRDAAMREWS--------FLTADEKKSLIGFCLCFVMQ 117 (971)
Q Consensus 51 Ae~~L~~f~~~-~~~~~~c~~iL-e~S~~~y~~f~a~~~L~~~i~~~W~--------~l~~~~k~~lr~~ll~yl~~ 117 (971)
||+.|.+|++. |+.+..|..|+ +.+.+++++++|+..|++.|.++|. .+|+++|..||++|++.+.+
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~~ 77 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLLQ 77 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999 89999999999 5566899999999999999999999 99999999999999998863
No 13
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00083 Score=77.38 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 002082 49 AAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQA 128 (971)
Q Consensus 49 ~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~yl~~~~~~l~~~V~~ 128 (971)
..|-++|.+||+++++|..|..||..-...++..||+++++..+.+....+|+.+-.++|+-++..+..-. +.++-++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~-~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELH-DHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHH-hCCchHHH
Confidence 35889999999999999999999988888899999999999999999999999999999998888777666 34558888
Q ss_pred HHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhCCCC
Q 002082 129 KISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPST 188 (971)
Q Consensus 129 ~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~Efs~~~ 188 (971)
+++-.+|.+.=+ . .+|.+-+.|+.+..++ .+...+.-+.+|..+=+|+...+
T Consensus 81 QL~vavA~Lal~----~--~~W~n~I~e~v~~~~~--~~~~~~~lLeiL~VlPEE~~~~~ 132 (559)
T KOG2081|consen 81 QLAVAVAALALH----M--PEWVNPIFELVRALSN--KHPAVPILLEILKVLPEETRDIR 132 (559)
T ss_pred HHHHHHHHHHHH----h--HhhcchHHHHHHHhhc--CCccHHHHHHHHHhCcHhhcchh
Confidence 888777766421 1 1344556676666653 33335677888888888887653
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.038 Score=65.91 Aligned_cols=140 Identities=13% Similarity=0.078 Sum_probs=98.4
Q ss_pred HHHhhCCC-C-HHHHHHHHHHhhcCCCh--HHHHHHHH-hcCCchhHHHHHHHHHHHHHh-----------hccCCCCHH
Q 002082 39 CSSIQMHV-N-PAAAEATILGLCQSPQP--YKACQFIL-ENSQVANARFQAAAAIRDAAM-----------REWSFLTAD 102 (971)
Q Consensus 39 ~~~ly~~~-~-r~~Ae~~L~~f~~~~~~--~~~c~~iL-e~S~~~y~~f~a~~~L~~~i~-----------~~W~~l~~~ 102 (971)
|.....|. | |++||+.|.++++..-+ ....-.+| ..-+++++++.|.-.|++.++ .+|-.++.+
T Consensus 7 le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e 86 (859)
T KOG1241|consen 7 LEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAE 86 (859)
T ss_pred HHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHH
Confidence 33344452 3 89999999999976543 23333455 444667999999999998765 679999999
Q ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHh
Q 002082 103 EKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (971)
Q Consensus 103 ~k~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~ 182 (971)
.|+++|++++.-+. +..+.+.+...+++|.|..-+-|.+ .|+.++..+..-+....+..+..-.|.-|.=+.+
T Consensus 87 ~reqVK~~il~tL~----~~ep~~~s~Aaq~va~IA~~ElP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 87 IREQVKNNILRTLG----SPEPRRPSSAAQCVAAIACIELPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHHHHHHHHHHHcC----CCCCCccchHHHHHHHHHHhhCchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 99999999998764 3567778888999999998888774 6888988888777542233223333333333444
Q ss_pred hhC
Q 002082 183 EFS 185 (971)
Q Consensus 183 Efs 185 (971)
+..
T Consensus 160 ~i~ 162 (859)
T KOG1241|consen 160 DID 162 (859)
T ss_pred cCC
Confidence 433
No 15
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.031 Score=67.12 Aligned_cols=162 Identities=13% Similarity=0.139 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhccC-------CCCHHHHHHHHHHHHHHHHHcC
Q 002082 48 PAAAEATILGLCQSPQPYKACQFILENSQ-VANARFQAAAAIRDAAMREWS-------FLTADEKKSLIGFCLCFVMQHA 119 (971)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~-~~y~~f~a~~~L~~~i~~~W~-------~l~~~~k~~lr~~ll~yl~~~~ 119 (971)
|+-||+.|.+...++...-....++.+++ .+..+.-|+..+++.+.|+|. .+..++|+.||.-++....+.
T Consensus 22 rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s- 100 (960)
T KOG1992|consen 22 RKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSS- 100 (960)
T ss_pred CchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcC-
Confidence 89999999999988777667778888887 668999999999999999994 467789999999999987754
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHH-HHhhhCCC-CCCCCCCCHH
Q 002082 120 SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLES-LVSEFSPS-TSSAMGLPRE 197 (971)
Q Consensus 120 ~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~-lv~Efs~~-~ss~~gl~~~ 197 (971)
+.-+..++..++-.|.|+.+|+. |++.++|+...+++ +--+...|..-..+ +---|... +|.. =|.
T Consensus 101 ---~~~iQ~qlseal~~Ig~~DFP~k----WptLl~dL~~~ls~--~D~~~~~gVL~tahsiFkr~R~efrSda---L~~ 168 (960)
T KOG1992|consen 101 ---PFNIQKQLSEALSLIGKRDFPDK----WPTLLPDLVARLSS--GDFNVINGVLVTAHSIFKRYRPEFRSDA---LWL 168 (960)
T ss_pred ---cHHHHHHHHHHHHHHhccccchh----hHHHHHHHHhhccc--cchHHHHHHHHHHHHHHHhcCcccccHH---HHH
Confidence 46678888999999999999996 99999999999973 33334455444443 33333332 3311 244
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002082 198 FHEQCRISLELDYLKTFYCWARDAAL 223 (971)
Q Consensus 198 ~Hrk~~~~f~~~~L~~if~~~~~~L~ 223 (971)
.=.+|--.| ..-|.++|+...+..+
T Consensus 169 EIK~vLd~f-~~Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 169 EIKLVLDRF-AEPLTDLFRKTMELIQ 193 (960)
T ss_pred HHHHHHHhh-HhHHHHHHHHHHHHHh
Confidence 444555555 3446667776665543
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0063 Score=72.41 Aligned_cols=156 Identities=11% Similarity=0.065 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHH-hcCCchhHHHHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHcCCC
Q 002082 48 PAAAEATILGLCQSPQPYKACQFIL-ENSQVANARFQAAAAIRDAAMREW-----SFLTADEKKSLIGFCLCFVMQHASS 121 (971)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~c~~iL-e~S~~~y~~f~a~~~L~~~i~~~W-----~~l~~~~k~~lr~~ll~yl~~~~~~ 121 (971)
++-||+.|.++...|.-......|. ..+.+.-+++.|+--+++.|.|.| ..+|+++|..||.-++.... .
T Consensus 17 ~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~----E 92 (978)
T KOG1993|consen 17 VKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD----E 92 (978)
T ss_pred chhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc----c
Confidence 7999999999999999988766655 555556899999999999999999 46999999999987776443 3
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccC---CChhHHHHHHHHHHHHHhhhCCCCCCCCCCCHHH
Q 002082 122 PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI---HGVDTQFIGINFLESLVSEFSPSTSSAMGLPREF 198 (971)
Q Consensus 122 l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~---~~~~~~~igl~iL~~lv~Efs~~~ss~~gl~~~~ 198 (971)
....+.-+.+.++++|.+..+|- +|++.++++.+.++++ |+...+--.+..|..++-++++.+
T Consensus 93 ~~nQlaiQ~AvlisrIARlDyPr----eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~R---------- 158 (978)
T KOG1993|consen 93 ENNQLAIQNAVLISRIARLDYPR----EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKR---------- 158 (978)
T ss_pred chhHHHHHHHHHHHHHHhcCCCc----cchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhH----------
Confidence 45677888889999999887655 7999999999988865 234555667778888888887532
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 002082 199 HEQCRISLELDYLKTFYCWARDAA 222 (971)
Q Consensus 199 Hrk~~~~f~~~~L~~if~~~~~~L 222 (971)
=-++++.|.+. -+.||.+....+
T Consensus 159 L~a~rk~F~el-~~~I~~~l~~~l 181 (978)
T KOG1993|consen 159 LLADRKAFYEL-APEILTILAPIL 181 (978)
T ss_pred HhhhhHHHHHH-hHHHHHHHHHHH
Confidence 12567777543 566666443333
No 17
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=3.4 Score=49.89 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=113.7
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHHhhcCCChHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCC-----CCHHHHHHHH
Q 002082 36 EIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSF-----LTADEKKSLI 108 (971)
Q Consensus 36 E~~~~~ly~~~~-r~~Ae~~L~~f~~~~~~~~~c~~iLe~S-~~~y~~f~a~~~L~~~i~~~W~~-----l~~~~k~~lr 108 (971)
+...+.+-..++ |..||+.|.++.+.|.-.-.|-+|+..- -.+.++.-|+--+++.|+|.|.+ .++++|.+.|
T Consensus 7 qcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K 86 (970)
T COG5656 7 QCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAK 86 (970)
T ss_pred HHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHH
Confidence 333444444433 9999999999999999999999999766 56799999999999999999977 5567888999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHh
Q 002082 109 GFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (971)
Q Consensus 109 ~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~ 182 (971)
.|+.+-+......-+.-.|..+...+..|.--.|+.. -|. +++....++++ +...|...||..+.++-.
T Consensus 87 ~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~---~wg-l~p~~~nll~s-~ea~~vy~gLlcl~elfk 155 (970)
T COG5656 87 KYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSD---LWG-LFPKAANLLRS-SEANHVYTGLLCLEELFK 155 (970)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchh---hcc-cchHHHHhhcc-cchhHHHHHHHHHHHHHH
Confidence 9999888877644566677788888999999999853 466 88888999975 455677799988888754
No 18
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.30 E-value=0.29 Score=59.89 Aligned_cols=132 Identities=9% Similarity=0.097 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHhhcCCChHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHHHHHHHc
Q 002082 45 HVNPAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSF-----LTADEKKSLIGFCLCFVMQH 118 (971)
Q Consensus 45 ~~~r~~Ae~~L~~f~~~~~~~~~c~~iLe~S-~~~y~~f~a~~~L~~~i~~~W~~-----l~~~~k~~lr~~ll~yl~~~ 118 (971)
|+.++.||+-|+++...++-..+.+.|--.. .+--.+.-|+--+++.|.++|.. +.++++.-||.-+++.+.+.
T Consensus 18 p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii~s 97 (947)
T COG5657 18 PPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLIISS 97 (947)
T ss_pred CchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHHcc
Confidence 3348999999999999998766666666555 55578888899999999999954 77788889999999999875
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhC
Q 002082 119 ASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (971)
Q Consensus 119 ~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~Efs 185 (971)
. .+..-+...++++|+...+|| +|++.++++...+++ ++-....-.+..+.+++.++.
T Consensus 98 ~----n~l~iq~a~avs~IA~~DfPd----eWpTL~~DL~~~Ls~-~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 98 S----NQLQIQNALAVSRIARLDFPD----EWPTLVPDLLSLLSE-KDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred c----chHHHHHHHHHHHHHhccCcc----cchhHHHHHHhhhcc-cchHHHHHHHHHHHHHHHHHh
Confidence 5 333338899999999999988 599999999999974 443444444555555555544
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.19 E-value=15 Score=43.28 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhcCCChHHH----HHHHHhcCCchhHHHHHHHHHHHHHh-----------hccCCCCHHHHHHHHHHHH
Q 002082 48 PAAAEATILGLCQSPQPYKA----CQFILENSQVANARFQAAAAIRDAAM-----------REWSFLTADEKKSLIGFCL 112 (971)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~----c~~iLe~S~~~y~~f~a~~~L~~~i~-----------~~W~~l~~~~k~~lr~~ll 112 (971)
|..||+.|+++++.. -.+. .+-+-+.-+++|.++.|.-+|++.+. .+|-.++++-|+++|.-.+
T Consensus 22 rl~aE~ql~~l~~~d-F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al 100 (858)
T COG5215 22 RLRAEAQLLELQSGD-FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMAL 100 (858)
T ss_pred cccHHHHHHHhcccc-HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 899999999998643 2221 34444667899999999999998765 5799999999999998888
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHh
Q 002082 113 CFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAV 161 (971)
Q Consensus 113 ~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l 161 (971)
.-+. +.++-.-+...++++.|.+.+-+.. -|+.+..++....
T Consensus 101 ~aL~----s~epr~~~~Aaql~aaIA~~Elp~~---~wp~lm~~mv~nv 142 (858)
T COG5215 101 RALK----SPEPRFCTMAAQLLAAIARMELPNS---LWPGLMEEMVRNV 142 (858)
T ss_pred HHhc----CCccHHHHHHHHHHHHHHHhhCccc---cchHHHHHHHHhc
Confidence 7664 3455566778899999999988774 6877777666555
No 20
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.41 E-value=37 Score=42.45 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=96.2
Q ss_pred HHHhhCC-CC-HHHHHHHHHHhhcCCChHHH-HHHHHhcCCchhHHHHHHHHHHHHHhhccCCC----------CHHHHH
Q 002082 39 CSSIQMH-VN-PAAAEATILGLCQSPQPYKA-CQFILENSQVANARFQAAAAIRDAAMREWSFL----------TADEKK 105 (971)
Q Consensus 39 ~~~ly~~-~~-r~~Ae~~L~~f~~~~~~~~~-c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l----------~~~~k~ 105 (971)
......+ ++ |.+||..+.++-..++--.. |...+..-.+--.+=+|+-.|++++..+|... +.+.|.
T Consensus 10 L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~ 89 (1005)
T KOG2274|consen 10 LSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKA 89 (1005)
T ss_pred HHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHH
Confidence 3344444 33 99999999999877764333 55555553444555667789999999999653 345566
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHhhh
Q 002082 106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (971)
Q Consensus 106 ~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~Ef 184 (971)
-||+-+++-+. +-.+.+++...-.+..|..-.||| +|+..++-|.+++.+ ++.++.-=++..|.+++.|.
T Consensus 90 ~IRe~Ll~~l~----~sn~ki~~~vay~is~Ia~~D~Pd----~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 90 LIREQLLNLLD----DSNSKIRSAVAYAISSIAAVDYPD----EWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred HHHHHHHhhhh----ccccccchHHHHHHHHHHhccCch----hhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHH
Confidence 67777777655 456889999999999999999999 599999999999875 55554444555555554443
No 21
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=46.30 E-value=2.4e+02 Score=28.89 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=66.7
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCC
Q 002082 20 GGPADLAKLQSIMHSIEIACSSIQMHV-NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (971)
Q Consensus 20 ~~~md~~~l~~~~~~lE~~~~~ly~~~-~r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~ 98 (971)
.+..|++.+ .++.++..++..++ +..+|++.|.+.++.|.+++.-..++- .-.++..+--.+.-.|..
T Consensus 59 ~~~~nl~~l----~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l~-------~~l~~~~fa~lfgg~~~~ 127 (193)
T PF06738_consen 59 PRGVNLDKL----AAVNRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWLVILA-------AGLASAAFALLFGGSWID 127 (193)
T ss_pred CCCcCHHHH----HHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHHHHHHHHCCCHHH
Confidence 366788899 99999999998764 689999999999998866665444442 122222333334455655
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 002082 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVA 134 (971)
Q Consensus 99 l~~~~k~~lr~~ll~yl~~~~~~l~~~V~~~l~~~l 134 (971)
+-..--.++--+++....++- ...+++.+-+.-.+
T Consensus 128 ~~~a~i~g~~~~~~~~~~~r~-~~~~~~~~~~aa~~ 162 (193)
T PF06738_consen 128 MIVAFILGLLVGLLRQLLSRR-RLNSFIQEFIAAFL 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHH
Confidence 555555566666666666665 46666655544333
No 22
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=41.94 E-value=2.6e+02 Score=30.84 Aligned_cols=171 Identities=11% Similarity=0.056 Sum_probs=97.9
Q ss_pred HHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhHHHHHH
Q 002082 137 LMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYC 216 (971)
Q Consensus 137 i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~~f~~~~L~~if~ 216 (971)
-+++.|.+. +|.-+++-+..++.. .+++....||.+|..++....... ...|++.+|.++|.
T Consensus 107 ~~~~~~i~~---~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~--------------~~~L~~tGl~~v~~ 168 (282)
T PF10521_consen 107 QLDRPWISQ---HWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAE--------------WDILRRTGLFSVFE 168 (282)
T ss_pred cCCcchHHH---hhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhh--------------hHHHHHcChHHHHH
Confidence 566666662 577788888888874 468899999999999998765421 34566777877776
Q ss_pred HHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHhcccccccCCCCCcccccccccccccccCCCCCCcccccCCCcc
Q 002082 217 WARDAALSVTKQIIES-DAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPA 295 (971)
Q Consensus 217 ~~~~~L~~~~~~~~~~-~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 295 (971)
-++. .+.-. +|+ +...+...++..+..++..++.=.|.... .
T Consensus 169 ~al~---~~L~~-LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~---------------------------------~ 211 (282)
T PF10521_consen 169 DALF---PCLYY-LPPITPEDESLELLQAAYPALLSLLKTQENDDS---------------------------------N 211 (282)
T ss_pred HHHH---HHhhc-CCCCCCchhhHHHHHHHHHHHHHHHHhhccCCc---------------------------------c
Confidence 5533 22211 121 11123456777777777766543332111 0
Q ss_pred chHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHHHHHhhcccCccCCCChhhHHHHHHHHHHhhhhhcCC
Q 002082 296 WCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDP 375 (971)
Q Consensus 296 Wr~~l~~~~~l~llf~ly~~~r~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~ 375 (971)
.|....+..+-+.++.-+..... ...+.+....++-|..+...-|- .-.+|+.+++.-+.++|.+
T Consensus 212 ~r~~~l~~~l~e~IL~~~~~~~~-------~~~~~l~~~ll~~l~~~i~~lGi--------~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 212 PRSTWLDKILREGILSSMEHESS-------FSYPRLRTVLLQQLPPIIDELGI--------SSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred cchHHHHHHHHHHHhhhceeccc-------cCchhHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHhcC
Confidence 11122222222322222221111 00256666677777766655331 2367999999999999887
Q ss_pred hh
Q 002082 376 PD 377 (971)
Q Consensus 376 ~~ 377 (971)
|.
T Consensus 277 pf 278 (282)
T PF10521_consen 277 PF 278 (282)
T ss_pred CC
Confidence 64
No 23
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.25 E-value=8.8e+02 Score=30.46 Aligned_cols=153 Identities=12% Similarity=0.063 Sum_probs=82.5
Q ss_pred chhHHHHHHHHHHHHHhccccchhhHHcchHHHHHHHHhhccccccccCchhhHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 002082 715 EKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDL 794 (971)
Q Consensus 715 e~~v~~~t~~~LL~~L~~~~~~~~~l~~l~~~~~L~~~~~~~~~~~~l~~~~~r~l~~aL~~l~~~~~~~~~~~~~f~~~ 794 (971)
|-.|+..++ .|..+|++.-..--.-..-+..+.|++..++.. +-.+++.....+++-|+.+.. ..|..+
T Consensus 652 e~qVc~~aV-glVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~----~hR~vKP~IlS~FgDIAlaIg------~~F~~Y 720 (859)
T KOG1241|consen 652 EYQVCAAAV-GLVGDLARALEDDILPYCDELMTVLVQCLSSPN----LHRNVKPAILSVFGDIALAIG------ADFEPY 720 (859)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcc----ccccccchHHHHHHHHHHHHH------HhHHHH
Confidence 445655555 666666664321000111234555666654321 112334457788888876442 245555
Q ss_pred HHHHHHHHHHHhC----CCCcccccChhhHHHHHHHHHHHhhchhhccCcCcHHHHHHHHHhhhHHHHHHHHhhcCChHH
Q 002082 795 TRHATAYLVELSG----KNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAV 870 (971)
Q Consensus 795 l~pl~~~~~~l~~----~~~~~~~~~~~~v~~~v~~ll~~LrGi~~a~~~~s~~~lf~~l~~~l~~l~~l~~~y~~~p~V 870 (971)
+.-+-..+++..+ +.++...-=..+++. ++++.+.||+.|..+.+-.++ +.|+.+..+.++..-..+|++
T Consensus 721 l~~vm~llq~as~~~~d~~~~~~~dYvd~LRe---~~leay~gi~qglk~~~~~~~---~~p~v~~I~sfi~~I~~e~~~ 794 (859)
T KOG1241|consen 721 LEMVMPLLQQASSVQTDPADDSMVDYVDELRE---GILEAYTGIIQGLKTHADVML---VQPYVPHIISFIDRIAAEPDV 794 (859)
T ss_pred HHHHHHHHHHHHhccCCCCcccHHHHHHHHHH---HHHHHHHHHHHHhhcccchhh---hhcchHHHHHHHHHHhcCccc
Confidence 5555555555542 112222111233444 889999999999876533222 346667777777777777766
Q ss_pred H----HHHHHHHHHHHhc
Q 002082 871 V----YLLLKFVVDWVDG 884 (971)
Q Consensus 871 v----~~iLkf~~elv~n 884 (971)
. -.++-+..+++.-
T Consensus 795 ~~~~~~~a~GlIgDL~~~ 812 (859)
T KOG1241|consen 795 SEALHAAALGLIGDLATM 812 (859)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 3 4566666676654
No 24
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=38.05 E-value=3.9e+02 Score=29.80 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=48.4
Q ss_pred HHHHHhhcCC--ChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 002082 53 ATILGLCQSP--QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKI 130 (971)
Q Consensus 53 ~~L~~f~~~~--~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~yl~~~~~~l~~~V~~~l 130 (971)
+.+..+...+ .+|.....+|+++ +.|+...|+..|...+...=..- .....++-.++++++.+.......-+..-.
T Consensus 93 ~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~-~~~~~~~l~~ll~~L~~~l~~~~~~~~~~a 170 (312)
T PF03224_consen 93 ELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRS-EKLVKEALPKLLQWLSSQLSSSDSELQYIA 170 (312)
T ss_dssp HHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHH
T ss_pred HHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHHHHHHhhcCCCcchHHHH
Confidence 3455555433 3788777767655 99999999999999988753221 111136668888888875432233344555
Q ss_pred HHHHHHHHh
Q 002082 131 SSVAAQLMK 139 (971)
Q Consensus 131 ~~~la~i~K 139 (971)
+++++.++|
T Consensus 171 v~~L~~LL~ 179 (312)
T PF03224_consen 171 VQCLQNLLR 179 (312)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 666666664
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=34.34 E-value=2e+02 Score=34.34 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=62.4
Q ss_pred cCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhH
Q 002082 74 NSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAF 153 (971)
Q Consensus 74 ~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~ 153 (971)
+++|+|++-.|+++|-... +++-...+-..+.+.+. +-.+|||.+.+.++.++.|.. ++.. +.. +
T Consensus 89 ~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~----~~~~~VRk~A~~~l~~i~~~~-p~~~--~~~-~ 153 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLS----DPSPYVRKKAALALLKIYRKD-PDLV--EDE-L 153 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHH----SSSHHHHHHHHHHHHHHHHHC-HCCH--HGG-H
T ss_pred cCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhc----CCchHHHHHHHHHHHHHhccC-HHHH--HHH-H
Confidence 3678999999999988865 34444455555555544 345699999999999999983 2321 122 7
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHH
Q 002082 154 FSQVHQAVLGIHGVDTQFIGINFLESL 180 (971)
Q Consensus 154 ~~~i~~~l~~~~~~~~~~igl~iL~~l 180 (971)
++.+.+++.. .++.-..-++.++.++
T Consensus 154 ~~~l~~lL~d-~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 154 IPKLKQLLSD-KDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHTTH-SSHHHHHHHHHHHHHH
T ss_pred HHHHhhhccC-CcchhHHHHHHHHHHH
Confidence 8889999864 4556666677777766
No 26
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=34.20 E-value=21 Score=17.25 Aligned_cols=6 Identities=50% Similarity=0.762 Sum_probs=3.9
Q ss_pred CCCCCC
Q 002082 11 GGGDDG 16 (971)
Q Consensus 11 ~~~~~~ 16 (971)
||||+|
T Consensus 3 gG~Wgq 8 (8)
T PF03991_consen 3 GGGWGQ 8 (8)
T ss_pred CCcCCC
Confidence 677754
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=33.94 E-value=1.9e+02 Score=26.10 Aligned_cols=107 Identities=14% Similarity=-0.019 Sum_probs=59.6
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHH-----HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 002082 64 PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKS-----LIGFCLCFVMQHASSPEGYVQAKISSVAAQLM 138 (971)
Q Consensus 64 ~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~-----lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~ 138 (971)
..+....+|.+. +++++..|+.+|...... +++.+.. +-..+++++. +-.+-|+...+.++..|.
T Consensus 8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~----~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSS-DENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLK----SEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHh----CCCHHHHHHHHHHHHHHc
Confidence 444455566544 478888898888887655 1333333 3334455443 235678888888888887
Q ss_pred hhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 002082 139 KRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (971)
Q Consensus 139 K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv 181 (971)
..+......-....+++.+.+.+.. .+......++.+|..+.
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence 5443110000112245566666653 34555666666666554
No 28
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.04 E-value=1.6e+02 Score=28.69 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=52.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHhhcCCChHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHH---
Q 002082 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL--- 107 (971)
Q Consensus 34 ~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~iLe---~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~l--- 107 (971)
-+|+|+......+|-...-++....+.++.....+-..|. .+.+|.++++|+.+|...+.+.- ..-+.++
T Consensus 9 li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg----~~f~~ev~~~ 84 (140)
T PF00790_consen 9 LIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCG----PRFHREVASK 84 (140)
T ss_dssp HHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH----HHHHHHHTSH
T ss_pred HHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHhHH
Confidence 3566665544444444444444444555444444333331 24899999999999999999853 3333332
Q ss_pred --HHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 002082 108 --IGFCLCFVMQHASSPEGYVQAKISSVAA 135 (971)
Q Consensus 108 --r~~ll~yl~~~~~~l~~~V~~~l~~~la 135 (971)
-+.+...+........+.|++++..++.
T Consensus 85 ~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 85 EFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 3333344444432112238888776654
No 29
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.94 E-value=1.6e+02 Score=26.43 Aligned_cols=68 Identities=22% Similarity=0.164 Sum_probs=35.8
Q ss_pred CCCChHhHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHhhcCC-ChHHH---HHHHH-hcCCchhHHHHHHHHH
Q 002082 21 GPADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQSP-QPYKA---CQFIL-ENSQVANARFQAAAAI 88 (971)
Q Consensus 21 ~~md~~~l~~~~~~lE~~~~~ly~~~~-r~~Ae~~L~~f~~~~-~~~~~---c~~iL-e~S~~~y~~f~a~~~L 88 (971)
-+|+.+.+...++-|+.+.+.--.|.| |+.|++....+++-. .+--. .-.|| |-|+.|..-++|=+.+
T Consensus 8 ~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~i 81 (93)
T COG1698 8 MNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLI 81 (93)
T ss_pred hhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 345555554333333333332223445 899999998888632 22222 33455 3456666666665443
No 30
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=29.18 E-value=1.6e+02 Score=32.13 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=66.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHhcccc---cc-CcchhHHHHHHHHHHHHHHHhcccCcccc--------cccc
Q 002082 855 NPVLLLLEVYKHESAVVYLLLKFVVDWVDGQIS---YL-EVQETNIVIDFCTRLLQLYSSHNIGKMLM--------TQSS 922 (971)
Q Consensus 855 ~~l~~l~~~y~~~p~Vv~~iLkf~~elv~n~~~---~l-~s~~g~~Lf~~~~~li~~Y~~~~~~~~~~--------~~~~ 922 (971)
..++.++..|.+++.++..++|+++.++..-.. .. +..++..-|.+..+.++.|....+..... +.=.
T Consensus 44 ~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~ 123 (266)
T PF04821_consen 44 KDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLE 123 (266)
T ss_pred hhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 356667788999999999999999999975333 12 26677778888888888887665521110 0000
Q ss_pred ccccchhhhhhhhHHHHHHHHHHhhcC
Q 002082 923 CLLGEAKTEKYKDLRALFQLLSNLCSK 949 (971)
Q Consensus 923 ~~~~~~~~e~yk~l~~~l~iL~~~lsg 949 (971)
..+.+..++...-|.++|.+++|++.=
T Consensus 124 ~~~~~rt~~d~~ii~lvL~LiRNlL~I 150 (266)
T PF04821_consen 124 KDWEDRTERDNLIIELVLTLIRNLLAI 150 (266)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 113455677788899999999999984
No 31
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=28.71 E-value=2.3e+02 Score=24.34 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=50.9
Q ss_pred HHHHHHHhhCCCC---HHHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 002082 35 IEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFC 111 (971)
Q Consensus 35 lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~l 111 (971)
++.+.+.+...++ |..|=+.|.+++ ++...+.....| ++.++.++..|+.+|... +. .+....|
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i--------~~---~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI--------GD---PEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC--------HH---HHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh--------CC---HHHHHHH
Confidence 3556666745544 666777776554 355666666677 678899999999888754 11 2234444
Q ss_pred HHHHHHcCCCChhHHHHHHHHHH
Q 002082 112 LCFVMQHASSPEGYVQAKISSVA 134 (971)
Q Consensus 112 l~yl~~~~~~l~~~V~~~l~~~l 134 (971)
.+.+.. +-...|+...+..+
T Consensus 68 ~~~l~~---~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 68 IKLLQD---DDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHTC----SSHHHHHHHHHHH
T ss_pred HHHHcC---CCcHHHHHHHHhhc
Confidence 443322 23566677666655
No 32
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=27.63 E-value=5.1e+02 Score=24.90 Aligned_cols=60 Identities=10% Similarity=-0.067 Sum_probs=37.8
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHH
Q 002082 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHAS--SPEGYVQAKISSVAAQ 136 (971)
Q Consensus 75 S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~yl~~~~~--~l~~~V~~~l~~~la~ 136 (971)
+.|+.++..|+.+|+..+.+.-..+- ....=+.|+.+.+--..+ ..+.-|+.++..++..
T Consensus 48 ~~n~~vql~AL~lLd~~vkNcg~~f~--~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~ 109 (133)
T cd03561 48 YGNPHVQLLALTLLELLVKNCGKPFH--LQVADKEFLLELVKIAKNSPKYDPKVREKALELILA 109 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHhCChHHH--HHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998643321 112225666663222221 3567788887776543
No 33
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=27.32 E-value=1.2e+02 Score=31.49 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHhcc-ccccC-cchhHHHHHHHHHHHHH
Q 002082 854 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQ-ISYLE-VQETNIVIDFCTRLLQL 907 (971)
Q Consensus 854 l~~l~~l~~~y~~~p~Vv~~iLkf~~elv~n~-~~~l~-s~~g~~Lf~~~~~li~~ 907 (971)
+..++.+++.+..+.-|+.|+|+++.-+..+. ...+. .+++ ..++.+..+++.
T Consensus 129 ~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~~~~~~~~~~~~~-~~~~~L~~~~~~ 183 (193)
T PF12612_consen 129 LSDLLSILKENLRNDRVVVPLLKTLDFLLSSGVFDSLPEDSDS-PFLRKLFDLVQK 183 (193)
T ss_pred HHHHHHHHHHhCCCCCeeecHHHHHHHHHhCcchhcccccccc-hHHHHHHHHHHH
Confidence 67777888888889999999999999999984 33444 3333 455555555543
No 34
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=25.82 E-value=5.4e+02 Score=23.83 Aligned_cols=58 Identities=7% Similarity=0.044 Sum_probs=37.7
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHH--HHHHHHHH-----HcCCCChhHHHHHHHHHHHH
Q 002082 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLI--GFCLCFVM-----QHASSPEGYVQAKISSVAAQ 136 (971)
Q Consensus 75 S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr--~~ll~yl~-----~~~~~l~~~V~~~l~~~la~ 136 (971)
++++-+.+.|+.+|+..+.+. +..-..+++ .|+.+.+- ..+.+....|++++..++..
T Consensus 48 ~~~~~~~lkaL~lLe~lvkN~----g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 48 NKNPHVVLKALTLLEYCVKNC----GERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred CCcHHHHHHHHHHHHHHHHHc----cHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 358999999999999999885 344444443 35544432 12334578888888777643
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=25.34 E-value=1.3e+03 Score=29.41 Aligned_cols=92 Identities=10% Similarity=0.098 Sum_probs=61.0
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHH
Q 002082 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFF 154 (971)
Q Consensus 75 S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~ 154 (971)
+.||+++=.|+.+|-..-. .++-.++...+.+.-.+..+|||.+.+.++++|.+..= +. -+...++
T Consensus 116 d~Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-el--v~~~~~~ 181 (746)
T PTZ00429 116 NSSPVVRALAVRTMMCIRV-----------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QL--FYQQDFK 181 (746)
T ss_pred CCCHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-cc--ccccchH
Confidence 3567777777766554322 14666777777777667889999999999999977431 11 0122477
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHH
Q 002082 155 SQVHQAVLGIHGVDTQFIGINFLESLV 181 (971)
Q Consensus 155 ~~i~~~l~~~~~~~~~~igl~iL~~lv 181 (971)
+++.+++.. .++.-..-++..|.++.
T Consensus 182 ~~L~~LL~D-~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 182 KDLVELLND-NNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHHHHHhcC-CCccHHHHHHHHHHHHH
Confidence 888888863 45555566666677664
No 36
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.76 E-value=1.2e+03 Score=27.35 Aligned_cols=177 Identities=18% Similarity=0.199 Sum_probs=96.9
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHhhcCCChHHHHHHH--HhcC--------CchhHHHHHHHH
Q 002082 19 GGGPADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFI--LENS--------QVANARFQAAAA 87 (971)
Q Consensus 19 ~~~~md~~~l~~~~~~lE~~~~~ly~~~~-r~~Ae~~L~~f~~~~~~~~~c~~i--Le~S--------~~~y~~f~a~~~ 87 (971)
|.-.||.++. ..++..|+++|..++ ...|-..|..=-++|+-|...+.| ||.. .+.-.+|-=+.-
T Consensus 17 Tdp~~~eedw----~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNE 92 (594)
T KOG1086|consen 17 TDPSNDEEDW----KAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNE 92 (594)
T ss_pred cCccchHHHH----HHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4456888888 889999999997654 556666665555788888775533 2211 234455555555
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCC--------------chhhH
Q 002082 88 IRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS--------------DKEAF 153 (971)
Q Consensus 88 L~~~i~~~W~~l~~~~k~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~--------------~~~~~ 153 (971)
|.+.|.-++ ++.-.-.-+|+-+++.+..-.-.++. .-|+-.++-.+-|+|-...++. .+..+
T Consensus 93 LIkvvsPKY--lG~~tSekvKtkiIelLfsWtv~lpe--~~KikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssv 168 (594)
T KOG1086|consen 93 LIKVVSPKY--LGSRTSEKVKTKIIELLFSWTVSLPE--EPKIKDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSV 168 (594)
T ss_pred HHHHhCchh--cchhhhHHHHHHHHHHHhhheecCcc--cchHHHHHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccc
Confidence 555555443 22222223344444433332211211 1134445555666676654431 23344
Q ss_pred HHH------HHHHhccCCChhHHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhHHHHHHH
Q 002082 154 FSQ------VHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCW 217 (971)
Q Consensus 154 ~~~------i~~~l~~~~~~~~~~igl~iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~~f~~~~L~~if~~ 217 (971)
|++ +..++++ ..++--.-+-+++.++|.|= .|+--|.+=|-+.|..+-..
T Consensus 169 FddEEksklL~rLLkS-n~PeDLqaANkLIK~lVkee-------------e~k~eKiskR~~aleev~n~ 224 (594)
T KOG1086|consen 169 FDDEEKSKLLARLLKS-NHPEDLQAANKLIKTLVKEE-------------EHKLEKISKRVKALEEVNNN 224 (594)
T ss_pred cCcHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 442 2345554 45666667778888888763 35555555555555555443
No 37
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=21.54 E-value=7.7e+02 Score=24.11 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=37.7
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcC-----CCChhHHHHHHHHHH
Q 002082 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHA-----SSPEGYVQAKISSVA 134 (971)
Q Consensus 75 S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~yl~~~~-----~~l~~~V~~~l~~~l 134 (971)
+.|+.++++|+++|+..+.+.-..+ .....=+.|+-+.+---. +..+.-|+++++.++
T Consensus 49 ~~n~~v~l~AL~LLe~~vkNCG~~f--h~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li 111 (139)
T cd03567 49 SPQEKEALQALTVLEACMKNCGERF--HSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELL 111 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCHHH--HHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 7889999999999999999874332 122233556655333221 235678888876554
No 38
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.46 E-value=2.6e+02 Score=26.45 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=25.1
Q ss_pred ccccccCCCCCCCCCCCCCCChHhHHHHHHHHHHHHHHhhC
Q 002082 4 MQEYSNGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQM 44 (971)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~md~~~l~~~~~~lE~~~~~ly~ 44 (971)
+++-|+|||+ ||.++.+.-.-++.|.+|++.+...+-.
T Consensus 10 ~~~~s~~g~~---~~~~~~~~~~k~~~tq~QvdeVv~IMr~ 47 (116)
T KOG0860|consen 10 NEEDSSGGGD---GPPPNNTANDKLQQTQAQVDEVVDIMRE 47 (116)
T ss_pred CcccccCCCC---CCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 4443555455778888999999988755
No 39
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=20.32 E-value=7.4e+02 Score=24.20 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=36.6
Q ss_pred hcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHcC---CCChhHHHHHHHHHH
Q 002082 73 ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHA---SSPEGYVQAKISSVA 134 (971)
Q Consensus 73 e~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~yl~~~~---~~l~~~V~~~l~~~l 134 (971)
.++.++.++.+|+++|+..+.+.-..+= +-..=|.|+-+.+...- .+.+.-|++++..++
T Consensus 48 ~~~~n~~v~l~aL~LLe~~vkNCG~~fh--~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li 110 (141)
T cd03565 48 NGNKNHKEVMLTLTVLETCVKNCGHRFH--VLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALI 110 (141)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHccHHHH--HHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHH
Confidence 4467899999999999999999754331 11133456555232221 124556777765554
Done!