BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002083
(969 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
Length = 618
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/581 (25%), Positives = 281/581 (48%), Gaps = 35/581 (6%)
Query: 15 DLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFG 74
+L+++I AR++AEE ++ E ++ E D R + +L+Y+ MLG+ A FG
Sbjct: 14 ELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRN--VAKLLYMHMLGYPAHFG 71
Query: 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAV 134
+ +K+ KR GYL L L+E D+ +L+ N I+ DL + AL +
Sbjct: 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTL 131
Query: 135 CKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDN 194
+ + E + +V +LL S +R+KA + +K P ++ + + L +
Sbjct: 132 GCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK 191
Query: 195 DPGVMGATLCPLFDLITVD---VNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQ 251
+ GV+ ++ L ++ + ++ LV V ILK + +D + PF+Q
Sbjct: 192 NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251
Query: 252 IRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLI 311
+R+L++L +LG D +SE M ++ + ++S N+GNA+LYE + + I + L
Sbjct: 252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 311
Query: 312 ESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTF 371
A +++ RFL ++ N++Y+ + +L + ++T ++H+ ++DCL+D D ++KR+
Sbjct: 312 VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAM 371
Query: 372 ELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKV 431
EL + + +N+ ++ ++ Y + + +K + AS AE++APS W I T+ +V
Sbjct: 372 ELSFALVNGNNIRGMMKELL-YFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV 430
Query: 432 FEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVI 491
AG V NL++LI ++ + V+ + I +QV
Sbjct: 431 LTTAGSYVRDDAVPNLIQLITNSV---------EMHAYTVQRLYKAILGDYSQQPLVQVA 481
Query: 492 CWVLGEYGTADGKVSA--------SYITGKLCDVAEAY--SNDET--IKAYAITALMKIY 539
W +GEYG D VS ++ D+ E+ SN T + YA+TA+MK+
Sbjct: 482 AWCIGEYG--DLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKL- 538
Query: 540 AFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAV 580
+ R + + ++ +S +LQQRA E A+
Sbjct: 539 -----STRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNAL 574
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|L Chain L, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|A Chain A, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|L Chain L, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 623
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 142/586 (24%), Positives = 272/586 (46%), Gaps = 44/586 (7%)
Query: 16 LVKSIGEARSKAEEDRIVLNEIETLKRRI-SEPDIPKRKMKEYIIRLVYVEMLGHDASFG 74
+ I +SK E + + E+ ++ + + + K+Y+ +L+++ +LGHD FG
Sbjct: 16 FISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFG 75
Query: 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAV 134
++ AV + + K+ GYL +++ +N + +LI LI N I+ DL S N + AL+ +
Sbjct: 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCI 135
Query: 135 CKLINEETIPAVLPQVVELL--GHSKEAVRRKAIMALHRFYQKSPSSVQH--LVSNFRKR 190
+ + E A ++ ++L G + ++V++ A + L R Y+ SP V S
Sbjct: 136 ANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHL 195
Query: 191 LCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLP--KSYDYHQMPAP 248
L D GV+ A + L + +K V VS L ++ + Y Y+ +PAP
Sbjct: 196 LNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP 255
Query: 249 FIQIRLLKILALLGSGDKQASENMYT-VVGDIFRKCD--------SSSNIGNAVLYECIC 299
++ ++LL++L + A T + I K SN NAVL+E I
Sbjct: 256 WLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS 315
Query: 300 CVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKT--SPEIAEQHQLAVID 357
+ + P L+ A + + +FL+ NL+Y+ ++++ L + S E + H VI+
Sbjct: 316 LIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVIN 375
Query: 358 CLE-DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQ 416
L+ + D +++++ +LLY M SN + IV M+ Y+ D + EI + LAE+
Sbjct: 376 ALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYL-ETADYSIREEIVLKVAILAEK 434
Query: 417 FAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLR 476
+A W++ T+ + AGD V+ +V + +++++ DD ++ A ++
Sbjct: 435 YAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIV---INRDD------VQGYAAKTVFE 485
Query: 477 IIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALM 536
+ P ++V ++LGE+G ++ + L +S L+
Sbjct: 486 ALQAPACHENLVKVGGYILGEFGNL---IAGDPRSSPLIQFNLLHSKFHLCSVPTRALLL 542
Query: 537 KIYAFEIAAGRKVDMLPECQSLIEELSASHS------TDLQQRAYE 576
Y + V++ PE ++ I+++ S S +LQQRA E
Sbjct: 543 STYI------KFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVE 582
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core
pdb|2XA7|A Chain A, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 621
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 142/586 (24%), Positives = 272/586 (46%), Gaps = 44/586 (7%)
Query: 16 LVKSIGEARSKAEEDRIVLNEIETLKRRI-SEPDIPKRKMKEYIIRLVYVEMLGHDASFG 74
+ I +SK E + + E+ ++ + + + K+Y+ +L+++ +LGHD FG
Sbjct: 16 FISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFG 75
Query: 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAV 134
++ AV + + K+ GYL +++ +N + +LI LI N I+ DL S N + AL+ +
Sbjct: 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCI 135
Query: 135 CKLINEETIPAVLPQVVELL--GHSKEAVRRKAIMALHRFYQKSPSSVQH--LVSNFRKR 190
+ + E A ++ ++L G + ++V++ A + L R Y+ SP V S
Sbjct: 136 ANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHL 195
Query: 191 LCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLP--KSYDYHQMPAP 248
L D GV+ A + L + +K V VS L ++ + Y Y+ +PAP
Sbjct: 196 LNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP 255
Query: 249 FIQIRLLKILALLGSGDKQASENMYT-VVGDIFRKCD--------SSSNIGNAVLYECIC 299
++ ++LL++L + A T + I K SN NAVL+E I
Sbjct: 256 WLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS 315
Query: 300 CVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKT--SPEIAEQHQLAVID 357
+ + P L+ A + + +FL+ NL+Y+ ++++ L + S E + H VI+
Sbjct: 316 LIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVIN 375
Query: 358 CLE-DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQ 416
L+ + D +++++ +LLY M SN + IV M+ Y+ D + EI + LAE+
Sbjct: 376 ALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYL-ETADYSIREEIVLKVAILAEK 434
Query: 417 FAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLR 476
+A W++ T+ + AGD V+ +V + +++++ DD ++ A ++
Sbjct: 435 YAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIV---INRDD------VQGYAAKTVFE 485
Query: 477 IIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALM 536
+ P ++V ++LGE+G ++ + L +S L+
Sbjct: 486 ALQAPACHENLVKVGGYILGEFGNL---IAGDPRSSPLIQFNLLHSKFHLCSVPTRALLL 542
Query: 537 KIYAFEIAAGRKVDMLPECQSLIEELSASHS------TDLQQRAYE 576
Y + V++ PE ++ I+++ S S +LQQRA E
Sbjct: 543 STYI------KFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVE 582
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Query: 51 KRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIIL 110
K K KE + +++ +G D S + V DNL LK+ YL + + D+ I+
Sbjct: 27 KEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIM 86
Query: 111 IVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALH 170
VN+ KD + N LI A+ + + ++ + + + L VR+ A + +
Sbjct: 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 146
Query: 171 RFYQKSPSSV--QHLVSNFRKRLCDNDPGVMGATLCPLFDL 209
+ + + V Q + + R + D++P V+ + L ++
Sbjct: 147 KLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEI 187
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Query: 51 KRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIIL 110
K K KE + +++ +G D S + V DNL LK+ YL + + D+ I+
Sbjct: 27 KEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIM 86
Query: 111 IVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALH 170
VN+ KD + N LI A+ + + ++ + + + L VR+ A + +
Sbjct: 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 146
Query: 171 RFYQKSPSSV--QHLVSNFRKRLCDNDPGVMGATLCPLFDL 209
+ + + V Q + + R + D++P V+ + L ++
Sbjct: 147 KLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEI 187
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 67 LGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLI 126
+G D S + V DNL LK+ YL + + D+ I+ VNT KD + N LI
Sbjct: 43 VGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNPLI 102
Query: 127 VCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV--QHLV 184
A+ + + ++ + + + L VR+ A + + + + + V Q +
Sbjct: 103 RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFL 162
Query: 185 SNFRKRLCDNDPGVMG 200
+ + D++P V+
Sbjct: 163 DTLKDLISDSNPMVVA 178
>pdb|3B2A|A Chain A, Crystal Structure Of The Archaeal Heat-Like Repeats
Protein Ton_1937 From Thermococcus Onnurineus Na1
pdb|3B2A|B Chain B, Crystal Structure Of The Archaeal Heat-Like Repeats
Protein Ton_1937 From Thermococcus Onnurineus Na1
Length = 265
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 254 LLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIES 313
L IL L G D+ + +G+I ++ DS + ++E
Sbjct: 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRM-------------------MVLER 75
Query: 314 AADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLA---VIDCLEDPDDTLKRKT 370
DV L ++ + + ALG L+K P ++ A ++ LE PDD ++ +T
Sbjct: 76 HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIET 135
Query: 371 FELLYKM 377
++L K+
Sbjct: 136 IDVLSKL 142
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 118 DLKSDNYLIVC--AALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMAL 169
D SD L C AAL+ + + +E +P +LP + ELL H + V+ I+ L
Sbjct: 330 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 383
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 118 DLKSDNYLIVC--AALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMAL 169
D SD L C AAL+ + + +E +P +LP + ELL H + V+ I+ L
Sbjct: 343 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 396
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 129 AALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMAL 169
AAL+ + + +E +P +LP + ELL H + V+ I+ L
Sbjct: 381 AALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 421
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 129 AALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMAL 169
AAL+ + + +E +P +LP + ELL H + V+ I+ L
Sbjct: 381 AALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 421
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|E Chain E, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 355
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 42 RRISEPDIPKRKMKEYIIRLVYV----EMLGH-DASFGYIHAVKMTHDDNLVLKRTGYLA 96
R +E I RK + +++Y+ E LG +A+ + K+ ++ L+R YL
Sbjct: 32 RVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLT 91
Query: 97 VTLFLNEDHDLIILIVNTIQKDL--KSDNYLIVCAALNAVCKLINEETIPAV 146
+ D+II + +++ KD+ K D+Y A+ A+C++ + + A+
Sbjct: 92 IKEMSCIAEDVII-VTSSLTKDMTGKEDSYR--GPAVRALCQITDSTMLQAI 140
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 465 QLRSSAVESYLRIIGEPK---LPSVFL--QVICWVLGEYGTADGKVSASYITGKLCDVAE 519
+L V + +I+G K P VF Q++ W++ EY D S +ITGK +
Sbjct: 132 RLSRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGG 191
Query: 520 AYSNDETIKAYAITALMKIYAFEIAAGRKVDM 551
++ E+ A +T +K E A R +D+
Sbjct: 192 SHGR-ESATAKGVTICIK----EAAKKRGIDI 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,744,109
Number of Sequences: 62578
Number of extensions: 1015629
Number of successful extensions: 2632
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2605
Number of HSP's gapped (non-prelim): 21
length of query: 969
length of database: 14,973,337
effective HSP length: 108
effective length of query: 861
effective length of database: 8,214,913
effective search space: 7073040093
effective search space used: 7073040093
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)