Query 002083
Match_columns 969
No_of_seqs 326 out of 1436
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 16:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1062 Vesicle coat complex A 100.0 5E-133 1E-137 1153.1 63.6 848 5-954 2-866 (866)
2 KOG1077 Vesicle coat complex A 100.0 3.1E-90 6.7E-95 783.7 57.1 556 11-584 11-588 (938)
3 KOG1059 Vesicle coat complex A 100.0 5.4E-86 1.2E-90 752.6 40.6 586 7-632 10-623 (877)
4 PTZ00429 beta-adaptin; Provisi 100.0 3.7E-75 8.1E-80 702.4 59.9 513 34-591 31-556 (746)
5 PF01602 Adaptin_N: Adaptin N 100.0 1.3E-75 2.8E-80 692.4 48.5 517 29-583 1-524 (526)
6 KOG1060 Vesicle coat complex A 100.0 4.1E-64 8.9E-69 577.4 41.7 555 38-634 38-626 (968)
7 KOG1061 Vesicle coat complex A 100.0 6.4E-58 1.4E-62 532.6 40.3 548 34-631 12-576 (734)
8 COG5096 Vesicle coat complex, 100.0 5E-44 1.1E-48 424.2 42.7 521 36-583 19-562 (757)
9 KOG1058 Vesicle coat complex C 100.0 2.8E-41 6E-46 387.7 33.7 428 38-501 23-464 (948)
10 KOG1078 Vesicle coat complex C 100.0 3.3E-38 7.1E-43 365.5 39.1 502 37-584 24-533 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 2.7E-35 5.8E-40 330.0 40.2 506 37-584 24-556 (898)
12 PF01602 Adaptin_N: Adaptin N 99.3 7.8E-10 1.7E-14 131.7 30.7 385 82-500 88-503 (526)
13 KOG1062 Vesicle coat complex A 99.1 2.4E-07 5.2E-12 110.6 37.9 413 139-585 101-544 (866)
14 PTZ00429 beta-adaptin; Provisi 99.0 3.2E-06 7E-11 104.5 39.2 387 43-479 76-507 (746)
15 PLN03200 cellulose synthase-in 98.9 2.6E-05 5.7E-10 103.6 46.3 494 77-581 103-721 (2102)
16 PLN03200 cellulose synthase-in 98.8 1.1E-05 2.3E-10 107.1 37.1 436 112-584 364-861 (2102)
17 KOG1059 Vesicle coat complex A 98.8 5.1E-05 1.1E-09 90.2 37.9 389 10-433 20-460 (877)
18 PRK09687 putative lyase; Provi 98.7 1.9E-06 4.1E-11 95.5 24.4 96 110-210 23-119 (280)
19 PRK09687 putative lyase; Provi 98.7 4.6E-06 1E-10 92.5 24.6 248 78-375 28-278 (280)
20 PRK13800 putative oxidoreducta 98.6 1.5E-05 3.3E-10 101.6 27.8 268 111-442 622-889 (897)
21 PRK13800 putative oxidoreducta 98.5 1.8E-05 4E-10 100.9 27.8 227 125-414 609-835 (897)
22 PF12717 Cnd1: non-SMC mitotic 98.5 2.6E-06 5.7E-11 88.1 16.5 106 123-228 1-110 (178)
23 KOG2171 Karyopherin (importin) 98.5 0.0021 4.6E-08 80.6 44.1 398 128-583 101-549 (1075)
24 KOG2171 Karyopherin (importin) 98.5 0.0024 5.1E-08 80.3 43.4 316 105-436 117-529 (1075)
25 PF10508 Proteasom_PSMB: Prote 98.5 0.00023 5E-09 85.4 34.1 257 108-377 75-364 (503)
26 PF10508 Proteasom_PSMB: Prote 98.5 0.001 2.3E-08 79.8 38.3 324 75-411 79-461 (503)
27 PF14764 SPG48: AP-5 complex s 98.4 0.00021 4.5E-09 83.0 30.5 137 252-392 8-154 (459)
28 KOG2023 Nuclear transport rece 98.4 0.0017 3.8E-08 77.0 36.8 403 33-446 272-765 (885)
29 KOG1058 Vesicle coat complex C 98.3 7.5E-05 1.6E-09 89.1 23.7 257 146-430 100-359 (948)
30 KOG1020 Sister chromatid cohes 98.3 0.005 1.1E-07 78.9 40.6 113 118-231 824-940 (1692)
31 KOG1060 Vesicle coat complex A 98.3 0.0026 5.6E-08 76.9 35.1 273 119-416 44-351 (968)
32 KOG0212 Uncharacterized conser 98.3 0.0025 5.3E-08 74.7 33.1 296 103-419 35-369 (675)
33 KOG0213 Splicing factor 3b, su 98.2 0.0034 7.3E-08 75.3 33.7 235 9-264 607-913 (1172)
34 KOG1824 TATA-binding protein-i 98.2 0.0039 8.4E-08 76.6 33.6 287 72-380 770-1096(1233)
35 KOG2023 Nuclear transport rece 98.2 0.0015 3.3E-08 77.5 29.2 345 128-501 376-776 (885)
36 COG5240 SEC21 Vesicle coat com 98.1 0.00047 1E-08 80.4 22.7 286 92-408 246-548 (898)
37 KOG0213 Splicing factor 3b, su 98.0 0.015 3.3E-07 69.9 34.0 114 84-199 452-570 (1172)
38 KOG0212 Uncharacterized conser 98.0 0.037 7.9E-07 65.3 35.4 321 56-395 62-425 (675)
39 KOG1078 Vesicle coat complex C 97.9 0.0023 5E-08 77.4 24.4 282 98-405 233-522 (865)
40 KOG1824 TATA-binding protein-i 97.9 0.004 8.6E-08 76.5 26.4 339 37-410 695-1067(1233)
41 COG5096 Vesicle coat complex, 97.9 0.0065 1.4E-07 74.8 28.4 271 110-392 55-340 (757)
42 KOG0166 Karyopherin (importin) 97.8 0.043 9.3E-07 65.1 32.8 296 75-396 68-405 (514)
43 PF05804 KAP: Kinesin-associat 97.6 0.057 1.2E-06 67.0 31.8 367 184-582 252-648 (708)
44 PF05804 KAP: Kinesin-associat 97.6 0.16 3.5E-06 63.1 34.0 274 121-452 301-607 (708)
45 PF12348 CLASP_N: CLASP N term 97.5 0.0011 2.5E-08 70.6 13.6 180 35-214 3-209 (228)
46 KOG1020 Sister chromatid cohes 97.4 0.86 1.9E-05 59.6 40.2 278 10-304 751-1064(1692)
47 KOG2259 Uncharacterized conser 97.4 0.25 5.5E-06 59.5 31.4 323 103-432 151-525 (823)
48 PF13646 HEAT_2: HEAT repeats; 97.4 0.00094 2E-08 60.0 9.2 84 113-206 2-87 (88)
49 KOG0166 Karyopherin (importin) 97.3 0.026 5.6E-07 66.9 22.3 248 77-344 156-438 (514)
50 KOG1241 Karyopherin (importin) 97.3 0.28 6E-06 60.0 30.4 160 56-215 236-439 (859)
51 COG5181 HSH155 U2 snRNP splice 97.3 0.13 2.9E-06 61.2 26.8 252 310-584 601-871 (975)
52 PF12717 Cnd1: non-SMC mitotic 97.1 0.023 5E-07 58.9 16.5 92 158-263 1-92 (178)
53 cd00256 VATPase_H VATPase_H, r 97.0 0.28 6.1E-06 57.7 26.7 273 246-541 113-426 (429)
54 COG5215 KAP95 Karyopherin (imp 97.0 0.7 1.5E-05 55.0 29.2 203 291-500 192-437 (858)
55 PF05918 API5: Apoptosis inhib 97.0 0.35 7.5E-06 58.5 27.6 80 147-231 25-104 (556)
56 KOG1061 Vesicle coat complex A 97.0 0.52 1.1E-05 57.9 29.0 347 57-430 64-430 (734)
57 PF11864 DUF3384: Domain of un 97.0 1.4 2.9E-05 52.8 35.6 258 307-578 170-461 (464)
58 KOG1943 Beta-tubulin folding c 96.9 2.2 4.8E-05 54.4 34.9 139 75-214 343-503 (1133)
59 COG1413 FOG: HEAT repeat [Ener 96.9 0.11 2.3E-06 58.8 21.2 107 77-198 47-153 (335)
60 PF04826 Arm_2: Armadillo-like 96.8 0.11 2.4E-06 57.1 19.7 129 121-264 24-164 (254)
61 KOG0414 Chromosome condensatio 96.8 0.022 4.7E-07 71.9 15.7 91 120-210 933-1026(1251)
62 cd00020 ARM Armadillo/beta-cat 96.6 0.0087 1.9E-07 56.1 8.7 99 112-210 9-119 (120)
63 KOG1242 Protein containing ada 96.6 1.1 2.5E-05 53.9 27.8 310 53-416 111-445 (569)
64 KOG1077 Vesicle coat complex A 96.6 0.39 8.4E-06 58.3 23.6 274 99-394 318-604 (938)
65 KOG2025 Chromosome condensatio 96.5 2.3 5.1E-05 52.0 28.7 98 72-170 84-189 (892)
66 KOG0168 Putative ubiquitin fus 96.5 0.88 1.9E-05 56.4 25.5 246 140-392 269-598 (1051)
67 KOG0414 Chromosome condensatio 96.4 0.014 3E-07 73.7 10.6 150 74-227 920-1079(1251)
68 KOG2759 Vacuolar H+-ATPase V1 96.4 2.8 6E-05 48.7 28.7 365 120-541 60-439 (442)
69 PF04826 Arm_2: Armadillo-like 96.3 0.31 6.6E-06 53.7 19.1 173 148-341 15-204 (254)
70 cd00020 ARM Armadillo/beta-cat 96.3 0.031 6.8E-07 52.2 10.0 69 146-214 8-81 (120)
71 KOG1241 Karyopherin (importin) 96.3 4.7 0.0001 49.8 31.8 241 252-501 148-436 (859)
72 PF05918 API5: Apoptosis inhib 96.2 2.2 4.9E-05 51.7 27.2 106 75-216 25-130 (556)
73 COG1413 FOG: HEAT repeat [Ener 96.1 0.4 8.6E-06 54.3 19.5 211 110-390 43-253 (335)
74 KOG0915 Uncharacterized conser 96.1 0.52 1.1E-05 61.4 21.9 211 133-359 944-1177(1702)
75 KOG0211 Protein phosphatase 2A 96.0 1.7 3.8E-05 54.5 26.0 413 140-583 232-664 (759)
76 KOG1242 Protein containing ada 96.0 2 4.3E-05 51.9 25.0 224 155-395 27-264 (569)
77 KOG0946 ER-Golgi vesicle-tethe 96.0 6.5 0.00014 48.9 37.4 147 81-229 31-218 (970)
78 PF12755 Vac14_Fab1_bd: Vacuol 95.9 0.028 6.1E-07 52.7 7.6 70 139-209 21-94 (97)
79 COG5181 HSH155 U2 snRNP splice 95.8 2 4.3E-05 51.8 23.2 88 143-230 602-699 (975)
80 KOG1248 Uncharacterized conser 95.8 1.1 2.4E-05 57.4 22.6 268 61-373 599-892 (1176)
81 KOG2259 Uncharacterized conser 95.7 4.1 8.9E-05 49.6 25.6 78 327-405 387-465 (823)
82 TIGR02270 conserved hypothetic 95.7 1.2 2.6E-05 52.4 21.4 150 42-210 22-175 (410)
83 PF12348 CLASP_N: CLASP N term 95.6 0.43 9.3E-06 50.9 16.3 180 152-348 14-212 (228)
84 KOG4224 Armadillo repeat prote 95.6 1.4 3.1E-05 50.0 20.3 245 78-343 90-364 (550)
85 PF12460 MMS19_C: RNAPII trans 95.6 1.3 2.8E-05 52.1 21.5 230 88-359 163-411 (415)
86 TIGR02270 conserved hypothetic 95.4 1 2.2E-05 53.0 19.8 118 75-209 88-205 (410)
87 smart00638 LPD_N Lipoprotein N 95.3 0.71 1.5E-05 56.5 18.8 99 107-208 443-542 (574)
88 PF12755 Vac14_Fab1_bd: Vacuol 95.2 0.093 2E-06 49.3 8.5 68 308-376 22-93 (97)
89 COG5098 Chromosome condensatio 95.2 0.23 5.1E-06 59.9 13.3 174 76-265 895-1078(1128)
90 COG5215 KAP95 Karyopherin (imp 95.0 11 0.00024 45.4 36.0 153 57-209 241-435 (858)
91 COG5098 Chromosome condensatio 95.0 0.27 5.9E-06 59.4 13.2 129 86-214 275-418 (1128)
92 PF12830 Nipped-B_C: Sister ch 94.8 0.24 5.2E-06 51.9 11.2 117 113-229 11-140 (187)
93 KOG1240 Protein kinase contain 94.8 1.8 3.8E-05 55.7 19.8 256 137-418 454-728 (1431)
94 PF13646 HEAT_2: HEAT repeats; 94.7 0.18 3.8E-06 45.2 8.6 83 78-170 4-88 (88)
95 KOG1992 Nuclear export recepto 94.6 12 0.00026 46.9 25.5 337 8-396 331-710 (960)
96 PF02985 HEAT: HEAT repeat; I 94.5 0.06 1.3E-06 39.5 4.2 30 146-175 1-30 (31)
97 KOG1240 Protein kinase contain 94.4 10 0.00022 49.3 25.0 292 147-471 424-745 (1431)
98 KOG2274 Predicted importin 9 [ 94.3 21 0.00044 45.4 28.8 316 105-437 444-799 (1005)
99 KOG1991 Nuclear transport rece 94.3 22 0.00047 45.6 42.4 392 86-479 51-599 (1010)
100 PF12719 Cnd3: Nuclear condens 94.3 3 6.5E-05 46.8 19.2 104 107-210 24-142 (298)
101 PF13513 HEAT_EZ: HEAT-like re 94.1 0.11 2.4E-06 42.8 5.4 49 124-172 1-55 (55)
102 PF10363 DUF2435: Protein of u 93.9 0.18 4E-06 46.9 7.0 66 113-178 6-76 (92)
103 KOG0915 Uncharacterized conser 93.7 35 0.00076 45.7 31.5 139 292-432 1215-1361(1702)
104 PF12719 Cnd3: Nuclear condens 93.3 8.6 0.00019 43.2 20.5 68 147-214 29-96 (298)
105 KOG4224 Armadillo repeat prote 93.3 13 0.00029 42.6 21.2 268 76-369 170-468 (550)
106 PF01347 Vitellogenin_N: Lipop 93.3 1.1 2.5E-05 55.1 14.6 160 40-208 400-586 (618)
107 PF13513 HEAT_EZ: HEAT-like re 93.2 0.11 2.4E-06 42.9 3.9 49 159-207 1-53 (55)
108 KOG2160 Armadillo/beta-catenin 93.2 2.7 5.8E-05 48.0 15.9 109 149-266 128-243 (342)
109 PF10165 Ric8: Guanine nucleot 93.2 12 0.00026 44.7 22.3 238 155-395 42-336 (446)
110 KOG4199 Uncharacterized conser 93.1 19 0.00042 41.0 24.2 220 124-385 89-322 (461)
111 KOG2274 Predicted importin 9 [ 93.1 6.5 0.00014 49.5 20.0 111 120-230 501-624 (1005)
112 PF12231 Rif1_N: Rap1-interact 92.9 23 0.00049 41.3 24.3 256 83-373 3-297 (372)
113 PF13251 DUF4042: Domain of un 92.8 3.6 7.7E-05 43.2 15.1 152 161-345 2-177 (182)
114 COG5064 SRP1 Karyopherin (impo 92.7 17 0.00036 41.5 20.7 186 148-384 117-319 (526)
115 KOG2038 CAATT-binding transcri 92.6 35 0.00075 42.7 28.5 250 84-362 281-546 (988)
116 KOG1525 Sister chromatid cohes 92.6 42 0.0009 44.9 27.4 60 524-583 389-472 (1266)
117 PF08713 DNA_alkylation: DNA a 92.6 0.56 1.2E-05 49.4 9.3 134 76-216 54-189 (213)
118 KOG1943 Beta-tubulin folding c 92.4 44 0.00095 43.3 30.5 53 139-191 335-388 (1133)
119 PF14500 MMS19_N: Dos2-interac 92.2 13 0.00029 41.2 19.5 233 115-358 4-254 (262)
120 KOG1991 Nuclear transport rece 91.5 52 0.0011 42.3 35.6 67 146-212 90-157 (1010)
121 KOG1525 Sister chromatid cohes 91.5 63 0.0014 43.3 32.1 268 145-433 181-471 (1266)
122 PF10363 DUF2435: Protein of u 90.7 1.9 4.1E-05 40.2 9.3 70 146-215 4-76 (92)
123 KOG1822 Uncharacterized conser 90.7 29 0.00063 47.3 22.8 234 106-356 872-1141(2067)
124 PLN03076 ARF guanine nucleotid 90.2 95 0.0021 43.3 27.8 127 269-397 1131-1281(1780)
125 smart00638 LPD_N Lipoprotein N 90.1 55 0.0012 40.2 26.7 67 326-396 493-559 (574)
126 COG5218 YCG1 Chromosome conden 89.9 56 0.0012 39.9 22.9 56 332-390 287-343 (885)
127 KOG1293 Proteins containing ar 89.8 52 0.0011 40.6 22.3 133 123-266 390-536 (678)
128 PF14500 MMS19_N: Dos2-interac 89.7 37 0.00081 37.7 23.7 228 149-430 3-253 (262)
129 PF03224 V-ATPase_H_N: V-ATPas 89.0 14 0.0003 41.8 16.5 175 193-382 68-272 (312)
130 KOG2759 Vacuolar H+-ATPase V1 89.0 49 0.0011 38.9 20.6 64 315-378 368-437 (442)
131 KOG1293 Proteins containing ar 88.9 68 0.0015 39.6 30.1 109 313-433 461-575 (678)
132 PF08167 RIX1: rRNA processing 88.9 6 0.00013 40.6 12.4 120 110-231 25-163 (165)
133 COG5064 SRP1 Karyopherin (impo 88.1 12 0.00026 42.5 14.5 293 74-414 72-397 (526)
134 cd00256 VATPase_H VATPase_H, r 88.0 66 0.0014 38.3 23.6 25 353-377 399-423 (429)
135 KOG4524 Uncharacterized conser 87.9 74 0.0016 41.0 22.6 69 310-378 800-875 (1014)
136 PF04388 Hamartin: Hamartin pr 87.6 20 0.00043 45.1 17.9 102 129-233 55-162 (668)
137 PF05004 IFRD: Interferon-rela 87.3 58 0.0013 37.0 21.5 53 327-379 200-260 (309)
138 PF10274 ParcG: Parkin co-regu 87.3 5.2 0.00011 42.0 10.7 111 174-295 28-145 (183)
139 cd06561 AlkD_like A new struct 87.2 8.8 0.00019 39.8 12.6 68 148-216 108-175 (197)
140 PF14631 FancD2: Fanconi anaem 87.0 43 0.00094 45.6 21.5 161 57-220 346-511 (1426)
141 COG5218 YCG1 Chromosome conden 86.9 85 0.0018 38.4 24.1 100 308-409 86-193 (885)
142 PF08167 RIX1: rRNA processing 86.9 10 0.00022 38.9 12.6 136 178-356 21-157 (165)
143 KOG0413 Uncharacterized conser 86.8 87 0.0019 40.4 21.9 72 309-380 612-686 (1529)
144 PF11707 Npa1: Ribosome 60S bi 86.7 25 0.00054 40.2 16.9 237 89-362 42-320 (330)
145 KOG2213 Apoptosis inhibitor 5/ 86.5 20 0.00043 41.6 15.4 64 333-396 44-107 (460)
146 PF01347 Vitellogenin_N: Lipop 86.4 38 0.00083 41.8 19.6 67 326-396 537-603 (618)
147 PF00790 VHS: VHS domain; Int 86.0 14 0.0003 36.8 12.7 106 147-261 7-116 (140)
148 KOG1967 DNA repair/transcripti 85.7 1.1E+02 0.0023 39.5 22.1 237 143-430 41-300 (1030)
149 KOG1949 Uncharacterized conser 85.5 29 0.00063 43.0 16.8 192 139-382 167-373 (1005)
150 PF05004 IFRD: Interferon-rela 85.5 72 0.0016 36.3 21.1 185 147-344 45-259 (309)
151 PF08506 Cse1: Cse1; InterPro 85.1 11 0.00024 43.9 13.1 155 12-169 184-370 (370)
152 KOG4653 Uncharacterized conser 84.7 48 0.001 42.1 18.5 68 147-214 729-800 (982)
153 KOG0168 Putative ubiquitin fus 84.6 1.3E+02 0.0028 38.4 22.1 178 113-313 170-375 (1051)
154 COG5231 VMA13 Vacuolar H+-ATPa 84.2 61 0.0013 36.9 17.4 66 314-379 357-428 (432)
155 KOG4535 HEAT and armadillo rep 83.9 6.1 0.00013 46.6 10.0 125 84-210 23-178 (728)
156 KOG2062 26S proteasome regulat 83.4 4 8.8E-05 50.2 8.7 143 56-205 503-647 (929)
157 KOG1248 Uncharacterized conser 83.3 1.7E+02 0.0036 38.7 39.6 315 249-581 493-854 (1176)
158 PF11864 DUF3384: Domain of un 83.3 1.1E+02 0.0024 36.7 31.1 303 125-433 5-354 (464)
159 KOG0211 Protein phosphatase 2A 82.6 1.5E+02 0.0033 37.8 27.6 327 91-437 218-568 (759)
160 PF12830 Nipped-B_C: Sister ch 82.3 21 0.00046 37.4 12.7 70 309-381 4-76 (187)
161 PF14664 RICTOR_N: Rapamycin-i 82.3 60 0.0013 37.9 17.6 125 84-210 36-175 (371)
162 KOG0251 Clathrin assembly prot 81.8 57 0.0012 39.5 17.4 108 142-253 20-130 (491)
163 PF14664 RICTOR_N: Rapamycin-i 81.5 1.1E+02 0.0025 35.6 21.7 167 167-381 5-178 (371)
164 KOG1993 Nuclear transport rece 81.5 1.6E+02 0.0036 37.4 28.2 319 139-481 520-866 (978)
165 KOG1820 Microtubule-associated 81.5 60 0.0013 41.6 18.2 190 139-351 247-453 (815)
166 KOG2956 CLIP-associating prote 81.4 23 0.0005 42.0 13.4 105 327-434 301-417 (516)
167 KOG1967 DNA repair/transcripti 81.3 34 0.00073 43.7 15.5 156 12-171 674-857 (1030)
168 KOG1932 TATA binding protein a 81.1 1.7E+02 0.0036 38.6 21.6 126 110-261 646-778 (1180)
169 KOG2062 26S proteasome regulat 80.9 33 0.00072 42.7 15.0 154 38-206 452-613 (929)
170 KOG1517 Guanine nucleotide bin 80.9 14 0.00031 47.4 12.2 133 75-212 514-672 (1387)
171 KOG2956 CLIP-associating prote 80.4 43 0.00093 39.9 15.1 80 313-397 406-491 (516)
172 PF11698 V-ATPase_H_C: V-ATPas 80.2 3.1 6.7E-05 40.6 5.2 64 315-378 45-114 (119)
173 PF08713 DNA_alkylation: DNA a 79.9 3.3 7.1E-05 43.6 5.8 75 112-186 122-196 (213)
174 KOG2973 Uncharacterized conser 79.8 1.2E+02 0.0025 34.7 18.7 49 147-196 5-58 (353)
175 PF01603 B56: Protein phosphat 79.6 1.3E+02 0.0029 35.5 19.6 69 143-211 131-204 (409)
176 PF12530 DUF3730: Protein of u 79.4 99 0.0021 33.6 19.6 128 122-263 13-151 (234)
177 KOG2137 Protein kinase [Signal 79.1 86 0.0019 39.2 17.8 174 146-343 241-419 (700)
178 COG5593 Nucleic-acid-binding p 78.5 1.6E+02 0.0036 35.6 22.0 59 149-207 194-253 (821)
179 PF11935 DUF3453: Domain of un 78.4 20 0.00042 39.2 11.3 145 153-323 1-163 (239)
180 PF12074 DUF3554: Domain of un 78.2 1.3E+02 0.0028 34.3 26.0 53 122-174 35-90 (339)
181 cd03561 VHS VHS domain family; 77.9 30 0.00066 34.1 11.6 90 89-178 16-116 (133)
182 KOG1993 Nuclear transport rece 77.2 2.2E+02 0.0047 36.3 23.7 67 165-231 101-180 (978)
183 cd00197 VHS_ENTH_ANTH VHS, ENT 77.0 45 0.00097 31.8 12.2 72 150-221 5-76 (115)
184 KOG4413 26S proteasome regulat 77.0 1.4E+02 0.0031 34.1 19.5 30 601-632 488-517 (524)
185 PF10165 Ric8: Guanine nucleot 76.8 1.1E+02 0.0025 36.5 18.0 58 290-347 45-113 (446)
186 PF00790 VHS: VHS domain; Int 76.5 27 0.00059 34.8 10.9 96 81-176 13-120 (140)
187 smart00288 VHS Domain present 76.0 45 0.00097 33.0 12.2 92 162-262 17-110 (133)
188 KOG1949 Uncharacterized conser 75.4 2.3E+02 0.005 35.7 22.2 101 109-209 173-290 (1005)
189 PF03224 V-ATPase_H_N: V-ATPas 75.4 1.5E+02 0.0032 33.5 18.1 65 147-211 107-179 (312)
190 PF12460 MMS19_C: RNAPII trans 75.1 1.8E+02 0.0039 34.3 31.2 74 308-381 318-396 (415)
191 PF10274 ParcG: Parkin co-regu 74.9 22 0.00048 37.4 9.9 88 143-230 36-128 (183)
192 KOG2933 Uncharacterized conser 73.6 34 0.00074 38.7 11.4 117 91-210 71-198 (334)
193 KOG4500 Rho/Rac GTPase guanine 73.5 1.8E+02 0.004 34.5 17.5 104 107-210 266-389 (604)
194 PF12765 Cohesin_HEAT: HEAT re 73.4 2.8 6E-05 33.3 2.3 39 336-374 2-42 (42)
195 KOG2032 Uncharacterized conser 73.3 1.9E+02 0.0041 34.9 17.9 135 86-220 229-380 (533)
196 KOG1243 Protein kinase [Genera 73.1 28 0.0006 43.2 11.6 162 8-175 248-438 (690)
197 KOG0413 Uncharacterized conser 72.8 89 0.0019 40.3 15.6 70 138-207 609-681 (1529)
198 KOG0567 HEAT repeat-containing 72.6 1.7E+02 0.0036 32.8 19.3 93 469-582 187-279 (289)
199 cd03568 VHS_STAM VHS domain fa 72.5 59 0.0013 32.8 12.1 90 163-262 18-109 (144)
200 COG5116 RPN2 26S proteasome re 72.5 12 0.00027 45.0 8.1 120 79-204 522-643 (926)
201 cd03569 VHS_Hrs_Vps27p VHS dom 71.4 72 0.0016 32.1 12.5 104 149-262 8-113 (142)
202 cd03567 VHS_GGA VHS domain fam 71.4 81 0.0017 31.7 12.7 105 152-262 8-115 (139)
203 PF08623 TIP120: TATA-binding 71.2 9.8 0.00021 39.5 6.3 56 160-216 42-99 (169)
204 KOG2160 Armadillo/beta-catenin 70.8 1.3E+02 0.0028 34.8 15.5 97 118-214 132-243 (342)
205 KOG1820 Microtubule-associated 70.7 1.2E+02 0.0026 39.1 16.7 110 105-214 331-446 (815)
206 cd03561 VHS VHS domain family; 70.3 75 0.0016 31.4 12.2 92 162-261 17-110 (133)
207 KOG2005 26S proteasome regulat 70.2 57 0.0012 40.4 13.0 124 123-264 621-744 (878)
208 cd03572 ENTH_epsin_related ENT 69.9 42 0.00091 33.1 10.0 58 175-232 31-88 (122)
209 KOG1243 Protein kinase [Genera 69.6 39 0.00085 41.9 11.7 89 308-396 325-415 (690)
210 KOG2213 Apoptosis inhibitor 5/ 68.7 2.4E+02 0.0053 33.1 27.2 71 85-155 36-106 (460)
211 smart00288 VHS Domain present 68.5 57 0.0012 32.3 10.9 96 81-176 8-113 (133)
212 KOG1222 Kinesin associated pro 68.2 2.8E+02 0.006 33.5 21.6 110 88-213 301-415 (791)
213 cd03568 VHS_STAM VHS domain fa 68.2 65 0.0014 32.5 11.3 81 92-172 19-108 (144)
214 cd06561 AlkD_like A new struct 67.6 14 0.0003 38.3 6.8 76 113-188 108-184 (197)
215 PF03378 CAS_CSE1: CAS/CSE pro 67.5 2.7E+02 0.0059 33.3 19.0 140 246-397 42-190 (435)
216 KOG2038 CAATT-binding transcri 67.5 2.7E+02 0.0058 35.4 17.9 72 144-215 303-374 (988)
217 KOG2149 Uncharacterized conser 67.0 41 0.00089 39.3 10.7 63 148-210 61-127 (393)
218 PF12530 DUF3730: Protein of u 66.9 1.9E+02 0.0042 31.3 18.5 124 292-416 16-152 (234)
219 PF08389 Xpo1: Exportin 1-like 66.7 56 0.0012 31.7 10.6 46 159-205 2-48 (148)
220 PF10521 DUF2454: Protein of u 66.0 50 0.0011 36.9 11.2 68 310-377 116-201 (282)
221 PF11707 Npa1: Ribosome 60S bi 66.0 1.7E+02 0.0037 33.4 15.7 28 246-273 68-96 (330)
222 KOG0946 ER-Golgi vesicle-tethe 65.9 3.8E+02 0.0082 34.3 34.9 268 90-374 107-432 (970)
223 PF02985 HEAT: HEAT repeat; I 65.8 11 0.00024 27.5 3.9 29 183-211 1-29 (31)
224 PF10521 DUF2454: Protein of u 65.0 59 0.0013 36.3 11.4 71 141-211 115-203 (282)
225 KOG2025 Chromosome condensatio 64.8 3.8E+02 0.0082 33.9 36.4 163 36-204 6-186 (892)
226 cd03569 VHS_Hrs_Vps27p VHS dom 64.7 76 0.0016 31.9 11.0 81 96-176 27-116 (142)
227 cd03567 VHS_GGA VHS domain fam 64.4 51 0.0011 33.1 9.6 55 291-348 19-73 (139)
228 COG5110 RPN1 26S proteasome re 62.9 2.5E+02 0.0053 34.4 16.0 47 184-230 49-102 (881)
229 KOG2933 Uncharacterized conser 62.9 12 0.00026 42.2 5.3 103 72-175 128-235 (334)
230 PF06371 Drf_GBD: Diaphanous G 61.2 16 0.00035 37.5 5.8 26 353-378 161-186 (187)
231 KOG4413 26S proteasome regulat 59.5 3.3E+02 0.0071 31.4 22.5 155 56-211 65-243 (524)
232 PF11698 V-ATPase_H_C: V-ATPas 58.3 13 0.00029 36.4 4.1 30 314-343 87-116 (119)
233 PF13251 DUF4042: Domain of un 56.4 76 0.0016 33.4 9.7 118 89-210 18-173 (182)
234 PF01603 B56: Protein phosphat 56.0 4.1E+02 0.0089 31.5 21.3 181 182-374 133-321 (409)
235 KOG2051 Nonsense-mediated mRNA 55.5 6.3E+02 0.014 33.4 23.9 295 48-417 453-791 (1128)
236 KOG2199 Signal transducing ada 54.9 1.1E+02 0.0024 35.8 11.2 90 76-165 11-109 (462)
237 COG5116 RPN2 26S proteasome re 54.8 98 0.0021 37.8 11.1 104 86-201 495-605 (926)
238 KOG0567 HEAT repeat-containing 54.8 99 0.0021 34.5 10.4 86 111-206 188-275 (289)
239 KOG2549 Transcription initiati 54.1 1.9E+02 0.0041 35.3 13.4 45 144-193 206-250 (576)
240 PF12765 Cohesin_HEAT: HEAT re 53.6 20 0.00043 28.5 3.7 22 145-166 18-39 (42)
241 COG5231 VMA13 Vacuolar H+-ATPa 52.2 3.4E+02 0.0074 31.3 14.1 191 295-501 167-387 (432)
242 PF13001 Ecm29: Proteasome sta 52.2 3.6E+02 0.0078 32.8 15.9 53 325-377 386-441 (501)
243 KOG4535 HEAT and armadillo rep 52.1 1.8E+02 0.0038 35.1 12.4 154 156-344 7-181 (728)
244 PF12397 U3snoRNP10: U3 small 51.9 1.4E+02 0.003 28.7 10.2 100 311-418 4-108 (121)
245 PF08569 Mo25: Mo25-like; Int 51.7 4.4E+02 0.0095 30.5 19.7 84 313-396 209-308 (335)
246 PF00514 Arm: Armadillo/beta-c 50.9 28 0.00061 26.8 4.2 28 146-173 13-40 (41)
247 cd07064 AlkD_like_1 A new stru 50.8 3.4E+02 0.0073 29.0 16.0 136 78-218 51-186 (208)
248 PF12074 DUF3554: Domain of un 50.7 4.3E+02 0.0093 30.1 17.3 111 126-236 3-120 (339)
249 KOG2137 Protein kinase [Signal 50.5 4.3E+02 0.0094 33.4 16.0 61 316-376 352-415 (700)
250 smart00273 ENTH Epsin N-termin 49.9 2.4E+02 0.0051 27.5 11.5 71 146-216 3-74 (127)
251 cd03572 ENTH_epsin_related ENT 46.8 34 0.00074 33.7 5.0 46 336-381 24-69 (122)
252 PF08324 PUL: PUL domain; Int 46.1 4.3E+02 0.0093 28.8 14.2 193 10-210 13-230 (268)
253 KOG2140 Uncharacterized conser 46.0 3.3E+02 0.0071 33.3 13.4 23 370-392 167-189 (739)
254 PF08569 Mo25: Mo25-like; Int 45.3 5.4E+02 0.012 29.7 23.8 172 9-215 8-197 (335)
255 cd00197 VHS_ENTH_ANTH VHS, ENT 45.0 81 0.0017 30.0 7.3 67 311-377 35-113 (115)
256 PHA02939 hypothetical protein; 44.6 97 0.0021 30.2 7.4 103 378-498 13-119 (144)
257 TIGR02414 pepN_proteo aminopep 43.4 7.7E+02 0.017 32.3 17.6 162 88-288 670-854 (863)
258 KOG1222 Kinesin associated pro 43.2 6.9E+02 0.015 30.4 29.1 357 195-583 276-663 (791)
259 PF11701 UNC45-central: Myosin 42.1 1.8E+02 0.0039 29.6 9.7 117 156-281 16-138 (157)
260 KOG0392 SNF2 family DNA-depend 42.0 4.9E+02 0.011 35.1 15.0 108 292-399 144-263 (1549)
261 cd08050 TAF6 TATA Binding Prot 41.5 6E+02 0.013 29.4 14.9 147 182-341 178-339 (343)
262 PRK07003 DNA polymerase III su 41.5 8.4E+02 0.018 31.6 16.8 76 364-446 164-239 (830)
263 KOG0368 Acetyl-CoA carboxylase 39.9 5.5E+02 0.012 35.3 15.0 46 351-396 929-974 (2196)
264 KOG0889 Histone acetyltransfer 39.7 1.7E+03 0.036 33.8 20.5 268 78-349 1038-1353(3550)
265 PF13001 Ecm29: Proteasome sta 38.6 1.6E+02 0.0035 35.8 10.1 123 83-208 295-440 (501)
266 PLN03076 ARF guanine nucleotid 38.2 1.4E+03 0.031 32.5 25.0 102 110-211 1137-1253(1780)
267 KOG0891 DNA-dependent protein 38.1 1.6E+03 0.034 33.0 21.0 80 127-206 461-553 (2341)
268 cd03564 ANTH_AP180_CALM ANTH d 36.9 1.9E+02 0.0041 27.8 8.4 69 149-217 4-72 (117)
269 PF11865 DUF3385: Domain of un 36.6 3.3E+02 0.0072 27.8 10.6 34 316-349 13-47 (160)
270 PF02854 MIF4G: MIF4G domain; 36.2 3.3E+02 0.0072 27.6 10.8 58 373-432 7-64 (209)
271 PF04388 Hamartin: Hamartin pr 35.7 4.3E+02 0.0092 33.5 13.4 142 184-356 6-154 (668)
272 KOG2149 Uncharacterized conser 34.9 2.9E+02 0.0062 32.6 10.7 109 316-425 61-180 (393)
273 PF13764 E3_UbLigase_R4: E3 ub 34.1 1.2E+03 0.025 30.4 17.6 56 247-302 242-299 (802)
274 COG5117 NOC3 Protein involved 33.5 9.3E+02 0.02 29.1 20.5 134 11-148 182-332 (657)
275 PF06685 DUF1186: Protein of u 32.9 7.2E+02 0.016 27.6 13.2 66 188-266 48-113 (249)
276 PF08506 Cse1: Cse1; InterPro 32.4 8.7E+02 0.019 28.4 23.7 106 291-396 225-357 (370)
277 KOG4524 Uncharacterized conser 32.3 3.2E+02 0.0069 35.7 11.2 74 141-214 799-879 (1014)
278 KOG1517 Guanine nucleotide bin 32.3 2E+02 0.0044 37.7 9.4 101 77-177 603-735 (1387)
279 PF06371 Drf_GBD: Diaphanous G 31.5 2.2E+02 0.0048 29.0 8.6 51 291-341 130-186 (187)
280 KOG4653 Uncharacterized conser 31.1 1.3E+03 0.029 30.1 21.3 66 120-185 737-809 (982)
281 PF08623 TIP120: TATA-binding 30.9 70 0.0015 33.3 4.6 57 295-353 48-105 (169)
282 KOG0803 Predicted E3 ubiquitin 30.7 1.6E+03 0.035 30.9 20.8 132 103-239 39-183 (1312)
283 smart00185 ARM Armadillo/beta- 30.3 71 0.0015 23.8 3.5 28 146-173 13-40 (41)
284 PF14663 RasGEF_N_2: Rapamycin 29.9 1.1E+02 0.0025 29.5 5.6 31 183-213 9-39 (115)
285 KOG2973 Uncharacterized conser 29.7 3.9E+02 0.0085 30.7 10.2 60 114-175 7-72 (353)
286 PF12397 U3snoRNP10: U3 small 29.0 5.1E+02 0.011 24.8 10.1 37 141-177 2-39 (121)
287 PF08767 CRM1_C: CRM1 C termin 28.4 9.3E+02 0.02 27.5 18.9 73 308-380 112-195 (319)
288 PF07749 ERp29: Endoplasmic re 27.8 5E+02 0.011 24.2 9.3 51 401-452 19-73 (95)
289 KOG0989 Replication factor C, 27.8 1.9E+02 0.0042 33.0 7.6 87 311-406 142-228 (346)
290 KOG2199 Signal transducing ada 27.5 3.5E+02 0.0076 31.8 9.6 86 148-233 11-98 (462)
291 PF11865 DUF3385: Domain of un 27.4 5.2E+02 0.011 26.4 10.2 35 103-140 7-41 (160)
292 KOG2256 Predicted protein invo 27.1 1.4E+03 0.029 28.9 19.8 59 125-183 257-321 (661)
293 PF08767 CRM1_C: CRM1 C termin 27.0 9.8E+02 0.021 27.3 20.0 35 308-342 160-194 (319)
294 COG5117 NOC3 Protein involved 26.8 6.5E+02 0.014 30.3 11.6 48 130-177 430-482 (657)
295 cd07064 AlkD_like_1 A new stru 26.8 2.9E+02 0.0064 29.4 8.6 75 112-186 117-191 (208)
296 PF11935 DUF3453: Domain of un 26.0 5.6E+02 0.012 27.9 10.8 103 109-221 42-155 (239)
297 PF04118 Dopey_N: Dopey, N-ter 25.8 1E+03 0.022 27.1 14.9 82 291-377 171-252 (307)
298 cd03565 VHS_Tom1 VHS domain fa 25.7 6.9E+02 0.015 25.0 12.4 94 161-262 17-114 (141)
299 PF14225 MOR2-PAG1_C: Cell mor 25.6 9.6E+02 0.021 26.7 17.7 34 345-378 183-216 (262)
300 KOG1087 Cytosolic sorting prot 25.1 3E+02 0.0066 33.3 9.1 63 313-375 38-108 (470)
301 PF12612 TFCD_C: Tubulin foldi 24.2 4.3E+02 0.0093 27.7 9.2 33 141-173 3-35 (193)
302 cd03565 VHS_Tom1 VHS domain fa 24.1 2.5E+02 0.0054 28.2 7.1 56 291-349 19-75 (141)
303 PF08045 CDC14: Cell division 23.2 6.9E+02 0.015 27.9 10.8 66 312-377 132-205 (257)
304 cd08050 TAF6 TATA Binding Prot 23.2 7.1E+02 0.015 28.8 11.4 60 120-179 188-250 (343)
305 PF06685 DUF1186: Protein of u 23.1 2.5E+02 0.0055 31.1 7.4 62 148-209 114-181 (249)
306 KOG0891 DNA-dependent protein 23.1 2.6E+03 0.057 30.9 34.0 163 248-415 395-594 (2341)
307 PF11532 HnRNP_M: Heterogeneou 23.0 32 0.00069 25.3 0.3 12 651-662 17-28 (30)
308 PF11841 DUF3361: Domain of un 22.5 4.7E+02 0.01 27.1 8.6 107 315-423 13-138 (160)
309 PF00514 Arm: Armadillo/beta-c 22.4 1.4E+02 0.0031 22.8 4.0 28 183-210 13-40 (41)
310 PLN03119 putative ADP-ribosyla 22.4 5.4E+02 0.012 31.8 10.3 54 827-888 322-375 (648)
311 KOG2011 Sister chromatid cohes 22.1 2E+03 0.043 29.2 25.9 57 324-380 298-356 (1048)
312 PF07539 DRIM: Down-regulated 21.8 8.3E+02 0.018 24.6 11.8 83 143-232 15-101 (141)
313 PF13929 mRNA_stabil: mRNA sta 21.7 7.8E+02 0.017 28.0 10.8 78 374-453 171-250 (292)
314 PRK14015 pepN aminopeptidase N 21.7 1.9E+03 0.042 28.8 17.8 161 89-288 681-864 (875)
315 PF08568 Kinetochor_Ybp2: Unch 21.6 6.4E+02 0.014 31.6 11.5 55 154-210 451-506 (633)
316 PF07778 CENP-I: Mis6 ; Inter 21.3 8.2E+02 0.018 30.0 11.8 92 289-385 113-208 (511)
317 PF09324 DUF1981: Domain of un 21.2 3E+02 0.0066 25.1 6.4 63 313-375 17-84 (86)
318 PLN03131 hypothetical protein; 20.7 4E+02 0.0086 33.2 8.8 54 827-888 358-411 (705)
319 PF00613 PI3Ka: Phosphoinositi 20.4 6.8E+02 0.015 26.3 9.7 98 48-155 24-121 (184)
320 smart00340 HALZ homeobox assoc 20.2 73 0.0016 25.5 1.8 23 23-45 14-36 (44)
No 1
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-133 Score=1153.08 Aligned_cols=848 Identities=32% Similarity=0.488 Sum_probs=727.4
Q ss_pred CCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcC
Q 002083 5 GGFGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHD 84 (969)
Q Consensus 5 ~~~~~sk~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS 84 (969)
+.+..+.+|+||||+||.+||++|||++|++|++.||..|++++.+.+.||++|.||+|++||||+++||++|++||++|
T Consensus 2 ~~~~~~srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias 81 (866)
T KOG1062|consen 2 NMFAPSSRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIAS 81 (866)
T ss_pred CCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcC
Confidence 45556689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHH
Q 002083 85 DNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRK 164 (969)
Q Consensus 85 ~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKk 164 (969)
++|.+||+|||++++++++++|+++|+||+|+|||+|+|.+++|+||.++|+|+++||++++.|+|.++|.|++||||||
T Consensus 82 ~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKK 161 (866)
T KOG1062|consen 82 DNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKK 161 (866)
T ss_pred CCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc---hhhHHHHHHHHHHHHHHHhccCCCCcC
Q 002083 165 AIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV---NSYKDLVISFVSILKQVAERRLPKSYD 241 (969)
Q Consensus 165 A~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p---~~~~~Lv~~lv~iLk~l~~~~lp~~y~ 241 (969)
|++|++|+.++.|++++++++.++++|||+|++|+.+++++++++|+.++ ..|+++++.|+.+|+++++.++|++||
T Consensus 162 A~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd 241 (866)
T KOG1062|consen 162 AALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD 241 (866)
T ss_pred HHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Confidence 99999999999999999999999999999999999999999999999865 479999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002083 242 YHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARF 321 (969)
Q Consensus 242 y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~f 321 (969)
||++++||+||+|||+|+.|+..|++.++.|.++|.++.+++|+++|+|+||+|||++||+.|.+++.|+..++++|++|
T Consensus 242 v~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkF 321 (866)
T KOG1062|consen 242 VHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKF 321 (866)
T ss_pred ccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChh
Q 002083 322 LKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNH 401 (969)
Q Consensus 322 L~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~ 401 (969)
|.++|+|+||+||..|.++++.+|.++++|+..|++||+|||.+|||+||||+|+|+|++||..+++||++|+.. .|++
T Consensus 322 L~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~-~d~~ 400 (866)
T KOG1062|consen 322 LLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLES-SDED 400 (866)
T ss_pred hcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh-ccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 4999
Q ss_pred hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCC
Q 002083 402 YKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEP 481 (969)
Q Consensus 402 ~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~ 481 (969)
||.+++.+|+.+||+|+|+..||||+|+++|+.+|++|.+++|++++++|+++|+ +.+++++.++...+...
T Consensus 401 ~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~--------e~~~y~~~rLy~a~~~~ 472 (866)
T KOG1062|consen 401 FKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQ--------ELHEYAVLRLYLALSED 472 (866)
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCc--------chhhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999998774 44556665555444332
Q ss_pred ----CCchhHHHHHHHHhccccCC--CC-------CCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcccc
Q 002083 482 ----KLPSVFLQVICWVLGEYGTA--DG-------KVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRK 548 (969)
Q Consensus 482 ----~~~e~l~~~i~WILGEY~~~--~~-------~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~ 548 (969)
...+.++++++|||||||++ ++ ++++++|++.+++.+..+..+.++|+|+|+|++||+++.+.
T Consensus 473 ~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s---- 548 (866)
T KOG1062|consen 473 TLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS---- 548 (866)
T ss_pred hhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc----
Confidence 23445689999999999963 22 57789999999999998888899999999999999998653
Q ss_pred CCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHhcCCHHHHHhhCCCCCCCccccccccccchhHHHHHHHhcCCCCCCCC
Q 002083 549 VDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALEKGAQPYIPE 628 (969)
Q Consensus 549 ~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~~e~l~~vlP~d~s~ed~~~d~~lsfl~~~v~~~l~~Ga~~y~p~ 628 (969)
..+++++++..+..|.|.|+||||+||..|+..+..+.+.++|.+++||++.+|..+ +|+....+.+|++||.+-
T Consensus 549 --~~~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~mp~~e~~~~~~~~---~g~~~~~i~~~~~p~~~~ 623 (866)
T KOG1062|consen 549 --SSERIKQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILERMPSCEDITVDARL---DGNGPAAIEQGAEPYKSA 623 (866)
T ss_pred --cHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccccc---ccchHHHHHhccCCCccc
Confidence 257899999999999999999999999999998989999999999999999999887 899999999999999997
Q ss_pred cccccccccCCCCcccccccccCccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCc
Q 002083 629 NERSGMLSVSNFRSQDQHEASIHGLRFEAYELPKPSVPSRPPVSLASATELAPVPEPSYPRVTQNVASVPSVSSADPSDL 708 (969)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~y~~p~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (969)
-++.+...-++...++..+...+.++|..|.+|....+++ .+++++|+|.+ +...-+.+. .-..++...+.-
T Consensus 624 ~~~~~~~~l~d~~~~~~~~~~~s~~~~l~~~L~~~~~~p~------~~~~~~p~p~~-~~~~~~~I~-~~~~s~~~~~~~ 695 (866)
T KOG1062|consen 624 GESLGVAELSDLLPLDSKETPTSSLNDLEDLLDKDESSPG------ASNGAAPVPSE-GGNVLQDIL-GDVLSQSKNSKE 695 (866)
T ss_pred ccccccchhhhccCCCCCcCCcccccchhccCCCccCCCC------CCCCCCCCCCC-ccchhhhhh-hccccccccchh
Confidence 7776665556776666666778999999999988654433 33455666655 222122221 112344555677
Q ss_pred ceeecccccccCCCCCCCCCCCCCCCCcccccCcccccccccccccccccCcccCCCCCCCCCChHHHHHHHhhhCCC-C
Q 002083 709 RLRLDGVQKKWGRPTYTPSETSTSTSTSEKTVNGVTKVDAARDTIYSKVRDTTYDSRKPDAEIPLEKQKLAASLFGGS-S 787 (969)
Q Consensus 709 ~l~~~gv~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~la~~lf~g~-~ 787 (969)
++.|.|++-+| .. .+.+++++++...+ +++..+ +++++.+ +++|+.||++ |++. +
T Consensus 696 ~~~L~~~~~~~-----~~------~s~a~~~~s~~sp~-------~s~~~s-~l~~l~p----~p~~~~~~~~-~~~~~~ 751 (866)
T KOG1062|consen 696 KLDLAGSLFVG-----SS------SSAAPPAPSGTSPS-------SSQPFS-LLSGLSP----DPSKNTLAAT-DYPSIK 751 (866)
T ss_pred ccccccccccc-----cC------CCCCCCCcCCCCCc-------CCCcch-hhcccCC----Cccccccccc-cCCcce
Confidence 89999999999 10 12222333333111 334444 6777666 7899999999 8888 5
Q ss_pred CCCCCCCCcCCCCCCCCccccccccccccccccccccccCCCCCcccccCCCccccCCCCCChhhhhhcccCCCCCCCCC
Q 002083 788 KTERRASTTGHRAGKASSHVIEKPQASKASDKTVAEKTIVQPPPDLLDLGEPAVLSRSPSIDPFKQLEGLLDSPQVPSNS 867 (969)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (969)
..++++....+...|+++. +..++...--++.+|++|+.||+.|+.+... ..+++..++|.+.+++..
T Consensus 752 ~~dkssl~~~~~~~k~~~n--------~~~t~i~~~~tn~s~~~~l~~F~~~aAv~ks-~ql~l~~~ss~~~~~~~~--- 819 (866)
T KOG1062|consen 752 AYDKSSLLVELSFTKGPSN--------KKTTVITLTFTNLSPNTDLTDFHFQAAVPKS-LQLQLQPASSNSLPASGG--- 819 (866)
T ss_pred eeecccceeeeeeccCCCC--------CceeEEEeeccCCCCCcchhhhcccccchHH-HhhccCCccccccCcCCC---
Confidence 7888888888888888665 5555555455669999999999998766544 455555555555444333
Q ss_pred CCCCCCCCCCcchhhhccccCCCCCCCCccCCCCCCCCcccccccccccccCCCCCCCCcccccccccCCCchhhhhhhh
Q 002083 868 NHGAAGANKDSDIIGLHAETAGSGPSSGIVNPVPTNKNDLDLLSGLSNSTTNNALGGTPTAHSTQVSKGPNTKDSLEKDS 947 (969)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (969)
....+.|.++.++. .+ .-+-.-+ .-..+|-+.++..|.|.
T Consensus 820 -------g~~tq~~rv~n~~~---~~-------------l~~r~rl-----------------~~~~~G~s~~e~~ev~~ 859 (866)
T KOG1062|consen 820 -------GHITQVLRVLNPQK---ST-------------LKLRLRL-----------------SYSLNGSSVLENFEVDN 859 (866)
T ss_pred -------CcceeEEEEecCCC---ce-------------EEEEEEE-----------------EeecCCchHHhhhhhcc
Confidence 44556777776651 00 0011111 12456777799999999
Q ss_pred hhhhccc
Q 002083 948 LVRQMGV 954 (969)
Q Consensus 948 ~~~~~~~ 954 (969)
+.||+++
T Consensus 860 ~p~~~~~ 866 (866)
T KOG1062|consen 860 LPRQLLQ 866 (866)
T ss_pred CcccccC
Confidence 9999874
No 2
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-90 Score=783.65 Aligned_cols=556 Identities=25% Similarity=0.450 Sum_probs=509.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcch
Q 002083 11 KEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEP-DIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVL 89 (969)
Q Consensus 11 k~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~~~-~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~ 89 (969)
|.|.-||.+||+|+++|+|+++|++|+++||.+|+.. .++.|++|+||+||+|++|+|||++|||+++|+|+++++|.+
T Consensus 11 rGL~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysE 90 (938)
T KOG1077|consen 11 RGLAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSE 90 (938)
T ss_pred hhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccH
Confidence 7899999999999999999999999999999999876 789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCC--CChHHHHHHHH
Q 002083 90 KRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGH--SKEAVRRKAIM 167 (969)
Q Consensus 90 KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d--~~pyVRKkA~l 167 (969)
|.+|||+++.++++++|++-|++|+|+|||.+.|+..+|+||.++++|+..+|++.+.++|-++|.+ +.+||||||++
T Consensus 91 KqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaAL 170 (938)
T KOG1077|consen 91 KQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAAL 170 (938)
T ss_pred HHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999974 67999999999
Q ss_pred HHHHHHhhCCcchh--hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHH-hccCC-CCcCCC
Q 002083 168 ALHRFYQKSPSSVQ--HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVA-ERRLP-KSYDYH 243 (969)
Q Consensus 168 al~kiy~~~Pe~v~--~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~-~~~lp-~~y~y~ 243 (969)
|++|+|+..||++. .|.+.+..+|.|.|.+|+.|+..++.-+++.+|+.|+..++..+..|..++ .+..+ .||.|+
T Consensus 171 clL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy 250 (938)
T KOG1077|consen 171 CLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYY 250 (938)
T ss_pred HHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceee
Confidence 99999999999986 699999999999999999999999988999999999999998888888765 45566 799999
Q ss_pred CCCChhHHHHHHHHHHHhCC-CChHHHhhhHHHHHHhHhccC--------CCCCCCchHHHHHHHHHHhcCCCHHHHHHH
Q 002083 244 QMPAPFIQIRLLKILALLGS-GDKQASENMYTVVGDIFRKCD--------SSSNIGNAVLYECICCVSSIYANPKLIESA 314 (969)
Q Consensus 244 ~v~~PWlQikLLklL~~l~~-~d~~~se~l~~iL~~iL~~~~--------~~~Ni~~AVlyEaik~I~~l~~~~~ll~~a 314 (969)
.+|+||+|+|++|+|..|.+ .|+.....+.++|+.+|...+ +++|+.+||+||+|++++++++.++++.+|
T Consensus 251 ~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~ 330 (938)
T KOG1077|consen 251 FVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRA 330 (938)
T ss_pred cCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999965 355555678889999988664 457889999999999999999999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhCh--hHHHHhHHhhccccC-CCchHHHHHHHHHhhcccCCCcHHHHHHHHH
Q 002083 315 ADVIARFLKSDSHNLKYMGIDALGRLIKTSP--EIAEQHQLAVIDCLE-DPDDTLKRKTFELLYKMTKSSNVEVIVDRMI 391 (969)
Q Consensus 315 i~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P--~l~~~h~~~I~~cL~-D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl 391 (969)
++.|+.||.++++|+||++|+.+.+|+...+ +.+..|+..|+..|+ ++|.+||++++||||.||+.+|++.||.||+
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elL 410 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELL 410 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 9999999999999999999999999997754 678999999999999 9999999999999999999999999999999
Q ss_pred HHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHH
Q 002083 392 DYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAV 471 (969)
Q Consensus 392 ~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av 471 (969)
.|+.. .|..+|+|++.+++.|||||++|..||+|+++++++++||+++++||+++++++.+ .++++.+|.
T Consensus 411 qYL~t-Ad~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvN---------nedlq~yaa 480 (938)
T KOG1077|consen 411 QYLET-ADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVN---------NEDLQGYAA 480 (938)
T ss_pred HHHhh-cchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEec---------chhhhHHHH
Confidence 99986 79999999999999999999999999999999999999999999999999998764 378999999
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHhccccCCCC---CCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcccc
Q 002083 472 ESYLRIIGEPKLPSVFLQVICWVLGEYGTADG---KVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRK 548 (969)
Q Consensus 472 ~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~---~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~ 548 (969)
.++.++|+.+..+|.++++..||+||||+++. ..++......|..-+ +..+..+|..+|+...|++-..|
T Consensus 481 k~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~--~~~s~~tr~lLLtTyiKl~nl~P----- 553 (938)
T KOG1077|consen 481 KRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKL--HLCSPVTRALLLTTYIKLINLFP----- 553 (938)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHh--ccCChhHHHHHHHHHHHHHhhCh-----
Confidence 99999999999999999999999999999742 344443333332222 35678899999999999987643
Q ss_pred CCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHhcCC
Q 002083 549 VDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLD 584 (969)
Q Consensus 549 ~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~ 584 (969)
++.+.++.+|+.+.+..|.|+||||+||++|.++.
T Consensus 554 -Ei~~~v~~vFq~~~n~~D~ElQqRa~EYLql~k~a 588 (938)
T KOG1077|consen 554 -EIKSNVQKVFQLYSNLIDVELQQRAVEYLQLSKLA 588 (938)
T ss_pred -hhhHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhc
Confidence 45677889999999999999999999999999987
No 3
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-86 Score=752.63 Aligned_cols=586 Identities=22% Similarity=0.401 Sum_probs=514.3
Q ss_pred CCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCC
Q 002083 7 FGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDN 86 (969)
Q Consensus 7 ~~~sk~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~ 86 (969)
++|.|++.||||+||.+. ++|+++|.+.+.+||+++++++++.+. .+++|+.|+.|+|+|++|+-||++++|++..
T Consensus 10 ~~f~ksl~dlikgir~~~--~~e~~fis~~l~e~r~E~k~~d~~~k~--~a~~kl~yl~mlg~d~swa~f~iveVmsssk 85 (877)
T KOG1059|consen 10 RFFEKSLKDLIKGIRSHK--EDEEKFISQCLEEIRQELKSDDLNVKS--NAVLKLTYLEMLGVDMSWAAFHIVEVMSSSK 85 (877)
T ss_pred HHHHHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHhhchhhhhhH--HHHHHHHHHHHHcchHHHHhhhhhhhhhhhh
Confidence 678999999999999985 577889999999999999999987643 8999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHH
Q 002083 87 LVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAI 166 (969)
Q Consensus 87 ~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~ 166 (969)
+..||+||+++++.|++++|+++|++|+++|||+|+|.+..++||..||.+++|++++++.++|..+|+|+.|||||||+
T Consensus 86 ~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAI 165 (877)
T KOG1059|consen 86 FQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAI 165 (877)
T ss_pred hHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCC
Q 002083 167 MALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMP 246 (969)
Q Consensus 167 lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~ 246 (969)
+.+||+|.+|||.++..+++|.+.|.|.||+|++||++++||+.+.||++|.+|.|-|+.+|-.. .
T Consensus 166 l~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttS--------------s 231 (877)
T KOG1059|consen 166 LLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTS--------------S 231 (877)
T ss_pred HHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhcc--------------C
Confidence 99999999999999999999999999999999999999999999999999999999999998653 5
Q ss_pred ChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhc-----C-CCHHHHHHHHHHHHH
Q 002083 247 APFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSI-----Y-ANPKLIESAADVIAR 320 (969)
Q Consensus 247 ~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l-----~-~~~~ll~~ai~~L~~ 320 (969)
++|+.|||||+|+.+.+.+|+.-+++.+.|.++++++. +.+++||||+|++.. . .+...+++|+..|..
T Consensus 232 NNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~-----AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~ 306 (877)
T KOG1059|consen 232 NNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTV-----AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRI 306 (877)
T ss_pred CCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhH-----HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999763 458999999999865 2 345678899999999
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCCh
Q 002083 321 FLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDN 400 (969)
Q Consensus 321 fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~ 400 (969)
|+.+.|+|+||+||.++.+|++.||.+++.|...|+.||+|.|++||.+||+||++|++++|+..||+.|+.|+....+.
T Consensus 307 fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t 386 (877)
T KOG1059|consen 307 FIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGT 386 (877)
T ss_pred hhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986666
Q ss_pred hhHHHHHHHHHHHhhh----cCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHH
Q 002083 401 HYKTEIASRCVELAEQ----FAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLR 476 (969)
Q Consensus 401 ~~k~eli~~I~~laek----yap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~ 476 (969)
+||.+++.+|+.+|.+ |..+++||+.++.++..+.|-.-...+.++++++-. +.|.+|..+|..+..
T Consensus 387 ~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~i---------RV~~iR~fsV~~m~~ 457 (877)
T KOG1059|consen 387 NYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAI---------RVPSIRPFSVSQMSA 457 (877)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHhe---------echhhhHhHHHHHHH
Confidence 9999999999999975 567999999999999988875555566666666542 368999999999999
Q ss_pred HhCCC----------CCchhHHHHHHHHhccccCCCCCCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcc
Q 002083 477 IIGEP----------KLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAG 546 (969)
Q Consensus 477 lL~d~----------~~~e~l~~~i~WILGEY~~~~~~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~ 546 (969)
+|.++ ..++++ .+++||+|||+.... ++.++++.|..---. .-+..+++..++++.|+|+.+....
T Consensus 458 Ll~~~~~~~s~q~n~~l~eVL-~AaaWi~GEyse~ve--n~~~~leamlrpr~~-~lp~~iq~vyvqni~Klfc~~~~~~ 533 (877)
T KOG1059|consen 458 LLDDPLLAGSAQINSQLCEVL-YAAAWILGEYSEFVE--NPNDTLEAMLRPRSD-LLPGHIQAVYVQNIVKLFCSWCSQF 533 (877)
T ss_pred HHhchhhccchhhccchhHHH-HHHHHHHHHHHHHhh--CHHHHHHHHhcCccc-cCchHHHHHHHHHHHHHHHHHHhhc
Confidence 99854 245654 577999999998643 355666665432111 2356789999999999999886543
Q ss_pred cc-CCC------cHHHHHHHHHHhcCCChhHHhHHHHHHHHhcCCHHHHHhhCCCCCCCcccc-ccccccchhHHHHHHH
Q 002083 547 RK-VDM------LPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIE-IDKNLSFLNGYVEQAL 618 (969)
Q Consensus 547 ~~-~~~------~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~~e~l~~vlP~d~s~ed~~-~d~~lsfl~~~v~~~l 618 (969)
+. .++ ...+..+|+.+..+.|.|||+||.+++.|++.-.+.+..-.+. .+.+ ....++||.+.+++||
T Consensus 534 ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~~i~~~~~~~~~~----~~m~~~~~~~~~lf~~EL~PV 609 (877)
T KOG1059|consen 534 EETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIRLIREALAEDTDG----QPMELSEVEMSLLFAGELNPV 609 (877)
T ss_pred CcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHhhcccc----hhhhhHHHHHHHHhccccCcc
Confidence 22 121 2446678888889999999999999999988766655442221 1111 1456799999999999
Q ss_pred hcCCCCCCCCcccc
Q 002083 619 EKGAQPYIPENERS 632 (969)
Q Consensus 619 ~~Ga~~y~p~~~~~ 632 (969)
+.+||..+|.|+.-
T Consensus 610 A~kAQrKV~vpdgL 623 (877)
T KOG1059|consen 610 APKAQRKVPVPDGL 623 (877)
T ss_pred chhhcccCCCCCCc
Confidence 99999999999863
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=3.7e-75 Score=702.44 Aligned_cols=513 Identities=17% Similarity=0.240 Sum_probs=427.1
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHH
Q 002083 34 LNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVN 113 (969)
Q Consensus 34 ~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iN 113 (969)
+.|+++||+.|++.+ .+++|++|.|+|+++++|+|++++|++||++++++|+++||+||||+..|++.++|+++|+||
T Consensus 31 kge~~ELr~~L~s~~--~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaIN 108 (746)
T PTZ00429 31 RGEGAELQNDLNGTD--SYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVN 108 (746)
T ss_pred cchHHHHHHHHHCCC--HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHH
Confidence 569999999998775 356689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh--hHHHHHHHhh
Q 002083 114 TIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ--HLVSNFRKRL 191 (969)
Q Consensus 114 tLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~--~l~~~l~~lL 191 (969)
+|+|||+|+||++||+|||+||+|+.+++++++...|+++|.|++|||||+|++|++|+|+.+|+.+. .|++.+.++|
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL 188 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELL 188 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 5899999999
Q ss_pred cCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh
Q 002083 192 CDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN 271 (969)
Q Consensus 192 ~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~ 271 (969)
.|+|++|+++|+++|+++...+++.+....+.+.+++..+.+ .+||+|+.||++|..|.+.+......
T Consensus 189 ~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e------------~~EW~Qi~IL~lL~~y~P~~~~e~~~ 256 (746)
T PTZ00429 189 NDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPE------------CNEWGQLYILELLAAQRPSDKESAET 256 (746)
T ss_pred cCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhc------------CChHHHHHHHHHHHhcCCCCcHHHHH
Confidence 999999999999999999887776554334444444444321 38999999999999999877666555
Q ss_pred hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCC--HHHHHHHHH----HHHHHhcCCChhHHHHHHHHHHHHHhhCh
Q 002083 272 MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYAN--PKLIESAAD----VIARFLKSDSHNLKYMGIDALGRLIKTSP 345 (969)
Q Consensus 272 l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~--~~ll~~ai~----~L~~fL~s~d~NlrYvaL~~L~~I~~~~P 345 (969)
+++.+...|++ .| .||+++|+++++++.+. +++++.+.. ++..+ .++++|+||++|++|..|++.+|
T Consensus 257 il~~l~~~Lq~----~N--~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 257 LLTRVLPRMSH----QN--PAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred HHHHHHHHhcC----CC--HHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH
Confidence 55555555553 34 59999999999988753 566666554 34444 56789999999999999999999
Q ss_pred hHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHH
Q 002083 346 EIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFI 425 (969)
Q Consensus 346 ~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~I 425 (969)
.+|..|...||.+++|| .+||++||++|+.|+|++|+..|++||.+|+.+ .|.+|++++|++|+.||.||+...+||+
T Consensus 330 ~lf~~~~~~Ff~~~~Dp-~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d-~D~ef~r~aIrAIg~lA~k~~~~a~~cV 407 (746)
T PTZ00429 330 NLLRTNLDSFYVRYSDP-PFVKLEKLRLLLKLVTPSVAPEILKELAEYASG-VDMVFVVEVVRAIASLAIKVDSVAPDCA 407 (746)
T ss_pred HHHHHHHHhhhcccCCc-HHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 99999977777777777 579999999999999999999999999999987 5889999999999999999999999999
Q ss_pred HHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHh--CCCCCchhHHHHHHHHhccccCCCC
Q 002083 426 QTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRII--GEPKLPSVFLQVICWVLGEYGTADG 503 (969)
Q Consensus 426 d~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL--~d~~~~e~l~~~i~WILGEY~~~~~ 503 (969)
++|+++++..++++. +++..+.+++. .+|+. +++..+++.+ ++...++ .+.+++||+|||++.++
T Consensus 408 ~~Ll~ll~~~~~~v~-e~i~vik~Ilr---------kyP~~--~il~~L~~~~~~~~i~e~~-AKaaiiWILGEy~~~I~ 474 (746)
T PTZ00429 408 NLLLQIVDRRPELLP-QVVTAAKDIVR---------KYPEL--LMLDTLVTDYGADEVVEEE-AKVSLLWMLGEYCDFIE 474 (746)
T ss_pred HHHHHHhcCCchhHH-HHHHHHHHHHH---------HCccH--HHHHHHHHhhcccccccHH-HHHHHHHHHHhhHhhHh
Confidence 999999988777665 34443444433 36764 3566666654 3334454 47788999999998653
Q ss_pred CCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHh-cCCChhHHhHHHHHHHHhc
Q 002083 504 KVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELS-ASHSTDLQQRAYELEAVTG 582 (969)
Q Consensus 504 ~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l-~s~d~EVQqRA~Ey~~LL~ 582 (969)
+++++++.+++.|. .++..||.++|+|++|+|++.+. +..+.+..+|+.+. .+.|+||||||++||+||+
T Consensus 475 --~a~~~L~~~i~~f~--~E~~~VqlqlLta~vKlfl~~p~-----~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 475 --NGKDIIQRFIDTIM--EHEQRVQLAILSAAVKMFLRDPQ-----GMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred --hHHHHHHHHHhhhc--cCCHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHc
Confidence 46788887776553 57889999999999999998642 12234566666554 3678999999999999999
Q ss_pred CCH--HHHHhh
Q 002083 583 LDA--YAVEII 591 (969)
Q Consensus 583 ~~~--e~l~~v 591 (969)
.+. +.++.|
T Consensus 546 ~~~~~~~a~~i 556 (746)
T PTZ00429 546 KGITVAQMKKV 556 (746)
T ss_pred CCCcHHHHHHH
Confidence 874 434555
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=1.3e-75 Score=692.44 Aligned_cols=517 Identities=28% Similarity=0.524 Sum_probs=456.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHH
Q 002083 29 EDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLI 108 (969)
Q Consensus 29 E~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dll 108 (969)
|++++.+|+++++++++ .+.+++++++.|++|++|+|+|++|+|++|+++++++|+..||+||||++.+++.++|++
T Consensus 1 ~~~~~~~el~~~~~~~~---~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~ 77 (526)
T PF01602_consen 1 ERKRISQELAKILNSFK---IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL 77 (526)
T ss_dssp HHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH
T ss_pred CcchHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH
Confidence 78889999999999988 566778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhh-HHHHH
Q 002083 109 ILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQH-LVSNF 187 (969)
Q Consensus 109 lL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~-l~~~l 187 (969)
+|++|+|+|||+|+||++||+|||+||+++++++++.+.+.|.+++.|++|||||+|++|++|+|+.+|+.+++ +++.+
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l 157 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKL 157 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988 79999
Q ss_pred HHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH
Q 002083 188 RKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ 267 (969)
Q Consensus 188 ~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~ 267 (969)
.++|.|.|++|+.+|+.++.++ +.+++.+..+++.+++.|.+++ +.++||+|++++++|..|++.++.
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l-----------~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLL-----------SDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHH-----------TCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred hhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcc-----------cccchHHHHHHHHHHHhcccCChh
Confidence 9999999999999999999998 5566666678888889888876 358999999999999999998887
Q ss_pred HH--hhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh
Q 002083 268 AS--ENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP 345 (969)
Q Consensus 268 ~s--e~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P 345 (969)
.. ..+.+.+...++.. +.+|+|||++++..+.+++.++..+++.|.+|+.++++|+||++|+.|..|+..+|
T Consensus 226 ~~~~~~~i~~l~~~l~s~------~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 226 DADKNRIIEPLLNLLQSS------SPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred hhhHHHHHHHHHHHhhcc------ccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 77 66778888877733 47999999999999999988999999999999999999999999999999999996
Q ss_pred hHHHHhHHhhccccC-CCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHH
Q 002083 346 EIAEQHQLAVIDCLE-DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWF 424 (969)
Q Consensus 346 ~l~~~h~~~I~~cL~-D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~ 424 (969)
..+. +...++.|+. |+|.+||++||++|+.++|++|++.|+++|++|+.+..|.+++++++.+|+.+|++|+++.+||
T Consensus 300 ~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~ 378 (526)
T PF01602_consen 300 PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWY 378 (526)
T ss_dssp HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHH
T ss_pred hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHH
Confidence 6665 4444444555 8899999999999999999999999999999999776788999999999999999999999999
Q ss_pred HHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCC
Q 002083 425 IQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGK 504 (969)
Q Consensus 425 Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~ 504 (969)
++++++++..+|+++..+++..+.+++.. +|+.+..++..+++++.+...++ ++++++|++|||++....
T Consensus 379 v~~l~~ll~~~~~~~~~~~~~~i~~ll~~---------~~~~~~~~l~~L~~~l~~~~~~~-~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 379 VDTLLKLLEISGDYVSNEIINVIRDLLSN---------NPELREKILKKLIELLEDISSPE-ALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHHCTGGGCHCHHHHHHHHHHHH---------STTTHHHHHHHHHHHHTSSSSHH-HHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHhhhhccccccchHHHHHHHHhhc---------ChhhhHHHHHHHHHHHHHhhHHH-HHHHHHhhhcccCCcccc
Confidence 99999999999999999999999988863 57889999999999999977776 478999999999986431
Q ss_pred -CChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhc--CCChhHHhHHHHHHHHh
Q 002083 505 -VSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSA--SHSTDLQQRAYELEAVT 581 (969)
Q Consensus 505 -~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~--s~d~EVQqRA~Ey~~LL 581 (969)
..+.++++.+.+.+. .++..||.++|+|++|++.+.+. .+..+.+..++..+.. +.|+||||||+||++||
T Consensus 449 ~~~~~~~~~~l~~~~~--~~~~~vk~~ilt~~~Kl~~~~~~----~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 449 TESAPDILRSLIENFI--EESPEVKLQILTALAKLFKRNPE----NEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp TTHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHSCS----TTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhc--cccHHHHHHHHHHHHHHHhhCCc----hhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 136677777776653 56788999999999999987542 1234578888888888 89999999999999999
Q ss_pred cC
Q 002083 582 GL 583 (969)
Q Consensus 582 ~~ 583 (969)
+.
T Consensus 523 ~~ 524 (526)
T PF01602_consen 523 NS 524 (526)
T ss_dssp HH
T ss_pred cc
Confidence 75
No 6
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-64 Score=577.40 Aligned_cols=555 Identities=19% Similarity=0.254 Sum_probs=461.3
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHh
Q 002083 38 ETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQK 117 (969)
Q Consensus 38 aeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqK 117 (969)
+.|++.+.+.+-. .+.++|.|+|.+++.|.|+|-+|++|||+++++|.+.||++|+|+.+|+++++|+++|.||++||
T Consensus 38 ~dL~~lLdSnkd~--~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk 115 (968)
T KOG1060|consen 38 DDLKQLLDSNKDS--LKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQK 115 (968)
T ss_pred HHHHHHHhccccH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHh
Confidence 4577777765433 34599999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChh
Q 002083 118 DLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPG 197 (969)
Q Consensus 118 DL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~ 197 (969)
+|.|+|+++||.|||+|++|+.+.+++.++-.|+++.+|++|||||.|++|+.|+|..+|+.-.++++.+.++|.|++|.
T Consensus 116 ~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~spl 195 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPL 195 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC---ChHH------
Q 002083 198 VMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG---DKQA------ 268 (969)
Q Consensus 198 Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~---d~~~------ 268 (969)
|+++|+.+|-++|+++.+..++.+.+++++|.++ ++|+|+.+|.+|.+|++. +|..
T Consensus 196 VvgsAv~AF~evCPerldLIHknyrklC~ll~dv---------------deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e 260 (968)
T KOG1060|consen 196 VVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV---------------DEWGQVVLINMLTRYARHQLPDPTVVDSSLE 260 (968)
T ss_pred chhHHHHHHHHhchhHHHHhhHHHHHHHhhccch---------------hhhhHHHHHHHHHHHHHhcCCCccccccccc
Confidence 9999999999999999888888888899999887 789999999999999763 1200
Q ss_pred -----------------HhhhHHHHHHhHhcc---CCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChh
Q 002083 269 -----------------SENMYTVVGDIFRKC---DSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHN 328 (969)
Q Consensus 269 -----------------se~l~~iL~~iL~~~---~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~N 328 (969)
.-.+..-+..+|+.+ -.++|. +|++.|+++++++.|..+. ...++.|.++|.++ ++
T Consensus 261 ~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~--sVVmA~aql~y~lAP~~~~-~~i~kaLvrLLrs~-~~ 336 (968)
T KOG1060|consen 261 DNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP--SVVMAVAQLFYHLAPKNQV-TKIAKALVRLLRSN-RE 336 (968)
T ss_pred cCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc--HHHHHHHhHHHhhCCHHHH-HHHHHHHHHHHhcC-Cc
Confidence 000111233333333 246674 9999999999999986544 44689999999865 89
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHH
Q 002083 329 LKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIAS 408 (969)
Q Consensus 329 lrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~ 408 (969)
+||++|++|..|+...|.+|.+|...||.|-.|| ..+|..+|++|..++|+.|+..|+.||..|+.. .|..|....|.
T Consensus 337 vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp-~~vk~lKleiLs~La~esni~~ILrE~q~YI~s-~d~~faa~aV~ 414 (968)
T KOG1060|consen 337 VQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDP-TQVKILKLEILSNLANESNISEILRELQTYIKS-SDRSFAAAAVK 414 (968)
T ss_pred chhhhHHHHHHHHhcchhhhhhhhhceEeecCCH-HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc-CchhHHHHHHH
Confidence 9999999999999999999999999999999998 689999999999999999999999999999986 57689999999
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHH
Q 002083 409 RCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFL 488 (969)
Q Consensus 409 ~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~ 488 (969)
+|+++|.+...-..-|++.|+.+++.....|-.+.+..+-++| +.+|..+..++.+|.++++....|. ++
T Consensus 415 AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll---------q~~p~~h~~ii~~La~lldti~vp~-AR 484 (968)
T KOG1060|consen 415 AIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL---------QKDPAEHLEILFQLARLLDTILVPA-AR 484 (968)
T ss_pred HHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH---------hhChHHHHHHHHHHHHHhhhhhhhh-hh
Confidence 9999999987777889999999998776666555444333333 4579899999999999998877775 48
Q ss_pred HHHHHHhccccCCCCCCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhcCCCh
Q 002083 489 QVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHST 568 (969)
Q Consensus 489 ~~i~WILGEY~~~~~~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~s~d~ 568 (969)
++++|++|||+...... ++++++++.+.|. .|.++||.+||...+|+|..... +..--++-.|+-.-.+.++
T Consensus 485 A~IiWLige~~e~vpri-~PDVLR~laksFs--~E~~evKlQILnL~aKLyl~~~~-----~~kll~~Yv~~L~~yD~sY 556 (968)
T KOG1060|consen 485 AGIIWLIGEYCEIVPRI-APDVLRKLAKSFS--DEGDEVKLQILNLSAKLYLTNID-----QTKLLVQYVFELARYDLSY 556 (968)
T ss_pred ceeeeeehhhhhhcchh-chHHHHHHHHhhc--cccchhhHHHHHhhhhheEechh-----hHHHHHHHHHHHhccCCCc
Confidence 89999999999976654 5689999988775 67889999999999999986431 1111233344433346679
Q ss_pred hHHhHHHHHHHHhcCCH---HHHHhh--CCCCCCCccccccccccchhHHHHHHHhcCCCCCCCCcccccc
Q 002083 569 DLQQRAYELEAVTGLDA---YAVEII--MPADASCEDIEIDKNLSFLNGYVEQALEKGAQPYIPENERSGM 634 (969)
Q Consensus 569 EVQqRA~Ey~~LL~~~~---e~l~~v--lP~d~s~ed~~~d~~lsfl~~~v~~~l~~Ga~~y~p~~~~~~~ 634 (969)
|+||||+++..|+.... +-+..+ ..++++.-++..+.. -|.-|....-+.+-|.+|.|+|.|...
T Consensus 557 DiRDRaRF~r~l~~~~~~Ls~h~~ei~l~~Kpa~~~es~f~~~-~~~~gslS~lLn~~a~GY~~lp~~~~~ 626 (968)
T KOG1060|consen 557 DIRDRARFLRQLISPLEALSKHAREIFLASKPAPVLESSFKDR-HYQLGSLSLLLNAPAPGYEPLPNWPAV 626 (968)
T ss_pred chhHHHHHHHHHhccHHHHHHHHHHHhhccCCCccCcccccCC-CcccchHHHHhcCcCcCCccCCCcccc
Confidence 99999999999987543 112222 244444434444444 567788888899999999999999653
No 7
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-58 Score=532.64 Aligned_cols=548 Identities=19% Similarity=0.255 Sum_probs=451.4
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHH
Q 002083 34 LNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVN 113 (969)
Q Consensus 34 ~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iN 113 (969)
..|+.++|+.+.+... +++|+++.|+|.-|..|.|+|..|++|||.+++.|++.||++|||+..|+...|+++++++|
T Consensus 12 k~ei~elks~l~s~~~--~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avn 89 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSK--EKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVN 89 (734)
T ss_pred hhhchHHHHHhhhhhh--hhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhh
Confidence 5688999999954332 56779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh--hHHHHHHHhh
Q 002083 114 TIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ--HLVSNFRKRL 191 (969)
Q Consensus 114 tLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~--~l~~~l~~lL 191 (969)
++.||+.++||++|++|+|+|+.++.+.+.+++...+.++++|..|||||+|+.|+.|+|+.+++.+. .+++.+..++
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll 169 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLL 169 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999886 4899999999
Q ss_pred cCCChhHHHHHHHHHHHhhhhCch-----hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCCh
Q 002083 192 CDNDPGVMGATLCPLFDLITVDVN-----SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDK 266 (969)
Q Consensus 192 ~D~D~~Vv~aAl~~L~ei~~~~p~-----~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~ 266 (969)
.|.||.|+++|+.+|.+|...+++ ....++..+++.|..+ ++|.|+-+|+.+..|.+.|.
T Consensus 170 ~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec---------------~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 170 SDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC---------------TEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred cCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh---------------hhhhHHHHHHHHHhcCCCCc
Confidence 999999999999999999887763 2234445555555543 78999999999999999888
Q ss_pred HHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC---C--HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002083 267 QASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA---N--PKLIESAADVIARFLKSDSHNLKYMGIDALGRLI 341 (969)
Q Consensus 267 ~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~---~--~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~ 341 (969)
.+.+.+.+.+...|+++ | .+|++.+++.+++... + ..+.+....++..++.+.. +++|++|+++..|.
T Consensus 235 ~ea~~i~~r~~p~Lqh~----n--~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 235 REAEDICERLTPRLQHA----N--SAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLIL 307 (734)
T ss_pred hhHHHHHHHhhhhhccC----C--cceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence 77777777777777754 3 4899999999987532 1 3455566677777887765 99999999999999
Q ss_pred hhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCch
Q 002083 342 KTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSN 421 (969)
Q Consensus 342 ~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~ 421 (969)
+..|+++..+...||.-.+|| .|||..+|+++..++|.+|+.+|+.||.+|..+ .|.+|.++.|++|+.+|.++...
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDP-iYvK~eKleil~~la~~~nl~qvl~El~eYate-vD~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDP-IYVKLEKLEILIELANDANLAQVLAELKEYATE-VDVDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred HhChHHHHhHhHeeeeecCCc-hhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhh-hCHHHHHHHHHHhhhhhhhhhhh-
Confidence 999998888777666666776 999999999999999999999999999999998 58899999999999999997655
Q ss_pred HHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCC
Q 002083 422 HWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTA 501 (969)
Q Consensus 422 ~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~ 501 (969)
+-||++++++++...+|+.++++..+.+++ +.+|+..+.++..++..++.-..|+ ++.+++||+|||++.
T Consensus 385 ~~cv~~lLell~~~~~yvvqE~~vvi~dil---------RkyP~~~~~vv~~l~~~~~sl~epe-ak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 385 NDCVSILLELLETKVDYVVQEAIVVIRDIL---------RKYPNKYESVVAILCENLDSLQEPE-AKAALIWILGEYAER 454 (734)
T ss_pred hhhHHHHHHHHhhcccceeeehhHHHHhhh---------hcCCCchhhhhhhhcccccccCChH-HHHHHHHHHhhhhhc
Confidence 669999999999999999888665444433 3578888888888888777666676 488999999999987
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHh----c-CCChhHHhHHHH
Q 002083 502 DGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELS----A-SHSTDLQQRAYE 576 (969)
Q Consensus 502 ~~~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l----~-s~d~EVQqRA~E 576 (969)
++ ++.++++.+++.+. .|+..||..+|||++|+|.+.+ ++++++++..+ . +.++|+|||+..
T Consensus 455 i~--~a~elL~~f~en~~--dE~~~Vql~LLta~ik~Fl~~p---------~~tq~~l~~vL~~~~~d~~~~dlrDr~l~ 521 (734)
T KOG1061|consen 455 IE--NALELLESFLENFK--DETAEVQLELLTAAIKLFLKKP---------TETQELLQGVLPLATADTDNPDLRDRGLI 521 (734)
T ss_pred cC--cHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHhcCC---------ccHHHHHHHHHhhhhccccChhhhhhHHH
Confidence 54 56788888877653 6788999999999999998754 24455555554 3 567999999999
Q ss_pred HHHHhcCCHHHHHhhCCCCCCCccccccccccchhHHHHHHHhcCCCCCCCCccc
Q 002083 577 LEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALEKGAQPYIPENER 631 (969)
Q Consensus 577 y~~LL~~~~e~l~~vlP~d~s~ed~~~d~~lsfl~~~v~~~l~~Ga~~y~p~~~~ 631 (969)
||++|+.++..++.+...+.+......+..-.++.+-...-+..=+.-|.-++..
T Consensus 522 Y~RlLs~~~~~a~~v~~~~kP~is~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~ 576 (734)
T KOG1061|consen 522 YWRLLSEDPLIAKDVVLAEKPLISEETDSLDPTLLEELLCDIGTLSSVYHKPPSA 576 (734)
T ss_pred HHHHhhcCHHHHHHHHhcCCCccccCCCCCCchHHHHHHHhhccccceeecChHH
Confidence 9999999988887765433322222233333333333333343445566655554
No 8
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=5e-44 Score=424.15 Aligned_cols=521 Identities=16% Similarity=0.205 Sum_probs=397.9
Q ss_pred HHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHH
Q 002083 36 EIETLKRR-ISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNT 114 (969)
Q Consensus 36 ElaeiR~~-f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNt 114 (969)
++++.|.. +.+.+. ++++++|.|+|..|+.|+||+.+|+||||.+.+.|.++||+.|+|+.+|+.-+|++++|++|+
T Consensus 19 ~~~~~~sg~l~s~n~--~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNt 96 (757)
T COG5096 19 SVAALSSGRLESSND--YKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNT 96 (757)
T ss_pred HHhhhccccccccCh--HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 45666655 555443 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhh--HHHHHHHhhc
Q 002083 115 IQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQH--LVSNFRKRLC 192 (969)
Q Consensus 115 LqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~--l~~~l~~lL~ 192 (969)
++||++|+||++||+|||+||.++.++++..+++.|+++++|+++||||+|++|+.++|+.+++.+.+ +...+..++.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~ 176 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVA 176 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 4666777889
Q ss_pred CCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhh
Q 002083 193 DNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENM 272 (969)
Q Consensus 193 D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l 272 (969)
|.||-|+.+|+..|.++..++. +++...++..+.++. ...+ ....+|.++.++..|..+.+.++...+.+
T Consensus 177 D~dP~Vi~nAl~sl~~i~~e~a---~~~~~~~~~~i~~l~----~~~~---~~~~~~~~~~~le~L~~~~~~~~~s~~~~ 246 (757)
T COG5096 177 DSDPIVIANALASLAEIDPELA---HGYSLEVILRIPQLD----LLSL---SVSTEWLLLIILEVLTERVPTTPDSAEDF 246 (757)
T ss_pred CCCchHHHHHHHHHHHhchhhh---hhHHHHHHHHhhhcc----chhh---hhhHHHHHHHHHHHHHccCCCCCCcHHHH
Confidence 9999999999999999876522 333333334433321 0000 01248999999999999888777655555
Q ss_pred HHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHH
Q 002083 273 YTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY---ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAE 349 (969)
Q Consensus 273 ~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~---~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~ 349 (969)
.+.+...++ ..| ..|+.-+++.++.+. +...+......+|..++..+...+.|+.......+....|+++.
T Consensus 247 ~~~~~~~~~----~~n--~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~ 320 (757)
T COG5096 247 EERLSPPLQ----HNN--AEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLD 320 (757)
T ss_pred HHhccchhh----hCc--HHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHH
Confidence 554444444 234 368888888887653 22335555667788887766578899988888888888888874
Q ss_pred HhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhh-cCChhhHHHHHHHHHHHhhhcCCchHHHHHHH
Q 002083 350 QHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMIS-INDNHYKTEIASRCVELAEQFAPSNHWFIQTM 428 (969)
Q Consensus 350 ~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~-~~D~~~k~eli~~I~~laekyap~~~W~Id~L 428 (969)
+...++.|-.+.|.+++.+++++++.+.+.+|...++.|++.|+.. .-|.++.+++++.|+.++.+.+....-||+.+
T Consensus 321 -~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~ 399 (757)
T COG5096 321 -KVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISEL 399 (757)
T ss_pred -HHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 4677888888888999999999999999999999999999999986 34789999999999999999877778899999
Q ss_pred HHHHh---hhCccchHHH-----HHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCC-CCCchhHHHHH-----HHH
Q 002083 429 NKVFE---HAGDLVNIKV-----AHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGE-PKLPSVFLQVI-----CWV 494 (969)
Q Consensus 429 ~~ll~---~~gd~v~~ev-----~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d-~~~~e~l~~~i-----~WI 494 (969)
+.+++ ..|+|+..++ |. +++.-...++ -..+.++......+..+.+.++- .+.|. .+.++ +|+
T Consensus 400 lel~~g~~~~~~Yi~~e~~~~~~i~-v~r~~~~~lr-~l~~~~~~~~~~~l~~~~e~l~~~~~~P~-~k~~~~~~~~~wl 476 (757)
T COG5096 400 LELLEGVWIRGSYIVQEVRIVDCIS-VIRISVLVLR-ILPNEYPKILLRGLYALEETLELQSREPR-AKSVTDKYLGAWL 476 (757)
T ss_pred HHhccchhhccchhhhhhcccceee-eeehhcchhh-hcCCcchhhhHHHHHHHHHHhhccccCcH-HHHHHhhhhHHHh
Confidence 99999 8888887664 21 1110000000 01112356666666667777761 11233 24455 999
Q ss_pred hccccCCCCCCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcccc-CCCcHHHHHHHHHHhc-CCChhHHh
Q 002083 495 LGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRK-VDMLPECQSLIEELSA-SHSTDLQQ 572 (969)
Q Consensus 495 LGEY~~~~~~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~-~~~~~~~~~lL~~~l~-s~d~EVQq 572 (969)
+|||++...+.. +.+++.++.. +..|+..||.+|+++..|+++..+..... .+ +-.+.++..+.. ..++|+||
T Consensus 477 ~ge~~~~i~r~~-~~~l~~~~~~--~~~E~levq~~Il~~svkl~~~~~~~~~~~~~--~~d~~v~~~~~~~v~~~DlRD 551 (757)
T COG5096 477 LGEFSDIIPRLE-PELLRIAISN--FVDETLEVQYTILMSSVKLIANSIRKAKQCNS--ELDQDVLRRCFDYVLVPDLRD 551 (757)
T ss_pred HHHHHHHHhhhh-HHHHHHHHHH--hcccchHHHHHHHHHHHHHHHhCcHhhhhccc--hhccHHHHHHHhccCChhHHH
Confidence 999998654332 3445544443 35788999999999999999986532110 01 223466666665 45799999
Q ss_pred HHHHHHHHhcC
Q 002083 573 RAYELEAVTGL 583 (969)
Q Consensus 573 RA~Ey~~LL~~ 583 (969)
||.+|++++..
T Consensus 552 ra~my~~~lst 562 (757)
T COG5096 552 RARMYSRLLST 562 (757)
T ss_pred HHHHHHHHhcC
Confidence 99999999983
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-41 Score=387.75 Aligned_cols=428 Identities=20% Similarity=0.326 Sum_probs=361.2
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHH-hhcCCCcchhHHHHHHHHhhhccCc-----hHHHHH
Q 002083 38 ETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVK-MTHDDNLVLKRTGYLAVTLFLNEDH-----DLIILI 111 (969)
Q Consensus 38 aeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIk-l~sS~~~~~KRlgYLals~~~~~~~-----dlllL~ 111 (969)
.+||+.|.+.+. +.+-++|.|+|+++..|.+++..+++||+ .+-+.+..+||+-|+|+.+.-..++ +.++|+
T Consensus 23 ~~ik~~Lek~~~--~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILv 100 (948)
T KOG1058|consen 23 DEIKEKLEKGDD--EVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILV 100 (948)
T ss_pred HHHHHHHhcCCh--HHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHH
Confidence 367888887665 34459999999999999999999999998 6689999999999999999987766 368999
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHh-
Q 002083 112 VNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKR- 190 (969)
Q Consensus 112 iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~l- 190 (969)
+|.++|||+|||+++||..||+||++..+|+++.++|.|..||.|.++||||.|++|++.||+..-+++++.-+.+...
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL 180 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFL 180 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999766666554555543
Q ss_pred hcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHh
Q 002083 191 LCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASE 270 (969)
Q Consensus 191 L~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se 270 (969)
+.+.||++..+|+..|+..-+++.-.| +.+...++ | .-++-+|..|+.++..-+..+|....
T Consensus 181 ~~e~DpsCkRNAFi~L~~~D~ErAl~Y------l~~~idqi-----~-------~~~~~LqlViVE~Irkv~~~~p~~~~ 242 (948)
T KOG1058|consen 181 LTEQDPSCKRNAFLMLFTTDPERALNY------LLSNIDQI-----P-------SFNDSLQLVIVELIRKVCLANPAEKA 242 (948)
T ss_pred HhccCchhHHHHHHHHHhcCHHHHHHH------HHhhHhhc-----c-------CccHHHHHHHHHHHHHHHhcCHHHhh
Confidence 578999999999988876543322122 22222232 1 12678999999999998888888877
Q ss_pred hhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhhChhHHH
Q 002083 271 NMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKS-DSHNLKYMGIDALGRLIKTSPEIAE 349 (969)
Q Consensus 271 ~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s-~d~NlrYvaL~~L~~I~~~~P~l~~ 349 (969)
..+.++..+|..+ +++|+|||+-++..+.++|.+++.+++++..++.. +|+|+|.+.|+.|..+...+..+++
T Consensus 243 ~~i~~i~~lL~st------ssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~ 316 (948)
T KOG1058|consen 243 RYIRCIYNLLSST------SSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ 316 (948)
T ss_pred HHHHHHHHHHhcC------CchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH
Confidence 8888888888854 25899999999999999999999999999998865 7899999999999999999999999
Q ss_pred HhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCC------hhhHHHHHHHHHHHhhhcCCchHH
Q 002083 350 QHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISIND------NHYKTEIASRCVELAEQFAPSNHW 423 (969)
Q Consensus 350 ~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D------~~~k~eli~~I~~laekyap~~~W 423 (969)
...+.|+..|+.||..+|+|+|++.+.++...|+++|+.-|.+-+.+..+ ..||..++++|..+|.+|+....-
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat 396 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT 396 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH
Confidence 99999999999999999999999999999999999999999887765433 369999999999999999988888
Q ss_pred HHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCC
Q 002083 424 FIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTA 501 (969)
Q Consensus 424 ~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~ 501 (969)
.|..+++.+.-... ..+..++..|++.+ +..|++|..++.++.+.+...+...+. +..+||+|||+..
T Consensus 397 vV~~ll~fisD~N~----~aas~vl~FvrE~i-----ek~p~Lr~~ii~~l~~~~~~irS~ki~-rgalwi~GeYce~ 464 (948)
T KOG1058|consen 397 VVSLLLDFISDSNE----AAASDVLMFVREAI-----EKFPNLRASIIEKLLETFPQIRSSKIC-RGALWILGEYCEG 464 (948)
T ss_pred HHHHHHHHhccCCH----HHHHHHHHHHHHHH-----HhCchHHHHHHHHHHHhhhhhcccccc-hhHHHHHHHHHhh
Confidence 88888887754333 33344444555432 568999999999999998887777765 4668999999964
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-38 Score=365.48 Aligned_cols=502 Identities=17% Similarity=0.291 Sum_probs=431.2
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCC-----CcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHH
Q 002083 37 IETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHD-----ASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILI 111 (969)
Q Consensus 37 laeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~D-----vsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~ 111 (969)
+++.| .|+++.++.++|+..+.||+|+...|.. +.-.||.+.|+++++|..+||++|+++..+.....| .+++
T Consensus 24 lqe~r-~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised-viiv 101 (865)
T KOG1078|consen 24 LQEAR-TFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED-VIIV 101 (865)
T ss_pred HHHHH-hhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-hhhh
Confidence 66678 8999999999999999999999999965 357899999999999999999999999998776555 6799
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhh
Q 002083 112 VNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRL 191 (969)
Q Consensus 112 iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL 191 (969)
++++.||.+..++.+|+.|||+||+|.+..|+..+...+++.+.++++.|+..|++.-++++....+.++.|.+.+.+..
T Consensus 102 tsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~ 181 (865)
T KOG1078|consen 102 TSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAV 181 (865)
T ss_pred hHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh
Q 002083 192 CDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN 271 (969)
Q Consensus 192 ~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~ 271 (969)
.+.|..|+.+|+.+|+.+-+++.-.. .++++. +.. +.+.+|+.++.++|+-..+...++.....
T Consensus 182 ~s~~~m~QyHalglLyqirk~drla~----sklv~~---~~~---------~~~~~~~A~~~lir~~~~~l~~~~~~~s~ 245 (865)
T KOG1078|consen 182 NSDNIMVQYHALGLLYQIRKNDRLAV----SKLVQK---FTR---------GSLKSPLAVCMLIRIASELLKENQQADSP 245 (865)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHH---Hcc---------ccccchhHHHHHHHHHHHHhhhcccchhh
Confidence 99999999999999998866543221 122221 111 34568999999999998877666554556
Q ss_pred hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH
Q 002083 272 MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA-NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ 350 (969)
Q Consensus 272 l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~-~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~ 350 (969)
+++.|..++++. +..|+||+++.|..+.. ++..+..++..|..||.+...-+||.+++.|++++..+|..+.-
T Consensus 246 ~~~fl~s~l~~K------~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHK------SEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhch------hHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 788888888854 35899999999998864 56777779999999999999999999999999999999999999
Q ss_pred hHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q 002083 351 HQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNK 430 (969)
Q Consensus 351 h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ 430 (969)
....+-.+..|.+.+|...|+..|++..+++|++.+++.+-.|+.+.+| +||.-++.+|..+|.+|+-...-++++|.+
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD-eFKivvvdai~sLc~~fp~k~~~~m~FL~~ 398 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD-EFKIVVVDAIRSLCLKFPRKHTVMMNFLSN 398 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc-cceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence 9899999999999999999999999999999999999999999999766 799999999999999999888888999999
Q ss_pred HHhhhCccch-HHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCCCChHH
Q 002083 431 VFEHAGDLVN-IKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASY 509 (969)
Q Consensus 431 ll~~~gd~v~-~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~~~~~ 509 (969)
+++..|.+-. ..++..++++|.+ .|+.++..+..++++|+|+.+++...+. ..++|.-|... ..|+.
T Consensus 399 ~Lr~eGg~e~K~aivd~Ii~iie~---------~pdsKe~~L~~LCefIEDce~~~i~~rI-LhlLG~EgP~a--~~Psk 466 (865)
T KOG1078|consen 399 MLREEGGFEFKRAIVDAIIDIIEE---------NPDSKERGLEHLCEFIEDCEFTQIAVRI-LHLLGKEGPKA--PNPSK 466 (865)
T ss_pred HHHhccCchHHHHHHHHHHHHHHh---------CcchhhHHHHHHHHHHHhccchHHHHHH-HHHHhccCCCC--CCcch
Confidence 9988777643 3466666666643 4888999999999999999999876654 78999988753 24455
Q ss_pred HHHHHHHHHhh-cCCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHhcCC
Q 002083 510 ITGKLCDVAEA-YSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLD 584 (969)
Q Consensus 510 Il~~L~~~~~~-~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~ 584 (969)
.+++. +++ ..++..||+..++|++|+.+.. ....+.+..+|.+++.+.|.||||||..|+..+...
T Consensus 467 yir~i---yNRviLEn~ivRaaAv~alaKfg~~~------~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 467 YIRFI---YNRVILENAIVRAAAVSALAKFGAQD------VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhHHH---hhhhhhhhhhhHHHHHHHHHHHhcCC------CCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 55654 333 3688899999999999997432 346678899999999999999999999999998843
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.7e-35 Score=329.99 Aligned_cols=506 Identities=14% Similarity=0.196 Sum_probs=422.3
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCC-----cchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHH
Q 002083 37 IETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDA-----SFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILI 111 (969)
Q Consensus 37 laeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dv-----sf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~ 111 (969)
.+++++.|++..++.+++|+.+-||.|+...|.-. .-.||.+.|+++++|..+|+.+|+++..+..-..| .+|.
T Consensus 24 ~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted-vlm~ 102 (898)
T COG5240 24 LQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED-VLMG 102 (898)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh-hhHH
Confidence 66789999999999999999999999999999854 46899999999999999999999999998776656 5799
Q ss_pred HHHHHhhhcCccH-HHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHh
Q 002083 112 VNTIQKDLKSDNY-LIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKR 190 (969)
Q Consensus 112 iNtLqKDL~s~N~-~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~l 190 (969)
||+|.||++...| .++.+|+|+|-+++..+++.++...+.....++++.+|..|+...|++|-.+-+.++.|.++..+.
T Consensus 103 tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qea 182 (898)
T COG5240 103 TSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEA 182 (898)
T ss_pred HHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHH
Confidence 9999999999877 999999999999999999999999999999999999999999999999988888888888887776
Q ss_pred hcC----------------CChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHH
Q 002083 191 LCD----------------NDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRL 254 (969)
Q Consensus 191 L~D----------------~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikL 254 (969)
.-| .++.-..+|+.+|+.+-+.+.-....++.+|..-+ .+.+...-+.+
T Consensus 183 v~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~---------------smknq~a~V~l 247 (898)
T COG5240 183 VLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNA---------------SMKNQLAGVLL 247 (898)
T ss_pred HhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhccc---------------ccccchhheeh
Confidence 533 25566788999988876555433233333333222 13455666778
Q ss_pred HHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCChhHHH
Q 002083 255 LKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA---NPKLIESAADVIARFLKSDSHNLKY 331 (969)
Q Consensus 255 LklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~---~~~ll~~ai~~L~~fL~s~d~NlrY 331 (969)
+|....+-..+++.-..|.++|...+.. -+.+|.+|++|.++.+.. .++++..++..|..||.+...-+||
T Consensus 248 vr~~~~ll~~n~q~~~q~rpfL~~wls~------k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rF 321 (898)
T COG5240 248 VRATVELLKENSQALLQLRPFLNSWLSD------KFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRF 321 (898)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHhcC------cchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHH
Confidence 8888777777777777788888887763 256899999999988643 5789999999999999999899999
Q ss_pred HHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 002083 332 MGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCV 411 (969)
Q Consensus 332 vaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~ 411 (969)
-+++.|.+|+..+|..+.-+...+..++.|.+.+|..-|+..|++..|++|+..+++.+-.|+.+.+| .||.-+|.++.
T Consensus 322 sA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD-~FKiI~ida~r 400 (898)
T COG5240 322 SAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSD-GFKIIAIDALR 400 (898)
T ss_pred HHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhcc-CceEEeHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999877 79999999999
Q ss_pred HHhhhcCCchHHHHHHHHHHHhhhCccchH-HHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHH
Q 002083 412 ELAEQFAPSNHWFIQTMNKVFEHAGDLVNI-KVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQV 490 (969)
Q Consensus 412 ~laekyap~~~W~Id~L~~ll~~~gd~v~~-ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~ 490 (969)
.||.+|+.....|+++|...+...|.+-.. .++..+.+.+ ..+|+.++.|++.||++|+|++++++.+++
T Consensus 401 sLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~---------~~~p~skEraLe~LC~fIEDcey~~I~vrI 471 (898)
T COG5240 401 SLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAM---------ENDPDSKERALEVLCTFIEDCEYHQITVRI 471 (898)
T ss_pred HHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH---------hhCchHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 999999988889999999998888887543 3444444444 346999999999999999999999987764
Q ss_pred HHHHhccccCCCCCCChHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhcCCChh
Q 002083 491 ICWVLGEYGTADGKVSASYITGKLCDVAEAY-SNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTD 569 (969)
Q Consensus 491 i~WILGEY~~~~~~~~~~~Il~~L~~~~~~~-~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~s~d~E 569 (969)
..|+|+-|.... .|...++++ +++. .|...||...+.|+.|+..... ..-....+..+|.+++++.|.|
T Consensus 472 -L~iLG~EgP~a~--~P~~yvrhI---yNR~iLEN~ivRsaAv~aLskf~ln~~----d~~~~~sv~~~lkRclnD~Dde 541 (898)
T COG5240 472 -LGILGREGPRAK--TPGKYVRHI---YNRLILENNIVRSAAVQALSKFALNIS----DVVSPQSVENALKRCLNDQDDE 541 (898)
T ss_pred -HHHhcccCCCCC--CcchHHHHH---HHHHHHhhhHHHHHHHHHHHHhccCcc----ccccHHHHHHHHHHHhhcccHH
Confidence 789999997643 334445553 3333 6788999999999999865421 1223346788999999999999
Q ss_pred HHhHHHHHHHHhcCC
Q 002083 570 LQQRAYELEAVTGLD 584 (969)
Q Consensus 570 VQqRA~Ey~~LL~~~ 584 (969)
|||||.+.++-++..
T Consensus 542 VRdrAsf~l~~~~~~ 556 (898)
T COG5240 542 VRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999988754
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.33 E-value=7.8e-10 Score=131.66 Aligned_cols=385 Identities=15% Similarity=0.219 Sum_probs=178.0
Q ss_pred hcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc--ccchHhh-HHHHHHHhcCCCC
Q 002083 82 THDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI--NEETIPA-VLPQVVELLGHSK 158 (969)
Q Consensus 82 ~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~--~~el~~~-l~~~V~~lL~d~~ 158 (969)
+.++|...+-++--+++.+. ++|++--+.+.+.+=+.|++|++|-.|+-++.++. .|+.++. +.+.+.++|.|++
T Consensus 88 l~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~ 165 (526)
T PF01602_consen 88 LNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD 165 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS
T ss_pred hcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc
Confidence 34455544444444444433 45555555566666666666666665555555542 3555555 4666666666666
Q ss_pred hHHHHHHHHHHHHHHhhCC----cchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh--HHHHHHHHHHHHHHH
Q 002083 159 EAVRRKAIMALHRFYQKSP----SSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY--KDLVISFVSILKQVA 232 (969)
Q Consensus 159 pyVRKkA~lal~kiy~~~P----e~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~--~~Lv~~lv~iLk~l~ 232 (969)
+-|+..|+.++..+ +..| +.+..++..+.+++.+.+|-+....+.+|..+++.++..- ..++..+.+.|...
T Consensus 166 ~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~- 243 (526)
T PF01602_consen 166 PSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSS- 243 (526)
T ss_dssp HHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred chhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcc-
Confidence 66666666655555 2222 2244455555555556666655555555555554444333 23444444444321
Q ss_pred hccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC-CHHHH
Q 002083 233 ERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA-NPKLI 311 (969)
Q Consensus 233 ~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~-~~~ll 311 (969)
++=.....++++..+.+..+ ......+.|..++...+ .-+.|-+++++..+.. ++..+
T Consensus 244 --------------~~~V~~e~~~~i~~l~~~~~-~~~~~~~~L~~lL~s~~------~nvr~~~L~~L~~l~~~~~~~v 302 (526)
T PF01602_consen 244 --------------SPSVVYEAIRLIIKLSPSPE-LLQKAINPLIKLLSSSD------PNVRYIALDSLSQLAQSNPPAV 302 (526)
T ss_dssp --------------HHHHHHHHHHHHHHHSSSHH-HHHHHHHHHHHHHTSSS------HHHHHHHHHHHHHHCCHCHHHH
T ss_pred --------------ccHHHHHHHHHHHHhhcchH-HHHhhHHHHHHHhhccc------chhehhHHHHHHHhhcccchhh
Confidence 33344445555555444322 23344455555555221 1244444444444432 12222
Q ss_pred HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCC-CchHHHHHHHHHhhccc--CCCcHHHHH
Q 002083 312 ESAADVIARFLK-SDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLED-PDDTLKRKTFELLYKMT--KSSNVEVIV 387 (969)
Q Consensus 312 ~~ai~~L~~fL~-s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D-~D~sIR~kaLdLL~~L~--n~~Nv~~IV 387 (969)
. .......++. +.+..+|..+|+.|..++... -+..-...++.++.+ +|..+|+.++..+..++ ...+.+..+
T Consensus 303 ~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~--n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v 379 (526)
T PF01602_consen 303 F-NQSLILFFLLYDDDPSIRKKALDLLYKLANES--NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYV 379 (526)
T ss_dssp G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHH
T ss_pred h-hhhhhhheecCCCChhHHHHHHHHHhhccccc--chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHH
Confidence 2 1111222233 455556666666665555322 111112233333322 24455555555555444 233445555
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhh-------------Ccc---chH-HHHHHHHHH
Q 002083 388 DRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHA-------------GDL---VNI-KVAHNLMRL 450 (969)
Q Consensus 388 ~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~-------------gd~---v~~-ev~~~li~l 450 (969)
+.|++.+.. .+..+..+++..|..+..+++....+.+..|.+.+... |+| +.. +.+..+++.
T Consensus 380 ~~l~~ll~~-~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~ 458 (526)
T PF01602_consen 380 DTLLKLLEI-SGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRS 458 (526)
T ss_dssp HHHHHHHHC-TGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHH
T ss_pred HHHHHhhhh-ccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHH
Confidence 555555543 23344555555555555554444444444444433211 111 111 023344455
Q ss_pred HhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccC
Q 002083 451 IAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGT 500 (969)
Q Consensus 451 I~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~ 500 (969)
+.+.|.. ..+..+..++..+.++.......+ ....+.=.+..|+.
T Consensus 459 l~~~~~~----~~~~vk~~ilt~~~Kl~~~~~~~~-~~~~i~~~~~~~~~ 503 (526)
T PF01602_consen 459 LIENFIE----ESPEVKLQILTALAKLFKRNPENE-VQNEILQFLLSLAT 503 (526)
T ss_dssp HHHHHTT----SHHHHHHHHHHHHHHHHHHSCSTT-HHHHHHHHHHCHHH
T ss_pred HHHhhcc----ccHHHHHHHHHHHHHHHhhCCchh-hHHHHHHHHHHHhc
Confidence 5544432 235677777777777754322111 12233444555554
No 13
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.4e-07 Score=110.58 Aligned_cols=413 Identities=13% Similarity=0.175 Sum_probs=216.1
Q ss_pred ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH
Q 002083 139 NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK 218 (969)
Q Consensus 139 ~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~ 218 (969)
..|+.--+...|++=|+|++-||---|+.++..++ .||.++++.+.+.++|.-+|+.|.-=|+...+.++.+.|+...
T Consensus 101 ~qdvllLltNslknDL~s~nq~vVglAL~alg~i~--s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e 178 (866)
T KOG1062|consen 101 RQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC--SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE 178 (866)
T ss_pred chHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC--CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH
Confidence 34555556778888899999999999999998776 5899999999999999999999976444445678888888766
Q ss_pred HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-------hHHHHHHhHhccC-CCCCC-
Q 002083 219 DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-------MYTVVGDIFRKCD-SSSNI- 289 (969)
Q Consensus 219 ~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-------l~~iL~~iL~~~~-~~~Ni- 289 (969)
.+++.+.+.|..- -||| -+--+.++..+|...++..+. +..+|.++....- ...|+
T Consensus 179 ~f~~~~~~lL~ek----------~hGV-----L~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~ 243 (866)
T KOG1062|consen 179 HFVIAFRKLLCEK----------HHGV-----LIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVH 243 (866)
T ss_pred HhhHHHHHHHhhc----------CCce-----eeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCcc
Confidence 6677777776541 2454 233455566666554433322 2333333332211 11111
Q ss_pred ---CchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCC--ChhHHHHH-HHHHHHHHhhCh--hHHHHhHHhhccccC
Q 002083 290 ---GNAVLYECICCVSSIY-ANPKLIESAADVIARFLKSD--SHNLKYMG-IDALGRLIKTSP--EIAEQHQLAVIDCLE 360 (969)
Q Consensus 290 ---~~AVlyEaik~I~~l~-~~~~ll~~ai~~L~~fL~s~--d~NlrYva-L~~L~~I~~~~P--~l~~~h~~~I~~cL~ 360 (969)
.+=+..+.++++--+. .+++.-+..-+.|...+... +.|+-+.. .+++..|..++| .+-.--...+=.+|.
T Consensus 244 gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~ 323 (866)
T KOG1062|consen 244 GISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLL 323 (866)
T ss_pred CCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Confidence 1112334444433232 23333344445555554421 13322222 223333433332 222111222333456
Q ss_pred CCchHHHHHHHHHhhcccCCC--cHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCcc
Q 002083 361 DPDDTLKRKTFELLYKMTKSS--NVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDL 438 (969)
Q Consensus 361 D~D~sIR~kaLdLL~~L~n~~--Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~ 438 (969)
.+|..||--+|+.|.++++.+ =|+.==..+++++.+ .|..+|+....-...+.. ..+....++-|+.++....++
T Consensus 324 n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~D-pD~SIkrralELs~~lvn--~~Nv~~mv~eLl~fL~~~d~~ 400 (866)
T KOG1062|consen 324 NRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKD-PDVSIKRRALELSYALVN--ESNVRVMVKELLEFLESSDED 400 (866)
T ss_pred CCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHhccHH
Confidence 677888888888888877554 233334456677776 577888877765444432 345566667777777666555
Q ss_pred chHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCC--CCchhHHHHHHHHhccc-cCCCCCCChHHHHHHHH
Q 002083 439 VNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEP--KLPSVFLQVICWVLGEY-GTADGKVSASYITGKLC 515 (969)
Q Consensus 439 v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~--~~~e~l~~~i~WILGEY-~~~~~~~~~~~Il~~L~ 515 (969)
+..+++..+.. +.+.| .|+-| .-++.+.+.+... ...+..+..++-+|+|= .+.. +|...+|.
T Consensus 401 ~k~~~as~I~~-laEkf-------aP~k~-W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~-----~y~~~rLy 466 (866)
T KOG1062|consen 401 FKADIASKIAE-LAEKF-------APDKR-WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH-----EYAVLRLY 466 (866)
T ss_pred HHHHHHHHHHH-HHHhc-------CCcch-hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh-----hHHHHHHH
Confidence 65666655544 33433 23221 1233333333211 11122233334444443 2221 23232222
Q ss_pred H-HHhhcC--CcH----HHHHHHHHHHHHHHHHhhhccccCCC-cHHHHHHHHHHhcCCChhHHhHHHHHHHHhcCCH
Q 002083 516 D-VAEAYS--NDE----TIKAYAITALMKIYAFEIAAGRKVDM-LPECQSLIEELSASHSTDLQQRAYELEAVTGLDA 585 (969)
Q Consensus 516 ~-~~~~~~--e~~----~Vk~~ILtAl~KL~~~~~~~~~~~~~-~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~~ 585 (969)
. +.+.+. .+. .|-.|.|---.-+++......+.... ..++...++.++.++.-+.--+++-+.+|+++..
T Consensus 467 ~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 467 LALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 2 111110 010 11112111111111110000000011 2468889999998888778888999999988754
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=98.97 E-value=3.2e-06 Score=104.47 Aligned_cols=387 Identities=12% Similarity=0.163 Sum_probs=227.0
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHH--cCCCCcchHHHHH----HhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHH
Q 002083 43 RISEPDIPKRKMKEYIIRLVYVEM--LGHDASFGYIHAV----KMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQ 116 (969)
Q Consensus 43 ~f~~~~~~~~~~ke~l~KLiyl~m--lG~Dvsf~~~~vI----kl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLq 116 (969)
.+.++++ -+.||+|+++ ++..-.-..+-+| |=+.++|-..|-++--.++.+ ..++++-.++..++
T Consensus 76 ~~~S~d~-------elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I--r~~~i~e~l~~~lk 146 (746)
T PTZ00429 76 LAPSTDL-------ELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI--RVSSVLEYTLEPLR 146 (746)
T ss_pred HhCCCCH-------HHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 5555544 3557877776 5553333333444 445667776666655555544 34678888999999
Q ss_pred hhhcCccHHHHHHHHHHHHccc--ccchHh--hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh---hHHHHHHH
Q 002083 117 KDLKSDNYLIVCAALNAVCKLI--NEETIP--AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ---HLVSNFRK 189 (969)
Q Consensus 117 KDL~s~N~~vralALr~Ls~I~--~~el~~--~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~---~l~~~l~~ 189 (969)
|-|.|++|+||-.|.-++.++- .+++++ .+.+.+.++|.|+++.|.-.|+.++..+...+|+.+. ..+.++..
T Consensus 147 k~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~ 226 (746)
T PTZ00429 147 RAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVY 226 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 9999999999999999999873 567654 5678899999999999999999999999988887554 34445555
Q ss_pred hhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHH----HHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCC
Q 002083 190 RLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQ----VAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGD 265 (969)
Q Consensus 190 lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~----l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d 265 (969)
.|.+-+.--....+.+|....+.+......++..+...|+. ++ +.-++++=-+..+. +
T Consensus 227 ~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVV----------------l~Aik~il~l~~~~--~ 288 (746)
T PTZ00429 227 HLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVV----------------MGAIKVVANLASRC--S 288 (746)
T ss_pred HhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHH----------------HHHHHHHHHhcCcC--C
Confidence 55555555555556655554433333333444444433332 11 11112111111111 1
Q ss_pred hHHHh----hhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-hcCCC-hhHHHHHHHHHHH
Q 002083 266 KQASE----NMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARF-LKSDS-HNLKYMGIDALGR 339 (969)
Q Consensus 266 ~~~se----~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~f-L~s~d-~NlrYvaL~~L~~ 339 (969)
+...+ ++-..|..++. ...|+.+. ++..++.+.... |.++.. -+..| +..+| .-+|...|+.|..
T Consensus 289 ~~~~~~~~~rl~~pLv~L~s---s~~eiqyv-aLr~I~~i~~~~--P~lf~~---~~~~Ff~~~~Dp~yIK~~KLeIL~~ 359 (746)
T PTZ00429 289 QELIERCTVRVNTALLTLSR---RDAETQYI-VCKNIHALLVIF--PNLLRT---NLDSFYVRYSDPPFVKLEKLRLLLK 359 (746)
T ss_pred HHHHHHHHHHHHHHHHHhhC---CCccHHHH-HHHHHHHHHHHC--HHHHHH---HHHhhhcccCCcHHHHHHHHHHHHH
Confidence 11111 12122222221 22333222 233344444323 555543 24444 33333 4588888888888
Q ss_pred HHhhC--hhHHHHhHHhhccccCCCchHHHHHHHHHhhcccC--CCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002083 340 LIKTS--PEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTK--SSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAE 415 (969)
Q Consensus 340 I~~~~--P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n--~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~lae 415 (969)
|+... ..++ .++..+..|.|..++++++.-+-.++- ++-...+|+.|++++.. ..++..+.+..+..+..
T Consensus 360 Lane~Nv~~IL----~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~--~~~~v~e~i~vik~Ilr 433 (746)
T PTZ00429 360 LVTPSVAPEIL----KELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDR--RPELLPQVVTAAKDIVR 433 (746)
T ss_pred HcCcccHHHHH----HHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHH
Confidence 87543 2344 344556668888999999888888775 45577888888888864 33567788888888888
Q ss_pred hcCCchHHHHHHHH------------------HHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHH
Q 002083 416 QFAPSNHWFIQTMN------------------KVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRI 477 (969)
Q Consensus 416 kyap~~~W~Id~L~------------------~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~l 477 (969)
+|+... .+..+. +++..-++++. + +..+++.+.++|.+ ..++.|-.++..+.++
T Consensus 434 kyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~-~-a~~~L~~~i~~f~~----E~~~VqlqlLta~vKl 505 (746)
T PTZ00429 434 KYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE-N-GKDIIQRFIDTIME----HEQRVQLAILSAAVKM 505 (746)
T ss_pred HCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh-h-HHHHHHHHHhhhcc----CCHHHHHHHHHHHHHH
Confidence 886432 233332 33322222232 1 22344333344533 2467788888888877
Q ss_pred hC
Q 002083 478 IG 479 (969)
Q Consensus 478 L~ 479 (969)
+-
T Consensus 506 fl 507 (746)
T PTZ00429 506 FL 507 (746)
T ss_pred Hh
Confidence 54
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.91 E-value=2.6e-05 Score=103.59 Aligned_cols=494 Identities=15% Similarity=0.143 Sum_probs=257.4
Q ss_pred HHHHhhcCCCcchhHHHHHHHHhhhccCc-hH---HHH----HHHHHHhhhcCcc---HHHH---HHHHHHHHccccc--
Q 002083 77 HAVKMTHDDNLVLKRTGYLAVTLFLNEDH-DL---IIL----IVNTIQKDLKSDN---YLIV---CAALNAVCKLINE-- 140 (969)
Q Consensus 77 ~vIkl~sS~~~~~KRlgYLals~~~~~~~-dl---llL----~iNtLqKDL~s~N---~~vr---alALr~Ls~I~~~-- 140 (969)
-+|.++.+.+.+.|.-.=-++..+...+. |. .+. ++..|..=|++.+ ..++ ..||+.||.....
T Consensus 103 pLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~ 182 (2102)
T PLN03200 103 PLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFW 182 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchH
Confidence 35666677677666666555544443221 21 111 1334444455443 2222 2466667654321
Q ss_pred -chHh-hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcC-CChhHHHHHHHHHHHhhhh
Q 002083 141 -ETIP-AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCD-NDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 141 -el~~-~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D-~D~~Vv~aAl~~L~ei~~~ 212 (969)
.+++ -.++.+.++|.+.++.++..|+.+++++...+++... ..++.|.++|.+ .++.|.-.|+.+|..++.+
T Consensus 183 ~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~ 262 (2102)
T PLN03200 183 SATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ 262 (2102)
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC
Confidence 1122 3778899999999999999999999999887776443 357889999964 6678888888888888876
Q ss_pred CchhhH-----HHHHHHHHHHHH------------------------HHhccCCC------CcCCCC-C-----CChhHH
Q 002083 213 DVNSYK-----DLVISFVSILKQ------------------------VAERRLPK------SYDYHQ-M-----PAPFIQ 251 (969)
Q Consensus 213 ~p~~~~-----~Lv~~lv~iLk~------------------------l~~~~lp~------~y~y~~-v-----~~PWlQ 251 (969)
+++.-+ .-+|.|++.+.. +..+ .+. +-.++. . ..=|.-
T Consensus 263 s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg-~~~ll~~L~~ll~s~rd~~~~ada~gAL 341 (2102)
T PLN03200 263 SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG-MSALILYLGELSESPRSPAPIADTLGAL 341 (2102)
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC-chhhHHHHHHhhcccchHHHHHHHHhhH
Confidence 543211 113445544431 0000 000 000000 0 000111
Q ss_pred HHHHHH-------------------HHHhCC-CChHH-HhhhHHH---------HHHhHhccCC-------CCCCCchHH
Q 002083 252 IRLLKI-------------------LALLGS-GDKQA-SENMYTV---------VGDIFRKCDS-------SSNIGNAVL 294 (969)
Q Consensus 252 ikLLkl-------------------L~~l~~-~d~~~-se~l~~i---------L~~iL~~~~~-------~~Ni~~AVl 294 (969)
-.++++ |..+.+ .++.. .+...+. +..+|.+.+. -.-.+.-+.
T Consensus 342 ayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ 421 (2102)
T PLN03200 342 AYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQ 421 (2102)
T ss_pred HHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHH
Confidence 111111 111111 11110 0111111 1111221110 000012355
Q ss_pred HHHHHHHHhcCCC-HHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChh---HHHH--hHHhhccccCCCc
Q 002083 295 YECICCVSSIYAN-PKLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPE---IAEQ--HQLAVIDCLEDPD 363 (969)
Q Consensus 295 yEaik~I~~l~~~-~~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~---l~~~--h~~~I~~cL~D~D 363 (969)
-.++.++..+..+ .+..+ .++..|..||.+.+.+++..++..|..|+..+++ .+.. -...++.+|..+|
T Consensus 422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~ 501 (2102)
T PLN03200 422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS 501 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 5555555555422 33222 2567899999998899999999999999876543 2222 2356788899999
Q ss_pred hHHHHHHHHHhhccc-CCCcHHHHHH------HHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhC
Q 002083 364 DTLKRKTFELLYKMT-KSSNVEVIVD------RMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAG 436 (969)
Q Consensus 364 ~sIR~kaLdLL~~L~-n~~Nv~~IV~------eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~g 436 (969)
..+|..|.-.|..++ +++|+..+|. -|++.+.. .+...+.+++.+|..++... ...-+..+..++...+
T Consensus 502 ~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-gd~~~q~~Aa~AL~nLi~~~---d~~~I~~Lv~LLlsdd 577 (2102)
T PLN03200 502 QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-GGPKGQEIAAKTLTKLVRTA---DAATISQLTALLLGDL 577 (2102)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcc---chhHHHHHHHHhcCCC
Confidence 999999999999988 4557666553 46677765 57788899999998887642 2334455666664433
Q ss_pred ccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCCC----ChHHHHH
Q 002083 437 DLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKV----SASYITG 512 (969)
Q Consensus 437 d~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~----~~~~Il~ 512 (969)
..+...++..+-.++.-.-+++. ...-.....++..+.++++..+ +..++-++|+|+.|+...... .....+.
T Consensus 578 ~~~~~~aL~vLgnIlsl~~~~d~-~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp 654 (2102)
T PLN03200 578 PESKVHVLDVLGHVLSVASLEDL-VREGSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQDLCESLATDEIIN 654 (2102)
T ss_pred hhHHHHHHHHHHHHHhhcchhHH-HHHhhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence 32222222212121111100000 0000001247888999998663 344667789999998642110 0011233
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCC-cHHHHHHHHHHhcCCChhHHhHHHHHHHHh
Q 002083 513 KLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDM-LPECQSLIEELSASHSTDLQQRAYELEAVT 581 (969)
Q Consensus 513 ~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~-~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL 581 (969)
.++..+. ..+..++...-.|+.-++... ..+....+ ...++.-|-.++.+.|.++++-|.+-+.-+
T Consensus 655 PLV~LLs--s~~~~v~keAA~AL~nL~~~~-~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanL 721 (2102)
T PLN03200 655 PCIKLLT--NNTEAVATQSARALAALSRSI-KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721 (2102)
T ss_pred HHHHHHh--cCChHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 3444433 234456666666666665310 00000000 011233344455667777777777654433
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.79 E-value=1.1e-05 Score=107.11 Aligned_cols=436 Identities=14% Similarity=0.076 Sum_probs=258.3
Q ss_pred HHHHHhhhcCccHHH-HHHHHHHHHc-ccccchH-----hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh---
Q 002083 112 VNTIQKDLKSDNYLI-VCAALNAVCK-LINEETI-----PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ--- 181 (969)
Q Consensus 112 iNtLqKDL~s~N~~v-ralALr~Ls~-I~~~el~-----~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~--- 181 (969)
+.+|-+=|.++++.. ...++.+|.. +.++.+. ....+.+..+|.....-++..|+.|+.-+....++..+
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 345556666655442 3333444322 2222221 13345677788888899999999999988877776543
Q ss_pred --hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh-----HHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHH
Q 002083 182 --HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY-----KDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRL 254 (969)
Q Consensus 182 --~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~-----~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikL 254 (969)
..++.|.++|...+..+...|+..|..+...+...- ...+|.|+++|.. +++=.|-..
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s---------------~~~~iqeeA 508 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET---------------GSQKAKEDS 508 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC---------------CCHHHHHHH
Confidence 257888899988888888888877776665444322 2346778888742 345566666
Q ss_pred HHHHHHhCCCChHHHhh-----hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCh
Q 002083 255 LKILALLGSGDKQASEN-----MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA--NPKLIESAADVIARFLKSDSH 327 (969)
Q Consensus 255 LklL~~l~~~d~~~se~-----l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~--~~~ll~~ai~~L~~fL~s~d~ 327 (969)
.-.|..++..+++.... .++.|-++|+..+ .-+.-+++.++.++.. +.+ .+..|..++.+.++
T Consensus 509 awAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd------~~~q~~Aa~AL~nLi~~~d~~----~I~~Lv~LLlsdd~ 578 (2102)
T PLN03200 509 ATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG------PKGQEIAAKTLTKLVRTADAA----TISQLTALLLGDLP 578 (2102)
T ss_pred HHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC------HHHHHHHHHHHHHHHhccchh----HHHHHHHHhcCCCh
Confidence 77777777654432222 2345556666432 2455677777776632 233 23567778888889
Q ss_pred hHHHHHHHHHHHHHhhChh--HHH------HhHHhhccccCCCchHHHHHHHHHhhcccCCC--cHH-----HHHHHHHH
Q 002083 328 NLKYMGIDALGRLIKTSPE--IAE------QHQLAVIDCLEDPDDTLKRKTFELLYKMTKSS--NVE-----VIVDRMID 392 (969)
Q Consensus 328 NlrYvaL~~L~~I~~~~P~--l~~------~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~--Nv~-----~IV~eLl~ 392 (969)
+++-.+++.|..|+..-.. .+. .-...+..+|++++..+|+.|..+|..++..+ +++ .+|.-|+.
T Consensus 579 ~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~ 658 (2102)
T PLN03200 579 ESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK 658 (2102)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH
Confidence 9999999988777653211 111 12356788889999999999999999998633 222 24556777
Q ss_pred HHhhcCChhhHHHHHHHHHHHhhhcCCchHHH------HHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchh-
Q 002083 393 YMISINDNHYKTEIASRCVELAEQFAPSNHWF------IQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQ- 465 (969)
Q Consensus 393 yl~~~~D~~~k~eli~~I~~laekyap~~~W~------Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~- 465 (969)
.+.. .+.+.+++...++..++.-.......+ |..|+++++....-+.+..+..+-.++..+ +...+
T Consensus 659 LLss-~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~------e~~~ei 731 (2102)
T PLN03200 659 LLTN-NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP------EVAAEA 731 (2102)
T ss_pred HHhc-CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc------hHHHHH
Confidence 7765 567899999999998885433333333 445677776544444444444344433321 11111
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCCCChHH----------HHHHHHHHHhhcCCcHHHHHHHHHHH
Q 002083 466 LRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASY----------ITGKLCDVAEAYSNDETIKAYAITAL 535 (969)
Q Consensus 466 lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~~~~~----------Il~~L~~~~~~~~e~~~Vk~~ILtAl 535 (969)
....++..+.++|.+... ..+..++|.+.+-+.... .++ ++.-|++.++........-...|.++
T Consensus 732 ~~~~~I~~Lv~lLr~G~~--~~k~~Aa~AL~~L~~~~~---~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l 806 (2102)
T PLN03200 732 LAEDIILPLTRVLREGTL--EGKRNAARALAQLLKHFP---VDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEAL 806 (2102)
T ss_pred HhcCcHHHHHHHHHhCCh--HHHHHHHHHHHHHHhCCC---hhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 234567788888887643 236677888877765321 122 22334455543321212222234444
Q ss_pred HHHHHHhhhcc-ccCCCc-----HHHHHHHHHHhcCCChhHHhHHHHHHHHhcCC
Q 002083 536 MKIYAFEIAAG-RKVDML-----PECQSLIEELSASHSTDLQQRAYELEAVTGLD 584 (969)
Q Consensus 536 ~KL~~~~~~~~-~~~~~~-----~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~ 584 (969)
+-+.-..-..+ ....|. |.-++.|-+++.+.+++|||+|.|.+.=|-.+
T Consensus 807 ~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 807 ALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 44332110000 001111 22344554566888999999999977644333
No 17
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=5.1e-05 Score=90.20 Aligned_cols=389 Identities=15% Similarity=0.147 Sum_probs=255.0
Q ss_pred chhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcch
Q 002083 10 SKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVL 89 (969)
Q Consensus 10 sk~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~ 89 (969)
.|.+++...++++ ...+.+.....|+++...+.+.+..-+-.|+. +| -+.++.++|.-++|+..+.......
T Consensus 20 ikgir~~~~~e~~-----fis~~l~e~r~E~k~~d~~~k~~a~~kl~yl~--ml-g~d~swa~f~iveVmsssk~~~kri 91 (877)
T KOG1059|consen 20 IKGIRSHKEDEEK-----FISQCLEEIRQELKSDDLNVKSNAVLKLTYLE--ML-GVDMSWAAFHIVEVMSSSKFQQKRI 91 (877)
T ss_pred HHHHHHhcccHHH-----HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHH--HH-cchHHHHhhhhhhhhhhhhhHHHHH
Confidence 3444444444433 44555666677788877766666543223433 33 6788889999999998888888888
Q ss_pred hHHHHHHHHhhhccC--------------------------------chHHHHHHHHHHhhhcCccHHHHHHHHHHHHc-
Q 002083 90 KRTGYLAVTLFLNED--------------------------------HDLIILIVNTIQKDLKSDNYLIVCAALNAVCK- 136 (969)
Q Consensus 90 KRlgYLals~~~~~~--------------------------------~dlllL~iNtLqKDL~s~N~~vralALr~Ls~- 136 (969)
.+++|...-+-.... ||++.-+.|-+..=|+|+-||+|--|+-.|-+
T Consensus 92 gylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykv 171 (877)
T KOG1059|consen 92 GYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKV 171 (877)
T ss_pred hHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 888887654443332 45555555555555789999999999888876
Q ss_pred -ccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhCc
Q 002083 137 -LINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCD-NDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 137 -I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D-~D~~Vv~aAl~~L~ei~~~~p 214 (969)
+.-||-+...+|-++..|.|++|-|-.+|+-.++-+.+++|.-.-.+.+.|.++|.+ .|-=|+.-.+-+|-.+.+-.|
T Consensus 172 FLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 172 FLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred HHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCc
Confidence 467999999999999999999999999999999999999999777788889888854 344444455666666666777
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC--------CCChHHHhhhHHHHHHhHhccCCC
Q 002083 215 NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG--------SGDKQASENMYTVVGDIFRKCDSS 286 (969)
Q Consensus 215 ~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~--------~~d~~~se~l~~iL~~iL~~~~~~ 286 (969)
..-+.|++.+.+++..-+- .--|...+.... +++.........-|.-++...|
T Consensus 252 RLgKKLieplt~li~sT~A-----------------mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsD-- 312 (877)
T KOG1059|consen 252 RLGKKLIEPITELMESTVA-----------------MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSD-- 312 (877)
T ss_pred hhhhhhhhHHHHHHHhhHH-----------------HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCC--
Confidence 7777788777777654210 000111111110 1111112222333444444333
Q ss_pred CCCCchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC--hhHHHHhHHhhccccCCCc
Q 002083 287 SNIGNAVLYECICCVSSIY-ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS--PEIAEQHQLAVIDCLEDPD 363 (969)
Q Consensus 287 ~Ni~~AVlyEaik~I~~l~-~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~--P~l~~~h~~~I~~cL~D~D 363 (969)
.| +-|=...++..|. ..|..+..-.+.+.+.|.+.|.+||.-+|+.+.-|+... -++++.-..++ ....+
T Consensus 313 qN----LKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~---~~ae~ 385 (877)
T KOG1059|consen 313 QN----LKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHV---EKAEG 385 (877)
T ss_pred cc----HHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHH---Hhccc
Confidence 33 3344444554443 457777777888999999999999999999999998654 23333222222 22333
Q ss_pred hHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhh------cCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh
Q 002083 364 DTLKRKTFELLYKMTKSSNVEVIVDRMIDYMIS------INDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFE 433 (969)
Q Consensus 364 ~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~------~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~ 433 (969)
...|-..+.-+..+|..+|.+.|.+ +-=|+.- ..-..--..+...|.++|-|-..-...-|+.|..++.
T Consensus 386 t~yrdell~~II~iCS~snY~~Itd-FEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~ 460 (877)
T KOG1059|consen 386 TNYRDELLTRIISICSQSNYQYITD-FEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLD 460 (877)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhhhh-HHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHh
Confidence 5789999999999999999998876 2222211 1111223455666777777766666777777777775
No 18
>PRK09687 putative lyase; Provisional
Probab=98.75 E-value=1.9e-06 Score=95.48 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=66.7
Q ss_pred HHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHH
Q 002083 110 LIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRK 189 (969)
Q Consensus 110 L~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~ 189 (969)
+.++.|.+=|.|+|..+|..|+..|..+..++. .+.+.+++.|.++.||+.|+-+|..+-... ......++.|..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~----~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~~a~~~L~~ 97 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDV----FRLAIELCSSKNPIERDIGADILSQLGMAK-RCQDNVFNILNN 97 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchH----HHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchHHHHHHHHH
Confidence 344556666788888888888888888876654 445566788888888888888888764321 112334556665
Q ss_pred h-hcCCChhHHHHHHHHHHHhh
Q 002083 190 R-LCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 190 l-L~D~D~~Vv~aAl~~L~ei~ 210 (969)
+ +.|.|+.|..+|+.+|-+++
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRC 119 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhccc
Confidence 5 67888888888887776654
No 19
>PRK09687 putative lyase; Provisional
Probab=98.68 E-value=4.6e-06 Score=92.47 Aligned_cols=248 Identities=17% Similarity=0.121 Sum_probs=155.5
Q ss_pred HHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccch-HhhHHHHHHHh-cC
Q 002083 78 AVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEET-IPAVLPQVVEL-LG 155 (969)
Q Consensus 78 vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el-~~~l~~~V~~l-L~ 155 (969)
.++++.+++...|.-.--++..+- +++..-++.+ -++|.|+.+|..|..+|+.|..+.- .+..++.+..+ +.
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~--~~~~~~~l~~----ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRG--GQDVFRLAIE----LCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcC--cchHHHHHHH----HHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 456678888887777666665442 3455444443 4678899999999999999986542 24556667766 78
Q ss_pred CCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhcc
Q 002083 156 HSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERR 235 (969)
Q Consensus 156 d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~ 235 (969)
|+.+.||+.|+.++.++....+......++.+..++.|.|+.|..+++.+|..+- ++ ..++.++..|+.
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~----~ai~~L~~~L~d----- 170 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DE----AAIPLLINLLKD----- 170 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CH----HHHHHHHHHhcC-----
Confidence 9999999999999998865444334456777888888999999988888875442 22 234445555432
Q ss_pred CCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHH
Q 002083 236 LPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAA 315 (969)
Q Consensus 236 lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai 315 (969)
+++|.......-|..++..++.. .+.|...|.. .| ..|..+|+..+..+.. + .++
T Consensus 171 ----------~~~~VR~~A~~aLg~~~~~~~~~----~~~L~~~L~D----~~--~~VR~~A~~aLg~~~~-~----~av 225 (280)
T PRK09687 171 ----------PNGDVRNWAAFALNSNKYDNPDI----REAFVAMLQD----KN--EEIRIEAIIGLALRKD-K----RVL 225 (280)
T ss_pred ----------CCHHHHHHHHHHHhcCCCCCHHH----HHHHHHHhcC----CC--hHHHHHHHHHHHccCC-h----hHH
Confidence 35666666666666654333322 2334444432 12 3566777777666543 2 356
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccC-CCchHHHHHHHHHhh
Q 002083 316 DVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLE-DPDDTLKRKTFELLY 375 (969)
Q Consensus 316 ~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~-D~D~sIR~kaLdLL~ 375 (969)
..|...|.+. ++++-+..+|..|.. |.. ...+..+++ ++|..+++++++-|-
T Consensus 226 ~~Li~~L~~~--~~~~~a~~ALg~ig~--~~a----~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 226 SVLIKELKKG--TVGDLIIEAAGELGD--KTL----LPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHcCC--chHHHHHHHHHhcCC--HhH----HHHHHHHHhhCCChhHHHHHHHHHh
Confidence 6666666643 356656666555543 222 233444443 667777777776653
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.56 E-value=1.5e-05 Score=101.62 Aligned_cols=268 Identities=16% Similarity=0.136 Sum_probs=157.3
Q ss_pred HHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHh
Q 002083 111 IVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKR 190 (969)
Q Consensus 111 ~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~l 190 (969)
.++.|..-|.|+++.+|-.|+..|+.+..++ ..+.+.+.|.|+++.||..|+-+|.++-...+. .+.+..+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~----~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~ 692 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG----FGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDH 692 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh----HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHH
Confidence 4456667777888888888888888877655 345566777888888888888888776432222 1345566
Q ss_pred hcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHh
Q 002083 191 LCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASE 270 (969)
Q Consensus 191 L~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se 270 (969)
|.|.|+.|..+|+.+|-.+-..++ ..|+..|. -++|+.+...++-|..+...
T Consensus 693 L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~---------------D~d~~VR~~Av~aL~~~~~~------ 744 (897)
T PRK13800 693 LGSPDPVVRAAALDVLRALRAGDA-------ALFAAALG---------------DPDHRVRIEAVRALVSVDDV------ 744 (897)
T ss_pred hcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhc---------------CCCHHHHHHHHHHHhcccCc------
Confidence 777888888777766654422111 11222221 14777777777777665321
Q ss_pred hhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH
Q 002083 271 NMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ 350 (969)
Q Consensus 271 ~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~ 350 (969)
+.|...+... ..-|..+++..+..+..... .+...|..++.+.++.+|..++..|..+.... ..+
T Consensus 745 ---~~l~~~l~D~------~~~VR~~aa~aL~~~~~~~~---~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~~~-- 809 (897)
T PRK13800 745 ---ESVAGAATDE------NREVRIAVAKGLATLGAGGA---PAGDAVRALTGDPDPLVRAAALAALAELGCPP-DDV-- 809 (897)
T ss_pred ---HHHHHHhcCC------CHHHHHHHHHHHHHhccccc---hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hhH--
Confidence 1122333321 13677777777766643211 12345667777777888888877777664321 111
Q ss_pred hHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q 002083 351 HQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNK 430 (969)
Q Consensus 351 h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ 430 (969)
..++..|+|+|..+|+.|++.|-.+.+++-+ .-|+.-+.+ .+..+|.+++.+++.+. ...-....|..
T Consensus 810 --~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D-~~~~VR~~A~~aL~~~~-----~~~~a~~~L~~ 877 (897)
T PRK13800 810 --AAATAALRASAWQVRQGAARALAGAAADVAV----PALVEALTD-PHLDVRKAAVLALTRWP-----GDPAARDALTT 877 (897)
T ss_pred --HHHHHHhcCCChHHHHHHHHHHHhccccchH----HHHHHHhcC-CCHHHHHHHHHHHhccC-----CCHHHHHHHHH
Confidence 2255567777777888888877777655433 334444444 46677777777776641 12223445555
Q ss_pred HHhhhCccchHH
Q 002083 431 VFEHAGDLVNIK 442 (969)
Q Consensus 431 ll~~~gd~v~~e 442 (969)
.++.....|...
T Consensus 878 al~D~d~~Vr~~ 889 (897)
T PRK13800 878 ALTDSDADVRAY 889 (897)
T ss_pred HHhCCCHHHHHH
Confidence 554433334433
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.54 E-value=1.8e-05 Score=100.92 Aligned_cols=227 Identities=17% Similarity=0.170 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHH
Q 002083 125 LIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLC 204 (969)
Q Consensus 125 ~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~ 204 (969)
-.|-+||..| ..+ ..+.+...|.|++|.||+.|+.+|.++.. |+ .++.|..+|.|.|+.|..+|+.
T Consensus 609 ~~~~~~~~~l---~~~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~----~~~~L~~aL~D~d~~VR~~Aa~ 674 (897)
T PRK13800 609 SPRILAVLAL---DAP-----SVAELAPYLADPDPGVRRTAVAVLTETTP--PG----FGPALVAALGDGAAAVRRAAAE 674 (897)
T ss_pred hHHHHHHHhc---cch-----hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--hh----HHHHHHHHHcCCCHHHHHHHHH
Confidence 3444666665 222 34577888999999999999999998752 33 4567778899999999999998
Q ss_pred HHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccC
Q 002083 205 PLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCD 284 (969)
Q Consensus 205 ~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~ 284 (969)
.|.++....+. .+.+...|.. ++|+.+...++.|..+...+. ..|...|...
T Consensus 675 aL~~l~~~~~~-----~~~L~~~L~~---------------~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~- 726 (897)
T PRK13800 675 GLRELVEVLPP-----APALRDHLGS---------------PDPVVRAAALDVLRALRAGDA-------ALFAAALGDP- 726 (897)
T ss_pred HHHHHHhccCc-----hHHHHHHhcC---------------CCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCC-
Confidence 88777432121 1223333321 589999999999988765443 2233444422
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCch
Q 002083 285 SSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDD 364 (969)
Q Consensus 285 ~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~ 364 (969)
...|..++++.+..+... ..|..++.+.++.+|..+...|..+....+..+ ..+..+++|+|.
T Consensus 727 -----d~~VR~~Av~aL~~~~~~--------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~----~~L~~ll~D~d~ 789 (897)
T PRK13800 727 -----DHRVRIEAVRALVSVDDV--------ESVAGAATDENREVRIAVAKGLATLGAGGAPAG----DAVRALTGDPDP 789 (897)
T ss_pred -----CHHHHHHHHHHHhcccCc--------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhH----HHHHHHhcCCCH
Confidence 257999999999876542 335678888999999999999999876654332 335577899999
Q ss_pred HHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002083 365 TLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELA 414 (969)
Q Consensus 365 sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~la 414 (969)
.||..|+..|-.+.++..+ +..|+..+.+ .|..+|..++.+++.+.
T Consensus 790 ~VR~aA~~aLg~~g~~~~~---~~~l~~aL~d-~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 790 LVRAAALAALAELGCPPDD---VAAATAALRA-SAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHHHHHhcCCcchh---HHHHHHHhcC-CChHHHHHHHHHHHhcc
Confidence 9999999999999876433 3445566655 56678998998887664
No 22
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.53 E-value=2.6e-06 Score=88.14 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHH--cccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-hHHHHHHHhhcCCChhHH
Q 002083 123 NYLIVCAALNAVC--KLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-HLVSNFRKRLCDNDPGVM 199 (969)
Q Consensus 123 N~~vralALr~Ls--~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-~l~~~l~~lL~D~D~~Vv 199 (969)
||.+|+.|+.+|| .++-+.+++...+.+.++|.|++|.|||.|++++.++...+.--++ +++..+..+|.|.|+.|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 6889999999999 5678999999999999999999999999999999999998766555 355777788999999999
Q ss_pred HHHHHHHHHhhhh-CchhhHHHHHHHHHHH
Q 002083 200 GATLCPLFDLITV-DVNSYKDLVISFVSIL 228 (969)
Q Consensus 200 ~aAl~~L~ei~~~-~p~~~~~Lv~~lv~iL 228 (969)
..|...|.++... +++.+...++.++..|
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999877 6766555544444443
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.0021 Score=80.63 Aligned_cols=398 Identities=11% Similarity=0.145 Sum_probs=202.4
Q ss_pred HHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhh----HHHHHHHhhcCCChhHHHHHH
Q 002083 128 CAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQH----LVSNFRKRLCDNDPGVMGATL 203 (969)
Q Consensus 128 alALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~----l~~~l~~lL~D~D~~Vv~aAl 203 (969)
|-.+..+++-..++--+.+++.+.++++++++-.|-.|++-+..+-...++...+ +...|.+.+.|.+..|..+|+
T Consensus 101 ~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~ 180 (1075)
T KOG2171|consen 101 ADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAV 180 (1075)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHH
Confidence 5555556655556667789999999999999999999999999888888776654 555556667787666988887
Q ss_pred HHHHHhhhhC---c---hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHH-hhhHHHH
Q 002083 204 CPLFDLITVD---V---NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQAS-ENMYTVV 276 (969)
Q Consensus 204 ~~L~ei~~~~---p---~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~s-e~l~~iL 276 (969)
.++..++... . ..|+.++|+++++|..++.. .+.=.-..+|+.|..+.-.++..- ..+-+++
T Consensus 181 rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~-----------~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii 249 (1075)
T KOG2171|consen 181 RALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD-----------GDDDAAKSALEALIELLESEPKLLRPHLSQII 249 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc-----------cchHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 7766555433 2 35778888888888776531 111122334444444333222211 1111111
Q ss_pred HHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHH---
Q 002083 277 GDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQL--- 353 (969)
Q Consensus 277 ~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~--- 353 (969)
.-.+.-.. .+.. ++.+|..+|+.|..+++..|.....+..
T Consensus 250 ~~~l~Ia~-n~~l------------------------------------~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~ 292 (1075)
T KOG2171|consen 250 QFSLEIAK-NKEL------------------------------------ENSIRHLALEFLVSLSEYAPAMCKKLALLGH 292 (1075)
T ss_pred HHHHHHhh-cccc------------------------------------cHHHHHHHHHHHHHHHHhhHHHhhhchhhhc
Confidence 11111100 0111 1233333333333333322222211111
Q ss_pred ----hhcc---------------ccCCC----chHHHHHHHHHhhcccCCCcHHH-HHHHHHHHHhhcCChhhHHHHHHH
Q 002083 354 ----AVID---------------CLEDP----DDTLKRKTFELLYKMTKSSNVEV-IVDRMIDYMISINDNHYKTEIASR 409 (969)
Q Consensus 354 ----~I~~---------------cL~D~----D~sIR~kaLdLL~~L~n~~Nv~~-IV~eLl~yl~~~~D~~~k~eli~~ 409 (969)
.++. -++|+ +..+-.++||.|-.--..+-+-. +++-+-.+++ +.+-.+|...+.+
T Consensus 293 ~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~-S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 293 TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQ-STEWKERHAALLA 371 (1075)
T ss_pred cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhc-CCCHHHHHHHHHH
Confidence 1111 11122 24677788888776555554444 4444445554 4677888999999
Q ss_pred HHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHH----HHHHHHHhCCCCCch
Q 002083 410 CVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSA----VESYLRIIGEPKLPS 485 (969)
Q Consensus 410 I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~a----v~~l~~lL~d~~~~e 485 (969)
|+.+++-=...-.-.++-++..+...=.--.+.|-+..+..|.+ +.. +-.|.++++. ...++..+++...+.
T Consensus 372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ-~st---dl~p~iqk~~~e~l~~aL~~~ld~~~~~r 447 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQ-MST---DLQPEIQKKHHERLPPALIALLDSTQNVR 447 (1075)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh-hhh---hhcHHHHHHHHHhccHHHHHHhcccCchH
Confidence 98888642111111222222222111011112233333334432 111 1235554444 334556666666665
Q ss_pred hHHHHHHHHhc--cccCCCCCCChHHHHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHhhhcccc-CCCcHHHHHHHH
Q 002083 486 VFLQVICWVLG--EYGTADGKVSASYITGKLCDVAEA--YSNDETIKAYAITALMKIYAFEIAAGRK-VDMLPECQSLIE 560 (969)
Q Consensus 486 ~l~~~i~WILG--EY~~~~~~~~~~~Il~~L~~~~~~--~~e~~~Vk~~ILtAl~KL~~~~~~~~~~-~~~~~~~~~lL~ 560 (969)
+...+++-+++ |++.. ..-.+|+=..+-+.+.. ...+..||.+++||++-+..-. +.. ....+.+...|.
T Consensus 448 V~ahAa~al~nf~E~~~~--~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA---~~~F~pY~d~~Mp~L~ 522 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEECDK--SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA---QEKFIPYFDRLMPLLK 522 (1075)
T ss_pred HHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---hhhhHhHHHHHHHHHH
Confidence 55555556554 44421 11112211111112221 2456789999999999875432 111 123345555666
Q ss_pred HHhcCCC----hhHHhHHHHHHHHhcC
Q 002083 561 ELSASHS----TDLQQRAYELEAVTGL 583 (969)
Q Consensus 561 ~~l~s~d----~EVQqRA~Ey~~LL~~ 583 (969)
.++...+ .++|=...|...++..
T Consensus 523 ~~L~n~~~~d~r~LrgktmEcisli~~ 549 (1075)
T KOG2171|consen 523 NFLQNADDKDLRELRGKTMECLSLIAR 549 (1075)
T ss_pred HHHhCCCchhhHHHHhhHHHHHHHHHH
Confidence 6654432 3455555566666654
No 24
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.0024 Score=80.27 Aligned_cols=316 Identities=15% Similarity=0.225 Sum_probs=177.1
Q ss_pred chHHHHHHHHHHhhhcCccHHHHHHHHHHHHcc---cccch---HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-
Q 002083 105 HDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL---INEET---IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP- 177 (969)
Q Consensus 105 ~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I---~~~el---~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P- 177 (969)
||++ +.+..-.+|+|+-.|-.||+.++++ .+... +..+.+-..++++|++..||-.|+-|+..+....+
T Consensus 117 Pell----~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 117 PELL----QFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred HHHH----HHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc
Confidence 5554 3445557899999999999999875 23333 33667777788888776699999999999988774
Q ss_pred --cch-------hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCCh
Q 002083 178 --SSV-------QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAP 248 (969)
Q Consensus 178 --e~v-------~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~P 248 (969)
+.+ +.++..+.+.+++.|..+...++.+|.|+....|+.+++.+..++.+.-++..++ + + ++
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~---~-----l-~~ 263 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNK---E-----L-EN 263 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc---c-----c-cH
Confidence 322 2344455566778888777788888999988888877776666666555554321 1 1 22
Q ss_pred hHHHHHHHHHHHhCCCChH-------HHhhhHH-----------------------------------HHHHhHhccCCC
Q 002083 249 FIQIRLLKILALLGSGDKQ-------ASENMYT-----------------------------------VVGDIFRKCDSS 286 (969)
Q Consensus 249 WlQikLLklL~~l~~~d~~-------~se~l~~-----------------------------------iL~~iL~~~~~~ 286 (969)
=..+..|.++..|...-|. .-..+.. .|..+-.+. ..
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L-~g 342 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHL-GG 342 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcC-Ch
Confidence 2334444444333211000 0000000 111110000 00
Q ss_pred CCCCchHHHHHHHHHHhcCCC------------------HHHHHHHHHH----HHHHhcCCChhHHHHHHHHHHHHHhhC
Q 002083 287 SNIGNAVLYECICCVSSIYAN------------------PKLIESAADV----IARFLKSDSHNLKYMGIDALGRLIKTS 344 (969)
Q Consensus 287 ~Ni~~AVlyEaik~I~~l~~~------------------~~ll~~ai~~----L~~fL~s~d~NlrYvaL~~L~~I~~~~ 344 (969)
+- --.++|+.+...+. .++ ++.++.-.+. +..+|.+++|-+||.++.++.+|...-
T Consensus 343 ~~-v~p~~~~~l~~~l~-S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 343 KQ-VLPPLFEALEAMLQ-STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred hh-ehHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 00 01234444433321 011 1222222222 344567788889999999999888765
Q ss_pred -hhHHHHhHHhhc----cccCCCc-hHHHHHHHHHh---hcccCCCcHHHHHHHHHH----HHhhcCChhhHHHHHHHHH
Q 002083 345 -PEIAEQHQLAVI----DCLEDPD-DTLKRKTFELL---YKMTKSSNVEVIVDRMID----YMISINDNHYKTEIASRCV 411 (969)
Q Consensus 345 -P~l~~~h~~~I~----~cL~D~D-~sIR~kaLdLL---~~L~n~~Nv~~IV~eLl~----yl~~~~D~~~k~eli~~I~ 411 (969)
|.+-+.|...+. ..++++. +.+..-|---| +.=|..+-+...++.|++ .+.+......+.-++.+|+
T Consensus 421 ~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 421 QPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred cHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 444444444443 3334442 23333222222 233455555555555554 4444455677888899998
Q ss_pred HHhh----hcCCchHHHHHHHHHHHhhhC
Q 002083 412 ELAE----QFAPSNHWFIQTMNKVFEHAG 436 (969)
Q Consensus 412 ~lae----kyap~~~W~Id~L~~ll~~~g 436 (969)
.+|. +|.|++...+-.|.+++..++
T Consensus 501 svA~AA~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 501 SVADAAQEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence 8874 466666666666667776665
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.50 E-value=0.00023 Score=85.37 Aligned_cols=257 Identities=13% Similarity=0.231 Sum_probs=171.1
Q ss_pred HHHHHHHHHhhhcCccHHHHHHHHHHHHcccccch-------HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch
Q 002083 108 IILIVNTIQKDLKSDNYLIVCAALNAVCKLINEET-------IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV 180 (969)
Q Consensus 108 llL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el-------~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v 180 (969)
.-=....|++-|.|+++.+|.+|++.++++....- -..+++.|..+|.|++..|.+.|+-++.++....+. +
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-L 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-H
Confidence 44455778889999999999999999998754331 156788999999999999999999999999975443 3
Q ss_pred hhH-----HHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHH-HHHHHHHHHHhccCCCCcCCCCCCChhHHHHH
Q 002083 181 QHL-----VSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVI-SFVSILKQVAERRLPKSYDYHQMPAPFIQIRL 254 (969)
Q Consensus 181 ~~l-----~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~-~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikL 254 (969)
..+ ...+..++...|..|...++.++.+++...+..+..... .+++.+-..++ + .|...|...
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~----------~-dDiLvqlna 222 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD----------S-DDILVQLNA 222 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc----------C-ccHHHHHHH
Confidence 333 677888776657778777888888888777664432221 12222211111 1 488999999
Q ss_pred HHHHHHhCCCChHHHh-----hhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC--CHHHH---HHHHHHHHHHhcC
Q 002083 255 LKILALLGSGDKQASE-----NMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA--NPKLI---ESAADVIARFLKS 324 (969)
Q Consensus 255 LklL~~l~~~d~~~se-----~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~--~~~ll---~~ai~~L~~fL~s 324 (969)
+.+|..++... ...+ .+.+.|...+...+...-.+.-.+...++.+.++.. ..... ....+.|..++.+
T Consensus 223 lell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s 301 (503)
T PF10508_consen 223 LELLSELAETP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES 301 (503)
T ss_pred HHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC
Confidence 99999998733 2222 234455556654422110122344455565544432 22332 2355667777889
Q ss_pred CChhHHHHHHHHHHHHHhhCh----------hHHHHhHHhhccccCCCchHHHHHHHHHhhcc
Q 002083 325 DSHNLKYMGIDALGRLIKTSP----------EIAEQHQLAVIDCLEDPDDTLKRKTFELLYKM 377 (969)
Q Consensus 325 ~d~NlrYvaL~~L~~I~~~~P----------~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L 377 (969)
.|++.+-+|++++..|+.... ..+......++.........||.++|+-|-.+
T Consensus 302 ~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 302 QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 999999999999999985432 22223344566666677678999988888777
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.46 E-value=0.001 Score=79.79 Aligned_cols=324 Identities=17% Similarity=0.210 Sum_probs=205.0
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHH-----HHHHHhhhcCccHHHHHHHHHHHHcccc-cchHhhH--
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILI-----VNTIQKDLKSDNYLIVCAALNAVCKLIN-EETIPAV-- 146 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~-----iNtLqKDL~s~N~~vralALr~Ls~I~~-~el~~~l-- 146 (969)
...+...+.+++-..|+++.-.+..+.+.+....-++ ...+..-+.+++..+...|.++|.++.. +.-.+.+
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~ 158 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD 158 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence 3445668889999999999888888876554422222 2345556788999999999999998854 3334445
Q ss_pred ---HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH
Q 002083 147 ---LPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK 218 (969)
Q Consensus 147 ---~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~ 218 (969)
...+.+++..+++.||.++.-++.++...+++... .+++.+.+.|.++|..|..+++-+|.++.. .+..+.
T Consensus 159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~ 237 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQ 237 (503)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHH
Confidence 67788888888999999999999999999998765 277888888999999999999999999986 333222
Q ss_pred -----HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh----hHHHHHHhHhccCCCCCC
Q 002083 219 -----DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN----MYTVVGDIFRKCDSSSNI 289 (969)
Q Consensus 219 -----~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~----l~~iL~~iL~~~~~~~Ni 289 (969)
.+++.+++++....+. | . ..-++-.-.++++..+...++..... +...|.+.+...|..
T Consensus 238 yL~~~gi~~~L~~~l~~~~~d--p---~----~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~--- 305 (503)
T PF10508_consen 238 YLEQQGIFDKLSNLLQDSEED--P---R----LSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPT--- 305 (503)
T ss_pred HHHhCCHHHHHHHHHhccccC--C---c----ccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChh---
Confidence 3445566665543211 1 0 01233344556676665544433222 223333333332211
Q ss_pred CchHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChh-----H---HHH---
Q 002083 290 GNAVLYECICCVSSI--------YANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPE-----I---AEQ--- 350 (969)
Q Consensus 290 ~~AVlyEaik~I~~l--------~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~-----l---~~~--- 350 (969)
-..+.++++-.|..- ...+..++.+.+.+...+.+...++|--+|++|..|....+. + ...
T Consensus 306 ~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~ 385 (503)
T PF10508_consen 306 IREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYE 385 (503)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 113334444444321 111223344566777777777789999999999999654432 1 111
Q ss_pred ------hHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHH---HHHHHHHhhcCC------hhhHHHHHHHHH
Q 002083 351 ------HQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIV---DRMIDYMISIND------NHYKTEIASRCV 411 (969)
Q Consensus 351 ------h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV---~eLl~yl~~~~D------~~~k~eli~~I~ 411 (969)
....++..++.|=+.||.-++.+|..||...-...-+ ..+++|+.+..- .+.|-+++++|.
T Consensus 386 ~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 386 SLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 1115666677776789999999999999987444333 235566643211 234555555554
No 27
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=98.45 E-value=0.00021 Score=83.02 Aligned_cols=137 Identities=17% Similarity=0.221 Sum_probs=86.7
Q ss_pred HHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHhcCC
Q 002083 252 IRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYAN------PKLIESAADVIARFLKSD 325 (969)
Q Consensus 252 ikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~------~~ll~~ai~~L~~fL~s~ 325 (969)
+..+++|..+|+.|+...-..++.+..+.++....-|. .-++...++.+++.... +-+.......+.+...
T Consensus 8 ~EaV~iLd~lC~~d~s~v~r~~p~ik~l~~R~~~~~~~-~~~lL~i~qFfL~hge~~~~d~e~~~~~~F~~~l~~~f~-- 84 (459)
T PF14764_consen 8 VEAVRILDVLCRQDPSLVYRVFPCIKRLFGRLASDLSS-ARVLLPIAQFFLNHGEAAAVDSEPVLQHFFTSVLSRLFH-- 84 (459)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHccChHhhcChHHHHHHHHHHhhHHhcC--
Confidence 44567777788888877667777777777665332231 13667777777665431 1111122223333332
Q ss_pred ChhHHHHH----HHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHH
Q 002083 326 SHNLKYMG----IDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMID 392 (969)
Q Consensus 326 d~NlrYva----L~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~ 392 (969)
|+-+-+-. .+++ ++...++.++.+|...|+.+|-=..+.+...=++||-.|+++.+..+++--|++
T Consensus 85 dp~lA~e~~~F~~~N~-~~L~~~~~~~~~~FP~llK~lAWn~~~l~~eFv~LLP~Li~~~Ta~EvlH~LLD 154 (459)
T PF14764_consen 85 DPFLAFETLQFCRDNL-KLLCSNTSIFPQYFPNLLKFLAWNSPSLVSEFVDLLPALISPGTAVEVLHSLLD 154 (459)
T ss_pred ChHHHHHHHHHHHHHH-HHHccccchHhHhchHHHHHHHcCcHHHHHHHHHHhHHHcCCCcHHHHHHHHHh
Confidence 23222222 2233 444556788888888999988766688889999999999999999988877765
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0017 Score=77.04 Aligned_cols=403 Identities=18% Similarity=0.233 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcC----------------------------
Q 002083 33 VLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHD---------------------------- 84 (969)
Q Consensus 33 I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS---------------------------- 84 (969)
|.-|--|-=-.+.+..+....+..++-|++=+...|---+---+-.++....
T Consensus 272 VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~ 351 (885)
T KOG2023|consen 272 VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD 351 (885)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc
Confidence 4555555555666666777777789999988777664222111111110000
Q ss_pred ---------------CCcchhHHHHHHHHhhhccC-chHHHHHHHHHHhhhcCccHHHHHHHHHHHHcc---cccch---
Q 002083 85 ---------------DNLVLKRTGYLAVTLFLNED-HDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL---INEET--- 142 (969)
Q Consensus 85 ---------------~~~~~KRlgYLals~~~~~~-~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I---~~~el--- 142 (969)
.+--+||..--++-.+++-- +|++--+--.|+.-|.+.+-.+|-.++-+++-| +..-|
T Consensus 352 ~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~ 431 (885)
T KOG2023|consen 352 DEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH 431 (885)
T ss_pred cccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc
Confidence 01345665555555554432 345555556777788888877776544444443 22233
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh----CC-cchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh
Q 002083 143 IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQK----SP-SSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 143 ~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~----~P-e~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
.+.++|.+..+|.|+.|.||+-++-++.|+-.. .+ +.+..++..+.+++-|.+--|.-||..+|..+-.+ ..
T Consensus 432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~---A~ 508 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE---AG 508 (885)
T ss_pred hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---cc
Confidence 345688888999999999999888888886542 22 33455667777777899999998888777554332 23
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC--C-CChHHHhhhHH-HHHHhHhccCCCCCCCchH
Q 002083 218 KDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG--S-GDKQASENMYT-VVGDIFRKCDSSSNIGNAV 293 (969)
Q Consensus 218 ~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~--~-~d~~~se~l~~-iL~~iL~~~~~~~Ni~~AV 293 (969)
..|+|++-.||.+++- -|.+++-.+=.+-.-.+.-|+... . .++...+.+.+ ++.+.=.-.+..++. =-
T Consensus 509 ~eLVp~l~~IL~~l~~-----af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL--fP 581 (885)
T KOG2023|consen 509 EELVPYLEYILDQLVF-----AFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL--FP 581 (885)
T ss_pred chhHHHHHHHHHHHHH-----HHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH--HH
Confidence 4678887788877642 111111112111111222222222 1 12222333333 333322222333332 34
Q ss_pred HHHHHHHHHh-c----CC-CHHHHHHHHHHHHHHh----c--------CCChhHHHHHHHHHHHHHhhC-----hhHHHH
Q 002083 294 LYECICCVSS-I----YA-NPKLIESAADVIARFL----K--------SDSHNLKYMGIDALGRLIKTS-----PEIAEQ 350 (969)
Q Consensus 294 lyEaik~I~~-l----~~-~~~ll~~ai~~L~~fL----~--------s~d~NlrYvaL~~L~~I~~~~-----P~l~~~ 350 (969)
++||..+|.. + .| .+...++|+..|.+-+ . ..|.+.-.++|+.+.-|++-- |-+++.
T Consensus 582 LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~s 661 (885)
T KOG2023|consen 582 LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQS 661 (885)
T ss_pred HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhc
Confidence 6888888753 1 12 3566777777766322 1 234566677888888887642 323333
Q ss_pred hH-HhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHh---hcCC---hhhHHHHHHHHHHHhhhcCCchH-
Q 002083 351 HQ-LAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMI---SIND---NHYKTEIASRCVELAEQFAPSNH- 422 (969)
Q Consensus 351 h~-~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~---~~~D---~~~k~eli~~I~~laekyap~~~- 422 (969)
.. ..++.|+.|+-+.+|.-+.-||-.||..= .+.|...+-+|+. ...+ ......++-+|+++|.|+.....
T Consensus 662 nl~~lll~C~~D~~peVRQS~FALLGDltk~c-~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~ 740 (885)
T KOG2023|consen 662 NLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC-FEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQ 740 (885)
T ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhh
Confidence 32 45678999999999999999999887652 3333333333332 2122 23456788889999999876655
Q ss_pred HHHHHHHHHHhh-hCccchHHHHHH
Q 002083 423 WFIQTMNKVFEH-AGDLVNIKVAHN 446 (969)
Q Consensus 423 W~Id~L~~ll~~-~gd~v~~ev~~~ 446 (969)
|.-.++.+++.+ ........++.+
T Consensus 741 ~v~~vl~~L~~iin~~~~~~tllEN 765 (885)
T KOG2023|consen 741 YVSPVLEDLITIINRQNTPKTLLEN 765 (885)
T ss_pred HHHHHHHHHHHHhcccCchHHHHHh
Confidence 444566677654 333444444433
No 29
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=7.5e-05 Score=89.10 Aligned_cols=257 Identities=18% Similarity=0.220 Sum_probs=165.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHH
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFV 225 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv 225 (969)
+...+.+-|.||++|||=..+--+.|+ +.||+++.+++.++..|.-+++-|.-+|+.++++|.+. +.+|+|..-
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~----~~~L~pDap 173 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN----FEHLIPDAP 173 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc--CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh----hhhhcCChH
Confidence 566788999999999998866655543 56999999999999999999999999999999888754 445555444
Q ss_pred HHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC
Q 002083 226 SILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY 305 (969)
Q Consensus 226 ~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~ 305 (969)
+++..++.....+.+. .+-|+ ..+ ..|++ .-.+.|...+..-.+-.-+-..|+.|-|+-..+
T Consensus 174 eLi~~fL~~e~DpsCk----RNAFi--------~L~-~~D~E---rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~-- 235 (948)
T KOG1058|consen 174 ELIESFLLTEQDPSCK----RNAFL--------MLF-TTDPE---RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL-- 235 (948)
T ss_pred HHHHHHHHhccCchhH----HHHHH--------HHH-hcCHH---HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh--
Confidence 5555543322111110 01111 111 12332 112223222221111101112577788877665
Q ss_pred CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhcccc-CCCchHHHHHHHHHhhcccCCCcHH
Q 002083 306 ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCL-EDPDDTLKRKTFELLYKMTKSSNVE 384 (969)
Q Consensus 306 ~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL-~D~D~sIR~kaLdLL~~L~n~~Nv~ 384 (969)
.+|....+-+.+|..||.+.++.++|=+--.|..+. .+|..+..-...+++|+ +.+|-.+|..-|+.|..+. ..|..
T Consensus 236 ~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~ 313 (948)
T KOG1058|consen 236 ANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEK 313 (948)
T ss_pred cCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHH
Confidence 567777888999999999999999998766665544 46888887778888886 4567789999999999987 44444
Q ss_pred HHHHHHHHHHh--hcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q 002083 385 VIVDRMIDYMI--SINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNK 430 (969)
Q Consensus 385 ~IV~eLl~yl~--~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ 430 (969)
.+.+-.++.++ +..|-++|++.+.-+..|++. -+.+-.+++|-+
T Consensus 314 il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss--rNvediv~~Lkk 359 (948)
T KOG1058|consen 314 ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS--RNVEDIVQFLKK 359 (948)
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh--ccHHHHHHHHHH
Confidence 33333345554 235677888777766666543 244455555543
No 30
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.33 E-value=0.005 Score=78.87 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=90.9
Q ss_pred hhcCccHHHHHHHHHHHHcccccch----HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcC
Q 002083 118 DLKSDNYLIVCAALNAVCKLINEET----IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCD 193 (969)
Q Consensus 118 DL~s~N~~vralALr~Ls~I~~~el----~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D 193 (969)
-|..+-.-+|+-||++|+.|...+= -+.+...|..-+.|++..||-+|+--+.|+..-+|+.+.++.+.+.+.+.|
T Consensus 824 ~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlD 903 (1692)
T KOG1020|consen 824 VLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILD 903 (1692)
T ss_pred HhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCC
Confidence 3556778899999999999875442 235556777888899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHH
Q 002083 194 NDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQV 231 (969)
Q Consensus 194 ~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l 231 (969)
.-.+|.=.++-.+.++|...|+. -..+.-+.+||+.+
T Consensus 904 tgvsVRKRvIKIlrdic~e~pdf-~~i~~~cakmlrRv 940 (1692)
T KOG1020|consen 904 TGVSVRKRVIKILRDICEETPDF-SKIVDMCAKMLRRV 940 (1692)
T ss_pred CchhHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHh
Confidence 99999999999999999888762 22223344555554
No 31
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0026 Score=76.87 Aligned_cols=273 Identities=14% Similarity=0.237 Sum_probs=181.2
Q ss_pred hcCccHHHHHHHHHHHH-cccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChh
Q 002083 119 LKSDNYLIVCAALNAVC-KLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPG 197 (969)
Q Consensus 119 L~s~N~~vralALr~Ls-~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~ 197 (969)
|.+++.-..+-|++.+- -|....=+..++|+|.+.+...+.-|||-..+-|.|.....|++.=--+..|++.|.|.|+.
T Consensus 44 LdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQL 123 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHH
Confidence 66677777777776653 34444457889999999999999999999999999999999996544478899999999999
Q ss_pred HHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHH
Q 002083 198 VMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVG 277 (969)
Q Consensus 198 Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~ 277 (969)
+.+.|+.+|..|-. .-++|-.+--+++.+. =++|+..-..-.-+..+-..|++...++.+++.
T Consensus 124 iRasALRvlSsIRv------p~IaPI~llAIk~~~~-----------D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~ 186 (968)
T KOG1060|consen 124 IRASALRVLSSIRV------PMIAPIMLLAIKKAVT-----------DPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK 186 (968)
T ss_pred HHHHHHHHHHhcch------hhHHHHHHHHHHHHhc-----------CCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH
Confidence 99999999876521 1123433444444432 146665544444444444556666668888888
Q ss_pred HhHhccCCCCCCCchHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC---hhHH-----
Q 002083 278 DIFRKCDSSSNIGNAVLYECICCVSSIYAN-PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS---PEIA----- 348 (969)
Q Consensus 278 ~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~-~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~---P~l~----- 348 (969)
.+|.-.+ .-|+=.|+-++-.+.|+ -+++-.-...|+++|-.-+-==+-+.+..|.+-++.. |...
T Consensus 187 ~LLaD~s------plVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e 260 (968)
T KOG1060|consen 187 KLLADRS------PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLE 260 (968)
T ss_pred HHhcCCC------CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccc
Confidence 8887431 23444444455445543 3444444556777775433334566677777766542 3110
Q ss_pred ---------------------HHhHHhhcc----ccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhH
Q 002083 349 ---------------------EQHQLAVID----CLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYK 403 (969)
Q Consensus 349 ---------------------~~h~~~I~~----cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k 403 (969)
......++. ||...+.++-.-.-.+.|.|+-..-+..|++-|+.-++. ....+
T Consensus 261 ~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs--~~~vq 338 (968)
T KOG1060|consen 261 DNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS--NREVQ 338 (968)
T ss_pred cCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc--CCcch
Confidence 011112222 334556777788888999999888888899999988874 44567
Q ss_pred HHHHHHHHHHhhh
Q 002083 404 TEIASRCVELAEQ 416 (969)
Q Consensus 404 ~eli~~I~~laek 416 (969)
--+...|..++.+
T Consensus 339 yvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 339 YVVLQNIATISIK 351 (968)
T ss_pred hhhHHHHHHHHhc
Confidence 7778888888876
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0025 Score=74.72 Aligned_cols=296 Identities=18% Similarity=0.249 Sum_probs=187.1
Q ss_pred cCchHHHHHHHHHHhhhc-CccH-----HHHHHHHHHHHc-ccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 002083 103 EDHDLIILIVNTIQKDLK-SDNY-----LIVCAALNAVCK-LINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQK 175 (969)
Q Consensus 103 ~~~dlllL~iNtLqKDL~-s~N~-----~vralALr~Ls~-I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~ 175 (969)
.+.+-+-=+|..+-+|.. +++. -..|+|.-++|- ..+....+.+.+.|..+++|++.-||--|+.+++.+.+.
T Consensus 35 ~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv 114 (675)
T KOG0212|consen 35 NDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKV 114 (675)
T ss_pred CcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHH
Confidence 345555566666667764 2222 344555555542 222225777889999999999999999999999999998
Q ss_pred CCcchh----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhh----CchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCC
Q 002083 176 SPSSVQ----HLVSNFRKRLCDNDPGVMGATLCPLFDLITV----DVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPA 247 (969)
Q Consensus 176 ~Pe~v~----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~----~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~ 247 (969)
.-..+- .+++-+.++-.|.|..|.++|= ++-.++++ ....| -.+.|+.+|+.-+. +.+
T Consensus 115 ~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIVte~~~tF--sL~~~ipLL~eriy-----------~~n 180 (675)
T KOG0212|consen 115 AKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIVTESASTF--SLPEFIPLLRERIY-----------VIN 180 (675)
T ss_pred hccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhcccccccc--CHHHHHHHHHHHHh-----------cCC
Confidence 765543 4556666667899999998763 33333332 22111 12455666654321 237
Q ss_pred hhHHHHHHHHHHHhCCC-ChHHHh---hhHHHHHHhHhccCCCCCCCchHHHHHHHHHH----hcCCCHHH--HHHHHHH
Q 002083 248 PFIQIRLLKILALLGSG-DKQASE---NMYTVVGDIFRKCDSSSNIGNAVLYECICCVS----SIYANPKL--IESAADV 317 (969)
Q Consensus 248 PWlQikLLklL~~l~~~-d~~~se---~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~----~l~~~~~l--l~~ai~~ 317 (969)
|...+.+++-+..+... +-+.-. .+.+-|...|. |+ +..|.--|=.++. .|..+|.. ....++.
T Consensus 181 ~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~Ls--D~----s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~v 254 (675)
T KOG0212|consen 181 PMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLS--DS----SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINV 254 (675)
T ss_pred chHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhc--CC----cHHHHHHHHHHHHHHHHHHhcCccccCcccchhh
Confidence 88888888888776432 211111 12233333332 21 1344433333222 23333333 2346777
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhH----HhhccccCCCch-HHHHHHH---HHhhcccCCCcHH-----
Q 002083 318 IARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQ----LAVIDCLEDPDD-TLKRKTF---ELLYKMTKSSNVE----- 384 (969)
Q Consensus 318 L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~----~~I~~cL~D~D~-sIR~kaL---dLL~~L~n~~Nv~----- 384 (969)
++.-+.++++.++-.+|..|..++++.|.-+-.+. ..++.|+.|.+. +||-.+- .+|.+++.+.--+
T Consensus 255 lv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~ 334 (675)
T KOG0212|consen 255 LVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY 334 (675)
T ss_pred ccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 88888899999999999999999999987655444 458889988877 4665543 3456666555444
Q ss_pred -HHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCC
Q 002083 385 -VIVDRMIDYMISINDNHYKTEIASRCVELAEQFAP 419 (969)
Q Consensus 385 -~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap 419 (969)
.|++-|..|+.+ +..+-|..+..-|..+-.+++.
T Consensus 335 ~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 335 GSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred HHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcc
Confidence 899999999975 4567788888888877777653
No 33
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.22 E-value=0.0034 Score=75.28 Aligned_cols=235 Identities=20% Similarity=0.228 Sum_probs=153.6
Q ss_pred CchhHHHHHHHHhcc--CChHH-HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH--HHHcCCCCcchHHHHHH---
Q 002083 9 QSKEFLDLVKSIGEA--RSKAE-EDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVY--VEMLGHDASFGYIHAVK--- 80 (969)
Q Consensus 9 ~sk~l~dlIk~Ir~~--ks~~e-E~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiy--l~mlG~Dvsf~~~~vIk--- 80 (969)
=+|.|..|.|.|+-- -..+| +-.+.++-+-.+.++|.+||- +||+.++|.+- |-.-|.+-.|..++++-
T Consensus 607 rgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDe---emkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff 683 (1172)
T KOG0213|consen 607 RGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDE---EMKKIVLKVVKQCCATDGVEPAYIRFDILPEFF 683 (1172)
T ss_pred cChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChH---HHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHH
Confidence 457788888887743 22233 344555557778889998764 67788888764 44588887777776653
Q ss_pred ------hhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHc----c-------------
Q 002083 81 ------MTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCK----L------------- 137 (969)
Q Consensus 81 ------l~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~----I------------- 137 (969)
-|+.+.-..|+++|++.++...-..+ -.|+-+..||.|.++..|-++..++++ +
T Consensus 684 ~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~---~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~l 760 (1172)
T KOG0213|consen 684 FSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD---PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERL 760 (1172)
T ss_pred hhhhhhhhhccccchhhHHHHHHHHHHHhCch---HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence 35666677889999988877654433 234555566666665444333322222 2
Q ss_pred -------------------------------cccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC---c--chh
Q 002083 138 -------------------------------INEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP---S--SVQ 181 (969)
Q Consensus 138 -------------------------------~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P---e--~v~ 181 (969)
+..-..+.+...|...|+++++-||..|+-.+.++...-. + .+.
T Consensus 761 idgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~ 840 (1172)
T KOG0213|consen 761 IDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMG 840 (1172)
T ss_pred HHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 1233344566778889999999999999988777665432 2 334
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhC-----chhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHH
Q 002083 182 HLVSNFRKRLCDNDPGVMGATLCPLFDLITVD-----VNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLK 256 (969)
Q Consensus 182 ~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~-----p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLk 256 (969)
++--.|.+-|...+|-|+++.+.+++.|.... -...++++|.+.-||+.- .+=.|...++
T Consensus 841 ~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr---------------heKVqen~Id 905 (1172)
T KOG0213|consen 841 HLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR---------------HEKVQENCID 905 (1172)
T ss_pred HhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh---------------HHHHHHHHHH
Confidence 55566777788899999998888887776432 124688899999998863 2345556666
Q ss_pred HHHHhCCC
Q 002083 257 ILALLGSG 264 (969)
Q Consensus 257 lL~~l~~~ 264 (969)
++..++..
T Consensus 906 Lvg~Iadr 913 (1172)
T KOG0213|consen 906 LVGTIADR 913 (1172)
T ss_pred HHHHHHhc
Confidence 66555543
No 34
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.17 E-value=0.0039 Score=76.60 Aligned_cols=287 Identities=16% Similarity=0.181 Sum_probs=180.5
Q ss_pred cchHHHHHHhhcCCCcc-----hhHHHHHHHHhhh----ccCchHHHHHHHHHHhhhcC--ccHHHHHHHHHHHHcccc-
Q 002083 72 SFGYIHAVKMTHDDNLV-----LKRTGYLAVTLFL----NEDHDLIILIVNTIQKDLKS--DNYLIVCAALNAVCKLIN- 139 (969)
Q Consensus 72 sf~~~~vIkl~sS~~~~-----~KRlgYLals~~~----~~~~dlllL~iNtLqKDL~s--~N~~vralALr~Ls~I~~- 139 (969)
++.|...+.+++.+-+. .-|=+|..+..+. ...++..-=++-.+-+|+++ .|.-++-+|+-+++.+.-
T Consensus 770 ~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~ 849 (1233)
T KOG1824|consen 770 DLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRR 849 (1233)
T ss_pred CccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccC
Confidence 34467767666665443 2233444333322 12234344445567778884 467888899988887753
Q ss_pred --cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHh-hCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-Cch
Q 002083 140 --EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQ-KSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV-DVN 215 (969)
Q Consensus 140 --~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~-~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~-~p~ 215 (969)
..-.+.+...|.+.++++++-|+++|..|+..+-- .-|.. ++.+.+.+ +.+|-=..--+..|.|++.. ...
T Consensus 850 ~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~y----Lpfil~qi-~sqpk~QyLLLhSlkevi~~~svd 924 (1233)
T KOG1824|consen 850 KDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKY----LPFILEQI-ESQPKRQYLLLHSLKEVIVSASVD 924 (1233)
T ss_pred CCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhH----HHHHHHHH-hcchHhHHHHHHHHHHHHHHhccc
Confidence 23345666688999999999999999999998765 33333 33333333 23443333345556666643 234
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHH
Q 002083 216 SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLY 295 (969)
Q Consensus 216 ~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVly 295 (969)
.+++-+..++.+|-+-.++ . .++..-.+=..|.+++-.|| +.++.-|...++... .|. .+.+.
T Consensus 925 ~~~~~v~~IW~lL~k~cE~--~---------eegtR~vvAECLGkL~l~ep---esLlpkL~~~~~S~a--~~~-rs~vv 987 (1233)
T KOG1824|consen 925 GLKPYVEKIWALLFKHCEC--A---------EEGTRNVVAECLGKLVLIEP---ESLLPKLKLLLRSEA--SNT-RSSVV 987 (1233)
T ss_pred hhhhhHHHHHHHHHHhccc--c---------hhhhHHHHHHHhhhHHhCCh---HHHHHHHHHHhcCCC--cch-hhhhh
Confidence 4455566666665543221 1 23445556677777776665 567777777666432 232 35556
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccC-------------
Q 002083 296 ECICCVSSIYAN--PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLE------------- 360 (969)
Q Consensus 296 Eaik~I~~l~~~--~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~------------- 360 (969)
.++|.-+...+. ..++++.++....++.+.|.++|-++|..|+..+...|.++..-..+++..|.
T Consensus 988 savKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreV 1067 (1233)
T KOG1824|consen 988 SAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREV 1067 (1233)
T ss_pred heeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhh
Confidence 666654443332 34666677777777889999999999999999999889888765555544442
Q ss_pred ---------CCchHHHHHHHHHhhcccCC
Q 002083 361 ---------DPDDTLKRKTFELLYKMTKS 380 (969)
Q Consensus 361 ---------D~D~sIR~kaLdLL~~L~n~ 380 (969)
|+-..+|+.|+|-+|.+.+.
T Consensus 1068 eMGPFKH~VDdgLd~RKaaFEcmytLLds 1096 (1233)
T KOG1824|consen 1068 EMGPFKHTVDDGLDLRKAAFECMYTLLDS 1096 (1233)
T ss_pred cccCccccccchHHHHHHHHHHHHHHHHh
Confidence 44578899999988887543
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0015 Score=77.46 Aligned_cols=345 Identities=17% Similarity=0.241 Sum_probs=204.6
Q ss_pred HHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc----chhhHHHHHHHhhcCCChhHHHHHH
Q 002083 128 CAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPS----SVQHLVSNFRKRLCDNDPGVMGATL 203 (969)
Q Consensus 128 alALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe----~v~~l~~~l~~lL~D~D~~Vv~aAl 203 (969)
|.||..|+++-..++.+.++|.+++.|.|..-.||-.+++|+.-|..=+-+ .++.+++.+..+|.|+.|.|..-+.
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 679999999999999999999999999999999999999999998774422 3456889999999999999875443
Q ss_pred HHHHHhh---hhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhH
Q 002083 204 CPLFDLI---TVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIF 280 (969)
Q Consensus 204 ~~L~ei~---~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL 280 (969)
-.|.... ..++ ..+-+.|-+-.+|+.++++ +-|.|-....-|+.+-- +.-+++.+.|..+|
T Consensus 456 WTLsRys~wv~~~~-~~~~f~pvL~~ll~~llD~------------NK~VQEAAcsAfAtleE---~A~~eLVp~l~~IL 519 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDS-RDEYFKPVLEGLLRRLLDS------------NKKVQEAACSAFATLEE---EAGEELVPYLEYIL 519 (885)
T ss_pred eeHhhhhhhHhcCC-hHhhhHHHHHHHHHHHhcc------------cHHHHHHHHHHHHHHHH---hccchhHHHHHHHH
Confidence 3333221 1222 2334556667777777653 66888888777776632 22344555555555
Q ss_pred hcc------CCCCCCCchHHHHHHHHHHhc---C-CCHHHHHHHHHHHHH---HhcCCChhHHHHHHHHHHHHHhhC---
Q 002083 281 RKC------DSSSNIGNAVLYECICCVSSI---Y-ANPKLIESAADVIAR---FLKSDSHNLKYMGIDALGRLIKTS--- 344 (969)
Q Consensus 281 ~~~------~~~~Ni~~AVlyEaik~I~~l---~-~~~~ll~~ai~~L~~---fL~s~d~NlrYvaL~~L~~I~~~~--- 344 (969)
++. -+.+|. -|+|.||.++..- . ..+.+++..+-+|.. +|+.+|.++ |--|.+|..++..-
T Consensus 520 ~~l~~af~kYQ~KNL--lILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~g 596 (885)
T KOG2023|consen 520 DQLVFAFGKYQKKNL--LILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVG 596 (885)
T ss_pred HHHHHHHHHHhhcce--ehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhcc
Confidence 432 134564 7999999988531 1 235666665555543 455566664 44577777776431
Q ss_pred -----hhHHHHhHHhhcccc------------CCCchHHHHHHHHHhhccc-----------CCCcHHHHHHHHHHHHhh
Q 002083 345 -----PEIAEQHQLAVIDCL------------EDPDDTLKRKTFELLYKMT-----------KSSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 345 -----P~l~~~h~~~I~~cL------------~D~D~sIR~kaLdLL~~L~-----------n~~Nv~~IV~eLl~yl~~ 396 (969)
+..+++....+-.|+ .-||...=-.+||++.+++ -.+| |.+-|+.++.+
T Consensus 597 F~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~sn---l~~lll~C~~D 673 (885)
T KOG2023|consen 597 FLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSN---LLDLLLQCLQD 673 (885)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhcc---HHHHHHHHhcc
Confidence 222333222222121 1233333445788887654 3344 45556677765
Q ss_pred cCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH--hhhCccchHHHHHHHHHHHh---cccCCCccccchhHHHHHH
Q 002083 397 INDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVF--EHAGDLVNIKVAHNLMRLIA---EGFGEDDDNADSQLRSSAV 471 (969)
Q Consensus 397 ~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll--~~~gd~v~~ev~~~li~lI~---~~~g~~~~~~~p~lr~~av 471 (969)
. -++.|.....-++.++.-+.+-..=|++-++.++ ...++.++ ++++.+-.|+ .++|.+ .. ..-..++
T Consensus 674 ~-~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~is--v~nNA~WAiGeia~k~g~~---~~-~~v~~vl 746 (885)
T KOG2023|consen 674 E-VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENIS--VCNNAIWAIGEIALKMGLK---MK-QYVSPVL 746 (885)
T ss_pred C-ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhch--HHHHHHHHHHHHHHHhchh---hh-hHHHHHH
Confidence 3 3477777777777777543222222222222222 22233332 3344333333 233321 11 2233467
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHhccccCC
Q 002083 472 ESYLRIIGEPKLPSVFLQVICWVLGEYGTA 501 (969)
Q Consensus 472 ~~l~~lL~d~~~~e~l~~~i~WILGEY~~~ 501 (969)
..+..+|.....+..++.-.+--||--|..
T Consensus 747 ~~L~~iin~~~~~~tllENtAITIGrLg~~ 776 (885)
T KOG2023|consen 747 EDLITIINRQNTPKTLLENTAITIGRLGYI 776 (885)
T ss_pred HHHHHHhcccCchHHHHHhhhhhhhhhhcc
Confidence 777788877766666655555566666653
No 36
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00047 Score=80.38 Aligned_cols=286 Identities=14% Similarity=0.195 Sum_probs=189.0
Q ss_pred HHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc----ccchHhhHHHHHHHhcCCCChHHHHHHHH
Q 002083 92 TGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI----NEETIPAVLPQVVELLGHSKEAVRRKAIM 167 (969)
Q Consensus 92 lgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~----~~el~~~l~~~V~~lL~d~~pyVRKkA~l 167 (969)
++--|...++.+|+++..-..-.|.--|++.-+++.--|-|.+|.+. .++.++.....++..|..++...|-.|+-
T Consensus 246 ~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~R 325 (898)
T COG5240 246 LLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMR 325 (898)
T ss_pred ehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44446677778889988888888888888888888888888888754 35566667777788888999999999999
Q ss_pred HHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-CchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCC
Q 002083 168 ALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV-DVNSYKDLVISFVSILKQVAERRLPKSYDYHQMP 246 (969)
Q Consensus 168 al~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~-~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~ 246 (969)
.+-++...+|+.+.-.-..+..++.|.|-.+-.-|+..|+ +. +.+....|+..+.+++..+ .
T Consensus 326 iln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLL---KTGt~e~idrLv~~I~sfvhD~--------------S 388 (898)
T COG5240 326 ILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLL---KTGTEETIDRLVNLIPSFVHDM--------------S 388 (898)
T ss_pred HHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHH---HcCchhhHHHHHHHHHHHHHhh--------------c
Confidence 9999999999999888888999999999888776666543 32 2233344444444554443 3
Q ss_pred ChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002083 247 APFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAV---LYECICCVSSIYANPKLIESAADVIARFLK 323 (969)
Q Consensus 247 ~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AV---lyEaik~I~~l~~~~~ll~~ai~~L~~fL~ 323 (969)
+.|- |-+++.++.++-.=|+....+++.|..+|... . |+-. ..+++.-++. -.|+..+++.+.|+.|+.
T Consensus 389 D~FK-iI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e-G----g~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIE 460 (898)
T COG5240 389 DGFK-IIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE-G----GLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIE 460 (898)
T ss_pred cCce-EEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc-c----cchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHh
Confidence 4443 23444455555444556667888888877642 1 1111 1244443333 346778999999999998
Q ss_pred CCChhHHHHHHHHHHHHHhhC-----hhHHHHhHHhhccccCCCchHHHHHHHHHh----hcccCCCcHHHHHHHHHHHH
Q 002083 324 SDSHNLKYMGIDALGRLIKTS-----PEIAEQHQLAVIDCLEDPDDTLKRKTFELL----YKMTKSSNVEVIVDRMIDYM 394 (969)
Q Consensus 324 s~d~NlrYvaL~~L~~I~~~~-----P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL----~~L~n~~Nv~~IV~eLl~yl 394 (969)
.. +.--+.++.|..|.+.- |..+.+|. +..+-=.+.-||.-|+.-| +..-+.---+.|..-|..++
T Consensus 461 Dc--ey~~I~vrIL~iLG~EgP~a~~P~~yvrhI---yNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcl 535 (898)
T COG5240 461 DC--EYHQITVRILGILGREGPRAKTPGKYVRHI---YNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCL 535 (898)
T ss_pred hc--chhHHHHHHHHHhcccCCCCCCcchHHHHH---HHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHh
Confidence 54 44556777777776654 44455553 3322123357899998888 44444444455666666677
Q ss_pred hhcCChhhHHHHHH
Q 002083 395 ISINDNHYKTEIAS 408 (969)
Q Consensus 395 ~~~~D~~~k~eli~ 408 (969)
.+ .|+++|..+.-
T Consensus 536 nD-~DdeVRdrAsf 548 (898)
T COG5240 536 ND-QDDEVRDRASF 548 (898)
T ss_pred hc-ccHHHHHHHHH
Confidence 66 46566655443
No 37
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.03 E-value=0.015 Score=69.91 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=80.5
Q ss_pred CCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCC-ChHHH
Q 002083 84 DDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHS-KEAVR 162 (969)
Q Consensus 84 S~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~-~pyVR 162 (969)
..|+.-+-.|--.++.+... ..++ -++.+++-|+.+.+++||--.-|+.+-+...-=++.++|.++....+. +.--|
T Consensus 452 ded~yar~egreIisnLaka-aGla-~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaR 529 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKA-AGLA-TMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQAR 529 (1172)
T ss_pred cchHHHhhchHHHHHHHHHH-hhhH-HHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhh
Confidence 44444444443333333321 1222 457799999999999999888888887777767788899999888876 67788
Q ss_pred HHHHHHHHHHHhhCCcc----hhhHHHHHHHhhcCCChhHH
Q 002083 163 RKAIMALHRFYQKSPSS----VQHLVSNFRKRLCDNDPGVM 199 (969)
Q Consensus 163 KkA~lal~kiy~~~Pe~----v~~l~~~l~~lL~D~D~~Vv 199 (969)
...+-++.+|..+.--. +..+++.+...|.|.+..|.
T Consensus 530 hTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR 570 (1172)
T KOG0213|consen 530 HTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVR 570 (1172)
T ss_pred chhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhh
Confidence 88888888877765422 34578888889999887764
No 38
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.037 Score=65.31 Aligned_cols=321 Identities=16% Similarity=0.172 Sum_probs=191.3
Q ss_pred HHHHHHHHHHH-cCCCCcc----hHHHHHHhhcCCCcchhHHHHHHHHhhhcc-CchHH---HHHHHHHHhhhcCccHHH
Q 002083 56 EYIIRLVYVEM-LGHDASF----GYIHAVKMTHDDNLVLKRTGYLAVTLFLNE-DHDLI---ILIVNTIQKDLKSDNYLI 126 (969)
Q Consensus 56 e~l~KLiyl~m-lG~Dvsf----~~~~vIkl~sS~~~~~KRlgYLals~~~~~-~~dll---lL~iNtLqKDL~s~N~~v 126 (969)
-.++-+..+-. +|.|... ..+.|+..++++|...+.-++-.+-..+.- ..++. -.+--.+.|=..+++..+
T Consensus 62 GgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V 141 (675)
T KOG0212|consen 62 GGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNV 141 (675)
T ss_pred chHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccc
Confidence 45555555433 8887533 335577788888886554444433333221 12211 122334556666777777
Q ss_pred HHHH---HHHHHcccccch----HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcc-----hhhHHHHHHHhhcCC
Q 002083 127 VCAA---LNAVCKLINEET----IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSS-----VQHLVSNFRKRLCDN 194 (969)
Q Consensus 127 ralA---Lr~Ls~I~~~el----~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~-----v~~l~~~l~~lL~D~ 194 (969)
++.| =|.+-.|.+++- ++.++|-+..-+...+|+.|.--+- -.++...-|+. ++.+++-+-.+|.|.
T Consensus 142 ~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~-Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 142 RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVS-WLYVLDSVPDLEMISYLPSLLDGLFNMLSDS 220 (675)
T ss_pred ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHH-HHHHHhcCCcHHHHhcchHHHHHHHHHhcCC
Confidence 7765 244445555554 5677788888888889999976444 44444444652 346778888889999
Q ss_pred ChhHHHHHHHHHHHh---hhhCchh--hHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHH-
Q 002083 195 DPGVMGATLCPLFDL---ITVDVNS--YKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQA- 268 (969)
Q Consensus 195 D~~Vv~aAl~~L~ei---~~~~p~~--~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~- 268 (969)
.+.|..-+=.++.+. ++..|.. |.+.++-++.-+ +-+.|++|.+.|.-+..+.+.-+..
T Consensus 221 s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l---------------~ss~~~iq~~al~Wi~efV~i~g~~~ 285 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL---------------QSSEPEIQLKALTWIQEFVKIPGRDL 285 (675)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc---------------cCCcHHHHHHHHHHHHHHhcCCCcch
Confidence 998874333332222 3344542 333333333222 3468999999988887765432211
Q ss_pred HhhhHHHHHHhHhccCCCCCCCchHHHHHHHHH----HhcCCCHHH-----HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002083 269 SENMYTVVGDIFRKCDSSSNIGNAVLYECICCV----SSIYANPKL-----IESAADVIARFLKSDSHNLKYMGIDALGR 339 (969)
Q Consensus 269 se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I----~~l~~~~~l-----l~~ai~~L~~fL~s~d~NlrYvaL~~L~~ 339 (969)
--.+-.+|..+|.....+.+ .-++++...+ ..+...+.. ....++.+.+.+.++.-+.|..+|+.+..
T Consensus 286 l~~~s~il~~iLpc~s~~e~---~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 286 LLYLSGILTAILPCLSDTEE---MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred hhhhhhhhhhcccCCCCCcc---ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 01112344444443222222 1123443322 233222221 23578889999998889999999999999
Q ss_pred HHhhChhHHHHhHHhhc----cccCCCchHHHHHHHHHhhcccCCCcHH---HHHHHHHHHHh
Q 002083 340 LIKTSPEIAEQHQLAVI----DCLEDPDDTLKRKTFELLYKMTKSSNVE---VIVDRMIDYMI 395 (969)
Q Consensus 340 I~~~~P~l~~~h~~~I~----~cL~D~D~sIR~kaLdLL~~L~n~~Nv~---~IV~eLl~yl~ 395 (969)
|....|.-+..|...|| .-|.|++..+-.++|+++-.+|+.+|-. ..+.-|++-+.
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFK 425 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHh
Confidence 99999977766665544 4568998999999999999999988764 33344444443
No 39
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0023 Score=77.38 Aligned_cols=282 Identities=13% Similarity=0.188 Sum_probs=176.7
Q ss_pred HhhhccCchHHHHHHHHHHhhhcCccHHHH---HHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 002083 98 TLFLNEDHDLIILIVNTIQKDLKSDNYLIV---CAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQ 174 (969)
Q Consensus 98 s~~~~~~~dlllL~iNtLqKDL~s~N~~vr---alALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~ 174 (969)
+.++++++....-.--.+-.-|.|..+++. |.|+..+.+....++.+ ....+.-.+..+++.+|-+|+..|.|+..
T Consensus 233 ~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 233 SELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred HHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 444455543222222233334555555544 55555555555555555 55667777888999999999999999999
Q ss_pred hCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHH
Q 002083 175 KSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRL 254 (969)
Q Consensus 175 ~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikL 254 (969)
.+|+.+.-.-..+..++.|.|-++..-|+..|+.-- +......|...+.++.. .+.++|.. .+
T Consensus 312 ~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG--~e~sv~rLm~qI~~fv~--------------disDeFKi-vv 374 (865)
T KOG1078|consen 312 KHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTG--TESSVDRLMKQISSFVS--------------DISDEFKI-VV 374 (865)
T ss_pred hCCccccccchhHHhhhcccccchhHHHHHHHHHhc--chhHHHHHHHHHHHHHH--------------hccccceE-Ee
Confidence 999988877788888999999888777776654321 11222223322233322 23466653 33
Q ss_pred HHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCChhHHHHH
Q 002083 255 LKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSI-YANPKLIESAADVIARFLKSDSHNLKYMG 333 (969)
Q Consensus 255 LklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l-~~~~~ll~~ai~~L~~fL~s~d~NlrYva 333 (969)
++-+..++..-|+...-|.+.|..+|+. +. |+.-.-..+.+|+.+ ..+++..+.+...|+.|+.+ .+..+++
T Consensus 375 vdai~sLc~~fp~k~~~~m~FL~~~Lr~-eG----g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED--ce~~~i~ 447 (865)
T KOG1078|consen 375 VDAIRSLCLKFPRKHTVMMNFLSNMLRE-EG----GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED--CEFTQIA 447 (865)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHh-cc----CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh--ccchHHH
Confidence 4444455554555666788889998886 22 222222233333333 24677778889999999974 5888999
Q ss_pred HHHHHHHHhhChhHH--HHhHHhhccccCCCchHHHHHHHHHhhccc--CCCcHHHHHHHHHHHHhhcCChhhHHH
Q 002083 334 IDALGRLIKTSPEIA--EQHQLAVIDCLEDPDDTLKRKTFELLYKMT--KSSNVEVIVDRMIDYMISINDNHYKTE 405 (969)
Q Consensus 334 L~~L~~I~~~~P~l~--~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~--n~~Nv~~IV~eLl~yl~~~~D~~~k~e 405 (969)
.+.|..+.+.-|... ..|..+|+...-=.+..+|.-|...|.++. ++.-...|...|..++.+ .|++.|.-
T Consensus 448 ~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D-~DdevRdr 522 (865)
T KOG1078|consen 448 VRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLND-SDDEVRDR 522 (865)
T ss_pred HHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcC-chHHHHHH
Confidence 999999887665432 123334444332234679999999999988 666667777778888876 35444433
No 40
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.89 E-value=0.004 Score=76.52 Aligned_cols=339 Identities=17% Similarity=0.202 Sum_probs=204.6
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCc------chHHHHHHhhcCCCcchhHHH-----HHHHHhhhccCc
Q 002083 37 IETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDAS------FGYIHAVKMTHDDNLVLKRTG-----YLAVTLFLNEDH 105 (969)
Q Consensus 37 laeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvs------f~~~~vIkl~sS~~~~~KRlg-----YLals~~~~~~~ 105 (969)
+.||=..+++.++..- +.-.-++-..+.++..+ ...-++|.++.|+-+..--+- +.++.....++-
T Consensus 695 L~el~~Lisesdlhvt---~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l 771 (1233)
T KOG1824|consen 695 LVELPPLISESDLHVT---QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL 771 (1233)
T ss_pred HHHhhhhhhHHHHHHH---HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc
Confidence 4444444555444322 33333444445666543 345668888888876533322 222333323333
Q ss_pred hHHHHHHHHHHhhhcCccH----------HH-HHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 002083 106 DLIILIVNTIQKDLKSDNY----------LI-VCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQ 174 (969)
Q Consensus 106 dlllL~iNtLqKDL~s~N~----------~v-ralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~ 174 (969)
| .+.....+++=.-+++- .. .+.||.+.|.=....++--+..++.. .+++.-+|=-|.+.+..+-+
T Consensus 772 ~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvfa~LslGElgr 848 (1233)
T KOG1824|consen 772 D-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVFALLSLGELGR 848 (1233)
T ss_pred c-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHHHHHhhhhhhcc
Confidence 3 33444444443333332 12 23445554443333333333322222 24556677677777777766
Q ss_pred hCCc-chhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHH
Q 002083 175 KSPS-SVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIR 253 (969)
Q Consensus 175 ~~Pe-~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQik 253 (969)
..+. -...+...+.+.++..+..|+.||-.+|-.+...+...|.++ +|.++. ..|.-|--
T Consensus 849 ~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpf------il~qi~-------------sqpk~QyL 909 (1233)
T KOG1824|consen 849 RKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPF------ILEQIE-------------SQPKRQYL 909 (1233)
T ss_pred CCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHH------HHHHHh-------------cchHhHHH
Confidence 5443 344577778888999999999999998887776666555443 333432 25667777
Q ss_pred HHHHHHHhCC---CC--hHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChh
Q 002083 254 LLKILALLGS---GD--KQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHN 328 (969)
Q Consensus 254 LLklL~~l~~---~d--~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~N 328 (969)
+|.-|...-. .| ....+++.++|.+-....+ --...|+-||.--++.+.|+ . ..-.|...+.|..++
T Consensus 910 LLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e---egtR~vvAECLGkL~l~epe-s----LlpkL~~~~~S~a~~ 981 (1233)
T KOG1824|consen 910 LLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE---EGTRNVVAECLGKLVLIEPE-S----LLPKLKLLLRSEASN 981 (1233)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch---hhhHHHHHHHhhhHHhCChH-H----HHHHHHHHhcCCCcc
Confidence 7776655422 12 2234555555544333222 11245889998776665553 2 235577788899999
Q ss_pred HHHHHHHHHHHHHhhChhH----HHHhHHhhccccCCCchHHHHHHHHHhhccc--CCCcHHHHHHHHHHHHhhcCChhh
Q 002083 329 LKYMGIDALGRLIKTSPEI----AEQHQLAVIDCLEDPDDTLKRKTFELLYKMT--KSSNVEVIVDRMIDYMISINDNHY 402 (969)
Q Consensus 329 lrYvaL~~L~~I~~~~P~l----~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~--n~~Nv~~IV~eLl~yl~~~~D~~~ 402 (969)
.|-.++.++...+..+|.. .+++...|+..++|||..+||.||-.+-.-+ .++=|..++++|+..+.+ ...+
T Consensus 982 ~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~--eTkv 1059 (1233)
T KOG1824|consen 982 TRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYS--ETKV 1059 (1233)
T ss_pred hhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHH--hhhh
Confidence 9999999998888777654 4566678999999999999999999887654 344578899999988864 4568
Q ss_pred HHHHHHHH
Q 002083 403 KTEIASRC 410 (969)
Q Consensus 403 k~eli~~I 410 (969)
|+|+|+.+
T Consensus 1060 rkelIreV 1067 (1233)
T KOG1824|consen 1060 RKELIREV 1067 (1233)
T ss_pred hHhhhhhh
Confidence 88888754
No 41
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0065 Score=74.84 Aligned_cols=271 Identities=17% Similarity=0.161 Sum_probs=152.4
Q ss_pred HHHHHHHhhhcCccHH-HHH--HHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHH
Q 002083 110 LIVNTIQKDLKSDNYL-IVC--AALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSN 186 (969)
Q Consensus 110 L~iNtLqKDL~s~N~~-vra--lALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~ 186 (969)
...+-+.|-..+.|.. -|- +=|...+... |+.+--..+.+.+=+.|++|++|-.|+-.+..+ ..++++..+++-
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~-P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l--~~~el~~~~~~~ 131 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLK-PELALLAVNTIQKDLQDPNEEIRGFALRTLSLL--RVKELLGNIIDP 131 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 3344444444444432 222 2233344433 455556678889999999999999999888754 568888999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCC-----cCCCCC----CChhHHHHHHHH
Q 002083 187 FRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKS-----YDYHQM----PAPFIQIRLLKI 257 (969)
Q Consensus 187 l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~-----y~y~~v----~~PWlQikLLkl 257 (969)
+++++.|+++-|...|.-++..+.+.+++.|.++ .++.+++.++...-|.- ..++.+ .-+|.--.+.++
T Consensus 132 ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~--g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i 209 (757)
T COG5096 132 IKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL--GLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRI 209 (757)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc--cHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHh
Confidence 9999999999999877777777776666555443 01233333221000000 000000 112322111111
Q ss_pred HHHhCCCChH-HHhhhH-HHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CChhHHHHHH
Q 002083 258 LALLGSGDKQ-ASENMY-TVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKS-DSHNLKYMGI 334 (969)
Q Consensus 258 L~~l~~~d~~-~se~l~-~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s-~d~NlrYvaL 334 (969)
-+. ...... ..+... -++..++.......+ .++.++..-+....+.++.++..+++.+.+++.- .+.|+.-...
T Consensus 210 ~~l-~~~~~~~~~~~~~~~~le~L~~~~~~~~~--s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~ 286 (757)
T COG5096 210 PQL-DLLSLSVSTEWLLLIILEVLTERVPTTPD--SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISS 286 (757)
T ss_pred hhc-cchhhhhhHHHHHHHHHHHHHccCCCCCC--cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhc
Confidence 111 100000 001111 112222222222222 4677777666666678888888899998888654 4566666666
Q ss_pred HHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHH
Q 002083 335 DALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMID 392 (969)
Q Consensus 335 ~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~ 392 (969)
..+..+....+.+. .| ++....--+.+.+.++++...++..-.+...|+..|-.
T Consensus 287 ~~l~~Ll~~~~~~~-~~---vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek 340 (757)
T COG5096 287 PPLVTLLAKPESLI-QY---VLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEK 340 (757)
T ss_pred cHHHHHHcCCHHHH-HH---HHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHH
Confidence 66666666553332 22 33223333567788888888888888888888776644
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.043 Score=65.14 Aligned_cols=296 Identities=15% Similarity=0.190 Sum_probs=182.3
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhc--cCchHHHHHH----HHHHhhhc-CccH---HHHHHHHHHHHcccccch--
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLN--EDHDLIILIV----NTIQKDLK-SDNY---LIVCAALNAVCKLINEET-- 142 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~--~~~dlllL~i----NtLqKDL~-s~N~---~vralALr~Ls~I~~~el-- 142 (969)
....+..+-|++.....-+--.+..++. .+|.+.-++. -.+-+-|. +.++ +..+.||+-+++......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 3445666777777664433333333332 2344333222 22333343 3344 445666666665322211
Q ss_pred -Hh-hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCCh-hHHHHHHHHHHHhhhhC-
Q 002083 143 -IP-AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDP-GVMGATLCPLFDLITVD- 213 (969)
Q Consensus 143 -~~-~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~-~Vv~aAl~~L~ei~~~~- 213 (969)
++ ...|...+++.++++.||-.|+-|+..+....|+.-. ..++.+..++...++ ..+.++.-+|..+|+..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 11 2345678999999999999999999999998887433 245666677766665 44455666777787643
Q ss_pred ch----hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhH-----HHHHHhHhccC
Q 002083 214 VN----SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMY-----TVVGDIFRKCD 284 (969)
Q Consensus 214 p~----~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~-----~iL~~iL~~~~ 284 (969)
|. ....+.|.+..+|+. .|+-...-..-.+.++.....+..+.+. ..|..+|.+.+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~---------------~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~ 292 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHS---------------TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS 292 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhc---------------CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC
Confidence 43 233444444444432 3555555555556666554444333332 34556666532
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCHHHHH------HHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhChhHHHH-----hH
Q 002083 285 SSSNIGNAVLYECICCVSSIYANPKLIE------SAADVIARFLK-SDSHNLKYMGIDALGRLIKTSPEIAEQ-----HQ 352 (969)
Q Consensus 285 ~~~Ni~~AVlyEaik~I~~l~~~~~ll~------~ai~~L~~fL~-s~d~NlrYvaL~~L~~I~~~~P~l~~~-----h~ 352 (969)
..|+.-|++++.+|....+... .+...|..++. +....+|--++..|..|..-+++-++. -.
T Consensus 293 ------~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~ 366 (514)
T KOG0166|consen 293 ------PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLI 366 (514)
T ss_pred ------cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccH
Confidence 2466788999988754332222 24567888887 455669999999999998877654432 33
Q ss_pred HhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhh
Q 002083 353 LAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 353 ~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~ 396 (969)
..++.+|...|..+|+.|.=.+..++...+ .+.+.||.+
T Consensus 367 p~Li~~l~~~ef~~rKEAawaIsN~ts~g~-----~~qi~yLv~ 405 (514)
T KOG0166|consen 367 PVLINLLQTAEFDIRKEAAWAISNLTSSGT-----PEQIKYLVE 405 (514)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhhcccCC-----HHHHHHHHH
Confidence 467888999999999999999999998888 445566654
No 43
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.64 E-value=0.057 Score=67.00 Aligned_cols=367 Identities=11% Similarity=0.164 Sum_probs=205.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhCchh----hHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHH
Q 002083 184 VSNFRKRLCDNDPGVMGATLCPLFDLITVDVNS----YKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILA 259 (969)
Q Consensus 184 ~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~----~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~ 259 (969)
..++..++...+ .++..++.+|.++..+.... -+.+++.|+++|.+ .++=+.+..+.+|.
T Consensus 252 ~kk~~~l~~kQe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr---------------~n~ellil~v~fLk 315 (708)
T PF05804_consen 252 LKKLQTLIRKQE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR---------------ENEELLILAVTFLK 315 (708)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC---------------CCHHHHHHHHHHHH
Confidence 344555555444 45557788888876433211 13344555555532 24557888889999
Q ss_pred HhCCCChHHH----hhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHhcCCChhHH
Q 002083 260 LLGSGDKQAS----ENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESA-----ADVIARFLKSDSHNLK 330 (969)
Q Consensus 260 ~l~~~d~~~s----e~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~a-----i~~L~~fL~s~d~Nlr 330 (969)
.++....... ..+.+.|.+++.. .| .-++-.++++++++.-+++++... +..|..||. +++.+
T Consensus 316 kLSi~~ENK~~m~~~giV~kL~kLl~s----~~--~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~--d~~~~ 387 (708)
T PF05804_consen 316 KLSIFKENKDEMAESGIVEKLLKLLPS----EN--EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK--DPNFR 387 (708)
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHhcC----CC--HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC--CCchH
Confidence 8876543211 1233445555552 22 257788999999999888776653 457888886 46888
Q ss_pred HHHHHHHHHHHhhC--hhHHH--HhHHhhccc-cCCCchHHHHHHHHHhhcc-cCCCcHHHHHH-----HHHHHHhhcCC
Q 002083 331 YMGIDALGRLIKTS--PEIAE--QHQLAVIDC-LEDPDDTLKRKTFELLYKM-TKSSNVEVIVD-----RMIDYMISIND 399 (969)
Q Consensus 331 YvaL~~L~~I~~~~--P~l~~--~h~~~I~~c-L~D~D~sIR~kaLdLL~~L-~n~~Nv~~IV~-----eLl~yl~~~~D 399 (969)
.+++..|+.|+... ...|. .....++.+ +..++..+....+-++..+ +++.|.+.|++ .|++......|
T Consensus 388 ~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D 467 (708)
T PF05804_consen 388 EVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD 467 (708)
T ss_pred HHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc
Confidence 99999999998653 22332 223344444 3445566666677777766 46777777665 23333333333
Q ss_pred hhhHHHHHHHHHHHhhhcC-CchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHH-HHHHHHHHH
Q 002083 400 NHYKTEIASRCVELAEQFA-PSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRS-SAVESYLRI 477 (969)
Q Consensus 400 ~~~k~eli~~I~~laekya-p~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~-~av~~l~~l 477 (969)
.++-++.+-...+. +...-+++.+.+++.....--.++..-.++-.+++-.. .+.+-..-+++ ..+.-+.++
T Consensus 468 -----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~-~~ld~~~ll~~~~llp~L~~~ 541 (708)
T PF05804_consen 468 -----PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI-PDLDWAQLLQEYNLLPWLKDL 541 (708)
T ss_pred -----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc-CCcCHHHHHHhCCHHHHHHHH
Confidence 23333332223333 44455666666555432222244544445554543110 00011111222 345555666
Q ss_pred hCCCCC-chhHHHHHHHHhccccCCCC---CCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcH
Q 002083 478 IGEPKL-PSVFLQVICWVLGEYGTADG---KVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLP 553 (969)
Q Consensus 478 L~d~~~-~e~l~~~i~WILGEY~~~~~---~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~ 553 (969)
|..... ++.++.+++| +|--+.... ...-..++..|+.++....++++.-.+|+-++-++..+......-.. ..
T Consensus 542 L~~g~~~dDl~LE~Vi~-~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~-~~ 619 (708)
T PF05804_consen 542 LKPGASEDDLLLEVVIL-LGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLK-ET 619 (708)
T ss_pred hCCCCCChHHHHHHHHH-HHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHh-cc
Confidence 665433 4556666555 776554311 01113467788888887788888888989888888776432100000 01
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHhc
Q 002083 554 ECQSLIEELSASHSTDLQQRAYELEAVTG 582 (969)
Q Consensus 554 ~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~ 582 (969)
++...|=.++.+.|.+||.=|-..+.++-
T Consensus 620 ~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 620 EIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22233345567899999999988877764
No 44
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.55 E-value=0.16 Score=63.14 Aligned_cols=274 Identities=15% Similarity=0.209 Sum_probs=141.3
Q ss_pred CccHHHHHHHHHHHHcccc-----cc-hHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHH
Q 002083 121 SDNYLIVCAALNAVCKLIN-----EE-TIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRK 189 (969)
Q Consensus 121 s~N~~vralALr~Ls~I~~-----~e-l~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~ 189 (969)
+.|.....+++++|-++.. .. ....+++.+.+++...+.-++..|+..|+.+- .+++... .+++++..
T Consensus 301 r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~ 379 (708)
T PF05804_consen 301 RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVE 379 (708)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHH
Confidence 3444444455555544331 11 12346677888998888889999888887764 3444332 37899999
Q ss_pred hhcCCChhHHHHHHHHHHHhhhhCch----hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCC
Q 002083 190 RLCDNDPGVMGATLCPLFDLITVDVN----SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGD 265 (969)
Q Consensus 190 lL~D~D~~Vv~aAl~~L~ei~~~~p~----~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d 265 (969)
+|.|.+.. ..++.+|+.++.++.. .|.+.+|.++++|-.. +++=.+..++-++..++...
T Consensus 380 LL~d~~~~--~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~--------------~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 380 LLKDPNFR--EVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN--------------SEEEVQLELIALLINLALNK 443 (708)
T ss_pred HhCCCchH--HHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC--------------CCccccHHHHHHHHHHhcCH
Confidence 99876543 3467888888765432 2334455555554321 23344555666666655432
Q ss_pred hHHHhhhHH--HHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 002083 266 KQASENMYT--VVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKT 343 (969)
Q Consensus 266 ~~~se~l~~--iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~ 343 (969)
+..+.|-+ .|..++++.-.. ..++++-++|.|.... ++.+
T Consensus 444 -rnaqlm~~g~gL~~L~~ra~~~---~D~lLlKlIRNiS~h~---------------------~~~k------------- 485 (708)
T PF05804_consen 444 -RNAQLMCEGNGLQSLMKRALKT---RDPLLLKLIRNISQHD---------------------GPLK------------- 485 (708)
T ss_pred -HHHHHHHhcCcHHHHHHHHHhc---ccHHHHHHHHHHHhcC---------------------chHH-------------
Confidence 22222211 111112111000 1234444444433221 1111
Q ss_pred ChhHHHHhHHhhccccCC-CchHHHHHHHHHhhcccCCC-cHHHHHHH--HHHHHhh-----cCChhhHHHHHHHHHHHh
Q 002083 344 SPEIAEQHQLAVIDCLED-PDDTLKRKTFELLYKMTKSS-NVEVIVDR--MIDYMIS-----INDNHYKTEIASRCVELA 414 (969)
Q Consensus 344 ~P~l~~~h~~~I~~cL~D-~D~sIR~kaLdLL~~L~n~~-Nv~~IV~e--Ll~yl~~-----~~D~~~k~eli~~I~~la 414 (969)
..|..|...+..++.. .+..+.-.+|-+|..|+-++ ++..++++ |+.|+.+ ..++++.-|+|.-++.+|
T Consensus 486 --~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 486 --ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred --HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 1122333333333332 24567777777777776443 67777764 5555553 134567777777777666
Q ss_pred hhcCCchH-----HHHHHHHHHHhhhCc--cchHHHHHHHHHHHh
Q 002083 415 EQFAPSNH-----WFIQTMNKVFEHAGD--LVNIKVAHNLMRLIA 452 (969)
Q Consensus 415 ekyap~~~-----W~Id~L~~ll~~~gd--~v~~ev~~~li~lI~ 452 (969)
.. ..-.. -++.+|+.++....+ .+.-.+++.+.+++.
T Consensus 564 ~d-~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 564 SD-PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF 607 (708)
T ss_pred CC-HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc
Confidence 32 11112 336777777765443 222335555666665
No 45
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.54 E-value=0.0011 Score=70.62 Aligned_cols=180 Identities=20% Similarity=0.177 Sum_probs=105.8
Q ss_pred HHHHHHHHHh--CCCCCchHHHHHHHHHHHHHHHcC--CCCcchHHH--------HHHhhcCCCcchhHHHHHHHHhhhc
Q 002083 35 NEIETLKRRI--SEPDIPKRKMKEYIIRLVYVEMLG--HDASFGYIH--------AVKMTHDDNLVLKRTGYLAVTLFLN 102 (969)
Q Consensus 35 ~ElaeiR~~f--~~~~~~~~~~ke~l~KLiyl~mlG--~Dvsf~~~~--------vIkl~sS~~~~~KRlgYLals~~~~ 102 (969)
+|++++...| ++++.+-.++.+++.+|--+..-| .+....++. +++.+.+.+-..=+.+...+..++.
T Consensus 3 ~~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~ 82 (228)
T PF12348_consen 3 YEFEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLAR 82 (228)
T ss_dssp ---GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4555555566 444455555557777766665555 121122222 3335555555444555555555443
Q ss_pred c---C-chHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccch-HhhH-HHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q 002083 103 E---D-HDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEET-IPAV-LPQVVELLGHSKEAVRRKAIMALHRFYQKS 176 (969)
Q Consensus 103 ~---~-~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el-~~~l-~~~V~~lL~d~~pyVRKkA~lal~kiy~~~ 176 (969)
. . ...+-.+++.|.+=+.+++..++..|-.+|-.|...-- .+.+ ...+..++.|++|-||..++.++..+....
T Consensus 83 ~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 83 QLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 2 1 12445677888888999999999998888877655433 3444 778888999999999999999999999998
Q ss_pred C---cch------hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc
Q 002083 177 P---SSV------QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 177 P---e~v------~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
+ ..+ +.+.+.+.+++.|.|+.|..+|-.+|..+...-|
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 8 222 4577888889999999999998888776654433
No 46
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.45 E-value=0.86 Score=59.55 Aligned_cols=278 Identities=12% Similarity=0.145 Sum_probs=163.5
Q ss_pred chhHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHHHHH-----cCCCCcchHHHHHHh
Q 002083 10 SKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRR---ISEPDIPKRKMKEYIIRLVYVEM-----LGHDASFGYIHAVKM 81 (969)
Q Consensus 10 sk~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~---f~~~~~~~~~~ke~l~KLiyl~m-----lG~Dvsf~~~~vIkl 81 (969)
.++|..-.+.| ...++|.+++ ++.||.. .+.+..+...+-..=.++||.+. +-+..++..-+++-.
T Consensus 751 ~~~~el~~~~v---~~~~n~~K~~---~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~ 824 (1692)
T KOG1020|consen 751 WFSFELAYEKV---ITVENELKYI---LSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSV 824 (1692)
T ss_pred HHHHHHHHHHH---hhhHHHHHHH---HHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHH
Confidence 44444444444 4456777776 3444443 33333322211112223333322 223344556677888
Q ss_pred hcCCCcchhHHHHHHHHhhhccCchHHH--HHHHHHHhhhcCccHHHHHHHHHHHHc--ccccchHhhHHHHHHHhcCCC
Q 002083 82 THDDNLVLKRTGYLAVTLFLNEDHDLII--LIVNTIQKDLKSDNYLIVCAALNAVCK--LINEETIPAVLPQVVELLGHS 157 (969)
Q Consensus 82 ~sS~~~~~KRlgYLals~~~~~~~dlll--L~iNtLqKDL~s~N~~vralALr~Ls~--I~~~el~~~l~~~V~~lL~d~ 157 (969)
+..+.+.+|--+-=+++.+...+|.++. .+=-++-.-+.|..-.||-.||--+++ +..+++++..+..|...+.|+
T Consensus 825 l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDt 904 (1692)
T KOG1020|consen 825 LGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDT 904 (1692)
T ss_pred hcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCC
Confidence 8888888877777778888888776542 233344455778889999999999997 458999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhhCCcchh--hHHHHHHHhhcCCChhHHHHHHHHHHHhhh-hCch-----hhHHHHHHHHHHHH
Q 002083 158 KEAVRRKAIMALHRFYQKSPSSVQ--HLVSNFRKRLCDNDPGVMGATLCPLFDLIT-VDVN-----SYKDLVISFVSILK 229 (969)
Q Consensus 158 ~pyVRKkA~lal~kiy~~~Pe~v~--~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~-~~p~-----~~~~Lv~~lv~iLk 229 (969)
.-.|||.|+--+..||..+|+... +..-++.....|..-.|.=-+.-.|+.+=- .-+. .+...++..+....
T Consensus 905 gvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~ 984 (1692)
T KOG1020|consen 905 GVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVM 984 (1692)
T ss_pred chhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHH
Confidence 999999999999999999998643 445555556677666555433334443311 1111 22223333333322
Q ss_pred HHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC------ChH---HHhhhHHHHHHhHhcc-------CCCCCCCchH
Q 002083 230 QVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG------DKQ---ASENMYTVVGDIFRKC-------DSSSNIGNAV 293 (969)
Q Consensus 230 ~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~------d~~---~se~l~~iL~~iL~~~-------~~~~Ni~~AV 293 (969)
... -....|.+--+..+|..+--. .+. ..+...+++.+++... +...-.+..-
T Consensus 985 ~~~-----------d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~ 1053 (1692)
T KOG1020|consen 985 SQV-----------DLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVR 1053 (1692)
T ss_pred HHH-----------HHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhH
Confidence 211 124568888888888765421 111 1122334444444321 1112224577
Q ss_pred HHHHHHHHHhc
Q 002083 294 LYECICCVSSI 304 (969)
Q Consensus 294 lyEaik~I~~l 304 (969)
+++|+.++..+
T Consensus 1054 ~~~~lstL~~F 1064 (1692)
T KOG1020|consen 1054 LLAYLSTLFVF 1064 (1692)
T ss_pred HHHHHHHHHHH
Confidence 88999887543
No 47
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.25 Score=59.45 Aligned_cols=323 Identities=14% Similarity=0.096 Sum_probs=166.6
Q ss_pred cCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccc-----hHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q 002083 103 EDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEE-----TIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP 177 (969)
Q Consensus 103 ~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~e-----l~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P 177 (969)
+++.-..|..+.=++-......-+|-.++.++-.+.... --+.+...+..+..+..+-||+.|+.+++.+.. --
T Consensus 151 ~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~ 229 (823)
T KOG2259|consen 151 EEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GF 229 (823)
T ss_pred chhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cc
Confidence 455555666666555444444444555555555443322 234455557778889999999999999998776 22
Q ss_pred cchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc----------hhhHHHHHHHHHHHHHHHh-ccC---CCCcCCC
Q 002083 178 SSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV----------NSYKDLVISFVSILKQVAE-RRL---PKSYDYH 243 (969)
Q Consensus 178 e~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p----------~~~~~Lv~~lv~iLk~l~~-~~l---p~~y~y~ 243 (969)
.+-..+.....+++.|.+-.|..+|+.++.-.....| +.+...+.++++.+...-- -+. ..--.+.
T Consensus 230 kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~ 309 (823)
T KOG2259|consen 230 KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE 309 (823)
T ss_pred cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH
Confidence 2222456777888999999999999877653333221 1223333444444433100 000 0000111
Q ss_pred CCCChhHHHHHHH-HHHHhCCC-----------------------ChHHHhhhHHHHHHhHhccCCCCCC------CchH
Q 002083 244 QMPAPFIQIRLLK-ILALLGSG-----------------------DKQASENMYTVVGDIFRKCDSSSNI------GNAV 293 (969)
Q Consensus 244 ~v~~PWlQikLLk-lL~~l~~~-----------------------d~~~se~l~~iL~~iL~~~~~~~Ni------~~AV 293 (969)
++..+++|--|=| ++.++.++ +...+++...-=..++.+.--+--+ -+-|
T Consensus 310 ~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EV 389 (823)
T KOG2259|consen 310 QVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEV 389 (823)
T ss_pred HhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHH
Confidence 2233333322211 11111000 0000000000000000000000000 0113
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHH
Q 002083 294 LYECICCVSSIY-ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFE 372 (969)
Q Consensus 294 lyEaik~I~~l~-~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLd 372 (969)
.-.|+-.+..+. ..|..-..+.+-|..++++..-.+|.-++..|..|+.. -.+=+.+...|+.||+|....||....+
T Consensus 390 R~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D~s~dvRe~l~e 468 (823)
T KOG2259|consen 390 RRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILESLEDRSVDVREALRE 468 (823)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 334444444443 23555566777777777776677777777777777655 2233445567788888887788777777
Q ss_pred Hhhc--ccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 002083 373 LLYK--MTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVF 432 (969)
Q Consensus 373 LL~~--L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll 432 (969)
||.. ..+.+-+...+.+|++.+....- =|.++...++.+.+++ ...++..|..++
T Consensus 469 lL~~~~~~d~~~i~m~v~~lL~~L~kyPq--Drd~i~~cm~~iGqnH---~~lv~s~m~rfl 525 (823)
T KOG2259|consen 469 LLKNARVSDLECIDMCVAHLLKNLGKYPQ--DRDEILRCMGRIGQNH---RRLVLSNMGRFL 525 (823)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhhhCCC--CcHHHHHHHHHHhccC---hhhHHHHHHHHH
Confidence 7653 34555566667777777664321 1566777777777663 344555555555
No 48
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.39 E-value=0.00094 Score=60.02 Aligned_cols=84 Identities=27% Similarity=0.292 Sum_probs=65.1
Q ss_pred HHHHhhh-cCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhh
Q 002083 113 NTIQKDL-KSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRL 191 (969)
Q Consensus 113 NtLqKDL-~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL 191 (969)
..|.+-| +++|+.+|..|+++|+.+..++ +.+.+.+++.|+++.||..|+.++.++- . +..++.+.+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~----~~~~~~L~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPE----AIPALIELLKDEDPMVRRAAARALGRIG--D----PEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHH----HHHHHHHHHTSSSHHHHHHHHHHHHCCH--H----HHTHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHh----HHHHHHHHHcCCCHHHHHHHHHHHHHhC--C----HHHHHHHHHHH
Confidence 4566777 8999999999999999998774 4667778889999999999999999873 2 33566777777
Q ss_pred cC-CChhHHHHHHHHH
Q 002083 192 CD-NDPGVMGATLCPL 206 (969)
Q Consensus 192 ~D-~D~~Vv~aAl~~L 206 (969)
.| .+..|..+|+.+|
T Consensus 72 ~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 72 QDDDDEVVREAAAEAL 87 (88)
T ss_dssp TC-SSHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhhc
Confidence 55 4566666665543
No 49
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.026 Score=66.91 Aligned_cols=248 Identities=15% Similarity=0.257 Sum_probs=167.1
Q ss_pred HHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHH-----HHHhhhcCccH--HH--HHHHHHHHHccccc----chH
Q 002083 77 HAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVN-----TIQKDLKSDNY--LI--VCAALNAVCKLINE----ETI 143 (969)
Q Consensus 77 ~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iN-----tLqKDL~s~N~--~v--ralALr~Ls~I~~~----el~ 143 (969)
.-|.+++|++...+.-+-.|+..++...++.--.+++ .|..-++.++. +. ...+|+-||+-.+| +-+
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v 235 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV 235 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 3478999999999999999999999888765433332 22222333332 33 34567777765542 457
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh-
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY- 217 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~- 217 (969)
..++|.+.+++.|.++.|..-|+.|+..+-.-.++.+. ...+.+.++|.-..+.|+..|+.++-.|...+....
T Consensus 236 ~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq 315 (514)
T KOG0166|consen 236 APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ 315 (514)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH
Confidence 78899999999999999999999999977777777665 357889999988888899889988776654443221
Q ss_pred ----HHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-----hHHHHHHhHhccCCCCC
Q 002083 218 ----KDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-----MYTVVGDIFRKCDSSSN 288 (969)
Q Consensus 218 ----~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-----l~~iL~~iL~~~~~~~N 288 (969)
..++|.|.++|... +.+-+.....-++...+.++++..+. +++.|..+|+.++
T Consensus 316 ~vi~~~~L~~l~~ll~~s--------------~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e---- 377 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSSS--------------PKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE---- 377 (514)
T ss_pred HHHhcChHHHHHHHhccC--------------cchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc----
Confidence 12334444444321 11122223444566677777654443 4567777887665
Q ss_pred CCchHHHHHHHHHHhcCCC--HHH----HH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC
Q 002083 289 IGNAVLYECICCVSSIYAN--PKL----IE-SAADVIARFLKSDSHNLKYMGIDALGRLIKTS 344 (969)
Q Consensus 289 i~~AVlyEaik~I~~l~~~--~~l----l~-~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~ 344 (969)
+-+.-||+-+|.++... ++. ++ .++.+++.+|.-.|.-+--++|+.|..|.+.-
T Consensus 378 --f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 378 --FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred --hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 46788999999887532 332 22 36778888887777777777788777776543
No 50
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.28 Score=60.00 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHcCCCC-----cc-hHHHHHHhhcCCCcchhHHHHHHHHhhhccCc------------------------
Q 002083 56 EYIIRLVYVEMLGHDA-----SF-GYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDH------------------------ 105 (969)
Q Consensus 56 e~l~KLiyl~mlG~Dv-----sf-~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~------------------------ 105 (969)
.++.-|.-++++-|+. .. .|.--+.-|-|++-+.+--|-=|++...++.-
T Consensus 236 aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 236 AAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 4444444444454542 22 33344667789999999999999986655432
Q ss_pred ---hHHHHHHHHHHh-hhc----CccH-HHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-
Q 002083 106 ---DLIILIVNTIQK-DLK----SDNY-LIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQK- 175 (969)
Q Consensus 106 ---dlllL~iNtLqK-DL~----s~N~-~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~- 175 (969)
++.-.+.++|.| |=. +=|| .--+.-|-.++..+..+|++.|+|.|+..+..++-.=|-.|+||...+..-
T Consensus 316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 444556666666 221 1233 333445666788899999999999999999999999999999999988752
Q ss_pred CCcc----hhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch
Q 002083 176 SPSS----VQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN 215 (969)
Q Consensus 176 ~Pe~----v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~ 215 (969)
+|+. +.+.++.+..+++|+.-.|.-++-+.|..++...+.
T Consensus 396 ~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 396 EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 2332 335677788888887777776666777777655443
No 51
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.28 E-value=0.13 Score=61.20 Aligned_cols=252 Identities=12% Similarity=0.161 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh-----hHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCC---
Q 002083 310 LIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP-----EIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSS--- 381 (969)
Q Consensus 310 ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P-----~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~--- 381 (969)
.+...+..+..+|+++.|++|--|++.+..|+..-. +.+...-..+++-|...++.+---.|.-++.+.+-.
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 345677888899999999999999998877765422 233344445566777777665555555555555433
Q ss_pred ----cHHHHHHHHHHHHhhcCChhh---HHHHHHHHHHHhhhcCCchHHHHHHHHHH---HhhhCccchHHHHHHHHHHH
Q 002083 382 ----NVEVIVDRMIDYMISINDNHY---KTEIASRCVELAEQFAPSNHWFIQTMNKV---FEHAGDLVNIKVAHNLMRLI 451 (969)
Q Consensus 382 ----Nv~~IV~eLl~yl~~~~D~~~---k~eli~~I~~laekyap~~~W~Id~L~~l---l~~~gd~v~~ev~~~li~lI 451 (969)
-+..|+..|.--++.- ...+ -..++.+|+..+-.|.+-.+|. .+...+ +..-...+.-. +....-.|
T Consensus 681 ~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWM-RIcfeLvd~Lks~nKeiRR~-A~~tfG~I 757 (975)
T COG5181 681 SMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWM-RICFELVDSLKSWNKEIRRN-ATETFGCI 757 (975)
T ss_pred ccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHH-HHHHHHHHHHHHhhHHHHHh-hhhhhhhH
Confidence 3556777777777641 2122 2446666666666788888884 222222 22111111110 01111223
Q ss_pred hcccCCCccccchhHHHHHHHHHHHHhCCC-CCchhHHHHHHHHhccccCCCCCCChHHHHHHHHHHHhhcCCcHHHHHH
Q 002083 452 AEGFGEDDDNADSQLRSSAVESYLRIIGEP-KLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAY 530 (969)
Q Consensus 452 ~~~~g~~~~~~~p~lr~~av~~l~~lL~d~-~~~e~l~~~i~WILGEY~~~~~~~~~~~Il~~L~~~~~~~~e~~~Vk~~ 530 (969)
++.+| |+ .++..|++-|+-. ......-.+++-|+|||+... .++..|..-++ .....||.-
T Consensus 758 s~aiG-------Pq---dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~--TPe~nVQnG 819 (975)
T COG5181 758 SRAIG-------PQ---DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYE--TPEANVQNG 819 (975)
T ss_pred HhhcC-------HH---HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch------hhHHHHHhccc--CchhHHHHh
Confidence 22222 22 1233333333211 111122335678899998632 24443332222 234578999
Q ss_pred HHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHhcCC
Q 002083 531 AITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLD 584 (969)
Q Consensus 531 ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~ 584 (969)
+|-|++-+|-+.-... .+..-.+..+|+..+.+.|+--||-|--..+=|.++
T Consensus 820 vLkam~fmFeyig~~s--~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 820 VLKAMCFMFEYIGQAS--LDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 9999998776532111 122223456778888899998899888877766553
No 52
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.06 E-value=0.023 Score=58.91 Aligned_cols=92 Identities=30% Similarity=0.343 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCC
Q 002083 158 KEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLP 237 (969)
Q Consensus 158 ~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp 237 (969)
+|.||..|+.++.-+...+|..++.+.+.+..+|.|.++.|...|+.+|..++..+.-.+++.+ +..++.-+.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l--~~~~l~~l~D---- 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQL--FSRILKLLVD---- 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhh--hHHHHHHHcC----
Confidence 5789999999999999999999999999999999999999999999999998877654444332 2344443322
Q ss_pred CCcCCCCCCChhHHHHHHHHHHHhCC
Q 002083 238 KSYDYHQMPAPFIQIRLLKILALLGS 263 (969)
Q Consensus 238 ~~y~y~~v~~PWlQikLLklL~~l~~ 263 (969)
++|..+-....+|..+..
T Consensus 75 --------~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 75 --------ENPEIRSLARSFFSELLK 92 (178)
T ss_pred --------CCHHHHHHHHHHHHHHHH
Confidence 356665555555555443
No 53
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.03 E-value=0.28 Score=57.70 Aligned_cols=273 Identities=14% Similarity=0.172 Sum_probs=148.1
Q ss_pred CChhHHHHHHHHHHHhCCCChH-----HHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHH-----HHH
Q 002083 246 PAPFIQIRLLKILALLGSGDKQ-----ASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIE-----SAA 315 (969)
Q Consensus 246 ~~PWlQikLLklL~~l~~~d~~-----~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~-----~ai 315 (969)
.+.|.+.+..++|+.+....+. ..+.+++.|...++..+ ....++-|++|+..+-..+.++. ..+
T Consensus 113 ~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~-----~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v 187 (429)
T cd00256 113 QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNIT-----NNDYVQTAARCLQMLLRVDEYRFAFVLADGV 187 (429)
T ss_pred CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccC-----CcchHHHHHHHHHHHhCCchHHHHHHHccCH
Confidence 3678999999999887533211 11224445555555321 12344556666655433333332 255
Q ss_pred HHHHHHhcCC--ChhHHHHHHHHHHHHHhhChhHHHH-----hHHhhccccCCC-chHHHHHHHHHhhcccCCC------
Q 002083 316 DVIARFLKSD--SHNLKYMGIDALGRLIKTSPEIAEQ-----HQLAVIDCLEDP-DDTLKRKTFELLYKMTKSS------ 381 (969)
Q Consensus 316 ~~L~~fL~s~--d~NlrYvaL~~L~~I~~~~P~l~~~-----h~~~I~~cL~D~-D~sIR~kaLdLL~~L~n~~------ 381 (969)
..|..+|... +..+.|-++-++-.+.-..+ .+.. ....+...+++. -+-|=|.++-+|..+.+..
T Consensus 188 ~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~ 266 (429)
T cd00256 188 PTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVK 266 (429)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchh
Confidence 6777777652 45889988888877764332 2211 112233333332 2345666777888888743
Q ss_pred --cHHHHHH-HHHHHHh-----hcCChhhHHHHHHHHHHHhhhc--CCchHHHH-HHHHHHHhhhCccchHHHHHHHHHH
Q 002083 382 --NVEVIVD-RMIDYMI-----SINDNHYKTEIASRCVELAEQF--APSNHWFI-QTMNKVFEHAGDLVNIKVAHNLMRL 450 (969)
Q Consensus 382 --Nv~~IV~-eLl~yl~-----~~~D~~~k~eli~~I~~laeky--ap~~~W~I-d~L~~ll~~~gd~v~~ev~~~li~l 450 (969)
....+|. .++..+. ...|+++..++-.---.+.+++ -.+++-|. ++....++=++-+.++..|..=..-
T Consensus 267 ~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~k 346 (429)
T cd00256 267 KTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADR 346 (429)
T ss_pred hhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHH
Confidence 2233333 4444433 2457776665543323333322 12344443 4444455444445455555432222
Q ss_pred HhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCCCChHHHHHHH------HHHHhhcCCc
Q 002083 451 IAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKL------CDVAEAYSND 524 (969)
Q Consensus 451 I~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~~~~~Il~~L------~~~~~~~~e~ 524 (969)
+.++ .-.++..|.++|+....+.. ++++|+=||||....+ ....+++.+ ..+++ .++
T Consensus 347 f~~~------------~~~llk~L~~iL~~s~d~~~-laVAc~Dige~vr~~P--~gr~i~~~lg~K~~vM~Lm~--h~d 409 (429)
T cd00256 347 LNEK------------NYELLKILIHLLETSVDPII-LAVACHDIGEYVRHYP--RGKDVVEQLGGKQRVMRLLN--HED 409 (429)
T ss_pred HHhc------------chHHHHHHHHHHhcCCCcce-eehhhhhHHHHHHHCc--cHHHHHHHcCcHHHHHHHhc--CCC
Confidence 3221 13467788899976555554 5788999999987532 123344332 11111 468
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002083 525 ETIKAYAITALMKIYAF 541 (969)
Q Consensus 525 ~~Vk~~ILtAl~KL~~~ 541 (969)
++||-..|.|+-|+..+
T Consensus 410 ~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 410 PNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999999764
No 54
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.7 Score=55.00 Aligned_cols=203 Identities=11% Similarity=0.200 Sum_probs=110.1
Q ss_pred chHHHHHHHHHHh-c------CCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhc-----cc
Q 002083 291 NAVLYECICCVSS-I------YANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVI-----DC 358 (969)
Q Consensus 291 ~AVlyEaik~I~~-l------~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~-----~c 358 (969)
.+|.+.+.+++.. + .....-+.-.....+..-.++|.+++..+.-+|.+|+..+=++++.|...-+ ..
T Consensus 192 ~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~ 271 (858)
T COG5215 192 SAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRF 271 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777766653 1 1111111112233344445678889999999999998877666655443322 23
Q ss_pred cCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcC--ChhhHHH----HHHHHHHHhhhc---CCchHHHHH---
Q 002083 359 LEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISIN--DNHYKTE----IASRCVELAEQF---APSNHWFIQ--- 426 (969)
Q Consensus 359 L~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~--D~~~k~e----li~~I~~laeky---ap~~~W~Id--- 426 (969)
.+.++..|+..|.|.-..+|.++|=..... +|+.++. +..|.+. ++--+..|-+|- +.+..|-+.
T Consensus 272 mks~nd~va~qavEfWsticeEeid~~~e~---~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 272 MKSQNDEVAIQAVEFWSTICEEEIDGEMED---KYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHhhhHHHH---hhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 467788999999999988998886544433 4554321 2234333 334445555552 234467764
Q ss_pred -HHHHHH-hhhCccchHHHHHHHHHHHhcc---------------cCCCccccchhHHHHHHHHHHHHhCCC-CCchh-H
Q 002083 427 -TMNKVF-EHAGDLVNIKVAHNLMRLIAEG---------------FGEDDDNADSQLRSSAVESYLRIIGEP-KLPSV-F 487 (969)
Q Consensus 427 -~L~~ll-~~~gd~v~~ev~~~li~lI~~~---------------~g~~~~~~~p~lr~~av~~l~~lL~d~-~~~e~-l 487 (969)
..+++| .+.||.+-.-|+. .|.++ ||.-....+...+.+.|...+.-|... ..+-. .
T Consensus 349 ~sCLqlfaq~~gd~i~~pVl~----FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v 424 (858)
T COG5215 349 SSCLQLFAQLKGDKIMRPVLG----FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV 424 (858)
T ss_pred HHHHHHHHHHhhhHhHHHHHH----HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence 345555 5667765444432 23222 222222223455666666555443321 11111 1
Q ss_pred HHHHHHHhccccC
Q 002083 488 LQVICWVLGEYGT 500 (969)
Q Consensus 488 ~~~i~WILGEY~~ 500 (969)
+...+|++|..++
T Consensus 425 k~ttAwc~g~iad 437 (858)
T COG5215 425 KSTTAWCFGAIAD 437 (858)
T ss_pred hhHHHHHHHHHHH
Confidence 3466899998775
No 55
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.00 E-value=0.35 Score=58.46 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=60.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHH
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVS 226 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~ 226 (969)
+..|..+.. .++-+++-|+--+.|+|+.+|++-+..++.+.++..|.|..|...|+..|-.+|+++++ +++.+..
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaD 99 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVAD 99 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHH
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHH
Confidence 344555555 46789999999999999999999999999999999999999999999999999988765 4566667
Q ss_pred HHHHH
Q 002083 227 ILKQV 231 (969)
Q Consensus 227 iLk~l 231 (969)
+|-|+
T Consensus 100 vL~Ql 104 (556)
T PF05918_consen 100 VLVQL 104 (556)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
No 56
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.52 Score=57.89 Aligned_cols=347 Identities=16% Similarity=0.185 Sum_probs=186.7
Q ss_pred HHHHHHHHHHcCCCCcch--HHHHHH----hhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHH
Q 002083 57 YIIRLVYVEMLGHDASFG--YIHAVK----MTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAA 130 (969)
Q Consensus 57 ~l~KLiyl~mlG~Dvsf~--~~~vIk----l~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralA 130 (969)
-+.||+|+++.-|-..+- ..-+++ =+.+.+...+-++--....+ .-..+.--+++-+++-++|.++++|-.|
T Consensus 64 elKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--~v~~i~ey~~~Pl~~~l~d~~~yvRkta 141 (734)
T KOG1061|consen 64 ELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL--RVDKITEYLCDPLLKCLKDDDPYVRKTA 141 (734)
T ss_pred hHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE--eehHHHHHHHHHHHHhccCCChhHHHHH
Confidence 467899999877755432 222333 23444544443332222211 1234555778899999999999999888
Q ss_pred HHHHHcc--cccchHh--hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc-----chhhHHHHHHHhhcCCChhHHHH
Q 002083 131 LNAVCKL--INEETIP--AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPS-----SVQHLVSNFRKRLCDNDPGVMGA 201 (969)
Q Consensus 131 Lr~Ls~I--~~~el~~--~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe-----~v~~l~~~l~~lL~D~D~~Vv~a 201 (969)
--++.++ ++++++. .+...++.++.|++|.|=-.|+-++.-|...+|+ ....++.++.+.|.+-+-.=...
T Consensus 142 a~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~ 221 (734)
T KOG1061|consen 142 AVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF 221 (734)
T ss_pred HHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH
Confidence 7777765 3455543 5778899999999999999999999999999985 22345555655554322221212
Q ss_pred HHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHH-HhH
Q 002083 202 TLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVG-DIF 280 (969)
Q Consensus 202 Al~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~-~iL 280 (969)
.+..+.+..+.+.....+++..+...|.. .++-.++..+|++..+...-+...+.+++-+. .++
T Consensus 222 IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh---------------~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~ 286 (734)
T KOG1061|consen 222 ILDCLAEYVPKDSREAEDICERLTPRLQH---------------ANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLV 286 (734)
T ss_pred HHHHHHhcCCCCchhHHHHHHHhhhhhcc---------------CCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccce
Confidence 22222222222221111222111111111 13334444555554433221111111111111 111
Q ss_pred hccCCCCCCCchHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhc-CCC-hhHHHHHHHHHHHHHhhChhHHHHhHHhhcc
Q 002083 281 RKCDSSSNIGNAVLYECICCVSSI-YANPKLIESAADVIARFLK-SDS-HNLKYMGIDALGRLIKTSPEIAEQHQLAVID 357 (969)
Q Consensus 281 ~~~~~~~Ni~~AVlyEaik~I~~l-~~~~~ll~~ai~~L~~fL~-s~d-~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~ 357 (969)
.-.+.. ..+.|=+.+-|..+ ...|+++. ..+..|+- -+| .=+|-.-|+++..++... -+.+-..++..
T Consensus 287 tlls~~----~e~qyvaLrNi~lil~~~p~~~~---~~~~~Ff~kynDPiYvK~eKleil~~la~~~--nl~qvl~El~e 357 (734)
T KOG1061|consen 287 TLLSSE----SEIQYVALRNINLILQKRPEILK---VEIKVFFCKYNDPIYVKLEKLEILIELANDA--NLAQVLAELKE 357 (734)
T ss_pred eeeccc----chhhHHHHhhHHHHHHhChHHHH---hHhHeeeeecCCchhhHHHHHHHHHHHhhHh--HHHHHHHHHHH
Confidence 111111 13444444433222 23344332 33445543 344 346777777777776543 22222222223
Q ss_pred ccCCCchHHHHHHHHHhhcccC-CCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q 002083 358 CLEDPDDTLKRKTFELLYKMTK-SSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNK 430 (969)
Q Consensus 358 cL~D~D~sIR~kaLdLL~~L~n-~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ 430 (969)
.-.+-|...-++++..+..++- -+-+...|..|++.++.-. .+...|.+.-|..+-.+|+...+-.+.++..
T Consensus 358 YatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~-~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~ 430 (734)
T KOG1061|consen 358 YATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKV-DYVVQEAIVVIRDILRKYPNKYESVVAILCE 430 (734)
T ss_pred hhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcc-cceeeehhHHHHhhhhcCCCchhhhhhhhcc
Confidence 3345678888898888887642 1222678899999887433 3678888888888888887655544444443
No 57
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.99 E-value=1.4 Score=52.82 Aligned_cols=258 Identities=14% Similarity=0.129 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhC--h-hHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCc
Q 002083 307 NPKLIESAADVIARFLKSDS-HNLKYMGIDALGRLIKTS--P-EIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSN 382 (969)
Q Consensus 307 ~~~ll~~ai~~L~~fL~s~d-~NlrYvaL~~L~~I~~~~--P-~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~N 382 (969)
+.+.+...+..+..++.... .+.--.+|..|-.++... | +-+... ..++.+.-.- ..+...+-+++-.|+....
T Consensus 170 ~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~-i~vLCsi~~~-~~l~~~~w~~m~nL~~S~~ 247 (464)
T PF11864_consen 170 DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPC-IEVLCSIVNS-VSLCKPSWRTMRNLLKSHL 247 (464)
T ss_pred CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHH-HHHHhhHhcc-cccchhHHHHHHHHHcCcc
Confidence 34555556666666654422 333344566666555422 3 222222 2222222111 2667778889999999999
Q ss_pred HHHHHHHHHHHHhhcC-----ChhhHHHHHHHHHHHhhhcC----Cc--h--HHHHHHHHHHHhhhCccchHHHHHHHHH
Q 002083 383 VEVIVDRMIDYMISIN-----DNHYKTEIASRCVELAEQFA----PS--N--HWFIQTMNKVFEHAGDLVNIKVAHNLMR 449 (969)
Q Consensus 383 v~~IV~eLl~yl~~~~-----D~~~k~eli~~I~~laekya----p~--~--~W~Id~L~~ll~~~gd~v~~ev~~~li~ 449 (969)
-...+..|.+.+.+.. +...-+-+|.-+..+.-++. |. . .-.+.-+...++.....|.-+|+..+-+
T Consensus 248 g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ 327 (464)
T PF11864_consen 248 GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINR 327 (464)
T ss_pred HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHH
Confidence 9999999999994321 12222344444444433331 11 1 2256666667776777777787776666
Q ss_pred HHhcccCCCccccchhHHHHHHHHHHHHhCCCCCch-------h----HHHHH-----HHHhccccCCCCCCChHHHHHH
Q 002083 450 LIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPS-------V----FLQVI-----CWVLGEYGTADGKVSASYITGK 513 (969)
Q Consensus 450 lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e-------~----l~~~i-----~WILGEY~~~~~~~~~~~Il~~ 513 (969)
++...++......+-..--.++..+.+.+.....+. . +...+ .|--|+|.. ..+.+++.
T Consensus 328 ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g-----~~~~~~~f 402 (464)
T PF11864_consen 328 LLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNG-----PKDKLFNF 402 (464)
T ss_pred HHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCc-----cHHHHHHH
Confidence 663333332211222222223333333333211111 0 11111 233344431 23445554
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHh-cCCChhHHhHHHHHH
Q 002083 514 LCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELS-ASHSTDLQQRAYELE 578 (969)
Q Consensus 514 L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l-~s~d~EVQqRA~Ey~ 578 (969)
+.+... +..++.+...| ..-.|.+ .| ...+|...+..+++.+. ...+.+||-+|.+..
T Consensus 403 ~~~~~~-~lp~s~~~~vl-~~~~~~~--~P---s~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l 461 (464)
T PF11864_consen 403 FERVHS-YLPDSSALLVL-FYEERSC--SP---SNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVL 461 (464)
T ss_pred HHHHhc-cCCHHHHHHHH-HHHhccc--CC---CChHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 443322 33344443333 1111111 11 12467888999999998 456789999998754
No 58
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=2.2 Score=54.39 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=83.9
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhccC-chHHHHHHHHHHhhhcCcc-----HHHHHHHHHHHH--cccccchHhhH
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNED-HDLIILIVNTIQKDLKSDN-----YLIVCAALNAVC--KLINEETIPAV 146 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~~~-~dlllL~iNtLqKDL~s~N-----~~vralALr~Ls--~I~~~el~~~l 146 (969)
..|....+.+.|...+--.-=.+....... .+++.-++-++.- +.++- -.--|+||--|+ .+.-+..++.+
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 334444555555543322222222222222 4555555544443 33321 133466666665 46778888899
Q ss_pred HHHHHHhcCC--------CChHHHHHHHHHHHHHHhhC-CcchhhHHHHHH-----HhhcCCChhHHHHHHHHHHHhhhh
Q 002083 147 LPQVVELLGH--------SKEAVRRKAIMALHRFYQKS-PSSVQHLVSNFR-----KRLCDNDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 147 ~~~V~~lL~d--------~~pyVRKkA~lal~kiy~~~-Pe~v~~l~~~l~-----~lL~D~D~~Vv~aAl~~L~ei~~~ 212 (969)
.|.|.+.|.- ....||-.|+..+--++|-| |+.++.++..+. ..+-|++..+..||.++|.|.+-.
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 9999888862 34579999999988888876 555555444333 345788889998998888887654
Q ss_pred Cc
Q 002083 213 DV 214 (969)
Q Consensus 213 ~p 214 (969)
.+
T Consensus 502 ~~ 503 (1133)
T KOG1943|consen 502 QG 503 (1133)
T ss_pred CC
Confidence 33
No 59
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.87 E-value=0.11 Score=58.84 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=55.2
Q ss_pred HHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCC
Q 002083 77 HAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGH 156 (969)
Q Consensus 77 ~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d 156 (969)
.+++++.+.+...|.-+..++..+-. .-++..+.+-|.+.++.+|..|..+|+.+.+++.++.+...+.. |
T Consensus 47 ~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~---d 117 (335)
T COG1413 47 ELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN---D 117 (335)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc---C
Confidence 34455555555555544444333211 13445555566666666666666666666666554444333332 5
Q ss_pred CChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhH
Q 002083 157 SKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGV 198 (969)
Q Consensus 157 ~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~V 198 (969)
.+.+||..|+.++.++..... +..+...++|.+..+
T Consensus 118 ~~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~~~~~~~ 153 (335)
T COG1413 118 ENEGVRAAAARALGKLGDERA------LDPLLEALQDEDSGS 153 (335)
T ss_pred CcHhHHHHHHHHHHhcCchhh------hHHHHHHhccchhhh
Confidence 666666666666665544322 333444455555544
No 60
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.79 E-value=0.11 Score=57.10 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=88.6
Q ss_pred CccHHHHHHHHHHHHcccccchHhhH------HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc--chhhHHHHHHHhh-
Q 002083 121 SDNYLIVCAALNAVCKLINEETIPAV------LPQVVELLGHSKEAVRRKAIMALHRFYQKSPS--SVQHLVSNFRKRL- 191 (969)
Q Consensus 121 s~N~~vralALr~Ls~I~~~el~~~l------~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe--~v~~l~~~l~~lL- 191 (969)
+.+|.++..|+-+|++...-...+.+ ++.|.++|.++++-||.+|+.|+..+---.+. .++..++.+.+.+
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 45799999999999987665555444 44688999999999999999999976544332 3445566555533
Q ss_pred cC-CChhHHHHHHHHHHHhhhhCc--hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC
Q 002083 192 CD-NDPGVMGATLCPLFDLITVDV--NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG 264 (969)
Q Consensus 192 ~D-~D~~Vv~aAl~~L~ei~~~~p--~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~ 264 (969)
.+ -|..|..+++.+|..+...+. ......++.|+.+|.. .+.-.|...||+|..++..
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~---------------G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSS---------------GSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHc---------------CChHHHHHHHHHHHHhccC
Confidence 32 477888899999988754332 1122334455554432 2566889999999999763
No 61
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.022 Score=71.92 Aligned_cols=91 Identities=24% Similarity=0.311 Sum_probs=71.7
Q ss_pred cCccHHHHHHHHHHHHcc--cccchHhhHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCCh
Q 002083 120 KSDNYLIVCAALNAVCKL--INEETIPAVLPQVVELLG-HSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDP 196 (969)
Q Consensus 120 ~s~N~~vralALr~Ls~I--~~~el~~~l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~ 196 (969)
...||.++..|-=+++++ ++.+.++.-+|.+...+. +++|.||-++++|+.-+.-.+|.+++.|.+.+.+.|.|.++
T Consensus 933 ~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~ 1012 (1251)
T KOG0414|consen 933 LFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESP 1012 (1251)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccH
Confidence 345677877777777764 466777777888888886 88888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhh
Q 002083 197 GVMGATLCPLFDLI 210 (969)
Q Consensus 197 ~Vv~aAl~~L~ei~ 210 (969)
.|.-.|+.+|..++
T Consensus 1013 ~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 1013 SVRKTALLVLSHLI 1026 (1251)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877665543
No 62
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.64 E-value=0.0087 Score=56.05 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=74.3
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHccccc------chHh-hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh---
Q 002083 112 VNTIQKDLKSDNYLIVCAALNAVCKLINE------ETIP-AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ--- 181 (969)
Q Consensus 112 iNtLqKDL~s~N~~vralALr~Ls~I~~~------el~~-~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~--- 181 (969)
++.+.+=|.++++.++..|+.+|+++... .+++ .+++.+.++|.++++.||+.|+.++..+....++...
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 44555556677788888888888877653 2233 6677888899999999999999999999987765332
Q ss_pred --hHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 182 --HLVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 182 --~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
.+++.+.+.|.+.|..+...++.+|..++
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 25777888888888888888887776654
No 63
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=1.1 Score=53.90 Aligned_cols=310 Identities=12% Similarity=0.119 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHH---HHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCc---hHHHHHHHHHHhhhcCccH--
Q 002083 53 KMKEYIIRLVYV---EMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDH---DLIILIVNTIQKDLKSDNY-- 124 (969)
Q Consensus 53 ~~ke~l~KLiyl---~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~---dlllL~iNtLqKDL~s~N~-- 124 (969)
..++++.+++-= ...|.+.+.......+++.+.++..++-+=-.+.-+.+... +.=...+-++.+-.++.+.
T Consensus 111 ~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~ 190 (569)
T KOG1242|consen 111 SVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSAL 190 (569)
T ss_pred HHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhh
Confidence 344555554432 23566666777778888888888765544444444444321 1112334445554554433
Q ss_pred --HHHHHHHHHHHc----ccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-CcchhhHHHHHHH-hhcCCCh
Q 002083 125 --LIVCAALNAVCK----LINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKS-PSSVQHLVSNFRK-RLCDNDP 196 (969)
Q Consensus 125 --~vralALr~Ls~----I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~-Pe~v~~l~~~l~~-lL~D~D~ 196 (969)
...++|..+.+. ...|.++ .++|.|..+..|..+.||..|..|+--+.+.. +..++.+++.+.. ++.+.-.
T Consensus 191 ~re~~~~a~~~~~~~Lg~~~EPyiv-~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWr 269 (569)
T KOG1242|consen 191 NREAALLAFEAAQGNLGPPFEPYIV-PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWR 269 (569)
T ss_pred cHHHHHHHHHHHHHhcCCCCCchHH-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhh
Confidence 233444444433 3334433 46788899999999999999999988877754 4455554444333 3333222
Q ss_pred hHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC--ChHHHhhhHH
Q 002083 197 GVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG--DKQASENMYT 274 (969)
Q Consensus 197 ~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~--d~~~se~l~~ 274 (969)
.- .+++-++--+....|.......|.++..|.+++. | ..|=.+-.-.+.+..|+.. ++. ...+++
T Consensus 270 tK-~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~-------D----T~~evr~a~~~~l~~~~svidN~d-I~~~ip 336 (569)
T KOG1242|consen 270 TK-MASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW-------D----TKPEVRKAGIETLLKFGSVIDNPD-IQKIIP 336 (569)
T ss_pred hH-HHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc-------c----CCHHHHHHHHHHHHHHHHhhccHH-HHHHHH
Confidence 21 1233333323333343322233334443333321 1 1344444455555555532 111 223333
Q ss_pred HHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHh
Q 002083 275 VVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLA 354 (969)
Q Consensus 275 iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~ 354 (969)
.|.+.+... . .-.-||+..+..- +|+.. +--.+|..|.-|+
T Consensus 337 ~Lld~l~dp--~-----~~~~e~~~~L~~t---------------tFV~~----V~~psLalmvpiL------------- 377 (569)
T KOG1242|consen 337 TLLDALADP--S-----CYTPECLDSLGAT---------------TFVAE----VDAPSLALMVPIL------------- 377 (569)
T ss_pred HHHHHhcCc--c-----cchHHHHHhhcce---------------eeeee----ecchhHHHHHHHH-------------
Confidence 333333321 0 1123444333210 11111 0001222222222
Q ss_pred hccccCCCchHHHHHHHHHhhc---cc-CCCcHHHHHHHHHHHHhhc---CChhhHHHHHHHHHHHhhh
Q 002083 355 VIDCLEDPDDTLKRKTFELLYK---MT-KSSNVEVIVDRMIDYMISI---NDNHYKTEIASRCVELAEQ 416 (969)
Q Consensus 355 I~~cL~D~D~sIR~kaLdLL~~---L~-n~~Nv~~IV~eLl~yl~~~---~D~~~k~eli~~I~~laek 416 (969)
-+-+.+.+..+||++..+.-. ++ ++..+...+.+|+.=+... .+++.|....++++.+-++
T Consensus 378 -~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 378 -KRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred -HHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 123455667788876655544 44 6777777777777655432 3578888888888766654
No 64
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.39 Score=58.28 Aligned_cols=274 Identities=17% Similarity=0.215 Sum_probs=138.2
Q ss_pred hhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHH----HHHHHhcC-CCChHHHHHHHHHHHHHH
Q 002083 99 LFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVL----PQVVELLG-HSKEAVRRKAIMALHRFY 173 (969)
Q Consensus 99 ~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~----~~V~~lL~-d~~pyVRKkA~lal~kiy 173 (969)
..+++.++++.-++|.|-+-|++...-+|=+||..||.+++.+-..+.. ..|...|+ ..+.-|||+|+--+|-|.
T Consensus 318 ~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 318 IHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred HHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 3457788999999999999999999999999999999998876654433 34666676 778889999999999887
Q ss_pred hhCCcchhhHHHHHHHhhcCCChhHHH---HHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhH
Q 002083 174 QKSPSSVQHLVSNFRKRLCDNDPGVMG---ATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFI 250 (969)
Q Consensus 174 ~~~Pe~v~~l~~~l~~lL~D~D~~Vv~---aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWl 250 (969)
.... .+.+++.+..-|..-|++... .-++.|.|-...+...|-+.+-.++++--..+ .| .=|-
T Consensus 398 D~~N--ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~v-----sd-------eVW~ 463 (938)
T KOG1077|consen 398 DVSN--AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYV-----SD-------EVWY 463 (938)
T ss_pred chhh--HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccc-----cH-------HHHH
Confidence 6542 333333333333333443321 11222333333344444444333333321111 00 1132
Q ss_pred HHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCC---CchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCh
Q 002083 251 QIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNI---GNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSH 327 (969)
Q Consensus 251 QikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni---~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~ 327 (969)
+ +++++..-........+.+++.| ++--.+.|+ |-=|+=|--++|.. ++...-.. -...|..-+...++
T Consensus 464 R--vvQiVvNnedlq~yaak~~fe~L----q~~a~hE~mVKvggyiLGEfg~LIa~-~prss~~~-qFsllh~K~~~~s~ 535 (938)
T KOG1077|consen 464 R--VVQIVVNNEDLQGYAAKRLFEYL----QKPACHENMVKVGGYILGEFGNLIAD-DPRSSPAV-QFSLLHEKLHLCSP 535 (938)
T ss_pred H--hheeEecchhhhHHHHHHHHHHH----hhhHHHHHHHHhhhhhhhhhhhhhcC-CCCCChHH-HHHHHHHHhccCCh
Confidence 1 11111000000000112222222 110000000 00000111111110 00000000 01222232334557
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhc--ccCCCcHHHHHHHHHHHH
Q 002083 328 NLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYK--MTKSSNVEVIVDRMIDYM 394 (969)
Q Consensus 328 NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~--L~n~~Nv~~IV~eLl~yl 394 (969)
-.|-+-|..+.+++...|++=..-+..|-.-.+-.|..+..||.|-|-- ++..+-...+++||-.|.
T Consensus 536 ~tr~lLLtTyiKl~nl~PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~ 604 (938)
T KOG1077|consen 536 VTRALLLTTYIKLINLFPEIKSNVQKVFQLYSNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFP 604 (938)
T ss_pred hHHHHHHHHHHHHHhhChhhhHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCc
Confidence 7888999999999999998755444433333444789999999887643 343344444555444333
No 65
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=2.3 Score=52.01 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=71.2
Q ss_pred cchHHHHHHhhcCCCcchhHHHHHHHHhhhcc----CchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccch---Hh
Q 002083 72 SFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNE----DHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEET---IP 144 (969)
Q Consensus 72 sf~~~~vIkl~sS~~~~~KRlgYLals~~~~~----~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el---~~ 144 (969)
...|-|+++-..+++-..|.-+..-+..+.++ +.+++-.+.-.+.+-+.|..|.||--|+-+||++...+. ++
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~ 163 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP 163 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc
Confidence 45678899999998887777777777766664 445666666677777889999999999999999873222 22
Q ss_pred hHHHHHHHhc-CCCChHHHHHHHHHHH
Q 002083 145 AVLPQVVELL-GHSKEAVRRKAIMALH 170 (969)
Q Consensus 145 ~l~~~V~~lL-~d~~pyVRKkA~lal~ 170 (969)
+....+.++ +|+++-||+.|+.++.
T Consensus 164 -v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 164 -VVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -HHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 233334444 5899999999988765
No 66
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.88 Score=56.42 Aligned_cols=246 Identities=14% Similarity=0.198 Sum_probs=134.3
Q ss_pred cchHhhHHHHHHHhcC-CCChHHHHHHHHHHHHHHhh--------------------CCc---chhhHHHHHHHhhcCCC
Q 002083 140 EETIPAVLPQVVELLG-HSKEAVRRKAIMALHRFYQK--------------------SPS---SVQHLVSNFRKRLCDND 195 (969)
Q Consensus 140 ~el~~~l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~--------------------~Pe---~v~~l~~~l~~lL~D~D 195 (969)
-++++..+..++++-+ |+....|--|+++++.++.. .|| .+-+.++.|..+|.-.|
T Consensus 269 iDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D 348 (1051)
T KOG0168|consen 269 IDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQD 348 (1051)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhcc
Confidence 3455555555555543 56655555555554443332 233 23356777778886555
Q ss_pred hhHHHHHHHHHHHh---hhhCchhhHHHH-HHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh
Q 002083 196 PGVMGATLCPLFDL---ITVDVNSYKDLV-ISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN 271 (969)
Q Consensus 196 ~~Vv~aAl~~L~ei---~~~~p~~~~~Lv-~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~ 271 (969)
--++-.+...|+.+ ..+.|+.+.+|+ +.|++...+++.-. |. +-+.=.-+-++++|...+.+.+-..+.
T Consensus 349 ~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt-~t------~Ls~~~~~~vIrmls~msS~~pl~~~t 421 (1051)
T KOG0168|consen 349 KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT-PT------ILSNGTYTGVIRMLSLMSSGSPLLFRT 421 (1051)
T ss_pred chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC-cc------cccccchhHHHHHHHHHccCChHHHHH
Confidence 54443333223333 345677777776 45666666655321 11 112223456788898888877755544
Q ss_pred h-----HHHHHHhHhccCCCCCC--------CchHHHHHHHHHHhcCCCHHHH-HHHH----------------------
Q 002083 272 M-----YTVVGDIFRKCDSSSNI--------GNAVLYECICCVSSIYANPKLI-ESAA---------------------- 315 (969)
Q Consensus 272 l-----~~iL~~iL~~~~~~~Ni--------~~AVlyEaik~I~~l~~~~~ll-~~ai---------------------- 315 (969)
+ -+.|..+|.....+.|+ .++=+||.+..|+.+.+-...- -.|+
T Consensus 422 l~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~ 501 (1051)
T KOG0168|consen 422 LLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDD 501 (1051)
T ss_pred HHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccc
Confidence 3 34566777654433333 2456788888887654321100 0011
Q ss_pred --------HHHHHHhcC--CCh-----hHHHHHHHHHHHHHhhChhHHHHhHHhhcccc-----CCCchHHHHHHHHHhh
Q 002083 316 --------DVIARFLKS--DSH-----NLKYMGIDALGRLIKTSPEIAEQHQLAVIDCL-----EDPDDTLKRKTFELLY 375 (969)
Q Consensus 316 --------~~L~~fL~s--~d~-----NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL-----~D~D~sIR~kaLdLL~ 375 (969)
+...+.+.. .|+ .-+-+.+..=..++...|++++++...+|..| +..+++||.+.|..|.
T Consensus 502 ~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ail 581 (1051)
T KOG0168|consen 502 RGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAIL 581 (1051)
T ss_pred cccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHH
Confidence 111122210 000 00111123333556677888888776665544 3557899999999999
Q ss_pred cccCCCcHHHHHHHHHH
Q 002083 376 KMTKSSNVEVIVDRMID 392 (969)
Q Consensus 376 ~L~n~~Nv~~IV~eLl~ 392 (969)
+|+-=.|.+.|..-|.+
T Consensus 582 rlvy~s~seli~slLk~ 598 (1051)
T KOG0168|consen 582 RLVYFSNSELIGSLLKN 598 (1051)
T ss_pred HHHhhCCHHHHHHHHhc
Confidence 99988888777665543
No 67
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=0.014 Score=73.66 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=110.0
Q ss_pred hHHHHHHhhc----CCCcchhHHHHHHHHhhhccCchHH----HHHHHHHHhhhcCccHHHHHHHHHHHHc--ccccchH
Q 002083 74 GYIHAVKMTH----DDNLVLKRTGYLAVTLFLNEDHDLI----ILIVNTIQKDLKSDNYLIVCAALNAVCK--LINEETI 143 (969)
Q Consensus 74 ~~~~vIkl~s----S~~~~~KRlgYLals~~~~~~~dll----lL~iNtLqKDL~s~N~~vralALr~Ls~--I~~~el~ 143 (969)
+-+=|++.+. .+|..+.+.+||++..+.--+.+.. -+.++.+- ++|+|.+||.+.-++|. ++-|.++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftime---ksp~p~IRsN~VvalgDlav~fpnli 996 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIME---KSPSPRIRSNLVVALGDLAVRFPNLI 996 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---cCCCceeeecchheccchhhhccccc
Confidence 3455677773 4566788999999987765544332 23333333 38999999999888886 5678999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHH
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVIS 223 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~ 223 (969)
+...+.+.+.|.|.++.|||.|++.+.++...+-=-++..+.++..+|+|.++.+-.-|=..|.|+..+. +..-.|.|.
T Consensus 997 e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPd 1075 (1251)
T KOG0414|consen 997 EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPD 1075 (1251)
T ss_pred chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchH
Confidence 9999999999999999999999999999888664445567788888999999998776666677776443 333344444
Q ss_pred HHHH
Q 002083 224 FVSI 227 (969)
Q Consensus 224 lv~i 227 (969)
++..
T Consensus 1076 il~~ 1079 (1251)
T KOG0414|consen 1076 ILSR 1079 (1251)
T ss_pred HHHh
Confidence 3333
No 68
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.41 E-value=2.8 Score=48.73 Aligned_cols=365 Identities=16% Similarity=0.176 Sum_probs=182.8
Q ss_pred cCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHH
Q 002083 120 KSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVM 199 (969)
Q Consensus 120 ~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv 199 (969)
...|+-.+..-+.-|+.+..++.+++++..|-++|...+..++ +.+.|...+... -...+..+|.+.|...+
T Consensus 60 ~~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k~~--~~~~fl~ll~r~d~~iv 131 (442)
T KOG2759|consen 60 SANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLKRT--EWLSFLNLLNRQDTFIV 131 (442)
T ss_pred hcccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhhcc--chHHHHHHHhcCChHHH
Confidence 3445566677788889999999999999999999876543332 444444433221 13445567777787766
Q ss_pred HHHHHHHHHhhhhCchhh-HHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhh----HH
Q 002083 200 GATLCPLFDLITVDVNSY-KDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENM----YT 274 (969)
Q Consensus 200 ~aAl~~L~ei~~~~p~~~-~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l----~~ 274 (969)
.-+..++..+..-..... ..-...+.+.|+.......+.+|. .-..++|+.+-+.++-...-. ..
T Consensus 132 ~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~----------~~~~rcLQ~ll~~~eyR~~~v~adg~~ 201 (442)
T KOG2759|consen 132 EMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYI----------QFAARCLQTLLRVDEYRYAFVIADGVS 201 (442)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchH----------HHHHHHHHHHhcCcchhheeeecCcch
Confidence 533333322222111000 001122344455444433333332 123455555444332211111 13
Q ss_pred HHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC-h-hHHHHhH
Q 002083 275 VVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS-P-EIAEQHQ 352 (969)
Q Consensus 275 iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~-P-~l~~~h~ 352 (969)
+|..++-++ . .|.-+.|+.+-||..+.-++.+.+.+ . +| =.+..|..|++.. . ++..-..
T Consensus 202 ~l~~~l~s~--~--~~~QlQYqsifciWlLtFn~~~ae~~-~---~~----------~li~~L~~Ivk~~~KEKV~Rivl 263 (442)
T KOG2759|consen 202 LLIRILAST--K--CGFQLQYQSIFCIWLLTFNPHAAEKL-K---RF----------DLIQDLSDIVKESTKEKVTRIVL 263 (442)
T ss_pred hhHHHHhcc--C--cchhHHHHHHHHHHHhhcCHHHHHHH-h---hc----------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444311 1 24579999999999888777654422 1 10 1122333333322 1 1222222
Q ss_pred HhhccccCCC-chHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHh---hhcCCchHHHHHHH
Q 002083 353 LAVIDCLEDP-DDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELA---EQFAPSNHWFIQTM 428 (969)
Q Consensus 353 ~~I~~cL~D~-D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~la---ekyap~~~W~Id~L 428 (969)
..|..|++-. |.+.|+.+.-. |... ++-..++-|.+- ..+|+++..++-.--..+- ..++...++.-++.
T Consensus 264 ai~~Nll~k~~~~~~~k~~~~~---mv~~-~v~k~l~~L~~r--kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~ 337 (442)
T KOG2759|consen 264 AIFRNLLDKGPDRETKKDIASQ---MVLC-KVLKTLQSLEER--KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELR 337 (442)
T ss_pred HHHHHHhccCchhhHHHHHHHH---HHhc-CchHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3445566544 55666543221 1111 233333333321 2456665554432211222 22232224444555
Q ss_pred HHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCCCChH
Q 002083 429 NKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSAS 508 (969)
Q Consensus 429 ~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~~~~ 508 (969)
...+.=++-+..+..|+.=++-+.+ -+-.++..|.++|+....|.. ++++|.=||||...-+. ..
T Consensus 338 sG~L~WSP~Hk~e~FW~eNa~rlne------------nnyellkiL~~lLe~s~Dp~i-L~VAc~DIge~Vr~yP~--gk 402 (442)
T KOG2759|consen 338 SGRLEWSPVHKSEKFWRENADRLNE------------NNYELLKILIKLLETSNDPII-LCVACHDIGEYVRHYPE--GK 402 (442)
T ss_pred hCCcCCCccccccchHHHhHHHHhh------------ccHHHHHHHHHHHhcCCCCce-eehhhhhHHHHHHhCch--Hh
Confidence 5555556666666666543333322 123567788889987766654 57889999999865321 12
Q ss_pred HHHHHHH---HHHhh-cCCcHHHHHHHHHHHHHHHHH
Q 002083 509 YITGKLC---DVAEA-YSNDETIKAYAITALMKIYAF 541 (969)
Q Consensus 509 ~Il~~L~---~~~~~-~~e~~~Vk~~ILtAl~KL~~~ 541 (969)
.+++.+- .+++- ..++++||--.|.|+=|+..+
T Consensus 403 ~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 403 AVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 3333221 11111 146788998888888887653
No 69
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.29 E-value=0.31 Score=53.68 Aligned_cols=173 Identities=15% Similarity=0.173 Sum_probs=109.6
Q ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHHhhCC---cchhh--HHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch--hhHH
Q 002083 148 PQVVELLG-HSKEAVRRKAIMALHRFYQKSP---SSVQH--LVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN--SYKD 219 (969)
Q Consensus 148 ~~V~~lL~-d~~pyVRKkA~lal~kiy~~~P---e~v~~--l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~--~~~~ 219 (969)
..+..+|. ..+|+++.+|..++...- -+| +.+.+ .++.+..+|.+.++.|...|++++..+.....+ ..+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 44555665 568999999999999853 333 34443 578889999999999999999988776543322 2222
Q ss_pred HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHH---HhHhccCCCCCCCchHHHH
Q 002083 220 LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVG---DIFRKCDSSSNIGNAVLYE 296 (969)
Q Consensus 220 Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~---~iL~~~~~~~Ni~~AVlyE 296 (969)
. +-.+++.++.. -.+-..|..-||+|..+...+.. ...+.+.+. .+|... | .-+-+.
T Consensus 94 ~---i~~Vc~~~~s~----------~lns~~Q~agLrlL~nLtv~~~~-~~~l~~~i~~ll~LL~~G----~--~~~k~~ 153 (254)
T PF04826_consen 94 Y---IPQVCEETVSS----------PLNSEVQLAGLRLLTNLTVTNDY-HHMLANYIPDLLSLLSSG----S--EKTKVQ 153 (254)
T ss_pred H---HHHHHHHHhcC----------CCCCHHHHHHHHHHHccCCCcch-hhhHHhhHHHHHHHHHcC----C--hHHHHH
Confidence 2 33444444321 12557899999999999765422 122223333 344432 2 247789
Q ss_pred HHHHHHhcCCCHHHHHH-----HHHHHHHHhcCC-ChhHHHHHHHHHHHHH
Q 002083 297 CICCVSSIYANPKLIES-----AADVIARFLKSD-SHNLKYMGIDALGRLI 341 (969)
Q Consensus 297 aik~I~~l~~~~~ll~~-----ai~~L~~fL~s~-d~NlrYvaL~~L~~I~ 341 (969)
+.++++++..++.+.+. +...+..++..+ +.++-.-+|..+..|.
T Consensus 154 vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 154 VLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred HHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 99999999998876543 334555556554 4566666666665554
No 70
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.27 E-value=0.031 Score=52.24 Aligned_cols=69 Identities=29% Similarity=0.311 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
+++.+.++|.+.++.+|+.|+.|+..+....|+... ..++.+.++|.|.|+.|...|+.+|..++...+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 677788899999999999999999999988766543 467888899999999999999999999987654
No 71
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=4.7 Score=49.85 Aligned_cols=241 Identities=12% Similarity=0.191 Sum_probs=127.7
Q ss_pred HHHHHHHHHhCCC-ChHH-HhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHh
Q 002083 252 IRLLKILALLGSG-DKQA-SENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSI-------YANPKLIESAADVIARFL 322 (969)
Q Consensus 252 ikLLklL~~l~~~-d~~~-se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l-------~~~~~ll~~ai~~L~~fL 322 (969)
-..|.-+.++|.. +|+. .++-.++|..+++-.... -.+..|.+.+.++++.- ..+..=+.-.....+.--
T Consensus 148 ~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~-e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat 226 (859)
T KOG1241|consen 148 ESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKE-ETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT 226 (859)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhcccc-CCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc
Confidence 3456666666643 4432 233456777776633211 11247888888887641 111111111222334444
Q ss_pred cCCChhHHHHHHHHHHHHHhhChhHHHHhHHh-h----ccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhc
Q 002083 323 KSDSHNLKYMGIDALGRLIKTSPEIAEQHQLA-V----IDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISI 397 (969)
Q Consensus 323 ~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~-I----~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~ 397 (969)
.++|..++-.++.+|.+|+..+=++...|... + +...++++..|+..++|.=..+|.+++ .|.-|.-+.....
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEi--D~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEI--DLAIEYGEAVDQG 304 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcC
Confidence 57889999999999999998886666665443 2 223356778999999999999999884 3444554444433
Q ss_pred CC---hhhHHHHHH----HHHHHhhhc---CCchHHHHH----HHHHHH-hhhCccchHHHHHHHHHHHhcccCCCc---
Q 002083 398 ND---NHYKTEIAS----RCVELAEQF---APSNHWFIQ----TMNKVF-EHAGDLVNIKVAHNLMRLIAEGFGEDD--- 459 (969)
Q Consensus 398 ~D---~~~k~eli~----~I~~laeky---ap~~~W~Id----~L~~ll-~~~gd~v~~ev~~~li~lI~~~~g~~~--- 459 (969)
.+ ..|.+..+. -+.++-.|- ..+..|-+- +.+.++ +..||.+-+ .++-.|.+++.+.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~----~Vl~Fiee~i~~pdwr~ 380 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP----HVLPFIEENIQNPDWRN 380 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh----hhHHHHHHhcCCcchhh
Confidence 33 234333332 233443342 234468764 334444 344554433 44445554432221
Q ss_pred ------------cccchhHHHHH----HHHHHHHhCCCCCchhHHHHHHHHhccccCC
Q 002083 460 ------------DNADSQLRSSA----VESYLRIIGEPKLPSVFLQVICWVLGEYGTA 501 (969)
Q Consensus 460 ------------~~~~p~lr~~a----v~~l~~lL~d~~~~e~l~~~i~WILGEY~~~ 501 (969)
+..++...... +..++.++.|+... .+.+.+|.+|--++.
T Consensus 381 reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~--VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW--VKDTAAWTLGRIADF 436 (859)
T ss_pred hhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh--hcchHHHHHHHHHhh
Confidence 11122222222 22333334443321 235789999988764
No 72
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.22 E-value=2.2 Score=51.70 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=62.9
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhc
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELL 154 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL 154 (969)
|-.++.... .+...||++--++..|+..-|++.--++| .+.+++
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~-----------------------------------a~~DLc 68 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAIN-----------------------------------AQLDLC 68 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHH-----------------------------------HHHHHH
Confidence 344444444 35667777777777776666665544444 445555
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchh
Q 002083 155 GHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNS 216 (969)
Q Consensus 155 ~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~ 216 (969)
.|.+.-||+.|+-.|..+++-+|+.+..+.+.|..+|...|+..+.++=.+|.++.+.+|+.
T Consensus 69 EDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~ 130 (556)
T PF05918_consen 69 EDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG 130 (556)
T ss_dssp T-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH
T ss_pred hcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH
Confidence 56666777777777777788888888888888888888777777766666777777777753
No 73
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.08 E-value=0.4 Score=54.25 Aligned_cols=211 Identities=21% Similarity=0.248 Sum_probs=138.8
Q ss_pred HHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHH
Q 002083 110 LIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRK 189 (969)
Q Consensus 110 L~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~ 189 (969)
.....+.+.+.++++.+|..|...++.+...+ ..+.+.+++.+.++.||..|+.++.++- +|+.++.++..+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~----av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~a~~~li~~l~~ 116 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEE----AVPLLRELLSDEDPRVRDAAADALGELG--DPEAVPPLVELLEN 116 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHH----HHHHHHHHhcCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHHc
Confidence 46778889999999999999999998887765 4567789999999999999999887653 35555444433333
Q ss_pred hhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHH
Q 002083 190 RLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQAS 269 (969)
Q Consensus 190 lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~s 269 (969)
|.|..|...+..+|..+-..+ .+..+++++..-. .+.+...+ +.
T Consensus 117 ---d~~~~vR~~aa~aL~~~~~~~------a~~~l~~~l~~~~---------------~~~a~~~~---------~~--- 160 (335)
T COG1413 117 ---DENEGVRAAAARALGKLGDER------ALDPLLEALQDED---------------SGSAAAAL---------DA--- 160 (335)
T ss_pred ---CCcHhHHHHHHHHHHhcCchh------hhHHHHHHhccch---------------hhhhhhhc---------cc---
Confidence 899999998888876653221 1233344433210 00000000 00
Q ss_pred hhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHH
Q 002083 270 ENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAE 349 (969)
Q Consensus 270 e~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~ 349 (969)
.+ ..+.+.++..+..+.. + .+...+..++.+.+..+|.-+...|..+...+..+.
T Consensus 161 -----~~--------------~~~r~~a~~~l~~~~~-~----~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~- 215 (335)
T COG1413 161 -----AL--------------LDVRAAAAEALGELGD-P----EAIPLLIELLEDEDADVRRAAASALGQLGSENVEAA- 215 (335)
T ss_pred -----hH--------------HHHHHHHHHHHHHcCC-h----hhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHH-
Confidence 00 0234445544443332 1 245667778887778899999999998887652222
Q ss_pred HhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHH
Q 002083 350 QHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRM 390 (969)
Q Consensus 350 ~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eL 390 (969)
..|+..+.|++..+|.+++..|..+-.++.+..++..+
T Consensus 216 ---~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~l 253 (335)
T COG1413 216 ---DLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKAL 253 (335)
T ss_pred ---HHHHHHhcCCCHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 45566788999999999999999988887666554433
No 74
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.52 Score=61.45 Aligned_cols=211 Identities=20% Similarity=0.256 Sum_probs=124.4
Q ss_pred HHHcccccchHhhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhCCcchh----hHHHHHHHhhcCCChhHHHHHHHHHH
Q 002083 133 AVCKLINEETIPAVLPQVVELLGHS-KEAVRRKAIMALHRFYQKSPSSVQ----HLVSNFRKRLCDNDPGVMGATLCPLF 207 (969)
Q Consensus 133 ~Ls~I~~~el~~~l~~~V~~lL~d~-~pyVRKkA~lal~kiy~~~Pe~v~----~l~~~l~~lL~D~D~~Vv~aAl~~L~ 207 (969)
-||++.+.---|+++-.-.++.+|. .-.-||-|+.++..|....-+.++ .++|++.+-=.|.|+.|..+.... .
T Consensus 944 ELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sI-W 1022 (1702)
T KOG0915|consen 944 ELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSI-W 1022 (1702)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHH-H
Confidence 3444443333344555556777775 456789999999999988766554 567777777789999998875544 4
Q ss_pred HhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHH---HHHHHHHhC-CCChHHHhhhHHHHHHhHhcc
Q 002083 208 DLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIR---LLKILALLG-SGDKQASENMYTVVGDIFRKC 283 (969)
Q Consensus 208 ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQik---LLklL~~l~-~~d~~~se~l~~iL~~iL~~~ 283 (969)
..+-.+++...+ .++-+||++++.+--.+ +|= ++ .|-+...+. +...+..++|.++....+|-.
T Consensus 1023 ~~Li~D~k~~vd--~y~neIl~eLL~~lt~k---------ewR-VReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvm 1090 (1702)
T KOG0915|consen 1023 NALITDSKKVVD--EYLNEILDELLVNLTSK---------EWR-VREASCLALADLLQGRPFDQVKEKLPELWEAAFRVM 1090 (1702)
T ss_pred HHhccChHHHHH--HHHHHHHHHHHHhccch---------hHH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 444344432211 23456777765443333 442 22 222222222 333445667777777777654
Q ss_pred CCCCCCCchHHHHH---HHHHHhc-----C-CCHHHHHHHHHHHHHHhc-----CCChhHHHHHHHHHHHHHhhChhHHH
Q 002083 284 DSSSNIGNAVLYEC---ICCVSSI-----Y-ANPKLIESAADVIARFLK-----SDSHNLKYMGIDALGRLIKTSPEIAE 349 (969)
Q Consensus 284 ~~~~Ni~~AVlyEa---ik~I~~l-----~-~~~~ll~~ai~~L~~fL~-----s~d~NlrYvaL~~L~~I~~~~P~l~~ 349 (969)
|- +..+|.-.+ ++++.++ + .++.--+.+.+.+.-||- |+=+++|-++|..+..|++..+..+.
T Consensus 1091 DD---IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1091 DD---IKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc
Confidence 32 122332222 2222221 1 223223345566666654 44589999999999999999999999
Q ss_pred HhHHhhcccc
Q 002083 350 QHQLAVIDCL 359 (969)
Q Consensus 350 ~h~~~I~~cL 359 (969)
+|..+++.||
T Consensus 1168 P~~~~LIp~l 1177 (1702)
T KOG0915|consen 1168 PHFPKLIPLL 1177 (1702)
T ss_pred chhhHHHHHH
Confidence 8888777766
No 75
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.04 E-value=1.7 Score=54.54 Aligned_cols=413 Identities=15% Similarity=0.167 Sum_probs=192.6
Q ss_pred cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh--hHHHHHHHhhcCCChhHHHHHHHHHHHhhh--hCc-
Q 002083 140 EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ--HLVSNFRKRLCDNDPGVMGATLCPLFDLIT--VDV- 214 (969)
Q Consensus 140 ~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~--~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~--~~p- 214 (969)
..+-..+.+.+..+..|..|.||+.++--+..+-+.-+.... .+.+.+..++.|..-+|..+|+..+..+.. +.+
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 334455666777788899999999999999888887766432 467888899999989999998887665543 222
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHH
Q 002083 215 NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVL 294 (969)
Q Consensus 215 ~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVl 294 (969)
+.++.+.+.+++....-. ..+. +-.......+-..+++ +... -.........+..+....+...|--
T Consensus 312 d~~~~~~~~l~~~~~d~~-----~~v~------~~~~~~~~~L~~~~~~-~~~~-~~~~~~~~~l~~~~~~e~r~a~a~~ 378 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGS-----WRVS------YMVADKFSELSSAVGP-SATR-TQLVPPVSNLLKDEEWEVRYAIAKK 378 (759)
T ss_pred hhhhhhhHHHHHHhcChh-----HHHH------HHHhhhhhhHHHHhcc-ccCc-ccchhhHHHHhcchhhhhhHHhhcc
Confidence 444555555555443210 0000 0011111222222333 1100 0111112222222211111100100
Q ss_pred HHHHHHHHhcCCCHHHHHH-HHHHHHHHhcCCChhHHHHHHHHHHHHHhhC--hhHHHHhHHhhccccCCCchHHHHHHH
Q 002083 295 YECICCVSSIYANPKLIES-AADVIARFLKSDSHNLKYMGIDALGRLIKTS--PEIAEQHQLAVIDCLEDPDDTLKRKTF 371 (969)
Q Consensus 295 yEaik~I~~l~~~~~ll~~-ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~--P~l~~~h~~~I~~cL~D~D~sIR~kaL 371 (969)
..=..++.....-+++... +...+.-|+.+.+.-+|-.....+.-+.... +..+......++..++|.++.+|...+
T Consensus 379 ~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli 458 (759)
T KOG0211|consen 379 VQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLI 458 (759)
T ss_pred hHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhH
Confidence 0000011110000111111 1233333444333333333222222222221 122333334445567777777777766
Q ss_pred HHh---hcccCCCcHHHHHHHHHHHHhhc-CC--hhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhh-hCc---cchH
Q 002083 372 ELL---YKMTKSSNVEVIVDRMIDYMISI-ND--NHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEH-AGD---LVNI 441 (969)
Q Consensus 372 dLL---~~L~n~~Nv~~IV~eLl~yl~~~-~D--~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~-~gd---~v~~ 441 (969)
+.+ -..-...++..+.+-++.-+.+. .| -..+.+++..|-.+|...- -+.+.+.+..++.. -.+ .+..
T Consensus 459 ~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~ 536 (759)
T KOG0211|consen 459 DKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIRE 536 (759)
T ss_pred HHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHH
Confidence 422 22333334444445444444332 12 2344556666666665421 12222222222211 111 2333
Q ss_pred HHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCCCChHHHHHHHHHHHhhc
Q 002083 442 KVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAY 521 (969)
Q Consensus 442 ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~~~~~Il~~L~~~~~~~ 521 (969)
.+.+++..+ .+.||. ...+...+.+++....++.+- .+.+++..+-++....+ .+...+.|...+...
T Consensus 537 ~aa~~l~~l-~~~~G~------~w~~~~~i~k~L~~~~q~~y~--~R~t~l~si~~la~v~g---~ei~~~~Llp~~~~l 604 (759)
T KOG0211|consen 537 AAARNLPAL-VETFGS------EWARLEEIPKLLAMDLQDNYL--VRMTTLFSIHELAEVLG---QEITCEDLLPVFLDL 604 (759)
T ss_pred HHHHHhHHH-HHHhCc------chhHHHhhHHHHHHhcCcccc--hhhHHHHHHHHHHHHhc---cHHHHHHHhHHHHHh
Confidence 444444443 344552 233444555555555443222 13344555555544322 133344455544433
Q ss_pred --CCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHhcC
Q 002083 522 --SNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGL 583 (969)
Q Consensus 522 --~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~ 583 (969)
...+.||.-+.-.+-|+-..... ......+...++.+..+.+.|+|=||..-...+.+
T Consensus 605 ~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 605 VKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred ccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 34467887765555555432110 11234577788888889999999999988877654
No 76
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=2 Score=51.88 Aligned_cols=224 Identities=12% Similarity=0.097 Sum_probs=129.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhCC-cchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHh
Q 002083 155 GHSKEAVRRKAIMALHRFYQKSP-SSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAE 233 (969)
Q Consensus 155 ~d~~pyVRKkA~lal~kiy~~~P-e~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~ 233 (969)
.|.++.||++=+-|....+..+. +.+.++.+-+...|+.....-+.....++......+...+......++.+|-...
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~- 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL- 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc-
Confidence 68899999998888888887765 4567788888888864333333344444544444454455555556666665543
Q ss_pred ccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH-HHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCH---H
Q 002083 234 RRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ-ASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANP---K 309 (969)
Q Consensus 234 ~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~-~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~---~ 309 (969)
+.|++..|-....+|.-+...... ..+.+.+.+.+++..+. .+=...++..+..+-.+. .
T Consensus 106 ----------~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~------~~~~~~aa~~~ag~v~g~~i~~ 169 (569)
T KOG1242|consen 106 ----------DTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTK------IAERAGAAYGLAGLVNGLGIES 169 (569)
T ss_pred ----------CCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhcccc------HHHHhhhhHHHHHHHcCcHHhh
Confidence 357889999888888776543222 22334455555555332 122222333222221111 1
Q ss_pred H-HHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHhh----ChhHHHHhHHhhccccCCCchHHHHHHHHHhhc---ccCC
Q 002083 310 L-IESAADVIARFLKSDSHNLKY-MGIDALGRLIKT----SPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYK---MTKS 380 (969)
Q Consensus 310 l-l~~ai~~L~~fL~s~d~NlrY-vaL~~L~~I~~~----~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~---L~n~ 380 (969)
+ -...+..|.+++.++.+-.+- .++.++...... .--++.+....|+.|..|.+..+|..|.+-.-. -.+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 1 123567777887764432222 233333322221 112344567789999999999999986655444 4556
Q ss_pred CcHHHHHHHHHHHHh
Q 002083 381 SNVEVIVDRMIDYMI 395 (969)
Q Consensus 381 ~Nv~~IV~eLl~yl~ 395 (969)
.-|+.++.-++.-+.
T Consensus 250 ~aVK~llpsll~~l~ 264 (569)
T KOG1242|consen 250 YAVKLLLPSLLGSLL 264 (569)
T ss_pred chhhHhhhhhHHHHH
Confidence 667777776665554
No 77
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=6.5 Score=48.86 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=104.8
Q ss_pred hhcCCCcchhHHHHHHHHhhhccCchHH-----HHHHHHHHhhhcCccHHHHHHHHHHHHcccccch----------H--
Q 002083 81 MTHDDNLVLKRTGYLAVTLFLNEDHDLI-----ILIVNTIQKDLKSDNYLIVCAALNAVCKLINEET----------I-- 143 (969)
Q Consensus 81 l~sS~~~~~KRlgYLals~~~~~~~dll-----lL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el----------~-- 143 (969)
+-++.=++.||-+.+++.-+...-.+.. -=.|++|++|-.|+ .+...||.+++.+...+= +
T Consensus 31 vessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~--E~ik~~LdTl~il~~~dd~~~v~dds~qsdd 108 (970)
T KOG0946|consen 31 VESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDP--EIIKYALDTLLILTSHDDSPEVMDDSTQSDD 108 (970)
T ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCH--HHHHHHHHHHHHHHhcCcchhhcccchhhhH
Confidence 3466677888888888887776544322 24678888888754 577789999988765441 1
Q ss_pred ------------hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhh-------HHHHHHHhhcCCChhHHHHHHH
Q 002083 144 ------------PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQH-------LVSNFRKRLCDNDPGVMGATLC 204 (969)
Q Consensus 144 ------------~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~-------l~~~l~~lL~D~D~~Vv~aAl~ 204 (969)
+..+..+...+.+-+=+||+.|+--+-.+...-|--+++ -+.++..+|.|..--+...++.
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL 188 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAIL 188 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH
Confidence 133445666677788899999999999999888865543 4678888899988888888999
Q ss_pred HHHHhhhhCchh-----hHHHHHHHHHHHH
Q 002083 205 PLFDLITVDVNS-----YKDLVISFVSILK 229 (969)
Q Consensus 205 ~L~ei~~~~p~~-----~~~Lv~~lv~iLk 229 (969)
+|+++.+.++.. |...+-.+++|+.
T Consensus 189 lL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 189 LLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 999999888753 3334444444443
No 78
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.91 E-value=0.028 Score=52.74 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=57.4
Q ss_pred ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch----hhHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002083 139 NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV----QHLVSNFRKRLCDNDPGVMGATLCPLFDL 209 (969)
Q Consensus 139 ~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v----~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei 209 (969)
..+..+.+++.|.+++.|+++-||-.|+.+++.+.+...+.+ .++++.+.+++.|.|+.|..+| .+|-.+
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 456678899999999999999999999999999999876643 3567777888899999999876 344333
No 79
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.77 E-value=2 Score=51.75 Aligned_cols=88 Identities=17% Similarity=0.328 Sum_probs=61.0
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHHHHH---HhhCCcc--hhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhC-ch-
Q 002083 143 IPAVLPQVVELLGHSKEAVRRKAIMALHRF---YQKSPSS--VQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVD-VN- 215 (969)
Q Consensus 143 ~~~l~~~V~~lL~d~~pyVRKkA~lal~ki---y~~~Pe~--v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~-p~- 215 (969)
...+...+.+.|+|+.|.||-.|+-.+..+ .+-+.+. +..+-..+.+-|...+|-|+++.+.+++.|.... -.
T Consensus 602 l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 602 LSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 345667888999999999999988665544 4444442 3345556677788899999998888877665422 11
Q ss_pred ---hhHHHHHHHHHHHHH
Q 002083 216 ---SYKDLVISFVSILKQ 230 (969)
Q Consensus 216 ---~~~~Lv~~lv~iLk~ 230 (969)
...+++|++.-||+.
T Consensus 682 mqpPi~~ilP~ltPILrn 699 (975)
T COG5181 682 MQPPISGILPSLTPILRN 699 (975)
T ss_pred cCCchhhccccccHhhhh
Confidence 346677777777775
No 80
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=1.1 Score=57.39 Aligned_cols=268 Identities=12% Similarity=0.142 Sum_probs=138.7
Q ss_pred HHHHHHcCCCCcchHHHHHHhhcC-CCcc---hhHHHHHHHHh-hhccCchHHHHHHHHHHh-hhcCccHHHHHHHHHHH
Q 002083 61 LVYVEMLGHDASFGYIHAVKMTHD-DNLV---LKRTGYLAVTL-FLNEDHDLIILIVNTIQK-DLKSDNYLIVCAALNAV 134 (969)
Q Consensus 61 Liyl~mlG~Dvsf~~~~vIkl~sS-~~~~---~KRlgYLals~-~~~~~~dlllL~iNtLqK-DL~s~N~~vralALr~L 134 (969)
..|++.-+-|+.-.+.+.+...++ .+-. .|++-.|-+-. ++...++--+-..+++.. +.++.+.-++--|-+.|
T Consensus 599 ~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL 678 (1176)
T KOG1248|consen 599 VDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLL 678 (1176)
T ss_pred HHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHH
Confidence 356777777777767776654443 3312 22222221111 111112212222223333 44555666766666665
Q ss_pred Hccccc--------chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC----cchhhHHHHHHHhhcCCChhHHHHH
Q 002083 135 CKLINE--------ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP----SSVQHLVSNFRKRLCDNDPGVMGAT 202 (969)
Q Consensus 135 s~I~~~--------el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P----e~v~~l~~~l~~lL~D~D~~Vv~aA 202 (969)
-.+... .-+..+...+.+.+.+...++|+.++-|+.++|+..| +.+..+++++.=.+.|.|..--..|
T Consensus 679 ~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~A 758 (1176)
T KOG1248|consen 679 EELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNA 758 (1176)
T ss_pred HHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhH
Confidence 444322 3344555566666667788999999999999999999 4444444444433455555555556
Q ss_pred HHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhc
Q 002083 203 LCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRK 282 (969)
Q Consensus 203 l~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~ 282 (969)
+..|+.|...+ ..+. . ..+| + +..-+.++.+|..-+-
T Consensus 759 f~lL~~i~~i~------------~~~d---~-----------g~e~--~--------------~~~lnefl~~Isagl~- 795 (1176)
T KOG1248|consen 759 FALLVFIGAIQ------------SSLD---D-----------GNEP--A--------------SAILNEFLSIISAGLV- 795 (1176)
T ss_pred HHHHHHHHHHH------------hhhc---c-----------cccc--h--------------HHHHHHHHHHHHhhhc-
Confidence 65555554200 0000 0 0011 0 0001122222222111
Q ss_pred cCCCCCCCchHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhH-HHHhHHhh---
Q 002083 283 CDSSSNIGNAVLYECICCVSS-I--YANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEI-AEQHQLAV--- 355 (969)
Q Consensus 283 ~~~~~Ni~~AVlyEaik~I~~-l--~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l-~~~h~~~I--- 355 (969)
.+.++++.+. ++ ++.+++. . .-+.+.+...++.+..+|.++.++++-.|+..+..++...|+. +.+|...+
T Consensus 796 gd~~~~~as~-Iv-ai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 796 GDSTRVVASD-IV-AITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred ccHHHHHHHH-HH-HHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 1122222222 11 2222221 1 2346677788999999999999999999999999999999865 45665443
Q ss_pred -ccccCCCchHHHHHHHHH
Q 002083 356 -IDCLEDPDDTLKRKTFEL 373 (969)
Q Consensus 356 -~~cL~D~D~sIR~kaLdL 373 (969)
+..+.|....+|.+...|
T Consensus 874 ll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 874 LLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 333344445555554433
No 81
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=4.1 Score=49.63 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcH-HHHHHHHHHHHhhcCChhhHHH
Q 002083 327 HNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNV-EVIVDRMIDYMISINDNHYKTE 405 (969)
Q Consensus 327 ~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv-~~IV~eLl~yl~~~~D~~~k~e 405 (969)
.++|-.+...+..|+...|.+.......+++.++|....+|.+|+.-|..+.+.=-+ ++.++.+++-+.+. ..+.|..
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~-s~dvRe~ 465 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR-SVDVREA 465 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc-CHHHHHH
Confidence 579999999999999999999999999999999999999999999998888765222 34556666666653 3344433
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.66 E-value=1.2 Score=52.41 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=95.4
Q ss_pred HHhCCCCCchHHHHHHHHHHH----HHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHh
Q 002083 42 RRISEPDIPKRKMKEYIIRLV----YVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQK 117 (969)
Q Consensus 42 ~~f~~~~~~~~~~ke~l~KLi----yl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqK 117 (969)
..+.+|+.+-...-+.=-||. -+-..| ..+.-.++..+....-...+.... ..+..-+.. .++..+.+
T Consensus 22 ~a~~~p~~~l~~la~ldeRL~AhLdgL~~~G---~~a~~~L~~aL~~d~~~ev~~~aa--~al~~~~~~---~~~~~L~~ 93 (410)
T TIGR02270 22 RALVAPDYVLEDLAELEERLLAHVDGLVLAG---KAATELLVSALAEADEPGRVACAA--LALLAQEDA---LDLRSVLA 93 (410)
T ss_pred HHhcCCCCCHHHHHhHHHHHHHHHHHHHHhh---HhHHHHHHHHHhhCCChhHHHHHH--HHHhccCCh---HHHHHHHH
Confidence 356777776543322222221 122355 234555667775443334444322 222222222 14788889
Q ss_pred hhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChh
Q 002083 118 DLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPG 197 (969)
Q Consensus 118 DL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~ 197 (969)
-|.+.++-+|..|.+.|+.|..+... +.+..+|.|.+|.||..++-++. ....+| .+.+..+|.|.|+.
T Consensus 94 ~L~d~~~~vr~aaa~ALg~i~~~~a~----~~L~~~L~~~~p~vR~aal~al~-~r~~~~------~~~L~~~L~d~d~~ 162 (410)
T TIGR02270 94 VLQAGPEGLCAGIQAALGWLGGRQAE----PWLEPLLAASEPPGRAIGLAALG-AHRHDP------GPALEAALTHEDAL 162 (410)
T ss_pred HhcCCCHHHHHHHHHHHhcCCchHHH----HHHHHHhcCCChHHHHHHHHHHH-hhccCh------HHHHHHHhcCCCHH
Confidence 99999999999999999999888654 55678889999999998884444 333222 35677788899999
Q ss_pred HHHHHHHHHHHhh
Q 002083 198 VMGATLCPLFDLI 210 (969)
Q Consensus 198 Vv~aAl~~L~ei~ 210 (969)
|..+|+.+|-.+.
T Consensus 163 Vra~A~raLG~l~ 175 (410)
T TIGR02270 163 VRAAALRALGELP 175 (410)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998887653
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.61 E-value=0.43 Score=50.86 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=100.1
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhC--CcchhhHHH-------HHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHH
Q 002083 152 ELLGHSKEAVRRKAIMALHRFYQKS--PSSVQHLVS-------NFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVI 222 (969)
Q Consensus 152 ~lL~d~~pyVRKkA~lal~kiy~~~--Pe~v~~l~~-------~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~ 222 (969)
+.-.+.+--.|..|+..+-++...+ .+..+.+++ .+...+.|....|+..|+..+.+++..-...+.+++.
T Consensus 14 ~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 14 KKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred ccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 3446778888999999999988877 233333333 4445667878888888888877777655555665555
Q ss_pred HHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHH
Q 002083 223 SFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVS 302 (969)
Q Consensus 223 ~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~ 302 (969)
.++..|-..+. -...++.....+.|..+...-.-..+-+...+...+. ++| ..|..+|+.++.
T Consensus 94 ~~l~~Ll~~~~-----------~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~----~Kn--~~vR~~~~~~l~ 156 (228)
T PF12348_consen 94 ILLPPLLKKLG-----------DSKKFIREAANNALDAIIESCSYSPKILLEILSQGLK----SKN--PQVREECAEWLA 156 (228)
T ss_dssp HHHHHHHHGGG--------------HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-----S---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----------cccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHh----CCC--HHHHHHHHHHHH
Confidence 55554433221 1356777777777766654322111111333333332 333 467677777664
Q ss_pred hcC---C-------CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHH
Q 002083 303 SIY---A-------NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIA 348 (969)
Q Consensus 303 ~l~---~-------~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~ 348 (969)
.+- + ....+..+...|.+++.+.++++|..+-.++..+.+..|+-.
T Consensus 157 ~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 157 IILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 431 1 112245677788888888888999988888888877777654
No 84
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=1.4 Score=50.02 Aligned_cols=245 Identities=15% Similarity=0.192 Sum_probs=145.9
Q ss_pred HHHhhcCCCcchhHHHHHHHHhhhccCch--HH--HHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhh------HH
Q 002083 78 AVKMTHDDNLVLKRTGYLAVTLFLNEDHD--LI--ILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPA------VL 147 (969)
Q Consensus 78 vIkl~sS~~~~~KRlgYLals~~~~~~~d--ll--lL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~------l~ 147 (969)
|.-++++.+-...+.|.-++..++-.... +. ++-...+...+..++..++|.|..++.++.+.+-... -+
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 44577788777777777777766533221 11 1112224455677788899999999998877643221 12
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhCCc---chh-hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc--hhhH---
Q 002083 148 PQVVELLGHSKEAVRRKAIMALHRFYQKSPS---SVQ-HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV--NSYK--- 218 (969)
Q Consensus 148 ~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe---~v~-~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p--~~~~--- 218 (969)
..+.++-+.++--||+.|.-++..+-+.+.. ++. .-++.+..++...|+.|..-+..++-.|.-+.. +..-
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqae 249 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAE 249 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence 2445577788889999998888877665433 222 246778888999999999877777655543221 1111
Q ss_pred -HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh----hHHHHHHhHhccCCCCCCCchH
Q 002083 219 -DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN----MYTVVGDIFRKCDSSSNIGNAV 293 (969)
Q Consensus 219 -~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~----l~~iL~~iL~~~~~~~Ni~~AV 293 (969)
.++|.+++++.. +++-.++..=--|..+..+.....+- -++.+.++|+.. . + -.
T Consensus 250 p~lv~~Lv~Lmd~---------------~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~----~-pl 308 (550)
T KOG4224|consen 250 PKLVPALVDLMDD---------------GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP-M----G-PL 308 (550)
T ss_pred cchHHHHHHHHhC---------------CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc-c----h-hH
Confidence 244555554432 35555555544455555443221111 134555666532 1 1 34
Q ss_pred HHHHHHHH--HhcCC-CHHHHH--HHHHHHHHHhcCCChh-HHHHHHHHHHHHHhh
Q 002083 294 LYECICCV--SSIYA-NPKLIE--SAADVIARFLKSDSHN-LKYMGIDALGRLIKT 343 (969)
Q Consensus 294 lyEaik~I--~~l~~-~~~ll~--~ai~~L~~fL~s~d~N-lrYvaL~~L~~I~~~ 343 (969)
+.+.+-|| +.+.+ |..++. -...+|.++|.-.|++ ++.-+...|..++..
T Consensus 309 ilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 309 ILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred HHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 56666677 33443 333321 2457799999887765 998888888877753
No 85
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.57 E-value=1.3 Score=52.14 Aligned_cols=230 Identities=14% Similarity=0.208 Sum_probs=113.4
Q ss_pred chhHHHHHHHHhhhccCchHH-----HHHHHHHHhhhcCccHHHHHHHHHHHHcccccc----hHhhHHHHHHHhc-CCC
Q 002083 88 VLKRTGYLAVTLFLNEDHDLI-----ILIVNTIQKDLKSDNYLIVCAALNAVCKLINEE----TIPAVLPQVVELL-GHS 157 (969)
Q Consensus 88 ~~KRlgYLals~~~~~~~dll-----lL~iNtLqKDL~s~N~~vralALr~Ls~I~~~e----l~~~l~~~V~~lL-~d~ 157 (969)
..+++.+++...+..-+++.. -++-..+.--+++.++..|-.+++.+|.+.|.- .+..++..+..-+ ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 567777777777665444433 233333333445566888888888888887762 2233333333333 334
Q ss_pred ChHHHHHHHHHHHHH-----HhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh-HHHHHHHHHHHHHH
Q 002083 158 KEAVRRKAIMALHRF-----YQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY-KDLVISFVSILKQV 231 (969)
Q Consensus 158 ~pyVRKkA~lal~ki-----y~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~-~~Lv~~lv~iLk~l 231 (969)
.+-.|..++..+..+ .|.+|. ...+.+.+.++|.|.+.+... ... ++++..+.+.+ ..-...-+++|.+
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~-~~~~~~~L~~lL~~~~~g~~a--A~~-f~il~~d~~~~l~~~~~a~vklLyk- 317 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPL-ATELLDKLLELLSSPELGQQA--AKA-FGILLSDSDDVLNKENHANVKLLYK- 317 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHhCChhhHHHH--HHH-HhhHhcCcHHhcCccccchhhhHHh-
Confidence 455566666555443 334554 345677777888774433322 122 23332321110 0000011122211
Q ss_pred HhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHH
Q 002083 232 AERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLI 311 (969)
Q Consensus 232 ~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll 311 (969)
++....+.+.|.+..+..+.. .....+.|...++.-.|.+-+.
T Consensus 318 ----------------------------------QR~F~~~~p~L~~~~~~~~~~---~k~~yL~ALs~ll~~vP~~vl~ 360 (415)
T PF12460_consen 318 ----------------------------------QRFFTQVLPKLLEGFKEADDE---IKSNYLTALSHLLKNVPKSVLL 360 (415)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHhhcChh---hHHHHHHHHHHHHhhCCHHHHH
Confidence 011111111221222211100 0112222333333322321111
Q ss_pred H---HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhcccc
Q 002083 312 E---SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCL 359 (969)
Q Consensus 312 ~---~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL 359 (969)
. ...-.|..-|..++.++++.+|+.|..++...|.++.+|...++..|
T Consensus 361 ~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 361 PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 1 12223344456678899999999999999999999999998877543
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.44 E-value=1 Score=53.01 Aligned_cols=118 Identities=19% Similarity=0.053 Sum_probs=80.0
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhc
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELL 154 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL 154 (969)
.-.+++.+.+.+-..++-.=-++..+- +++ +...|.+-|.+.++.+|..+|..++... .+ -.+.++.+|
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~~----a~~~L~~~L~~~~p~vR~aal~al~~r~-~~----~~~~L~~~L 156 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG--GRQ----AEPWLEPLLAASEPPGRAIGLAALGAHR-HD----PGPALEAAL 156 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC--chH----HHHHHHHHhcCCChHHHHHHHHHHHhhc-cC----hHHHHHHHh
Confidence 344556666554433332222333221 122 2345667779999999999997776633 43 246778889
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002083 155 GHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDL 209 (969)
Q Consensus 155 ~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei 209 (969)
.|.+++||..|+-++.++-. ++. .+.|...+.|.|+.|-.+|+..+..+
T Consensus 157 ~d~d~~Vra~A~raLG~l~~--~~a----~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 157 THEDALVRAAALRALGELPR--RLS----ESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred cCCCHHHHHHHHHHHHhhcc--ccc----hHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 99999999999999997654 443 34566779999999999999887544
No 87
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.29 E-value=0.71 Score=56.48 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhh-HHH
Q 002083 107 LIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQH-LVS 185 (969)
Q Consensus 107 lllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~-l~~ 185 (969)
+.--+.+.|++..+..+...+-++|++|+|++.+..+..+.+.+. .-...++++|..|+.|+-++-..+|+.+.. +++
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~ 521 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLP 521 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 333445555666666778888999999999999999988877765 334567899999999999999999998765 333
Q ss_pred HHHHhhcCCChhHHHHHHHHHHH
Q 002083 186 NFRKRLCDNDPGVMGATLCPLFD 208 (969)
Q Consensus 186 ~l~~lL~D~D~~Vv~aAl~~L~e 208 (969)
.+. -.+.++-|..+|+.+|++
T Consensus 522 i~~--n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 522 IYL--NRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHc--CCCCChHHHHHHHHHHHh
Confidence 332 134678888888776653
No 88
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.25 E-value=0.093 Score=49.28 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccc----cCCCchHHHHHHHHHhhc
Q 002083 308 PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDC----LEDPDDTLKRKTFELLYK 376 (969)
Q Consensus 308 ~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~c----L~D~D~sIR~kaLdLL~~ 376 (969)
.+.++..+.++...+.+.|..+||.++++|..|++..+..+-.|...||.. ..|+|..+|.-| ++|-+
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 456777888999999999999999999999999999887777787777654 479999999877 55433
No 89
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.17 E-value=0.23 Score=59.86 Aligned_cols=174 Identities=15% Similarity=0.186 Sum_probs=114.9
Q ss_pred HHHHHhhcC----CCcchhHHHHHHHHhhhccCc----hHHHHHHHHHHhhhcCccHHHHHHHHHHHHcc--cccchHhh
Q 002083 76 IHAVKMTHD----DNLVLKRTGYLAVTLFLNEDH----DLIILIVNTIQKDLKSDNYLIVCAALNAVCKL--INEETIPA 145 (969)
Q Consensus 76 ~~vIkl~sS----~~~~~KRlgYLals~~~~~~~----dlllL~iNtLqKDL~s~N~~vralALr~Ls~I--~~~el~~~ 145 (969)
+-|.+.+++ +|-+.-+.+||.+..+.--.. |-+-|.|-.+. ++|+|.+|+.|.-.|+.+ +-..+++.
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~me---k~p~P~IR~NaVvglgD~~vcfN~~~de 971 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSME---KHPIPRIRANAVVGLGDFLVCFNTTADE 971 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hCCCcceeccceeeccccceehhhhhHH
Confidence 334566666 677888899988766543322 32333333333 389999999998888764 34556677
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHH
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFV 225 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv 225 (969)
....+.+.|.|.+.-|||.+.|.++-+....-=-++.-..++..+|.|.|..+---|=..|.++.+++-..|..+ +
T Consensus 972 ~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~yn~f----i 1047 (1128)
T COG5098 972 HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMYNGF----I 1047 (1128)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchhhhh----H
Confidence 777888999999999999999999977765443445567888889999999887666677788877665544433 3
Q ss_pred HHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCC
Q 002083 226 SILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGD 265 (969)
Q Consensus 226 ~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d 265 (969)
++...+...... -..|| -+|+++|+.|...+
T Consensus 1048 difs~ls~~ae~-------g~e~f--k~II~FLt~fI~ke 1078 (1128)
T COG5098 1048 DIFSTLSSDAEN-------GQEPF--KLIIGFLTDFISKE 1078 (1128)
T ss_pred HHHHHcCchhhc-------CCCcH--HHHHHHHHHHHHHH
Confidence 333332110000 11344 47889988886543
No 90
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.01 E-value=11 Score=45.37 Aligned_cols=153 Identities=15% Similarity=0.099 Sum_probs=93.2
Q ss_pred HHHHHHHHHHcCCCCcchHHH------HHHhhcCCCcchhHHHHHHHHhhhccCch------------------------
Q 002083 57 YIIRLVYVEMLGHDASFGYIH------AVKMTHDDNLVLKRTGYLAVTLFLNEDHD------------------------ 106 (969)
Q Consensus 57 ~l~KLiyl~mlG~Dvsf~~~~------vIkl~sS~~~~~KRlgYLals~~~~~~~d------------------------ 106 (969)
++.-+.-++|+-|++=..+++ -+..|.|++-+.+-..--|++...++.-|
T Consensus 241 afgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~ 320 (858)
T COG5215 241 AFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVA 320 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHH
Confidence 333444445555653222222 35678888888888888888665554322
Q ss_pred -HHHHHHHHHHhhhcC-----ccH-HHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-c
Q 002083 107 -LIILIVNTIQKDLKS-----DNY-LIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP-S 178 (969)
Q Consensus 107 -lllL~iNtLqKDL~s-----~N~-~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P-e 178 (969)
++--+-|.|.|.=.+ =|+ +..+.-|...+.+...-|++.++..|.+.++..+-.=|-.|+||+..+..--- +
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~ 400 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED 400 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence 111222333331111 122 33445566678888888999999999999999999999999999998876321 1
Q ss_pred ----chhhHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002083 179 ----SVQHLVSNFRKRLCDNDPGVMGATLCPLFDL 209 (969)
Q Consensus 179 ----~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei 209 (969)
.+.+.++-+..+..|.--.|...+.-.|..|
T Consensus 401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~i 435 (858)
T COG5215 401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAI 435 (858)
T ss_pred HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHH
Confidence 2345566666666666555654433334444
No 91
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.01 E-value=0.27 Score=59.36 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=100.5
Q ss_pred CcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc-----ccchHh-------hHHHHHHHh
Q 002083 86 NLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI-----NEETIP-------AVLPQVVEL 153 (969)
Q Consensus 86 ~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~-----~~el~~-------~l~~~V~~l 153 (969)
+..--|-.-+++..+.+-.|.+++---|.+-+-|.+.....||.-+...+++. .++|++ .++..+.+.
T Consensus 275 d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ER 354 (1128)
T COG5098 275 DLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVER 354 (1128)
T ss_pred cccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHH
Confidence 33333455566666666667777666788889999999999999999999864 444554 566667778
Q ss_pred cCCCChHHHHHHHHHHHHHHhhCCcchh---hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc
Q 002083 154 LGHSKEAVRRKAIMALHRFYQKSPSSVQ---HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 154 L~d~~pyVRKkA~lal~kiy~~~Pe~v~---~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
+.|.+||+|-||+..+.|+|....-... .+.....+.|.|+...|.-+|+.++..+...+|
T Consensus 355 l~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 355 LSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred hhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999998755443 567777788999999999999998887777665
No 92
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.85 E-value=0.24 Score=51.93 Aligned_cols=117 Identities=20% Similarity=0.284 Sum_probs=80.8
Q ss_pred HHHHhhhcCccHHHHHHHHHHHHcccccchHh--hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhh-HHHHHH-
Q 002083 113 NTIQKDLKSDNYLIVCAALNAVCKLINEETIP--AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQH-LVSNFR- 188 (969)
Q Consensus 113 NtLqKDL~s~N~~vralALr~Ls~I~~~el~~--~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~-l~~~l~- 188 (969)
+.|.+-+.+++..+|-.|++.+..+...-++. ..+|.+..+..|++++||++|...+-.++.++|+.+.. +.+-++
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~ 90 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRL 90 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44556678999999999999999766555554 45788999999999999999999999999999998862 222222
Q ss_pred -----Hhh-cCCChhH---HHHHHHHHHHhhhhCchhhHHHHHHHHHHHH
Q 002083 189 -----KRL-CDNDPGV---MGATLCPLFDLITVDVNSYKDLVISFVSILK 229 (969)
Q Consensus 189 -----~lL-~D~D~~V---v~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk 229 (969)
..+ .|..... ..+-+..+++++..+.+.-+.++..+++.+.
T Consensus 91 af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~ 140 (187)
T PF12830_consen 91 AFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFD 140 (187)
T ss_pred HHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 222 2322222 4556677788877554444445444444443
No 93
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.77 E-value=1.8 Score=55.75 Aligned_cols=256 Identities=14% Similarity=0.193 Sum_probs=137.1
Q ss_pred ccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc-------ch-hhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002083 137 LINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPS-------SV-QHLVSNFRKRLCDNDPGVMGATLCPLFD 208 (969)
Q Consensus 137 I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe-------~v-~~l~~~l~~lL~D~D~~Vv~aAl~~L~e 208 (969)
+..+..++-++|.+..++.|+.+.||-.|+.++.++.-.--+ +. +-+++.|..++.|.++..+..|.+-=+.
T Consensus 454 i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla 533 (1431)
T KOG1240|consen 454 IDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLA 533 (1431)
T ss_pred cchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHH
Confidence 456677899999999999999999999999999998865422 22 2478999999999655544333321111
Q ss_pred hhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHH----HHHhHhccC
Q 002083 209 LITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTV----VGDIFRKCD 284 (969)
Q Consensus 209 i~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~i----L~~iL~~~~ 284 (969)
.+.. ..| .|.+.-.++-...+ ++ +|=.+... . ...+ .....+... ...++. +
T Consensus 534 ~LA~--tA~-----rFle~~q~~~~~g~-----~n---~~nset~~-----~-~~~~-~~~~~L~~~V~~~v~sLls--d 589 (1431)
T KOG1240|consen 534 QLAK--TAY-----RFLELTQELRQAGM-----LN---DPNSETAP-----E-QNYN-TELQALHHTVEQMVSSLLS--D 589 (1431)
T ss_pred HHHH--HHH-----HHHHHHHHHHhccc-----cc---Cccccccc-----c-cccc-hHHHHHHHHHHHHHHHHHc--C
Confidence 1100 111 12221111100000 00 00000000 0 0000 011122222 222222 2
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-hChhHHHHhH-HhhccccCCC
Q 002083 285 SSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIK-TSPEIAEQHQ-LAVIDCLEDP 362 (969)
Q Consensus 285 ~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~-~~P~l~~~h~-~~I~~cL~D~ 362 (969)
...++-.+ ++|.|--++.+.-..+--......|.+||+.+|..+|-.-.+.|.-++- ..+.-++++. ..+..-|.|+
T Consensus 590 ~~~~Vkr~-Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 590 SPPIVKRA-LLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred CchHHHHH-HHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCc
Confidence 22121112 2344332222221111011234678899999999999998888875542 2222233333 3455678898
Q ss_pred chHHHHHHHHHhhcccCCCcH-----HHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcC
Q 002083 363 DDTLKRKTFELLYKMTKSSNV-----EVIVDRMIDYMISINDNHYKTEIASRCVELAEQFA 418 (969)
Q Consensus 363 D~sIR~kaLdLL~~L~n~~Nv-----~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekya 418 (969)
.+.+=-+||.-|..|+.-.++ .+|++..+-++-. .+.-+|+.++.-|+.+++++.
T Consensus 669 EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~h-PN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCH-PNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred chhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeC-chHHHHHHHHHHHHHHHhhhh
Confidence 888888888877777766664 4566666666654 455778888887777777653
No 94
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.71 E-value=0.18 Score=45.17 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=61.6
Q ss_pred HHHhh-cCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCC
Q 002083 78 AVKMT-HDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGH 156 (969)
Q Consensus 78 vIkl~-sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d 156 (969)
.++.+ .+++...|.-...++..+-+ + =+++.|.+=++|+|+.+|-.|+.+|+.+.+++ ..+.+.+++.+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~ 73 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELGD--P----EAIPALIELLKDEDPMVRRAAARALGRIGDPE----AIPALIKLLQD 73 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCTH--H----HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH----THHHHHHHHTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCC--H----hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH----HHHHHHHHHcC
Confidence 45555 67778888777777775532 2 33666666678999999999999999998765 45666777766
Q ss_pred -CChHHHHHHHHHHH
Q 002083 157 -SKEAVRRKAIMALH 170 (969)
Q Consensus 157 -~~pyVRKkA~lal~ 170 (969)
.+..||..|+.+|.
T Consensus 74 ~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 DDDEVVREAAAEALG 88 (88)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcC
Confidence 56778999988873
No 95
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=12 Score=46.93 Aligned_cols=337 Identities=18% Similarity=0.249 Sum_probs=184.1
Q ss_pred CCchhHHHHHHHHh--ccCCh-HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH---HHHHcCCCCcchHHHHHHh
Q 002083 8 GQSKEFLDLVKSIG--EARSK-AEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLV---YVEMLGHDASFGYIHAVKM 81 (969)
Q Consensus 8 ~~sk~l~dlIk~Ir--~~ks~-~eE~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLi---yl~mlG~Dvsf~~~~vIkl 81 (969)
..++-+..++..|- +--.. ++|+-+=..-+.-+|+.+...|++.+++ +.+-|+ --..-|.-..-.--|+=.+
T Consensus 331 ~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR--~a~dlvrgL~~~fe~~vt~v~~~~v~~~ 408 (960)
T KOG1992|consen 331 EGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRR--AAIDLVRGLCKNFEGQVTGVFSSEVQRL 408 (960)
T ss_pred cchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHH--HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34445555555542 22222 2344443345778999999999986532 222222 2111222222233444456
Q ss_pred hc------CCCcchhHH-HHHHHHhhhcc------------CchHHHHHHHHHHhhhcCc----cHHHHHHHHHHHHccc
Q 002083 82 TH------DDNLVLKRT-GYLAVTLFLNE------------DHDLIILIVNTIQKDLKSD----NYLIVCAALNAVCKLI 138 (969)
Q Consensus 82 ~s------S~~~~~KRl-gYLals~~~~~------------~~dlllL~iNtLqKDL~s~----N~~vralALr~Ls~I~ 138 (969)
+. |.|-..|-+ .||..+.-.+- --|+.-..+|.+..||.++ +|+.++-|++.+-..|
T Consensus 409 l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR 488 (960)
T KOG1992|consen 409 LDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFR 488 (960)
T ss_pred HHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeec
Confidence 66 555555544 34443333331 1255567889999999984 5888999999886544
Q ss_pred ---ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch
Q 002083 139 ---NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN 215 (969)
Q Consensus 139 ---~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~ 215 (969)
.++.+-.++|.+.+.|...+..|-+-|+.|+=|+...... .+.-+.++-
T Consensus 489 ~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~----------------~~~~if~~~------------ 540 (960)
T KOG1992|consen 489 NQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN----------------SNAKIFGAE------------ 540 (960)
T ss_pred ccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC----------------ccccccchh------------
Confidence 4666667888888889889999999999999888765433 111111110
Q ss_pred hhHHHHHHHHHHHHHHHhc-cCCCCcCCCCCCChhHHHHHHHHHHHhCCC----ChHHHhhhHHHHHHhHhccCCCCCCC
Q 002083 216 SYKDLVISFVSILKQVAER-RLPKSYDYHQMPAPFIQIRLLKILALLGSG----DKQASENMYTVVGDIFRKCDSSSNIG 290 (969)
Q Consensus 216 ~~~~Lv~~lv~iLk~l~~~-~lp~~y~y~~v~~PWlQikLLklL~~l~~~----d~~~se~l~~iL~~iL~~~~~~~Ni~ 290 (969)
.+.|....+|.++.++ ..|. +.-++|+.-.|+|++...... -+.....+.+++..+-++- ++-..
T Consensus 541 ---~iap~~~~ll~nLf~a~s~p~-----~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNP--s~P~f 610 (960)
T KOG1992|consen 541 ---DIAPFVEILLTNLFKALSLPG-----KAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNP--SNPQF 610 (960)
T ss_pred ---hcchHHHHHHHHHHHhccCCc-----ccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCC--CCchh
Confidence 1112222222222211 1222 134788877788877665321 1222233444444444322 11113
Q ss_pred chHHHHHHHHHHhcC--CCHHHHHHHHH----HHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCch
Q 002083 291 NAVLYECICCVSSIY--ANPKLIESAAD----VIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDD 364 (969)
Q Consensus 291 ~AVlyEaik~I~~l~--~~~~ll~~ai~----~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~ 364 (969)
+.-+||++-+++... .++..+..... .+...|..+=.++---+++.+..++..+..-+.+..+.++.||-.|
T Consensus 611 nHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp-- 688 (960)
T KOG1992|consen 611 NHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSP-- 688 (960)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCH--
Confidence 467899988776543 34444433323 2333443332455556788888888776443333345566666665
Q ss_pred HHHHHHHHHhhcccCCCcHHHHHHHHHHHHhh
Q 002083 365 TLKRKTFELLYKMTKSSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 365 sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~ 396 (969)
.++.+ ..|+-.+|.-|..++..
T Consensus 689 ~lW~r----------~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 689 NLWKR----------SGNIPALVRLLQAFLKT 710 (960)
T ss_pred HHHhh----------cCCcHHHHHHHHHHHhc
Confidence 34333 35788888877777764
No 96
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.55 E-value=0.06 Score=39.55 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQK 175 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~ 175 (969)
++|.+.++++|+++.||..|+.|+.++.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 468899999999999999999999998764
No 97
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.38 E-value=10 Score=49.29 Aligned_cols=292 Identities=14% Similarity=0.154 Sum_probs=152.9
Q ss_pred HHHHHHhcCCCC-hHHHHHHHHHHHHHHhhC--CcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-------Cchh
Q 002083 147 LPQVVELLGHSK-EAVRRKAIMALHRFYQKS--PSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV-------DVNS 216 (969)
Q Consensus 147 ~~~V~~lL~d~~-pyVRKkA~lal~kiy~~~--Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~-------~p~~ 216 (969)
++-|..++++-+ ..-|.+|+.-+..+-+.- ...++..++++..++.|..+.|.+.|+-.|++++.. |...
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 334444444432 334445544444443322 335667899999999999999999999888887652 1123
Q ss_pred hHH-HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHh--Hhcc--CCCCCCC-
Q 002083 217 YKD-LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDI--FRKC--DSSSNIG- 290 (969)
Q Consensus 217 ~~~-Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~i--L~~~--~~~~Ni~- 290 (969)
|-+ ++|++-.++..- .+....+-.=.-|.. .++..+.+|... ++.. ....|..
T Consensus 504 F~eYlfP~L~~l~~d~--------------~~~~vRiayAsnla~-------LA~tA~rFle~~q~~~~~g~~n~~nset 562 (1431)
T KOG1240|consen 504 FPEYLFPHLNHLLNDS--------------SAQIVRIAYASNLAQ-------LAKTAYRFLELTQELRQAGMLNDPNSET 562 (1431)
T ss_pred hHhhhhhhhHhhhccC--------------ccceehhhHHhhHHH-------HHHHHHHHHHHHHHHHhcccccCccccc
Confidence 332 224444443220 011111111111111 222223333221 1111 0111110
Q ss_pred -chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-----ChhHHHHhHHhhccccCCCch
Q 002083 291 -NAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKT-----SPEIAEQHQLAVIDCLEDPDD 364 (969)
Q Consensus 291 -~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~-----~P~l~~~h~~~I~~cL~D~D~ 364 (969)
.--.|++ .-..|+....+....||..+++++|-.-|+.|..|+.- .-+++-.| ++-.|+|.|.
T Consensus 563 ~~~~~~~~--------~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLsh---LiTfLNDkDw 631 (1431)
T KOG1240|consen 563 APEQNYNT--------ELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSH---LITFLNDKDW 631 (1431)
T ss_pred ccccccch--------HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHH---HHHHhcCccH
Confidence 0000100 01345666677788899988899999999998888742 22444444 5556799999
Q ss_pred HHHHHHHHHhh---cccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHH---HHhhhCcc
Q 002083 365 TLKRKTFELLY---KMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNK---VFEHAGDL 438 (969)
Q Consensus 365 sIR~kaLdLL~---~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~---ll~~~gd~ 438 (969)
.+|--=+|-+. ..+....+++++-=|+.+--.-..+.....++..+..|++.--=....+++++-. ++.+-...
T Consensus 632 ~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~W 711 (1431)
T KOG1240|consen 632 RLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLW 711 (1431)
T ss_pred HHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHH
Confidence 99999888888 4456776776666565554321344555566666667775422222334444333 33444445
Q ss_pred chHHHHHHHHHHHhcccCCCccc--cchhHHHHHH
Q 002083 439 VNIKVAHNLMRLIAEGFGEDDDN--ADSQLRSSAV 471 (969)
Q Consensus 439 v~~ev~~~li~lI~~~~g~~~~~--~~p~lr~~av 471 (969)
|...++. +|-.+.++++.-+.. ..|-+|.+.-
T Consensus 712 IR~~~~~-iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 712 IRRAVLG-IIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHH-HHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 5555443 333444555432221 2466666543
No 98
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.35 E-value=21 Score=45.36 Aligned_cols=316 Identities=14% Similarity=0.153 Sum_probs=156.5
Q ss_pred chHHHHHHHHHHhhhcCc-cHHHHHHHHHHHHcc-----cccchHhhHHHHHHHhc-CCCChHHHHHHHHHHHHHHhhCC
Q 002083 105 HDLIILIVNTIQKDLKSD-NYLIVCAALNAVCKL-----INEETIPAVLPQVVELL-GHSKEAVRRKAIMALHRFYQKSP 177 (969)
Q Consensus 105 ~dlllL~iNtLqKDL~s~-N~~vralALr~Ls~I-----~~~el~~~l~~~V~~lL-~d~~pyVRKkA~lal~kiy~~~P 177 (969)
.|.+.-.++++...+.+. -|...+-|+-+++.. .++.+...++..-...+ .|..++||-+|+.+..-.....+
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v 523 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV 523 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCcee
Confidence 356677788888888754 566666777777653 45566666665555554 48889999999988776653221
Q ss_pred --cchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh----HHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHH
Q 002083 178 --SSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY----KDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQ 251 (969)
Q Consensus 178 --e~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~----~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQ 251 (969)
+..+.+++-+..+..+...-|.+..+=+|+-+++-||+.- ..++|.++++.-... .+|..-
T Consensus 524 l~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s-------------~DP~V~ 590 (1005)
T KOG2274|consen 524 LLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYS-------------EDPQVA 590 (1005)
T ss_pred ccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhc-------------CCchHH
Confidence 2233455555556666666666555556666777777521 234455565544321 245433
Q ss_pred HHHHHHHHHhCCC----ChHHHhhhHHHHHHhHhccCC-CCCCCchHHHHHHHHHHhcCCC---HHHHHHHHHHHHHH-h
Q 002083 252 IRLLKILALLGSG----DKQASENMYTVVGDIFRKCDS-SSNIGNAVLYECICCVSSIYAN---PKLIESAADVIARF-L 322 (969)
Q Consensus 252 ikLLklL~~l~~~----d~~~se~l~~iL~~iL~~~~~-~~Ni~~AVlyEaik~I~~l~~~---~~ll~~ai~~L~~f-L 322 (969)
.....+|..+... .+ ..+.+++-|-.++..... ..-.--++..+.+.|++.-.++ ..++..|..++.+. +
T Consensus 591 ~~~qd~f~el~q~~~~~g~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tl 669 (1005)
T KOG2274|consen 591 SLAQDLFEELLQIAANYGP-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITL 669 (1005)
T ss_pred HHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhee
Confidence 3333333332210 00 112222333333332210 0000112334444445444433 23344444444433 3
Q ss_pred cCCChhHHHHHHHHHHHHHhhChh-HH---------HHhHHhhccccCCCch------HHHHHHHHHhhcccC--CCcHH
Q 002083 323 KSDSHNLKYMGIDALGRLIKTSPE-IA---------EQHQLAVIDCLEDPDD------TLKRKTFELLYKMTK--SSNVE 384 (969)
Q Consensus 323 ~s~d~NlrYvaL~~L~~I~~~~P~-l~---------~~h~~~I~~cL~D~D~------sIR~kaLdLL~~L~n--~~Nv~ 384 (969)
.+.|+..--.|=.+|..++...++ +. -.|.+.++.-|=||+. .+-+..++|+.++.. ..|+.
T Consensus 670 HsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d 749 (1005)
T KOG2274|consen 670 HSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD 749 (1005)
T ss_pred ecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH
Confidence 445555555555555555544321 21 2244455554444431 345555555555443 24555
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCc
Q 002083 385 VIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGD 437 (969)
Q Consensus 385 ~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd 437 (969)
.|+.-.+.-+.......+-..+|...+.+ .-++.+-.+++|..+..-.|.
T Consensus 750 ~IL~Avisrmq~ae~lsviQsLi~VfahL---~~t~~~~~l~FL~Slp~~~g~ 799 (1005)
T KOG2274|consen 750 QILRAVISRLQQAETLSVIQSLIMVFAHL---VHTDLDQLLNFLSSLPGPTGE 799 (1005)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hhCCHHHHHHHHHhCCCCCCC
Confidence 56665555554432233333343333333 334666666666665544443
No 99
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=22 Score=45.57 Aligned_cols=392 Identities=14% Similarity=0.206 Sum_probs=212.2
Q ss_pred CcchhHHHHHHHHhhhcc--------------CchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccch---HhhHHH
Q 002083 86 NLVLKRTGYLAVTLFLNE--------------DHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEET---IPAVLP 148 (969)
Q Consensus 86 ~~~~KRlgYLals~~~~~--------------~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el---~~~l~~ 148 (969)
.+..|+.+-+|+...... .+|---++-+.|..-+-+.++.+|..=--++-.|+..+- -+.+.+
T Consensus 51 ~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d 130 (1010)
T KOG1991|consen 51 PLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLD 130 (1010)
T ss_pred chhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHH
Confidence 345577777776654431 123344556666666666667777543334445555444 478899
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhCC----c-------ch----hhHHHHHHHhhcCCChhHHHHHHHHHHH----h
Q 002083 149 QVVELLGHSKEAVRRKAIMALHRFYQKSP----S-------SV----QHLVSNFRKRLCDNDPGVMGATLCPLFD----L 209 (969)
Q Consensus 149 ~V~~lL~d~~pyVRKkA~lal~kiy~~~P----e-------~v----~~l~~~l~~lL~D~D~~Vv~aAl~~L~e----i 209 (969)
-+..+|.+.....==.|++|++.+++.+- + .+ +.+.+.+..+|.+.+...+-- +.+++. +
T Consensus 131 ~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el-~klIlKifks~ 209 (1010)
T KOG1991|consen 131 KIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVEL-QKLILKIFKSL 209 (1010)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHH-HHHHHHHHHHH
Confidence 99999999887777889999999988763 1 12 344555566677665543211 112222 2
Q ss_pred hhhC-chh--hHHHHHHHHHHHHHHHhccCCCCcCCC----CCC------ChhHHHHHHHHHHHhCCCCh-----HHHhh
Q 002083 210 ITVD-VNS--YKDLVISFVSILKQVAERRLPKSYDYH----QMP------APFIQIRLLKILALLGSGDK-----QASEN 271 (969)
Q Consensus 210 ~~~~-p~~--~~~Lv~~lv~iLk~l~~~~lp~~y~y~----~v~------~PWlQikLLklL~~l~~~d~-----~~se~ 271 (969)
+..+ |.. -...+...+.++..++++.+|.+-.-- +-. .=|.--.+-|++.+|+.... +...+
T Consensus 210 ~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~ 289 (1010)
T KOG1991|consen 210 IYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQ 289 (1010)
T ss_pred HHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHH
Confidence 2222 110 012234556777777777777542110 112 33555568888999976421 11111
Q ss_pred hH------HHHHHhHhccCCCCC---CCchHHHHHHHHHHh----------------------------cC--------C
Q 002083 272 MY------TVVGDIFRKCDSSSN---IGNAVLYECICCVSS----------------------------IY--------A 306 (969)
Q Consensus 272 l~------~iL~~iL~~~~~~~N---i~~AVlyEaik~I~~----------------------------l~--------~ 306 (969)
|+ .+|..+|+-.+.-++ .+.-|+|-+++.+-+ .. .
T Consensus 290 ~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~ 369 (1010)
T KOG1991|consen 290 MFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEE 369 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhc
Confidence 11 112111111100001 122333333332211 00 0
Q ss_pred C--------------------------------------HHHHHHHHHHHHHHhcC----CChhHHHHHHHHHHHHHhh-
Q 002083 307 N--------------------------------------PKLIESAADVIARFLKS----DSHNLKYMGIDALGRLIKT- 343 (969)
Q Consensus 307 ~--------------------------------------~~ll~~ai~~L~~fL~s----~d~NlrYvaL~~L~~I~~~- 343 (969)
+ +..+.-+.+.+.++-.+ +++--++-+|..+..|+..
T Consensus 370 DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L 449 (1010)
T KOG1991|consen 370 DPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASIL 449 (1010)
T ss_pred CHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHH
Confidence 0 01112222333333222 2344677788877777632
Q ss_pred ---Ch--hHHHHh-HHhhccccCCCchHHHHHHHHHhhccc-----CCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 002083 344 ---SP--EIAEQH-QLAVIDCLEDPDDTLKRKTFELLYKMT-----KSSNVEVIVDRMIDYMISINDNHYKTEIASRCVE 412 (969)
Q Consensus 344 ---~P--~l~~~h-~~~I~~cL~D~D~sIR~kaLdLL~~L~-----n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~ 412 (969)
.| +.+... +.++|-.+.+|--++|.||..++...+ ++.|...+++--...+.+.++--+|.+++.++--
T Consensus 450 ~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~ 529 (1010)
T KOG1991|consen 450 LKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQS 529 (1010)
T ss_pred ccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHH
Confidence 33 222221 235677788888899999999999888 7788888888888888754555678888777654
Q ss_pred Hhhhc--C-CchH-HHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhC
Q 002083 413 LAEQF--A-PSNH-WFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIG 479 (969)
Q Consensus 413 laeky--a-p~~~-W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~ 479 (969)
+...- + +... -.-.+|-+++++..++- .+.+..+|+-|...|+++.--..+++-...++...+.+.
T Consensus 530 fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E-nd~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 530 FISNQEQADEKVSAHVPPIMQELLKLSNEVE-NDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHhcchhhhhhHhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 44321 1 1122 22346667777766643 344556777777777765443445666666666666665
No 100
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.33 E-value=3 Score=46.85 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhhcCccHHHHHHHHHHHH--cccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcc-h---
Q 002083 107 LIILIVNTIQKDLKSDNYLIVCAALNAVC--KLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSS-V--- 180 (969)
Q Consensus 107 lllL~iNtLqKDL~s~N~~vralALr~Ls--~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~-v--- 180 (969)
+--|..+.+..-++++++.+|..|+++|+ .+.+.+++...++.+.+.+....+.||-.|+-++.-+...+.-. +
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 33577788889999999999999999986 57788999998998888887679999999999999999987522 1
Q ss_pred ---------hhHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 181 ---------QHLVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 181 ---------~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
..+.+.+.+.|.+.++.+...|+-.|+.+.
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 135566777777778887777665555554
No 101
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.06 E-value=0.11 Score=42.84 Aligned_cols=49 Identities=29% Similarity=0.363 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHccc------ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 002083 124 YLIVCAALNAVCKLI------NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRF 172 (969)
Q Consensus 124 ~~vralALr~Ls~I~------~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~ki 172 (969)
|.+|..|+.+|+++. .....+.+++.+.++|.|+++.||.+|+.||.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 456777777777543 1223456677777777777778888888777643
No 102
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.93 E-value=0.18 Score=46.86 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=43.0
Q ss_pred HHHHhhhcCccHHHHHHHHHHHHcccccc-----hHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc
Q 002083 113 NTIQKDLKSDNYLIVCAALNAVCKLINEE-----TIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPS 178 (969)
Q Consensus 113 NtLqKDL~s~N~~vralALr~Ls~I~~~e-----l~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe 178 (969)
+...++|+|+.+-+|+-||..|.+++... -++.++......|.|+.+||-=.|+-++.-+...+|+
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34556777777777777777777654322 2445555556666677777777777777777776666
No 103
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=35 Score=45.68 Aligned_cols=139 Identities=9% Similarity=0.152 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhChhHHH----HhHHhhccccCCCchHH
Q 002083 292 AVLYECICCVSSIYANPKLIESAADVIARFLKSD-SHNLKYMGIDALGRLIKTSPEIAE----QHQLAVIDCLEDPDDTL 366 (969)
Q Consensus 292 AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~-d~NlrYvaL~~L~~I~~~~P~l~~----~h~~~I~~cL~D~D~sI 366 (969)
+=++|+|+-.+.+- +...++..+..+..+++++ .-+.|--+-..+..|+++.+.-.. ......|.-++|-+.++
T Consensus 1215 spmmeTi~~ci~~i-D~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv 1293 (1702)
T KOG0915|consen 1215 SPMMETINKCINYI-DISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESV 1293 (1702)
T ss_pred CcHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHH
Confidence 56788888655433 3567777888888888753 234454444455555555433333 33345566678999999
Q ss_pred HHH---HHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 002083 367 KRK---TFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVF 432 (969)
Q Consensus 367 R~k---aLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll 432 (969)
|+. |.-.|.+...++-.+..+++++.-+.. .++..+...+..|..++..-..-.+-|-+.++-++
T Consensus 1294 ~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~-k~es~~siscatis~Ian~s~e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1294 RKAFASAMGYLAKFSSPDQMQKLIETLLADLLG-KDESLKSISCATISNIANYSQEMLKNYASAILPLI 1361 (1702)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc-cCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHH
Confidence 987 888899999998899999988854433 23333444444444444322222244455555544
No 104
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.34 E-value=8.6 Score=43.18 Aligned_cols=68 Identities=22% Similarity=0.191 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
-..|...+.+.++.||+.|+.|+.-+...+.+...+.+..|...+...+..|...|+.++++++..++
T Consensus 29 ~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 29 DSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 34566899999999999999999999999999888888888888866688899999999999887654
No 105
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=13 Score=42.59 Aligned_cols=268 Identities=15% Similarity=0.232 Sum_probs=140.7
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHhhh--ccCchHHHH--HHHHHHhhhcCccHHHHHHHHHHHHcccccchH--------
Q 002083 76 IHAVKMTHDDNLVLKRTGYLAVTLFL--NEDHDLIIL--IVNTIQKDLKSDNYLIVCAALNAVCKLINEETI-------- 143 (969)
Q Consensus 76 ~~vIkl~sS~~~~~KRlgYLals~~~--~~~~dlllL--~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~-------- 143 (969)
.-++++..++++..+|-.-=++..+- .++..+++- .+-.+..-+++.|+-++-.+-+++++|....-.
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqae 249 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAE 249 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence 33456666666666654433333322 222222110 012233446788888887777888887654432
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC---cchh-hHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhh--Cchh
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP---SSVQ-HLVSNFRKRLCDN-DPGVMGATLCPLFDLITV--DVNS 216 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P---e~v~-~l~~~l~~lL~D~-D~~Vv~aAl~~L~ei~~~--~p~~ 216 (969)
+-+.+.+..++.++++-|+--|.+|+..+..... +.++ .-++.+.++|.|. -|.+.....| +..+..+ |...
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaC-IrnisihplNe~l 328 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVAC-IRNISIHPLNEVL 328 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHH-HhhcccccCcccc
Confidence 3477888999999999999999999887654321 1121 2467777777553 3444444333 2222211 1110
Q ss_pred --hHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhh-----HHHHHHhHhccCCCCCC
Q 002083 217 --YKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENM-----YTVVGDIFRKCDSSSNI 289 (969)
Q Consensus 217 --~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l-----~~iL~~iL~~~~~~~Ni 289 (969)
-..+...++++|+- -.++=+|+.....|..+..........+ ++.|..++.-. .
T Consensus 329 I~dagfl~pLVrlL~~--------------~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~--p--- 389 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRA--------------GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG--P--- 389 (550)
T ss_pred eecccchhHHHHHHhc--------------CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC--C---
Confidence 01223345666642 1356688888888888765322211111 22333344321 1
Q ss_pred CchHHHHHHHHHHhcC--CCH--HHHHH-HHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCch
Q 002083 290 GNAVLYECICCVSSIY--ANP--KLIES-AADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDD 364 (969)
Q Consensus 290 ~~AVlyEaik~I~~l~--~~~--~ll~~-ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~ 364 (969)
-+|.-|-.-||..+. .+. .++.. .+..|..++.+.+.+++=-+-.+|..+... .+|+..|++|.++|..
T Consensus 390 -vsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~-----v~~YarviEawd~P~~ 463 (550)
T KOG4224|consen 390 -VSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD-----VEHYARVIEAWDHPVQ 463 (550)
T ss_pred -hhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh-----hHHHHHHHHHhcCcch
Confidence 234444334443332 221 12221 344555556666666666555555544433 3567788888888855
Q ss_pred HHHHH
Q 002083 365 TLKRK 369 (969)
Q Consensus 365 sIR~k 369 (969)
.|+-+
T Consensus 464 gi~g~ 468 (550)
T KOG4224|consen 464 GIQGR 468 (550)
T ss_pred hHHHH
Confidence 55443
No 106
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.28 E-value=1.1 Score=55.06 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=89.0
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHHHcC-CCCcchHHHHHHhhcC----CCcchhHHHHHHHHhhhcc---C-------
Q 002083 40 LKRRISEPDIPKRKMKEYIIRLVYVEMLG-HDASFGYIHAVKMTHD----DNLVLKRTGYLAVTLFLNE---D------- 104 (969)
Q Consensus 40 iR~~f~~~~~~~~~~ke~l~KLiyl~mlG-~Dvsf~~~~vIkl~sS----~~~~~KRlgYLals~~~~~---~------- 104 (969)
|+..+.+..++.. ++...++++...- +...-..-++..|+.+ ++..++..+.|++..+.+. +
T Consensus 400 i~~~I~~~~~~~~---ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~ 476 (618)
T PF01347_consen 400 IKDLIKSKKLTDD---EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFC 476 (618)
T ss_dssp HHHHHHTT-S-HH---HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHcCCCCHH---HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccc
Confidence 4444555455443 3444444444444 3322222233344443 2345666677666555431 1
Q ss_pred --------chHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCC---CChHHHHHHHHHHHHHH
Q 002083 105 --------HDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGH---SKEAVRRKAIMALHRFY 173 (969)
Q Consensus 105 --------~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d---~~pyVRKkA~lal~kiy 173 (969)
.++.--+.+.+.+-....+...+-++|++|++++.++.++.+ ...+.+ ....||..|+.|+.|+-
T Consensus 477 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l----~~~i~~~~~~~~~~R~~Ai~Alr~~~ 552 (618)
T PF01347_consen 477 DPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVL----LPYIEGKEEVPHFIRVAAIQALRRLA 552 (618)
T ss_dssp ----SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHH----HTTSTTSS-S-HHHHHHHHHTTTTGG
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHH----HhHhhhccccchHHHHHHHHHHHHHh
Confidence 124445556666666677888899999999999988766554 455544 47899999999999998
Q ss_pred hhCCcchhh-HHHHHHHhhcCCChhHHHHHHHHHHH
Q 002083 174 QKSPSSVQH-LVSNFRKRLCDNDPGVMGATLCPLFD 208 (969)
Q Consensus 174 ~~~Pe~v~~-l~~~l~~lL~D~D~~Vv~aAl~~L~e 208 (969)
..+|+.+.. +++.+.. ...++-|..+|+.+|++
T Consensus 553 ~~~~~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 553 KHCPEKVREILLPIFMN--TTEDPEVRIAAYLILMR 586 (618)
T ss_dssp GT-HHHHHHHHHHHHH---TTS-HHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHhcC--CCCChhHHHHHHHHHHh
Confidence 888876654 3333322 23577788888766554
No 107
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.24 E-value=0.11 Score=42.87 Aligned_cols=49 Identities=33% Similarity=0.344 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHhhCCcchh----hHHHHHHHhhcCCChhHHHHHHHHHH
Q 002083 159 EAVRRKAIMALHRFYQKSPSSVQ----HLVSNFRKRLCDNDPGVMGATLCPLF 207 (969)
Q Consensus 159 pyVRKkA~lal~kiy~~~Pe~v~----~l~~~l~~lL~D~D~~Vv~aAl~~L~ 207 (969)
|.||..|+.++..+....++.+. ++++.|..+|.|.++.|..+|+.+|-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 57999999999988777776654 57788888899999999998887664
No 108
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=2.7 Score=47.96 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=76.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhh-----HHHHHHHhh-cCCChhHHHHHHHHHHHhhhhCchhhHHHHH
Q 002083 149 QVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQH-----LVSNFRKRL-CDNDPGVMGATLCPLFDLITVDVNSYKDLVI 222 (969)
Q Consensus 149 ~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~-----l~~~l~~lL-~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~ 222 (969)
.+...++|+++-||++|+-.+..+.+-+|..... ...+|...| .|.+-.|...|+.+++.++++++.....+.+
T Consensus 128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~ 207 (342)
T KOG2160|consen 128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK 207 (342)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 3445889999999999999999999999986553 445555555 4555567788999999999988765433331
Q ss_pred -HHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCCh
Q 002083 223 -SFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDK 266 (969)
Q Consensus 223 -~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~ 266 (969)
.-+..|..++.. +-.+.-+|.|.+-++..|...++
T Consensus 208 ~~G~~~L~~vl~~---------~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 208 LNGYQVLRDVLQS---------NNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred cCCHHHHHHHHHc---------CCcchHHHHHHHHHHHHHHHhhh
Confidence 224555555432 11356788999988888765444
No 109
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=93.19 E-value=12 Score=44.69 Aligned_cols=238 Identities=17% Similarity=0.144 Sum_probs=109.8
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCC-----ChhHHHHHHHHHHHhhhhCchhhHHHH---
Q 002083 155 GHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDN-----DPGVMGATLCPLFDLITVDVNSYKDLV--- 221 (969)
Q Consensus 155 ~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~-----D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--- 221 (969)
...++-|+.-|.-||..+...+|..-. ...+.+.+.|... ++.+..-...+|+=+....+.....++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 345677888888888888877776543 2345555555332 455554444444433323333222332
Q ss_pred ---HHHHHHHHHHHhccCCCCcC--CCCCCChhHHHHHHHHHHHhCC---CC-h-HH---HhhhHHHHHHhHhccCCCCC
Q 002083 222 ---ISFVSILKQVAERRLPKSYD--YHQMPAPFIQIRLLKILALLGS---GD-K-QA---SENMYTVVGDIFRKCDSSSN 288 (969)
Q Consensus 222 ---~~lv~iLk~l~~~~lp~~y~--y~~v~~PWlQikLLklL~~l~~---~d-~-~~---se~l~~iL~~iL~~~~~~~N 288 (969)
..++..|...+...-...+. ...-.+.-....+||++-.+.. .. . .. ...+..+|..++.. ....+
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~-~~~~~ 200 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPP-PPSSP 200 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhcc-CCCCC
Confidence 33444444333221111111 0011244456677777754422 11 1 11 22334455554311 22333
Q ss_pred CCchHHHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHHhcCC-Chh---HHHHHHHHHHHHHhh
Q 002083 289 IGNAVLYECICCVSSIYA---------------------NPKLIESAADVIARFLKSD-SHN---LKYMGIDALGRLIKT 343 (969)
Q Consensus 289 i~~AVlyEaik~I~~l~~---------------------~~~ll~~ai~~L~~fL~s~-d~N---lrYvaL~~L~~I~~~ 343 (969)
...++.-.+|+++.++.. +..++...++.|-+.+... +.+ .---.|..|.+++..
T Consensus 201 ~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~ 280 (446)
T PF10165_consen 201 PLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA 280 (446)
T ss_pred cchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh
Confidence 345677777777776531 1122233333333333321 112 222345566666665
Q ss_pred ChhHHHHhHHhhccccCCC------chHHHHHHHHHhhcccCCCcHHHHHHHHHHHHh
Q 002083 344 SPEIAEQHQLAVIDCLEDP------DDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMI 395 (969)
Q Consensus 344 ~P~l~~~h~~~I~~cL~D~------D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~ 395 (969)
+...-+.-+..|+--++|- ..++|-+-+.++.... .+++..+.||+-.+-
T Consensus 281 ~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~--~~~k~~vaellf~Lc 336 (446)
T PF10165_consen 281 AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD--PQLKDAVAELLFVLC 336 (446)
T ss_pred cHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC--chHHHHHHHHHHHHH
Confidence 5322222223344333321 1356666666654433 667777777766553
No 110
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=19 Score=41.04 Aligned_cols=220 Identities=15% Similarity=0.190 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-hHHHHHHHhhcCC--ChhHHH
Q 002083 124 YLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-HLVSNFRKRLCDN--DPGVMG 200 (969)
Q Consensus 124 ~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-~l~~~l~~lL~D~--D~~Vv~ 200 (969)
....++|-|++..=... .+.++... ++-..++.-+-||++-++.++-+..|+++. .-...+.++|.++ +..|..
T Consensus 89 ~ck~~~A~r~la~~~ga--~~~~it~~-~la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~ 165 (461)
T KOG4199|consen 89 ECKKSLAHRVLAGKNGA--HDALITLL-ELAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTL 165 (461)
T ss_pred HHhhhHHHHHHhccCCC--cchhhhHH-HHhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHH
Confidence 56667888888753222 12223322 356678889999999999999999999876 3344555666442 333443
Q ss_pred HHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHH-HhCCC-ChHHHhhhHHHHHH
Q 002083 201 ATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILA-LLGSG-DKQASENMYTVVGD 278 (969)
Q Consensus 201 aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~-~l~~~-d~~~se~l~~iL~~ 278 (969)
+.+..+..-|..+. +-+| .|+-.++++++. -+.+. ..+...++++.+.-
T Consensus 166 ~~~~~v~~Ac~~hE------------~nrQ-----------------~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~ 216 (461)
T KOG4199|consen 166 LTLQWLQKACIMHE------------VNRQ-----------------LFMELKILELILQVLNREGKTRTVRELYDAIRA 216 (461)
T ss_pred HHHHHHHHHHHHhH------------HHHH-----------------HHHHhhHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 33333322221111 1111 144445555554 23222 22456677777766
Q ss_pred hHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH-----hHH
Q 002083 279 IFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ-----HQL 353 (969)
Q Consensus 279 iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~-----h~~ 353 (969)
++.-.|..-- .+-.|+-+|+|.... .+...++.+..++ +|++---.+-.|..|+-++ ++.+. -..
T Consensus 217 l~~dDDiRV~--fg~ah~hAr~ia~e~----~l~~L~Eal~A~~---dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~ 286 (461)
T KOG4199|consen 217 LLTDDDIRVV--FGQAHGHARTIAKEG----ILTALTEALQAGI---DPDSLVSLSTTLKALAVRD-EICKSIAESGGLD 286 (461)
T ss_pred hcCCCceeee--cchhhHHHHHHHHhh----hHHHHHHHHHccC---CccHHHHHHHHHHHHHHHH-HHHHHHHHccCHH
Confidence 6554332211 233355566665422 2223344444454 3555555555666655443 33222 245
Q ss_pred hhccccCCC-c---hHHHHHHHHHhhcccCCCcHHH
Q 002083 354 AVIDCLEDP-D---DTLKRKTFELLYKMTKSSNVEV 385 (969)
Q Consensus 354 ~I~~cL~D~-D---~sIR~kaLdLL~~L~n~~Nv~~ 385 (969)
.++.|++|. + .++-+.+|.+|.+++..+.++.
T Consensus 287 tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs 322 (461)
T KOG4199|consen 287 TLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKS 322 (461)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHH
Confidence 688888873 3 3455778999999887666553
No 111
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.10 E-value=6.5 Score=49.51 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=76.8
Q ss_pred cCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCC----CChHHHHHHHHHHHHHHhhCCcchh----hHHHHHHHh-
Q 002083 120 KSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGH----SKEAVRRKAIMALHRFYQKSPSSVQ----HLVSNFRKR- 190 (969)
Q Consensus 120 ~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d----~~pyVRKkA~lal~kiy~~~Pe~v~----~l~~~l~~l- 190 (969)
.+.-+.++..|+|++|..+.+..+....|.|.++|.+ .+.-|----.-++.-+.+.+|+.-. .+.+.+..+
T Consensus 501 ~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 501 MDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred cCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 3556788999999999999998888888887777754 5666777777788888999987432 233333332
Q ss_pred -hcCCChhHHHHHHHHHHHhhhh--Cch-hhHHHHHHHHHHHHH
Q 002083 191 -LCDNDPGVMGATLCPLFDLITV--DVN-SYKDLVISFVSILKQ 230 (969)
Q Consensus 191 -L~D~D~~Vv~aAl~~L~ei~~~--~p~-~~~~Lv~~lv~iLk~ 230 (969)
-..+||.|..-+--.|.+++.. +-. ....++|.++++|..
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~ 624 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQL 624 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcC
Confidence 2457887777776666666642 112 234567899998864
No 112
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.93 E-value=23 Score=41.29 Aligned_cols=256 Identities=15% Similarity=0.131 Sum_probs=126.8
Q ss_pred cCCCcchhHHHHHHHHhhhccC---c------hHHHHHHHHHHhhhcC-------ccHHHHHHHHHHHHccc-ccch---
Q 002083 83 HDDNLVLKRTGYLAVTLFLNED---H------DLIILIVNTIQKDLKS-------DNYLIVCAALNAVCKLI-NEET--- 142 (969)
Q Consensus 83 sS~~~~~KRlgYLals~~~~~~---~------dlllL~iNtLqKDL~s-------~N~~vralALr~Ls~I~-~~el--- 142 (969)
++.+-..|.=+|+.+...+... + +-+-+.+..+++|+.+ .+.-...-|||+++.+. .+++
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 4556677778888887766432 1 2345889999999987 45677788999998753 3333
Q ss_pred -----HhhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhCCcchh-hHHHHHHHhhcC-----CChhHHHHHHHHHHHhh
Q 002083 143 -----IPAVLPQVVELLGHS-KEAVRRKAIMALHRFYQKSPSSVQ-HLVSNFRKRLCD-----NDPGVMGATLCPLFDLI 210 (969)
Q Consensus 143 -----~~~l~~~V~~lL~d~-~pyVRKkA~lal~kiy~~~Pe~v~-~l~~~l~~lL~D-----~D~~Vv~aAl~~L~ei~ 210 (969)
..-++......+.++ .+-.--++.+.+++.-+..|..+. +....+...+.+ ...+|+.-.+.++..++
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 333344444455443 343444555666666666666543 334444444322 12233444444444444
Q ss_pred hhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCC
Q 002083 211 TVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIG 290 (969)
Q Consensus 211 ~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~ 290 (969)
...|..+...+ +-|+..-+-+++... +........++........ .|
T Consensus 163 ~q~p~~M~~~~-------------------------~~W~~~l~~~l~~~~----k~ir~~a~~l~~~~~~~l~--~~-- 209 (372)
T PF12231_consen 163 SQFPQQMIKHA-------------------------DIWFPILFPDLLSSA----KDIRTKAISLLLEAKKCLG--PN-- 209 (372)
T ss_pred HHHHHHHHHHH-------------------------HHHHHHHHHHHhhcc----hHHHHHHHHHHHHHHHHhC--hh--
Confidence 33333211111 226554444433221 1111111122211111110 01
Q ss_pred chHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhcCCChhHHHH-HHHHHHHHHhh----ChhHHHHhHHhhccccCCCc
Q 002083 291 NAVLYECICCVSS--IYANPKLIESAADVIARFLKSDSHNLKYM-GIDALGRLIKT----SPEIAEQHQLAVIDCLEDPD 363 (969)
Q Consensus 291 ~AVlyEaik~I~~--l~~~~~ll~~ai~~L~~fL~s~d~NlrYv-aL~~L~~I~~~----~P~l~~~h~~~I~~cL~D~D 363 (969)
.-+-..+.-++. +.+. .+.+...+.|..++.+++...--. ....+..+... +-.++.+....+-.|++++|
T Consensus 210 -~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d 287 (372)
T PF12231_consen 210 -KELSKSVLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSD 287 (372)
T ss_pred -HHHHHHHHHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCC
Confidence 111222222221 1223 566777788888887743322222 22233333321 12445566666667999999
Q ss_pred hHHHHHHHHH
Q 002083 364 DTLKRKTFEL 373 (969)
Q Consensus 364 ~sIR~kaLdL 373 (969)
+.+|..|+.-
T Consensus 288 ~~~k~~A~~a 297 (372)
T PF12231_consen 288 PQVKIQAFKA 297 (372)
T ss_pred HHHHHHHHHH
Confidence 9999888753
No 113
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.80 E-value=3.6 Score=43.18 Aligned_cols=152 Identities=19% Similarity=0.267 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhh-CCcchhh----------------HHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHH
Q 002083 161 VRRKAIMALHRFYQK-SPSSVQH----------------LVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVIS 223 (969)
Q Consensus 161 VRKkA~lal~kiy~~-~Pe~v~~----------------l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~ 223 (969)
||-.|+.|+.-+.+. +|-.+-. -..-+.-++.|.++.|..+|+.++..++.. .+.|
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~~------ 74 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG-SKPF------ 74 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc-cHHH------
Confidence 677888888877777 4332211 122234457899999999999888777633 2222
Q ss_pred HHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHh
Q 002083 224 FVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSS 303 (969)
Q Consensus 224 lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~ 303 (969)
|.+.-+.+ .+.-.| .|+... + + ..-.++...|...|++. .| .+++-+++||+..
T Consensus 75 ----L~~Ae~~~-~~~~sF----tslS~t-L-------a----~~i~~lH~~Ll~~L~~E---~~--~~~l~q~lK~la~ 128 (182)
T PF13251_consen 75 ----LAQAEESK-GPSGSF----TSLSST-L-------A----SMIMELHRGLLLALQAE---KS--PPVLTQLLKCLAV 128 (182)
T ss_pred ----HHHHHhcC-CCCCCc----ccHHHH-H-------H----HHHHHHHHHHHHHHhcc---cc--cHHHHHHHHHHHH
Confidence 11111111 000011 222210 0 0 01123334455555542 22 3677777777754
Q ss_pred c---CC----CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh
Q 002083 304 I---YA----NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP 345 (969)
Q Consensus 304 l---~~----~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P 345 (969)
+ .| ..+++..++..+..++.+.|+|++-.+|.++..++...+
T Consensus 129 Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 129 LVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 4 22 367888899999999999999999999999998887654
No 114
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.70 E-value=17 Score=41.51 Aligned_cols=186 Identities=16% Similarity=0.196 Sum_probs=105.0
Q ss_pred HHHHHhc-CCCChHHHHHHHHHHHHHHhhCCcch----h-hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH
Q 002083 148 PQVVELL-GHSKEAVRRKAIMALHRFYQKSPSSV----Q-HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV 221 (969)
Q Consensus 148 ~~V~~lL-~d~~pyVRKkA~lal~kiy~~~Pe~v----~-~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv 221 (969)
|-..+.+ .+.+....--|+-|+..+..=..+.- + ..++.|..+|.+.+..|.-.++-+|-.|.- +...|++.+
T Consensus 117 pRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAG-DS~~~RD~v 195 (526)
T COG5064 117 PRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAG-DSEGCRDYV 195 (526)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccC-CchhHHHHH
Confidence 3344445 45566666678888877765433221 1 357778888888888888888777766543 333444433
Q ss_pred HHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHH
Q 002083 222 ISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCV 301 (969)
Q Consensus 222 ~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I 301 (969)
+|+-.| ..+| .+|.. +.+.-+++..+.=++
T Consensus 196 ----------------------------L~~gal-----------------eplL-~ll~s----s~~~ismlRn~TWtL 225 (526)
T COG5064 196 ----------------------------LQCGAL-----------------EPLL-GLLLS----SAIHISMLRNATWTL 225 (526)
T ss_pred ----------------------------HhcCch-----------------HHHH-HHHHh----ccchHHHHHHhHHHH
Confidence 111111 0111 11110 000113333333334
Q ss_pred HhcC------CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH-----hHHhhccccCCCchHHHHHH
Q 002083 302 SSIY------ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ-----HQLAVIDCLEDPDDTLKRKT 370 (969)
Q Consensus 302 ~~l~------~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~-----h~~~I~~cL~D~D~sIR~ka 370 (969)
.++. |+-.-+..++..|.+++.+.|+++--=++.+|..|+.-.-+.++- .-..++++|.+++.-|..-+
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa 305 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA 305 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence 3331 233456677788888888888888877888887776543222211 11246677788887888888
Q ss_pred HHHhhcccCCCcHH
Q 002083 371 FELLYKMTKSSNVE 384 (969)
Q Consensus 371 LdLL~~L~n~~Nv~ 384 (969)
|..+-.+++.+-.+
T Consensus 306 lR~vGNIVTG~D~Q 319 (526)
T COG5064 306 LRSVGNIVTGSDDQ 319 (526)
T ss_pred HHhhcCeeecCccc
Confidence 88888877766544
No 115
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=92.64 E-value=35 Score=42.72 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=140.2
Q ss_pred CCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc--ccchHhhHHHHHHHhcCCCChHH
Q 002083 84 DDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI--NEETIPAVLPQVVELLGHSKEAV 161 (969)
Q Consensus 84 S~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~--~~el~~~l~~~V~~lL~d~~pyV 161 (969)
+.+...|++..-|+..++..- ..-.|..|---..++=+.++.-||+++..+. -||-=..++..+++.|.|+.--|
T Consensus 281 ~~~~~~k~Ll~WyfE~~LK~l---y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKi 357 (988)
T KOG2038|consen 281 NKRLRDKILLMWYFEHELKIL---YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKI 357 (988)
T ss_pred ccccccceehHHHHHHHHHHH---HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhh
Confidence 566666666666666665431 1222333333334456788888998887653 46777788899999999999999
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhH--HHHHHHHHHHhhhhCc--hhhHHHHHHHHHHHHHHHhccCC
Q 002083 162 RRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGV--MGATLCPLFDLITVDV--NSYKDLVISFVSILKQVAERRLP 237 (969)
Q Consensus 162 RKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~V--v~aAl~~L~ei~~~~p--~~~~~Lv~~lv~iLk~l~~~~lp 237 (969)
-.+|..-|..+...+|..---.++.+.+++--.+.+- ...|++.|..+.-.+. .....|+..++.+.+.++....-
T Consensus 358 askAsylL~~L~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~ 437 (988)
T KOG2038|consen 358 ASKASYLLEGLLAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDK 437 (988)
T ss_pred hhhHHHHHHHHHhhCCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999976667788888775554443 2345666655543332 22334444344444443321000
Q ss_pred CCcCCCCCCChhHHHHHHHHHHHhC---CCCh--HHH-hhhH----HHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCC
Q 002083 238 KSYDYHQMPAPFIQIRLLKILALLG---SGDK--QAS-ENMY----TVVGDIFRKCDSSSNIGNAVLYECICCVSSIYAN 307 (969)
Q Consensus 238 ~~y~y~~v~~PWlQikLLklL~~l~---~~d~--~~s-e~l~----~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~ 307 (969)
. . .+=.+-...-. +.+. ..+ +... .+|..+|+ -+-|++-.-..+
T Consensus 438 d---------~---~k~~k~~~k~kks~k~~k~e~~~~e~~~e~nsrllSAlLT--------------GvNRAfPfaq~~ 491 (988)
T KOG2038|consen 438 D---------N---RKDDKGAAKKKKSNKKDKKEEVSTESPIELNSRLLSALLT--------------GVNRAFPFAQTA 491 (988)
T ss_pred h---------h---hhcccchhhcccccccchhhhhcccchhhhhHHHHHHHHh--------------cccccCCcccCc
Confidence 0 0 00000000000 0000 000 0000 11222222 111222111223
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCC
Q 002083 308 PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDP 362 (969)
Q Consensus 308 ~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~ 362 (969)
.+.++.-+..|-.+..+.+-|.-.-+|-.|.++...+.-+-.+|+..++.-|-||
T Consensus 492 ddk~~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~~~~vSDRyY~aLY~kLLdP 546 (988)
T KOG2038|consen 492 DDKLEEQMKTLFKLTHSSNFNTSVQALMLLFQVSKKNDYVSDRYYRALYRKLLDP 546 (988)
T ss_pred hHHHHHHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCc
Confidence 3444555777888888888888888888888888776555556777777777676
No 116
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.64 E-value=42 Score=44.93 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHHHHh---hhccc-----cCCCcHH----------------HHHHHHHHhcCCChhHHhHHHHHHH
Q 002083 524 DETIKAYAITALMKIYAFE---IAAGR-----KVDMLPE----------------CQSLIEELSASHSTDLQQRAYELEA 579 (969)
Q Consensus 524 ~~~Vk~~ILtAl~KL~~~~---~~~~~-----~~~~~~~----------------~~~lL~~~l~s~d~EVQqRA~Ey~~ 579 (969)
.-.||.+.|.-++++|-+. ...|. ..+|.|. +..+|..++..++.++|+|-.-++.
T Consensus 389 k~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~ 468 (1266)
T KOG1525|consen 389 KIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQ 468 (1266)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Confidence 4579999999999999851 11121 1233221 2244555566778888888887777
Q ss_pred HhcC
Q 002083 580 VTGL 583 (969)
Q Consensus 580 LL~~ 583 (969)
+|..
T Consensus 469 ~l~~ 472 (1266)
T KOG1525|consen 469 LLAG 472 (1266)
T ss_pred HHhc
Confidence 7653
No 117
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=92.64 E-value=0.56 Score=49.43 Aligned_cols=134 Identities=17% Similarity=0.097 Sum_probs=96.1
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCcc--HHHHHHHHHHHHcccccchHhhHHHHHHHh
Q 002083 76 IHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDN--YLIVCAALNAVCKLINEETIPAVLPQVVEL 153 (969)
Q Consensus 76 ~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N--~~vralALr~Ls~I~~~el~~~l~~~V~~l 153 (969)
-.+-.+..+..++.|-++++.+........+- .+..+.+-+..-+ ..+=+++-+.++.+.... +.+.+.+.+-
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W 128 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKW 128 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHH
Confidence 34566889999999999999987765443321 3455555555433 233345556666553322 5677888999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchh
Q 002083 154 LGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNS 216 (969)
Q Consensus 154 L~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~ 216 (969)
+.+.++++|+.|+.++.+.++. +....++..+...+.|.+..|.-+.-.+|.++.+.+|+.
T Consensus 129 ~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 129 AKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp HHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred HhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 9999999999999999998887 555667788888889999999998888899998887764
No 118
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=44 Score=43.35 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=42.2
Q ss_pred ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc-chhhHHHHHHHhh
Q 002083 139 NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPS-SVQHLVSNFRKRL 191 (969)
Q Consensus 139 ~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe-~v~~l~~~l~~lL 191 (969)
+|++++.++..+...|+|..-.||..|+-++.|+....|- +..+.+..+.+++
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~ 388 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLF 388 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhc
Confidence 3578889999999999999999999999999999999883 3334445554544
No 119
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.20 E-value=13 Score=41.19 Aligned_cols=233 Identities=16% Similarity=0.161 Sum_probs=105.4
Q ss_pred HHhhhcCccHHHHHHHHHHHHccc--------ccchHhhHHHHHHHhcCCCChHHH--HHHHHHHHHHHhhCCcchhhHH
Q 002083 115 IQKDLKSDNYLIVCAALNAVCKLI--------NEETIPAVLPQVVELLGHSKEAVR--RKAIMALHRFYQKSPSSVQHLV 184 (969)
Q Consensus 115 LqKDL~s~N~~vralALr~Ls~I~--------~~el~~~l~~~V~~lL~d~~pyVR--KkA~lal~kiy~~~Pe~v~~l~ 184 (969)
|..-|+|.++.+|+-|++.|+.+. +..-++.+.......|.|..- ++ =+|+.++.++-...++....++
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~l~gl~~L~~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPALKGLLALVKMKNFSPESAVKIL 82 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHHHHHHHHHHhCcCCChhhHHHHH
Confidence 455678888899998888887542 222344455555555544321 11 2333333333333334333333
Q ss_pred HHHHHhhcC--CChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 185 SNFRKRLCD--NDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 185 ~~l~~lL~D--~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
..+.+...- .-..+...+..+|..+..+.....+.+-..|+.-+-++++ |=.||-.-+.+.+++..+.
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~----------gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLID----------GEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhc----------cCCCHHHHHHHHHHHHHHH
Confidence 333221110 0111222333333333333222222222334443333333 2246666555555554432
Q ss_pred CC--ChHHHhhhHHHHHHhHhcc-CCCCCCCchHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 002083 263 SG--DKQASENMYTVVGDIFRKC-DSSSNIGNAVLYECICCVS--SIYANPKLIESAADVIARFLKSDSHNLKYMGIDAL 337 (969)
Q Consensus 263 ~~--d~~~se~l~~iL~~iL~~~-~~~~Ni~~AVlyEaik~I~--~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L 337 (969)
.. -....+++++++....--+ ....|-.+.|--|-.+.-+ .+..++.+-..++.-|..=|.+..++.|-=+|+.|
T Consensus 153 ~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL 232 (262)
T PF14500_consen 153 QEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTL 232 (262)
T ss_pred HhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 21 1233455555554433211 0111111222222222111 11233444445555566666677777887777777
Q ss_pred HHHHhhC-hhHHHHhHHhhccc
Q 002083 338 GRLIKTS-PEIAEQHQLAVIDC 358 (969)
Q Consensus 338 ~~I~~~~-P~l~~~h~~~I~~c 358 (969)
..-+..+ +..+.+|...|...
T Consensus 233 ~~c~~~y~~~~~~~~~~~iw~~ 254 (262)
T PF14500_consen 233 KACIENYGADSLSPHWSTIWNA 254 (262)
T ss_pred HHHHHHCCHHHHHHHHHHHHHH
Confidence 7777666 45566776666543
No 120
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.55 E-value=52 Score=42.35 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHH-HhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRF-YQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~ki-y~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~ 212 (969)
+-.-|...+.+..+.+|-.=-.|+..| +.-+|+.-+.+++++...|...|..++..|+..|+++++.
T Consensus 90 irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ 157 (1010)
T KOG1991|consen 90 IRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKT 157 (1010)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHH
Confidence 444556666666666665544555344 4456988889999999999999999999999999998874
No 121
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.54 E-value=63 Score=43.32 Aligned_cols=268 Identities=12% Similarity=0.149 Sum_probs=135.7
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhh-HHHHHHHhhcCCChh---HHHHHHHHHHHhhhhCchhhHHH
Q 002083 145 AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQH-LVSNFRKRLCDNDPG---VMGATLCPLFDLITVDVNSYKDL 220 (969)
Q Consensus 145 ~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~-l~~~l~~lL~D~D~~---Vv~aAl~~L~ei~~~~p~~~~~L 220 (969)
.++.-|...|..+.+-.++.|-.-...+....++.+.+ +-..+...++-..+. +...-.-+++++-...|+.....
T Consensus 181 e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~v 260 (1266)
T KOG1525|consen 181 ELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAV 260 (1266)
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHH
Confidence 44455555555566667777766666666666665554 334444444332221 11111122333333334433333
Q ss_pred HHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC-CCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHH
Q 002083 221 VISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG-SGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECIC 299 (969)
Q Consensus 221 v~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~-~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik 299 (969)
+|.|..=|.. -+.....+.++++.++- ..+...++...++...+|.+.. -+...|.+||++
T Consensus 261 ip~l~~eL~s---------------e~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~---D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 261 IPQLEFELLS---------------EQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFN---DISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHhc---------------chHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhc---cCChhhhhhHHH
Confidence 4444333221 14455666777776542 2222333334455555555431 123579999999
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHHh-cCCChhHHHH--HHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhh
Q 002083 300 CVSSIY-ANPKLIESAADVIARFL-KSDSHNLKYM--GIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLY 375 (969)
Q Consensus 300 ~I~~l~-~~~~ll~~ai~~L~~fL-~s~d~NlrYv--aL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~ 375 (969)
++-++. .+|+..+ +...+..+- .+.|++.|.- ++-....+....-.++..-...+-+.+.|.-..||+.|+.=|.
T Consensus 323 ~~~~~l~~~~~~~~-~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAK-ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhh-HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 987654 3444333 223222221 3344444332 2111111111111122222234455677877888888877665
Q ss_pred cccC-------------CCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhh-cCCchHHHHHHHHHHHh
Q 002083 376 KMTK-------------SSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQ-FAPSNHWFIQTMNKVFE 433 (969)
Q Consensus 376 ~L~n-------------~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laek-yap~~~W~Id~L~~ll~ 433 (969)
.+=+ ..++.-|-++|+.++.. .|.++| .+|.+|...+.. |..+.+--+.-|.++|.
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~-~~~~~r-~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~ 471 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYE-NDLDDR-LLVERILAEYLVPYPLSTQERMKHLYQLLA 471 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhh-ccccHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Confidence 4433 24566777888888765 566777 777777655554 34455666666666664
No 122
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.75 E-value=1.9 Score=40.20 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC---cchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSP---SSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN 215 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P---e~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~ 215 (969)
.+..+...|.|+-+.||--|+.-|.++.+... ..++.++..+...|.|.|+.|-.+|+..|..++...|+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34566778899999999999999999999876 23346778888899999999999999999988877765
No 123
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.69 E-value=29 Score=47.31 Aligned_cols=234 Identities=17% Similarity=0.189 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc----ccchHhhHHHHHHHhcCCCChHHHHHH-HHHHHHHHhhCCcch
Q 002083 106 DLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI----NEETIPAVLPQVVELLGHSKEAVRRKA-IMALHRFYQKSPSSV 180 (969)
Q Consensus 106 dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~----~~el~~~l~~~V~~lL~d~~pyVRKkA-~lal~kiy~~~Pe~v 180 (969)
++--+..-.+..+|.++||..||.|-.+++++. .+-.+..+..-..+.|.+..+.|+|.- .+|+..+++..-...
T Consensus 872 ~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~ 951 (2067)
T KOG1822|consen 872 EVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIG 951 (2067)
T ss_pred HHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCC
Confidence 344566667778899999999998887777653 233344555666666777666666654 555555555443333
Q ss_pred h--hHH---HHHHHhhcCCCh-hHHHHHHHHHHHhhhhCchhhHHHH-HHHHHHHHHHHhccCCCCcCCCCCCChhHHHH
Q 002083 181 Q--HLV---SNFRKRLCDNDP-GVMGATLCPLFDLITVDVNSYKDLV-ISFVSILKQVAERRLPKSYDYHQMPAPFIQIR 253 (969)
Q Consensus 181 ~--~l~---~~l~~lL~D~D~-~Vv~aAl~~L~ei~~~~p~~~~~Lv-~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQik 253 (969)
. ++. ..+..+-.|..+ -|...++.++.-+.......|+.++ +.+.-+++-++ +.|-....
T Consensus 952 s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLl-------------s~p~~~~e 1018 (2067)
T KOG1822|consen 952 SGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLL-------------SVPTSHVE 1018 (2067)
T ss_pred CchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcC-------------CCCcchhh
Confidence 2 333 345555567655 7888888887655544444455554 44444444332 22333233
Q ss_pred HHHHHHH--------------hCC-----CChHHHhhhH--HHHHHhHhccCCCCCCCchHHHHHHHHHHhcC---CCHH
Q 002083 254 LLKILAL--------------LGS-----GDKQASENMY--TVVGDIFRKCDSSSNIGNAVLYECICCVSSIY---ANPK 309 (969)
Q Consensus 254 LLklL~~--------------l~~-----~d~~~se~l~--~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~---~~~~ 309 (969)
+.+-..+ +++ .++.....+. .+....+.. ++.+ .-+..++++|+.+++ +-.-
T Consensus 1019 v~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~alll--s~~d--~lnqa~ai~clqqlhlFapr~~ 1094 (2067)
T KOG1822|consen 1019 VHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLL--SHSD--PLNQAAAIKCLQQLHLFAPRHV 1094 (2067)
T ss_pred hhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhc--CCCc--cchHHHHHHHHHHHHhhcchhc
Confidence 3222222 111 0000000010 111122221 1122 245667788876553 2111
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhc
Q 002083 310 LIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVI 356 (969)
Q Consensus 310 ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~ 356 (969)
-.+..+-.|+.+|.+.---+|-..+.++.+++++.-..+..|...+.
T Consensus 1095 n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~ 1141 (2067)
T KOG1822|consen 1095 NLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLA 1141 (2067)
T ss_pred cHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhh
Confidence 23445667777777665556666777888888877666666655433
No 124
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=90.15 E-value=95 Score=43.30 Aligned_cols=127 Identities=11% Similarity=0.204 Sum_probs=79.4
Q ss_pred HhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhc----CCCH-----HHHHHHHHHHHHHhc-CCChhHHHHHHHHHH
Q 002083 269 SENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSI----YANP-----KLIESAADVIARFLK-SDSHNLKYMGIDALG 338 (969)
Q Consensus 269 se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l----~~~~-----~ll~~ai~~L~~fL~-s~d~NlrYvaL~~L~ 338 (969)
...+.+++...+...-.++|. .|.+.|+..+-++ .... .+-+...+++..++. +.+.++|-++|+++.
T Consensus 1131 W~~iW~~l~~hf~~vg~~~n~--~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~ 1208 (1780)
T PLN03076 1131 WSSIWHVLSDFFVTIGCSENL--SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVS 1208 (1780)
T ss_pred hHhHHHHHHHHHHHhcCCcch--hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 345667777766554344553 4666777655332 2222 223345566666554 466899999999999
Q ss_pred HHHhhChhHHHHhHHhhcccc----CCCchHHHHHHHHHhhcccCC----------CcHHHHHHHHHHHHhhc
Q 002083 339 RLIKTSPEIAEQHQLAVIDCL----EDPDDTLKRKTFELLYKMTKS----------SNVEVIVDRMIDYMISI 397 (969)
Q Consensus 339 ~I~~~~P~l~~~h~~~I~~cL----~D~D~sIR~kaLdLL~~L~n~----------~Nv~~IV~eLl~yl~~~ 397 (969)
+|+...-.-+..=...||..+ .++...|-+.+.+.+-.++++ +++...|+-|.+|....
T Consensus 1209 qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~ 1281 (1780)
T PLN03076 1209 QMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR 1281 (1780)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc
Confidence 999876555544445555555 366778888888887665433 46666667666676543
No 125
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.12 E-value=55 Score=40.17 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhh
Q 002083 326 SHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 326 d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~ 396 (969)
++.+|..++.+|.+++..+|..+.+....|+.=- +.|..||..|+.+|+. |+++ ..++..|..++..
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~-~e~~EvRiaA~~~lm~-t~P~--~~~l~~ia~~l~~ 559 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRKVQEVLLPIYLNR-AEPPEVRMAAVLVLME-TKPS--VALLQRIAELLNK 559 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCC-CCChHHHHHHHHHHHh-cCCC--HHHHHHHHHHHhh
Confidence 4679999999999999999998887766666322 3357899999988876 5554 4456666666654
No 126
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.89 E-value=56 Score=39.93 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhChhHHHHhHHhh-ccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHH
Q 002083 332 MGIDALGRLIKTSPEIAEQHQLAV-IDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRM 390 (969)
Q Consensus 332 vaL~~L~~I~~~~P~l~~~h~~~I-~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eL 390 (969)
+...+|..+.+..|+...+ ..| -....|+...+.-.+ ...+..|=++|+..+++++
T Consensus 287 v~v~aik~~F~~R~D~ls~--~eFPe~~w~d~T~E~tfL~-rt~~lyCldnNitell~~f 343 (885)
T COG5218 287 VLVAAIKGVFEKRPDVLSE--KEFPEYLWSDPTEENTFLS-RTELLYCLDNNITELLGRF 343 (885)
T ss_pred HHHHHHHHHHhhccccchh--hhcHHHHhhCchHHHHHHH-HHHHHHHHhccHHHHHhhc
Confidence 5556677777777777654 233 334556644332222 2223457788898888873
No 127
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=89.76 E-value=52 Score=40.59 Aligned_cols=133 Identities=17% Similarity=0.084 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHH-------HcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHh
Q 002083 123 NYLIVCAALNAV-------CKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKR 190 (969)
Q Consensus 123 N~~vralALr~L-------s~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~l 190 (969)
+...++.|+-++ ..+++.---..++..+.+++.++.-.|.+.+.-|+..+.-.+.+.-. ..++.+.++
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 445555555333 33444422345677788889999999999999999999988876543 468899999
Q ss_pred hcCCChhHHHHHHHHHHHhhhhCchhhHH--HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCCh
Q 002083 191 LCDNDPGVMGATLCPLFDLITVDVNSYKD--LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDK 266 (969)
Q Consensus 191 L~D~D~~Vv~aAl~~L~ei~~~~p~~~~~--Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~ 266 (969)
+.|.|+.+...++.+|.++.-.....++. +..-..+.+-.+++ =|++=.|-..+++|+.+..+..
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~n-----------d~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIN-----------DPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHh-----------CCCHHHHHHHHHHHHHhhcCcH
Confidence 99999999999999998876544332221 11112233333332 2567788999999999876543
No 128
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.69 E-value=37 Score=37.65 Aligned_cols=228 Identities=16% Similarity=0.200 Sum_probs=116.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhCCc------chhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHH
Q 002083 149 QVVELLGHSKEAVRRKAIMALHRFYQKSPS------SVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVI 222 (969)
Q Consensus 149 ~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe------~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~ 222 (969)
.+...|++.++.+|.||+.++..+...-|. .+.-+++-+.++|. |...+..++..+..+.+.. ..-...+
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~-~~~~~~~- 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMK-NFSPESA- 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCc-CCChhhH-
Confidence 356788999999999999999999887763 22346666777774 4444444466666665321 1111112
Q ss_pred HHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHH
Q 002083 223 SFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVS 302 (969)
Q Consensus 223 ~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~ 302 (969)
..+++.+..+ + ++ | .+. +......+++|..++.+- . ++++
T Consensus 79 --~~i~~~l~~~-----~------~~--q--------~~~---q~~R~~~~~ll~~l~~~~--------~---~~l~--- 118 (262)
T PF14500_consen 79 --VKILRSLFQN-----V------DV--Q--------SLP---QSTRYAVYQLLDSLLENH--------R---EALQ--- 118 (262)
T ss_pred --HHHHHHHHHh-----C------Ch--h--------hhh---HHHHHHHHHHHHHHHHHh--------H---HHHH---
Confidence 2222222210 0 00 0 000 111233455555554421 0 0110
Q ss_pred hcCCCHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhhChhHHHHhHH---hhcccc---------CCCchHHHHH
Q 002083 303 SIYANPKLIESAADVIARFLKS-DSHNLKYMGIDALGRLIKTSPEIAEQHQL---AVIDCL---------EDPDDTLKRK 369 (969)
Q Consensus 303 ~l~~~~~ll~~ai~~L~~fL~s-~d~NlrYvaL~~L~~I~~~~P~l~~~h~~---~I~~cL---------~D~D~sIR~k 369 (969)
.+-...+..+...+.. +||.--.++.+.+..+.+..+- .++.. +++.|. +|| .-|.+.
T Consensus 119 ------~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp-~~IT~e 189 (262)
T PF14500_consen 119 ------SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSCYFPITFRPPPNDP-YGITRE 189 (262)
T ss_pred ------hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhheeeeeeeCCCCCC-CCCCHH
Confidence 0111122233334433 5565555566666666655541 23333 334444 233 123333
Q ss_pred --HHHHhhccc-CCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCc-hHHHHHHHHH
Q 002083 370 --TFELLYKMT-KSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS-NHWFIQTMNK 430 (969)
Q Consensus 370 --aLdLL~~L~-n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~-~~W~Id~L~~ 430 (969)
+..|.-.|+ ++.=....+.-|++-+.. .....|.++...+..++++|.+. ...|+..+.+
T Consensus 190 dLk~~L~~cl~s~~~fa~~~~p~LleKL~s-~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 190 DLKRALRNCLSSTPLFAPFAFPLLLEKLDS-TSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred HHHHHHHHHhcCcHhhHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 333333344 454456777777777764 45568999999999999999753 2444444444
No 129
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.04 E-value=14 Score=41.82 Aligned_cols=175 Identities=18% Similarity=0.240 Sum_probs=87.5
Q ss_pred CCChhHHHHHHHHHHHhhhhCchhhHHHHH--------HHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC
Q 002083 193 DNDPGVMGATLCPLFDLITVDVNSYKDLVI--------SFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG 264 (969)
Q Consensus 193 D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~--------~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~ 264 (969)
..+..++...+.++.+++..++....-+.. .+-.+++ +.+ .++++.+.+..++|+.+...
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~-ll~-----------~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK-LLD-----------RNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH-H-S------------SSHHHHHHHHHHHHHHHTS
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH-Hhc-----------CCCHHHHHHHHHHHHHHHHc
Confidence 346666777777777777776642211111 1122222 222 25899999999999887544
Q ss_pred ChH-HHh---hhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHh------c-CCChh
Q 002083 265 DKQ-ASE---NMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIE-----SAADVIARFL------K-SDSHN 328 (969)
Q Consensus 265 d~~-~se---~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~-----~ai~~L~~fL------~-s~d~N 328 (969)
.+. ... +++..+.++++....+ ...-+.+-|+.++..+-..++++. ..+..|...+ . ..+..
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~--~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSS--SDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-H--HHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcC--CCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 322 222 3444444555532111 112345677777776665555543 3456677777 2 23467
Q ss_pred HHHHHHHHHHHHHhhChhHHHHh---H--HhhccccC-CCchHHHHHHHHHhhcccCCCc
Q 002083 329 LKYMGIDALGRLIKTSPEIAEQH---Q--LAVIDCLE-DPDDTLKRKTFELLYKMTKSSN 382 (969)
Q Consensus 329 lrYvaL~~L~~I~~~~P~l~~~h---~--~~I~~cL~-D~D~sIR~kaLdLL~~L~n~~N 382 (969)
+.|-++-++-.+.- +++.+... . ..+...++ ..-+-|-|.++-+|..+++...
T Consensus 214 l~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 214 LQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 88988888876553 33333221 1 11112222 2234566667777777776654
No 130
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=89.02 E-value=49 Score=38.86 Aligned_cols=64 Identities=14% Similarity=0.339 Sum_probs=45.2
Q ss_pred HHHHHHHhcC-CChhHHHHHHHHHHHHHhhChh---HHHHhH--HhhccccCCCchHHHHHHHHHhhccc
Q 002083 315 ADVIARFLKS-DSHNLKYMGIDALGRLIKTSPE---IAEQHQ--LAVIDCLEDPDDTLKRKTFELLYKMT 378 (969)
Q Consensus 315 i~~L~~fL~s-~d~NlrYvaL~~L~~I~~~~P~---l~~~h~--~~I~~cL~D~D~sIR~kaLdLL~~L~ 378 (969)
...|.++|.+ .||-+-.+|+.-|...++.+|. ++.++. ..|+.+++++|+.||-.||--+.++.
T Consensus 368 lkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 368 LKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 3456666655 4588888888888888888874 345544 46788888888888888877666543
No 131
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=88.92 E-value=68 Score=39.62 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHH-----HhH-HhhccccCCCchHHHHHHHHHhhcccCCCcHHHH
Q 002083 313 SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAE-----QHQ-LAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVI 386 (969)
Q Consensus 313 ~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~-----~h~-~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~I 386 (969)
..++.|..++.+.++|+|-..+..|..++-...+.++ +.- ..|....+|||..|...++.+|-.++... ...
T Consensus 461 ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~--~~s 538 (678)
T KOG1293|consen 461 NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS--RKS 538 (678)
T ss_pred CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc--HHH
Confidence 4788999999999999999999999998865543322 111 23445568999999999999999988762 333
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh
Q 002083 387 VDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFE 433 (969)
Q Consensus 387 V~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~ 433 (969)
|+-+++-.. +++.+|...- |+++.....++.+...+.
T Consensus 539 vdfll~~~~---------~~ld~i~l~l-k~a~~~pi~ie~~~~~~~ 575 (678)
T KOG1293|consen 539 VDFLLEKFK---------DVLDKIDLQL-KIAIGSPILIEFLAKKMR 575 (678)
T ss_pred HHHHHHhhh---------HHHHHHHHHH-hhccCCceehhhHHHHHH
Confidence 333332221 1233333222 666666555555555443
No 132
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.90 E-value=6 Score=40.62 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=77.4
Q ss_pred HHHHHHHhhhcCccHHHHHHHHHHHHcccc---cchH-h---hHHHHHHHhcCC-CChHHHHHHHHHHHHHHhh---CCc
Q 002083 110 LIVNTIQKDLKSDNYLIVCAALNAVCKLIN---EETI-P---AVLPQVVELLGH-SKEAVRRKAIMALHRFYQK---SPS 178 (969)
Q Consensus 110 L~iNtLqKDL~s~N~~vralALr~Ls~I~~---~el~-~---~l~~~V~~lL~d-~~pyVRKkA~lal~kiy~~---~Pe 178 (969)
-.+..+.+=|+++++..|-.++..+.-++. .+.. + ..+..+.+.|.. ..+.+++.|+.++.++|.. +|+
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344456666777777777766666544332 2333 2 334445555554 4567899999999999874 577
Q ss_pred chhh--------HHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHH
Q 002083 179 SVQH--------LVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQV 231 (969)
Q Consensus 179 ~v~~--------l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l 231 (969)
..++ ++..+..++.+ ..+...++.+|..+++.+|..|+++..++-.++..+
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 6543 33333344443 667777888899999999998888877766665543
No 133
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=88.07 E-value=12 Score=42.55 Aligned_cols=293 Identities=15% Similarity=0.239 Sum_probs=147.0
Q ss_pred hHHHHHHhhcCCCcchh-HHHHHHHHhhhccCch---HHH--HHHHHHHhhh-cCcc---HHHHHHHHHHHHcccccc--
Q 002083 74 GYIHAVKMTHDDNLVLK-RTGYLAVTLFLNEDHD---LII--LIVNTIQKDL-KSDN---YLIVCAALNAVCKLINEE-- 141 (969)
Q Consensus 74 ~~~~vIkl~sS~~~~~K-RlgYLals~~~~~~~d---lll--L~iNtLqKDL-~s~N---~~vralALr~Ls~I~~~e-- 141 (969)
-+++..+-+-|+|++.. .-.|=|=..+..+++- ..+ =++-.|..-+ .+.+ .+..+-||+.+++=-+..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 35677776777777644 3445555555544331 111 1112222222 1222 356677887776522111
Q ss_pred -hH-hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHH
Q 002083 142 -TI-PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKD 219 (969)
Q Consensus 142 -l~-~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~ 219 (969)
.+ ....|...++|.+++.-||--|+-||..+.--.+..-... ....|+-.++.++..+... ..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~v--------------L~~galeplL~ll~ss~~~-is 216 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV--------------LQCGALEPLLGLLLSSAIH-IS 216 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHH--------------HhcCchHHHHHHHHhccch-HH
Confidence 11 1245777899999999999999999998876555432211 1111222222332222110 11
Q ss_pred HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHH
Q 002083 220 LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECIC 299 (969)
Q Consensus 220 Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik 299 (969)
++....-.|..+..++-|+ -.|.-+ ...+++|.+++...| .-|+..|.=
T Consensus 217 mlRn~TWtLSNlcRGknP~--------P~w~~i-----------------sqalpiL~KLiys~D------~evlvDA~W 265 (526)
T COG5064 217 MLRNATWTLSNLCRGKNPP--------PDWSNI-----------------SQALPILAKLIYSRD------PEVLVDACW 265 (526)
T ss_pred HHHHhHHHHHHhhCCCCCC--------CchHHH-----------------HHHHHHHHHHHhhcC------HHHHHHHHH
Confidence 2222233333333333332 123322 122334444443322 124444444
Q ss_pred HHHhcCCCH-HHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC---hhHHH--HhHHhhccccCCCchHHHH
Q 002083 300 CVSSIYANP-KLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTS---PEIAE--QHQLAVIDCLEDPDDTLKR 368 (969)
Q Consensus 300 ~I~~l~~~~-~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~---P~l~~--~h~~~I~~cL~D~D~sIR~ 368 (969)
.|.++...+ +-+. .+...|..+|.+.+.+++--+|+.+..|+.-+ ..++. -....|-.+|.+|-.-||+
T Consensus 266 AiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 266 AISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred HHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence 444443211 1111 13345778888888899888999888887432 11211 1223444457888779999
Q ss_pred HHHHHhhcccCCCcHHHH---H-----HHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002083 369 KTFELLYKMTKSSNVEVI---V-----DRMIDYMISINDNHYKTEIASRCVELA 414 (969)
Q Consensus 369 kaLdLL~~L~n~~Nv~~I---V-----~eLl~yl~~~~D~~~k~eli~~I~~la 414 (969)
.+-=.+..++-. |.+.| + .-|++-+. +.|...|+|++=+|..+.
T Consensus 346 EaCWTiSNITAG-nteqiqavid~nliPpLi~lls-~ae~k~kKEACWAisNat 397 (526)
T COG5064 346 EACWTISNITAG-NTEQIQAVIDANLIPPLIHLLS-SAEYKIKKEACWAISNAT 397 (526)
T ss_pred hhheeecccccC-CHHHHHHHHhcccchHHHHHHH-HHHHHHHHHHHHHHHhhh
Confidence 988777776543 44432 2 22333332 345566777777776554
No 134
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=87.99 E-value=66 Score=38.32 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=15.5
Q ss_pred HhhccccCCCchHHHHHHHHHhhcc
Q 002083 353 LAVIDCLEDPDDTLKRKTFELLYKM 377 (969)
Q Consensus 353 ~~I~~cL~D~D~sIR~kaLdLL~~L 377 (969)
..|+.++.++|+.||..||--+-+|
T Consensus 399 ~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 399 QRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3466666666667776666655444
No 135
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.92 E-value=74 Score=40.97 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH---hhChhHH----HHhHHhhccccCCCchHHHHHHHHHhhccc
Q 002083 310 LIESAADVIARFLKSDSHNLKYMGIDALGRLI---KTSPEIA----EQHQLAVIDCLEDPDDTLKRKTFELLYKMT 378 (969)
Q Consensus 310 ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~---~~~P~l~----~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~ 378 (969)
++....+.-..||++.+--+|--+|+.|.... +.+++.+ .+...-++.|+.+.|+.+-.+|++.|..|+
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMG 875 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 34445555567888777778888877776532 3445443 233456777888888888888887776554
No 136
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=87.62 E-value=20 Score=45.10 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=74.9
Q ss_pred HHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHh-hcCCChhHHHHH
Q 002083 129 AALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKR-LCDNDPGVMGAT 202 (969)
Q Consensus 129 lALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~l-L~D~D~~Vv~aA 202 (969)
.|+..|+++..|- -..++..|-..+.. +--|..|+.-+..+.+..|..+. .++..|.++ ..|.+..|+.+|
T Consensus 55 ~~~~il~~~~~P~-~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~a 131 (668)
T PF04388_consen 55 RALEILVGVQEPH-DKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSA 131 (668)
T ss_pred HHHHHHHhcCCcc-HHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHH
Confidence 4667778887772 12344555555554 45788899999999999988765 356555554 479999999999
Q ss_pred HHHHHHhhhhCchhhHHHHHHHHHHHHHHHh
Q 002083 203 LCPLFDLITVDVNSYKDLVISFVSILKQVAE 233 (969)
Q Consensus 203 l~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~ 233 (969)
+.+|.-+++.-|....+..|.|+.|.-.++.
T Consensus 132 l~~LimlLP~ip~~l~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 132 LLVLIMLLPHIPSSLGPHLPDLFNIFGRLLS 162 (668)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHHHH
Confidence 9999999988887777777778887776653
No 137
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=87.33 E-value=58 Score=36.99 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHhhChh-----HHHHhHHhhccccCCCchHHHHH---HHHHhhcccC
Q 002083 327 HNLKYMGIDALGRLIKTSPE-----IAEQHQLAVIDCLEDPDDTLKRK---TFELLYKMTK 379 (969)
Q Consensus 327 ~NlrYvaL~~L~~I~~~~P~-----l~~~h~~~I~~cL~D~D~sIR~k---aLdLL~~L~n 379 (969)
+.+.-.+|..-..|+..-|. ....+...+..+|+.+|..+|.- +|-+||.+..
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 45888899988888866554 34557778999999999999887 5556666555
No 138
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=87.28 E-value=5.2 Score=41.96 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=73.3
Q ss_pred hhCCcchh--hHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-CchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhH
Q 002083 174 QKSPSSVQ--HLVSNFRKRLCDNDPGVMGATLCPLFDLITV-DVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFI 250 (969)
Q Consensus 174 ~~~Pe~v~--~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~-~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWl 250 (969)
+.+|+.++ ++++.|-+-|++.+.--..-|...+.+++.. .++...+++|.++--|++.++. .+|=.
T Consensus 28 ~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t-----------r~~~V 96 (183)
T PF10274_consen 28 KVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT-----------RDPEV 96 (183)
T ss_pred ecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC-----------CCHHH
Confidence 45566654 6888888888775444344456667788877 6677888999999999887653 47778
Q ss_pred HHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccC----CCCCCCchHHH
Q 002083 251 QIRLLKILALLGSGDKQASENMYTVVGDIFRKCD----SSSNIGNAVLY 295 (969)
Q Consensus 251 QikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~----~~~Ni~~AVly 295 (969)
-+..|++|+.+....+..-+.+.+.+.++|.... ...|.|..+-|
T Consensus 97 ~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y 145 (183)
T PF10274_consen 97 FCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDY 145 (183)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCccccc
Confidence 8899999998854444444445444444333211 24566766666
No 139
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=87.15 E-value=8.8 Score=39.83 Aligned_cols=68 Identities=25% Similarity=0.193 Sum_probs=56.8
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchh
Q 002083 148 PQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNS 216 (969)
Q Consensus 148 ~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~ 216 (969)
+.+.+-..+.++++|+.|+.++.+.+.. ......+++.+..++.|.+..|.-+.-.+|.++.+.+|+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~ 175 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPER 175 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 5678888999999999999999999987 2335567788888889999999988888888888877754
No 140
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=86.99 E-value=43 Score=45.63 Aligned_cols=161 Identities=15% Similarity=0.217 Sum_probs=93.9
Q ss_pred HHHHHHHHHH-cCCCCcchHHHHHHhhcC-CCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHH--HHHHHHH
Q 002083 57 YIIRLVYVEM-LGHDASFGYIHAVKMTHD-DNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYL--IVCAALN 132 (969)
Q Consensus 57 ~l~KLiyl~m-lG~Dvsf~~~~vIkl~sS-~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~--vralALr 132 (969)
.++..|+.-| .--++.-+++.+|+-+.+ .++. -+=.+.+-++...+.+--.-+.+.|+|=..+.... ....+.+
T Consensus 346 lil~~lks~lr~~k~l~eawiK~I~~~~~~~~hk--v~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~ 423 (1426)
T PF14631_consen 346 LILDVLKSGLRFSKDLSEAWIKAIESLEDASDHK--VIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQTFK 423 (1426)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT----THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhcCCCccccc--hHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHHHHh
Confidence 4444455443 233455567777765543 3443 33333333332222222233455666666654221 1112222
Q ss_pred HHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch-hhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002083 133 AVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV-QHLVSNFRKRLCDNDPGVMGATLCPLFDLIT 211 (969)
Q Consensus 133 ~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v-~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~ 211 (969)
.= .....+..+.++.....+|.++.+.||.-+......+|....+.. ++.+..|...+++.+..-+.+|+.+|++++.
T Consensus 424 ~~-~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~ 502 (1426)
T PF14631_consen 424 GH-SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAE 502 (1426)
T ss_dssp HH-HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 21 234577778888888888999999999999999999998875533 3577777777777777777899999999998
Q ss_pred hCchhhHHH
Q 002083 212 VDVNSYKDL 220 (969)
Q Consensus 212 ~~p~~~~~L 220 (969)
.+++...+.
T Consensus 503 ~~~~~l~~f 511 (1426)
T PF14631_consen 503 KNPSELQPF 511 (1426)
T ss_dssp H-HHHHHHT
T ss_pred ccHHHHHHH
Confidence 877654433
No 141
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.91 E-value=85 Score=38.45 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC----hhHHHHhHHhhccccCCCchHHHHHHHHHhhcc----cC
Q 002083 308 PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS----PEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKM----TK 379 (969)
Q Consensus 308 ~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~----P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L----~n 379 (969)
.+++......+.+++.+++-++||-.|+.|..++..- -.++.-....+...+-|....+|+.|+-.|+.. .|
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3466677778888999999999999999999988543 344554555666677788889999999888865 34
Q ss_pred CCcHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 002083 380 SSNVEVIVDRMIDYMISINDNHYKTEIASR 409 (969)
Q Consensus 380 ~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~ 409 (969)
++|. |++-|..-++.-...+.|+-+..-
T Consensus 166 een~--~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 166 EENR--IVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred hHHH--HHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4442 444333334321112455544433
No 142
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.86 E-value=10 Score=38.94 Aligned_cols=136 Identities=16% Similarity=0.177 Sum_probs=72.2
Q ss_pred cchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhC-chhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHH
Q 002083 178 SSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVD-VNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLK 256 (969)
Q Consensus 178 e~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~-p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLk 256 (969)
..+.+|..++..+|.++++.-...+++++..++..+ ++.+.... .+|++. +++
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-------------------------~~W~~~-Ll~ 74 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHG-------------------------SQWLRA-LLS 74 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHH-------------------------HHHHHH-HHH
Confidence 356678899999999988888888888887777654 33322211 345533 333
Q ss_pred HHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 002083 257 ILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDA 336 (969)
Q Consensus 257 lL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~ 336 (969)
+|.. +..+...+.....|..++...... ..+..|.. .|. +...+..+..++.. ....-.+|+.
T Consensus 75 ~L~~--~~~~~~~~~ai~~L~~l~~~~~~~----p~l~Rei~--------tp~-l~~~i~~ll~l~~~--~~~~~~~l~~ 137 (165)
T PF08167_consen 75 ILEK--PDPPSVLEAAIITLTRLFDLIRGK----PTLTREIA--------TPN-LPKFIQSLLQLLQD--SSCPETALDA 137 (165)
T ss_pred HHcC--CCCHHHHHHHHHHHHHHHHHhcCC----CchHHHHh--------hcc-HHHHHHHHHHHHhc--cccHHHHHHH
Confidence 3333 111111122222233332221100 01111111 011 11233444444442 4667789999
Q ss_pred HHHHHhhChhHHHHhHHhhc
Q 002083 337 LGRLIKTSPEIAEQHQLAVI 356 (969)
Q Consensus 337 L~~I~~~~P~l~~~h~~~I~ 356 (969)
|..++..||..|.+|...|-
T Consensus 138 L~~ll~~~ptt~rp~~~ki~ 157 (165)
T PF08167_consen 138 LATLLPHHPTTFRPFANKIE 157 (165)
T ss_pred HHHHHHHCCccccchHHHHH
Confidence 99999999999988876554
No 143
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=86.78 E-value=87 Score=40.38 Aligned_cols=72 Identities=15% Similarity=0.299 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHH---HHhHHhhccccCCCchHHHHHHHHHhhcccCC
Q 002083 309 KLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIA---EQHQLAVIDCLEDPDDTLKRKTFELLYKMTKS 380 (969)
Q Consensus 309 ~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~---~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~ 380 (969)
.+.+-..-.|..+|++.-.-+|--+++.|..+....|.+| +.+...++..++|.+..+-.+|+.+|.++..+
T Consensus 612 ~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p 686 (1529)
T KOG0413|consen 612 SKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP 686 (1529)
T ss_pred hcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 3344445667778888778899999999999999999888 34555677778898888999999988777665
No 144
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.68 E-value=25 Score=40.23 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=123.2
Q ss_pred hhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc---cchHhhHHH-------HHHHhcCCCC
Q 002083 89 LKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN---EETIPAVLP-------QVVELLGHSK 158 (969)
Q Consensus 89 ~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~---~el~~~l~~-------~V~~lL~d~~ 158 (969)
.+..|--.+..++++. ...|.+-|++..+.+...|||-|..|.. ..++..++. .+.+++....
T Consensus 42 ~~~~g~~l~~~iL~~~-------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~ 114 (330)
T PF11707_consen 42 FQSYGLELIRSILQNH-------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRK 114 (330)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhcccc
Confidence 5555555555555542 4466777888888778899999888766 345555443 3444543221
Q ss_pred -------------hHHHHHHHHHHHHHHhhCCcchh-h------HHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH
Q 002083 159 -------------EAVRRKAIMALHRFYQKSPSSVQ-H------LVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK 218 (969)
Q Consensus 159 -------------pyVRKkA~lal~kiy~~~Pe~v~-~------l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~ 218 (969)
+-||..++.-++.+....+..+. + ++..+-+-|.++++.++.-.+..|.+-+-.++.. .
T Consensus 115 ~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v-~ 193 (330)
T PF11707_consen 115 KEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSV-S 193 (330)
T ss_pred ccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCC-C
Confidence 38899998888888876654332 2 2333334445555566666666655433333211 0
Q ss_pred HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCCh----HHHhhhHHHHHHhHhccCCCCCCCchHH
Q 002083 219 DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDK----QASENMYTVVGDIFRKCDSSSNIGNAVL 294 (969)
Q Consensus 219 ~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~----~~se~l~~iL~~iL~~~~~~~Ni~~AVl 294 (969)
...|. .+-++|. |-++...|...++ ...+...++|..+.... ++.|.
T Consensus 194 -------r~~K~-------------~~fn~~~---L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p------~~Gv~ 244 (330)
T PF11707_consen 194 -------RSTKC-------------KLFNEWT---LSQLASLYSRDGEDEKSSVADLVHEFLLALCTDP------KHGVC 244 (330)
T ss_pred -------hhhhh-------------hhcCHHH---HHHHHHHhcccCCcccchHHHHHHHHHHHHhcCC------Ccccc
Confidence 01110 1235565 4444455555554 34455555555544421 23454
Q ss_pred HHHHHHHHh-------cCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccC-CC
Q 002083 295 YECICCVSS-------IYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLE-DP 362 (969)
Q Consensus 295 yEaik~I~~-------l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~-D~ 362 (969)
|.--..... ...+..-....-..|..||..-.|.---.-.+.+.+|....|+++..|...+-..+. ||
T Consensus 245 f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~Lvl~Il~~~PeLva~Y~~~~~~~~~~dP 320 (330)
T PF11707_consen 245 FPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDRQQELVLKILKACPELVAPYFNNLPYSLEHDP 320 (330)
T ss_pred cCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHHHHHHHHHHHHHChHHHHHHHHhhhhhCCCCC
Confidence 432211000 000000000011233444443333333445667888999999999999887744444 44
No 145
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=86.47 E-value=20 Score=41.59 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhh
Q 002083 333 GIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 333 aL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~ 396 (969)
+-+.|-+..+..|++...-...-++|.+|.|..||+.|+.=|-..|..++...|.++|...|..
T Consensus 44 asq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk 107 (460)
T KOG2213|consen 44 ASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNK 107 (460)
T ss_pred HHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHH
Confidence 3344444445678887777778899999999999999999999999999999999988777753
No 146
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.42 E-value=38 Score=41.80 Aligned_cols=67 Identities=21% Similarity=0.366 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhh
Q 002083 326 SHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 326 d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~ 396 (969)
+..+|..|+.+|.+++..+|+.+.+-...|+.=-.+ |..||..|+.+|+. |++. ..++..|..++..
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e-~~EvRiaA~~~lm~-~~P~--~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTE-DPEVRIAAYLILMR-CNPS--PSVLQRIAQSLWN 603 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS--HHHHHHHHHHHHH-T-----HHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHh-cCCC--HHHHHHHHHHHhh
Confidence 356667777777777667776665554444432222 35688888777665 5554 4566666666643
No 147
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.98 E-value=14 Score=36.84 Aligned_cols=106 Identities=18% Similarity=0.230 Sum_probs=74.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHH
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISF 224 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~l 224 (969)
...|.++..+..+---..+++-+.-+.+..++...+.+..|++.|...+|.|+..||.+|-.+.++-+..|+..+ ..|
T Consensus 7 ~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~f 86 (140)
T PF00790_consen 7 TELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEF 86 (140)
T ss_dssp HHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred HHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHH
Confidence 344555555554444667778888888888887788889999999999999999999887655555556666554 567
Q ss_pred HHHHHHHHhccCCCCcCCCCCCChh--HHHHHHHHHHHh
Q 002083 225 VSILKQVAERRLPKSYDYHQMPAPF--IQIRLLKILALL 261 (969)
Q Consensus 225 v~iLk~l~~~~lp~~y~y~~v~~PW--lQikLLklL~~l 261 (969)
++.|..++.... ..++ .+-+++.++..+
T Consensus 87 l~~l~~l~~~~~---------~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 87 LDELVKLIKSKK---------TDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHHTT---------THHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC---------CCchhHHHHHHHHHHHHH
Confidence 777777665321 2445 788888888654
No 148
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.71 E-value=1.1e+02 Score=39.48 Aligned_cols=237 Identities=16% Similarity=0.163 Sum_probs=122.0
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc-chh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhh--hCc
Q 002083 143 IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPS-SVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLIT--VDV 214 (969)
Q Consensus 143 ~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe-~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~--~~p 214 (969)
+-.+...+...|.+.+|.+|+||+.++-...-..|. .+. .++......|.| ...+..+++..+..++. .=|
T Consensus 41 l~dlV~sl~~yl~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~rldd-~~la~~~~l~~l~aL~~~~~~p 119 (1030)
T KOG1967|consen 41 LLDLVTSLGTYLTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNRLDD-SALAKEAVLGGLKALILMSKLP 119 (1030)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhHHHH-hhhhHHHHHHHHHHHHHhhcCC
Confidence 445667778888888999999999988888877775 332 355555555654 33333344443322221 111
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHH
Q 002083 215 NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVL 294 (969)
Q Consensus 215 ~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVl 294 (969)
. ...+.++|.+... ++ + --|.|. +....|++|+.+++.-
T Consensus 120 ~------~~ivsllkalfq~-----~~---v-qs~aq~---------------~R~~~~~Il~~~l~~~----------- 158 (1030)
T KOG1967|consen 120 D------NFIVSLLKALFQE-----VQ---V-QSLAQK---------------ERLLQYEILEWFLDYR----------- 158 (1030)
T ss_pred c------hHHHHHHHHHHHh-----cc---h-HHHHHH---------------HHhhHHHHHHHHHHHH-----------
Confidence 1 1123444433211 00 0 113221 1123355566555521
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh-Ch-hHHHHhHHhhccccC--------CCc
Q 002083 295 YECICCVSSIYANPKLIESAADVIARFLK-SDSHNLKYMGIDALGRLIKT-SP-EIAEQHQLAVIDCLE--------DPD 363 (969)
Q Consensus 295 yEaik~I~~l~~~~~ll~~ai~~L~~fL~-s~d~NlrYvaL~~L~~I~~~-~P-~l~~~h~~~I~~cL~--------D~D 363 (969)
+|.++.. -++++ +.....-+. .+||---.++...+..|... .| .-|.+..-+++.|.- |+.
T Consensus 159 ~~~l~s~-----~~D~~---~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI~Fkppk~D~ 230 (1030)
T KOG1967|consen 159 LEFLKSL-----GPDFL---FTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPITFKPPKDDT 230 (1030)
T ss_pred HHHHhcc-----cchHH---HHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeeeeccCCCCCc
Confidence 1222211 01111 121112222 24555455556666666652 22 234455556777762 333
Q ss_pred hHHHHHHHH--Hhhcc-cCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCC-chHHHHHHHHH
Q 002083 364 DTLKRKTFE--LLYKM-TKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAP-SNHWFIQTMNK 430 (969)
Q Consensus 364 ~sIR~kaLd--LL~~L-~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap-~~~W~Id~L~~ 430 (969)
..|||.=|. +...+ +++.=.+..+.-|++-+.. ++...|.+......++|.+|.- ...|.-.-+..
T Consensus 231 ~~I~reDL~~sLr~al~stP~Fa~~~lp~LlEKL~a-s~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWs 300 (1030)
T KOG1967|consen 231 ITIRREDLKASLRSALVSTPSFAPFALPLLLEKLNA-SDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWS 300 (1030)
T ss_pred ccccHHHHHHHHHHHHhcCccchhhHHHHHHHHhcc-ccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHH
Confidence 567876333 33333 4666667777777777764 5667788888888899988863 33455444443
No 149
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.51 E-value=29 Score=42.97 Aligned_cols=192 Identities=17% Similarity=0.227 Sum_probs=111.4
Q ss_pred ccchHh-hHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-CCcc--------hhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002083 139 NEETIP-AVLPQVVELLGHSKEAVRRKAIMALHRFYQK-SPSS--------VQHLVSNFRKRLCDNDPGVMGATLCPLFD 208 (969)
Q Consensus 139 ~~el~~-~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~-~Pe~--------v~~l~~~l~~lL~D~D~~Vv~aAl~~L~e 208 (969)
.++|+- -.-|.+-+.|.-.+..||..|++-+..+|-. +|+. ++.-+..+.++|.|.=|+|.+.|+--++.
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k 246 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCK 246 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 344443 3445778889999999999999999999974 5765 22335677888999999998877654443
Q ss_pred hhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCC
Q 002083 209 LITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSN 288 (969)
Q Consensus 209 i~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~N 288 (969)
+... |..++ | |=. +.++|+. +...+-. |+
T Consensus 247 ~~s~-----------fWe~i--------P----------~~i---~~~ll~k--------------I~d~~a~--dt--- 275 (1005)
T KOG1949|consen 247 ITSK-----------FWEMI--------P----------PTI---LIDLLKK--------------ITDELAF--DT--- 275 (1005)
T ss_pred HHHH-----------HHHHc--------C----------HHH---HHHHHHH--------------HHHHhhh--cc---
Confidence 3211 11111 0 111 1111111 1111111 11
Q ss_pred CCchHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh-hHHHH-hHHhhccccCCCc
Q 002083 289 IGNAVLYECICCVSSIYA---NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP-EIAEQ-HQLAVIDCLEDPD 363 (969)
Q Consensus 289 i~~AVlyEaik~I~~l~~---~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P-~l~~~-h~~~I~~cL~D~D 363 (969)
...|.....+++..+.. ...+++.....|.-.|.++..-+|....+.|.+|-...- +++.- -..+++..|+.+.
T Consensus 276 -~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~ 354 (1005)
T KOG1949|consen 276 -SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS 354 (1005)
T ss_pred -chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc
Confidence 12455555555544433 345677777777778887778899998898888765421 11110 1234555565555
Q ss_pred hHHHHHHHHHhhcccCCCc
Q 002083 364 DTLKRKTFELLYKMTKSSN 382 (969)
Q Consensus 364 ~sIR~kaLdLL~~L~n~~N 382 (969)
..+.|+-+.+|+..+=+.|
T Consensus 355 ~~v~rr~~~li~~s~lP~~ 373 (1005)
T KOG1949|consen 355 RPVSRRLVSLIFNSFLPVN 373 (1005)
T ss_pred cHHHHHHHHHHHHhhcCCC
Confidence 6666666677766655544
No 150
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=85.50 E-value=72 Score=36.27 Aligned_cols=185 Identities=21% Similarity=0.335 Sum_probs=104.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhC--Ccchh----hHHHHHHHhhcCCCh--hHHHHHHHHHHHhh----hhCc
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKS--PSSVQ----HLVSNFRKRLCDNDP--GVMGATLCPLFDLI----TVDV 214 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~--Pe~v~----~l~~~l~~lL~D~D~--~Vv~aAl~~L~ei~----~~~p 214 (969)
+...+..+.+++.-.|-.|+-++.+++... ++.+. .+++.+.+.++-... .+.++.+..|+-+- ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 456667778899999999999999999765 44443 345556666643332 23332222222222 1122
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHH---HHHHHHHHHhCCCChHHHhhhHHHHHHhHh----ccCCCC
Q 002083 215 NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQ---IRLLKILALLGSGDKQASENMYTVVGDIFR----KCDSSS 287 (969)
Q Consensus 215 ~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQ---ikLLklL~~l~~~d~~~se~l~~iL~~iL~----~~~~~~ 287 (969)
..|..+.|.|..++..- -..+=.. +..|-++..++-.+....+..++.+..+.. ..+...
T Consensus 125 ei~~~~~~~L~~~l~d~-------------s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~ 191 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDS-------------SASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNA 191 (309)
T ss_pred HHHHHHHHHHHHHHhCC-------------ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 34555555555544321 0122222 235566667777776666644454443222 122111
Q ss_pred -CC----CchHHHHHHHHH---HhcCCC---HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC
Q 002083 288 -NI----GNAVLYECICCV---SSIYAN---PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS 344 (969)
Q Consensus 288 -Ni----~~AVlyEaik~I---~~l~~~---~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~ 344 (969)
++ ..+|+-.|+..- +...+. ....+.++..|..+|.+.+.++|..+=.+|..|....
T Consensus 192 ~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 192 PVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred ccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 11 135666666643 333333 2345567888999999999999999999998776543
No 151
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.12 E-value=11 Score=43.91 Aligned_cols=155 Identities=12% Similarity=0.204 Sum_probs=88.2
Q ss_pred hHHHHHHHH---hccCChHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHH--cCCCCcchHHHHHH-hhc--
Q 002083 12 EFLDLVKSI---GEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEM--LGHDASFGYIHAVK-MTH-- 83 (969)
Q Consensus 12 ~l~dlIk~I---r~~ks~~eE~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~m--lG~Dvsf~~~~vIk-l~s-- 83 (969)
.+..+|..| --|=+.++|+-+=..=..-||+.+...+... +|.+-.-++.-.+ .+..+...+...|+ +++
T Consensus 184 ~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~T--rR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y 261 (370)
T PF08506_consen 184 HLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDT--RRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQY 261 (370)
T ss_dssp HHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCC--cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456677765 2233334445444444556898887655433 3344444444333 23333333333332 332
Q ss_pred ----CCCcchhHHHHHHHHh--hhccC------------chHHHHHHHHHHhhhc---CccHHHHHHHHHHHHcc---cc
Q 002083 84 ----DDNLVLKRTGYLAVTL--FLNED------------HDLIILIVNTIQKDLK---SDNYLIVCAALNAVCKL---IN 139 (969)
Q Consensus 84 ----S~~~~~KRlgYLals~--~~~~~------------~dlllL~iNtLqKDL~---s~N~~vralALr~Ls~I---~~ 139 (969)
+.+.. +|=|.+++.. ..... -++.-...+.+.-||+ +..|+.++-|++++... .+
T Consensus 262 ~~~~~~~w~-~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~ 340 (370)
T PF08506_consen 262 ASNPSNNWR-SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP 340 (370)
T ss_dssp HH-TTT-HH-HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-
T ss_pred hhCCcccHH-HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC
Confidence 34444 4444444432 22221 1455667778888888 67899999999999854 45
Q ss_pred cchHhhHHHHHHHhcCCCChHHHHHHHHHH
Q 002083 140 EETIPAVLPQVVELLGHSKEAVRRKAIMAL 169 (969)
Q Consensus 140 ~el~~~l~~~V~~lL~d~~pyVRKkA~lal 169 (969)
++....++|.+.++|.+++..|+--|+.|+
T Consensus 341 ~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 777888999999999999999999999885
No 152
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.73 E-value=48 Score=42.07 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=47.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhC-Ccch---hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKS-PSSV---QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~-Pe~v---~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
+......+.|+-+.+|-.|++-+.++++.. +..+ +.++..+.+.|.|.|+.|-.+|+..+..+|...|
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc
Confidence 445555667788889999999999999832 3222 2467778888999999998888875444443344
No 153
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.55 E-value=1.3e+02 Score=38.45 Aligned_cols=178 Identities=19% Similarity=0.259 Sum_probs=108.1
Q ss_pred HHHHhhhcCc-cHHHHHHHHHHHHcc---cccc-----hHhhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhCCcchh-
Q 002083 113 NTIQKDLKSD-NYLIVCAALNAVCKL---INEE-----TIPAVLPQVVELLGHS-KEAVRRKAIMALHRFYQKSPSSVQ- 181 (969)
Q Consensus 113 NtLqKDL~s~-N~~vralALr~Ls~I---~~~e-----l~~~l~~~V~~lL~d~-~pyVRKkA~lal~kiy~~~Pe~v~- 181 (969)
+.|..-|+.. +|...--||.-||.+ .+++ .+..+.|.+..+|+|. ++-+---|+-||+.++...|..+.
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 4444455544 888888899988853 3444 3678899999999985 678999999999999999998653
Q ss_pred ----hHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhCchhhHH-----HHHHHHHHHHHHHhccCCCCcCCCCCCChhHH
Q 002083 182 ----HLVSNFRKRLCD-NDPGVMGATLCPLFDLITVDVNSYKD-----LVISFVSILKQVAERRLPKSYDYHQMPAPFIQ 251 (969)
Q Consensus 182 ----~l~~~l~~lL~D-~D~~Vv~aAl~~L~ei~~~~p~~~~~-----Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQ 251 (969)
+.++.|...|.- .=..|.-.+|.+|--|.+.++..+.+ .+-.|++++.- -.|
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi------------------~aQ 311 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSI------------------HAQ 311 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHH------------------HHH
Confidence 356666554422 12235556777776666777754321 12233333321 345
Q ss_pred HHHHHHHHHhCCC----ChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHH---HHhcCCCHHHHHH
Q 002083 252 IRLLKILALLGSG----DKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICC---VSSIYANPKLIES 313 (969)
Q Consensus 252 ikLLklL~~l~~~----d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~---I~~l~~~~~ll~~ 313 (969)
-+.|-+....|.. +....-+-.++|..+|+..|. ..|.+-|+.. +-...+.++.+++
T Consensus 312 R~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~-----k~ies~~ic~~ri~d~f~h~~~kLdq 375 (1051)
T KOG0168|consen 312 RVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDK-----KPIESVCICLTRIADGFQHGPDKLDQ 375 (1051)
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccc-----hhHHHHHHHHHHHHHhcccChHHHHH
Confidence 5666666665542 222233345678888886653 2455555532 2223345555443
No 154
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=84.16 E-value=61 Score=36.94 Aligned_cols=66 Identities=20% Similarity=0.367 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCChh-HHHHHHHHHHHHHhhChhHH---HHhH--HhhccccCCCchHHHHHHHHHhhcccC
Q 002083 314 AADVIARFLKSDSHN-LKYMGIDALGRLIKTSPEIA---EQHQ--LAVIDCLEDPDDTLKRKTFELLYKMTK 379 (969)
Q Consensus 314 ai~~L~~fL~s~d~N-lrYvaL~~L~~I~~~~P~l~---~~h~--~~I~~cL~D~D~sIR~kaLdLL~~L~n 379 (969)
.+..|..++.++.+| .-.+|+.-|.++++..|+.. .++. ..|+++++++|+.||-.||..+..+..
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 566788889998888 77889999999999999764 3443 469999999999999999988776543
No 155
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=83.90 E-value=6.1 Score=46.60 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=77.3
Q ss_pred CCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccch---------------------
Q 002083 84 DDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEET--------------------- 142 (969)
Q Consensus 84 S~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el--------------------- 142 (969)
..+-..||.-|=|++.++...+++-. -..+.--|+|+|+--|++||..++.|....-
T Consensus 23 ~~~~~~~~~~ygyw~~~~pd~~~~g~--p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~ 100 (728)
T KOG4535|consen 23 TIKSIEKKVLYGYWSAFIPDTPELGS--PSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMI 100 (728)
T ss_pred HHhhhhhhhhhceeeeecCCCCCCCC--ceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHH
Confidence 34556899999999999987655210 0111124899999999999999887632110
Q ss_pred ---HhhHHHHHHHhc-CCCChHHHHHHHHHHHHHHhhCC-c-----chhhHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 143 ---IPAVLPQVVELL-GHSKEAVRRKAIMALHRFYQKSP-S-----SVQHLVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 143 ---~~~l~~~V~~lL-~d~~pyVRKkA~lal~kiy~~~P-e-----~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
+..+...+.-.| ....+-|--..+-|+..+.+..| + .+.+++..++.++..+|+.|..+++.++-.+.
T Consensus 101 a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 101 ACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 011111122222 23444444445556666665555 1 23467888889999999999988887765544
No 156
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.40 E-value=4 Score=50.25 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHh-hhcCccHHHHHHHHHHH
Q 002083 56 EYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQK-DLKSDNYLIVCAALNAV 134 (969)
Q Consensus 56 e~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqK-DL~s~N~~vralALr~L 134 (969)
+.+.-=|.|.|+|..= -+-.-|-+++.++|..+|+-|-+.+.+-..-.... =+|-.+.. -.+|.|.-||-.|.-+|
T Consensus 503 RGl~vGiaL~~ygrqe-~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn--kair~lLh~aVsD~nDDVrRaAVial 579 (929)
T KOG2062|consen 503 RGLAVGIALVVYGRQE-DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN--KAIRRLLHVAVSDVNDDVRRAAVIAL 579 (929)
T ss_pred HHHHHhHHHHHhhhhh-hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch--hhHHHhhcccccccchHHHHHHHHHh
Confidence 3444445566666532 12233556888899999998877665533222111 11112222 24678888998888888
Q ss_pred HcccccchHhhHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHH
Q 002083 135 CKLINEETIPAVLPQVVELLG-HSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCP 205 (969)
Q Consensus 135 s~I~~~el~~~l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~ 205 (969)
+-+.-.+ +...+.+..+|. +-+|+||--|++|+.=.+-=. -....++.|..+..|..-.|.-.|+.+
T Consensus 580 GFVl~~d--p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt--G~~eAi~lLepl~~D~~~fVRQgAlIa 647 (929)
T KOG2062|consen 580 GFVLFRD--PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGT--GLKEAINLLEPLTSDPVDFVRQGALIA 647 (929)
T ss_pred eeeEecC--hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC--CcHHHHHHHhhhhcChHHHHHHHHHHH
Confidence 8765444 344566677776 568999999999988555422 234456677777788877886655544
No 157
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.33 E-value=1.7e+02 Score=38.74 Aligned_cols=315 Identities=13% Similarity=0.160 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHhCCC--ChHH-HhhhHHHHHHhHh-ccCCCCCCCchHHHHHHHHHHhcC-C------CHHHHH-HHHH
Q 002083 249 FIQIRLLKILALLGSG--DKQA-SENMYTVVGDIFR-KCDSSSNIGNAVLYECICCVSSIY-A------NPKLIE-SAAD 316 (969)
Q Consensus 249 WlQikLLklL~~l~~~--d~~~-se~l~~iL~~iL~-~~~~~~Ni~~AVlyEaik~I~~l~-~------~~~ll~-~ai~ 316 (969)
-+|.+|..+|-.||.. |.+. ...+..+|...+. +.+ -..+++.+++.++.-. + +.+.+. -+.+
T Consensus 493 tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~e-----lr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~Akn 567 (1176)
T KOG1248|consen 493 TLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPE-----LRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKN 567 (1176)
T ss_pred HHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchH-----hHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhH
Confidence 4667788888888754 4433 2233444444443 222 1356777777766542 1 112222 2344
Q ss_pred HHHHHhc---CCChhH------HHHHHHHHH-HHHhhC-hhHHHHhHHhhccccCCCchHHHHH----HHHHhhcccC--
Q 002083 317 VIARFLK---SDSHNL------KYMGIDALG-RLIKTS-PEIAEQHQLAVIDCLEDPDDTLKRK----TFELLYKMTK-- 379 (969)
Q Consensus 317 ~L~~fL~---s~d~Nl------rYvaL~~L~-~I~~~~-P~l~~~h~~~I~~cL~D~D~sIR~k----aLdLL~~L~n-- 379 (969)
-|.++++ +..++- +--.|..+. ...... .++...+...+-....+.|.+++.. -||++..++.
T Consensus 568 fL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~ 647 (1176)
T KOG1248|consen 568 FLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQ 647 (1176)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccc
Confidence 4555543 222222 222333333 222222 3444555666666667777666554 5677777764
Q ss_pred -CCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHH----HHHHHH----hhhCccchH---HHHHHH
Q 002083 380 -SSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQ----TMNKVF----EHAGDLVNI---KVAHNL 447 (969)
Q Consensus 380 -~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id----~L~~ll----~~~gd~v~~---ev~~~l 447 (969)
+++|..+. ++..++...++...++..-+-+..++.. |.-+-+++ .+.+.+ +.....+.. ..+..+
T Consensus 648 ~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L 724 (1176)
T KOG1248|consen 648 TESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRL 724 (1176)
T ss_pred cchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 45555554 4455555444555666655555555544 33333332 222222 111111211 233333
Q ss_pred HHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCC--chhHHHHHHHHhcc--ccCCCCCCChHHHHHHHHHHHhhc--
Q 002083 448 MRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKL--PSVFLQVICWVLGE--YGTADGKVSASYITGKLCDVAEAY-- 521 (969)
Q Consensus 448 i~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~--~e~l~~~i~WILGE--Y~~~~~~~~~~~Il~~L~~~~~~~-- 521 (969)
++... . -.-++...++..++-.+.+... ..... .++..+|- -....+...++.+++.++.++..-
T Consensus 725 ~~~~~----~----e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af-~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 725 LKLLS----A----EHCDLIPKLIPEVILSLKEVNVKARRNAF-ALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHhcc----H----HHHHHHHHHHHHHHHhcccccHHHHhhHH-HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Confidence 33322 0 0123444445544444444322 22222 34566662 111112122466777766654322
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHh
Q 002083 522 SNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVT 581 (969)
Q Consensus 522 ~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL 581 (969)
.+...++..-|.|+.-++.....- -..+..+.+++++.-++.+.+.+++.-|.-|...+
T Consensus 796 gd~~~~~as~Ivai~~il~e~~~~-ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvl 854 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAITHILQEFKNI-LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVL 854 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 223344445366666665543211 11234567788888889999999999999888766
No 158
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=83.29 E-value=1.1e+02 Score=36.69 Aligned_cols=303 Identities=15% Similarity=0.167 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHccc---ccchHhhHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhCCcchh----hHHHHHHHhhcCCCh
Q 002083 125 LIVCAALNAVCKLI---NEETIPAVLPQVVELLGHSK-EAVRRKAIMALHRFYQKSPSSVQ----HLVSNFRKRLCDNDP 196 (969)
Q Consensus 125 ~vralALr~Ls~I~---~~el~~~l~~~V~~lL~d~~-pyVRKkA~lal~kiy~~~Pe~v~----~l~~~l~~lL~D~D~ 196 (969)
-.|.-|++.++... ..+-++.+...+..++.+.. +.+|+.|..-+..+.+..-+... .++..+..-=.|.|.
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~ 84 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDF 84 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhH
Confidence 35667777776532 23567778888899998764 46899988888888877655222 233333322233344
Q ss_pred hHHHHHHHHHHHhhhhCchh-hHHHHHHHHHHHHHHHh------ccCC--CCcCCCCC----CChhHHHHHHHHHHHhCC
Q 002083 197 GVMGATLCPLFDLITVDVNS-YKDLVISFVSILKQVAE------RRLP--KSYDYHQM----PAPFIQIRLLKILALLGS 263 (969)
Q Consensus 197 ~Vv~aAl~~L~ei~~~~p~~-~~~Lv~~lv~iLk~l~~------~~lp--~~y~y~~v----~~PWlQikLLklL~~l~~ 263 (969)
.-...|+.+|.+=-+ +... ..++.|.+..-|..+.. .... +...-.+. .+.=....+|+++....+
T Consensus 85 ~~~l~aL~~LT~~Gr-di~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviK 163 (464)
T PF11864_consen 85 DLRLEALIALTDNGR-DIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIK 163 (464)
T ss_pred HHHHHHHHHHHcCCc-CchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 444445554432111 1111 12333444444433220 0000 00000000 022234556666665433
Q ss_pred CChH--HHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHH---HhcC-CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 002083 264 GDKQ--ASENMYTVVGDIFRKCDSSSNIGNAVLYECICCV---SSIY-ANPKLIESAADVIARFLKSDSHNLKYMGIDAL 337 (969)
Q Consensus 264 ~d~~--~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I---~~l~-~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L 337 (969)
-+.. ..+.+..++..++.-+..+++ ...+-.|++.+ +... -..+-+..++..|++..... ++.=.+.+.+
T Consensus 164 fn~~~l~e~~i~~lv~~i~~iC~~Ts~--~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m 239 (464)
T PF11864_consen 164 FNFNYLDEDEISSLVDQICTICKSTSS--EDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTM 239 (464)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHH
Confidence 2211 112233344444433222222 24555555544 2211 12344556777777775544 5566677778
Q ss_pred HHHHhhCh-hHHHHhHHhhc--ccc-CCCchHHHHHHHHHhhcccCCC---cH-----HH--HHHHHHHHHhhcCChhhH
Q 002083 338 GRLIKTSP-EIAEQHQLAVI--DCL-EDPDDTLKRKTFELLYKMTKSS---NV-----EV--IVDRMIDYMISINDNHYK 403 (969)
Q Consensus 338 ~~I~~~~P-~l~~~h~~~I~--~cL-~D~D~sIR~kaLdLL~~L~n~~---Nv-----~~--IV~eLl~yl~~~~D~~~k 403 (969)
..|++.+- ...-.....|+ ..- ...|..+-|=|+.++-.+.-.. .+ .. ++.-|..-++. .+.-+-
T Consensus 240 ~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~-~~~~v~ 318 (464)
T PF11864_consen 240 RNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS-NSPRVD 318 (464)
T ss_pred HHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC-CCCeeh
Confidence 77776652 33333333444 111 1234556667888877654333 22 22 66666665553 333344
Q ss_pred HHHHHHHHHHh-hhcC-----CchHHHHHHHHHHHh
Q 002083 404 TEIASRCVELA-EQFA-----PSNHWFIQTMNKVFE 433 (969)
Q Consensus 404 ~eli~~I~~la-ekya-----p~~~W~Id~L~~ll~ 433 (969)
-|++..|..+- .+|. .+....++++..++.
T Consensus 319 ~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~ 354 (464)
T PF11864_consen 319 YEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFD 354 (464)
T ss_pred HHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHh
Confidence 45666555555 5543 333445566655543
No 159
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=82.61 E-value=1.5e+02 Score=37.81 Aligned_cols=327 Identities=14% Similarity=0.143 Sum_probs=163.6
Q ss_pred HHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc----cchHhhHHHHHHHhcCCCChHHHHHHH
Q 002083 91 RTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN----EETIPAVLPQVVELLGHSKEAVRRKAI 166 (969)
Q Consensus 91 RlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~----~el~~~l~~~V~~lL~d~~pyVRKkA~ 166 (969)
..|+.....-.-+++.+-.=.-+..+.-+++.+|++|-.+=+-++.+.. ......+.+....++.|....||=.|+
T Consensus 218 acglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~ 297 (759)
T KOG0211|consen 218 ACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAV 297 (759)
T ss_pred hhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHH
Confidence 3344433333223344445556777788889999999888777766532 333445667778888899999999999
Q ss_pred HHHHHHHhhCC---cchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-Cchh-hHHHHHHHHHHHHHHHhccCCCCcC
Q 002083 167 MALHRFYQKSP---SSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV-DVNS-YKDLVISFVSILKQVAERRLPKSYD 241 (969)
Q Consensus 167 lal~kiy~~~P---e~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~-~p~~-~~~Lv~~lv~iLk~l~~~~lp~~y~ 241 (969)
-++..+..... +....+.+.+.....|.+-.|.......+.++... .++. .-.+++.+.+.++.--. .
T Consensus 298 ~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~-------e 370 (759)
T KOG0211|consen 298 ESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEW-------E 370 (759)
T ss_pred HHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhh-------h
Confidence 99999888654 33446778888888888888877766666666542 1221 12334445555442100 0
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCChH---HHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC---CCHHHHHHHH
Q 002083 242 YHQMPAPFIQIRLLKILALLGSGDKQ---ASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY---ANPKLIESAA 315 (969)
Q Consensus 242 y~~v~~PWlQikLLklL~~l~~~d~~---~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~---~~~~ll~~ai 315 (969)
-+..-..-.+-|..|.+.+.. .-+.++..+..+.... | .-|--..+..++.+. +.+..+....
T Consensus 371 -----~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~----~--~~vr~a~a~~~~~~~p~~~k~~ti~~ll 439 (759)
T KOG0211|consen 371 -----VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN----A--LHVRSALASVITGLSPILPKERTISELL 439 (759)
T ss_pred -----hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc----c--chHHHHHhccccccCccCCcCcCccccC
Confidence 001111112222222221100 0011222222222211 1 011111111111111 1111111112
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhCh----hHH-HHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHH
Q 002083 316 DVIARFLKSDSHNLKYMGIDALGRLIKTSP----EIA-EQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRM 390 (969)
Q Consensus 316 ~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P----~l~-~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eL 390 (969)
..+...+....+.++--.+..+..+...+. ... +.+...+...-.|..--+|...++-+-.++...-...+-+++
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~ 519 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKL 519 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHH
Confidence 222333444445555544444443333321 112 223333333333433456666666666656555544444444
Q ss_pred HHHHhhc---CChhhHHHHHHHHHHHhhhcCCchHHHHHHHH-HHHhhhCc
Q 002083 391 IDYMISI---NDNHYKTEIASRCVELAEQFAPSNHWFIQTMN-KVFEHAGD 437 (969)
Q Consensus 391 l~yl~~~---~D~~~k~eli~~I~~laekyap~~~W~Id~L~-~ll~~~gd 437 (969)
..++... ...++++.+......++++|. .+|+...+. +++...++
T Consensus 520 ~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q 568 (759)
T KOG0211|consen 520 AELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQ 568 (759)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcC
Confidence 4444321 123678888888889999987 789887655 44444444
No 160
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.32 E-value=21 Score=37.40 Aligned_cols=70 Identities=13% Similarity=0.333 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh---ChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCC
Q 002083 309 KLIESAADVIARFLKSDSHNLKYMGIDALGRLIKT---SPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSS 381 (969)
Q Consensus 309 ~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~---~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~ 381 (969)
.+.++-.+.+.+++.+.+..+|+.+++.+..+.+. ||.-.. ..++-+..||+..||.+|..++..+....
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cv---p~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCV---PTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHH---hHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 34555667777788888899999999999988864 676543 45777778999999999999988776553
No 161
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=82.29 E-value=60 Score=37.92 Aligned_cols=125 Identities=19% Similarity=0.295 Sum_probs=85.2
Q ss_pred CCCcchhHHHHHHHHhhhccCch--------HHHHHHHHHHhhhcCccHHHHHHHHHHHHcc-----cccchHhhHHHHH
Q 002083 84 DDNLVLKRTGYLAVTLFLNEDHD--------LIILIVNTIQKDLKSDNYLIVCAALNAVCKL-----INEETIPAVLPQV 150 (969)
Q Consensus 84 S~~~~~KRlgYLals~~~~~~~d--------lllL~iNtLqKDL~s~N~~vralALr~Ls~I-----~~~el~~~l~~~V 150 (969)
+++-+.+-.||-.+-.++..... +-.+++=+|.||.+ +...|--||+.+-.+ ...++-..+...|
T Consensus 36 ~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~~~~~vvral 113 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKEIPRGVVRAL 113 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 33366677777766655554322 33466777777765 577888888877543 3446677888899
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhhCCcchhh--HHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 151 VELLGHSKEAVRRKAIMALHRFYQKSPSSVQH--LVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 151 ~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~--l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
..+..|+.+-.|..|+..+.-+...+|+++-+ -+.-+.+.+.|....+..+.+.+++.++
T Consensus 114 vaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 114 VAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 99999999999999999999999999998753 3455556566644444334444444443
No 162
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.76 E-value=57 Score=39.48 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=81.9
Q ss_pred hHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhCchhhHHH
Q 002083 142 TIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDN-DPGVMGATLCPLFDLITVDVNSYKDL 220 (969)
Q Consensus 142 l~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~-D~~Vv~aAl~~L~ei~~~~p~~~~~L 220 (969)
....+...|++.-+|...-..+|=+..++..-...|..+..++..|.++|.+. |-.|+.=+|.+++.++++....|..-
T Consensus 20 ~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAlKsLIliH~ll~~G~~~f~~~ 99 (491)
T KOG0251|consen 20 AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVALKALILIHRLLKEGDPSFEQE 99 (491)
T ss_pred hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehHHHHHHHHHHHhcCcHHHHHH
Confidence 45677888999999988888889889999999999999999999999999887 99999999999999988766556544
Q ss_pred HHHHHHHH--HHHHhccCCCCcCCCCCCChhHHHH
Q 002083 221 VISFVSIL--KQVAERRLPKSYDYHQMPAPFIQIR 253 (969)
Q Consensus 221 v~~lv~iL--k~l~~~~lp~~y~y~~v~~PWlQik 253 (969)
+.++-.+| ..+.++.-+..|+| ..|.+..
T Consensus 100 l~~~~~~l~lS~F~d~s~~~~~d~----safVR~Y 130 (491)
T KOG0251|consen 100 LLSRNLILNLSDFRDKSSSLTWDM----SAFVRTY 130 (491)
T ss_pred HHhcccccchhhhhcccccccchh----hHHHHHH
Confidence 43333333 34455444556665 5676643
No 163
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.53 E-value=1.1e+02 Score=35.62 Aligned_cols=167 Identities=14% Similarity=0.189 Sum_probs=88.3
Q ss_pred HHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcC
Q 002083 167 MALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYD 241 (969)
Q Consensus 167 lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~ 241 (969)
-.+.++++.+|+.-. .+.+.+..++.+.+..|.++++.++--++. +.. .+..+.+.
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~--------~l~~~~~l---------- 65 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEE--------SLQILLKL---------- 65 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHH--------HHHHHHHc----------
Confidence 357788889996443 466777765555558888888877644442 222 22333221
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002083 242 YHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARF 321 (969)
Q Consensus 242 y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~f 321 (969)
.-+|. |.+-|.+-... ..+.++-+.++..++......+.+. ...+..|...
T Consensus 66 ----~id~~---ii~SL~~~~~~-~~ER~QALkliR~~l~~~~~~~~~~---------------------~~vvralvai 116 (371)
T PF14664_consen 66 ----HIDIF---IIRSLDRDNKN-DVEREQALKLIRAFLEIKKGPKEIP---------------------RGVVRALVAI 116 (371)
T ss_pred ----CCchh---hHhhhcccCCC-hHHHHHHHHHHHHHHHhcCCcccCC---------------------HHHHHHHHHH
Confidence 12333 33333332221 2233344455555555321111111 1233444445
Q ss_pred hcCCChhHHHHHHHHHHHHHhhChhHHHHh--HHhhccccCCCchHHHHHHHHHhhcccCCC
Q 002083 322 LKSDSHNLKYMGIDALGRLIKTSPEIAEQH--QLAVIDCLEDPDDTLKRKTFELLYKMTKSS 381 (969)
Q Consensus 322 L~s~d~NlrYvaL~~L~~I~~~~P~l~~~h--~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~ 381 (969)
..+.+.++|.+++..|..|+-.+|+++... ...++..+-|+...+....+..+..+.|.-
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence 555667888888888888888888887542 133444444444445555555555555544
No 164
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.47 E-value=1.6e+02 Score=37.36 Aligned_cols=319 Identities=14% Similarity=0.128 Sum_probs=154.3
Q ss_pred ccchHhhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHh---hCCcchh----hHHHHHHHhh-----cCCChhHHHHHHHH
Q 002083 139 NEETIPAVLPQVVELLGHS-KEAVRRKAIMALHRFYQ---KSPSSVQ----HLVSNFRKRL-----CDNDPGVMGATLCP 205 (969)
Q Consensus 139 ~~el~~~l~~~V~~lL~d~-~pyVRKkA~lal~kiy~---~~Pe~v~----~l~~~l~~lL-----~D~D~~Vv~aAl~~ 205 (969)
..|+-+.+.-.+.++|.|. +-.||=.|+-++--+.. ..++..- .++..+.++| ||.-..|.. .+..
T Consensus 520 ~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~-~ls~ 598 (978)
T KOG1993|consen 520 KLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLN-LLST 598 (978)
T ss_pred hHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHH
Confidence 4555666666777777777 44455555555443322 2344332 2333333443 555554442 2333
Q ss_pred HHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCC
Q 002083 206 LFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDS 285 (969)
Q Consensus 206 L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~ 285 (969)
++..-.....+....++.+|.++=+. .. ..|.+++.+|..|..+...=...+..++++|..+++.+-.
T Consensus 599 ---lI~r~~e~I~P~~~~ivq~lp~LWe~--s~-------~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D 666 (978)
T KOG1993|consen 599 ---LIERVSEHIAPYASTIVQYLPLLWEE--SE-------EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTD 666 (978)
T ss_pred ---HHHHHHHhhhHHHHHHHHHHHHHHhh--hc-------cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcC
Confidence 33222222234455556665554221 11 3689999999999887543333456677777777774421
Q ss_pred CCCCCchHHHH----HHHHHHhcCC--CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhcccc
Q 002083 286 SSNIGNAVLYE----CICCVSSIYA--NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCL 359 (969)
Q Consensus 286 ~~Ni~~AVlyE----aik~I~~l~~--~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL 359 (969)
.+...+-.+.| ---+.+...+ .|+++.. +.-+.-.+..+.-|++.+.--.=..+.-.++.+...|-..|+.-+
T Consensus 667 ~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L-~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~ 745 (978)
T KOG1993|consen 667 PSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLL-FPHLLYIIEQSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKL 745 (978)
T ss_pred CCCCceeehhhhHHHHHHHHHhcccccCHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 11222223322 2222222222 3565543 455555565555677765444334444556778888877777766
Q ss_pred CCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccc
Q 002083 360 EDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLV 439 (969)
Q Consensus 360 ~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v 439 (969)
++-=..||.+.+-.+++++.- -.-++.++.-+.. ...-.-+...| ..-.+|+.--.||+.++-++.-...+.+
T Consensus 746 ~~~l~dvr~egl~avLkivei---li~t~~il~~~~~---~~~L~~lf~~I-~~~~~yP~~~~~yl~vvaRi~l~n~~~~ 818 (978)
T KOG1993|consen 746 NDLLDDVRNEGLQAVLKIVEI---LIKTNPILGSLLF---SPLLSRLFLSI-AENDKYPYVMGEYLLVVARISLRNPSLF 818 (978)
T ss_pred HHHHHHhhHHHHHHHHHHHHH---HHhhhHHHHhhhc---chhhHHHHHHH-HhCCCCchhHHHHHHHHHHHHhcChHHH
Confidence 554345666655554442110 0001112221000 01112233333 1223566666899998887654444322
Q ss_pred hH---------HHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCC
Q 002083 440 NI---------KVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEP 481 (969)
Q Consensus 440 ~~---------ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~ 481 (969)
-. .++..++..=...| ++ -.+|+.|+--+-.+..++...
T Consensus 819 msvlqt~~~~d~~~~~li~~WI~~~--~~-I~~~k~rKl~~LalsSll~t~ 866 (978)
T KOG1993|consen 819 MSVLQTKNTYDILIAMLIGNWILLF--DH-INHPKDRKLNTLALSSLLRTN 866 (978)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHc--cc-CCCHHHhhHHHHHHHHHhccC
Confidence 10 11112211111112 11 236777777666677777653
No 165
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=81.47 E-value=60 Score=41.65 Aligned_cols=190 Identities=13% Similarity=0.171 Sum_probs=119.2
Q ss_pred ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-cchhh---HH-HHHHHhhcCCChhHHHHHHHHHHHhhhhC
Q 002083 139 NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP-SSVQH---LV-SNFRKRLCDNDPGVMGATLCPLFDLITVD 213 (969)
Q Consensus 139 ~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P-e~v~~---l~-~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~ 213 (969)
-.++..-+-+.+...+.|++.-=|+.|+..+..+..... +.... ++ -.+.-.+.|.|..|+..|+..|-.|+...
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 345566677788888899999999999999999998777 33332 22 22334568999999988888887787766
Q ss_pred chhhHHHH----HHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCC
Q 002083 214 VNSYKDLV----ISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNI 289 (969)
Q Consensus 214 p~~~~~Lv----~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni 289 (969)
+..+++++ |.|+..++. .-+.+.-.+++++..++...+ -..|.+.+...+++ .|
T Consensus 327 r~~~~~~~~~v~p~lld~lke---------------kk~~l~d~l~~~~d~~~ns~~--l~~~~~~I~e~lk~----kn- 384 (815)
T KOG1820|consen 327 RPLFRKYAKNVFPSLLDRLKE---------------KKSELRDALLKALDAILNSTP--LSKMSEAILEALKG----KN- 384 (815)
T ss_pred chhhHHHHHhhcchHHHHhhh---------------ccHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHhcC----CC-
Confidence 65555554 333333332 134555556666666654221 13344444444442 22
Q ss_pred CchHHHHHHHHHH----hcC---CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh-hHHHHh
Q 002083 290 GNAVLYECICCVS----SIY---ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP-EIAEQH 351 (969)
Q Consensus 290 ~~AVlyEaik~I~----~l~---~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P-~l~~~h 351 (969)
..+--||...+- .+. .....+..++..+.....+.+.++|-.++.++..+.+.+- ..+.++
T Consensus 385 -p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 385 -PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred -hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345555544432 222 1233455566777777778889999999999999988774 334443
No 166
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=81.35 E-value=23 Score=42.00 Aligned_cols=105 Identities=11% Similarity=0.209 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHhhC-----hhHHHHhHHhhccccCC-CchHHHHHHHHHhhcccCCC------cHHHHHHHHHHHH
Q 002083 327 HNLKYMGIDALGRLIKTS-----PEIAEQHQLAVIDCLED-PDDTLKRKTFELLYKMTKSS------NVEVIVDRMIDYM 394 (969)
Q Consensus 327 ~NlrYvaL~~L~~I~~~~-----P~l~~~h~~~I~~cL~D-~D~sIR~kaLdLL~~L~n~~------Nv~~IV~eLl~yl 394 (969)
..=+=-||..|..+.... -+.|.+-...+++.|+| .|..||..||.+|-.||..+ -.+..+.++++-.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 445566777777777655 34444444567778888 78999999999999999865 3455666666666
Q ss_pred hhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhh
Q 002083 395 ISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEH 434 (969)
Q Consensus 395 ~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~ 434 (969)
.+..| ...+.+...+..++..+ +..-+|..+..++..
T Consensus 381 ~ds~~-~v~~~Aeed~~~~las~--~P~~~I~~i~~~Ilt 417 (516)
T KOG2956|consen 381 KDSQD-EVMRVAEEDCLTTLASH--LPLQCIVNISPLILT 417 (516)
T ss_pred hCCch-hHHHHHHHHHHHHHHhh--CchhHHHHHhhHHhc
Confidence 55333 34444444444444343 335566666666544
No 167
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.28 E-value=34 Score=43.66 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=76.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhCCCC----CchHHH---HHHHHHHHHHHHcCCCCcch-HHHHHHhhc
Q 002083 12 EFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPD----IPKRKM---KEYIIRLVYVEMLGHDASFG-YIHAVKMTH 83 (969)
Q Consensus 12 ~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~~~~----~~~~~~---ke~l~KLiyl~mlG~Dvsf~-~~~vIkl~s 83 (969)
...+++-.|+.....+++...----.++.......+. ....+. ...+.+|+-++ +++.|. -++++++.+
T Consensus 674 s~~~~v~~i~~~~~s~~~~~~~~~~~q~~~~~~~~~~~~la~~~aki~~~~~l~~~lln~~---~~~~~~~~~~~vkl~s 750 (1030)
T KOG1967|consen 674 STLKIVEEIGSTIVSEEEISYLILSVQEFEKCKKDPQIILALLSAKIESAESLLVTLLNLL---IPVSQMQNFAIVKLSS 750 (1030)
T ss_pred cchhhHhhcchhhhhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHhccccccccc
Confidence 3446677777776666665544444444444433332 111110 11122221111 122221 233444443
Q ss_pred C---CCcchhHHHHHHHHhhhccC----------------chHHHHHHHHHHhhhc-CccHHHHHHHHHHHHcccccchH
Q 002083 84 D---DNLVLKRTGYLAVTLFLNED----------------HDLIILIVNTIQKDLK-SDNYLIVCAALNAVCKLINEETI 143 (969)
Q Consensus 84 S---~~~~~KRlgYLals~~~~~~----------------~dlllL~iNtLqKDL~-s~N~~vralALr~Ls~I~~~el~ 143 (969)
. +.+.-++.+|.++.+++... ++.++-+---+-|-|- -.++..-++|.+.|..+.+|++-
T Consensus 751 ~~~~k~~~~~~~~~~~~~~l~~~~~vs~~~v~~y~gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g 830 (1030)
T KOG1967|consen 751 TNALKTTANLKLKEEAIRQLFSAKFVSEKKVENYCGSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTG 830 (1030)
T ss_pred ccchhhhhhhhcccHHHHHHHHHHhhhhHhHhhccCCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCcccc
Confidence 3 34566777888887776521 2223222223344433 35677778999999999888876
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHR 171 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~k 171 (969)
.......-=.+.|.+ -++|.+-.|-.|
T Consensus 831 ~~aa~~fsiim~D~~-~~~~r~~~a~~r 857 (1030)
T KOG1967|consen 831 SPAAKLFSIIMSDSN-PLLKRKGHAEPR 857 (1030)
T ss_pred chHHHhhHhhhccCh-HHhhhccccchh
Confidence 655444433344444 455555455443
No 168
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=81.12 E-value=1.7e+02 Score=38.60 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=81.8
Q ss_pred HHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChH--HHHHHHHHHHHHHhhCCcc--hhhHHH
Q 002083 110 LIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEA--VRRKAIMALHRFYQKSPSS--VQHLVS 185 (969)
Q Consensus 110 L~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~py--VRKkA~lal~kiy~~~Pe~--v~~l~~ 185 (969)
|-++.|++| .|..-+.-||+.+..+...... ..+.+.|.+.+=+ ||-.|+.||.|+.---++. .++++.
T Consensus 646 Mw~~QLr~d---rDVvAQ~EAI~~le~~p~~~s~----~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~ 718 (1180)
T KOG1932|consen 646 MWVYQLRQD---RDVVAQMEAIESLEALPSTASR----SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQ 718 (1180)
T ss_pred HHHHHHHhc---ccHHHHHHHHHHHHcCCcchhH----HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHH
Confidence 566666654 6777888899999887666544 5567777777654 9999999999988765554 357889
Q ss_pred HHHHhhcCCChhHH-HHHHHHHHHhhhhCchhh--HHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHh
Q 002083 186 NFRKRLCDNDPGVM-GATLCPLFDLITVDVNSY--KDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 186 ~l~~lL~D~D~~Vv-~aAl~~L~ei~~~~p~~~--~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l 261 (969)
.++++.|+.+..+. .+-+.. .+.| +..+|..+..++.. +|.+.+-.+--||+||.+-
T Consensus 719 ~F~~~fc~k~stIpKsNnF~~--------~q~Yfvq~~iP~a~a~lR~~-----------~g~cp~~V~~FlLdLlkyN 778 (1180)
T KOG1932|consen 719 FFRKKFCSKDSTIPKSNNFSN--------FQEYFVQCAIPVAFASLRGR-----------EGKCPKEVKAFLLDLLKYN 778 (1180)
T ss_pred HHHHHhccccCCCCCcCcccc--------HHHHHHHHhhHHHHHHhccc-----------cCCChHHHHHHHHHHhhcc
Confidence 99999888765422 111111 1111 22345555665542 4555566677788887653
No 169
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.94 E-value=33 Score=42.74 Aligned_cols=154 Identities=15% Similarity=0.183 Sum_probs=86.6
Q ss_pred HHHHHHhCCC-CCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCc-chhHHHH--HHHHhhhccCchHHHHHHH
Q 002083 38 ETLKRRISEP-DIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNL-VLKRTGY--LAVTLFLNEDHDLIILIVN 113 (969)
Q Consensus 38 aeiR~~f~~~-~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~-~~KRlgY--Lals~~~~~~~dlllL~iN 113 (969)
.++|..+... -+.. |+----|-+.|+|.--..++-+++.-.+...+ ..+|-.= ++|..|..+ |.+ =+
T Consensus 452 e~lKevLy~D~AvsG----EAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq--e~A---d~ 522 (929)
T KOG2062|consen 452 EKLKEVLYNDSAVSG----EAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ--EDA---DP 522 (929)
T ss_pred HHHHHHHhccchhhh----hHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh--hhh---HH
Confidence 3455555432 2332 44455667788998765555556655554333 3444333 344455443 323 33
Q ss_pred HHHhhhcCccHHHHHHHHHH--HHcccccchHhhHHHHHHH-hcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHh
Q 002083 114 TIQKDLKSDNYLIVCAALNA--VCKLINEETIPAVLPQVVE-LLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKR 190 (969)
Q Consensus 114 tLqKDL~s~N~~vralALr~--Ls~I~~~el~~~l~~~V~~-lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~l 190 (969)
.|.+=+.+.+|+.|....-+ |+...+... -++..+.. .++|.+.-|||.|+.|+.=+...+|+.+...+ .+
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgnn--kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V----~l 596 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGNN--KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTV----SL 596 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCch--hhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHH----HH
Confidence 44444556688888533222 222333221 11112222 25689999999999999999999999876544 44
Q ss_pred hc-CCChhHHHHHHHHH
Q 002083 191 LC-DNDPGVMGATLCPL 206 (969)
Q Consensus 191 L~-D~D~~Vv~aAl~~L 206 (969)
|. ..||.|...|..+|
T Consensus 597 Lses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMAL 613 (929)
T ss_pred HhhhcChhhhhhHHHHH
Confidence 43 46888876554443
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.91 E-value=14 Score=47.37 Aligned_cols=133 Identities=12% Similarity=0.116 Sum_probs=94.2
Q ss_pred HHHHHHhhcCCCcchhHH-HHHHHHhhhccCchHHHHHHHHHHhh---------hc---CccHHHHHHHHHHHHcccccc
Q 002083 75 YIHAVKMTHDDNLVLKRT-GYLAVTLFLNEDHDLIILIVNTIQKD---------LK---SDNYLIVCAALNAVCKLINEE 141 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRl-gYLals~~~~~~~dlllL~iNtLqKD---------L~---s~N~~vralALr~Ls~I~~~e 141 (969)
|+.|+||++|+-.++|-+ +++-+.+++-..+=-+ -|-|| |. .-++..|++|-=.|+.|...-
T Consensus 514 FPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~-----dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 514 FPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA-----DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred HHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH-----HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 899999999999999875 5666666654322111 12244 11 224577888877777665321
Q ss_pred -------hHhhHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhCCcch----h-hHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002083 142 -------TIPAVLPQVVELLGH-SKEAVRRKAIMALHRFYQKSPSSV----Q-HLVSNFRKRLCDNDPGVMGATLCPLFD 208 (969)
Q Consensus 142 -------l~~~l~~~V~~lL~d-~~pyVRKkA~lal~kiy~~~Pe~v----~-~l~~~l~~lL~D~D~~Vv~aAl~~L~e 208 (969)
+-..++......|++ +.|..|.-.++||.+++.-+++.- + ...+++..+|.|.-|-|.+||+-+|-.
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 112344455666777 479999999999999999998742 2 367999999999999999999998877
Q ss_pred hhhh
Q 002083 209 LITV 212 (969)
Q Consensus 209 i~~~ 212 (969)
++..
T Consensus 669 fl~~ 672 (1387)
T KOG1517|consen 669 FLSN 672 (1387)
T ss_pred Hhcc
Confidence 7653
No 171
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.40 E-value=43 Score=39.87 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh-h----HHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHH
Q 002083 313 SAADVIARFLKSDSHNLKYMGIDALGRLIKTSP-E----IAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIV 387 (969)
Q Consensus 313 ~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P-~----l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV 387 (969)
+|+..|..+|.+.|...--++|+.+.+|++.-+ + ++.....-++...+....++|+.+.=-|..|++. |=
T Consensus 406 ~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~-----vG 480 (516)
T KOG2956|consen 406 QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR-----VG 480 (516)
T ss_pred hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH-----Hh
Confidence 456666666666666666777788888876532 2 2223334455556777788999998888887653 22
Q ss_pred -HHHHHHHhhc
Q 002083 388 -DRMIDYMISI 397 (969)
Q Consensus 388 -~eLl~yl~~~ 397 (969)
++|..||...
T Consensus 481 ~~~mePhL~~L 491 (516)
T KOG2956|consen 481 MEEMEPHLEQL 491 (516)
T ss_pred HHhhhhHhhhc
Confidence 5777888753
No 172
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.23 E-value=3.1 Score=40.64 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=44.8
Q ss_pred HHHHHHHh-cCCChhHHHHHHHHHHHHHhhChhH---HHH--hHHhhccccCCCchHHHHHHHHHhhccc
Q 002083 315 ADVIARFL-KSDSHNLKYMGIDALGRLIKTSPEI---AEQ--HQLAVIDCLEDPDDTLKRKTFELLYKMT 378 (969)
Q Consensus 315 i~~L~~fL-~s~d~NlrYvaL~~L~~I~~~~P~l---~~~--h~~~I~~cL~D~D~sIR~kaLdLL~~L~ 378 (969)
+..|..+| .+.|+...-||+.-|..+++.+|.- +.+ ....|+.++.++|..||..||..+.+|.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34555566 3456777888888888888888753 332 3457899999999999999998776543
No 173
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.92 E-value=3.3 Score=43.61 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=63.1
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHH
Q 002083 112 VNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSN 186 (969)
Q Consensus 112 iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~ 186 (969)
...+.+=+.|.|+.+|-.|+-++.......-.+.++..+..++.|+..||||...-+|-.++..+|+.+..++..
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 345667778999999999998888887778888888899999999999999999999999999999988766544
No 174
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.82 E-value=1.2e+02 Score=34.65 Aligned_cols=49 Identities=31% Similarity=0.399 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc-ch----hhHHHHHHHhhcCCCh
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKSPS-SV----QHLVSNFRKRLCDNDP 196 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe-~v----~~l~~~l~~lL~D~D~ 196 (969)
.-.|..+|.+.+|-|||.|+.-+.-+--. +- .+ ...++.+.+++.|.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc
Confidence 34677888888888888888655543322 11 11 2356777788888777
No 175
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=79.64 E-value=1.3e+02 Score=35.45 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=44.4
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHH----HHHhhc-CCChhHHHHHHHHHHHhhh
Q 002083 143 IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSN----FRKRLC-DNDPGVMGATLCPLFDLIT 211 (969)
Q Consensus 143 ~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~----l~~lL~-D~D~~Vv~aAl~~L~ei~~ 211 (969)
-..++..+..++.+++|.-|...-..++++|.+.+.....+... |.+.+. ...+..++-.|-.+..++.
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIIN 204 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHh
Confidence 33566677888889999999999999999999988865544333 333333 3455555556666665554
No 176
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.43 E-value=99 Score=33.58 Aligned_cols=128 Identities=17% Similarity=0.133 Sum_probs=69.4
Q ss_pred ccHHHHHHHHHHHHccccc--chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHH-------hhc
Q 002083 122 DNYLIVCAALNAVCKLINE--ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRK-------RLC 192 (969)
Q Consensus 122 ~N~~vralALr~Ls~I~~~--el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~-------lL~ 192 (969)
.++......|.+|..+... ...+.+...+..+....+.-.+--+.--+.++....+-..+.+-+.+.. ...
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~ 92 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFS 92 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccC
Confidence 4444555555555544333 4455555555555555655556666677777777776554322222222 011
Q ss_pred --CCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCC
Q 002083 193 --DNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGS 263 (969)
Q Consensus 193 --D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~ 263 (969)
+....+..+....+.++|..+|+...++++.+..+|+ + -.++=.|.--|+.+..++.
T Consensus 93 ~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~---~-----------~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 93 SKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLN---Q-----------SCDEVAQALALEALAPLCE 151 (234)
T ss_pred CCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh---c-----------cccHHHHHHHHHHHHHHHH
Confidence 1222233333345667777777766666666666653 1 1255577777888887774
No 177
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=79.11 E-value=86 Score=39.22 Aligned_cols=174 Identities=15% Similarity=0.182 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHh-hCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch--hhHHHHH
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQ-KSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN--SYKDLVI 222 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~-~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~--~~~~Lv~ 222 (969)
+..++.+ +.+.+++||- ++.-+..+.. .+|- +.. +..+.. |-.+|+.=.+.=+..|-+++++-|. .+..+.|
T Consensus 241 l~~~l~k-~l~~~~~~rp-~~~~l~~~~ff~D~~-~~a-LrfLD~-l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP 315 (700)
T KOG2137|consen 241 LRESLKK-LLNGDSAVRP-TLDLLLSIPFFSDPG-LKA-LRFLDD-LPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILP 315 (700)
T ss_pred HHHHHHH-HhcCCcccCc-chhhhhcccccCCch-hhh-hhhccc-ccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhh
Confidence 3334443 3466778888 5555554433 3332 221 111111 1124444443333344455554443 2344445
Q ss_pred HHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH--HHhhhHHHHHHhHhccCCCCCCCchHHHHHHHH
Q 002083 223 SFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ--ASENMYTVVGDIFRKCDSSSNIGNAVLYECICC 300 (969)
Q Consensus 223 ~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~--~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~ 300 (969)
.++.-|.. .=++-.+|-++..+...... ...+|+..|..+++..+... ....++|=..+
T Consensus 316 ~L~~el~n-----------------~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~--~~l~i~e~mdl 376 (700)
T KOG2137|consen 316 TLVAELVN-----------------TKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQ--ALLFILENMDL 376 (700)
T ss_pred HHHHHhcc-----------------ccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCccc--chhhHHhhHHH
Confidence 55554421 11222233333333332222 24567777777777543221 13566777777
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 002083 301 VSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKT 343 (969)
Q Consensus 301 I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~ 343 (969)
|..-.+.+++.+.+...|.+-+++.+..++-.+|+.+-.++..
T Consensus 377 L~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~ 419 (700)
T KOG2137|consen 377 LKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES 419 (700)
T ss_pred HHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh
Confidence 7776677777777777777777777788888777777665543
No 178
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=78.46 E-value=1.6e+02 Score=35.59 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=44.3
Q ss_pred HHHHhcC-CCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHH
Q 002083 149 QVVELLG-HSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLF 207 (969)
Q Consensus 149 ~V~~lL~-d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ 207 (969)
.|...|. |+--|||+.-+-.++.+..--|+.-..++.-+...|.|.+.-|.+-|-.++.
T Consensus 194 evle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~il 253 (821)
T COG5593 194 EVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVIL 253 (821)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHH
Confidence 3445555 4678999999999999999999988888888888888877766554444443
No 179
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=78.44 E-value=20 Score=39.21 Aligned_cols=145 Identities=21% Similarity=0.282 Sum_probs=75.4
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCCc------chh-------hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc--hhh
Q 002083 153 LLGHSKEAVRRKAIMALHRFYQKSPS------SVQ-------HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV--NSY 217 (969)
Q Consensus 153 lL~d~~pyVRKkA~lal~kiy~~~Pe------~v~-------~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p--~~~ 217 (969)
+|+|.++.|-|+|+.|+..+|+.-=. ..+ .+-+.+..++.+.+++|..+|+-.+..++...- ...
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 57899999999999999999986322 222 233444455677788888887765544432110 000
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcCCCCCC--ChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHH
Q 002083 218 KDLVISFVSILKQVAERRLPKSYDYHQMP--APFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLY 295 (969)
Q Consensus 218 ~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~--~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVly 295 (969)
.+ +. ..-+.++.-..+| .|++...-|+ .+.+.+++.|..++.... +...++.
T Consensus 81 ~~--~~----------~~~~~d~SL~~vp~~Hp~l~~~~Le----------~Ea~~lL~~Ll~~l~~~~----i~~~~~~ 134 (239)
T PF11935_consen 81 SP--PR----------RGSPNDFSLSSVPPNHPLLNPQQLE----------AEANGLLDRLLDVLQSPH----ISSPLLT 134 (239)
T ss_dssp S---------------GGGTTS--GGGS-TT-SSS-HHHHH----------HHHHHHHHHHHHHHC-TT------HHHHH
T ss_pred Cc--cc----------cccccCCCHHHcCCCCCcCCHHHHH----------HHHHHHHHHHHHHHhhcc----cchHHHH
Confidence 00 00 0001111111111 2444333222 345566676766666432 3456777
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 002083 296 ECICCVSSIY-ANPKLIESAADVIARFLK 323 (969)
Q Consensus 296 Eaik~I~~l~-~~~~ll~~ai~~L~~fL~ 323 (969)
.|++++..|. .-|.+...++..|..|-.
T Consensus 135 a~insL~~Iak~RP~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 135 AIINSLSNIAKQRPQFMSRILPALLSFNP 163 (239)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 7888776664 236666666666666643
No 180
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.19 E-value=1.3e+02 Score=34.29 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHHHc---ccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 002083 122 DNYLIVCAALNAVCK---LINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQ 174 (969)
Q Consensus 122 ~N~~vralALr~Ls~---I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~ 174 (969)
.|+...+.++.+++. -.+.++-..+...+.+++.++++-|||.-+.++..++.
T Consensus 35 ~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 677777777777654 12566777788888888888887788888888887776
No 181
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.94 E-value=30 Score=34.14 Aligned_cols=90 Identities=17% Similarity=0.115 Sum_probs=57.2
Q ss_pred hhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc-------ccchHh-hHHHHHHHhcCC---C
Q 002083 89 LKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI-------NEETIP-AVLPQVVELLGH---S 157 (969)
Q Consensus 89 ~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~-------~~el~~-~l~~~V~~lL~d---~ 157 (969)
.---+-+.++-..+.+++-.-.++..|+|=|+++||.++-+||..|-.+. ..+++. ..+..+.+++.. .
T Consensus 16 ~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~ 95 (133)
T cd03561 16 PDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKY 95 (133)
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCC
Confidence 33444455555556666677788888888899888888888888774321 112222 344456666654 4
Q ss_pred ChHHHHHHHHHHHHHHhhCCc
Q 002083 158 KEAVRRKAIMALHRFYQKSPS 178 (969)
Q Consensus 158 ~pyVRKkA~lal~kiy~~~Pe 178 (969)
++-||+|++..+......++.
T Consensus 96 ~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 96 DPKVREKALELILAWSESFGG 116 (133)
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 667888877777766665543
No 182
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.18 E-value=2.2e+02 Score=36.33 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhC-----CcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh--------CchhhHHHHHHHHHHHHHH
Q 002083 165 AIMALHRFYQKS-----PSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV--------DVNSYKDLVISFVSILKQV 231 (969)
Q Consensus 165 A~lal~kiy~~~-----Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~--------~p~~~~~Lv~~lv~iLk~l 231 (969)
-+..+.|+.|.+ |++++++...+...+.+.|..+....+..|+.+++. +.+.|.+++|.+..+|..+
T Consensus 101 ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL~a~rk~F~el~~~I~~~l~~~ 180 (978)
T KOG1993|consen 101 NAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRLLADRKAFYELAPEILTILAPI 180 (978)
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHhHHHHHHHHHH
Confidence 356678888876 777777778888778888998888888888877663 2345666666666655443
No 183
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=76.98 E-value=45 Score=31.81 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=53.0
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH
Q 002083 150 VVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV 221 (969)
Q Consensus 150 V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv 221 (969)
|.+.-++...---.+.++-+..+...+++.....+..|.+.|.+.++.|+.-||.+|-.++++-...|...+
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i 76 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEV 76 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 344444444444456666677777777788888999999999999999999999988777776666666554
No 184
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=76.98 E-value=1.4e+02 Score=34.14 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=18.2
Q ss_pred ccccccccchhHHHHHHHhcCCCCCCCCcccc
Q 002083 601 IEIDKNLSFLNGYVEQALEKGAQPYIPENERS 632 (969)
Q Consensus 601 ~~~d~~lsfl~~~v~~~l~~Ga~~y~p~~~~~ 632 (969)
+--|+.---+..+-++++..| ||-..+-|.
T Consensus 488 ffddPnrLklgdkLqEavrsG--PYmsKkhrg 517 (524)
T KOG4413|consen 488 FFDDPNRLKLGDKLQEAVRSG--PYMSKKHRG 517 (524)
T ss_pred HcCChhhhhHHHHHHHHhccC--CcccccccC
Confidence 334555445567778888755 676666553
No 185
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=76.85 E-value=1.1e+02 Score=36.51 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHHhc-CCCHHHHHHHH-----HHHHHHhcCC-----ChhHHHHHHHHHHHHHhhChhH
Q 002083 290 GNAVLYECICCVSSI-YANPKLIESAA-----DVIARFLKSD-----SHNLKYMGIDALGRLIKTSPEI 347 (969)
Q Consensus 290 ~~AVlyEaik~I~~l-~~~~~ll~~ai-----~~L~~fL~s~-----d~NlrYvaL~~L~~I~~~~P~l 347 (969)
...+..||.||++++ ..++...+.++ ..+...|... ++++.|+.++.|-.+....+..
T Consensus 45 ~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~ 113 (446)
T PF10165_consen 45 DPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDD 113 (446)
T ss_pred ChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhH
Confidence 357889999999886 44555554433 3456666554 6899999999888777655443
No 186
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.45 E-value=27 Score=34.77 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=62.2
Q ss_pred hhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc---ccch-----HhhHHHHHHH
Q 002083 81 MTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI---NEET-----IPAVLPQVVE 152 (969)
Q Consensus 81 l~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~---~~el-----~~~l~~~V~~ 152 (969)
.++......---..+-++-..+.+++-.--++..|+|-|+++||.+.-+||..+-.+. .+.+ -..++..+.+
T Consensus 13 ATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~ 92 (140)
T PF00790_consen 13 ATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVK 92 (140)
T ss_dssp HT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred HhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHH
Confidence 4444444444455566777777778888899999999999999999999998874331 1111 2235666777
Q ss_pred hcCCC--ChH--HHHHHHHHHHHHHhhC
Q 002083 153 LLGHS--KEA--VRRKAIMALHRFYQKS 176 (969)
Q Consensus 153 lL~d~--~py--VRKkA~lal~kiy~~~ 176 (969)
++.++ .+. ||+|++..+......+
T Consensus 93 l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 93 LIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 66533 233 8999886666554444
No 187
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.02 E-value=45 Score=33.03 Aligned_cols=92 Identities=18% Similarity=0.307 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHHHHHHHHHhccCCCC
Q 002083 162 RRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFVSILKQVAERRLPKS 239 (969)
Q Consensus 162 RKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv~iLk~l~~~~lp~~ 239 (969)
=...++.+.-+.+..++.-...+..|++.|...||.|+..|+.+|-.+.++-...|+..+ ..|++.|..++....
T Consensus 17 dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~--- 93 (133)
T smart00288 17 DWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY--- 93 (133)
T ss_pred CHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC---
Confidence 344556666667777766677888899999999999999999877555554456665544 347777777654321
Q ss_pred cCCCCCCChhHHHHHHHHHHHhC
Q 002083 240 YDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 240 y~y~~v~~PWlQikLLklL~~l~ 262 (969)
..|..+-+++.++....
T Consensus 94 ------~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 94 ------PLPLVKKRILELIQEWA 110 (133)
T ss_pred ------CcHHHHHHHHHHHHHHH
Confidence 24557888888886543
No 188
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.44 E-value=2.3e+02 Score=35.69 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=71.7
Q ss_pred HHHHHHHHhhhcCccHHHHHHHHHHHHc---ccccch--------HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q 002083 109 ILIVNTIQKDLKSDNYLIVCAALNAVCK---LINEET--------IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP 177 (969)
Q Consensus 109 lL~iNtLqKDL~s~N~~vralALr~Ls~---I~~~el--------~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P 177 (969)
.|.--.|-+-|+-+|..||..|+-.+-. |+.|++ ++.-...+.++|.|+-|.||..|+..+.|++..+=
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 4777788899999999999999988765 566665 23334467889999999999999999999888763
Q ss_pred c-----chhhHHHHHHHh-hcCCChhHHHHHHHHHHHh
Q 002083 178 S-----SVQHLVSNFRKR-LCDNDPGVMGATLCPLFDL 209 (969)
Q Consensus 178 e-----~v~~l~~~l~~l-L~D~D~~Vv~aAl~~L~ei 209 (969)
+ ++.+++.++.+- -.|.-..|..+.+.-|.++
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~ 290 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMI 290 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHH
Confidence 3 334455444432 2455556666655544444
No 189
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.42 E-value=1.5e+02 Score=33.50 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh----hHHHHHHHhhc----CCChhHHHHHHHHHHHhhh
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ----HLVSNFRKRLC----DNDPGVMGATLCPLFDLIT 211 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~----~l~~~l~~lL~----D~D~~Vv~aAl~~L~ei~~ 211 (969)
.....+++.+++.+|+-+|+..+.++....+..-. ..++.+...|+ ..+..++..|+..|.++++
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 34445588899999999999999999988776433 34444444444 3455566667777777764
No 190
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=75.14 E-value=1.8e+02 Score=34.32 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChh-HHHHhHH----hhccccCCCchHHHHHHHHHhhcccCCC
Q 002083 308 PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPE-IAEQHQL----AVIDCLEDPDDTLKRKTFELLYKMTKSS 381 (969)
Q Consensus 308 ~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~-l~~~h~~----~I~~cL~D~D~sIR~kaLdLL~~L~n~~ 381 (969)
..+....+..|.......+...|-.-|.+|..|++.-|. ++..|.. -++.+|+-+|..++.-+|++|..+.++.
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 566666777777777766666888888999999987774 4445544 4577888899999999999999988887
No 191
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=74.85 E-value=22 Score=37.38 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=63.7
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-CCcch----hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh
Q 002083 143 IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQK-SPSSV----QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 143 ~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~-~Pe~v----~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
.+.++|...++|.....--|--|..++..+.+. .++.+ ++++.-+++.|+.+|+.|+.+++.+|..++...+..=
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 346778888888876555677788888888888 66543 5677778899999999999999999888865554433
Q ss_pred HHHHHHHHHHHHH
Q 002083 218 KDLVISFVSILKQ 230 (969)
Q Consensus 218 ~~Lv~~lv~iLk~ 230 (969)
..|+|++-++|..
T Consensus 116 ~aLvPyyrqLLp~ 128 (183)
T PF10274_consen 116 EALVPYYRQLLPV 128 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 192
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.56 E-value=34 Score=38.74 Aligned_cols=117 Identities=20% Similarity=0.279 Sum_probs=81.4
Q ss_pred HHHHHHHHhhhc-cCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc---c---cchHhhHHHHHHHhcCCCChHHHH
Q 002083 91 RTGYLAVTLFLN-EDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI---N---EETIPAVLPQVVELLGHSKEAVRR 163 (969)
Q Consensus 91 RlgYLals~~~~-~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~---~---~el~~~l~~~V~~lL~d~~pyVRK 163 (969)
+.-|+....+-. .++| .+.+...+-|.|.+-...+-+|..|.++. . ..+...++..|.+-++..+.-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 455666655543 2344 55667778899999888888888887432 1 223445666788888999999999
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHh-h---cCCChhHHHHHHHHHHHhh
Q 002083 164 KAIMALHRFYQKSPSSVQHLVSNFRKR-L---CDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 164 kA~lal~kiy~~~Pe~v~~l~~~l~~l-L---~D~D~~Vv~aAl~~L~ei~ 210 (969)
.|++|+.-||..+-+.+.+..+.+... | .+.+-.|...|-.+|..+.
T Consensus 148 aA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV 198 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMV 198 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 999999999998887776544444433 3 3456677777766665554
No 193
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=73.53 E-value=1.8e+02 Score=34.54 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=71.6
Q ss_pred HHHHHHHHHHh--hhcCcc----HHHHHHHHHHHHcccccchH-----hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 002083 107 LIILIVNTIQK--DLKSDN----YLIVCAALNAVCKLINEETI-----PAVLPQVVELLGHSKEAVRRKAIMALHRFYQK 175 (969)
Q Consensus 107 lllL~iNtLqK--DL~s~N----~~vralALr~Ls~I~~~el~-----~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~ 175 (969)
+..-.+|.+++ |+.+.. .+-++.-|-.+-..+.++|- +.++..+...+.+.+-..--.+++++..+.|.
T Consensus 266 l~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~ 345 (604)
T KOG4500|consen 266 LLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR 345 (604)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc
Confidence 44456677765 777654 44555555555444555532 23666777778888888888999999999999
Q ss_pred CCcchh----hHHHHHHHhh-----cCCChhHHHHHHHHHHHhh
Q 002083 176 SPSSVQ----HLVSNFRKRL-----CDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 176 ~Pe~v~----~l~~~l~~lL-----~D~D~~Vv~aAl~~L~ei~ 210 (969)
+...+. ++++++.++| .|.|..++-|++++|..+.
T Consensus 346 D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 346 DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 876553 5677777766 3567778888888887664
No 194
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=73.43 E-value=2.8 Score=33.29 Aligned_cols=39 Identities=26% Similarity=0.506 Sum_probs=31.4
Q ss_pred HHHHHHhhChhHHH--HhHHhhccccCCCchHHHHHHHHHh
Q 002083 336 ALGRLIKTSPEIAE--QHQLAVIDCLEDPDDTLKRKTFELL 374 (969)
Q Consensus 336 ~L~~I~~~~P~l~~--~h~~~I~~cL~D~D~sIR~kaLdLL 374 (969)
+|..++..+|.++. .-+..|..++.|+++++|.-++++|
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 46677888888764 4456788889999999999999985
No 195
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.26 E-value=1.9e+02 Score=34.89 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=88.3
Q ss_pred CcchhHHHHHHHHhhhccCchH--HHHHHHHHHhhh---cCccHHHHHHHHHHHHccccc------chHhhHHHHHHHhc
Q 002083 86 NLVLKRTGYLAVTLFLNEDHDL--IILIVNTIQKDL---KSDNYLIVCAALNAVCKLINE------ETIPAVLPQVVELL 154 (969)
Q Consensus 86 ~~~~KRlgYLals~~~~~~~dl--llL~iNtLqKDL---~s~N~~vralALr~Ls~I~~~------el~~~l~~~V~~lL 154 (969)
....+|++=.+...-.....++ ..+..|.++-+. .+|+..+|++|+|.|++..+. .+...++..|...|
T Consensus 229 ~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL 308 (533)
T KOG2032|consen 229 EKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGL 308 (533)
T ss_pred hcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHH
Confidence 3445565555432222222221 245666666654 588999999999999987654 33445666677776
Q ss_pred CC-CChHHHHHHHHHHHHHHhhCCc-ch----hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHH
Q 002083 155 GH-SKEAVRRKAIMALHRFYQKSPS-SV----QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDL 220 (969)
Q Consensus 155 ~d-~~pyVRKkA~lal~kiy~~~Pe-~v----~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~L 220 (969)
-| -+.-|-=-|+.|+.++..+--. .+ -++...++.+..|.++.+..+|+.++-.+.+--...|+..
T Consensus 309 ~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 309 YDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred hcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 55 4577888888888888765422 22 2466778888999999999999988877766544445443
No 196
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=73.10 E-value=28 Score=43.16 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=72.8
Q ss_pred CCchhHHHHHHHHhccCChHHH--HHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHcCCC---CcchHHH----
Q 002083 8 GQSKEFLDLVKSIGEARSKAEE--DRIVLNEIETLKRRISEPDIPKR-KMKEYIIRLVYVEMLGHD---ASFGYIH---- 77 (969)
Q Consensus 8 ~~sk~l~dlIk~Ir~~ks~~eE--~~~I~~ElaeiR~~f~~~~~~~~-~~ke~l~KLiyl~mlG~D---vsf~~~~---- 77 (969)
++...|.|++-.+-+-+-+++| .++... |.+ .+.. .+.. .+++.+..|+..+-.|.- +--.++.
T Consensus 248 ff~n~fvd~~~fLeel~lks~~eK~~Ff~~-L~~---~l~~--~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ 321 (690)
T KOG1243|consen 248 FFRNDFVDTLLFLEELRLKSVEEKQKFFSG-LID---RLDN--FPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKD 321 (690)
T ss_pred cccchHHHHHHHHHhcccCcHHHHHHHHHH-HHH---HHhh--hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhh
Confidence 3677788888777766554443 444322 222 2221 2211 223455555555555552 1122333
Q ss_pred -------------HHHhhcCCCcchhHHHHHHHHhhhccCc--hHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccc-
Q 002083 78 -------------AVKMTHDDNLVLKRTGYLAVTLFLNEDH--DLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEE- 141 (969)
Q Consensus 78 -------------vIkl~sS~~~~~KRlgYLals~~~~~~~--dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~e- 141 (969)
+++|+.+.|-..|-+---++..|.+.=+ .+---+--.+..-+.|+|+.+|..+|++|..|...-
T Consensus 322 ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 322 LDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 3444444444443333333333332211 111122233444455666666666666665433211
Q ss_pred ---hHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 002083 142 ---TIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQK 175 (969)
Q Consensus 142 ---l~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~ 175 (969)
+-..++....++-.|.++-+|-+...|+.||-..
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeecccccc
Confidence 1222333333333455556666666666665544
No 197
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=72.80 E-value=89 Score=40.31 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=55.4
Q ss_pred cccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch---hhHHHHHHHhhcCCChhHHHHHHHHHH
Q 002083 138 INEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV---QHLVSNFRKRLCDNDPGVMGATLCPLF 207 (969)
Q Consensus 138 ~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v---~~l~~~l~~lL~D~D~~Vv~aAl~~L~ 207 (969)
-...+.+.++-.+..+.+|.-.-|||+++-++.++.+..|-.+ ..|+-.+..+++|.+..|...|.-++.
T Consensus 609 D~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~ 681 (1529)
T KOG0413|consen 609 DEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIM 681 (1529)
T ss_pred chhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455677777777788899999999999999999999999876 357777778888888888777665433
No 198
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=72.63 E-value=1.7e+02 Score=32.80 Aligned_cols=93 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCCCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcccc
Q 002083 469 SAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRK 548 (969)
Q Consensus 469 ~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~ 548 (969)
.++..+.+-+.+. ...++--++||+|+-..- .-+..|.+.+..-.|.+.||....-|+.-+.
T Consensus 187 eaI~al~~~l~~~--SalfrhEvAfVfGQl~s~-------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--------- 248 (289)
T KOG0567|consen 187 EAINALIDGLADD--SALFRHEVAFVFGQLQSP-------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA--------- 248 (289)
T ss_pred HHHHHHHHhcccc--hHHHHHHHHHHHhhccch-------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc---------
Confidence 3455555555443 334555779999998752 2233445555444678889998877777542
Q ss_pred CCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHhc
Q 002083 549 VDMLPECQSLIEELSASHSTDLQQRAYELEAVTG 582 (969)
Q Consensus 549 ~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~ 582 (969)
.+++..+|+.++.+.+.-|++-|-.-+.++.
T Consensus 249 ---~e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 249 ---DEDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ---CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 2678999999999988888888877766654
No 199
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.54 E-value=59 Score=32.83 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHHHHHHHHHhccCCCCc
Q 002083 163 RKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFVSILKQVAERRLPKSY 240 (969)
Q Consensus 163 KkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv~iLk~l~~~~lp~~y 240 (969)
...++-+.-+....++.-++.+..|++.|...||.|+..||.+|-.+.++-+..|+.-+ ..|++.|..++..+
T Consensus 18 w~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~----- 92 (144)
T cd03568 18 WGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR----- 92 (144)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-----
Confidence 34555566666666666667888888999999999999999887666666566666544 45777777776542
Q ss_pred CCCCCCChhHHHHHHHHHHHhC
Q 002083 241 DYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 241 ~y~~v~~PWlQikLLklL~~l~ 262 (969)
.++=.+-+++.++..+.
T Consensus 93 -----~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 93 -----VHPTVKEKLREVVKQWA 109 (144)
T ss_pred -----CCHHHHHHHHHHHHHHH
Confidence 24567778888886654
No 200
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.53 E-value=12 Score=45.01 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred HHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHh-hhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcC-C
Q 002083 79 VKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQK-DLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLG-H 156 (969)
Q Consensus 79 Ikl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqK-DL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~-d 156 (969)
-+|..+.+-.+|.-|-+.+.+-+--...+- ++.++.. -.++.|.-+|-.|.-+|+-++-.+ +.+++...++|. +
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTgn~~--vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~tvelLs~s 597 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTGNLG--VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVGTVELLSES 597 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCCcch--hHhhhheeecccCchHHHHHHHHheeeeEecC--cchhhHHHHHhhhc
Confidence 356666666666666655544332222211 1222222 245666777776666666555443 233444445554 4
Q ss_pred CChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHH
Q 002083 157 SKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLC 204 (969)
Q Consensus 157 ~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~ 204 (969)
.+++||--.+.|+.-.+--.-+ ....+.+..+..|.+..|..+|..
T Consensus 598 hN~hVR~g~AvaLGiacag~G~--~~a~diL~~L~~D~~dfVRQ~AmI 643 (926)
T COG5116 598 HNFHVRAGVAVALGIACAGTGD--KVATDILEALMYDTNDFVRQSAMI 643 (926)
T ss_pred cchhhhhhhHHHhhhhhcCCcc--HHHHHHHHHHhhCcHHHHHHHHHH
Confidence 4677777766666644433322 223455555666766666554443
No 201
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.42 E-value=72 Score=32.07 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=68.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHHH
Q 002083 149 QVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFVS 226 (969)
Q Consensus 149 ~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv~ 226 (969)
.|.++-.....-.-...++-+.-+.+..+..-++.+..|++.|...|+.|+..|+.+|-.++++-...|+..+ ..|++
T Consensus 8 ~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 8 LIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred HHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 3444444444445556667777777777776677888999999999999999999877555444355565544 45777
Q ss_pred HHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 227 ILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 227 iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
-|..++.. -.++=.+-++|.++....
T Consensus 88 ~l~~l~~~----------~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 88 ELKDLIKT----------TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHcc----------cCCHHHHHHHHHHHHHHH
Confidence 77766542 124566777777776543
No 202
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.37 E-value=81 Score=31.71 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=68.5
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHHHHHH
Q 002083 152 ELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFVSILK 229 (969)
Q Consensus 152 ~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv~iLk 229 (969)
+.-.....---..+++-+.-+....|+.-++.+..+++.|..+|+.|+.-||.+|-.+.++-...|+..+ ..|++-|.
T Consensus 8 kAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 8 KATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred HHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence 3333333344456677777777777877677888899999999999999999887665555455665544 34565555
Q ss_pred HHHhccCCCCcCCC-CCCChhHHHHHHHHHHHhC
Q 002083 230 QVAERRLPKSYDYH-QMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 230 ~l~~~~lp~~y~y~-~v~~PWlQikLLklL~~l~ 262 (969)
.++..+ |. ...++=.+-++|.++....
T Consensus 88 kl~~~k------~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 88 KLVSPK------YLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHhccc------cCCCCCCHHHHHHHHHHHHHHH
Confidence 554321 11 1235667778888876553
No 203
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=71.18 E-value=9.8 Score=39.47 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhCCcchh--hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchh
Q 002083 160 AVRRKAIMALHRFYQKSPSSVQ--HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNS 216 (969)
Q Consensus 160 yVRKkA~lal~kiy~~~Pe~v~--~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~ 216 (969)
-+||.|.-|++-++...++.+. .+++.+..-|.| ++.+..-+...+..++...|..
T Consensus 42 elRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~ 99 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE 99 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH
Confidence 4999999999999998877654 678888888999 8877766666666776666653
No 204
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.76 E-value=1.3e+02 Score=34.76 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=67.5
Q ss_pred hhcCccHHHHHHHHHHHHccc--ccchHhhHH-----HHHHHhcC-CCChHHHHHHHHHHHHHHhhCCcchhhH-----H
Q 002083 118 DLKSDNYLIVCAALNAVCKLI--NEETIPAVL-----PQVVELLG-HSKEAVRRKAIMALHRFYQKSPSSVQHL-----V 184 (969)
Q Consensus 118 DL~s~N~~vralALr~Ls~I~--~~el~~~l~-----~~V~~lL~-d~~pyVRKkA~lal~kiy~~~Pe~v~~l-----~ 184 (969)
=+++++..+|.+|.++++.+. +|..-+.++ ..+.++|+ +....+|+||..|+..+.|.++-....+ .
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 678999999999999998753 444444333 35666665 4566799999999999999998765532 5
Q ss_pred HHHHHhhcCCChhH--HHHHHHHHHHhhhhCc
Q 002083 185 SNFRKRLCDNDPGV--MGATLCPLFDLITVDV 214 (969)
Q Consensus 185 ~~l~~lL~D~D~~V--v~aAl~~L~ei~~~~p 214 (969)
.-|++.|.+++..| ..-++.++..+...+.
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 66778887754444 4445555555555443
No 205
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=70.70 E-value=1.2e+02 Score=39.08 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-c-----
Q 002083 105 HDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP-S----- 178 (969)
Q Consensus 105 ~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P-e----- 178 (969)
......+.|.|..-+.+....+|-.++.++=.+.+---...+.+.|...+.|.+|-+|--..+.+-|+++... .
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 3566788889999899988888887777776666655567888999999999999999999999999999876 2
Q ss_pred chhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc
Q 002083 179 SVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 179 ~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
.+..+.+.+....+|.|.-|.-||+.++..+.+...
T Consensus 411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 344688888889999999999999888877766544
No 206
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.28 E-value=75 Score=31.35 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHH--HHHHHHHHHHhccCCCC
Q 002083 162 RRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVI--SFVSILKQVAERRLPKS 239 (969)
Q Consensus 162 RKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~--~lv~iLk~l~~~~lp~~ 239 (969)
=..+++.+.-+.+..++.-+..+..|++.|...||.|+..|+.+|-.+.++-+..|+..+- .|++-|..++... +
T Consensus 17 D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~-- 93 (133)
T cd03561 17 DWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-P-- 93 (133)
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-C--
Confidence 3556677777777777777788889999999999999999998775555444455655442 3444455554321 0
Q ss_pred cCCCCCCChhHHHHHHHHHHHh
Q 002083 240 YDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 240 y~y~~v~~PWlQikLLklL~~l 261 (969)
..++=.+-+++.++..+
T Consensus 94 -----~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 94 -----KYDPKVREKALELILAW 110 (133)
T ss_pred -----CCCHHHHHHHHHHHHHH
Confidence 12455666666666544
No 207
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.23 E-value=57 Score=40.41 Aligned_cols=124 Identities=24% Similarity=0.334 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHH
Q 002083 123 NYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGAT 202 (969)
Q Consensus 123 N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aA 202 (969)
.+-+-++||-+|+-=+..+|+ +..+-.+|.-..|.+||..=+|+.-++-.+|+. ..++.+.+...|.|..|..+|
T Consensus 621 ~~avLgiAliAMgeeig~eM~---lR~f~h~l~yge~~iRravPLal~llsvSNPq~--~vlDtLsk~shd~D~eva~na 695 (878)
T KOG2005|consen 621 ELAVLGIALIAMGEEIGSEMV---LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV--NVLDTLSKFSHDGDLEVAMNA 695 (878)
T ss_pred cchhhhhhhhhhhhhhhhHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc--hHHHHHHHhccCcchHHHHHH
Confidence 356778899998876666664 455566677789999999999999999999985 367888899999999999888
Q ss_pred HHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC
Q 002083 203 LCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG 264 (969)
Q Consensus 203 l~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~ 264 (969)
+.++- ++-..-++ .++..+|+|+.. | |++=++-..-++|.+-|..++.+
T Consensus 696 IfamG-LiGAGTnN-----ARla~mLrqlaS------Y-yyKd~~~Lf~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 696 IFAMG-LIGAGTNN-----ARLAQMLRQLAS------Y-YYKDSKALFVVRIAQGLVHLGKG 744 (878)
T ss_pred HHHhc-cccCCcch-----HHHHHHHHHHHH------H-HhccchhHHHHHHHHHHHHhcCC
Confidence 87653 33222221 245678888743 2 33444556667788888888765
No 208
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=69.89 E-value=42 Score=33.07 Aligned_cols=58 Identities=24% Similarity=0.208 Sum_probs=30.1
Q ss_pred hCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHH
Q 002083 175 KSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVA 232 (969)
Q Consensus 175 ~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~ 232 (969)
.+++.+..+.+.|.+.|.|+++.|..=+|-+|-.+|...+..|+..+..-..+++++.
T Consensus 31 ~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~ 88 (122)
T cd03572 31 KSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECA 88 (122)
T ss_pred cCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHH
Confidence 3445555556666666666666665555665555555444444443333333444443
No 209
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=69.62 E-value=39 Score=41.94 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh-hHH-HHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHH
Q 002083 308 PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP-EIA-EQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEV 385 (969)
Q Consensus 308 ~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P-~l~-~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~ 385 (969)
.++-...+..|.+++.+.|.-+|.+-|+.+-+.+..-+ +.+ .+-..++..-+.|.|.+||..+|.-+.-++..=|-..
T Consensus 325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~ 404 (690)
T KOG1243|consen 325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN 404 (690)
T ss_pred cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh
Confidence 34555678899999999999999999999988876543 222 2223456667789999999998877666655444445
Q ss_pred HHHHHHHHHhh
Q 002083 386 IVDRMIDYMIS 396 (969)
Q Consensus 386 IV~eLl~yl~~ 396 (969)
+=.||++|+..
T Consensus 405 Ln~Ellr~~ar 415 (690)
T KOG1243|consen 405 LNGELLRYLAR 415 (690)
T ss_pred hcHHHHHHHHh
Confidence 55678887764
No 210
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=68.75 E-value=2.4e+02 Score=33.15 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=63.7
Q ss_pred CCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcC
Q 002083 85 DNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLG 155 (969)
Q Consensus 85 ~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~ 155 (969)
.+...||++--++-.|+.--|+++--++|.-..=+.+.+.-+|--|++-|..++..+...-+.+.+.++|+
T Consensus 36 ~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred cchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 46689999999999999999999999998877666778889999999999999999998888888899988
No 211
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=68.51 E-value=57 Score=32.29 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=64.7
Q ss_pred hhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc-------cch-HhhHHHHHHH
Q 002083 81 MTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN-------EET-IPAVLPQVVE 152 (969)
Q Consensus 81 l~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~-------~el-~~~l~~~V~~ 152 (969)
.++......---.-+.++-..+.+++-.--++..|+|=|+++||.+.-.||+.|-.+.. .++ -..++..+.+
T Consensus 8 ATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 8 ATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred HcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH
Confidence 33334444444555677777777777888999999999999999999999988854321 111 2235556677
Q ss_pred hcCCC--ChHHHHHHHHHHHHHHhhC
Q 002083 153 LLGHS--KEAVRRKAIMALHRFYQKS 176 (969)
Q Consensus 153 lL~d~--~pyVRKkA~lal~kiy~~~ 176 (969)
++.++ .+.||+|++..+..-+..+
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77653 2348998887777655544
No 212
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.19 E-value=2.8e+02 Score=33.54 Aligned_cols=110 Identities=18% Similarity=0.293 Sum_probs=68.2
Q ss_pred chhHHHHHHHHhhhccCchHHHHHHHHHHh-hhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHH
Q 002083 88 VLKRTGYLAVTLFLNEDHDLIILIVNTIQK-DLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAI 166 (969)
Q Consensus 88 ~~KRlgYLals~~~~~~~dlllL~iNtLqK-DL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~ 166 (969)
.-|.++-+-...+-..+.++++|++..++| .+-+.|-.+.. ++ .+..-+.++.-..+|-.||..+
T Consensus 301 rrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~-~~-------------~iveKL~klfp~~h~dL~~~tl 366 (791)
T KOG1222|consen 301 RRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVME-QN-------------GIVEKLLKLFPIQHPDLRKATL 366 (791)
T ss_pred HHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHH-hc-------------cHHHHHHHhcCCCCHHHHHHHH
Confidence 456677777777777888988888877776 22334433211 11 2233445666778889999888
Q ss_pred HHHHHHHhhC---Ccchh-hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhC
Q 002083 167 MALHRFYQKS---PSSVQ-HLVSNFRKRLCDNDPGVMGATLCPLFDLITVD 213 (969)
Q Consensus 167 lal~kiy~~~---Pe~v~-~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~ 213 (969)
+-++.+---. |..+. .+++.+..+|.+.... +-|+++++.+..++
T Consensus 367 ~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD 415 (791)
T KOG1222|consen 367 MLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDD 415 (791)
T ss_pred HHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCc
Confidence 8777654321 33333 4788888888654432 23677777775443
No 213
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=68.18 E-value=65 Score=32.53 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=52.0
Q ss_pred HHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc--------ccchHhhHHHHHHHhcCC-CChHHH
Q 002083 92 TGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI--------NEETIPAVLPQVVELLGH-SKEAVR 162 (969)
Q Consensus 92 lgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~--------~~el~~~l~~~V~~lL~d-~~pyVR 162 (969)
-+-|-++-..+.+++-.--++..|+|=|+++||.+.-.||..|-.+. ..--...++..+.+++.. .++-||
T Consensus 19 ~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk 98 (144)
T cd03568 19 GLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVK 98 (144)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHH
Confidence 34445566666666677788999999999999999988888763221 111122444556666655 566677
Q ss_pred HHHHHHHHHH
Q 002083 163 RKAIMALHRF 172 (969)
Q Consensus 163 KkA~lal~ki 172 (969)
.+.+..+...
T Consensus 99 ~kil~li~~W 108 (144)
T cd03568 99 EKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHH
Confidence 7765555443
No 214
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=67.60 E-value=14 Score=38.30 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=61.4
Q ss_pred HHHHhhhcCccHHHHHHHHHHHHccccc-chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHH
Q 002083 113 NTIQKDLKSDNYLIVCAALNAVCKLINE-ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFR 188 (969)
Q Consensus 113 NtLqKDL~s~N~~vralALr~Ls~I~~~-el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~ 188 (969)
-.+.+=..|+|+.+|-.|.-++...... .-.+.++..+..++.|...||||...-+|.-++..+|+.+..++....
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~ 184 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNG 184 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 4566777889998888888777765444 567778888888889999999999999999999999998876665543
No 215
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=67.53 E-value=2.7e+02 Score=33.28 Aligned_cols=140 Identities=15% Similarity=0.252 Sum_probs=83.9
Q ss_pred CChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhcc-CCCCCCCc-hHHHHHHHHHHhcCC--CHH----HHHHHHHH
Q 002083 246 PAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKC-DSSSNIGN-AVLYECICCVSSIYA--NPK----LIESAADV 317 (969)
Q Consensus 246 ~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~-~~~~Ni~~-AVlyEaik~I~~l~~--~~~----ll~~ai~~ 317 (969)
.|+++---++|++..+...-......+.+-|..++... ...+|... --+||++-+++.... +++ +-..+...
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP 121 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence 48898888899988876543333333333333333321 12233221 357999998877643 444 33445666
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhCh-hHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhh
Q 002083 318 IARFLKSDSHNLKYMGIDALGRLIKTSP-EIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 318 L~~fL~s~d~NlrYvaL~~L~~I~~~~P-~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~ 396 (969)
+...|..+=.+.-=-+++.|..|+..+| .-+.+....++.+|-.|. + . -...|+-.+++=|..|++.
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~--l--------W--e~~gniPalvrLL~a~i~k 189 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA--L--------W--ERRGNIPALVRLLQAYIKK 189 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG--G--------G--GSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc--h--------h--ccCCCcCcHHHHHHHHHHh
Confidence 6767765546666667999999999888 445555566776666652 1 1 2456899898888888876
Q ss_pred c
Q 002083 397 I 397 (969)
Q Consensus 397 ~ 397 (969)
.
T Consensus 190 ~ 190 (435)
T PF03378_consen 190 D 190 (435)
T ss_dssp H
T ss_pred C
Confidence 4
No 216
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=67.47 E-value=2.7e+02 Score=35.43 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=60.7
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN 215 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~ 215 (969)
..++..+..+..++-+.||++|+-.++-+..--|+.-..++-.+...|.|.+.-+.+-|..+|..+...+|.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 344445555566788999999999999999999998888888888889999999999999999889888885
No 217
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.98 E-value=41 Score=39.25 Aligned_cols=63 Identities=27% Similarity=0.399 Sum_probs=51.8
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh----hHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 148 PQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ----HLVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 148 ~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
.++..-+.|.+.-|||-|...+-.++..+|+.+. .+++.+..+++|.|..|.-+..-++-.++
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i 127 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLI 127 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHH
Confidence 4556678899999999999999999999998775 46788888999999999877666654433
No 218
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=66.87 E-value=1.9e+02 Score=31.32 Aligned_cols=124 Identities=10% Similarity=0.104 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhcc-------ccCCCc
Q 002083 292 AVLYECICCVSSIYANP-KLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVID-------CLEDPD 363 (969)
Q Consensus 292 AVlyEaik~I~~l~~~~-~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~-------cL~D~D 363 (969)
.+....++++-.+.... .....+++.|..+........+|++++.+..+.+.++..|...+..+.. ...+.+
T Consensus 16 ~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~ 95 (234)
T PF12530_consen 16 ELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKD 95 (234)
T ss_pred HHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCc
Confidence 45555566655544333 5556678888888888778889999999999999998777443332222 112222
Q ss_pred hH----HH-HHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhh
Q 002083 364 DT----LK-RKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQ 416 (969)
Q Consensus 364 ~s----IR-~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laek 416 (969)
.. |- ..++.=++. .+++....++..|..++.+..++..+.-.+..|..+|+.
T Consensus 96 ~~~~~~i~~a~s~~~ic~-~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 96 EFWECLISIAASIRDICC-SRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred chHHHHHHHHHHHHHHHH-hChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 11 11 111111111 245577888888888883224556666677777777754
No 219
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.69 E-value=56 Score=31.74 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHhhC-CcchhhHHHHHHHhhcCCChhHHHHHHHH
Q 002083 159 EAVRRKAIMALHRFYQKS-PSSVQHLVSNFRKRLCDNDPGVMGATLCP 205 (969)
Q Consensus 159 pyVRKkA~lal~kiy~~~-Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~ 205 (969)
++||.|.+.++..++..+ |+.-+++++.+..++.. ++...-..+.+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~i 48 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRI 48 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHH
Confidence 689999999999999876 88777788888877765 34333333433
No 220
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=66.04 E-value=50 Score=36.87 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChh----------HHHHhHHhhccccC--------CCchHHHHHHH
Q 002083 310 LIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPE----------IAEQHQLAVIDCLE--------DPDDTLKRKTF 371 (969)
Q Consensus 310 ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~----------l~~~h~~~I~~cL~--------D~D~sIR~kaL 371 (969)
..-.++-++..++.+.++.+|.-|+..|..+...-|. +++-+...+..||. +....+=..+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 3445677888999888999999999999999875432 24445566677775 43345555566
Q ss_pred HHhhcc
Q 002083 372 ELLYKM 377 (969)
Q Consensus 372 dLL~~L 377 (969)
..|+.+
T Consensus 196 ~~L~~L 201 (282)
T PF10521_consen 196 PALLSL 201 (282)
T ss_pred HHHHHH
Confidence 666555
No 221
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=65.97 E-value=1.7e+02 Score=33.45 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHHHHhCC-CChHHHhhhH
Q 002083 246 PAPFIQIRLLKILALLGS-GDKQASENMY 273 (969)
Q Consensus 246 ~~PWlQikLLklL~~l~~-~d~~~se~l~ 273 (969)
..+-++.-.|++|+.... ......++++
T Consensus 68 ~~~~~~~~~LrLL~~iv~f~~g~~a~~v~ 96 (330)
T PF11707_consen 68 SKPSLTNPALRLLTAIVSFDGGALAREVL 96 (330)
T ss_pred CcHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 346778889999998877 4445555554
No 222
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.87 E-value=3.8e+02 Score=34.32 Aligned_cols=268 Identities=16% Similarity=0.236 Sum_probs=147.4
Q ss_pred hHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcc---cccchHhhH------HHHHHHhcCCCChH
Q 002083 90 KRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL---INEETIPAV------LPQVVELLGHSKEA 160 (969)
Q Consensus 90 KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I---~~~el~~~l------~~~V~~lL~d~~py 160 (969)
-.+|--++..+.. ++|..-++.. -+..-|..||-.|+.-++.+ +..++-..+ +..+..+|.|++..
T Consensus 107 dd~g~~iae~fik-~qd~I~lll~----~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~ 181 (970)
T KOG0946|consen 107 DDLGLWIAEQFIK-NQDNITLLLQ----SLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREP 181 (970)
T ss_pred hHHHHHHHHHHHc-CchhHHHHHH----HHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhh
Confidence 3455555555554 3444433333 34556888999998888765 344443333 34578889999999
Q ss_pred HHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcC---CCh-hHHHHHHHHHHHhhhhCch---hhH--HHHHHHHH
Q 002083 161 VRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCD---NDP-GVMGATLCPLFDLITVDVN---SYK--DLVISFVS 226 (969)
Q Consensus 161 VRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D---~D~-~Vv~aAl~~L~ei~~~~p~---~~~--~Lv~~lv~ 226 (969)
||--|++-+.-+-+-+|..-+ ..++.+-..+.. -|- .|+--++.+|..+++.|.. .|+ ..+|++.+
T Consensus 182 IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~k 261 (970)
T KOG0946|consen 182 IRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLK 261 (970)
T ss_pred hchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHh
Confidence 999999999999998887533 334444444432 233 5777888889899887753 233 34566666
Q ss_pred HHHHHHhccCCCCcCCCCCCChhHHH------HHHHHHHHhCC-CChHH----------HhhhHHHHHHhHhccCCCCCC
Q 002083 227 ILKQVAERRLPKSYDYHQMPAPFIQI------RLLKILALLGS-GDKQA----------SENMYTVVGDIFRKCDSSSNI 289 (969)
Q Consensus 227 iLk~l~~~~lp~~y~y~~v~~PWlQi------kLLklL~~l~~-~d~~~----------se~l~~iL~~iL~~~~~~~Ni 289 (969)
+|....-++- ----|.-- -+|++++.+.. +++.. +..++++|..++-+.. +
T Consensus 262 lL~~f~~~d~--------Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~----v 329 (970)
T KOG0946|consen 262 LLSVFEFGDG--------EVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG----V 329 (970)
T ss_pred hcCcccccCc--------ccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC----C
Confidence 6654321110 01135433 34555655543 33221 1234455555555432 2
Q ss_pred CchHHHHHHHHHHhcC----CCHHHH------------HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhChhHHHHhH
Q 002083 290 GNAVLYECICCVSSIY----ANPKLI------------ESAADVIARFLK-SDSHNLKYMGIDALGRLIKTSPEIAEQHQ 352 (969)
Q Consensus 290 ~~AVlyEaik~I~~l~----~~~~ll------------~~ai~~L~~fL~-s~d~NlrYvaL~~L~~I~~~~P~l~~~h~ 352 (969)
..-|+-|++.++...- .+.... ...+--+..+.. ...+.+||.++.++......+-+.=....
T Consensus 330 p~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 330 PADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred cHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence 2346667766664320 011000 001111222333 34577888888888877766655444444
Q ss_pred Hhhcc-ccCCCchHHHHHHHHHh
Q 002083 353 LAVID-CLEDPDDTLKRKTFELL 374 (969)
Q Consensus 353 ~~I~~-cL~D~D~sIR~kaLdLL 374 (969)
..++. |-++.+-+++.-.|.+.
T Consensus 410 ~tllp~~~nst~Nsl~ag~l~~~ 432 (970)
T KOG0946|consen 410 KTLLPSSTNSTSNSLSAGQLLLV 432 (970)
T ss_pred HHHhhhhccccccchhhhhHHHH
Confidence 44444 33444446666666543
No 223
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=65.77 E-value=11 Score=27.53 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002083 183 LVSNFRKRLCDNDPGVMGATLCPLFDLIT 211 (969)
Q Consensus 183 l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~ 211 (969)
+++.+.++++|.++.|..+|+..|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46788899999999999999888877653
No 224
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=64.95 E-value=59 Score=36.35 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=51.7
Q ss_pred chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch----h------hHHHHHHHhhc--------CCChhHHHHH
Q 002083 141 ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV----Q------HLVSNFRKRLC--------DNDPGVMGAT 202 (969)
Q Consensus 141 el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v----~------~l~~~l~~lL~--------D~D~~Vv~aA 202 (969)
+..+-++|.+..++.|..+.+|-+++.++.++....|... . -+.+.+..+|. |....++..|
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 3356788999999999999999999999999999877644 2 23444455554 5566666666
Q ss_pred HHHHHHhhh
Q 002083 203 LCPLFDLIT 211 (969)
Q Consensus 203 l~~L~ei~~ 211 (969)
.-++..+++
T Consensus 195 y~~L~~L~~ 203 (282)
T PF10521_consen 195 YPALLSLLK 203 (282)
T ss_pred HHHHHHHHH
Confidence 666666644
No 225
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.83 E-value=3.8e+02 Score=33.94 Aligned_cols=163 Identities=18% Similarity=0.266 Sum_probs=90.6
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHH-cCCCCcchHHHHHHh-h---cCCCcchhHHHHHHH-Hhhhcc-C--ch
Q 002083 36 EIETLKRRISEPDIPKRKMKEYIIRLVYVEM-LGHDASFGYIHAVKM-T---HDDNLVLKRTGYLAV-TLFLNE-D--HD 106 (969)
Q Consensus 36 ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~m-lG~Dvsf~~~~vIkl-~---sS~~~~~KRlgYLal-s~~~~~-~--~d 106 (969)
-++.|.++++..+-..+ ++...|+ .+| .-+..++-|.++++- + .-+....|-+-+++. ..+++. + .|
T Consensus 6 r~~~If~k~Q~s~agh~--~kl~~k~--~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~D 81 (892)
T KOG2025|consen 6 RMQLIFNKIQQSDAGHY--SKLLAKV--MEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEED 81 (892)
T ss_pred HHHHHHHHHHhhhcchH--HHHHHHH--HHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhh
Confidence 35667777765544331 1222222 222 223356678888871 1 234455555555543 222221 2 23
Q ss_pred HHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc------cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHh--hCCc
Q 002083 107 LIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN------EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQ--KSPS 178 (969)
Q Consensus 107 lllL~iNtLqKDL~s~N~~vralALr~Ls~I~~------~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~--~~Pe 178 (969)
+.-=..-.+.|-..+++--||--.+..++.+.+ .+++.-+...+...|.|..|.||.-|+.|+.|+-- .+++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 222223344455556666666555555554433 44555555666667789999999999999998763 2232
Q ss_pred chhhHHHHHHHhh-cCCChhHHHHHHH
Q 002083 179 SVQHLVSNFRKRL-CDNDPGVMGATLC 204 (969)
Q Consensus 179 ~v~~l~~~l~~lL-~D~D~~Vv~aAl~ 204 (969)
. .....+..++ +|.++-|..+|+.
T Consensus 162 ~--~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 162 C--PVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred c--cHHHHHHHHHhcCCcHHHHHHHHH
Confidence 1 2344555555 6888889988764
No 226
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=64.74 E-value=76 Score=31.92 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=53.1
Q ss_pred HHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc--------cchHhhHHHHHHHhcC-CCChHHHHHHH
Q 002083 96 AVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN--------EETIPAVLPQVVELLG-HSKEAVRRKAI 166 (969)
Q Consensus 96 als~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~--------~el~~~l~~~V~~lL~-d~~pyVRKkA~ 166 (969)
.++-..+.+++-.--++..|+|-|+++|+.+.-+||..|-.+.. .-.-..++..+.+++. ..++-||+|++
T Consensus 27 eicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil 106 (142)
T cd03569 27 EICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKIL 106 (142)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHH
Confidence 34444444444566788999999999999999999987743211 1112244455666665 57788999988
Q ss_pred HHHHHHHhhC
Q 002083 167 MALHRFYQKS 176 (969)
Q Consensus 167 lal~kiy~~~ 176 (969)
..+..-...+
T Consensus 107 ~li~~W~~~f 116 (142)
T cd03569 107 ELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHh
Confidence 7776655443
No 227
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=64.37 E-value=51 Score=33.14 Aligned_cols=55 Identities=11% Similarity=0.023 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHH
Q 002083 291 NAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIA 348 (969)
Q Consensus 291 ~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~ 348 (969)
.+.+.|.+-.|-. .+ ..-+.|+..|.+-|.+.++++.+.+|..|-.+++....-|
T Consensus 19 w~~ileicD~In~-~~--~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~f 73 (139)
T cd03567 19 WEAIQAFCEQINK-EP--EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERF 73 (139)
T ss_pred HHHHHHHHHHHHc-CC--ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 4666777766642 22 2334577888888899999999999999999998765444
No 228
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.94 E-value=2.5e+02 Score=34.43 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhC-------chhhHHHHHHHHHHHHH
Q 002083 184 VSNFRKRLCDNDPGVMGATLCPLFDLITVD-------VNSYKDLVISFVSILKQ 230 (969)
Q Consensus 184 ~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~-------p~~~~~Lv~~lv~iLk~ 230 (969)
++.+.+++.|.|+..+.++++.|.|+++.. |+.++-|.|++..+++-
T Consensus 49 LellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~i 102 (881)
T COG5110 49 LELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEI 102 (881)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHH
Confidence 566778889999999999999999999853 44556566666666654
No 229
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.94 E-value=12 Score=42.21 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=75.9
Q ss_pred cchHHHHHHhhcCCCcchhHHHHHHHHhhhcc-----CchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhH
Q 002083 72 SFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNE-----DHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAV 146 (969)
Q Consensus 72 sf~~~~vIkl~sS~~~~~KRlgYLals~~~~~-----~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l 146 (969)
...-+.|++-+.+..-..=|...+.+.-+|.. +.++-.+++-.+.|--+ .|-++|.-|.++|-.+.+.-.-..+
T Consensus 128 ~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~~~ 206 (334)
T KOG2933|consen 128 HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQKL 206 (334)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccChHHH
Confidence 33455667777777777778888887776643 22444556655555433 5778898888888888888777888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQK 175 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~ 175 (969)
++.+..++.|.++.||.+|++|..++...
T Consensus 207 L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 207 LRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred HHHHHHHHhhhchhhhhhhhcccccccee
Confidence 99999999999999999999998876543
No 230
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=61.20 E-value=16 Score=37.50 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=20.2
Q ss_pred HhhccccCCCchHHHHHHHHHhhccc
Q 002083 353 LAVIDCLEDPDDTLKRKTFELLYKMT 378 (969)
Q Consensus 353 ~~I~~cL~D~D~sIR~kaLdLL~~L~ 378 (969)
..|..||..++..+|..+++||..+|
T Consensus 161 ~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 161 NLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 45777888889999999999998876
No 231
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=59.47 E-value=3.3e+02 Score=31.43 Aligned_cols=155 Identities=14% Similarity=0.229 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCCCCcchHHHHHH-hhcCCCcchhHHHHHHHHhhhcc-C----chHHHHHHHHHHhhh----cCccHH
Q 002083 56 EYIIRLVYVEMLGHDASFGYIHAVK-MTHDDNLVLKRTGYLAVTLFLNE-D----HDLIILIVNTIQKDL----KSDNYL 125 (969)
Q Consensus 56 e~l~KLiyl~mlG~Dvsf~~~~vIk-l~sS~~~~~KRlgYLals~~~~~-~----~dlllL~iNtLqKDL----~s~N~~ 125 (969)
.++-||. -.|.|.-+-.-++-.+. -+-.++-..|-+.+=-+..+++. | +++.+.+-|-|.|-+ -..|..
T Consensus 65 scLERLf-kakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedde 143 (524)
T KOG4413|consen 65 SCLERLF-KAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDE 143 (524)
T ss_pred HHHHHHH-hhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHH
Confidence 4444443 34566654444443333 23334444444443333333332 2 244444445566643 345667
Q ss_pred HHHHHHHHHHccc-ccchHhhHHH-------HHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhh-
Q 002083 126 IVCAALNAVCKLI-NEETIPAVLP-------QVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRL- 191 (969)
Q Consensus 126 vralALr~Ls~I~-~~el~~~l~~-------~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL- 191 (969)
+.-.|..++.+|. .+.-.+.+.+ ...++....+..+|-+..--+.++|...|+... .+++.+..-|
T Consensus 144 VAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElk 223 (524)
T KOG4413|consen 144 VAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK 223 (524)
T ss_pred HHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc
Confidence 7778888888763 2333333332 122233345778999999999999999998764 3566665444
Q ss_pred cCCChhHHHHHHHHHHHhhh
Q 002083 192 CDNDPGVMGATLCPLFDLIT 211 (969)
Q Consensus 192 ~D~D~~Vv~aAl~~L~ei~~ 211 (969)
.-.|..|+.+++-+.+++..
T Consensus 224 GteDtLVianciElvteLae 243 (524)
T KOG4413|consen 224 GTEDTLVIANCIELVTELAE 243 (524)
T ss_pred CCcceeehhhHHHHHHHHHH
Confidence 44899999998888887764
No 232
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.34 E-value=13 Score=36.36 Aligned_cols=30 Identities=13% Similarity=0.387 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 002083 314 AADVIARFLKSDSHNLKYMGIDALGRLIKT 343 (969)
Q Consensus 314 ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~ 343 (969)
+...+..++.+.|+++||=||.++.+|+..
T Consensus 87 ~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 87 AKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999998754
No 233
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=56.44 E-value=76 Score=33.40 Aligned_cols=118 Identities=22% Similarity=0.210 Sum_probs=69.5
Q ss_pred hhHHHHHHHHhhhccC---c--hHHHHHHHHHHhhhcCccHHHHHHHHHHHHccccc-----------------------
Q 002083 89 LKRTGYLAVTLFLNED---H--DLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINE----------------------- 140 (969)
Q Consensus 89 ~KRlgYLals~~~~~~---~--dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~----------------------- 140 (969)
.||.-|-|+..++.+. . .-.-|++ .+ +.|+++-+|+.|+.+++.+...
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sLlt-~i---l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~ 93 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSLLT-CI---LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSS 93 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcchhH-HH---HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHH
Confidence 4778888999888766 1 1011111 22 4578999999999999875321
Q ss_pred ---chHhhHHHHHHHhcCCC-ChHHHHHHHHHHHHHH------hhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 141 ---ETIPAVLPQVVELLGHS-KEAVRRKAIMALHRFY------QKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 141 ---el~~~l~~~V~~lL~d~-~pyVRKkA~lal~kiy------~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
.++-.+...+...|.+. ++-+---.+-|+.-+. +..++.+..++..++.++.+.|+.|..+++.++--+.
T Consensus 94 tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 94 TLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 12223333334444332 2222222222222222 2345677788888888999999999988887765544
No 234
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=56.00 E-value=4.1e+02 Score=31.46 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=92.0
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHh
Q 002083 182 HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 182 ~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l 261 (969)
.++..|..++...|+.-.......|+.+....+..-..+...+.++|.+.+. ....+.+...||++|..+
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~----------e~~~~~gI~elLeil~si 202 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIY----------ETERHNGIAELLEILGSI 202 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHH----------TTS--STHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc----------CcccccCHHHHHHHHHHH
Confidence 4777777888888888777666666666655443322233455666666553 234567788899999877
Q ss_pred CCCCh-HHHhhhHHHHHHhHhccCCCCCC--CchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 002083 262 GSGDK-QASENMYTVVGDIFRKCDSSSNI--GNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALG 338 (969)
Q Consensus 262 ~~~d~-~~se~l~~iL~~iL~~~~~~~Ni--~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~ 338 (969)
..+-. ...++....+..+|-........ =+.-+..|+..++. .++.+...++..|.++-=..++.=.-+-|.-+.
T Consensus 203 i~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~--kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~ 280 (409)
T PF01603_consen 203 INGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE--KDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELE 280 (409)
T ss_dssp HTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH--H-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHH
T ss_pred HhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHhCCCCCchhHHHHHHHHH
Confidence 55311 12222333333332211111111 01233444444332 345555555555555543334444445556666
Q ss_pred HHHhhC-hhHHHHh----HHhhccccCCCchHHHHHHHHHh
Q 002083 339 RLIKTS-PEIAEQH----QLAVIDCLEDPDDTLKRKTFELL 374 (969)
Q Consensus 339 ~I~~~~-P~l~~~h----~~~I~~cL~D~D~sIR~kaLdLL 374 (969)
.|+..- |.-+.+. ...+-.|+..+...|..+||.+.
T Consensus 281 ~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 281 EILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 666533 3333332 23455677777777877777653
No 235
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=55.45 E-value=6.3e+02 Score=33.45 Aligned_cols=295 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHH--HHHhhhccCchHHHHHHHHHHhhhc-----
Q 002083 48 DIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYL--AVTLFLNEDHDLIILIVNTIQKDLK----- 120 (969)
Q Consensus 48 ~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYL--als~~~~~~~dlllL~iNtLqKDL~----- 120 (969)
+++.|..|+.+.|.++ ..+.-....+-|+ .+..+....+|++-.+|+.+++++.
T Consensus 453 nlNtKa~RkrLvKal~-------------------~vprt~ldllPyYsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hk 513 (1128)
T KOG2051|consen 453 NLNTKANRKRLVKALF-------------------VVPRTRLDLLPYYSRLVATLSKCMPDVATELVTMLRKEFRSHLHK 513 (1128)
T ss_pred HhccHHHHHHHHHhhh-------------------cccchhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q ss_pred --CccHHHHHHHHHHHH-----cccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc---chhhHHHHHH--
Q 002083 121 --SDNYLIVCAALNAVC-----KLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPS---SVQHLVSNFR-- 188 (969)
Q Consensus 121 --s~N~~vralALr~Ls-----~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe---~v~~l~~~l~-- 188 (969)
..|...+-.-.|+++ .++.+.++-..+..+..-++|.+--+--.-+-.+.|++..+|+ .+..+++.++
T Consensus 514 K~q~~ietk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rk 593 (1128)
T KOG2051|consen 514 KAQINIETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRK 593 (1128)
T ss_pred hhhhhhhhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHH
Q ss_pred ---HhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCC
Q 002083 189 ---KRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGD 265 (969)
Q Consensus 189 ---~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d 265 (969)
..|.-++..++-+|+..+ .|=-+.+ +++...
T Consensus 594 K~a~~lDsr~~~~iENay~~~----------------------------------------~PPe~~~------~~~k~r 627 (1128)
T KOG2051|consen 594 KRASALDSRQATLIENAYYLC----------------------------------------NPPERSK------RLSKKR 627 (1128)
T ss_pred HHHhhhchHHHHHHHHhHHhc----------------------------------------cChhhcc------cccccC
Q ss_pred hHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC
Q 002083 266 KQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY-ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS 344 (969)
Q Consensus 266 ~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~-~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~ 344 (969)
+...+-+..+|..=|. ..-+.-+++++-.+. .+++...-++.++.+-=.-+..|+..++ .+|.-|...+
T Consensus 628 ~p~~efiR~Li~~dL~---------k~tvd~~lkllRkl~W~D~e~~~yli~~~~k~w~iky~~i~~lA-~llaGL~~y~ 697 (1128)
T KOG2051|consen 628 PPMQEFIRYLIRSDLS---------KDTVDRVLKLLRKLDWSDPEVKQYLISCFSKPWKIKYQNIHALA-SLLAGLSSYH 697 (1128)
T ss_pred CcHHHHHHHHHHHHhc---------cccHHHHHHHHHhcccccHHHHHHHHHHhhhhhccccccHHHHH-HHHHHHHhhc
Q ss_pred hhHHHHhHHhhcccc------CCCchHHHHH-HHHHhhcccCCCcHHH--HHHHHHHHHhhcCChh------------hH
Q 002083 345 PEIAEQHQLAVIDCL------EDPDDTLKRK-TFELLYKMTKSSNVEV--IVDRMIDYMISINDNH------------YK 403 (969)
Q Consensus 345 P~l~~~h~~~I~~cL------~D~D~sIR~k-aLdLL~~L~n~~Nv~~--IV~eLl~yl~~~~D~~------------~k 403 (969)
|.++..-...++.-+ +|+-..-||. ....|..|+|=+=++. |++.|..++.-..... ||
T Consensus 698 ~~fvi~VID~vlE~Ir~glEin~~~~nQrriA~aryL~ELynfemvds~vIl~tLy~~i~~g~~~~~~~~~ldppddlFR 777 (1128)
T KOG2051|consen 698 PEFVIHVIDHVLEDIRPGLEINDYVSNQRRIALARYLGELYNFEMVDSDVILNTLYHLISLGHFENLTPSALDPPDDLFR 777 (1128)
T ss_pred hhhhhhhHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcccccCCCCcccCCChHHHHH
Q ss_pred HHHHHHHHHHhhhc
Q 002083 404 TEIASRCVELAEQF 417 (969)
Q Consensus 404 ~eli~~I~~laeky 417 (969)
..+|..|.+.|-.|
T Consensus 778 irlV~~lL~tc~~y 791 (1128)
T KOG2051|consen 778 IRLVCMLLQTCGPY 791 (1128)
T ss_pred HHHHHHHHHHcccc
No 236
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=54.93 E-value=1.1e+02 Score=35.76 Aligned_cols=90 Identities=19% Similarity=0.072 Sum_probs=67.9
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcc--------cccchHhhHH
Q 002083 76 IHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL--------INEETIPAVL 147 (969)
Q Consensus 76 ~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I--------~~~el~~~l~ 147 (969)
-.+.|...-.+-.++-=+-|.++-....++|..--++-.|.|-|.+.++.|+-+||+.+..+ +-+--...+.
T Consensus 11 ~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~ 90 (462)
T KOG2199|consen 11 QDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFT 90 (462)
T ss_pred HHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHH
Confidence 34556666666677777777888888899999999999999999999999999998877532 2233345667
Q ss_pred HHHHHhcC-CCChHHHHHH
Q 002083 148 PQVVELLG-HSKEAVRRKA 165 (969)
Q Consensus 148 ~~V~~lL~-d~~pyVRKkA 165 (969)
..+.+++. ..++-|++|-
T Consensus 91 ~el~al~~~~~h~kV~~k~ 109 (462)
T KOG2199|consen 91 TELRALIESKAHPKVCEKM 109 (462)
T ss_pred HHHHHHHhhcccHHHHHHH
Confidence 77888887 5677787773
No 237
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.85 E-value=98 Score=37.79 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=63.2
Q ss_pred CcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHH-----HHHHHHHHcccccchHhhHHHHHHHh-cCCCCh
Q 002083 86 NLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIV-----CAALNAVCKLINEETIPAVLPQVVEL-LGHSKE 159 (969)
Q Consensus 86 ~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vr-----alALr~Ls~I~~~el~~~l~~~V~~l-L~d~~p 159 (969)
.-..||-.=+.+.+...-..|++-=.||-+..|.. +..| ++||-..+. .+... ...+... ++|.+.
T Consensus 495 he~i~Rglgig~aLi~ygrqe~add~I~ell~d~d---s~lRy~G~fs~alAy~GT-gn~~v----v~~lLh~avsD~nD 566 (926)
T COG5116 495 HERIKRGLGIGFALILYGRQEMADDYINELLYDKD---SILRYNGVFSLALAYVGT-GNLGV----VSTLLHYAVSDGND 566 (926)
T ss_pred hhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCch---HHhhhccHHHHHHHHhcC-Ccchh----HhhhheeecccCch
Confidence 33466655555555555556666666776665554 4444 344433322 22322 2233333 678999
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcC-CChhHHHH
Q 002083 160 AVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCD-NDPGVMGA 201 (969)
Q Consensus 160 yVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D-~D~~Vv~a 201 (969)
-|||+|++|+.-++..+|+.+...+ ++|.+ .|+.|...
T Consensus 567 DVrRAAViAlGfvc~~D~~~lv~tv----elLs~shN~hVR~g 605 (926)
T COG5116 567 DVRRAAVIALGFVCCDDRDLLVGTV----ELLSESHNFHVRAG 605 (926)
T ss_pred HHHHHHHHheeeeEecCcchhhHHH----HHhhhccchhhhhh
Confidence 9999999999999999999775433 44544 56776543
No 238
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=54.75 E-value=99 Score=34.49 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=63.5
Q ss_pred HHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhCCcchhhHHHHHH
Q 002083 111 IVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGH--SKEAVRRKAIMALHRFYQKSPSSVQHLVSNFR 188 (969)
Q Consensus 111 ~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d--~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~ 188 (969)
+||.|-.-|.....+.|--+--+++.+..+.-++.+ .+.|.+ .+|+||--|+-||..|-. + +.++.|.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L----~k~L~d~~E~pMVRhEaAeALGaIa~--e----~~~~vL~ 257 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSL----IKVLLDETEHPMVRHEAAEALGAIAD--E----DCVEVLK 257 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHH----HHHHHhhhcchHHHHHHHHHHHhhcC--H----HHHHHHH
Confidence 577888888888888888888888888888765544 444443 478999999999886653 3 3456777
Q ss_pred HhhcCCChhHHHHHHHHH
Q 002083 189 KRLCDNDPGVMGATLCPL 206 (969)
Q Consensus 189 ~lL~D~D~~Vv~aAl~~L 206 (969)
+.+.|.++.|.-++..+|
T Consensus 258 e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVAL 275 (289)
T ss_pred HHcCCcHHHHHHHHHHHH
Confidence 888888888776665554
No 239
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=54.15 E-value=1.9e+02 Score=35.32 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=34.3
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcC
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCD 193 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D 193 (969)
+..+..|.+.+...++.-|+.|+.+|. .+|- +..++++|...+++
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~----TDsG-L~~LlPyFv~fIae 250 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLE----TDSG-LQQLLPYFVTFIAE 250 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhc----cCcc-HHHHHHHHHHHHhh
Confidence 456678888888899999999988875 4443 45677888877765
No 240
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=53.60 E-value=20 Score=28.46 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=10.6
Q ss_pred hHHHHHHHhcCCCChHHHHHHH
Q 002083 145 AVLPQVVELLGHSKEAVRRKAI 166 (969)
Q Consensus 145 ~l~~~V~~lL~d~~pyVRKkA~ 166 (969)
.+...|.+.+.|+++.||++|+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav 39 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAV 39 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHH
Confidence 4444444445555555555444
No 241
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=52.24 E-value=3.4e+02 Score=31.26 Aligned_cols=191 Identities=12% Similarity=0.140 Sum_probs=93.5
Q ss_pred HHHHHHHHhcCCCHHHH------HHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhChhHH---HHhHHhhccccCCC-
Q 002083 295 YECICCVSSIYANPKLI------ESAADVIARFLKS--DSHNLKYMGIDALGRLIKTSPEIA---EQHQLAVIDCLEDP- 362 (969)
Q Consensus 295 yEaik~I~~l~~~~~ll------~~ai~~L~~fL~s--~d~NlrYvaL~~L~~I~~~~P~l~---~~h~~~I~~cL~D~- 362 (969)
|=|++|...+...++.+ ..|...+...++. .+..++|-.|-.+-.+. -+|.++ .++...|...+.=-
T Consensus 167 lfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqdi~K~~dli~dli~iVk 245 (432)
T COG5231 167 LFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQDIDKMDDLINDLIAIVK 245 (432)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666665554333322 1344455555543 34688898887766543 345444 33333333333211
Q ss_pred ---chHHHHHHHHHhhcccCCCc------------HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhc--CCchHHHH
Q 002083 363 ---DDTLKRKTFELLYKMTKSSN------------VEVIVDRMIDYMISINDNHYKTEIASRCVELAEQF--APSNHWFI 425 (969)
Q Consensus 363 ---D~sIR~kaLdLL~~L~n~~N------------v~~IV~eLl~yl~~~~D~~~k~eli~~I~~laeky--ap~~~W~I 425 (969)
-.-|-|..+.|+..+++.+- +..-|+-|.+ +..+|++++.++-+--..+.+.+ -..+.-|+
T Consensus 246 ~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~e--rkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~ 323 (432)
T COG5231 246 ERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLE--RKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHh--cCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 12344445666666677442 3333333322 12457666655432112222221 11223333
Q ss_pred HHH-HHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCC
Q 002083 426 QTM-NKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTA 501 (969)
Q Consensus 426 d~L-~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~ 501 (969)
.-| ..++.-.+.++.++.|+.=++.+.+. .-.++..+.++++... +...++++|-=||.|...
T Consensus 324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd------------ny~i~k~L~~~lq~n~-~nt~i~vAc~Di~~~Vr~ 387 (432)
T COG5231 324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKD------------NYEIVKVLKKYLQSNN-PNTWICVACSDIFQLVRA 387 (432)
T ss_pred HHHhhCcccCCCcccccCchhhhHHHHhhh------------hHHHHHHHHHHHhcCC-CCceEeeeHhhHHHHHHh
Confidence 322 23445556667777777655544321 1346677888887443 233456667777777654
No 242
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=52.17 E-value=3.6e+02 Score=32.81 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=41.0
Q ss_pred CChhHHHHHHHHHHHHHhhChhHHHH---hHHhhccccCCCchHHHHHHHHHhhcc
Q 002083 325 DSHNLKYMGIDALGRLIKTSPEIAEQ---HQLAVIDCLEDPDDTLKRKTFELLYKM 377 (969)
Q Consensus 325 ~d~NlrYvaL~~L~~I~~~~P~l~~~---h~~~I~~cL~D~D~sIR~kaLdLL~~L 377 (969)
.+.++|-.+..+|..|+++.|.+|.. +...+|..|++++..+|.-.-+-|..|
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl 441 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSL 441 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence 45789999999999999999999843 445677888888777777655555444
No 243
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=52.08 E-value=1.8e+02 Score=35.08 Aligned_cols=154 Identities=14% Similarity=0.204 Sum_probs=89.3
Q ss_pred CCChHHHHHHHHHHHHHHhhCCcch-------------hhHHHHHHH-hhcCCChhHHHHHHHHHHHhhhhCchhhHHHH
Q 002083 156 HSKEAVRRKAIMALHRFYQKSPSSV-------------QHLVSNFRK-RLCDNDPGVMGATLCPLFDLITVDVNSYKDLV 221 (969)
Q Consensus 156 d~~pyVRKkA~lal~kiy~~~Pe~v-------------~~l~~~l~~-lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv 221 (969)
|...-||..|+.|+....+.-|.-+ .---+.+.. -|.|.++-..+.|+.++..+... .+.
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~g-sk~----- 80 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEG-SKQ----- 80 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHh-hHH-----
Confidence 4455688888888877665443211 101122222 25788888888887776655422 111
Q ss_pred HHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHH
Q 002083 222 ISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCV 301 (969)
Q Consensus 222 ~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I 301 (969)
+|.+.. ..-|.. -.||.-.-.-.+ .+++.+|..+|.+.. +.-++-+|+||+
T Consensus 81 -----fls~a~-~~~~~~------ftpf~v~~a~si------------~~~~r~l~~~l~~e~-----~~~~~tq~~kcl 131 (728)
T KOG4535|consen 81 -----FLSVAE-DTSDHA------FTPFSVMIACSI------------RELHRCLLLALVAES-----SSQTVTQIIKCL 131 (728)
T ss_pred -----HHHHHh-ccCCcC------CCchHHHHHHHH------------HHHHHHHHHHHHHhc-----CchhHHHHHHHH
Confidence 111111 011111 146653222222 233455555555431 236889999998
Q ss_pred HhcCCC-------HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC
Q 002083 302 SSIYAN-------PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS 344 (969)
Q Consensus 302 ~~l~~~-------~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~ 344 (969)
..+-.+ -.++....+.+..++.++|+|++.-+|..+..|+..+
T Consensus 132 a~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 132 ANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 776432 1344567788999999999999999999999998776
No 244
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=51.85 E-value=1.4e+02 Score=28.69 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhC---hhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCC-cHHH
Q 002083 311 IESAADVIARFLK-SDSHNLKYMGIDALGRLIKTS---PEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSS-NVEV 385 (969)
Q Consensus 311 l~~ai~~L~~fL~-s~d~NlrYvaL~~L~~I~~~~---P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~-Nv~~ 385 (969)
+......+.+.|. ++.+++|.-++-.+..++..- ++++..-...++......+. .+.+|-.|..++..+ +...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 3344556677777 667899888888888887654 56776666666665555433 678888888888887 7776
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcC
Q 002083 386 IVDRMIDYMISINDNHYKTEIASRCVELAEQFA 418 (969)
Q Consensus 386 IV~eLl~yl~~~~D~~~k~eli~~I~~laekya 418 (969)
+=++..+++....+ +...+.+++++|.
T Consensus 82 lp~~~~~~l~~~~~------l~~~L~~l~~~~~ 108 (121)
T PF12397_consen 82 LPRKVFKALLKLPD------LIELLSELSEKYD 108 (121)
T ss_pred CCHHHHHHHHcCcc------HHHHHHHHHhcCC
Confidence 66666666655322 4555566666653
No 245
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=51.65 E-value=4.4e+02 Score=30.49 Aligned_cols=84 Identities=14% Similarity=0.284 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhH--H------HHhHHhhccccCCCchHHHHHHHHHhhc-ccCCCcH
Q 002083 313 SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEI--A------EQHQLAVIDCLEDPDDTLKRKTFELLYK-MTKSSNV 383 (969)
Q Consensus 313 ~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l--~------~~h~~~I~~cL~D~D~sIR~kaLdLL~~-L~n~~Nv 383 (969)
.....+..+|.|++.-.|--+|+.|..|.....++ . ..+...++..|+|+...|+-.|..+.-- ++|++.-
T Consensus 209 ~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~ 288 (335)
T PF08569_consen 209 RFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKP 288 (335)
T ss_dssp HHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-B
T ss_pred HHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCC
Confidence 45567777888877778888888888887544332 2 2355678889999999999999988654 5788776
Q ss_pred HHHHH-------HHHHHHhh
Q 002083 384 EVIVD-------RMIDYMIS 396 (969)
Q Consensus 384 ~~IV~-------eLl~yl~~ 396 (969)
..|++ +|++|+.+
T Consensus 289 ~~I~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 289 PPIVDILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHHHHHHHTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 66665 44556653
No 246
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=50.93 E-value=28 Score=26.80 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFY 173 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy 173 (969)
.++.+.++|.+.++-||+.|+-|+..+-
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5678889999999999999999988764
No 247
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=50.82 E-value=3.4e+02 Score=28.96 Aligned_cols=136 Identities=11% Similarity=0.007 Sum_probs=77.3
Q ss_pred HHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCC
Q 002083 78 AVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHS 157 (969)
Q Consensus 78 vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~ 157 (969)
+-.+..++-.+.+-++-..+......-.+..+-.+-.+..+. +.=..+=++|-+.++.+... -+.+.+.+.+...+.
T Consensus 51 ~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~-~~Wd~vD~~~~~i~g~~~~~--~~~~~~~l~~W~~s~ 127 (208)
T cd07064 51 VLELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTK-SWWDTVDSLAKVVGGILLAD--YPEFEPVMDEWSTDE 127 (208)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC-chHHHHHHHHHHHhHHHHhC--ChhHHHHHHHHHcCC
Confidence 334667766666666665555443221111111111122221 11122333444444432111 122346677788899
Q ss_pred ChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH
Q 002083 158 KEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK 218 (969)
Q Consensus 158 ~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~ 218 (969)
+.++|+.|+++..+.-+. .+ ...+...+..++.|++-.|.-+.--+|-++.+.+++...
T Consensus 128 ~~W~rR~ai~~~l~~~~~-~~-~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~ 186 (208)
T cd07064 128 NFWLRRTAILHQLKYKEK-TD-TDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVR 186 (208)
T ss_pred cHHHHHHHHHHHHHHHHc-cC-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHH
Confidence 999999999987774443 33 344556666778888888887777788899988886533
No 248
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=50.67 E-value=4.3e+02 Score=30.11 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcccccchHhhHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhC-CcchhhHHHHHHHhhcCCChhHHHHHH
Q 002083 126 IVCAALNAVCKLINEETIPAVLPQVVELLG-HSKEAVRRKAIMALHRFYQKS-PSSVQHLVSNFRKRLCDNDPGVMGATL 203 (969)
Q Consensus 126 vralALr~Ls~I~~~el~~~l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~~-Pe~v~~l~~~l~~lL~D~D~~Vv~aAl 203 (969)
.|.+..+.|+.+....+...+...+..++. ..++-....++-|+.+-+... .+.-+.+++.|.+-+.|+.+.|...-+
T Consensus 3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~ 82 (339)
T PF12074_consen 3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWL 82 (339)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHH
Confidence 345555566655554566666666666664 577777777777777766655 444456777777788887777666555
Q ss_pred HHHHHhhh----hC-chhhHHHHHHHHHHHHHHHhccC
Q 002083 204 CPLFDLIT----VD-VNSYKDLVISFVSILKQVAERRL 236 (969)
Q Consensus 204 ~~L~ei~~----~~-p~~~~~Lv~~lv~iLk~l~~~~l 236 (969)
..+.+++. .. ......+.|.|++++++...+-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~ 120 (339)
T PF12074_consen 83 LCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPL 120 (339)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55555553 22 23345566777777776655443
No 249
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=50.46 E-value=4.3e+02 Score=33.36 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=39.9
Q ss_pred HHHHHHhc-CCChhHHHHHHHHHHHHHhh-ChhHHHHhH-HhhccccCCCchHHHHHHHHHhhc
Q 002083 316 DVIARFLK-SDSHNLKYMGIDALGRLIKT-SPEIAEQHQ-LAVIDCLEDPDDTLKRKTFELLYK 376 (969)
Q Consensus 316 ~~L~~fL~-s~d~NlrYvaL~~L~~I~~~-~P~l~~~h~-~~I~~cL~D~D~sIR~kaLdLL~~ 376 (969)
-.|...++ +..-.+..+.++.+-.|.+. +++-+.+|. ..++.|++|.|..|..++|.++-.
T Consensus 352 p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lpt 415 (700)
T KOG2137|consen 352 PALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPT 415 (700)
T ss_pred HHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhH
Confidence 33444444 33345666777777767654 455555554 567778999999999998877653
No 250
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=49.93 E-value=2.4e+02 Score=27.46 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhCchh
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDN-DPGVMGATLCPLFDLITVDVNS 216 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~-D~~Vv~aAl~~L~ei~~~~p~~ 216 (969)
+...|.+..++..--..-|-+-.+...-...|+.+..++..+.+.|.|. +..|+.=+|.+|+-++.+.+..
T Consensus 3 ~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~ 74 (127)
T smart00273 3 LEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPR 74 (127)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHH
Confidence 3445677777655445555555555555566677888888888888877 8889999999998888776643
No 251
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=46.77 E-value=34 Score=33.68 Aligned_cols=46 Identities=11% Similarity=0.222 Sum_probs=32.3
Q ss_pred HHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCC
Q 002083 336 ALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSS 381 (969)
Q Consensus 336 ~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~ 381 (969)
-|..+...++.-+.+-...++..|++.++.||.|+|.+|-.+|...
T Consensus 24 Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 24 EIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 3444444555666665667778899989999999998776666554
No 252
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=46.11 E-value=4.3e+02 Score=28.85 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=96.7
Q ss_pred chhHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHhCCCCCchHH--HHHHHHHHHHHHHcCC--CCcchHHHHHHhhcC
Q 002083 10 SKEFLDLVKSIGEARSK-AEEDRIVLNEIETLKRRISEPDIPKRK--MKEYIIRLVYVEMLGH--DASFGYIHAVKMTHD 84 (969)
Q Consensus 10 sk~l~dlIk~Ir~~ks~-~eE~~~I~~ElaeiR~~f~~~~~~~~~--~ke~l~KLiyl~mlG~--Dvsf~~~~vIkl~sS 84 (969)
.-.+-.++++|++-..+ +.+.++-..|+..|++-+.....+... .-......+--.+..- +.-|--+++++++.-
T Consensus 13 ~~n~~~i~~KL~efn~~~~~~~~l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l 92 (268)
T PF08324_consen 13 QANLDKILKKLKEFNEKLQKELKLSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLSWPPESRFPALDLLRLAAL 92 (268)
T ss_dssp ---HHHHHHHHHHHHTTSHCCT-S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-CCC-HHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCCccchhHHhHHHHHHh
Confidence 34566777888766433 345566677777888777654332110 0112222222223333 445667788887654
Q ss_pred CCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHh---------hHHHHHHHhcC
Q 002083 85 DNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIP---------AVLPQVVELLG 155 (969)
Q Consensus 85 ~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~---------~l~~~V~~lL~ 155 (969)
..-. ...+...+..+.-.+...+..-..+.++-.+-++||++||+.....-. .++..+..+..
T Consensus 93 ~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (268)
T PF08324_consen 93 HPPA--------SDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLS 164 (268)
T ss_dssp CHCH--------HHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCT
T ss_pred CccH--------HHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhh
Confidence 2221 111222222223334444444444578889999999999986654322 22223333333
Q ss_pred CC---ChHHHHHHHHHHHHHHh---hCC---cchhhHHHHHHHh-hcC-CChhHHHHHHHHHHHhh
Q 002083 156 HS---KEAVRRKAIMALHRFYQ---KSP---SSVQHLVSNFRKR-LCD-NDPGVMGATLCPLFDLI 210 (969)
Q Consensus 156 d~---~pyVRKkA~lal~kiy~---~~P---e~v~~l~~~l~~l-L~D-~D~~Vv~aAl~~L~ei~ 210 (969)
.. +..+|-.++..++.+-- ..+ +....++..+.+. ... .|+-++.-++.+|-.++
T Consensus 165 ~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 165 SLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 33 67788888777776422 222 2222345555552 222 46666666666666555
No 253
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=45.98 E-value=3.3e+02 Score=33.29 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=17.8
Q ss_pred HHHHhhcccCCCcHHHHHHHHHH
Q 002083 370 TFELLYKMTKSSNVEVIVDRMID 392 (969)
Q Consensus 370 aLdLL~~L~n~~Nv~~IV~eLl~ 392 (969)
.+.=|..=+|.+|++.|+.||+.
T Consensus 167 sInglInkvn~sNi~~ii~eLfq 189 (739)
T KOG2140|consen 167 SINGLINKVNASNIQEIIRELFQ 189 (739)
T ss_pred HhHHHHhhhhHHHHHHHHHHHHH
Confidence 34555666899999999999974
No 254
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=45.33 E-value=5.4e+02 Score=29.75 Aligned_cols=172 Identities=12% Similarity=0.101 Sum_probs=79.6
Q ss_pred CchhHHHHHHHHhccCChH-----HH----HHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHHHHcCCCCcchHHHH
Q 002083 9 QSKEFLDLVKSIGEARSKA-----EE----DRIVLNEIETLKRRISEPD-IPKRKMKEYIIRLVYVEMLGHDASFGYIHA 78 (969)
Q Consensus 9 ~sk~l~dlIk~Ir~~ks~~-----eE----~~~I~~ElaeiR~~f~~~~-~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~v 78 (969)
-+|+-.|+||.++++=.+- .. ..-|.+-+..+|.-+-..+ .+.. .+.+. -++-++.-.| ....+
T Consensus 8 ~~KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~--~e~v~-qLa~Ei~~~d---ll~~L 81 (335)
T PF08569_consen 8 KPKTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPN--PEQVA-QLAQEIYRSD---LLYLL 81 (335)
T ss_dssp ----HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS------HHHHH-HHHHHHHHHT---HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC--HHHHH-HHHHHHHHhC---HHHHH
Confidence 4577888888887662111 11 1225566666777775432 2111 12222 2222222222 23445
Q ss_pred HHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCcc-HHHHHH------HHHH-HHcccccchHhhHHHHH
Q 002083 79 VKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDN-YLIVCA------ALNA-VCKLINEETIPAVLPQV 150 (969)
Q Consensus 79 Ikl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N-~~vral------ALr~-Ls~I~~~el~~~l~~~V 150 (969)
|..+..=+++.||-+.... .|.++....+.. |.+--+ .|.. +....+++++-..-.-+
T Consensus 82 i~~L~~L~fEsrKdv~~if--------------~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 82 IRNLPKLDFESRKDVAQIF--------------SNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHTGGGS-HHHHHHHHHHH--------------HHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHhhhCCCcccccHHHHH--------------HHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHH
Confidence 6666666676666444444 444444444433 221111 1111 12334566655555555
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch
Q 002083 151 VELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN 215 (969)
Q Consensus 151 ~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~ 215 (969)
..|+.|. ++.++... ++.+..++ +.+...+-.|.+-|+..|.+++..++.
T Consensus 148 Rec~k~e----------~l~~~iL~-~~~f~~ff----~~~~~~~Fdiasdaf~t~~~llt~hk~ 197 (335)
T PF08569_consen 148 RECIKHE----------SLAKIILY-SECFWKFF----KYVQLPNFDIASDAFSTFKELLTRHKK 197 (335)
T ss_dssp HHHTTSH----------HHHHHHHT-SGGGGGHH----HHTTSSSHHHHHHHHHHHHHHHHSSHH
T ss_pred HHHHhhH----------HHHHHHhC-cHHHHHHH----HHhcCCccHhHHHHHHHHHHHHhccHH
Confidence 6666553 23443333 33343333 345567778888888888888766553
No 255
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=44.99 E-value=81 Score=30.04 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHH---hhccc---------cCCCchHHHHHHHHHhhcc
Q 002083 311 IESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQL---AVIDC---------LEDPDDTLKRKTFELLYKM 377 (969)
Q Consensus 311 l~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~---~I~~c---------L~D~D~sIR~kaLdLL~~L 377 (969)
...++..|.+-|.+++++.+|-+|..|-.+++....-|..+.. ...++ -.+.+..||.++++++...
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3446677777778889999999999999999887554433211 11121 1345778999998887654
No 256
>PHA02939 hypothetical protein; Provisional
Probab=44.61 E-value=97 Score=30.15 Aligned_cols=103 Identities=15% Similarity=0.267 Sum_probs=53.9
Q ss_pred cCCCcHHHHHHHHHHHHhhcCChhhH----HHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhc
Q 002083 378 TKSSNVEVIVDRMIDYMISINDNHYK----TEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAE 453 (969)
Q Consensus 378 ~n~~Nv~~IV~eLl~yl~~~~D~~~k----~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~ 453 (969)
+|++.++.|..+|- |+.- .|+ +++......+++.-.|...|-.+++-+ ++.+.+|. +.+.+.+
T Consensus 13 vNEqdIQLItKKLA-YIAI----QFqKi~er~if~d~~~~~de~c~~~kwE~df~rD-------~ipe~iW~-vRkaV~~ 79 (144)
T PHA02939 13 VNEQDIQLITKKLA-YIAI----QFQKILERMIFSDFARCDDEGCPRSKWESDFLRD-------LIPEEIWY-VRKAVKE 79 (144)
T ss_pred cCHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHhhccccccchHhhHHHHHHH-------HhhHHHHH-HHHHHHH
Confidence 46666777777774 3321 222 233344455555556778999888655 56666665 3333332
Q ss_pred ccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccc
Q 002083 454 GFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEY 498 (969)
Q Consensus 454 ~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY 498 (969)
- -+.+.....|+++-..+-.+|+- .+..+.+.+-|++-|-
T Consensus 80 l---~DP~st~~qrEyae~~l~~lle~--~~r~f~~Ll~~ci~ek 119 (144)
T PHA02939 80 L---YDPESTDDQREYAEHRLKGLLEL--LERNFNQLLEFCIDEK 119 (144)
T ss_pred H---hCCccchhHHHHHHhhHHHHHHH--HHHHHHHHHHHHhhHH
Confidence 1 12222334566665555554431 1223444555777654
No 257
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=43.42 E-value=7.7e+02 Score=32.33 Aligned_cols=162 Identities=17% Similarity=0.211 Sum_probs=94.3
Q ss_pred chhHHHHHHHHhhhcc-CchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHH
Q 002083 88 VLKRTGYLAVTLFLNE-DHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAI 166 (969)
Q Consensus 88 ~~KRlgYLals~~~~~-~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~ 166 (969)
..|++--+++..+... +++..-|+...++ +..|-..+-.||++|.+...+ -|..|+
T Consensus 670 ~~R~l~n~~l~~l~~~~~~~~~~~~~~~~~---~a~~mtd~~~al~~l~~~~~~--------------------~~~~~l 726 (863)
T TIGR02414 670 GRRALRNACLSYLSAADDAEIRNLALEQFK---SADNMTDRLAALSALVHFESD--------------------FRERAL 726 (863)
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHH---hCCCHHHHHHHHHHHhcCCCh--------------------hHHHHH
Confidence 3455555555555442 3444445555555 346777777888777654332 445555
Q ss_pred HHHHHHHhhCCcchh------------hHHHHHHHhhcC-----CChhHHHHHHHHHHHhhh-----hCchhhHHHHHHH
Q 002083 167 MALHRFYQKSPSSVQ------------HLVSNFRKRLCD-----NDPGVMGATLCPLFDLIT-----VDVNSYKDLVISF 224 (969)
Q Consensus 167 lal~kiy~~~Pe~v~------------~l~~~l~~lL~D-----~D~~Vv~aAl~~L~ei~~-----~~p~~~~~Lv~~l 224 (969)
...+.-++.+|-.+. +.++.+++++.. ++|.-+.+-+..|..-.+ .+...|+-+...+
T Consensus 727 ~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i 806 (863)
T TIGR02414 727 AAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQI 806 (863)
T ss_pred HHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHH
Confidence 555555555555443 345666666643 467666666655532111 1223343333222
Q ss_pred HHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCC
Q 002083 225 VSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSN 288 (969)
Q Consensus 225 v~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~N 288 (969)
+.+ - -.||-.-.++++-|..+.+-|+.....|...|..++.....++|
T Consensus 807 ~~l----d------------~~Np~~aarl~~~~~~w~~~~~~r~~~m~~~l~~i~~~~~ls~d 854 (863)
T TIGR02414 807 IAI----D------------RFNPQVAARLLEPLTRWRKLDPKRQELMKAALERIAAEENLSKD 854 (863)
T ss_pred HHh----c------------CcCHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHhCcCCCcc
Confidence 222 1 13899999999999999999988888888888888775433433
No 258
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.19 E-value=6.9e+02 Score=30.38 Aligned_cols=357 Identities=12% Similarity=0.125 Sum_probs=158.8
Q ss_pred ChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHH--Hhhh
Q 002083 195 DPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQA--SENM 272 (969)
Q Consensus 195 D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~--se~l 272 (969)
....+..|+.+|+.+..+-.-..+---.++|.+|-..++. .+-=+.+-++++|..+..-+... -++
T Consensus 276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr-----------~n~~Ll~lv~~FLkKLSIf~eNK~~M~~- 343 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDR-----------SNSSLLTLVIKFLKKLSIFDENKIVMEQ- 343 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcc-----------cchHHHHHHHHHHHHhhhhccchHHHHh-
Confidence 3345566777777665432211111113455555444332 12234456667777766543221 111
Q ss_pred HHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhC---
Q 002083 273 YTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIES-----AADVIARFLKSDSHNLKYMGIDALGRLIKTS--- 344 (969)
Q Consensus 273 ~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~-----ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~--- 344 (969)
.+++.++++--... ..-++-.++++++++.-+..++.. ....+..||.+. +-+-++++.|+.|...+
T Consensus 344 ~~iveKL~klfp~~---h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d--~~~~iA~~~lYh~S~dD~~K 418 (791)
T KOG1222|consen 344 NGIVEKLLKLFPIQ---HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD--TKHGIALNMLYHLSCDDDAK 418 (791)
T ss_pred ccHHHHHHHhcCCC---CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc--ccchhhhhhhhhhccCcHHH
Confidence 13444443321111 124556677788877655444332 234567777653 55667888888887543
Q ss_pred -----hhHHHHhHHhhccccCCCchHHHHHHHHHhhcc-cCCCcHHHHHH-----HHHHHHhhcCChhhHHHHHHHHHHH
Q 002083 345 -----PEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKM-TKSSNVEVIVD-----RMIDYMISINDNHYKTEIASRCVEL 413 (969)
Q Consensus 345 -----P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L-~n~~Nv~~IV~-----eLl~yl~~~~D~~~k~eli~~I~~l 413 (969)
.+.+..--..++.|.... ..+-. +.+-..+ .|..|++.|++ -|++-.....|. +--++++. +
T Consensus 419 ~MfayTdci~~lmk~v~~~~~~~-vdl~l--ia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~-lLmK~vRn---i 491 (791)
T KOG1222|consen 419 AMFAYTDCIKLLMKDVLSGTGSE-VDLAL--IALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL-LLMKVVRN---I 491 (791)
T ss_pred HHHHHHHHHHHHHHHHHhcCCce-ecHHH--HHHHHHHHhccccceEEecCcchHHHHHHHhcccch-HHHHHHHH---h
Confidence 233344445677777553 22222 2222333 36777776643 233333222232 22223332 2
Q ss_pred hhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccch--hHHHH-HHHHHHHHhCCCCC-chhHHH
Q 002083 414 AEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADS--QLRSS-AVESYLRIIGEPKL-PSVFLQ 489 (969)
Q Consensus 414 aekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p--~lr~~-av~~l~~lL~d~~~-~e~l~~ 489 (969)
.+.-.+....||+.+-++.......-.++..-.++-.+++--..+ .+- -++.+ .|.-+-+.|..+.. .+..++
T Consensus 492 SqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d---ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~ 568 (791)
T KOG1222|consen 492 SQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD---LDWAKILQSENLVPWMKTQLQPGADEDDLVLQ 568 (791)
T ss_pred hhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC---CCHHHHHhhccccHHHHHhhcCCccchhhhhH
Confidence 222233445556555555433322222332222222232210000 000 00110 11111122322222 222344
Q ss_pred HHHHHhccccCCCC---CCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcc---ccCCCcHHHHHHHHHHh
Q 002083 490 VICWVLGEYGTADG---KVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAG---RKVDMLPECQSLIEELS 563 (969)
Q Consensus 490 ~i~WILGEY~~~~~---~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~---~~~~~~~~~~~lL~~~l 563 (969)
+ +-.+|-.+.... ...+..++..|+.+++...++++.-.+||--+..+..+..... ...... ..|-.+.
T Consensus 569 ~-vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~----AylIDLM 643 (791)
T KOG1222|consen 569 I-VIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALG----AYLIDLM 643 (791)
T ss_pred H-HHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccch----HHHHHHH
Confidence 4 344676654321 1233446666777776666666665666655555444432110 000011 1222344
Q ss_pred cCCChhHHhHHHHHHHHhcC
Q 002083 564 ASHSTDLQQRAYELEAVTGL 583 (969)
Q Consensus 564 ~s~d~EVQqRA~Ey~~LL~~ 583 (969)
.+.+-|+|.-|--.+-++..
T Consensus 644 HDkN~eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 644 HDKNAEIRKVCDNALDIIAE 663 (791)
T ss_pred hcccHHHHHHHHHHHHHHHH
Confidence 57788888887776666643
No 259
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=42.12 E-value=1.8e+02 Score=29.57 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=65.9
Q ss_pred CCChHHHHHHHHHHHHHHhhCCcchhhHH-HHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHHHHHHHHH
Q 002083 156 HSKEAVRRKAIMALHRFYQKSPSSVQHLV-SNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFVSILKQVA 232 (969)
Q Consensus 156 d~~pyVRKkA~lal~kiy~~~Pe~v~~l~-~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv~iLk~l~ 232 (969)
...+-||-.|.+++.|++...++...+.+ +.+..++.+.+..-...+++++..+.+--|+....++ ..+.+++...+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 46778999999999999877776665543 4444555443333344456666666665554333322 22334333333
Q ss_pred hccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH---HHhhhHHHHHHhHh
Q 002083 233 ERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ---ASENMYTVVGDIFR 281 (969)
Q Consensus 233 ~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~---~se~l~~iL~~iL~ 281 (969)
.+ ...++=.|..++++|..=+..... ..+...+.|.+.++
T Consensus 96 ~~---------~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 96 SR---------KSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp H----------CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred hc---------ccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 21 123677888888888776553321 12334456666554
No 260
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=41.99 E-value=4.9e+02 Score=35.10 Aligned_cols=108 Identities=16% Similarity=0.314 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHH----HHhHHhhccccCCCchH
Q 002083 292 AVLYECICCVSSI--YANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIA----EQHQLAVIDCLEDPDDT 365 (969)
Q Consensus 292 AVlyEaik~I~~l--~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~----~~h~~~I~~cL~D~D~s 365 (969)
.|.-.|+.++..+ ..+.+++....+.+..++....-++|.-++..+...+.+.-+.. ..-...+++.|+|.|..
T Consensus 144 pVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~dd 223 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDD 223 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH
Confidence 4555566665443 23456666677777777776666777666666665554443332 23345677889999999
Q ss_pred HHHHHHHHhhcccCCC------cHHHHHHHHHHHHhhcCC
Q 002083 366 LKRKTFELLYKMTKSS------NVEVIVDRMIDYMISIND 399 (969)
Q Consensus 366 IR~kaLdLL~~L~n~~------Nv~~IV~eLl~yl~~~~D 399 (969)
++..|-..|...+... .+..|+..+..++.+..|
T Consensus 224 v~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd 263 (1549)
T KOG0392|consen 224 VRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD 263 (1549)
T ss_pred HHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh
Confidence 9999998888776544 344556666666655433
No 261
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=41.54 E-value=6e+02 Score=29.36 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=76.8
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHh
Q 002083 182 HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 182 ~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l 261 (969)
.++.++.+.+.+.+......|+.. +..++. ..+|+|.|+..+.+-+...+.. +=+....+++++..+
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~s----L~tD~g-l~~LlPyf~~fI~~~v~~n~~~--------nl~~L~~lm~~v~AL 244 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQS----LRTDPG-LQQLLPYFVRFIAEGVTVNLDQ--------NLALLIYLMRMVRAL 244 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH----hccCCC-chhhhhHHHHHHHHHHHhhhcc--------cHHHHHHHHHHHHHH
Confidence 356777777766666555555432 344543 5789999999988765432211 446777788888776
Q ss_pred CCC-----ChHHHhhhHHHHHHhHhccCCCC---CCCchHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcC-CCh
Q 002083 262 GSG-----DKQASENMYTVVGDIFRKCDSSS---NIGNAVLYECICCVSSIY-----ANPKLIESAADVIARFLKS-DSH 327 (969)
Q Consensus 262 ~~~-----d~~~se~l~~iL~~iL~~~~~~~---Ni~~AVlyEaik~I~~l~-----~~~~ll~~ai~~L~~fL~s-~d~ 327 (969)
... ++..-..|-.+|..++.+.-... +-..++.-.+++++..+. ..+.+..++...+.+.+.+ ..+
T Consensus 245 l~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~ 324 (343)
T cd08050 245 LDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKP 324 (343)
T ss_pred hcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCC
Confidence 432 22222222222322222211111 112355555656554431 2345666666555554443 222
Q ss_pred -hHHHHHHHHHHHHH
Q 002083 328 -NLKYMGIDALGRLI 341 (969)
Q Consensus 328 -NlrYvaL~~L~~I~ 341 (969)
-..|-++..|..+.
T Consensus 325 ~~~~YGAi~GL~~lG 339 (343)
T cd08050 325 LTTHYGAIVGLSALG 339 (343)
T ss_pred cchhhHHHHHHHHhC
Confidence 33677777766554
No 262
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=41.51 E-value=8.4e+02 Score=31.64 Aligned_cols=76 Identities=9% Similarity=0.048 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHH
Q 002083 364 DTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKV 443 (969)
Q Consensus 364 ~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev 443 (969)
.+|+.|.+.+=|+-.+. +.|++.|.+.+.. ....+-.+.+..|..+++- +..-.+.++.+.+..++..|..+.
T Consensus 164 ~TIrSRCq~f~Fk~Ls~---eeIv~~L~~Il~~-EgI~id~eAL~lIA~~A~G---smRdALsLLdQAia~~~~~It~~~ 236 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPA---GHIVSHLERILGE-ERIAFEPQALRLLARAAQG---SMRDALSLTDQAIAYSANEVTETA 236 (830)
T ss_pred chhhhheEEEecCCcCH---HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCC---CHHHHHHHHHHHHHhccCCcCHHH
Confidence 46777776555544444 3444444444432 2334556777777777654 445556666666666655666654
Q ss_pred HHH
Q 002083 444 AHN 446 (969)
Q Consensus 444 ~~~ 446 (969)
+..
T Consensus 237 V~~ 239 (830)
T PRK07003 237 VSG 239 (830)
T ss_pred HHH
Confidence 443
No 263
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=39.91 E-value=5.5e+02 Score=35.35 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=31.0
Q ss_pred hHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhh
Q 002083 351 HQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 351 h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~ 396 (969)
|...++..|++.+..-+.+.+++++..+.-..-..+|-.|++++..
T Consensus 929 ~~e~~i~~lr~~~~~d~~kVv~~i~SHs~i~~KN~Lv~~ll~~l~~ 974 (2196)
T KOG0368|consen 929 HYEDVILRLREENKKDLKKVVDIILSHSQIKSKNKLVLALLDQLKP 974 (2196)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHcchhhhhhhHHHHHHHHHhcC
Confidence 4455555666666666778888888776665556667777777764
No 264
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.75 E-value=1.7e+03 Score=33.85 Aligned_cols=268 Identities=19% Similarity=0.157 Sum_probs=130.6
Q ss_pred HHHhhcCCCcchhHHHHHHHHhhhccCchHHHH-----HHHHH---HhhhcCccHH----HHHHHHHHHH-----ccc--
Q 002083 78 AVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIIL-----IVNTI---QKDLKSDNYL----IVCAALNAVC-----KLI-- 138 (969)
Q Consensus 78 vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL-----~iNtL---qKDL~s~N~~----vralALr~Ls-----~I~-- 138 (969)
...++.++....|+-|..++..+....+.+.++ +.|.+ .||+.+..+- ..---|..|- .+.
T Consensus 1038 ~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~ 1117 (3550)
T KOG0889|consen 1038 LCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAE 1117 (3550)
T ss_pred HHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 455667777777777777776666655532221 22222 3454432211 1001111111 111
Q ss_pred --ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcC---------CChhHHHHHHHHHH
Q 002083 139 --NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCD---------NDPGVMGATLCPLF 207 (969)
Q Consensus 139 --~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D---------~D~~Vv~aAl~~L~ 207 (969)
....++.+...+..-|.|+++.||+.+.-+|..+.....-.+.++.+.++++|.- ..-.++.-.+.++.
T Consensus 1118 ~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~ 1197 (3550)
T KOG0889|consen 1118 EERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAIT 1197 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHH
Confidence 1133456667777888899999999999999999998865566777777776611 11111222222222
Q ss_pred HhhhhCchh---hHHHHH--HHHHHHHHHHh---ccCCCCcCCCCCC-ChhHHHHHHHHHHHhCCCC----hH---HHhh
Q 002083 208 DLITVDVNS---YKDLVI--SFVSILKQVAE---RRLPKSYDYHQMP-APFIQIRLLKILALLGSGD----KQ---ASEN 271 (969)
Q Consensus 208 ei~~~~p~~---~~~Lv~--~lv~iLk~l~~---~~lp~~y~y~~v~-~PWlQikLLklL~~l~~~d----~~---~se~ 271 (969)
......|.. ...++. .+..-|....+ -.+-+...|...+ --++.+..+++|....... ++ ..++
T Consensus 1198 fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~k 1277 (3550)
T KOG0889|consen 1198 FCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREK 1277 (3550)
T ss_pred HHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhH
Confidence 222222321 112221 11111111100 0012222332222 2345566677775533221 11 2244
Q ss_pred hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHH
Q 002083 272 MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA--NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAE 349 (969)
Q Consensus 272 l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~--~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~ 349 (969)
+..++...+...... -..+.++|.+++..... ..++++....+|..-+... .|+---++..+..+...-++.|.
T Consensus 1278 ii~v~fk~l~~~~~E---i~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~-~~lsv~~l~~ls~l~~ll~~~f~ 1353 (3550)
T KOG0889|consen 1278 IIAVFFKSLYKRSSE---LIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDH-NNLSVPGLEGLSRLLRLLINYFK 1353 (3550)
T ss_pred HHHHHHHHHcCChHH---HHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555555432111 12466777777765432 2456666665665555432 45666667777777666666654
No 265
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=38.62 E-value=1.6e+02 Score=35.80 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=83.5
Q ss_pred cCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCc--cHHHHHHHHHHH---Hc---ccccchHhhHHHHHH---
Q 002083 83 HDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSD--NYLIVCAALNAV---CK---LINEETIPAVLPQVV--- 151 (969)
Q Consensus 83 sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~--N~~vralALr~L---s~---I~~~el~~~l~~~V~--- 151 (969)
.+..+..|-+.||.=+..+-...+-.+ ..+.-.|.++ |.-.+.+++.++ .. -..+.++..+.+.|.
T Consensus 295 a~~~lq~kIL~~L~kS~~Aa~~~~~~~---~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 295 ASPRLQEKILSLLSKSVIAATSFPNIL---QIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred CCHHHHHHHHHHHHHhHHHHhCCccHH---HHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Confidence 566788899999988877765544332 2334467777 778888999988 33 234444444444443
Q ss_pred -HhcC--------CCChHHHHHHHHHHHHHHhhCCcchh---hHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002083 152 -ELLG--------HSKEAVRRKAIMALHRFYQKSPSSVQ---HLVSNFRKRLCDNDPGVMGATLCPLFD 208 (969)
Q Consensus 152 -~lL~--------d~~pyVRKkA~lal~kiy~~~Pe~v~---~l~~~l~~lL~D~D~~Vv~aAl~~L~e 208 (969)
+.+. ....-.|..|..|+..+.+..|+.+. .++..+-+.|.+.++.|..+.--+|..
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALss 440 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSS 440 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 4442 23567999999999999999999984 356666677778888877665444433
No 266
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=38.22 E-value=1.4e+03 Score=32.54 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=61.6
Q ss_pred HHHHHHHhhhcCccHHHHHHHHHHHHccc-----ccc-----hHhhHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhCCc
Q 002083 110 LIVNTIQKDLKSDNYLIVCAALNAVCKLI-----NEE-----TIPAVLPQVVELLG-HSKEAVRRKAIMALHRFYQKSPS 178 (969)
Q Consensus 110 L~iNtLqKDL~s~N~~vralALr~Ls~I~-----~~e-----l~~~l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~~Pe 178 (969)
.+.+.+.+=-.++|..++..|+..|-.+. .+| .-..++.....++. ..+.-||...+-|+..|.+...+
T Consensus 1137 ~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~ 1216 (1780)
T PLN03076 1137 VLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN 1216 (1780)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 34444555444556656666666443321 222 22345555555554 45778999999999999998877
Q ss_pred chhh----HHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002083 179 SVQH----LVSNFRKRLCDNDPGVMGATLCPLFDLIT 211 (969)
Q Consensus 179 ~v~~----l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~ 211 (969)
.++. ++..|.....|+++.++..|+-.+..|+.
T Consensus 1217 nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1217 NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 7763 34444444567777777766665554443
No 267
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=38.14 E-value=1.6e+03 Score=33.03 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=53.8
Q ss_pred HHHHHHHHHccccc--chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc--------c--hhhHHHHHHH-hhcC
Q 002083 127 VCAALNAVCKLINE--ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPS--------S--VQHLVSNFRK-RLCD 193 (969)
Q Consensus 127 ralALr~Ls~I~~~--el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe--------~--v~~l~~~l~~-lL~D 193 (969)
.-+|+.++.++... .+...+-..+...+.+-++-+||.|++++..+++..+- . +...+..+.. .+.|
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~ 540 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIAD 540 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccC
Confidence 44688888887655 33344444567777889999999999999999987765 2 3333333333 2578
Q ss_pred CChhHHHHHHHHH
Q 002083 194 NDPGVMGATLCPL 206 (969)
Q Consensus 194 ~D~~Vv~aAl~~L 206 (969)
.|+.++...+..+
T Consensus 541 ~~~~i~~~v~~~l 553 (2341)
T KOG0891|consen 541 TDPDIRIRVLSSL 553 (2341)
T ss_pred CCcchhhhHHhhh
Confidence 8888776655433
No 268
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=36.91 E-value=1.9e+02 Score=27.82 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=47.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh
Q 002083 149 QVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 149 ~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
.|.+..++.....+.|=+-.++..-...+..+..++..|.+.+.++|..|+.=++.+++.++++....+
T Consensus 4 aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~~~ 72 (117)
T cd03564 4 AVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPSF 72 (117)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCHHH
Confidence 456666654433333333334433344467788888999999989999999999999998887765443
No 269
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=36.58 E-value=3.3e+02 Score=27.82 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=26.9
Q ss_pred HHHHHHhcC-CChhHHHHHHHHHHHHHhhChhHHH
Q 002083 316 DVIARFLKS-DSHNLKYMGIDALGRLIKTSPEIAE 349 (969)
Q Consensus 316 ~~L~~fL~s-~d~NlrYvaL~~L~~I~~~~P~l~~ 349 (969)
+.|.++|.+ .+.++|.-+++.|..|...+|...+
T Consensus 13 ~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 13 DILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 456666665 3589999999999999999987654
No 270
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=36.25 E-value=3.3e+02 Score=27.65 Aligned_cols=58 Identities=24% Similarity=0.212 Sum_probs=42.3
Q ss_pred HhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 002083 373 LLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVF 432 (969)
Q Consensus 373 LL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll 432 (969)
+|-++ ++.|++.++++|.+..... +......++..|...|..-+.....|...+..+-
T Consensus 7 ~lnkl-t~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~ 64 (209)
T PF02854_consen 7 ILNKL-TPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALN 64 (209)
T ss_dssp HHHHC-SSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred HHHHC-CHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHh
Confidence 34444 4999999999999988763 6788899999998888765545556665554443
No 271
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=35.75 E-value=4.3e+02 Score=33.52 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=69.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCC
Q 002083 184 VSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGS 263 (969)
Q Consensus 184 ~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~ 263 (969)
+.++..+|...|..|+--+-.+|.+.+..+.+.| +++-|-+ |+--.+ -..++.+|...
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~------l~~~l~~-----------y~~~t~---s~~~~~il~~~-- 63 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREPW------LVNGLVD-----------YYLSTN---SQRALEILVGV-- 63 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchHH------HHHHHHH-----------HHhhcC---cHHHHHHHHhc--
Confidence 4455566777777777776666666654433221 1111111 100000 12233444332
Q ss_pred CChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC--CHHHH---H-HHHHHHHHH-hcCCChhHHHHHHHH
Q 002083 264 GDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA--NPKLI---E-SAADVIARF-LKSDSHNLKYMGIDA 336 (969)
Q Consensus 264 ~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~--~~~ll---~-~ai~~L~~f-L~s~d~NlrYvaL~~ 336 (969)
.+|. .+.+++.|.+++.+. .-.++++.++.++-. .+.+. + ..+..|.+. ..+.+..+-..||.+
T Consensus 64 ~~P~-~K~~~~~l~~~~~~~--------~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~ 134 (668)
T PF04388_consen 64 QEPH-DKHLFDKLNDYFVKP--------SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLV 134 (668)
T ss_pred CCcc-HHHHHHHHHHHHcCc--------hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHH
Confidence 2221 245566666666643 233455555544311 11111 1 122333333 334556677777777
Q ss_pred HHHHHhhChhHHHHhHHhhc
Q 002083 337 LGRLIKTSPEIAEQHQLAVI 356 (969)
Q Consensus 337 L~~I~~~~P~l~~~h~~~I~ 356 (969)
|..|+-.-|..+.+|...+|
T Consensus 135 LimlLP~ip~~l~~~L~~Lf 154 (668)
T PF04388_consen 135 LIMLLPHIPSSLGPHLPDLF 154 (668)
T ss_pred HHHHhccccchhhHHHHHHH
Confidence 77777777777777777766
No 272
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.91 E-value=2.9e+02 Score=32.58 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=78.1
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhcccc----CCCchHHHHHHHHH----hhcccCCCcHHHHH
Q 002083 316 DVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCL----EDPDDTLKRKTFEL----LYKMTKSSNVEVIV 387 (969)
Q Consensus 316 ~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL----~D~D~sIR~kaLdL----L~~L~n~~Nv~~IV 387 (969)
.-|..-+...+.++|-=+|..|..+...+|....-|...++.++ -|.|-.+|.....+ ++.+|-+. ....+
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcchH
Confidence 34455566777899999999999999999999988888777765 46677777775544 55567666 56666
Q ss_pred HHHHHHHhhc---CChhhHHHHHHHHHHHhhhcCCchHHHH
Q 002083 388 DRMIDYMISI---NDNHYKTEIASRCVELAEQFAPSNHWFI 425 (969)
Q Consensus 388 ~eLl~yl~~~---~D~~~k~eli~~I~~laekyap~~~W~I 425 (969)
.-++.|+... .-++++.+...-...++++|+|...-+.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~ 180 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYA 180 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHH
Confidence 6666666521 2346777777777888888887654443
No 273
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=34.08 E-value=1.2e+03 Score=30.41 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=31.5
Q ss_pred ChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhcc--CCCCCCCchHHHHHHHHHH
Q 002083 247 APFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKC--DSSSNIGNAVLYECICCVS 302 (969)
Q Consensus 247 ~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~--~~~~Ni~~AVlyEaik~I~ 302 (969)
++=+.-.+.|+|-.+..++++..+.+.+....+++-. +...+....+..+|..-|.
T Consensus 242 ~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~ 299 (802)
T PF13764_consen 242 NPQILQALARILPFLTYGNEEKMDALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIA 299 (802)
T ss_pred CHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHhcChhhcccccCchHHHHHHHHHHHH
Confidence 4556667888888888877766565555555544321 2222222345566655443
No 274
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=33.47 E-value=9.3e+02 Score=29.05 Aligned_cols=134 Identities=22% Similarity=0.154 Sum_probs=68.6
Q ss_pred hhHHHHHHHHhccCChHHH-HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCC-----Ccc---hHHHHHHh
Q 002083 11 KEFLDLVKSIGEARSKAEE-DRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHD-----ASF---GYIHAVKM 81 (969)
Q Consensus 11 k~l~dlIk~Ir~~ks~~eE-~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~D-----vsf---~~~~vIkl 81 (969)
+-|+++|-+.+=..=+++| ..-+.+|..++|. +.+.=+-.| +.||.+|.-+.----. +|. ++..+.++
T Consensus 182 ~VFk~IIPgYkIRpL~e~Eq~~K~skev~~l~~-yeqsLl~~Y--~~yi~tl~~~~k~~S~~~~~Q~SL~~vA~~~~~el 258 (657)
T COG5117 182 KVFKAIIPGYKIRPLKEEEQMVKDSKEVLHLKD-YEQSLLRWY--TSYIKTLVDDVKDESTLDETQSSLYQVAYISLCEL 258 (657)
T ss_pred HHHHHhCccccccccchHHhhhhhHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHH
Confidence 4577777774433223444 2347888888873 333222122 2455555442110000 122 23344555
Q ss_pred hcCC---CcchhHHHHHHHHhhhcc-CchHHHHHHHHHHhhhcCccHH----HHHHHHHHHHcccccchHhhHHH
Q 002083 82 THDD---NLVLKRTGYLAVTLFLNE-DHDLIILIVNTIQKDLKSDNYL----IVCAALNAVCKLINEETIPAVLP 148 (969)
Q Consensus 82 ~sS~---~~~~KRlgYLals~~~~~-~~dlllL~iNtLqKDL~s~N~~----vralALr~Ls~I~~~el~~~l~~ 148 (969)
++.- |+..| +.-|++-..... ..-..+++||||+.-|...+.- +.---+.-|-.-+++.+.++|+.
T Consensus 259 i~~asHFN~~~k-vfsl~lR~i~~~t~rp~s~~ii~t~ks~leeD~~G~~sl~~~~i~~~l~k~rN~~vle~vld 332 (657)
T COG5117 259 IQHASHFNCTDK-VFSLVLRGILGTTKRPVSMLIIDTIKSKLEEDCTGKTSLVATVIDQMLDKERNPLVLEYVLD 332 (657)
T ss_pred HHHhhhcCcHHH-HHHHHHHHhhCCCCCchHHHHHHHHHHHhcccccCceeEEeehHHHHHHhhhCchhHHHHHh
Confidence 5542 44443 444555555554 3346789999999877765542 22223334445567777766654
No 275
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=32.91 E-value=7.2e+02 Score=27.58 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=31.2
Q ss_pred HHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCCh
Q 002083 188 RKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDK 266 (969)
Q Consensus 188 ~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~ 266 (969)
.+.+.|.+......|+++|-+... . .-+|.+++++++ +.+ .++.+-.-|+---+-++|...+.++.
T Consensus 48 ~e~~~~~~~~~~~~a~~LLaq~re--~----~A~~~li~l~~~------~~~-~~~~l~GD~~tE~l~~ilasv~~G~~ 113 (249)
T PF06685_consen 48 NELLDDEEYNLHFYALYLLAQFRE--E----RALPPLIRLFSQ------DDD-FLEDLFGDFITEDLPRILASVGDGDI 113 (249)
T ss_pred HHhccCcchHHHHHHHHHHHHHhh--h----hhHHHHHHHHcC------Ccc-hHHHHHcchhHhHHHHHHHHHhCCCH
Confidence 344455555444466676665421 1 223555666643 111 11112234555556666666665554
No 276
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=32.41 E-value=8.7e+02 Score=28.41 Aligned_cols=106 Identities=14% Similarity=0.222 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhc------CCChhHHHHHHHHHHHHHhhCh-------------hHHH
Q 002083 291 NAVLYECICCVSSIYAN--PKLIESAADVIARFLK------SDSHNLKYMGIDALGRLIKTSP-------------EIAE 349 (969)
Q Consensus 291 ~AVlyEaik~I~~l~~~--~~ll~~ai~~L~~fL~------s~d~NlrYvaL~~L~~I~~~~P-------------~l~~ 349 (969)
.+...+|+.++..+... ..+...+...+..++. +.+..-|-.+|..+..|+...- ++..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 45666777666554321 2222333334444444 2345577888888888875431 1222
Q ss_pred HhHHhhccccC---CCchHHHHHHHHHhhcccC---CCcHHHHHHHHHHHHhh
Q 002083 350 QHQLAVIDCLE---DPDDTLKRKTFELLYKMTK---SSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 350 ~h~~~I~~cL~---D~D~sIR~kaLdLL~~L~n---~~Nv~~IV~eLl~yl~~ 396 (969)
-+...|+.-|. +.-+.+|-+|++.++.--| ++.+..++.-+..++..
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQS 357 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCC
Confidence 22233333333 2336789999998886544 45556677777777753
No 277
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.27 E-value=3.2e+02 Score=35.65 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=57.2
Q ss_pred chHhhHHHHHHHhcCCCChHHHHHHHHHHHHH---HhhCCcch----hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhC
Q 002083 141 ETIPAVLPQVVELLGHSKEAVRRKAIMALHRF---YQKSPSSV----QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVD 213 (969)
Q Consensus 141 el~~~l~~~V~~lL~d~~pyVRKkA~lal~ki---y~~~Pe~v----~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~ 213 (969)
+|+..++...+.+|+|.+-.+|=+|+-++.-. ...+++.+ ...++-+...+.++||.++..|+..+..++...
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 45667777888899999999999999887653 34556643 246777888888999999999998888877654
Q ss_pred c
Q 002083 214 V 214 (969)
Q Consensus 214 p 214 (969)
.
T Consensus 879 g 879 (1014)
T KOG4524|consen 879 G 879 (1014)
T ss_pred h
Confidence 3
No 278
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.27 E-value=2e+02 Score=37.73 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=60.4
Q ss_pred HHHHhhcCC-CcchhHHHHHHHHhhhccCchHH-----HHHHHHHHhhhcCccHHHHHHHHHHHHcccccc---------
Q 002083 77 HAVKMTHDD-NLVLKRTGYLAVTLFLNEDHDLI-----ILIVNTIQKDLKSDNYLIVCAALNAVCKLINEE--------- 141 (969)
Q Consensus 77 ~vIkl~sS~-~~~~KRlgYLals~~~~~~~dll-----lL~iNtLqKDL~s~N~~vralALr~Ls~I~~~e--------- 141 (969)
.|+..+.++ .-.+|+-..+.+..+.....+-- .++.--|-.-|.++-|.|||.|+-+|+.+..-.
T Consensus 603 iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~ 682 (1387)
T KOG1517|consen 603 ICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTL 682 (1387)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhh
Confidence 455666663 56678888888888777654422 233444555677778888888877777654420
Q ss_pred ------------h-HhhHHH----HHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q 002083 142 ------------T-IPAVLP----QVVELLGHSKEAVRRKAIMALHRFYQKSP 177 (969)
Q Consensus 142 ------------l-~~~l~~----~V~~lL~d~~pyVRKkA~lal~kiy~~~P 177 (969)
+ ++..+. .+..++++.+|.||+.-+.++.++..-+-
T Consensus 683 ~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 683 VVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 0 222222 44455566777777776666666655443
No 279
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=31.47 E-value=2.2e+02 Score=29.00 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHhcCCCHHHHH------HHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002083 291 NAVLYECICCVSSIYANPKLIE------SAADVIARFLKSDSHNLKYMGIDALGRLI 341 (969)
Q Consensus 291 ~AVlyEaik~I~~l~~~~~ll~------~ai~~L~~fL~s~d~NlrYvaL~~L~~I~ 341 (969)
..+.++|++|+-.+..+..-++ .++..|...|.+.++.+|-.+++.|..|+
T Consensus 130 ~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4678888888877665443222 25667888888888999999999988765
No 280
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=1.3e+03 Score=30.09 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=41.5
Q ss_pred cCccHHHHHHHHHHHHcccc------cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch-hhHHH
Q 002083 120 KSDNYLIVCAALNAVCKLIN------EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV-QHLVS 185 (969)
Q Consensus 120 ~s~N~~vralALr~Ls~I~~------~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v-~~l~~ 185 (969)
.++-+-+++.||+.|.++.. ..+-+-++...+..|.|.++||-=.|+-++.-+...+|+.+ +++.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e 809 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSE 809 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHH
Confidence 34455677777777776543 23344556666777777777777777777666677777643 44444
No 281
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=30.87 E-value=70 Score=33.28 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHH
Q 002083 295 YECICCVSSIYAN-PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQL 353 (969)
Q Consensus 295 yEaik~I~~l~~~-~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~ 353 (969)
|||+.+++....+ -++. ...+.+..=|.+ +++||.++...|.+++..+|..+.++..
T Consensus 48 yE~lytlLd~~~~~~~~~-~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld 105 (169)
T PF08623_consen 48 YECLYTLLDTCLSRIDIS-EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD 105 (169)
T ss_dssp HHHHHHHHHSTCSSS-HH-HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT
T ss_pred HHHHHHHHHHHHHhCCHH-HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 6666666543221 1111 123444444444 7999999999999999999988877643
No 282
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.68 E-value=1.6e+03 Score=30.92 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=84.3
Q ss_pred cCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhh-------HHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 002083 103 EDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPA-------VLPQVVELLGHSKEAVRRKAIMALHRFYQK 175 (969)
Q Consensus 103 ~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~-------l~~~V~~lL~d~~pyVRKkA~lal~kiy~~ 175 (969)
-++|+.+.+=+..+ .++..+.-||..++.++++.-.+. ....+.+++.|.+..||-...-.+.++...
T Consensus 39 ~dsel~~I~kkL~K-----kD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~ 113 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLK-----RDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK 113 (1312)
T ss_pred cCHHHHHHHHHHhc-----cChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 45666554434333 457788899999998877654443 344567888999999999999998888776
Q ss_pred CCcch----hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhC--chhhHHHHHHHHHHHHHHHhccCCCC
Q 002083 176 SPSSV----QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVD--VNSYKDLVISFVSILKQVAERRLPKS 239 (969)
Q Consensus 176 ~Pe~v----~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~--p~~~~~Lv~~lv~iLk~l~~~~lp~~ 239 (969)
--..+ +.+++-+.-..+|.+..|-.+|...+-+....+ +..+-..-+.+..++.+++.+.-|..
T Consensus 114 lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~s 183 (1312)
T KOG0803|consen 114 LKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDS 183 (1312)
T ss_pred HHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccc
Confidence 44332 223333334458999999999988887765422 11222223556666666554444443
No 283
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=30.28 E-value=71 Score=23.78 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFY 173 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy 173 (969)
.++.+.++|.+.++-|++.|+.++..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4566777888888999999999988763
No 284
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.90 E-value=1.1e+02 Score=29.49 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhC
Q 002083 183 LVSNFRKRLCDNDPGVMGATLCPLFDLITVD 213 (969)
Q Consensus 183 l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~ 213 (969)
.++.+.+-|.|.++.|+.+|+.+|++.|..+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 3566777889999999999999999998765
No 285
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.72 E-value=3.9e+02 Score=30.67 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=45.5
Q ss_pred HHHhhhcCccHHHHHHHHHHHHccccc------chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 002083 114 TIQKDLKSDNYLIVCAALNAVCKLINE------ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQK 175 (969)
Q Consensus 114 tLqKDL~s~N~~vralALr~Ls~I~~~------el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~ 175 (969)
.+-+-|.++||.+|..|.+.+..+... .--...+++|.+++.++.+ -.-|+.|+.++.+.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 455667889999999999888776655 1124677889999999888 56677888887764
No 286
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=29.00 E-value=5.1e+02 Score=24.79 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=24.8
Q ss_pred chHhhHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhCC
Q 002083 141 ETIPAVLPQVVELLG-HSKEAVRRKAIMALHRFYQKSP 177 (969)
Q Consensus 141 el~~~l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~~P 177 (969)
+++..++|.+.++|. ...+-.|=.|.|-+..+..+.|
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~ 39 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP 39 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC
Confidence 455667777777777 5666777777777776666543
No 287
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=28.40 E-value=9.3e+02 Score=27.45 Aligned_cols=73 Identities=10% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHhh--------ChhHHHHhHHhhccccCCCchHHHHHHHHHhhc
Q 002083 308 PKLIESAADVIARFLKSD---SHNLKYMGIDALGRLIKT--------SPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYK 376 (969)
Q Consensus 308 ~~ll~~ai~~L~~fL~s~---d~NlrYvaL~~L~~I~~~--------~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~ 376 (969)
+.+++...++...++..+ -|+.|---...|..+.+. .|+.|......++-.+++++..|...+|++|..
T Consensus 112 ~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ 191 (319)
T PF08767_consen 112 PQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLE 191 (319)
T ss_dssp HHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 556667777777777642 256554444455555544 444555555666777799999999999999887
Q ss_pred ccCC
Q 002083 377 MTKS 380 (969)
Q Consensus 377 L~n~ 380 (969)
|.+.
T Consensus 192 ll~~ 195 (319)
T PF08767_consen 192 LLNN 195 (319)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 288
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=27.81 E-value=5e+02 Score=24.23 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhhhcCC----chHHHHHHHHHHHhhhCccchHHHHHHHHHHHh
Q 002083 401 HYKTEIASRCVELAEQFAP----SNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIA 452 (969)
Q Consensus 401 ~~k~eli~~I~~laekyap----~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~ 452 (969)
+=+.+++..+-.++..... ...||+.+|-+++..+.+|+..++ .++-+++.
T Consensus 19 ~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E~-~RL~~lL~ 73 (95)
T PF07749_consen 19 DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKEI-ARLERLLE 73 (95)
T ss_dssp HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHHH-HHHHHHHh
Confidence 5577888887777776543 468999999999999999998874 45667666
No 289
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=27.79 E-value=1.9e+02 Score=33.05 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHH
Q 002083 311 IESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRM 390 (969)
Q Consensus 311 l~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eL 390 (969)
-..|-..|.+.+.......||+-+++- +..+-+.+.++++...|.-|.|.|..-|.+ .+|..+|+. |=++.
T Consensus 142 tsdaq~aLrr~mE~~s~~trFiLIcny--lsrii~pi~SRC~KfrFk~L~d~~iv~rL~------~Ia~~E~v~-~d~~a 212 (346)
T KOG0989|consen 142 TSDAQAALRRTMEDFSRTTRFILICNY--LSRIIRPLVSRCQKFRFKKLKDEDIVDRLE------KIASKEGVD-IDDDA 212 (346)
T ss_pred hHHHHHHHHHHHhccccceEEEEEcCC--hhhCChHHHhhHHHhcCCCcchHHHHHHHH------HHHHHhCCC-CCHHH
Confidence 344667788888876677787754432 222334577889999999999987654444 357777776 44455
Q ss_pred HHHHhhcCChhhHHHH
Q 002083 391 IDYMISINDNHYKTEI 406 (969)
Q Consensus 391 l~yl~~~~D~~~k~el 406 (969)
++++...+|-++|+.+
T Consensus 213 l~~I~~~S~GdLR~Ai 228 (346)
T KOG0989|consen 213 LKLIAKISDGDLRRAI 228 (346)
T ss_pred HHHHHHHcCCcHHHHH
Confidence 5666666677776543
No 290
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=27.48 E-value=3.5e+02 Score=31.84 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHH
Q 002083 148 PQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFV 225 (969)
Q Consensus 148 ~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv 225 (969)
.+|.+.-.-.+--=..--+|.++-....+|+.-++.+..|.++|.-.||.|+.-||.++-.+..+-.+.|+.=+ ..|.
T Consensus 11 ~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~ 90 (462)
T KOG2199|consen 11 QDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFT 90 (462)
T ss_pred HHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHH
Confidence 34444433333333455677788888888987788999999999999999999999887666554444544322 3455
Q ss_pred HHHHHHHh
Q 002083 226 SILKQVAE 233 (969)
Q Consensus 226 ~iLk~l~~ 233 (969)
+-|+.+++
T Consensus 91 ~el~al~~ 98 (462)
T KOG2199|consen 91 TELRALIE 98 (462)
T ss_pred HHHHHHHh
Confidence 55555543
No 291
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=27.40 E-value=5.2e+02 Score=26.42 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=28.6
Q ss_pred cCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccccc
Q 002083 103 EDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINE 140 (969)
Q Consensus 103 ~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~ 140 (969)
+.|+|+-++.|.++.+ ++ ..+|--|+|+|+-|+--
T Consensus 7 ~yP~LL~~L~~iLk~e-~s--~~iR~E~lr~lGilGAL 41 (160)
T PF11865_consen 7 DYPELLDILLNILKTE-QS--QSIRREALRVLGILGAL 41 (160)
T ss_pred HhHHHHHHHHHHHHhC-CC--HHHHHHHHHHhhhcccc
Confidence 3578888999999999 43 78999999999987643
No 292
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=27.14 E-value=1.4e+03 Score=28.94 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcccc-----cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-CCcchhhH
Q 002083 125 LIVCAALNAVCKLIN-----EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQK-SPSSVQHL 183 (969)
Q Consensus 125 ~vralALr~Ls~I~~-----~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~-~Pe~v~~l 183 (969)
-+.++.|+.|..++. +.+...++..+...-.....-+|--|.+|+.++... .++.+.+.
T Consensus 257 e~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~v 321 (661)
T KOG2256|consen 257 EVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPV 321 (661)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 355566666655432 334444444444444567888999999999976664 46666543
No 293
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=27.04 E-value=9.8e+02 Score=27.27 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 002083 308 PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIK 342 (969)
Q Consensus 308 ~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~ 342 (969)
++..+..++.+.--+.+.++++.-.||+.+..|+.
T Consensus 160 ~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 160 PEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 34444455555555556666666666666666653
No 294
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=26.82 E-value=6.5e+02 Score=30.31 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=37.7
Q ss_pred HHHHHHcccccchHhhHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHhhCC
Q 002083 130 ALNAVCKLINEETIPAVLPQVVELLGHS-----KEAVRRKAIMALHRFYQKSP 177 (969)
Q Consensus 130 ALr~Ls~I~~~el~~~l~~~V~~lL~d~-----~pyVRKkA~lal~kiy~~~P 177 (969)
.|.-+++|.++++..+++.-+..+++|. +..-|++|++|+...|....
T Consensus 430 Gl~k~~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S 482 (657)
T COG5117 430 GLVKYRKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEIAS 482 (657)
T ss_pred HHHHHHhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhh
Confidence 4455678889999988888888888864 45678899999998887544
No 295
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=26.80 E-value=2.9e+02 Score=29.42 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=52.4
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHH
Q 002083 112 VNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSN 186 (969)
Q Consensus 112 iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~ 186 (969)
...+.+=..|.|...|=.|+-+.-......-.+.+...+..++.|+.-+|+|.--=+|--+.+.+|+.+..+++.
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~ 191 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVAA 191 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345566677888776655554433333323345666678888899999999998888888999999988766543
No 296
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=26.00 E-value=5.6e+02 Score=27.93 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHH---------HHHhcCCCChHHHHHHHHHHHHHHhhCCcc
Q 002083 109 ILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQ---------VVELLGHSKEAVRRKAIMALHRFYQKSPSS 179 (969)
Q Consensus 109 lL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~---------V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~ 179 (969)
.-+-+.|..-+.+.|+-+|-.|++++-.++.--.-..-.+. =...+...+|+++.+++.+=.+
T Consensus 42 ~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~-------- 113 (239)
T PF11935_consen 42 NELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEAN-------- 113 (239)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHH--------
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHH--------
Confidence 34445555558888999999999999775421111110000 0112223456666554443322
Q ss_pred hhhHHHHHHHhhcCC--ChhHHHHHHHHHHHhhhhCchhhHHHH
Q 002083 180 VQHLVSNFRKRLCDN--DPGVMGATLCPLFDLITVDVNSYKDLV 221 (969)
Q Consensus 180 v~~l~~~l~~lL~D~--D~~Vv~aAl~~L~ei~~~~p~~~~~Lv 221 (969)
.+++.+.+.|.+. ++.++.++++.|..|.+.+|..+..++
T Consensus 114 --~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il 155 (239)
T PF11935_consen 114 --GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRIL 155 (239)
T ss_dssp --HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred --HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3556666666544 477788888889889988887544333
No 297
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=25.80 E-value=1e+03 Score=27.14 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHH
Q 002083 291 NAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKT 370 (969)
Q Consensus 291 ~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~ka 370 (969)
....|.|+=..+ -.+|+.+..+..-+.+.+.....+.--........++..+|.++. ..+..||.|.+.-|+|-+
T Consensus 171 ~~~F~~~lwl~i--i~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv---~al~~~L~D~~iLVqR~~ 245 (307)
T PF04118_consen 171 DKYFWQCLWLCI--ITSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLV---RALCACLEDENILVQRGF 245 (307)
T ss_pred hhHHHHHHHHHH--hcCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHH---HHHHHHhCCchHHHHHHH
Confidence 445666653222 244555555666555555432111111112222333444566554 357788999999999999
Q ss_pred HHHhhcc
Q 002083 371 FELLYKM 377 (969)
Q Consensus 371 LdLL~~L 377 (969)
||+|...
T Consensus 246 LDlLl~~ 252 (307)
T PF04118_consen 246 LDLLLSH 252 (307)
T ss_pred HHHHHHh
Confidence 9987653
No 298
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.74 E-value=6.9e+02 Score=25.05 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHHHH-HHHHHhccC
Q 002083 161 VRRKAIMALHRFYQKSPSSVQHLVSNFRKRLC-DNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFVSI-LKQVAERRL 236 (969)
Q Consensus 161 VRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~-D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv~i-Lk~l~~~~l 236 (969)
--...++-+.-+.+..+..-++.+..|++.|. .+|+.|+.-||.+|-.++++-+..|+.-+ ..|++- |..++..+
T Consensus 17 ~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~- 95 (141)
T cd03565 17 EDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPK- 95 (141)
T ss_pred cCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHccc-
Confidence 34555666666666555555567778888886 47899998888877555554455555443 345553 55544311
Q ss_pred CCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 237 PKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 237 p~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
++ +..=.+-+++.++..+.
T Consensus 96 ---~~----~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 96 ---NN----PPTIVQEKVLALIQAWA 114 (141)
T ss_pred ---CC----CcHHHHHHHHHHHHHHH
Confidence 11 12235666777765543
No 299
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=25.64 E-value=9.6e+02 Score=26.71 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=21.3
Q ss_pred hhHHHHhHHhhccccCCCchHHHHHHHHHhhccc
Q 002083 345 PEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMT 378 (969)
Q Consensus 345 P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~ 378 (969)
|++-.+-...++..|.+.-..+|..+|++|+.+.
T Consensus 183 P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll 216 (262)
T PF14225_consen 183 PDHEFQILTFLLGLLENGPPWLRRKTLQILKVLL 216 (262)
T ss_pred chhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 5544444445566666666778888887776543
No 300
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.14 E-value=3e+02 Score=33.28 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHh------HHhhccccC-C-CchHHHHHHHHHhh
Q 002083 313 SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQH------QLAVIDCLE-D-PDDTLKRKTFELLY 375 (969)
Q Consensus 313 ~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h------~~~I~~cL~-D-~D~sIR~kaLdLL~ 375 (969)
-++..|.+-|.++.+.++|++|..|-.+++..-..|..+ ....+.+.+ . +|.-||.|+|.||.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 456677788888889999999998888888766665422 223333332 3 46677777776664
No 301
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=24.16 E-value=4.3e+02 Score=27.68 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=17.1
Q ss_pred chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 002083 141 ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFY 173 (969)
Q Consensus 141 el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy 173 (969)
+++..++..|.+....+-.-||-.|..|+.++.
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555555555555555555555
No 302
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.08 E-value=2.5e+02 Score=28.18 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhChhHHH
Q 002083 291 NAVLYECICCVSSIYANPKLIESAADVIARFLK-SDSHNLKYMGIDALGRLIKTSPEIAE 349 (969)
Q Consensus 291 ~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~-s~d~NlrYvaL~~L~~I~~~~P~l~~ 349 (969)
.+..+|.+-.|-. .. .--+.|+..|.+=|. +.++++.+.+|..|-.+++....-|.
T Consensus 19 w~~ileicD~In~-~~--~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh 75 (141)
T cd03565 19 WGLNMEICDIINE-TE--DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFH 75 (141)
T ss_pred HHHHHHHHHHHhC-CC--CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHH
Confidence 3555555555532 11 112345666666565 46789999999999999887765553
No 303
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=23.23 E-value=6.9e+02 Score=27.88 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhChhHHH---Hh--HHhhccccCCC--chHHHHHHHHHhhcc
Q 002083 312 ESAADVIARFLK-SDSHNLKYMGIDALGRLIKTSPEIAE---QH--QLAVIDCLEDP--DDTLKRKTFELLYKM 377 (969)
Q Consensus 312 ~~ai~~L~~fL~-s~d~NlrYvaL~~L~~I~~~~P~l~~---~h--~~~I~~cL~D~--D~sIR~kaLdLL~~L 377 (969)
+...+.|..||. +..+.++..+|+.|..+.-.+|.-.. .+ ...|...+++. |..+|.|.+|.|+-.
T Consensus 132 ~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 132 EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHH
Confidence 457788999994 46689999999999999988875433 22 12455555443 556777777666543
No 304
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=23.18 E-value=7.1e+02 Score=28.77 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=39.2
Q ss_pred cCccHHHHHHHHHHHHc-ccccchHhhHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhCCcc
Q 002083 120 KSDNYLIVCAALNAVCK-LINEETIPAVLPQVVELLGHSK--EAVRRKAIMALHRFYQKSPSS 179 (969)
Q Consensus 120 ~s~N~~vralALr~Ls~-I~~~el~~~l~~~V~~lL~d~~--pyVRKkA~lal~kiy~~~Pe~ 179 (969)
.+.++..|..||..|.. -....++|++...|-..+.+.. ..-.-..+|.+.+-...+|.+
T Consensus 188 ~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 188 VGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred hCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 35788889999988854 3345556666666666655433 244456667777777788875
No 305
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=23.14 E-value=2.5e+02 Score=31.08 Aligned_cols=62 Identities=29% Similarity=0.464 Sum_probs=41.9
Q ss_pred HHHHHhcCCC--ChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhc---CCChh-HHHHHHHHHHHh
Q 002083 148 PQVVELLGHS--KEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLC---DNDPG-VMGATLCPLFDL 209 (969)
Q Consensus 148 ~~V~~lL~d~--~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~---D~D~~-Vv~aAl~~L~ei 209 (969)
..+++++.++ ..|||-.|+-|+..+....|..-+.++..+..++. .++++ |.+.-++.++++
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL 181 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc
Confidence 4567778765 68999999999999999998866666666655542 23444 444444444444
No 306
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=23.13 E-value=2.6e+03 Score=30.91 Aligned_cols=163 Identities=9% Similarity=0.085 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCC----------CCCCCc----------hHHHHHHHHHHhcCCC
Q 002083 248 PFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDS----------SSNIGN----------AVLYECICCVSSIYAN 307 (969)
Q Consensus 248 PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~----------~~Ni~~----------AVlyEaik~I~~l~~~ 307 (969)
+-++-.+..+..++.+.++...+.+.+.+..++...-. ..++-. .-+.-|.+++..+...
T Consensus 395 ~~l~e~l~~l~~rl~~l~~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~~~~~~~~~~~~~~~a~~~l~~~~~~ 474 (2341)
T KOG0891|consen 395 DSLLERLFILSQRIPKLGQSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKAILQKTGDSTDDIQLAFKTLGGFKFS 474 (2341)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhCccccCccccCccchhcccchhhhhcccccHHHHHHHHHHhhhhhh
Confidence 44455666777777777776666666655555542100 000000 0011233333332221
Q ss_pred -HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChh--------H--HHHhHHhhccc-cCCCchHHHHHHHHHhh
Q 002083 308 -PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPE--------I--AEQHQLAVIDC-LEDPDDTLKRKTFELLY 375 (969)
Q Consensus 308 -~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~--------l--~~~h~~~I~~c-L~D~D~sIR~kaLdLL~ 375 (969)
..+....-..+..++...+.++|-.+......+.+..+. + |+........| +.|+|+.||.+.+.-+.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~ 554 (2341)
T KOG0891|consen 475 GYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN 554 (2341)
T ss_pred hhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc
Confidence 111111222344556666677777776666666655444 3 33333333333 45777778888887777
Q ss_pred -----cccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002083 376 -----KMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAE 415 (969)
Q Consensus 376 -----~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~lae 415 (969)
.+|-+.|+....--|-.++ -.++..++..|+.+++
T Consensus 555 ~~~~~~laQ~~~lr~~~~al~~~~-----l~~~~~~~~~ig~l~~ 594 (2341)
T KOG0891|consen 555 ERFDAQLAQPDLLRLLFIALHDEN-----FAIQELATVIIGRLSS 594 (2341)
T ss_pred cchhhhhcCchhHHHHHHHhhhhh-----hhhHHhHHhhcccccc
Confidence 4666666665333332222 2455556666666665
No 307
>PF11532 HnRNP_M: Heterogeneous nuclear ribonucleoprotein M; InterPro: IPR024666 Heterogeneous nuclear ribonucleoproteins (hnRNPs) bind directly to nascent RNA polymerase II transcripts and play an important role in both transcript-specific packaging and alternative splicing of pre-mRNAs []. hnRNP M proteins are an abundant group of hnRNPs that have been shown to bind avidly to poly(G) and poly(U) RNA homopolymers []. hnRNP M family members are able to induce exon skipping and promote exon inclusion, suggesting that the proteins may broadly contribute to the fidelity of splice site recognition and alternative splicing regulation []. This entry represents the N-terminal PY nuclear localisation signal of heterogeneous nuclear ribonucleoprotein M [].; PDB: 2OT8_C.
Probab=23.02 E-value=32 Score=25.26 Aligned_cols=12 Identities=50% Similarity=0.841 Sum_probs=2.7
Q ss_pred CccccccCCCCC
Q 002083 651 HGLRFEAYELPK 662 (969)
Q Consensus 651 ~~l~~~~y~~p~ 662 (969)
.+=+||||+.|.
T Consensus 17 gg~rfEPY~Np~ 28 (30)
T PF11532_consen 17 GGNRFEPYANPT 28 (30)
T ss_dssp ------SS--S-
T ss_pred CCcccccccCcc
Confidence 457999999774
No 308
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=22.53 E-value=4.7e+02 Score=27.13 Aligned_cols=107 Identities=10% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCh------hHHHHHHHHHHHHHhhC----hhHHHHhHHhhccccCCC--chHHHHHHHHHhhcccCCCc
Q 002083 315 ADVIARFLKSDSH------NLKYMGIDALGRLIKTS----PEIAEQHQLAVIDCLEDP--DDTLKRKTFELLYKMTKSSN 382 (969)
Q Consensus 315 i~~L~~fL~s~d~------NlrYvaL~~L~~I~~~~----P~l~~~h~~~I~~cL~D~--D~sIR~kaLdLL~~L~n~~N 382 (969)
...|.+++.+... ++--.+|.++..+.... ..+-..+...|....+.. |.+|-+++|.+|-.|+..+.
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~ 92 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSP 92 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCH
Q ss_pred H-------HHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHH
Q 002083 383 V-------EVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHW 423 (969)
Q Consensus 383 v-------~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W 423 (969)
- +.-++.|+.|++. .|.++....+.-|.-+..| +++.+|
T Consensus 93 ~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~k-A~~~~r 138 (160)
T PF11841_consen 93 KLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLK-ADDSKR 138 (160)
T ss_pred HHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc-CChHHH
No 309
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=22.43 E-value=1.4e+02 Score=22.78 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 183 LVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 183 l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
.++.|.++|.+.|+.|...|+.+|..++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6788999999999999999999887764
No 310
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=22.41 E-value=5.4e+02 Score=31.81 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCCCCcccccCCCccccCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCCCcchhhhccccC
Q 002083 827 VQPPPDLLDLGEPAVLSRSPSIDPFKQLEGLLDSPQVPSNSNHGAAGANKDSDIIGLHAETA 888 (969)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (969)
.-+|-||..|- +|+.+|+||=|.+- +.+ ..++.|...+.-++.|--..+|++..
T Consensus 322 ~aapIDLFqlp---~ts~a~~vdlf~~~---~~p--~~p~~n~~q~~qts~p~~~~~f~~~~ 375 (648)
T PLN03119 322 TKAPIDLFQLP---GAPVAQSVDTFQPS---IAP--RSPPVNLQQAPQTYSFTPANSFAGNL 375 (648)
T ss_pred cCCchhhhhcc---CCCCCccccccccc---cCC--CCCccccCCCccccCCcchhhhhccc
Confidence 57788988766 89999999988652 222 33356666677788888888886543
No 311
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.13 E-value=2e+03 Score=29.18 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=46.9
Q ss_pred CCChhHHHHHHHHHHHHHhhChhHHHH--hHHhhccccCCCchHHHHHHHHHhhcccCC
Q 002083 324 SDSHNLKYMGIDALGRLIKTSPEIAEQ--HQLAVIDCLEDPDDTLKRKTFELLYKMTKS 380 (969)
Q Consensus 324 s~d~NlrYvaL~~L~~I~~~~P~l~~~--h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~ 380 (969)
+-+++||.+.+..|..=++.+|.+|-. |...|==.|.|...+||++.+..|-.+-..
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 456999999999999999999998853 445555568899999999999888887655
No 312
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.85 E-value=8.3e+02 Score=24.59 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=51.7
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh----CchhhH
Q 002083 143 IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV----DVNSYK 218 (969)
Q Consensus 143 ~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~----~p~~~~ 218 (969)
.+.+...+..+|.|.++-|.|.|+-|++. | ++| .+...-+.+..++.|..- --.+..|. +... .++.-.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~-~-k~~-~l~pY~d~L~~Lldd~~f---rdeL~~f~-~~~~~~~I~~ehR~ 87 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLT-W-KDP-YLTPYKDNLENLLDDKTF---RDELTTFN-LSDESSVIEEEHRP 87 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-h-CcH-HHHhHHHHHHHHcCcchH---HHHHHhhc-ccCCcCCCCHHHHh
Confidence 34566677899999999999999999986 2 234 344456778888876421 12222221 1111 123334
Q ss_pred HHHHHHHHHHHHHH
Q 002083 219 DLVISFVSILKQVA 232 (969)
Q Consensus 219 ~Lv~~lv~iLk~l~ 232 (969)
.++|-+++||..-+
T Consensus 88 ~l~pvvlRILygk~ 101 (141)
T PF07539_consen 88 ELMPVVLRILYGKM 101 (141)
T ss_pred HHHHHHHHHHHHHH
Confidence 57788888887644
No 313
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=21.72 E-value=7.8e+02 Score=27.96 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=41.2
Q ss_pred hhcccC-CCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHH-HhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHH
Q 002083 374 LYKMTK-SSNVEVIVDRMIDYMISINDNHYKTEIASRCVE-LAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLI 451 (969)
Q Consensus 374 L~~L~n-~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~-laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI 451 (969)
|-.|++ +++--..+-|+++|+.+.-....-+.++..|.+ +|+. .+..-+..+...++...+.......|..++++|
T Consensus 171 L~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~--~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li 248 (292)
T PF13929_consen 171 LKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAES--RDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLI 248 (292)
T ss_pred HHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhc--ccHHHHHHHHHHhcccCCCCCCCchHHHHHHHH
Confidence 444665 444445667777888743112333444444432 3331 233333455555544433444566888999988
Q ss_pred hc
Q 002083 452 AE 453 (969)
Q Consensus 452 ~~ 453 (969)
.+
T Consensus 249 ~~ 250 (292)
T PF13929_consen 249 VE 250 (292)
T ss_pred HH
Confidence 75
No 314
>PRK14015 pepN aminopeptidase N; Provisional
Probab=21.66 E-value=1.9e+03 Score=28.80 Aligned_cols=161 Identities=15% Similarity=0.148 Sum_probs=91.2
Q ss_pred hhHHHHHHHHhhhcc-CchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHH
Q 002083 89 LKRTGYLAVTLFLNE-DHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIM 167 (969)
Q Consensus 89 ~KRlgYLals~~~~~-~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~l 167 (969)
.|++--+++..+... +++..-|+...++ +.+|-..+-.||++|.+...+ -|..|+.
T Consensus 681 ~R~l~n~~l~~l~~~~~~~~~~~~~~~~~---~a~~mtd~~~al~~l~~~~~~--------------------~~~~~l~ 737 (875)
T PRK14015 681 RRALRNVCLSYLAAADDEEAAELAEAQFD---QADNMTDRLAALSALVNADLP--------------------ERDEALA 737 (875)
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHh---hCCCHHHHHHHHHHHhcCCCh--------------------HHHHHHH
Confidence 344444444444432 2333344444443 335666666777776553322 4555666
Q ss_pred HHHHHHhhCCcchhh------------HHHHHHHhhcC-----CChhHHHHHHHHHHHhhh-----hCchhhHHHHHHHH
Q 002083 168 ALHRFYQKSPSSVQH------------LVSNFRKRLCD-----NDPGVMGATLCPLFDLIT-----VDVNSYKDLVISFV 225 (969)
Q Consensus 168 al~kiy~~~Pe~v~~------------l~~~l~~lL~D-----~D~~Vv~aAl~~L~ei~~-----~~p~~~~~Lv~~lv 225 (969)
..+.-++.+|-.+.. .++.+++++.. ++|.-+.+-+..|..-.. .+...|+-+...++
T Consensus 738 ~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~ 817 (875)
T PRK14015 738 DFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQIL 817 (875)
T ss_pred HHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHH
Confidence 666666666655542 45666666543 467666666555532111 11223443333222
Q ss_pred HHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCC
Q 002083 226 SILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSN 288 (969)
Q Consensus 226 ~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~N 288 (969)
.+ - -.||-.-.++++-|..+.+-|+.....|...|..++....-++|
T Consensus 818 ~l----d------------~~Np~~aarl~~~~~~~~~~~~~r~~~~~~~l~~i~~~~~ls~d 864 (875)
T PRK14015 818 AL----D------------KINPQVAARLATPLIRWRRYDPKRQALMRAALERIAALPNLSKD 864 (875)
T ss_pred Hh----c------------CcCHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHHHhCcCCCcc
Confidence 22 1 13899999999999999999988888888888888775433333
No 315
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=21.58 E-value=6.4e+02 Score=31.58 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=42.7
Q ss_pred cCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhh-cCCChhHHHHHHHHHHHhh
Q 002083 154 LGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRL-CDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 154 L~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL-~D~D~~Vv~aAl~~L~ei~ 210 (969)
..++++.+|+.+...+.++....|+..+ +..|+++| ....+++.++++..+-+.+
T Consensus 451 ~~~p~~~lR~~~~~ll~~iL~~~p~~~r--f~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 451 VYCPSPELRKIAFTLLTRILHLFPEETR--FKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHCCcHhH--HHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 3588999999999999999999998763 45566666 4467788888877765544
No 316
>PF07778 CENP-I: Mis6 ; InterPro: IPR012485 Centromere protein Cenp-I (also known as Mis6) is an essential centromere connector protein acting during G1-S phase of the cell cycle. Mis6 is thought to be required for recruiting Cenp-A, the centromere- specific histone H3 variant; an important event for centromere function and chromosome segregation during mitosis [, ].
Probab=21.31 E-value=8.2e+02 Score=30.05 Aligned_cols=92 Identities=14% Similarity=0.211 Sum_probs=54.0
Q ss_pred CCchHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHhcC-CChhHHHHHHHHHHHHHh--hChhHHHHhHHhhccccCCCch
Q 002083 289 IGNAVLYECICCVSSIYANPKLIESAA-DVIARFLKS-DSHNLKYMGIDALGRLIK--TSPEIAEQHQLAVIDCLEDPDD 364 (969)
Q Consensus 289 i~~AVlyEaik~I~~l~~~~~ll~~ai-~~L~~fL~s-~d~NlrYvaL~~L~~I~~--~~P~l~~~h~~~I~~cL~D~D~ 364 (969)
.+.++...-+|| +.|+..+-+.++ ..++.+..+ .+++++-.-|+-|..+.. .+++.+......+|..|++ .
T Consensus 113 l~~~~~~~lik~---LiP~~~v~~~~v~~ivs~Lg~~k~s~~~Q~~llrWLi~v~~~id~~~~L~~~Y~vlF~~L~~--~ 187 (511)
T PF07778_consen 113 LDQATNTRLIKC---LIPAERVSEDVVVRIVSWLGVGKPSPSTQALLLRWLIAVYDFIDDKDVLSKLYGVLFNLLDY--E 187 (511)
T ss_pred cchHHHHHHHHh---cCcCCcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH--H
Confidence 344444444443 345433333333 333334333 446777777776665543 2356677777777777755 5
Q ss_pred HHHHHHHHHhhcccCCCcHHH
Q 002083 365 TLKRKTFELLYKMTKSSNVEV 385 (969)
Q Consensus 365 sIR~kaLdLL~~L~n~~Nv~~ 385 (969)
++|.-.-.||+-++..+||+.
T Consensus 188 ~lrp~~chLL~llTrr~~Vkp 208 (511)
T PF07778_consen 188 SLRPYLCHLLYLLTRREHVKP 208 (511)
T ss_pred HHHHHHHHHHHHHhccccCch
Confidence 788888888888888877643
No 317
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=21.19 E-value=3e+02 Score=25.14 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhChhHHHHhHHhhcccc----CCCchHHHHHHHHHhh
Q 002083 313 SAADVIARFLK-SDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCL----EDPDDTLKRKTFELLY 375 (969)
Q Consensus 313 ~ai~~L~~fL~-s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL----~D~D~sIR~kaLdLL~ 375 (969)
....++..++. ..+.++|-..|+++.+|+..+.+-+..=...||..+ .|.+..|-+.|.+++-
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34455555543 356788888888888888777655544444555544 4666777777777653
No 318
>PLN03131 hypothetical protein; Provisional
Probab=20.70 E-value=4e+02 Score=33.21 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=38.1
Q ss_pred CCCCCcccccCCCccccCCCCCChhhhhhcccCCCCCCCCCCCCCCCCCCCcchhhhccccC
Q 002083 827 VQPPPDLLDLGEPAVLSRSPSIDPFKQLEGLLDSPQVPSNSNHGAAGANKDSDIIGLHAETA 888 (969)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (969)
..+|-||..|- +|+.+|+||=|. +.+-...++.|...+.-++.|--..||++..
T Consensus 358 ~a~pIDLFqlp---~ts~a~~vdlf~-----~s~l~~~p~~n~~q~~qts~p~~~dlfag~~ 411 (705)
T PLN03131 358 MAPPIDLFQLP---ATSPAPPVDLFE-----IPPLDPAPAINAYQPPQTSLPSSIDLFGGIT 411 (705)
T ss_pred cCCchhhhhcc---CCCCCCcccccc-----cCcccCCCccccCCCCcccCCcccccccccc
Confidence 67888998766 899999999987 3332233355666667777777777777654
No 319
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=20.42 E-value=6.8e+02 Score=26.28 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHH
Q 002083 48 DIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIV 127 (969)
Q Consensus 48 ~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vr 127 (969)
.++..+ |+.+++.=|+.+ .+ .-+.+.++..+.-.+....+-.|-.+......+++- +...|.+...+ +.||
T Consensus 24 ~L~~~e-k~~lW~~R~~l~-~~--p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~---AL~LL~~~f~~--~~VR 94 (184)
T PF00613_consen 24 ELTEEE-KELLWKYRYYLM-NN--PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED---ALELLSPNFPD--PFVR 94 (184)
T ss_dssp SS-HHH-HHHHHHTHHHHT-TS--GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH---HHHCTSTT-----HHHH
T ss_pred cCCHHH-HHHHHHCCHHhh-hC--chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH---HHHHHHhhccH--HHHH
Confidence 355443 567777554322 22 223444444334444444444444444433333332 22233333332 5566
Q ss_pred HHHHHHHHcccccchHhhHHHHHHHhcC
Q 002083 128 CAALNAVCKLINEETIPAVLPQVVELLG 155 (969)
Q Consensus 128 alALr~Ls~I~~~el~~~l~~~V~~lL~ 155 (969)
..|.+.|.++...++. ..+|+++++|+
T Consensus 95 ~yAv~~L~~~~d~~l~-~yLpQLVQaLr 121 (184)
T PF00613_consen 95 QYAVRRLESLSDEELL-FYLPQLVQALR 121 (184)
T ss_dssp HHHHHHHCTS-HHHHH-HHHHHHHHHGG
T ss_pred HHHHHHHHHcCchHHH-HHHHHHHHHhe
Confidence 6666666553333332 33444444444
No 320
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.21 E-value=73 Score=25.54 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=18.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHhC
Q 002083 23 ARSKAEEDRIVLNEIETLKRRIS 45 (969)
Q Consensus 23 ~ks~~eE~~~I~~ElaeiR~~f~ 45 (969)
|.+..+|.+++++|++++|..-.
T Consensus 14 ce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 14 CESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45667899999999999996433
Done!