Query 002083
Match_columns 969
No_of_seqs 326 out of 1436
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 2.6E-95 9E-100 878.0 50.6 560 9-586 9-592 (621)
2 1w63_A Adapter-related protein 100.0 5.1E-89 1.7E-93 822.8 52.9 566 7-590 6-584 (618)
3 2vgl_B AP-2 complex subunit be 100.0 8.2E-70 2.8E-74 651.8 44.9 515 34-590 12-539 (591)
4 3tjz_B Coatomer subunit gamma; 100.0 1.9E-53 6.5E-58 478.0 17.3 321 36-380 27-354 (355)
5 1b3u_A Protein (protein phosph 99.5 1.1E-11 3.8E-16 145.2 35.0 473 75-582 89-586 (588)
6 1w63_A Adapter-related protein 99.4 6.4E-11 2.2E-15 142.6 34.6 356 58-434 86-470 (618)
7 1b3u_A Protein (protein phosph 99.4 1.1E-10 3.9E-15 136.6 33.9 461 84-581 59-546 (588)
8 2vgl_B AP-2 complex subunit be 99.4 1.8E-11 6.2E-16 146.5 27.5 387 114-542 17-421 (591)
9 4fdd_A Transportin-1; heat rep 99.4 3.2E-09 1.1E-13 131.7 48.2 490 74-579 129-695 (852)
10 4fdd_A Transportin-1; heat rep 99.4 1.1E-09 3.7E-14 135.9 39.0 344 78-433 53-493 (852)
11 1qgr_A Protein (importin beta 99.3 2E-08 6.9E-13 123.6 46.5 483 79-581 223-825 (876)
12 1u6g_C TIP120 protein, CAND1; 99.3 1.2E-09 4.3E-14 140.7 37.0 333 72-418 5-406 (1230)
13 2bpt_A Importin beta-1 subunit 99.3 1.2E-07 4.3E-12 116.3 50.5 481 74-579 135-707 (861)
14 1jdh_A Beta-catenin; beta-cate 99.3 2.6E-09 8.9E-14 123.9 32.6 438 105-580 12-527 (529)
15 2z6g_A B-catenin; FULL-length, 99.3 1.8E-09 6.3E-14 133.4 33.0 475 74-583 116-663 (780)
16 1oyz_A Hypothetical protein YI 99.3 5.3E-10 1.8E-14 119.9 23.8 252 111-409 24-276 (280)
17 1qgr_A Protein (importin beta 99.2 6.5E-08 2.2E-12 119.0 44.7 455 103-581 125-677 (876)
18 2jdq_A Importin alpha-1 subuni 99.2 2.2E-09 7.6E-14 121.7 29.1 327 111-479 21-390 (450)
19 2jdq_A Importin alpha-1 subuni 99.2 3.5E-09 1.2E-13 120.1 30.2 320 75-416 22-391 (450)
20 2bpt_A Importin beta-1 subunit 99.2 2.8E-08 9.5E-13 122.1 39.2 477 77-579 99-664 (861)
21 1wa5_B Importin alpha subunit; 99.2 8.8E-09 3E-13 120.8 31.1 323 72-416 86-458 (530)
22 2z6h_A Catenin beta-1, beta-ca 99.2 5.7E-08 1.9E-12 117.1 38.7 436 110-583 14-527 (644)
23 2vgl_A Adaptor protein complex 99.2 1.3E-08 4.4E-13 122.8 31.9 391 89-519 59-488 (621)
24 1wa5_B Importin alpha subunit; 99.2 3.6E-08 1.2E-12 115.6 34.6 285 74-379 131-457 (530)
25 4b8j_A Importin subunit alpha- 99.1 2.6E-08 9E-13 116.5 31.4 321 73-415 74-443 (528)
26 1u6g_C TIP120 protein, CAND1; 99.1 2E-07 6.8E-12 120.2 39.8 445 76-541 51-599 (1230)
27 4b8j_A Importin subunit alpha- 99.1 2.6E-07 8.9E-12 108.0 36.6 286 74-379 118-443 (528)
28 2z6g_A B-catenin; FULL-length, 99.1 4.8E-08 1.6E-12 120.8 31.8 444 112-584 117-623 (780)
29 1jdh_A Beta-catenin; beta-cate 99.0 3.2E-07 1.1E-11 106.3 35.3 320 75-415 19-385 (529)
30 1ibr_B P95, importin beta-1 su 99.0 5.3E-08 1.8E-12 110.4 27.8 360 78-501 6-438 (462)
31 3tpo_A Importin subunit alpha- 99.0 3.5E-07 1.2E-11 107.7 34.1 345 146-579 120-493 (529)
32 2z6h_A Catenin beta-1, beta-ca 98.9 1.4E-06 4.7E-11 105.0 36.9 431 75-539 16-526 (644)
33 1oyz_A Hypothetical protein YI 98.9 1.1E-07 3.6E-12 101.9 23.7 225 147-415 25-250 (280)
34 3ul1_B Importin subunit alpha- 98.9 1.5E-06 5.1E-11 102.0 34.8 322 71-414 55-429 (510)
35 3now_A UNC-45 protein, SD10334 98.9 2.6E-06 8.8E-11 105.1 37.9 408 24-479 236-737 (810)
36 3ul1_B Importin subunit alpha- 98.9 2.5E-06 8.6E-11 100.0 33.9 254 146-417 101-389 (510)
37 3tpo_A Importin subunit alpha- 98.8 4.4E-06 1.5E-10 98.3 35.4 318 72-411 75-445 (529)
38 3now_A UNC-45 protein, SD10334 98.8 1.5E-05 5.1E-10 98.4 39.4 312 81-415 255-652 (810)
39 3ltm_A Alpha-REP4; protein eng 98.7 4.8E-07 1.7E-11 92.6 19.4 88 112-209 21-108 (211)
40 4hxt_A De novo protein OR329; 98.7 1.4E-06 4.8E-11 90.3 22.7 178 147-345 4-202 (252)
41 4hxt_A De novo protein OR329; 98.7 2.4E-06 8E-11 88.6 23.3 218 112-346 4-245 (252)
42 3tjz_B Coatomer subunit gamma; 98.6 4.5E-07 1.5E-11 102.0 16.7 239 115-379 73-316 (355)
43 3ltj_A Alpharep-4; protein eng 98.6 2E-06 6.9E-11 87.3 20.1 89 111-209 15-103 (201)
44 2db0_A 253AA long hypothetical 98.6 5.1E-06 1.7E-10 84.0 22.1 210 145-413 32-244 (253)
45 4db8_A Armadillo-repeat protei 98.6 4.8E-06 1.6E-10 87.1 21.7 217 146-379 13-251 (252)
46 1ibr_B P95, importin beta-1 su 98.6 2.2E-05 7.5E-10 88.8 28.4 315 86-419 50-441 (462)
47 3ltm_A Alpha-REP4; protein eng 98.6 1.9E-06 6.4E-11 88.2 17.8 187 144-380 18-204 (211)
48 4db8_A Armadillo-repeat protei 98.4 2E-05 6.7E-10 82.3 22.0 182 71-267 10-213 (252)
49 3b2a_A TON_1937, putative unch 98.4 1.6E-06 5.6E-11 90.8 13.2 191 183-395 34-234 (265)
50 3ltj_A Alpharep-4; protein eng 98.4 1.6E-05 5.5E-10 80.5 19.8 183 73-304 14-196 (201)
51 4db6_A Armadillo repeat protei 98.4 1.5E-05 5E-10 81.1 19.1 185 67-262 6-208 (210)
52 4db6_A Armadillo repeat protei 98.3 5.1E-05 1.7E-09 77.0 19.6 178 144-379 11-209 (210)
53 2x19_B Importin-13; nuclear tr 98.2 0.0016 5.4E-08 81.6 36.1 169 82-263 34-231 (963)
54 1wa5_C Importin alpha RE-expor 98.2 0.0042 1.4E-07 78.2 39.3 117 93-212 23-153 (960)
55 2qk2_A LP04448P; mini spindles 98.1 8.8E-05 3E-09 77.8 18.6 153 77-232 19-185 (242)
56 1xm9_A Plakophilin 1; armadill 98.1 0.00089 3E-08 77.4 28.0 338 147-501 4-450 (457)
57 2qk2_A LP04448P; mini spindles 98.0 0.00019 6.5E-09 75.2 19.1 183 141-378 11-204 (242)
58 1xm9_A Plakophilin 1; armadill 98.0 0.0013 4.4E-08 76.0 27.5 288 74-382 45-452 (457)
59 2qk1_A Protein STU2; STU2P, XM 98.0 0.0001 3.5E-09 78.7 15.3 153 80-232 23-200 (249)
60 3l6x_A Catenin delta-1; cateni 97.9 0.0082 2.8E-07 71.7 33.0 340 145-500 48-476 (584)
61 2qk1_A Protein STU2; STU2P, XM 97.9 0.00019 6.7E-09 76.5 16.1 181 148-378 19-219 (249)
62 3l6x_A Catenin delta-1; cateni 97.9 0.013 4.5E-07 69.9 32.9 159 72-231 47-247 (584)
63 3nmw_A APC variant protein; AR 97.9 0.0015 5.2E-08 73.3 23.6 243 120-379 42-334 (354)
64 2x1g_F Cadmus; transport prote 97.8 0.0044 1.5E-07 77.8 29.9 437 82-540 16-572 (971)
65 3m1i_C Exportin-1; heat repeat 97.8 0.037 1.3E-06 70.4 38.1 173 77-264 20-225 (1049)
66 1te4_A Conserved protein MTH18 97.8 1.8E-05 6.2E-10 75.4 5.2 116 75-207 14-129 (131)
67 3nmz_A APC variant protein; pr 97.8 0.0044 1.5E-07 72.0 26.1 238 126-380 164-451 (458)
68 2x1g_F Cadmus; transport prote 97.7 0.23 7.8E-06 62.2 43.6 293 125-429 204-586 (971)
69 3opb_A SWI5-dependent HO expre 97.7 0.023 7.8E-07 69.5 32.2 278 124-418 308-686 (778)
70 1wa5_C Importin alpha RE-expor 97.7 0.0092 3.2E-07 75.1 29.9 125 87-211 375-525 (960)
71 3opb_A SWI5-dependent HO expre 97.6 0.19 6.5E-06 61.5 37.7 429 121-579 181-724 (778)
72 2db0_A 253AA long hypothetical 97.5 0.01 3.5E-07 60.3 20.8 210 182-450 32-244 (253)
73 4ady_A RPN2, 26S proteasome re 97.5 0.15 5.2E-06 63.7 35.8 284 112-432 394-697 (963)
74 1xqr_A HSPBP1 protein; armadil 97.5 0.0038 1.3E-07 68.3 18.6 142 74-215 82-242 (296)
75 1xqr_A HSPBP1 protein; armadil 97.4 0.0051 1.7E-07 67.4 19.2 139 113-266 84-241 (296)
76 1te4_A Conserved protein MTH18 97.3 6.2E-05 2.1E-09 71.7 2.2 88 112-210 14-101 (131)
77 4ady_A RPN2, 26S proteasome re 97.3 0.044 1.5E-06 68.4 27.7 276 84-396 406-699 (963)
78 2x19_B Importin-13; nuclear tr 97.2 0.95 3.2E-05 56.4 38.4 125 83-210 459-598 (963)
79 3a6p_A Exportin-5; exportin-5, 97.2 0.17 5.7E-06 65.5 31.8 53 157-210 108-161 (1204)
80 3b2a_A TON_1937, putative unch 97.1 0.0068 2.3E-07 63.8 14.8 177 144-343 32-219 (265)
81 3nmw_A APC variant protein; AR 97.1 0.039 1.3E-06 61.8 21.7 207 122-347 96-339 (354)
82 4hat_C Exportin-1; heat repeat 97.0 0.062 2.1E-06 68.4 25.5 107 106-212 447-570 (1023)
83 3ibv_A Exportin-T; karyopherin 97.0 1 3.5E-05 56.9 36.4 271 86-378 21-360 (980)
84 3grl_A General vesicular trans 96.9 0.089 3E-06 63.0 23.8 252 83-347 32-347 (651)
85 3nmz_A APC variant protein; pr 96.9 0.036 1.2E-06 64.3 20.1 206 122-346 212-454 (458)
86 3m1i_C Exportin-1; heat repeat 96.7 1.5 5.1E-05 55.6 34.4 107 119-228 25-147 (1049)
87 3gjx_A Exportin-1; transport, 96.5 2.2 7.4E-05 54.5 33.4 109 106-214 473-598 (1073)
88 4ffb_C Protein STU2; tubulin f 96.5 0.024 8.3E-07 60.6 13.6 62 150-211 14-84 (278)
89 3ibv_A Exportin-T; karyopherin 96.3 0.15 5E-06 64.6 21.7 138 90-228 416-583 (980)
90 4hat_C Exportin-1; heat repeat 96.3 4.1 0.00014 51.8 36.2 162 88-264 31-225 (1023)
91 3u0r_A Apoptosis inhibitor 5; 96.3 2.1 7.1E-05 49.5 28.6 131 75-210 31-162 (507)
92 2of3_A ZYG-9; multifunctional 96.3 0.018 6.1E-07 62.1 11.1 140 76-215 49-240 (266)
93 4ffb_C Protein STU2; tubulin f 96.1 0.064 2.2E-06 57.3 14.5 132 80-212 16-169 (278)
94 1ho8_A Vacuolar ATP synthase s 95.9 1 3.5E-05 52.1 23.6 356 130-541 82-477 (480)
95 3grl_A General vesicular trans 95.7 0.43 1.5E-05 57.1 20.2 236 91-347 108-399 (651)
96 3u0r_A Apoptosis inhibitor 5; 95.2 1.5 5.2E-05 50.7 21.7 161 325-498 40-204 (507)
97 3o2t_A Symplekin; heat repeat, 95.2 1.6 5.6E-05 49.2 21.7 78 126-203 41-121 (386)
98 1lsh_A Lipovitellin (LV-1N, LV 94.9 0.49 1.7E-05 60.4 18.8 157 40-208 361-540 (1056)
99 3tt9_A Plakophilin-2; cell adh 94.8 0.4 1.4E-05 50.6 14.5 155 114-268 12-185 (233)
100 3gs3_A Symplekin, LD45768P; he 94.2 3.2 0.00011 44.3 20.1 81 126-206 31-114 (257)
101 3tt9_A Plakophilin-2; cell adh 94.0 3.4 0.00012 43.4 19.6 163 71-233 6-208 (233)
102 3gjx_A Exportin-1; transport, 93.7 21 0.00072 45.5 39.1 174 76-264 31-237 (1073)
103 3a6p_A Exportin-5; exportin-5, 93.4 9.2 0.00032 49.4 26.2 253 123-396 26-362 (1204)
104 3l9t_A Putative uncharacterize 93.0 0.77 2.6E-05 48.4 12.5 97 121-221 115-217 (240)
105 2of3_A ZYG-9; multifunctional 93.0 2.2 7.4E-05 45.9 16.3 181 143-375 44-232 (266)
106 3l9t_A Putative uncharacterize 93.0 0.71 2.4E-05 48.7 12.2 100 82-184 113-217 (240)
107 2iw3_A Elongation factor 3A; a 92.2 32 0.0011 43.4 36.4 251 110-380 54-328 (986)
108 4gmo_A Putative uncharacterize 90.6 1.9 6.6E-05 52.1 14.1 81 150-231 39-131 (684)
109 2iw3_A Elongation factor 3A; a 88.2 64 0.0022 40.7 33.3 208 111-342 96-324 (986)
110 1lrv_A LRV, leucine-rich repea 88.0 0.35 1.2E-05 51.3 4.4 162 117-374 57-218 (244)
111 1lsh_A Lipovitellin (LV-1N, LV 86.4 73 0.0025 40.5 25.0 89 328-420 493-581 (1056)
112 4gmo_A Putative uncharacterize 82.8 7.4 0.00025 47.0 13.0 20 249-268 200-219 (684)
113 1x5b_A Signal transducing adap 82.0 14 0.00048 36.5 12.5 105 148-262 18-124 (163)
114 2b6c_A Hypothetical protein EF 80.9 11 0.00038 38.9 11.8 134 78-217 60-194 (220)
115 3g2s_A C-terminal fragment of 79.7 35 0.0012 33.2 14.2 112 146-262 12-125 (149)
116 3o2t_A Symplekin; heat repeat, 79.7 47 0.0016 37.4 17.1 149 73-221 63-266 (386)
117 1juq_A ADP-ribosylation factor 79.3 21 0.00071 35.6 12.7 112 146-262 14-127 (171)
118 1mhq_A ADP-ribosylation factor 77.4 21 0.00073 34.7 11.9 108 150-262 6-115 (148)
119 3ldz_A STAM-1, signal transduc 74.8 31 0.001 33.1 12.1 103 149-262 9-113 (140)
120 3s4w_B Protein FACD2, fanconi 73.1 1.8E+02 0.0061 37.9 21.6 313 12-343 243-607 (1323)
121 1x5b_A Signal transducing adap 72.9 22 0.00077 35.0 10.9 94 80-173 22-124 (163)
122 1vsy_4 Proteasome activator BL 72.7 91 0.0031 38.4 18.5 82 140-221 334-424 (799)
123 1vsy_5 Proteasome activator BL 70.8 6.6 0.00022 49.7 7.9 111 80-191 767-892 (997)
124 3dad_A FH1/FH2 domain-containi 70.3 21 0.00072 39.4 10.8 76 314-393 161-247 (339)
125 3ldz_A STAM-1, signal transduc 69.0 37 0.0013 32.5 11.2 93 81-173 13-113 (140)
126 3dad_A FH1/FH2 domain-containi 68.9 1.4E+02 0.0049 32.9 17.1 95 120-214 170-289 (339)
127 1dvp_A HRS, hepatocyte growth 68.3 45 0.0015 34.3 12.5 105 147-261 7-113 (220)
128 1t06_A Hypothetical protein; s 67.7 17 0.0006 37.8 9.3 67 151-217 114-186 (235)
129 3zyq_A Hepatocyte growth facto 67.6 44 0.0015 34.7 12.2 103 149-261 12-116 (226)
130 3oc3_A Helicase MOT1, MOT1; re 67.6 1E+02 0.0034 36.8 15.9 230 80-338 181-432 (800)
131 1mhq_A ADP-ribosylation factor 67.0 45 0.0015 32.3 11.4 88 89-176 17-118 (148)
132 1juq_A ADP-ribosylation factor 66.4 54 0.0018 32.6 12.1 98 80-177 20-131 (171)
133 3g2s_A C-terminal fragment of 66.0 57 0.0019 31.7 11.9 98 81-178 19-130 (149)
134 1elk_A Target of MYB1; superhe 64.7 70 0.0024 31.2 12.4 108 146-261 17-128 (157)
135 3jxy_A Alkylpurine DNA glycosy 64.1 23 0.00078 36.8 9.3 70 146-217 132-201 (232)
136 3zyq_A Hepatocyte growth facto 61.0 89 0.0031 32.3 13.1 89 80-172 15-116 (226)
137 1t06_A Hypothetical protein; s 59.3 52 0.0018 34.2 11.0 112 78-189 53-195 (235)
138 3gs3_A Symplekin, LD45768P; he 58.5 1.9E+02 0.0064 30.6 20.5 161 56-217 34-249 (257)
139 3jxy_A Alkylpurine DNA glycosy 56.5 17 0.00057 37.8 6.6 71 115-185 136-206 (232)
140 1vsy_5 Proteasome activator BL 56.5 3.9E+02 0.013 33.7 26.9 132 305-437 793-949 (997)
141 1upk_A MO25 protein; transfera 55.9 2.4E+02 0.0083 31.1 22.3 101 313-413 209-333 (341)
142 2b6c_A Hypothetical protein EF 54.7 21 0.0007 36.8 6.9 71 114-184 128-198 (220)
143 3qml_C Protein SLS1, nucleotid 54.5 2.1E+02 0.0071 31.2 14.8 16 363-378 173-188 (315)
144 1uw4_B UPF2, regulator of nons 49.5 2.6E+02 0.0087 29.5 15.3 122 296-418 23-166 (248)
145 1dvp_A HRS, hepatocyte growth 44.3 1.6E+02 0.0054 30.1 11.7 47 89-135 21-67 (220)
146 1lrv_A LRV, leucine-rich repea 41.5 19 0.00064 38.0 4.1 67 114-204 150-216 (244)
147 3qml_C Protein SLS1, nucleotid 40.1 2.6E+02 0.009 30.4 12.8 108 157-281 82-189 (315)
148 1elk_A Target of MYB1; superhe 36.8 2.8E+02 0.0095 26.8 11.5 100 75-174 17-130 (157)
149 3oc3_A Helicase MOT1, MOT1; re 34.7 1.4E+02 0.0048 35.5 10.1 73 116-192 269-344 (800)
150 1vdy_A Hypothetical protein (R 32.8 1.4E+02 0.0049 28.7 8.4 53 179-231 46-98 (140)
151 1ho8_A Vacuolar ATP synthase s 32.7 63 0.0022 37.4 6.9 74 102-175 391-477 (480)
152 3ebb_A Phospholipase A2-activa 31.3 5.2E+02 0.018 27.7 18.1 105 56-174 106-220 (304)
153 2f31_A Diaphanous protein homo 29.6 98 0.0033 31.9 7.2 40 353-392 99-142 (233)
154 3eg5_B Protein diaphanous homo 23.3 1.6E+02 0.0054 32.9 7.9 64 326-393 133-209 (383)
155 2ot8_C HnRNP M, heterogeneous 23.1 24 0.00082 24.8 0.7 12 651-662 17-28 (30)
156 3rru_A TOM1L1 protein; structu 22.9 4.8E+02 0.016 25.2 10.3 85 291-378 34-129 (152)
157 1vdy_A Hypothetical protein (R 22.9 1.9E+02 0.0065 27.8 7.2 73 310-382 46-133 (140)
158 3rru_A TOM1L1 protein; structu 22.4 3.6E+02 0.012 26.1 9.3 107 148-262 19-129 (152)
159 1upk_A MO25 protein; transfera 22.2 8.1E+02 0.028 26.9 25.9 120 120-263 174-311 (341)
160 4atg_A TAF6; transcription, TF 22.0 6.2E+02 0.021 25.5 13.7 140 180-340 9-160 (196)
161 4f52_E Glomulin; cullin-ring E 20.7 5.6E+02 0.019 30.3 12.3 94 114-209 321-429 (596)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=2.6e-95 Score=877.98 Aligned_cols=560 Identities=24% Similarity=0.411 Sum_probs=516.7
Q ss_pred CchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCc
Q 002083 9 QSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRIS-EPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNL 87 (969)
Q Consensus 9 ~sk~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~-~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~ 87 (969)
-.|.|++||++||+|+++++|+++|++|+++||++|+ +++.+.++++++|.|+||++|+|+|++|+|++|+++++|+|+
T Consensus 9 ~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~ 88 (621)
T 2vgl_A 9 GMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRY 88 (621)
T ss_dssp CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCH
T ss_pred CchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCH
Confidence 4599999999999999999999999999999999999 567788889999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhc--CCCChHHHHHH
Q 002083 88 VLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELL--GHSKEAVRRKA 165 (969)
Q Consensus 88 ~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL--~d~~pyVRKkA 165 (969)
..||+||||++.+++.++|+++|+||+|+|||+|+|+++||+|||+||+|++++|++.+.+.|+++| .|++|||||+|
T Consensus 89 ~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A 168 (621)
T 2vgl_A 89 TEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSA 168 (621)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHhhCCcchh--hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhc-cCC-CCcC
Q 002083 166 IMALHRFYQKSPSSVQ--HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAER-RLP-KSYD 241 (969)
Q Consensus 166 ~lal~kiy~~~Pe~v~--~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~-~lp-~~y~ 241 (969)
++|++|+|+.+|+.++ +|++.+.++|+|+|++|+.+|+++|++++..+++.|++++|.++++|++++.. .+| ++|+
T Consensus 169 ~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~ 248 (621)
T 2vgl_A 169 ALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYT 248 (621)
T ss_dssp HHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTE
T ss_pred HHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchh
Confidence 9999999999999999 89999999999999999999999999999999999999999999999998764 477 9999
Q ss_pred CCCCCChhHHHHHHHHHHHhCCC-ChHHHhhhHHHHHHhHhccC--------CCCCCCchHHHHHHHHHHhcCCCHHHHH
Q 002083 242 YHQMPAPFIQIRLLKILALLGSG-DKQASENMYTVVGDIFRKCD--------SSSNIGNAVLYECICCVSSIYANPKLIE 312 (969)
Q Consensus 242 y~~v~~PWlQikLLklL~~l~~~-d~~~se~l~~iL~~iL~~~~--------~~~Ni~~AVlyEaik~I~~l~~~~~ll~ 312 (969)
||++++||+|+++|++|+.|++. |++..+.++++|..+++... .++|+++||+|||+++|+.+.++++++.
T Consensus 249 ~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~ 328 (621)
T 2vgl_A 249 YYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV 328 (621)
T ss_dssp ETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999985 57788889999998886531 1236677999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh--hHHHHhHHhhccccC-CCchHHHHHHHHHhhcccCCCcHHHHHHH
Q 002083 313 SAADVIARFLKSDSHNLKYMGIDALGRLIKTSP--EIAEQHQLAVIDCLE-DPDDTLKRKTFELLYKMTKSSNVEVIVDR 389 (969)
Q Consensus 313 ~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P--~l~~~h~~~I~~cL~-D~D~sIR~kaLdLL~~L~n~~Nv~~IV~e 389 (969)
.+++.|++||.++++|+||++|++|.+|+..+| .++++|+..|+.||+ |+|++||++||++|+.|+|++|++.|++|
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~e 408 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAE 408 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHH
Confidence 999999999999999999999999999999986 789999999999999 99999999999999999999999999999
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHH
Q 002083 390 MIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSS 469 (969)
Q Consensus 390 Ll~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~ 469 (969)
|++|+.+ .|.+||++++.+|+.+|++|+++..||+++|++++..+|+++..++|..++++|.+ +|++|++
T Consensus 409 L~~yl~~-~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~---------~~~~~~~ 478 (621)
T 2vgl_A 409 MLSYLET-ADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN---------RDDVQGY 478 (621)
T ss_dssp HHHHHHH-CCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG---------GCSCHHH
T ss_pred HHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC---------ChhHHHH
Confidence 9999987 68899999999999999999999999999999999999999999999999988863 4789999
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHhccccCCCC---CCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcc
Q 002083 470 AVESYLRIIGEPKLPSVFLQVICWVLGEYGTADG---KVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAG 546 (969)
Q Consensus 470 av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~---~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~ 546 (969)
++..+++.++++...+.++++++||+||||+... ...+.++++.+.+.+. .++..||+++|+|++|+|.+.+
T Consensus 479 ~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~--~~~~~v~~~~Lta~~Kl~~~~p--- 553 (621)
T 2vgl_A 479 AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH--LCSVPTRALLLSTYIKFVNLFP--- 553 (621)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHCG---
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHCh---
Confidence 9999999999998888888899999999998532 1235567777665553 6788999999999999998754
Q ss_pred ccCCCcHHHHHHHHHHhc--CCChhHHhHHHHHHHHhcCCHH
Q 002083 547 RKVDMLPECQSLIEELSA--SHSTDLQQRAYELEAVTGLDAY 586 (969)
Q Consensus 547 ~~~~~~~~~~~lL~~~l~--s~d~EVQqRA~Ey~~LL~~~~e 586 (969)
+..+.++.+|+.+.. +.|+||||||+||++||+.+.+
T Consensus 554 ---~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~ 592 (621)
T 2vgl_A 554 ---EVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVAST 592 (621)
T ss_dssp ---GGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCS
T ss_pred ---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHH
Confidence 345677888888887 8999999999999999987643
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=5.1e-89 Score=822.82 Aligned_cols=566 Identities=25% Similarity=0.436 Sum_probs=520.5
Q ss_pred CCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCC
Q 002083 7 FGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDN 86 (969)
Q Consensus 7 ~~~sk~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~ 86 (969)
+..+++|++|||+||+|++++||+++|.+|+++||+.|++++. ++++++|.|++|++|+|+|++|+|++|++++++++
T Consensus 6 ~~~~~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~--~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~ 83 (618)
T 1w63_A 6 MPAPIRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDN--TYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQK 83 (618)
T ss_dssp CCCCCCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTCT--TTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSS
T ss_pred CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCc
Confidence 3467899999999999999999999999999999999998864 44668999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHH
Q 002083 87 LVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAI 166 (969)
Q Consensus 87 ~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~ 166 (969)
+..||+||||++.++++++|+++|+||+|+|||+|+|+++|++||++||+|+++++++.+.+.|.++|.|++|||||+|+
T Consensus 84 ~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~ 163 (618)
T 1w63_A 84 FTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAA 163 (618)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch---hhHHHHHHHHHHHHHHHhccCCCCcCCC
Q 002083 167 MALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN---SYKDLVISFVSILKQVAERRLPKSYDYH 243 (969)
Q Consensus 167 lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~---~~~~Lv~~lv~iLk~l~~~~lp~~y~y~ 243 (969)
+|++|+|+.+|+.++.+++.+.++|+|.|++|+.+|+.+|.+++..+++ .|+.++|.++++|++++.++++++|+|+
T Consensus 164 ~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 164 LCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 9999999999999999999999999999999999999999999987764 6788899999999999998999999999
Q ss_pred CCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002083 244 QMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLK 323 (969)
Q Consensus 244 ~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~ 323 (969)
++++||+|++++++|+.|++.+++..+.++++|..+++.++..+|.+++|+|||+++++.+..++.+...+++.|.+||.
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~ 323 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLL 323 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888899999999998877778888999999999999998888888899999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhH
Q 002083 324 SDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYK 403 (969)
Q Consensus 324 s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k 403 (969)
++++|+||++|.+|..|+..+|.++.+|+..|+.|++|+|.+||++||++|+.|+|++|++.|+++|++|+.+ .|.+||
T Consensus 324 ~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~-~d~e~r 402 (618)
T 1w63_A 324 NNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS-CEPEFK 402 (618)
T ss_dssp CSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH-CCHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh-CCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 688999
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCC
Q 002083 404 TEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKL 483 (969)
Q Consensus 404 ~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~ 483 (969)
++++.+|+.+|++|+++..||+++|+++++..|+++..++|..+.+++.+ +|++|++++..+++++++...
T Consensus 403 ~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~---------~p~l~~~~v~~L~~~l~~~~~ 473 (618)
T 1w63_A 403 ADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN---------SVEMHAYTVQRLYKAILGDYS 473 (618)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH---------SCSTHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc---------ChhHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999988888763 588999999999999986433
Q ss_pred chhHHHHHHHHhccccCCCC----------CCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcH
Q 002083 484 PSVFLQVICWVLGEYGTADG----------KVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLP 553 (969)
Q Consensus 484 ~e~l~~~i~WILGEY~~~~~----------~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~ 553 (969)
.+.+.++++|++||||+... ...+..+++.+...++.+.++..||+++|+|++|++.+.+ +..+
T Consensus 474 ~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~------~~~~ 547 (618)
T 1w63_A 474 QQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT------CTVN 547 (618)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS------SCHH
T ss_pred cHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc------chHH
Confidence 44556789999999996421 1345667777776666556789999999999999998753 3457
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHhcCCHHHHHh
Q 002083 554 ECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEI 590 (969)
Q Consensus 554 ~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~~e~l~~ 590 (969)
.+..+|+.+..+.|+||||||+||++||...+++...
T Consensus 548 ~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~~~~~~ 584 (618)
T 1w63_A 548 RIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSA 584 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcHHHHHH
Confidence 7888999999999999999999999999876554433
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=8.2e-70 Score=651.85 Aligned_cols=515 Identities=16% Similarity=0.243 Sum_probs=437.9
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHH
Q 002083 34 LNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVN 113 (969)
Q Consensus 34 ~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iN 113 (969)
+.|+++||++|++++. +++++++.|++|++|+|+|++|+|++++++++++++..||+||+|+..+++.++|+++|+||
T Consensus 12 ~~e~~~i~~~L~~~~~--~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n 89 (591)
T 2vgl_B 12 KGEIFELKAELNNEKK--EKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN 89 (591)
T ss_dssp SSHHHHHHHHTTSSCH--HHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHH
T ss_pred CChHHHHHHHHcCCCH--HHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHH
Confidence 4688999999998864 56779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh--hHHHHHHHhh
Q 002083 114 TIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ--HLVSNFRKRL 191 (969)
Q Consensus 114 tLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~--~l~~~l~~lL 191 (969)
+|+|||+|+|+.+|++||++||+++++++++.+.+.|.++|.|++|||||+|++|++++|+.+|+.++ .+++.+.++|
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL 169 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLI 169 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 4899999999
Q ss_pred cCCChhHHHHHHHHHHHhhhhCchh-hHHHHHH-HHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHH
Q 002083 192 CDNDPGVMGATLCPLFDLITVDVNS-YKDLVIS-FVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQAS 269 (969)
Q Consensus 192 ~D~D~~Vv~aAl~~L~ei~~~~p~~-~~~Lv~~-lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~s 269 (969)
.|.|++|+.+|+.+|.+++..+++. +..+.+. +..+++.+.+ .+||+|+++|++|..|++.++...
T Consensus 170 ~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~------------~~~~~q~~il~~l~~l~~~~~~~~ 237 (591)
T 2vgl_B 170 ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE------------CTEWGQIFILDCLSNYNPKDDREA 237 (591)
T ss_dssp SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH------------CCHHHHHHHHHHHHTSCCCSHHHH
T ss_pred CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC------------CCchHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999887754 3333333 2233333322 489999999999999999887666
Q ss_pred hhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC----CHHHHHH----HHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002083 270 ENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA----NPKLIES----AADVIARFLKSDSHNLKYMGIDALGRLI 341 (969)
Q Consensus 270 e~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~----~~~ll~~----ai~~L~~fL~s~d~NlrYvaL~~L~~I~ 341 (969)
+.+++.+...+++ . +.+|+|||++++..+.+ +++.++. +...|..+ .++++|+||++|.+|..|+
T Consensus 238 ~~~l~~l~~~l~~----~--~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 238 QSICERVTPRLSH----A--NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIV 310 (591)
T ss_dssp HHHHHHHTTCSCS----S--TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----C--ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHH
Confidence 6666666555542 2 36999999999999853 4455443 34455544 4588999999999999999
Q ss_pred hhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCch
Q 002083 342 KTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSN 421 (969)
Q Consensus 342 ~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~ 421 (969)
..+|+.+.+|...|+ |+.++|.+||++||++|+.|+|++|++.|+++|++|+.+ .|.+||++++.+|+.+|++|+++.
T Consensus 311 ~~~p~~~~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~-~d~~~r~~~v~aI~~la~~~~~~~ 388 (591)
T 2vgl_B 311 QKRPEILKQEIKVFF-VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATE-VDVDFVRKAVRAIGRCAIKVEQSA 388 (591)
T ss_dssp HHCCSTTTTCTTTTS-CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhChHHHHHHHHhhe-eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhChhHH
Confidence 999999999988765 654445999999999999999999999999999999986 688999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCC
Q 002083 422 HWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTA 501 (969)
Q Consensus 422 ~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~ 501 (969)
.||+++|++++...|+++..+++..+.+++. .+|+.+++++..+++.+++...++. +++++|++||||+.
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~---------~~p~~~~~~v~~L~~~l~~~~~~~~-~~~~~wilGey~~~ 458 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR---------KYPNKYESIIATLCENLDSLDEPDA-RAAMIWIVGEYAER 458 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH---------HSCSSCCTTHHHHHHTTTTCCSHHH-HHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHH---------HCcchHHHHHHHHHHHHHhccCHHH-HHHHHHHHHccccc
Confidence 9999999999999999999888876666664 2577788899999999988777775 67889999999986
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhc-CCChhHHhHHHHHHHH
Q 002083 502 DGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSA-SHSTDLQQRAYELEAV 580 (969)
Q Consensus 502 ~~~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~-s~d~EVQqRA~Ey~~L 580 (969)
.. +++++++.+++.+. .++..||.++|+|++|+|.+.+. ...+.++.+|+.+.. +.|+||||||+||++|
T Consensus 459 ~~--~~~~~l~~l~~~~~--~~~~~vr~~~l~a~~Kl~~~~p~-----~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 459 ID--NADELLESFLEGFH--DESTQVQLTLLTAIVKLFLKKPS-----ETQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp CT--THHHHHHHHSTTCS--SSCHHHHHHHHHHHHHHHTTCCS-----TTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred cc--CHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 43 46777777654332 56789999999999999987542 223567788888764 5789999999999999
Q ss_pred hcCCHHHHHh
Q 002083 581 TGLDAYAVEI 590 (969)
Q Consensus 581 L~~~~e~l~~ 590 (969)
|+.+.+.++.
T Consensus 530 l~~~~~~~~~ 539 (591)
T 2vgl_B 530 LSTDPVTAKE 539 (591)
T ss_dssp TTTCTTHHHH
T ss_pred HCcCHHHHHH
Confidence 9987655433
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=1.9e-53 Score=477.98 Aligned_cols=321 Identities=16% Similarity=0.282 Sum_probs=229.6
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCC-----CcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHH
Q 002083 36 EIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHD-----ASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIIL 110 (969)
Q Consensus 36 ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~D-----vsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL 110 (969)
.++|.| .|+++.++.++|+++|.|+||++++|.+ +++.||+|+|+++|+|+.+||+||||+..|++..+| ++|
T Consensus 27 v~qe~r-~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iL 104 (355)
T 3tjz_B 27 VLQEAR-VFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VII 104 (355)
T ss_dssp HHHHGG-GTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGG
T ss_pred HHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHH
Confidence 566655 9999999999999999999999999998 578999999999999999999999999999998555 679
Q ss_pred HHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHh
Q 002083 111 IVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKR 190 (969)
Q Consensus 111 ~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~l 190 (969)
+||+|+||++|+||++||+|||+||+|+.++|++++.+.|+++|.|.+|||||+|++|.+|+|..+||.++.|++.+.++
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~l 184 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEA 184 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHH
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCC-hHHH
Q 002083 191 LCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGD-KQAS 269 (969)
Q Consensus 191 L~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d-~~~s 269 (969)
++|+|++|+.+|+++|+++...++..+..++ ..|. + .++.+||.|+.+||++..|++.| ++..
T Consensus 185 l~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv----~~l~---~---------~~l~~~~~q~~llr~l~~~~~~d~~~~~ 248 (355)
T 3tjz_B 185 ASSDNIMVQYHALGLLYHVRKNDRLAVSKMI----SKFT---R---------HGLKSPFAYCMMIRVASRQLEDEDGSRD 248 (355)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHH---S---------SCCSCHHHHHHHHHHHTCC---------
T ss_pred hcCCCccHHHHHHHHHHHHHhhchHHHHHHH----HHHh---c---------CCCcChHHHHHHHHHHHHhccccchhhH
Confidence 9999999999999999999877654433332 2222 1 24668999999999999999988 6778
Q ss_pred hhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHH
Q 002083 270 ENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA-NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIA 348 (969)
Q Consensus 270 e~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~-~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~ 348 (969)
+.++++|..+|++ .+++|+|||+++|+.+.. ....+..++..|..||.++++|+||++|+.|.+|+..+|+++
T Consensus 249 ~~~~~~l~~~L~~------~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v 322 (355)
T 3tjz_B 249 SPLFDFIESCLRN------KHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV 322 (355)
T ss_dssp --------CCCCC------SSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC-----------
T ss_pred HHHHHHHHHHHcC------CChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH
Confidence 8899999888873 357999999999999876 355677889999999999999999999999999999999999
Q ss_pred HHhHHhhccccCCCchHHHHHHHHHhhcccCC
Q 002083 349 EQHQLAVIDCLEDPDDTLKRKTFELLYKMTKS 380 (969)
Q Consensus 349 ~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~ 380 (969)
+.|..+|..|+.|+|.+|+..|+..|.+..++
T Consensus 323 ~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 323 TACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHccCCcHhHHHHHHHHhhhccCC
Confidence 99999999999999999999999999998876
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.52 E-value=1.1e-11 Score=145.21 Aligned_cols=473 Identities=12% Similarity=0.115 Sum_probs=297.7
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhccCchH--HHHHHHHHHhhhcCccHHHHHHHHHHHHccc---ccchHhhHHHH
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDL--IILIVNTIQKDLKSDNYLIVCAALNAVCKLI---NEETIPAVLPQ 149 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dl--llL~iNtLqKDL~s~N~~vralALr~Ls~I~---~~el~~~l~~~ 149 (969)
...+.+++.+++...|..+--++..+....++- .-.+...+.+=..++++.+|..|...++.+. ...+.+.+.+.
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~ 168 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQY 168 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334445667888889998888888887655432 1233445555556788999999888877653 34456778888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhCCc--chhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHH
Q 002083 150 VVELLGHSKEAVRRKAIMALHRFYQKSPS--SVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSI 227 (969)
Q Consensus 150 V~~lL~d~~pyVRKkA~lal~kiy~~~Pe--~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~i 227 (969)
+.+++.|+++.||+.|+.++.++....+. ....+++.+..++.|.++.|..+|+..|..+....+.. ...+.++.+
T Consensus 169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~ 246 (588)
T 1b3u_A 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPT 246 (588)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHH
Confidence 88999999999999999999999987764 23567888899999999999888887777766543321 122334444
Q ss_pred HHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC--ChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC
Q 002083 228 LKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG--DKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY 305 (969)
Q Consensus 228 Lk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~--d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~ 305 (969)
+.++... +++..+....+.|..++.. .......+.+.+...++.. ...|...|+.++..+.
T Consensus 247 l~~~~~d-----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 247 LRQAAED-----------KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC------EAEVRAAASHKVKEFC 309 (588)
T ss_dssp HHHHHTC-----------SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS------SHHHHHHHHHHHHHHH
T ss_pred HHHHccC-----------CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCC------cHHHHHHHHHHHHHHH
Confidence 4444321 2344566666666655431 1112234556666666522 1356666666654432
Q ss_pred ---CCH----HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh-hHH-HHhHHhhccccCCCchHHHHHHHHHhhc
Q 002083 306 ---ANP----KLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP-EIA-EQHQLAVIDCLEDPDDTLKRKTFELLYK 376 (969)
Q Consensus 306 ---~~~----~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P-~l~-~~h~~~I~~cL~D~D~sIR~kaLdLL~~ 376 (969)
... ......+..+..++.+.++.+|..++..|..++...+ ..+ ..-...++.+++|++..+|..+++-|..
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 211 3455567778888888889999999999888876432 222 2223456678899999999999988887
Q ss_pred ccCCCc----HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCch--HHHHHHHHHHHhhhCccchHHHHHHHHHH
Q 002083 377 MTKSSN----VEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSN--HWFIQTMNKVFEHAGDLVNIKVAHNLMRL 450 (969)
Q Consensus 377 L~n~~N----v~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~--~W~Id~L~~ll~~~gd~v~~ev~~~li~l 450 (969)
++..-. ...++..|...+.+ .+...|..++..+..++..+.+.. .-.+..+..++......|....+..+-.+
T Consensus 390 l~~~~~~~~~~~~~lp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 468 (588)
T 1b3u_A 390 VNEVIGIRQLSQSLLPAIVELAED-AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKL 468 (588)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 765433 35567777776654 455678888888888887665432 23455566655433333444444433333
Q ss_pred HhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCC-CChHHHHHHHHHHHhhcCCcHHHHH
Q 002083 451 IAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGK-VSASYITGKLCDVAEAYSNDETIKA 529 (969)
Q Consensus 451 I~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~-~~~~~Il~~L~~~~~~~~e~~~Vk~ 529 (969)
...+|. ......++..+.+++.+... ..+..++|++|+.+...+. .-.+.++..+...+. .....||.
T Consensus 469 -~~~~~~------~~~~~~llp~l~~~~~~~~~--~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~--d~~~~Vr~ 537 (588)
T 1b3u_A 469 -VEKFGK------EWAHATIIPKVLAMSGDPNY--LHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG--DPVANVRF 537 (588)
T ss_dssp -HHHHCH------HHHHHHTHHHHHHTTTCSCH--HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG--CSCHHHHH
T ss_pred -HHHhCc------hhHHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC--CCCchHHH
Confidence 222321 11233445555555544432 3466788999988753210 001223333333322 45578999
Q ss_pred HHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHhc
Q 002083 530 YAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTG 582 (969)
Q Consensus 530 ~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~ 582 (969)
.++.++.+++... |.. ...+.+...|..+..+.|.+||+.|.+.+.-+.
T Consensus 538 ~a~~~l~~l~~~~---~~~-~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 538 NVAKSLQKIGPIL---DNS-TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHGGGS---CHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---chh-hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 9999999986431 110 012456677777788899999999999876554
No 6
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.45 E-value=6.4e-11 Score=142.63 Aligned_cols=356 Identities=14% Similarity=0.142 Sum_probs=252.2
Q ss_pred HHHHHHHHH--cCCCCcchHHH----HHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHH
Q 002083 58 IIRLVYVEM--LGHDASFGYIH----AVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAAL 131 (969)
Q Consensus 58 l~KLiyl~m--lG~Dvsf~~~~----vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralAL 131 (969)
+.|+.|++. +...-.-..+- +.+-+.++|...+-++--+++.+. .++++--++..+.+=|.|+|+++|-.|+
T Consensus 86 ~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L~~~~~~VRk~A~ 163 (618)
T 1w63_A 86 DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLLKTSNSYLRKKAA 163 (618)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 456666654 33322222222 334567888888888888887776 3677777789999999999999999999
Q ss_pred HHHHccc--ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcc---hhhHHHHHHHhhcC-------------
Q 002083 132 NAVCKLI--NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSS---VQHLVSNFRKRLCD------------- 193 (969)
Q Consensus 132 r~Ls~I~--~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~---v~~l~~~l~~lL~D------------- 193 (969)
.++.++. .|++++.+.+.+.++|.|.++.|+-.|+.++..+...+|+. +..+++.+.++|.+
T Consensus 164 ~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 164 LCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 9998875 68899999999999999999999999999999999888763 33345555554432
Q ss_pred --CChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh
Q 002083 194 --NDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN 271 (969)
Q Consensus 194 --~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~ 271 (969)
.|+......+.+|..++..+|..- ..+.++|.++.... + ..+-.++.......+.+..+.. ++...+.
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~~~~----~~~~~~L~~l~~~~---~--~~~~~~~aV~~ea~~~i~~l~~-~~~l~~~ 313 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDDDSS----EAMNDILAQVATNT---E--TSKNVGNAILYETVLTIMDIKS-ESGLRVL 313 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCHHHH----HTTHHHHHHHHHTS---C--CSSTHHHHHHHHHHHHHHHSCC-CHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHHHhcc---c--cccchHHHHHHHHHHHHHhcCC-CHHHHHH
Confidence 478877777777777776666432 23344555543210 0 0111245677777888877654 3333334
Q ss_pred hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH
Q 002083 272 MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY-ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ 350 (969)
Q Consensus 272 l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~-~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~ 350 (969)
..+.|..++...+ . -|.|-++.++..+. ..+.+++.....+...+.+++..+|-.+|+.|..|+.... +..
T Consensus 314 a~~~L~~~L~~~d--~----~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~ 385 (618)
T 1w63_A 314 AINILGRFLLNND--K----NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG 385 (618)
T ss_dssp HHHHHHHHHTCSS--T----TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH
T ss_pred HHHHHHHHHhCCC--C----chHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH
Confidence 5566777776432 2 35566666555443 2456666666778888888899999999999999987542 122
Q ss_pred hHHhhccccCCCchHHHHHHHHHhhcccCC--CcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHH
Q 002083 351 HQLAVIDCLEDPDDTLKRKTFELLYKMTKS--SNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTM 428 (969)
Q Consensus 351 h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~--~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L 428 (969)
-...++..+.+.|..+|+.++..|..++.. .+....++.|++.+... +.+++.+++..+.++..+++.-....+..|
T Consensus 386 iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~-~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L 464 (618)
T 1w63_A 386 MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA-GSYVRDDAVPNLIQLITNSVEMHAYTVQRL 464 (618)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT-GGGSCSSHHHHHHHHHHHSCSTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcChhHHHHHHHHH
Confidence 234556666678899999999999999884 78999999999999863 457888899999999998876667778888
Q ss_pred HHHHhh
Q 002083 429 NKVFEH 434 (969)
Q Consensus 429 ~~ll~~ 434 (969)
.+++..
T Consensus 465 ~~~l~~ 470 (618)
T 1w63_A 465 YKAILG 470 (618)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.43 E-value=1.1e-10 Score=136.64 Aligned_cols=461 Identities=10% Similarity=0.066 Sum_probs=274.3
Q ss_pred CCCcchhHHHHHHHHhhhcc--CchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccccc----chHhhHHHHHHHhcCCC
Q 002083 84 DDNLVLKRTGYLAVTLFLNE--DHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINE----ETIPAVLPQVVELLGHS 157 (969)
Q Consensus 84 S~~~~~KRlgYLals~~~~~--~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~----el~~~l~~~V~~lL~d~ 157 (969)
+++-..|+..--.+..+... .++..-.+...|.+-+.++++.+|..|..+++.+... .+.+.+.+.+.++..+.
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~ 138 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD 138 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS
T ss_pred CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC
Confidence 44445555544444443321 1222222233344445788999999999999887542 23456778888888888
Q ss_pred ChHHHHHHHHHHHHHHhhCCcch-hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch-hh-HHHHHHHHHHHHHHHhc
Q 002083 158 KEAVRRKAIMALHRFYQKSPSSV-QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN-SY-KDLVISFVSILKQVAER 234 (969)
Q Consensus 158 ~pyVRKkA~lal~kiy~~~Pe~v-~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~-~~-~~Lv~~lv~iLk~l~~~ 234 (969)
++.+|..|+.++..++...++.. +.+++.+..++.|.|+.|..+|+..|..++..-+. .+ ..++|.+...+ ..
T Consensus 139 ~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~----~d 214 (588)
T 1b3u_A 139 WFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA----SD 214 (588)
T ss_dssp SHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHH----TC
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHh----cC
Confidence 99999999999999988776543 46788888889999999999998888887765443 22 23444444333 21
Q ss_pred cCCCCcCCCCCCChhHHHHHHHHHHHhCCC--ChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC---CHH
Q 002083 235 RLPKSYDYHQMPAPFIQIRLLKILALLGSG--DKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA---NPK 309 (969)
Q Consensus 235 ~lp~~y~y~~v~~PWlQikLLklL~~l~~~--d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~---~~~ 309 (969)
.++..+...++.|..++.. +....+.+.+.+..+++.. ...|...+++++..+.. ...
T Consensus 215 -----------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~------~~~vR~~a~~~l~~l~~~~~~~~ 277 (588)
T 1b3u_A 215 -----------EQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDK------SWRVRYMVADKFTELQKAVGPEI 277 (588)
T ss_dssp -----------SCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCS------SHHHHHHHHHTHHHHHHHHCHHH
T ss_pred -----------CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCC------CHHHHHHHHHHHHHHHHHhCccc
Confidence 2445555555665554321 1122344556666655421 24678888887765532 122
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChh------HHHHhHHhhccccCCCchHHHHHHHHHhhcccC---C
Q 002083 310 LIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPE------IAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTK---S 380 (969)
Q Consensus 310 ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~------l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n---~ 380 (969)
....++..+..++.+.++++|-.+...|..++...+. +.......+..+++|++..+|..++..|..++. .
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~ 357 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 3345677888889888899999999999999876542 223333455667899999999999999988863 1
Q ss_pred C-cHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCch--HHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCC
Q 002083 381 S-NVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSN--HWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGE 457 (969)
Q Consensus 381 ~-Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~--~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~ 457 (969)
+ -...++.-|...+.+ .+.++|..++.++..++..+.+.. .-++..+..++....-.+....+.. +..+.+.+|.
T Consensus 358 ~~~~~~l~p~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~-l~~l~~~~~~ 435 (588)
T 1b3u_A 358 DNTIEHLLPLFLAQLKD-ECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY-MPLLAGQLGV 435 (588)
T ss_dssp HHHHHHTHHHHHHHHTC-SCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH-HHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHHHHHcCH
Confidence 1 124466666667765 456788888888888877654321 2223333333322111222222222 2222222222
Q ss_pred CccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCCC-ChHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 002083 458 DDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKV-SASYITGKLCDVAEAYSNDETIKAYAITALM 536 (969)
Q Consensus 458 ~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~-~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~ 536 (969)
+ .+...++..+...+.+.. . ..+..++..+|......+.. ..+.++..+..... ..+..+|...+.++.
T Consensus 436 ~------~~~~~l~~~l~~~l~d~~-~-~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--~~~~~~R~~a~~~l~ 505 (588)
T 1b3u_A 436 E------FFDEKLNSLCMAWLVDHV-Y-AIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG--DPNYLHRMTTLFCIN 505 (588)
T ss_dssp G------GCCHHHHHHHHHGGGCSS-H-HHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT--CSCHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHhcCCc-H-HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhh--CCCHHHHHHHHHHHH
Confidence 1 112345556666666543 2 23455566666655422100 01223333333221 345678988888888
Q ss_pred HHHHHhhhccccCCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHh
Q 002083 537 KIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVT 581 (969)
Q Consensus 537 KL~~~~~~~~~~~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL 581 (969)
++...... ....+.+...|...+.+.+.+||..+...+.-+
T Consensus 506 ~l~~~~~~----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l 546 (588)
T 1b3u_A 506 VLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKI 546 (588)
T ss_dssp HHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCH----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHH
Confidence 87653211 012344556666777888999999998866554
No 8
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.43 E-value=1.8e-11 Score=146.53 Aligned_cols=387 Identities=14% Similarity=0.155 Sum_probs=195.9
Q ss_pred HHHhhhcCccHHHHHHHHHHHHcc--cccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhh
Q 002083 114 TIQKDLKSDNYLIVCAALNAVCKL--INEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRL 191 (969)
Q Consensus 114 tLqKDL~s~N~~vralALr~Ls~I--~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL 191 (969)
-|++.|++++...+.-|+.-+-.+ ...++ ..+.+.|.+++.+++..+||-+.+++..+.+.+||.+.-.++.+.+-|
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL 95 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDC 95 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHc
Confidence 455555555544444433333211 11122 233444445555555555555555555555555554443444555555
Q ss_pred cCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHh-
Q 002083 192 CDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASE- 270 (969)
Q Consensus 192 ~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se- 270 (969)
.|.|+.|.+.|+..|..+. .++....+++.+.+.|. + ++|..+-+....+..+...+++..+
T Consensus 96 ~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~----d-----------~~~~VRk~A~~al~~i~~~~p~~~~~ 158 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLK----D-----------EDPYVRKTAAVCVAKLHDINAQMVED 158 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSS----C-----------SCHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcC----C-----------CChHHHHHHHHHHHHHHhhChhhccc
Confidence 5555555555555444332 22222222222222221 0 2444444444444433322222111
Q ss_pred -hhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCC-H-----HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 002083 271 -NMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYAN-P-----KLIESAADVIARFLKSDSHNLKYMGIDALGRLIKT 343 (969)
Q Consensus 271 -~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~-~-----~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~ 343 (969)
.+.+.|..+|.. .| ..|...|+.++..+..+ + .+...++..|.+.+...++-.+-..|+.+..+...
T Consensus 159 ~~~~~~l~~lL~d----~d--~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 159 QGFLDSLRDLIAD----SN--PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp HHHHHHHHHTTSC----SC--HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC
T ss_pred ccHHHHHHHHhCC----CC--hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC
Confidence 233444444431 11 36666777766665432 1 11222344455555556677777777777666655
Q ss_pred ChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccC-----CCcHHHHHHHHHH---HHhhcCChhhHHHHHHHHHHHhh
Q 002083 344 SPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTK-----SSNVEVIVDRMID---YMISINDNHYKTEIASRCVELAE 415 (969)
Q Consensus 344 ~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n-----~~Nv~~IV~eLl~---yl~~~~D~~~k~eli~~I~~lae 415 (969)
.+.........+..++.+.+..|+..|...+..+.+ ++-+..++..+.. ++.+ .|.++|--++.++..++.
T Consensus 233 ~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 233 DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 555566666778888999999999999999988763 4556655554443 4443 677888888888888887
Q ss_pred hcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHh
Q 002083 416 QFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVL 495 (969)
Q Consensus 416 kyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WIL 495 (969)
+++....-++.. ++....+- ..+-...++++.. ++++ +--..++..+.+++.+. ...+++.++|-|
T Consensus 312 ~~p~~~~~~~~~---~~~~~~d~--~~Ir~~al~~L~~-l~~~------~nv~~iv~~L~~~l~~~--d~~~r~~~v~aI 377 (591)
T 2vgl_B 312 KRPEILKQEIKV---FFVKYNDP--IYVKLEKLDIMIR-LASQ------ANIAQVLAELKEYATEV--DVDFVRKAVRAI 377 (591)
T ss_dssp HCCSTTTTCTTT---TSCCTTSC--HHHHHHHHHHHHH-TCCS------STHHHHHHHHHHHTTSS--CHHHHHHHHHHH
T ss_pred hChHHHHHHHHh---heeccCCh--HHHHHHHHHHHHH-HCCh------hhHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 654322111111 11111111 1122222233321 1111 11234666677777653 234567778888
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHh
Q 002083 496 GEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFE 542 (969)
Q Consensus 496 GEY~~~~~~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~ 542 (969)
|..+.... .....+++.|++.+. ...+.++..++.++..+..+.
T Consensus 378 ~~la~~~~-~~~~~~v~~Ll~ll~--~~~~~v~~e~i~~l~~ii~~~ 421 (591)
T 2vgl_B 378 GRCAIKVE-QSAERCVSTLLDLIQ--TKVNYVVQEAIVVIRDIFRKY 421 (591)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhCh-hHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHC
Confidence 88775321 112456666666654 335556666677777776543
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.42 E-value=3.2e-09 Score=131.70 Aligned_cols=490 Identities=10% Similarity=0.072 Sum_probs=278.5
Q ss_pred hHHHHHHhhcCCCcchhHHHHHHHHhhhccCchH---------HHHHHHHHHhhhcCccHHHHHHHHHHHHccccc----
Q 002083 74 GYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDL---------IILIVNTIQKDLKSDNYLIVCAALNAVCKLINE---- 140 (969)
Q Consensus 74 ~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dl---------llL~iNtLqKDL~s~N~~vralALr~Ls~I~~~---- 140 (969)
....+++++++.+...|..+..++..+++..++. +-.++..|.+-++++++.+|..|+++++.+...
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 5677788999999988998888887777654443 334667778888999999999999999987632
Q ss_pred --chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc
Q 002083 141 --ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 141 --el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
..++.+++.+.+++.|.++.||+.|+.|+.++...+|+.+. .+++.+.+++.|.|+.|...|+..+..++....
T Consensus 209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh
Confidence 23457788888999999999999999999999999987654 466677777899999999998887777764321
Q ss_pred --hhhHHHHHHHHHHHHHHH----------hccCCCCcCCC-CCCChhHH----HHHHHHHHHhCCCChHHHhhhHHHHH
Q 002083 215 --NSYKDLVISFVSILKQVA----------ERRLPKSYDYH-QMPAPFIQ----IRLLKILALLGSGDKQASENMYTVVG 277 (969)
Q Consensus 215 --~~~~~Lv~~lv~iLk~l~----------~~~lp~~y~y~-~v~~PWlQ----ikLLklL~~l~~~d~~~se~l~~iL~ 277 (969)
+..++.++.++..|...+ +.+. .+.+.- .....|.. ...|..|..... ......+.+.+.
T Consensus 289 ~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~-~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~~l~~~l~ 365 (852)
T 4fdd_A 289 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV-EGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLPHILPLLK 365 (852)
T ss_dssp HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc-ccccccccccccchHHHHHHHHHHHHHHhcc--HHHHHHHHHHHH
Confidence 111222223333332221 0110 000000 00023432 223333332221 122234455555
Q ss_pred HhHhccCCCCCCCchHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC-----hhH
Q 002083 278 DIFRKCDSSSNIGNAVLYECICCVSSIYANP-----KLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS-----PEI 347 (969)
Q Consensus 278 ~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~-----~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~-----P~l 347 (969)
..++.. ...+..+++.++..+.... ..+..++..|..++.+.++.+|+.++.+|.+++... ..+
T Consensus 366 ~~l~~~------~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 439 (852)
T 4fdd_A 366 ELLFHH------EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY 439 (852)
T ss_dssp HHHTCS------SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT
T ss_pred HHhcCC------CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 555532 2578889999988875432 234567788889999889999999999999888642 234
Q ss_pred HHHhHHhhccccCCCchHHHHHHHHHhhcccCC------CcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCc-
Q 002083 348 AEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKS------SNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS- 420 (969)
Q Consensus 348 ~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~------~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~- 420 (969)
+.+-...++.++.|++..+|..+...|..++.. .-+..|++.|+..+... +..-..-++.+|..++..-.+.
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~~~~~~~~ 518 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVGHHL 518 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhhhhh
Confidence 444456677788899999999998888777632 23567777777777643 2222333445555555322111
Q ss_pred -hHHHHHHHHHHH----hhhCccch--HHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhC-------CC-----
Q 002083 421 -NHWFIQTMNKVF----EHAGDLVN--IKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIG-------EP----- 481 (969)
Q Consensus 421 -~~W~Id~L~~ll----~~~gd~v~--~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~-------d~----- 481 (969)
..-|++.++..+ ..-.+... ..++. .+..|....|.....-.+.+-..++..+...+. ++
T Consensus 519 ~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~-~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~ 597 (852)
T 4fdd_A 519 NKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLE-CLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHH-HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCC
T ss_pred ccHHHHHHHHHHHHHHHHhcccccHHHHHHHH-HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCC
Confidence 122444443332 22111100 11111 122222222221111112222223333322221 11
Q ss_pred CCchhHHHHHHHHhccccCCCCCCChH-----HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHH
Q 002083 482 KLPSVFLQVICWVLGEYGTADGKVSAS-----YITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQ 556 (969)
Q Consensus 482 ~~~e~l~~~i~WILGEY~~~~~~~~~~-----~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~ 556 (969)
...+ ++..++|.+|......+....+ .++..+...+. .....||.....++..+...... ......+.+.
T Consensus 598 ~d~~-~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~--~~~~~l~~~l 672 (852)
T 4fdd_A 598 PDKD-FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTKACFQ--HVKPCIADFM 672 (852)
T ss_dssp CCTH-HHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHH
T ss_pred Ccch-HHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhC--CCChhHHHHHHHHHHHHHHHhhH--HHHHHHHHHH
Confidence 1122 4455667777665422211112 24555544432 23467887777666666543221 1112234455
Q ss_pred HHHHHHhcCCChhHHhHHHHHHH
Q 002083 557 SLIEELSASHSTDLQQRAYELEA 579 (969)
Q Consensus 557 ~lL~~~l~s~d~EVQqRA~Ey~~ 579 (969)
..+-+.+...++++|.-|.....
T Consensus 673 p~l~~~l~~~~~~v~~~a~~alg 695 (852)
T 4fdd_A 673 PILGTNLNPEFISVCNNATWAIG 695 (852)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHH
Confidence 55556666667888877766543
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.37 E-value=1.1e-09 Score=135.93 Aligned_cols=344 Identities=13% Similarity=0.171 Sum_probs=218.6
Q ss_pred HHHhhcCCCcchhHHHHHHHHhhhcc-----CchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc---cchHhhHHHH
Q 002083 78 AVKMTHDDNLVLKRTGYLAVTLFLNE-----DHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN---EETIPAVLPQ 149 (969)
Q Consensus 78 vIkl~sS~~~~~KRlgYLals~~~~~-----~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~---~el~~~l~~~ 149 (969)
++..+.+.+...|.++-+++...+.. +++..-.+-+.+.+-|.++++.+|..|-.+++.|.. +.--+.+++.
T Consensus 53 il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~ 132 (852)
T 4fdd_A 53 VLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPK 132 (852)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHH
T ss_pred HHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 33333566777888888888776643 345555666777777889999999888888887754 3456678999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhCCcc---------hhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHH
Q 002083 150 VVELLGHSKEAVRRKAIMALHRFYQKSPSS---------VQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDL 220 (969)
Q Consensus 150 V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~---------v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~L 220 (969)
+.+++.+.++.+|..|+.++.+++...|+. +..+++.+.+++.|.++.|..+|+.+|..++...++.+...
T Consensus 133 L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~ 212 (852)
T 4fdd_A 133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH 212 (852)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999999999988876 34577888888899999999999998887776555443333
Q ss_pred HHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC-----------------------CCChHHHhhhH----
Q 002083 221 VISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG-----------------------SGDKQASENMY---- 273 (969)
Q Consensus 221 v~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~-----------------------~~d~~~se~l~---- 273 (969)
++.++..|.+.... .++-.+...++.|..+. ..++.......
T Consensus 213 ~~~~l~~l~~~~~d-----------~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 213 IDSFIENLFALAGD-----------EEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWL 281 (852)
T ss_dssp HHHHHHHHHHHHTC-----------CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 33444433333221 13333333333333222 11221110000
Q ss_pred -----------------HHHHHhHhc------------cCC----CC--C-CCchHHHHHHHHHHhcCC--CHHHHHHHH
Q 002083 274 -----------------TVVGDIFRK------------CDS----SS--N-IGNAVLYECICCVSSIYA--NPKLIESAA 315 (969)
Q Consensus 274 -----------------~iL~~iL~~------------~~~----~~--N-i~~AVlyEaik~I~~l~~--~~~ll~~ai 315 (969)
.++..+++. .+. .. . ....|...++.++..+.. ...++....
T Consensus 282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~ 361 (852)
T 4fdd_A 282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHIL 361 (852)
T ss_dssp HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 111111111 010 00 0 112333333333322211 123344455
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHh----HHhhccccCCCchHHHHHHHHHhhcccC-------CCcHH
Q 002083 316 DVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQH----QLAVIDCLEDPDDTLKRKTFELLYKMTK-------SSNVE 384 (969)
Q Consensus 316 ~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h----~~~I~~cL~D~D~sIR~kaLdLL~~L~n-------~~Nv~ 384 (969)
..+..++.+.+..+|..++.+|..|+...++.+..| ...++.+++|++..+|..+...|..++. .....
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 441 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK 441 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 666777778889999999999999987665544333 3456778899999999999988887764 35577
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCc----hHHHHHHHHHHHh
Q 002083 385 VIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS----NHWFIQTMNKVFE 433 (969)
Q Consensus 385 ~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~----~~W~Id~L~~ll~ 433 (969)
.++..|++.+.+ .+...|..++.++..+++...+. ..-.+..|..++.
T Consensus 442 ~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 442 PLMTELLKRILD-SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS 493 (852)
T ss_dssp HHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHH
Confidence 888888888875 46788999999999888765433 3344444455553
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.33 E-value=2e-08 Score=123.57 Aligned_cols=483 Identities=12% Similarity=0.096 Sum_probs=278.1
Q ss_pred HHhhcCCCcchhHHHHHHHHhhhccCchHH----H-HHHHHHHhhhcCccHHHHHHHHHHHHcccccc------------
Q 002083 79 VKMTHDDNLVLKRTGYLAVTLFLNEDHDLI----I-LIVNTIQKDLKSDNYLIVCAALNAVCKLINEE------------ 141 (969)
Q Consensus 79 Ikl~sS~~~~~KRlgYLals~~~~~~~dll----l-L~iNtLqKDL~s~N~~vralALr~Ls~I~~~e------------ 141 (969)
.+++.+.+...|+.++-++..++...++.+ . -++..+.+-+.+.++.+|..|+.++..+....
T Consensus 223 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 345667788888888888877776554322 1 33455556667889999999998887765321
Q ss_pred ---------------hHhhHHHHHHHhcC-------CCChHHHHHHHHHHHHHHhhCCc-chhhHHHHHHHhhcCCChhH
Q 002083 142 ---------------TIPAVLPQVVELLG-------HSKEAVRRKAIMALHRFYQKSPS-SVQHLVSNFRKRLCDNDPGV 198 (969)
Q Consensus 142 ---------------l~~~l~~~V~~lL~-------d~~pyVRKkA~lal~kiy~~~Pe-~v~~l~~~l~~lL~D~D~~V 198 (969)
..+.+++.+.+.+. +.+..+|+.|+.++..+....++ .++.+++.+...|.|.++.|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~ 382 (876)
T 1qgr_A 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382 (876)
T ss_dssp HSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHH
Confidence 12556677777775 34678999999999999887764 45678888888999999999
Q ss_pred HHHHHHHHHHhhhhCc-hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH---HHhhhHH
Q 002083 199 MGATLCPLFDLITVDV-NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ---ASENMYT 274 (969)
Q Consensus 199 v~aAl~~L~ei~~~~p-~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~---~se~l~~ 274 (969)
..+|+.+|..+...-. +.+.+..+.++..|...+.. +++..+...+..|..|+..-+. ....+..
T Consensus 383 r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-----------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~ 451 (876)
T 1qgr_A 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-----------PSVVVRDTAAWTVGRICELLPEAAINDVYLAP 451 (876)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-----------SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHHHHhCchhcccHHHHHH
Confidence 9999988887765332 33334444455544443321 3567777777777776543211 1122333
Q ss_pred HHHHhHhccCCCCCCCchHHHHHHHHHHhcCCC-------------------HHHHHHHHHHHHHHhcCC---ChhHHHH
Q 002083 275 VVGDIFRKCDSSSNIGNAVLYECICCVSSIYAN-------------------PKLIESAADVIARFLKSD---SHNLKYM 332 (969)
Q Consensus 275 iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~-------------------~~ll~~ai~~L~~fL~s~---d~NlrYv 332 (969)
++..+++.... + .-|...|+.++..+... ...+...+..|..++... +.++|..
T Consensus 452 ~l~~l~~~l~~--~--~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 452 LLQCLIEGLSA--E--PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp HHHHHHHHTTS--C--HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHcC--C--HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 44444443221 1 35666666666443210 123456677777777653 4689999
Q ss_pred HHHHHHHHHhhChhHHHHhHH----hhcccc-----------CCCc----hHHHHHHHHHhhcccCCCc-------HHHH
Q 002083 333 GIDALGRLIKTSPEIAEQHQL----AVIDCL-----------EDPD----DTLKRKTFELLYKMTKSSN-------VEVI 386 (969)
Q Consensus 333 aL~~L~~I~~~~P~l~~~h~~----~I~~cL-----------~D~D----~sIR~kaLdLL~~L~n~~N-------v~~I 386 (969)
+++++..|+...+.-+.++.. .++..+ .+.| ..+|..++..+..++..-. ...|
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 607 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV 607 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence 999999998765432222222 222222 3444 3467777777776665432 3456
Q ss_pred HHHHHHHHhhcCC-hhhHHHHHHHHHHHhhh----cCCchHHHHHHHHHHHhhh-CccchHHHHHHHHHHHhcccCCCcc
Q 002083 387 VDRMIDYMISIND-NHYKTEIASRCVELAEQ----FAPSNHWFIQTMNKVFEHA-GDLVNIKVAHNLMRLIAEGFGEDDD 460 (969)
Q Consensus 387 V~eLl~yl~~~~D-~~~k~eli~~I~~laek----yap~~~W~Id~L~~ll~~~-gd~v~~ev~~~li~lI~~~~g~~~~ 460 (969)
+..|+.-+....+ ..++..++..|..++.. |.|...-++..+..++... ...+....+..+-. |....|.
T Consensus 608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~-l~~~~~~--- 683 (876)
T 1qgr_A 608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD-LCRALQS--- 683 (876)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH-HHHHHGG---
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-HHHHHHH---
Confidence 6666666654321 25788888888887764 4444444556666666543 22233333222222 2222221
Q ss_pred ccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCC-C--ChHHHHHHHHHHHhhcC--Cc-------HHHH
Q 002083 461 NADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGK-V--SASYITGKLCDVAEAYS--ND-------ETIK 528 (969)
Q Consensus 461 ~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~-~--~~~~Il~~L~~~~~~~~--e~-------~~Vk 528 (969)
.. ...-..++..+.+.+.+.......+..++|++|+.+...+. . -.+.++..+...+.... .+ ..+|
T Consensus 684 ~~-~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r 762 (876)
T 1qgr_A 684 NI-IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELR 762 (876)
T ss_dssp GG-HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH
T ss_pred hh-hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 11 12234567777788876433334567888999887642111 1 11234444444332110 01 2577
Q ss_pred HHHHHHHHHHHHHhhhc--------cccCCCcHHHHHHHHHHhcCC--ChhHHhHHHHHHHHh
Q 002083 529 AYAITALMKIYAFEIAA--------GRKVDMLPECQSLIEELSASH--STDLQQRAYELEAVT 581 (969)
Q Consensus 529 ~~ILtAl~KL~~~~~~~--------~~~~~~~~~~~~lL~~~l~s~--d~EVQqRA~Ey~~LL 581 (969)
..++.++.-++...... +.-....+.+..++.....+. +.+||..|...+.-|
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l 825 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDL 825 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 77777776665432110 001123355666666666655 788999998876654
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.32 E-value=1.2e-09 Score=140.68 Aligned_cols=333 Identities=15% Similarity=0.186 Sum_probs=217.7
Q ss_pred cchHHHHHHhhcCCCcchhHHHHHHHHhhhccC-----chHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc---cchH
Q 002083 72 SFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNED-----HDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN---EETI 143 (969)
Q Consensus 72 sf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~-----~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~---~el~ 143 (969)
.+.+..++.-+.++|-..|+++--.+...+..+ ++..--++..+.+-|.|+|+.+|..|+.+|+.+.. +...
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 455667777788888888887766666555432 23333556667788889999999999999887643 3456
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcc----------hhhHHHHHHHhhcC-CChhHHHHHHHHHHHhhhh
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSS----------VQHLVSNFRKRLCD-NDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~----------v~~l~~~l~~lL~D-~D~~Vv~aAl~~L~ei~~~ 212 (969)
+.+.+.+.+.|.|+++.||..|+.|+..+....+.. .+.+++.+.+.+.| .++.+...|+.+|.+++..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999876543 56788888888885 8889999999999999876
Q ss_pred CchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH-HHhhhHHHHHHhHhccCCCCCCCc
Q 002083 213 DVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ-ASENMYTVVGDIFRKCDSSSNIGN 291 (969)
Q Consensus 213 ~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~-~se~l~~iL~~iL~~~~~~~Ni~~ 291 (969)
.++.+.+..+.++..|...+. -++++.+...++.|..+...-+. ....+.+.|...|...+.. .. .
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~-----------~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~-~~-r 231 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLT-----------SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSM-ST-T 231 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGG-----------CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSS-CS-C
T ss_pred hHhHHHHHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCch-hH-H
Confidence 554333334445555444332 14689999999999888764321 1223334444445433211 11 1
Q ss_pred hHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHh----hccccC-CC--
Q 002083 292 AVLYECICCVSSIYAN--PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLA----VIDCLE-DP-- 362 (969)
Q Consensus 292 AVlyEaik~I~~l~~~--~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~----I~~cL~-D~-- 362 (969)
.-.++|+..+....+. ...+...+..+...+.+.++++|-.++..+..++...+.-+.+|... ++.++. |+
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~ 311 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNY 311 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCC
Confidence 2235565555443221 01223456677777778889999999999999998876654444333 333332 10
Q ss_pred ----------------------------------chHHHHHHHHHhhcccCC--CcHHHHHHHHHHH----HhhcCChhh
Q 002083 363 ----------------------------------DDTLKRKTFELLYKMTKS--SNVEVIVDRMIDY----MISINDNHY 402 (969)
Q Consensus 363 ----------------------------------D~sIR~kaLdLL~~L~n~--~Nv~~IV~eLl~y----l~~~~D~~~ 402 (969)
...+|+.+++.|..++.. +.+..++.+++.. +.+ .+..+
T Consensus 312 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-~~~~V 390 (1230)
T 1u6g_C 312 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE-REENV 390 (1230)
T ss_dssp ---------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC-SSSHH
T ss_pred CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC-CchHH
Confidence 124688888888877652 2344555444444 433 34678
Q ss_pred HHHHHHHHHHHhhhcC
Q 002083 403 KTEIASRCVELAEQFA 418 (969)
Q Consensus 403 k~eli~~I~~laekya 418 (969)
|..++.++..++..+.
T Consensus 391 r~~a~~~l~~l~~~~~ 406 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTR 406 (1230)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8899988888877653
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.29 E-value=1.2e-07 Score=116.27 Aligned_cols=481 Identities=12% Similarity=0.081 Sum_probs=272.6
Q ss_pred hHHHHHHhhcCC-CcchhHHHHHHHHhhhcc---C----chHHHHHHHHHHhhhcCc--cHHHHHHHHHHHHccc---cc
Q 002083 74 GYIHAVKMTHDD-NLVLKRTGYLAVTLFLNE---D----HDLIILIVNTIQKDLKSD--NYLIVCAALNAVCKLI---NE 140 (969)
Q Consensus 74 ~~~~vIkl~sS~-~~~~KRlgYLals~~~~~---~----~dlllL~iNtLqKDL~s~--N~~vralALr~Ls~I~---~~ 140 (969)
....++.++.++ +...|..+...+..+... + ....--+...+.+-+.++ ++.+|..|+++++.+. ..
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 214 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456677788887 777777766666555442 1 123334555666667777 8999999999998752 11
Q ss_pred ch-----HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 141 ET-----IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 141 el-----~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
.+ .+.+++.+.+.+.+.++-||+.|+.++.++...+|+.+. .+++.+...+.|.|..|...|+..+..++
T Consensus 215 ~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 11 245777888889999999999999999999999887654 45555566778999999998888777665
Q ss_pred hhC-----------------chhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhH-HHHHHHHHHHhCCCC-hHHHhh
Q 002083 211 TVD-----------------VNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFI-QIRLLKILALLGSGD-KQASEN 271 (969)
Q Consensus 211 ~~~-----------------p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWl-QikLLklL~~l~~~d-~~~se~ 271 (969)
... +...+..+..++..|-..+......+. .+.|. .....+.|..+...- ......
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~-----d~~~~~r~~a~~~L~~l~~~~~~~~~~~ 369 (861)
T 2bpt_A 295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE-----DDDWNVSMSAGACLQLFAQNCGNHILEP 369 (861)
T ss_dssp HHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-C-----CCCCHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccc-----cccCcHHHHHHHHHHHHHHHccHhHHHH
Confidence 431 111222223333333222211000000 12342 223344443332210 112233
Q ss_pred hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCC--HH----HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC-
Q 002083 272 MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYAN--PK----LIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS- 344 (969)
Q Consensus 272 l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~--~~----ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~- 344 (969)
+.+.+...++. . ...+...++.++..+... ++ .+..++..|...+.+.++.+|..++..+.+++...
T Consensus 370 l~~~l~~~l~~----~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 370 VLEFVEQNITA----D--NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHHTTC----S--SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCC----C--ChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 44444444442 2 246777788888777543 22 34456677778888888999999999999888652
Q ss_pred -----hhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCC----------CcHHHHHHHHHHHHhhc-CChhhHHHHHH
Q 002083 345 -----PEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKS----------SNVEVIVDRMIDYMISI-NDNHYKTEIAS 408 (969)
Q Consensus 345 -----P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~----------~Nv~~IV~eLl~yl~~~-~D~~~k~eli~ 408 (969)
+.++..-...++.++.|+ ..+|..+...|..++.. .-+..|++.|+..+.+. .+...|..++.
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 334555556677788886 78888887777665542 34677888888887642 22578888999
Q ss_pred HHHHHhhhcCCchHHHHHHH----HHHHhhh--------C----c---cchHHHHHHHHHHHhcccCCCccccchhHHHH
Q 002083 409 RCVELAEQFAPSNHWFIQTM----NKVFEHA--------G----D---LVNIKVAHNLMRLIAEGFGEDDDNADSQLRSS 469 (969)
Q Consensus 409 ~I~~laekyap~~~W~Id~L----~~ll~~~--------g----d---~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~ 469 (969)
+++.++........-|+..+ ++.+... . + .+...+...+.. |.+..|.+ . ......
T Consensus 523 al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~---~-~~~~~~ 597 (861)
T 2bpt_A 523 ALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA-VIRKSPSS---V-EPVADM 597 (861)
T ss_dssp HHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH-HHHHCGGG---T-GGGHHH
T ss_pred HHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH-HHHHhhhh---h-HHHHHH
Confidence 99999887665554444432 2322211 0 0 011112222222 22233321 1 123345
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCC-C--ChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcc
Q 002083 470 AVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGK-V--SASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAG 546 (969)
Q Consensus 470 av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~-~--~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~ 546 (969)
++..+...+.+.... .++..++|.+|......+. . -.+.++..+...++ .....+|...+.++..+.... |
T Consensus 598 l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~---~ 671 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN--QVDSPVSITAVGFIADISNSL---E 671 (861)
T ss_dssp HHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHHHHT---G
T ss_pred HHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHh---c
Confidence 666677777654310 1233334444433221100 0 01234555555543 234567888777776665331 1
Q ss_pred ccCCCcH---HHHHHHHHHhcCC--ChhHHhHHHHHHH
Q 002083 547 RKVDMLP---ECQSLIEELSASH--STDLQQRAYELEA 579 (969)
Q Consensus 547 ~~~~~~~---~~~~lL~~~l~s~--d~EVQqRA~Ey~~ 579 (969)
. ++.+ .+...+-..+.+. +.++|+.|...+.
T Consensus 672 ~--~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 672 E--DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp G--GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred h--hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 1 2222 3334444444444 4889998877554
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.27 E-value=2.6e-09 Score=123.92 Aligned_cols=438 Identities=13% Similarity=0.109 Sum_probs=258.5
Q ss_pred chHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccch-----H--hhHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhC
Q 002083 105 HDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEET-----I--PAVLPQVVELLGH-SKEAVRRKAIMALHRFYQKS 176 (969)
Q Consensus 105 ~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el-----~--~~l~~~V~~lL~d-~~pyVRKkA~lal~kiy~~~ 176 (969)
+++..-++..|.+-|++.++.+|..|+.+|+++...+- + +..++.+.++|.+ .++.+|+.|+.++.++...
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~- 90 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH- 90 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-
Confidence 33444456777777889999999999999998764321 1 2467778888864 5899999999999997653
Q ss_pred Ccchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh-----HHHHHHHHHHHHHHHhccCCCCcCCCCCC
Q 002083 177 PSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY-----KDLVISFVSILKQVAERRLPKSYDYHQMP 246 (969)
Q Consensus 177 Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~-----~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~ 246 (969)
++... ..++.|.++|.+.|+.|...|+.+|..++..+...- ...+|.++++|+. +
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~---------------~ 155 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---------------T 155 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC---------------C
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc---------------C
Confidence 33221 367888899999999999999999999887654322 2234455554431 2
Q ss_pred ChhHHHHHHHHHHHhCCCChHHHhh-----hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHH-----HHHH
Q 002083 247 APFIQIRLLKILALLGSGDKQASEN-----MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIE-----SAAD 316 (969)
Q Consensus 247 ~PWlQikLLklL~~l~~~d~~~se~-----l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~-----~ai~ 316 (969)
++-.+......|..++..++..... ..+.|..+++..+ ...+...+.+++..+..+++... .++.
T Consensus 156 ~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~ 230 (529)
T 1jdh_A 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-----YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 230 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-----hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHH
Confidence 4455666667777777655443222 2345556666432 13566667777777655443322 3577
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhChh--HHHHhHHhhccccCCCchHHHHHHHHHhhcccCCC--cHHH-----HH
Q 002083 317 VIARFLKSDSHNLKYMGIDALGRLIKTSPE--IAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSS--NVEV-----IV 387 (969)
Q Consensus 317 ~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~--l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~--Nv~~-----IV 387 (969)
.|..++.+.++.++.-++..|..|+...+. ........++.+|.++|..+|..+...|..++..+ |... .+
T Consensus 231 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 310 (529)
T 1jdh_A 231 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310 (529)
T ss_dssp HHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Confidence 888889888899999999999999876542 22344556777888999999999999999998753 4443 35
Q ss_pred HHHHHHHhhcCC-hhhHHHHHHHHHHHhhhcCCchHHH--------HHHHHHHHhhhCc-cchHHHHHHHHHHHhcccCC
Q 002083 388 DRMIDYMISIND-NHYKTEIASRCVELAEQFAPSNHWF--------IQTMNKVFEHAGD-LVNIKVAHNLMRLIAEGFGE 457 (969)
Q Consensus 388 ~eLl~yl~~~~D-~~~k~eli~~I~~laekyap~~~W~--------Id~L~~ll~~~gd-~v~~ev~~~li~lI~~~~g~ 457 (969)
+.|++.+.+..+ ...+..++..++.++...+.+..|. +..|.+++....+ .+..+.+..+.+ +..+
T Consensus 311 ~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~n-l~~~--- 386 (529)
T 1jdh_A 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-LALC--- 386 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH-HTTS---
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHH-HhcC---
Confidence 667777765333 6788889999998876533332232 3445555544332 233333322222 2211
Q ss_pred CccccchhH-HHHHHHHHHHHhCCCCCchhHHHHHHHHhcc--ccCCCCCCChHHH------------------------
Q 002083 458 DDDNADSQL-RSSAVESYLRIIGEPKLPSVFLQVICWVLGE--YGTADGKVSASYI------------------------ 510 (969)
Q Consensus 458 ~~~~~~p~l-r~~av~~l~~lL~d~~~~e~l~~~i~WILGE--Y~~~~~~~~~~~I------------------------ 510 (969)
.... ..+ ...++..+++++.+.. ++ .++.++|.++. +... ...+.+
T Consensus 387 -~~~~-~~~~~~~~i~~L~~ll~~~~-~~-v~~~a~~~l~n~~~~~~---~~~~~i~~~~~~al~~L~~~~~~~~~l~~~ 459 (529)
T 1jdh_A 387 -PANH-APLREQGAIPRLVQLLVRAH-QD-TQRRTSMGGTQQQFVEG---VRMEEIVEGCTGALHILARDVHNRIVIRGL 459 (529)
T ss_dssp -GGGH-HHHHHTTHHHHHHHHHHHHH-HH-HC-----------CBTT---BCHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred -hhhh-HHHHHcCCHHHHHHHHHHHh-HH-HHHHHhcccCchhhhcc---ccHHHHHHHHHHHHHHHhcCchHHHHHhcc
Confidence 1111 112 2235666667665321 22 23455777765 3221 011221
Q ss_pred --HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCc--HHHHHHHHHHhcCCChhHHhHHHHHHHH
Q 002083 511 --TGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDML--PECQSLIEELSASHSTDLQQRAYELEAV 580 (969)
Q Consensus 511 --l~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~--~~~~~lL~~~l~s~d~EVQqRA~Ey~~L 580 (969)
+..|+.++. ...+.++.....++..+....... ... ......|..++.+.|.+||++|...+.-
T Consensus 460 ~~v~~l~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~----~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 460 NTIPLFVQLLY--SPIENIQRVAAGVLCELAQDKEAA----EAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527 (529)
T ss_dssp TCHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSHHHH----HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHc--CCchHHHHHHHHHHHHHhcCHHHH----HHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 122333322 344667776666666553110000 000 1234667788889999999999886653
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.27 E-value=1.8e-09 Score=133.39 Aligned_cols=475 Identities=13% Similarity=0.101 Sum_probs=272.5
Q ss_pred hHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccc-----h--HhhH
Q 002083 74 GYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEE-----T--IPAV 146 (969)
Q Consensus 74 ~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~e-----l--~~~l 146 (969)
+...+++.+++++...|+.. +.+..+. .+.++..=++..|.+-|.+.++.+|..|+.+|++|...+ + .+.+
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a-~~~l~~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAV-VNLINYQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ----------CCSCHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred cHHHHHHHhcCccHHHHHHH-HHHHHhh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 45677888888776555432 2221222 223455556777778888999999999999999886532 1 2356
Q ss_pred HHHHHHhcCC-CChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH--
Q 002083 147 LPQVVELLGH-SKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK-- 218 (969)
Q Consensus 147 ~~~V~~lL~d-~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~-- 218 (969)
++.+.+.|.+ .++.+|+.|+.+|.++... ++... ..++.|.++|.+.++.|...|+.+|..++..+...-.
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 7777888864 4899999999999997653 33211 3678888999999999999999999999876543211
Q ss_pred ---HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-----hHHHHHHhHhccCCCCCCC
Q 002083 219 ---DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-----MYTVVGDIFRKCDSSSNIG 290 (969)
Q Consensus 219 ---~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-----l~~iL~~iL~~~~~~~Ni~ 290 (969)
..++.++.+|+. .++-.+...+..|..++..++..... ..+.|..+++..+ .
T Consensus 273 ~~~g~v~~Lv~lL~~---------------~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-----~ 332 (780)
T 2z6g_A 273 RLAGGLQKMVALLNK---------------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-----Y 332 (780)
T ss_dssp HHTTHHHHHHHGGGC---------------CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-----C
T ss_pred HHcCCHHHHHHHHhc---------------CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-----H
Confidence 234455555431 13334555566666666544433222 2345556666321 1
Q ss_pred chHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhH--HHHhHHhhccccCCCc
Q 002083 291 NAVLYECICCVSSIYANPKLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEI--AEQHQLAVIDCLEDPD 363 (969)
Q Consensus 291 ~AVlyEaik~I~~l~~~~~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l--~~~h~~~I~~cL~D~D 363 (969)
..+...++.++..+...+.... .++..|..++.+.+..++.-++..|..|+...+.. +......++.+|+++|
T Consensus 333 ~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d 412 (780)
T 2z6g_A 333 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 412 (780)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC
Confidence 2344455666655543332222 25678888898888889999999999998765432 2334456777788999
Q ss_pred hHHHHHHHHHhhcccCCC--cHH-----HHHHHHHHHHhhcCC-hhhHHHHHHHHHHHhhhcCCc--hHHH------HHH
Q 002083 364 DTLKRKTFELLYKMTKSS--NVE-----VIVDRMIDYMISIND-NHYKTEIASRCVELAEQFAPS--NHWF------IQT 427 (969)
Q Consensus 364 ~sIR~kaLdLL~~L~n~~--Nv~-----~IV~eLl~yl~~~~D-~~~k~eli~~I~~laekyap~--~~W~------Id~ 427 (969)
..+|..++.+|..|+... |.. ..+..|++.+.+..+ ...+..++..++.|+...... ..|. +..
T Consensus 413 ~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~ 492 (780)
T 2z6g_A 413 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPV 492 (780)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHH
Confidence 999999999999998754 332 246677777765333 378899999999998654321 1222 455
Q ss_pred HHHHHhhhCc-cchHHHHHHHHHHHhcccCCCccccchhHH-HHHHHHHHHHhCCCC--------------------Cch
Q 002083 428 MNKVFEHAGD-LVNIKVAHNLMRLIAEGFGEDDDNADSQLR-SSAVESYLRIIGEPK--------------------LPS 485 (969)
Q Consensus 428 L~~ll~~~gd-~v~~ev~~~li~lI~~~~g~~~~~~~p~lr-~~av~~l~~lL~d~~--------------------~~e 485 (969)
|.+++....+ .+..+.+..+.++.. + .... ..+. ..++..++++|.+.. .++
T Consensus 493 L~~lL~~~~~~~v~~~A~~aL~nLa~-~----~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~ 566 (780)
T 2z6g_A 493 VVKLLHPPSHWPLIKATVGLIRNLAL-C----PANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 566 (780)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHHS-S----HHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHhc-C----HHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChH
Confidence 6666654433 344444333333221 1 0001 1111 224555666654311 011
Q ss_pred hHHHHHHHHhccccCCCCC---CChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCc--HHHHHHHH
Q 002083 486 VFLQVICWVLGEYGTADGK---VSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDML--PECQSLIE 560 (969)
Q Consensus 486 ~l~~~i~WILGEY~~~~~~---~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~--~~~~~lL~ 560 (969)
.++..++.+|+..+..... .....++..|+.++. ..++.++...+.++..+....... ... ...+..|.
T Consensus 567 ~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~~~----~~i~~~g~i~~L~ 640 (780)
T 2z6g_A 567 EIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELAQDKEAA----EAIEAEGATAPLT 640 (780)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGG--CSCHHHHHHHHHHHHHHHTSHHHH----HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCHHHH----HHHHHCCCHHHHH
Confidence 1222333344433211000 000112334444443 356778888888887774211000 000 11345667
Q ss_pred HHhcCCChhHHhHHHHHHHHhcC
Q 002083 561 ELSASHSTDLQQRAYELEAVTGL 583 (969)
Q Consensus 561 ~~l~s~d~EVQqRA~Ey~~LL~~ 583 (969)
.++.+.+.+||..|...+.-+..
T Consensus 641 ~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 641 ELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHc
Confidence 78889999999999886655543
No 16
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.26 E-value=5.3e-10 Score=119.91 Aligned_cols=252 Identities=8% Similarity=0.045 Sum_probs=147.1
Q ss_pred HHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHH-
Q 002083 111 IVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRK- 189 (969)
Q Consensus 111 ~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~- 189 (969)
.++.|.+.|.++|+.+|..|+++|+.+..++ ..+.+.++|.|+++.||..|+.++.++.. .++.+..+++.+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQD----AVRLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCEDNVFNILNNM 98 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCch----HHHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccchHHHHHHHHH
Confidence 4678888999999999999999999998654 55677889999999999999999988753 33445566666663
Q ss_pred hhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHH
Q 002083 190 RLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQAS 269 (969)
Q Consensus 190 lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~s 269 (969)
++.|.|+.|..+++.+|..+...++.....+++.++..|. -++|+.+...+..|..++..
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---------------d~~~~vR~~a~~aL~~~~~~----- 158 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---------------DKSTNVRRATAFAISVINDK----- 158 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---------------CSCHHHHHHHHHHHHTC--------
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---------------CCCHHHHHHHHHHHHhcCCH-----
Confidence 5789999999999888887765444322233333333321 13566666666666555431
Q ss_pred hhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHH
Q 002083 270 ENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAE 349 (969)
Q Consensus 270 e~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~ 349 (969)
...+.|...++.. ...|...++..+..+.... ..++..|..++.+.++.+|..++..|..+. ++..+
T Consensus 159 -~~~~~L~~~l~d~------~~~vr~~a~~aL~~~~~~~---~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--~~~~~- 225 (280)
T 1oyz_A 159 -ATIPLLINLLKDP------NGDVRNWAAFAININKYDN---SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--DKRVL- 225 (280)
T ss_dssp -CCHHHHHHHHTCS------SHHHHHHHHHHHHHHTCCC---HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--CGGGH-
T ss_pred -HHHHHHHHHHcCC------CHHHHHHHHHHHHhhccCc---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CHhhH-
Confidence 1223333444321 1245555555555443211 123344555555555566666665555544 22222
Q ss_pred HhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 002083 350 QHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASR 409 (969)
Q Consensus 350 ~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~ 409 (969)
..++.++.|++ +|..+++.|..+.++ .++..|.+.+.+..|.+++.+++..
T Consensus 226 ---~~L~~~l~d~~--vr~~a~~aL~~i~~~----~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 226 ---SVLCDELKKNT--VYDDIIEAAGELGDK----TLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp ---HHHHHHHTSSS--CCHHHHHHHHHHCCG----GGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred ---HHHHHHhcCcc--HHHHHHHHHHhcCch----hhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 23344445543 555555555555543 2334444444443444444444443
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.25 E-value=6.5e-08 Score=119.04 Aligned_cols=455 Identities=10% Similarity=0.104 Sum_probs=261.9
Q ss_pred cCchHHHHHHHHHHhhhcCc--cHHHHHHHHHHHHcccc-------cchHhhHHHHHHHhcCCC--ChHHHHHHHHHHHH
Q 002083 103 EDHDLIILIVNTIQKDLKSD--NYLIVCAALNAVCKLIN-------EETIPAVLPQVVELLGHS--KEAVRRKAIMALHR 171 (969)
Q Consensus 103 ~~~dlllL~iNtLqKDL~s~--N~~vralALr~Ls~I~~-------~el~~~l~~~V~~lL~d~--~pyVRKkA~lal~k 171 (969)
.-++++-.+. .-+.++ ++.+|-.||++++.+.. ....+.+++.+.+++.+. ++.||..|+-|+..
T Consensus 125 ~w~~ll~~l~----~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~ 200 (876)
T 1qgr_A 125 QWPELIPQLV----ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200 (876)
T ss_dssp CCTTHHHHHH----HHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH----HHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 3456554444 344567 88999999999988753 234567777888888887 78999999999999
Q ss_pred HHhhCCcch------hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHH-HHHHHHHHHHhccCCCCcCCCC
Q 002083 172 FYQKSPSSV------QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVI-SFVSILKQVAERRLPKSYDYHQ 244 (969)
Q Consensus 172 iy~~~Pe~v------~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~-~lv~iLk~l~~~~lp~~y~y~~ 244 (969)
+....++.+ ..+++.+..++.|.|..|..+++..|..++...++.+.+.+. .++.++......
T Consensus 201 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---------- 270 (876)
T 1qgr_A 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS---------- 270 (876)
T ss_dssp HGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----------
Confidence 876433222 135677777788889999988888888888777766555554 555554443221
Q ss_pred CCChhHHHHHHHHHHHhCCCC----------------------hH---HHhhhHHHHHHhHhccCCC-CCCCchHHHHHH
Q 002083 245 MPAPFIQIRLLKILALLGSGD----------------------KQ---ASENMYTVVGDIFRKCDSS-SNIGNAVLYECI 298 (969)
Q Consensus 245 v~~PWlQikLLklL~~l~~~d----------------------~~---~se~l~~iL~~iL~~~~~~-~Ni~~AVlyEai 298 (969)
.++-.....++++..++... .. ..+.+...+...+...+.. ......+...|+
T Consensus 271 -~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~ 349 (876)
T 1qgr_A 271 -DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG 349 (876)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHH
Confidence 23444555555554443210 00 0122333333333322100 001234555555
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh-hHHHHh----HHhhccccCCCchHHHHHHH
Q 002083 299 CCVSSIYA--NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP-EIAEQH----QLAVIDCLEDPDDTLKRKTF 371 (969)
Q Consensus 299 k~I~~l~~--~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P-~l~~~h----~~~I~~cL~D~D~sIR~kaL 371 (969)
.++..+.. ...++...+..+...+.+.+.++|+.++..|..|+...+ +.+.+| ...++.+++|++..+|..++
T Consensus 350 ~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 350 VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 55543321 124455566777778888889999999999999987553 544444 34566778999999999999
Q ss_pred HHhhcccC--------CCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhc------------------CCchHHHH
Q 002083 372 ELLYKMTK--------SSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQF------------------APSNHWFI 425 (969)
Q Consensus 372 dLL~~L~n--------~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laeky------------------ap~~~W~I 425 (969)
..|..++. ...+..+++.|+..+.+ +..++..++.++..+++.+ .|...-.+
T Consensus 430 ~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il 507 (876)
T 1qgr_A 430 WTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIV 507 (876)
T ss_dssp HHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHH
T ss_pred HHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHH
Confidence 98887764 36788999999988865 3677888888888777653 33334444
Q ss_pred HHHHHHHhhhC---ccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCC----------CCCc---hhHHH
Q 002083 426 QTMNKVFEHAG---DLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGE----------PKLP---SVFLQ 489 (969)
Q Consensus 426 d~L~~ll~~~g---d~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d----------~~~~---e~l~~ 489 (969)
..|.+++.... ..+...+...+-. +....|.+. ...-...+..+.+.+.. ...+ ..++.
T Consensus 508 ~~L~~~l~~~~~~~~~~r~~~~~~l~~-l~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~ 582 (876)
T 1qgr_A 508 QKLLETTDRPDGHQNNLRSSAYESLME-IVKNSAKDC----YPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQS 582 (876)
T ss_dssp HHHHHHTTSCSSCSTTHHHHHHHHHHH-HHHTCCSTT----HHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchhhHHHHHHHHHHH-HHHHCchhh----HHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHH
Confidence 55555543321 1222223332222 333333221 11222233333332221 1111 12344
Q ss_pred HHHHHhccccCCCC-C---CChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCcHHHHHHHHHHhcC
Q 002083 490 VICWVLGEYGTADG-K---VSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSAS 565 (969)
Q Consensus 490 ~i~WILGEY~~~~~-~---~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~~~~~~lL~~~l~s 565 (969)
.++++++......+ . .-.+.++..+...++.......++..++.++..+...... ......+.+...+...+.+
T Consensus 583 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG--EFLKYMEAFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHcC
Confidence 56777776654322 0 1123455555554432210125777777777776643211 1112334555566666665
Q ss_pred C-ChhHHhHHHHHHHHh
Q 002083 566 H-STDLQQRAYELEAVT 581 (969)
Q Consensus 566 ~-d~EVQqRA~Ey~~LL 581 (969)
. +.+||+.|...+.-+
T Consensus 661 ~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 661 YAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 5 789999988765443
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.24 E-value=2.2e-09 Score=121.69 Aligned_cols=327 Identities=13% Similarity=0.166 Sum_probs=223.9
Q ss_pred HHHHHHhhhcCccHHHHHHHHHHHHccc----ccc---hHh--hHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhCCcch
Q 002083 111 IVNTIQKDLKSDNYLIVCAALNAVCKLI----NEE---TIP--AVLPQVVELLGHS-KEAVRRKAIMALHRFYQKSPSSV 180 (969)
Q Consensus 111 ~iNtLqKDL~s~N~~vralALr~Ls~I~----~~e---l~~--~l~~~V~~lL~d~-~pyVRKkA~lal~kiy~~~Pe~v 180 (969)
++..|.+.|+++++.+|-.|+..+.++. ++. ++. .+++.+.++|.+. ++.||..|+.++.++...+++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4556666777888888888888888763 222 222 5788889999988 89999999999999998766543
Q ss_pred h-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH-----HHHHHHHHHHHHHHhccCCCCcCCCCCCChhH
Q 002083 181 Q-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK-----DLVISFVSILKQVAERRLPKSYDYHQMPAPFI 250 (969)
Q Consensus 181 ~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~-----~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWl 250 (969)
. ..++.|.++|.+.|+.|...|+.+|..+...++..-. ..++.++.+|.. -.++-.
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--------------~~~~~v 166 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--------------QNRLTM 166 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--------------CCCHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--------------CCCHHH
Confidence 2 4788899999999999999999999888876543211 234444444421 135677
Q ss_pred HHHHHHHHHHhCCCC-hH----HHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCC-HHHHH-----HHHHHHH
Q 002083 251 QIRLLKILALLGSGD-KQ----ASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYAN-PKLIE-----SAADVIA 319 (969)
Q Consensus 251 QikLLklL~~l~~~d-~~----~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~-~~ll~-----~ai~~L~ 319 (969)
+...+..|..++... +. ......+.|..+++.. ...|...++.++.++... ++... .++..|.
T Consensus 167 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 240 (450)
T 2jdq_A 167 TRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS------DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240 (450)
T ss_dssp HHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC------CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC------CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHH
Confidence 888888888887543 21 1234556666666532 247888888888887653 22221 3677888
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhhChhHHH-----HhHHhhccccCCCchHHHHHHHHHhhcccC--CCcHH-----HHH
Q 002083 320 RFLKSDSHNLKYMGIDALGRLIKTSPEIAE-----QHQLAVIDCLEDPDDTLKRKTFELLYKMTK--SSNVE-----VIV 387 (969)
Q Consensus 320 ~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~-----~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n--~~Nv~-----~IV 387 (969)
.+|.+.+++++..++..|..|+...+.... .-...++.+|.+++..+|+.++..|..++. +++++ .++
T Consensus 241 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l 320 (450)
T 2jdq_A 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 999988999999999999999987765332 123457788899999999999999999984 34443 355
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHH
Q 002083 388 DRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLR 467 (969)
Q Consensus 388 ~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr 467 (969)
..|+..+.+ .+..+|.+++..++.++....+.. +..+ +. ..++..+++++.. .+++++
T Consensus 321 ~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~---~~~l---~~-------~~~i~~L~~ll~~--------~~~~v~ 378 (450)
T 2jdq_A 321 PALISILQT-AEFRTRKEAAWAITNATSGGSAEQ---IKYL---VE-------LGCIKPLCDLLTV--------MDSKIV 378 (450)
T ss_dssp HHHHHHHHH-SCHHHHHHHHHHHHHHHHHCCHHH---HHHH---HH-------HTCHHHHHHGGGS--------SCHHHH
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCHHH---HHHH---HH-------CCCHHHHHHHhcC--------CCHHHH
Confidence 677777765 577899999999998887543221 1111 11 1123334444432 246777
Q ss_pred HHHHHHHHHHhC
Q 002083 468 SSAVESYLRIIG 479 (969)
Q Consensus 468 ~~av~~l~~lL~ 479 (969)
..++..+..++.
T Consensus 379 ~~a~~aL~~l~~ 390 (450)
T 2jdq_A 379 QVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666654
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.23 E-value=3.5e-09 Score=120.05 Aligned_cols=320 Identities=12% Similarity=0.099 Sum_probs=227.0
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhc--cCchHHH-----HHHHHHHhhhcCc-cHHHHHHHHHHHHccccc--chH-
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLN--EDHDLII-----LIVNTIQKDLKSD-NYLIVCAALNAVCKLINE--ETI- 143 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~--~~~dlll-----L~iNtLqKDL~s~-N~~vralALr~Ls~I~~~--el~- 143 (969)
...+++.+++++...|..+..++..++. .++..-. -++..|.+-|++. ++.++..|+++++++... +..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3456667777777777777777766542 2332111 2455666667777 899999999999988652 211
Q ss_pred ----hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhC
Q 002083 144 ----PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCD-NDPGVMGATLCPLFDLITVD 213 (969)
Q Consensus 144 ----~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D-~D~~Vv~aAl~~L~ei~~~~ 213 (969)
..+++.+.++|.++++.||..|+.++..+....++... ..++.+.++|.+ .++.|...|+.+|..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 35788899999999999999999999999987765332 357788888884 78999999999999888654
Q ss_pred -ch----hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHh-----hhHHHHHHhHhcc
Q 002083 214 -VN----SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASE-----NMYTVVGDIFRKC 283 (969)
Q Consensus 214 -p~----~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se-----~l~~iL~~iL~~~ 283 (969)
+. ....++|.++++|+. .++..+...+..|..++...+...+ .+.+.|..+++..
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 246 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFV---------------SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN 246 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTC---------------CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHHHHHHHHcc---------------CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC
Confidence 32 234556666666531 3688888999999999876543322 2345555555532
Q ss_pred CCCCCCCchHHHHHHHHHHhcCCC-HHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHH-----HhH
Q 002083 284 DSSSNIGNAVLYECICCVSSIYAN-PKLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAE-----QHQ 352 (969)
Q Consensus 284 ~~~~Ni~~AVlyEaik~I~~l~~~-~~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~-----~h~ 352 (969)
...|...|+.++..+... +...+ .++..|..++.+.++.+|.-++.+|..|+..++.... .-.
T Consensus 247 ------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l 320 (450)
T 2jdq_A 247 ------DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320 (450)
T ss_dssp ------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred ------chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 247888899998887643 32221 3677889999988899999999999999976654433 223
Q ss_pred HhhccccCCCchHHHHHHHHHhhcccCC---CcHHH-----HHHHHHHHHhhcCChhhHHHHHHHHHHHhhh
Q 002083 353 LAVIDCLEDPDDTLKRKTFELLYKMTKS---SNVEV-----IVDRMIDYMISINDNHYKTEIASRCVELAEQ 416 (969)
Q Consensus 353 ~~I~~cL~D~D~sIR~kaLdLL~~L~n~---~Nv~~-----IV~eLl~yl~~~~D~~~k~eli~~I~~laek 416 (969)
..++.+|.+++..+|+.+...|..++.. ++++. ++..|++.+.+ .|..++..++.++..++..
T Consensus 321 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHh
Confidence 4577788899999999999999999743 44443 45566666654 5677888888888777753
No 20
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.22 E-value=2.8e-08 Score=122.07 Aligned_cols=477 Identities=11% Similarity=0.066 Sum_probs=277.4
Q ss_pred HHHHhhcCCCcchhHHHHHHHHhhhcc------CchHHHHHHHHHHhhhcCc-cHHHHHHHHHHHHcccc---------c
Q 002083 77 HAVKMTHDDNLVLKRTGYLAVTLFLNE------DHDLIILIVNTIQKDLKSD-NYLIVCAALNAVCKLIN---------E 140 (969)
Q Consensus 77 ~vIkl~sS~~~~~KRlgYLals~~~~~------~~dlllL~iNtLqKDL~s~-N~~vralALr~Ls~I~~---------~ 140 (969)
.+++.+.+++-..|+....++..++.. -++++ ..|..-+.++ ++.+|-.|++++..|.. .
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll----~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 174 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELM----KIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV 174 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHH----HHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHH----HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHH
Confidence 345566666666666665555554432 23443 4444556677 88899999988877643 2
Q ss_pred chHhhHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhCCcch------hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002083 141 ETIPAVLPQVVELLGHS--KEAVRRKAIMALHRFYQKSPSSV------QHLVSNFRKRLCDNDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 141 el~~~l~~~V~~lL~d~--~pyVRKkA~lal~kiy~~~Pe~v------~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~ 212 (969)
...+.+++.+..++.|. ++.||+.|+-|+..+.....+.+ ..+++.+...+.+.++.|...++..|.+++..
T Consensus 175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 35667788888889987 89999999999998754332211 23567777788899999998888888888877
Q ss_pred CchhhHHHHH-HHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCCh-----------------HH----Hh
Q 002083 213 DVNSYKDLVI-SFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDK-----------------QA----SE 270 (969)
Q Consensus 213 ~p~~~~~Lv~-~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~-----------------~~----se 270 (969)
.+..+.+.+. .++.++...+.. .++-.....++++..+..... .. ..
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~-----------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKS-----------PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIK 323 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTC-----------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHH
Confidence 7765555555 555554443221 245556666666655432110 00 12
Q ss_pred hhHHHHHHhHhccCCC-CCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC-hh
Q 002083 271 NMYTVVGDIFRKCDSS-SNIGNAVLYECICCVSSIYA--NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS-PE 346 (969)
Q Consensus 271 ~l~~iL~~iL~~~~~~-~Ni~~AVlyEaik~I~~l~~--~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~-P~ 346 (969)
.+.+.|...++..+.. .--...+...+..++..+.. ....+......+...+.+.+...|..++..|..|+... ++
T Consensus 324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 403 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV 403 (861)
T ss_dssp HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH
Confidence 2233333333321100 00013566666666644321 13445556677777788888999999999999998764 35
Q ss_pred HHHHhHH----hhccccCCCchHHHHHHHHHhhccc--------CCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002083 347 IAEQHQL----AVIDCLEDPDDTLKRKTFELLYKMT--------KSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELA 414 (969)
Q Consensus 347 l~~~h~~----~I~~cL~D~D~sIR~kaLdLL~~L~--------n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~la 414 (969)
.+.+|.. .++.++.|++..+|..++..|-.++ +...+..++..|++.+.+ +...+..++.++..++
T Consensus 404 ~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLV 481 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHH
Confidence 5555543 4566788999999999988777665 356789999999999865 3677888888888887
Q ss_pred hhcC--------CchHHHHHHHHHHHhhhC--ccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCC---
Q 002083 415 EQFA--------PSNHWFIQTMNKVFEHAG--DLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEP--- 481 (969)
Q Consensus 415 ekya--------p~~~W~Id~L~~ll~~~g--d~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~--- 481 (969)
+.+. |...-.+..|++++.... ..+...+...+..++ ...+.+ ..+ .-...+..+++.+.+.
T Consensus 482 ~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~-~~~~~~---~~~-~~~~l~~~l~~~l~~~~~~ 556 (861)
T 2bpt_A 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV-EYATDT---VAE-TSASISTFVMDKLGQTMSV 556 (861)
T ss_dssp HHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH-HHCCGG---GHH-HHHHHHHHHHHHHHHHTTS
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH-HHcchh---hHH-HHHHHHHHHHHHHHHHHhh
Confidence 7643 222333444445443211 233444444333333 332221 111 1122333333333211
Q ss_pred -----C-----CchhHHHHHHHHhccccCCCCC---CChHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHhhhccc
Q 002083 482 -----K-----LPSVFLQVICWVLGEYGTADGK---VSASYITGKLCDVAEAYSNDE-TIKAYAITALMKIYAFEIAAGR 547 (969)
Q Consensus 482 -----~-----~~e~l~~~i~WILGEY~~~~~~---~~~~~Il~~L~~~~~~~~e~~-~Vk~~ILtAl~KL~~~~~~~~~ 547 (969)
. ....++..+++.++......+. .-.+.++..+...+... .. .+|..++.++..+...... .
T Consensus 557 ~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~v~~~~~~~l~~l~~~~~~--~ 632 (861)
T 2bpt_A 557 DENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK--DSAFIEDDVFYAISALAASLGK--G 632 (861)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST--TGGGTHHHHHHHHHHHHHHHGG--G
T ss_pred hcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccC--CCCcHHHHHHHHHHHHHHHHhh--h
Confidence 0 0112334556777665542211 11234555555555422 23 6788777777766543210 0
Q ss_pred cCCCcHHHHHHHHHHhcCCChhHHhHHHHHHH
Q 002083 548 KVDMLPECQSLIEELSASHSTDLQQRAYELEA 579 (969)
Q Consensus 548 ~~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~ 579 (969)
.....+.+...+...+.+.+.++|..|.....
T Consensus 633 ~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~ 664 (861)
T 2bpt_A 633 FEKYLETFSPYLLKALNQVDSPVSITAVGFIA 664 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 01123455556666667788899998877654
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.18 E-value=8.8e-09 Score=120.79 Aligned_cols=323 Identities=11% Similarity=0.114 Sum_probs=231.0
Q ss_pred cchHHHHHHhhcCCCcchhHHHHHHHHhhhcc--CchHHH----HHHHHHHhhhcCc-cHHHHHHHHHHHHccccc--ch
Q 002083 72 SFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNE--DHDLII----LIVNTIQKDLKSD-NYLIVCAALNAVCKLINE--ET 142 (969)
Q Consensus 72 sf~~~~vIkl~sS~~~~~KRlgYLals~~~~~--~~dlll----L~iNtLqKDL~s~-N~~vralALr~Ls~I~~~--el 142 (969)
......+++.+.+++...++.+-.++..++.. ++..-. -++..|.+-|.++ ++.++..|+.+|++|... +.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34567788889999988888888888877653 332211 1456777778887 899999999999998762 22
Q ss_pred H-----hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002083 143 I-----PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 143 ~-----~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~ 212 (969)
. ..+++.+.++|.++++.||..|+.++..+....|+... ..++.+..+|.+.++.|...|+.+|..++..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 2 24578888999999999999999999999987654322 4678888999999999999999999988865
Q ss_pred C-chh----hHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHh-----hhHHHHHHhHhc
Q 002083 213 D-VNS----YKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASE-----NMYTVVGDIFRK 282 (969)
Q Consensus 213 ~-p~~----~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se-----~l~~iL~~iL~~ 282 (969)
. +.. ...+++.++.+|. -.++..+...+..|..++...+...+ .+.+.|..+|+.
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~---------------~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~ 310 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIY---------------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTT---------------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred CCCCCcHHHHHhHHHHHHHHHc---------------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC
Confidence 4 321 2344555555542 13678888999999998876554333 234556566653
Q ss_pred cCCCCCCCchHHHHHHHHHHhcCCC-HHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH-----h
Q 002083 283 CDSSSNIGNAVLYECICCVSSIYAN-PKLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ-----H 351 (969)
Q Consensus 283 ~~~~~Ni~~AVlyEaik~I~~l~~~-~~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~-----h 351 (969)
. ...|...|+.++..+... +...+ .++..|..+|.+.++.+|..++.+|..|+...+..+.. -
T Consensus 311 ~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 384 (530)
T 1wa5_B 311 E------STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 384 (530)
T ss_dssp S------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred C------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 2 247888999999888643 33222 35678889999888999999999999999876654432 2
Q ss_pred HHhhccccCCCchHHHHHHHHHhhcccCC-----CcHHH-----HHHHHHHHHhhcCChhhHHHHHHHHHHHhhh
Q 002083 352 QLAVIDCLEDPDDTLKRKTFELLYKMTKS-----SNVEV-----IVDRMIDYMISINDNHYKTEIASRCVELAEQ 416 (969)
Q Consensus 352 ~~~I~~cL~D~D~sIR~kaLdLL~~L~n~-----~Nv~~-----IV~eLl~yl~~~~D~~~k~eli~~I~~laek 416 (969)
...++.+|.+++..+|..++..|..++.. +++.. ++..|...+.+ .|..++..++..+..++..
T Consensus 385 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHHh
Confidence 34567778888999999999999998753 33333 44556666654 4666777777666666543
No 22
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.18 E-value=5.7e-08 Score=117.07 Aligned_cols=436 Identities=13% Similarity=0.104 Sum_probs=263.1
Q ss_pred HHHHHHHhhhcCccHHHHHHHHHHHHcccccch-----H--hhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhCCcchh
Q 002083 110 LIVNTIQKDLKSDNYLIVCAALNAVCKLINEET-----I--PAVLPQVVELLGHS-KEAVRRKAIMALHRFYQKSPSSVQ 181 (969)
Q Consensus 110 L~iNtLqKDL~s~N~~vralALr~Ls~I~~~el-----~--~~l~~~V~~lL~d~-~pyVRKkA~lal~kiy~~~Pe~v~ 181 (969)
-++..|.+=|++.++.+|..|+.+|+++...+- + +.+++.+.+.|.+. ++.+|+.|+.++..+... ++...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~ 92 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLL 92 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHH
Confidence 345556666778899999999999988765432 1 24677788888764 899999999999876543 33221
Q ss_pred -----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH-----HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHH
Q 002083 182 -----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK-----DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQ 251 (969)
Q Consensus 182 -----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~-----~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQ 251 (969)
..++.|.++|.+.|+.|...|+.+|..++..+..... ..++.++++|+. .++-.+
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~---------------~~~~~~ 157 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---------------TNVKFL 157 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC---------------CCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc---------------CCHHHH
Confidence 3678888999999999999999999998876533222 334555555431 244456
Q ss_pred HHHHHHHHHhCCCChHHHhh-----hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH
Q 002083 252 IRLLKILALLGSGDKQASEN-----MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIE-----SAADVIARF 321 (969)
Q Consensus 252 ikLLklL~~l~~~d~~~se~-----l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~-----~ai~~L~~f 321 (969)
...++.|..++..++..... ..+.|..+++..+ ...++..|++++..+..+++... .++..|..+
T Consensus 158 ~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~l 232 (644)
T 2z6h_A 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-----YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-----hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 66677787777655443322 2455666676432 23566778888877765444332 256788889
Q ss_pred hcCCChhHHHHHHHHHHHHHhhChh--HHHHhHHhhccccCCCchHHHHHHHHHhhcccCCC--cHHH-----HHHHHHH
Q 002083 322 LKSDSHNLKYMGIDALGRLIKTSPE--IAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSS--NVEV-----IVDRMID 392 (969)
Q Consensus 322 L~s~d~NlrYvaL~~L~~I~~~~P~--l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~--Nv~~-----IV~eLl~ 392 (969)
+.+.+..++..++..|..|+...+. .+......++.+|+++|..+|..+...|..|+... |.+. .++.|+.
T Consensus 233 l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~ 312 (644)
T 2z6h_A 233 LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence 9888899999999999999876543 22334456777888999999999999999998753 3333 4677788
Q ss_pred HHhhcCC-hhhHHHHHHHHHHHhhhcCCchH--------HHHHHHHHHHhhhCc-cchHHHHHHHHHHHhcccCCCcccc
Q 002083 393 YMISIND-NHYKTEIASRCVELAEQFAPSNH--------WFIQTMNKVFEHAGD-LVNIKVAHNLMRLIAEGFGEDDDNA 462 (969)
Q Consensus 393 yl~~~~D-~~~k~eli~~I~~laekyap~~~--------W~Id~L~~ll~~~gd-~v~~ev~~~li~lI~~~~g~~~~~~ 462 (969)
.+.+..+ ..++..++..++.++...+.+.. -.+..|.+++....+ .+..+.+..+.. |..+ ....
T Consensus 313 lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n-La~~----~~~~ 387 (644)
T 2z6h_A 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-LALC----PANH 387 (644)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHH-HTTS----GGGH
T ss_pred HHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHH-HccC----HHHH
Confidence 8876443 58889999999998864332221 134556666654322 233333322222 2211 1111
Q ss_pred chhH-HHHHHHHHHHHhCCCCCchhHHHHHHHHhcc--ccCCCCCCChHH--------------------------HHHH
Q 002083 463 DSQL-RSSAVESYLRIIGEPKLPSVFLQVICWVLGE--YGTADGKVSASY--------------------------ITGK 513 (969)
Q Consensus 463 ~p~l-r~~av~~l~~lL~d~~~~e~l~~~i~WILGE--Y~~~~~~~~~~~--------------------------Il~~ 513 (969)
..+ ...++..+++++.+.. .+ .++-++|.++. |... ...+. .+..
T Consensus 388 -~~i~~~~~i~~Lv~lL~~~~-~~-vr~~a~~al~n~~~~~~---~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~ 461 (644)
T 2z6h_A 388 -APLREQGAIPRLVQLLVRAH-QD-TQRRTSMGGTQQQFVEG---VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 461 (644)
T ss_dssp -HHHHHTTHHHHHHHHHHHHH-HH-HTTC----------CCS---SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHH
T ss_pred -HHHHHcCCHHHHHHHHhccc-hh-hhhHhhhccccchhccc---ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHH
Confidence 112 2235556666654321 11 12223455544 2211 01111 1233
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhccccCCCc--HHHHHHHHHHhcCCChhHHhHHHHHHHHhcC
Q 002083 514 LCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDML--PECQSLIEELSASHSTDLQQRAYELEAVTGL 583 (969)
Q Consensus 514 L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~~--~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~ 583 (969)
|++.+. ..++.++...+.++.++....... +.. ...+..|..++.+.+.+||+.|...+.-+..
T Consensus 462 Lv~lL~--~~~~~v~~~a~~aL~~l~~~~~~~----~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 462 FVQLLY--SPIENIQRVAAGVLCELAQDKEAA----EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHTT--CSCHHHHHHHHHHHHHHHTSHHHH----HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHHHHcCHHHH----HHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 333332 345678888787877765321000 000 0124567778889999999999987776654
No 23
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.16 E-value=1.3e-08 Score=122.83 Aligned_cols=391 Identities=11% Similarity=0.102 Sum_probs=242.0
Q ss_pred hhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc--ccchHhhHHHHHHHhcCCCChHHHHHHH
Q 002083 89 LKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI--NEETIPAVLPQVVELLGHSKEAVRRKAI 166 (969)
Q Consensus 89 ~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~--~~el~~~l~~~V~~lL~d~~pyVRKkA~ 166 (969)
.+|+.|+... -.+-+.+.+-+++ =++++|...+=++--+++.+. .+|++--+...+++-|.|++|+||--|+
T Consensus 59 l~Kli~l~~~--G~d~s~~~~~vvk----l~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lAL 132 (621)
T 2vgl_A 59 VCKLLFIFLL--GHDIDFGHMEAVN----LLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLAL 132 (621)
T ss_dssp HHHHHHHHHH--SCCCCSCHHHHHH----GGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCchhHHHHHH----HhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5678777553 2333444443333 467888888766666665553 4666777788999999999999999999
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHhh--cCCChhHHHHHHHHHHHhhhhCchhhH--HHHHHHHHHHHHHHhccCCCCcCC
Q 002083 167 MALHRFYQKSPSSVQHLVSNFRKRL--CDNDPGVMGATLCPLFDLITVDVNSYK--DLVISFVSILKQVAERRLPKSYDY 242 (969)
Q Consensus 167 lal~kiy~~~Pe~v~~l~~~l~~lL--~D~D~~Vv~aAl~~L~ei~~~~p~~~~--~Lv~~lv~iLk~l~~~~lp~~y~y 242 (969)
.++.++ ..|+.++.+.+.+.++| .|.+|.|.-.|+.++..+...+|+... .+++.+.++|.+
T Consensus 133 r~L~~i--~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d------------ 198 (621)
T 2vgl_A 133 HCIANV--GSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLND------------ 198 (621)
T ss_dssp HHHHHH--CCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTC------------
T ss_pred HHhhcc--CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCC------------
Confidence 999998 46899999999999999 999999998888888888888887554 444444444321
Q ss_pred CCCCChhHHHHHHHHHHHhCCCChHHH----hhhHHHHHHhHhccCCC-C-----CC-CchHHHHHHHHHHhcCC--CHH
Q 002083 243 HQMPAPFIQIRLLKILALLGSGDKQAS----ENMYTVVGDIFRKCDSS-S-----NI-GNAVLYECICCVSSIYA--NPK 309 (969)
Q Consensus 243 ~~v~~PWlQikLLklL~~l~~~d~~~s----e~l~~iL~~iL~~~~~~-~-----Ni-~~AVlyEaik~I~~l~~--~~~ 309 (969)
.+|-.+...+.+|..++..++... ..+++.|..++...+.. . ++ +.=.....++++..+.+ +++
T Consensus 199 ---~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~ 275 (621)
T 2vgl_A 199 ---QHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA 275 (621)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHH
T ss_pred ---CCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHH
Confidence 477888888888888776665432 23445555555432110 0 00 12355666777766654 466
Q ss_pred HHHHHHHHHHHHhcC----C----------ChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhh
Q 002083 310 LIESAADVIARFLKS----D----------SHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLY 375 (969)
Q Consensus 310 ll~~ai~~L~~fL~s----~----------d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~ 375 (969)
..+...+.|..++.+ . .+-+.|-+.+.+..+. ..+.++..-...+..+|.++|..||-.+|+.|.
T Consensus 276 ~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~ 354 (621)
T 2vgl_A 276 VRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMC 354 (621)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 666666666665532 1 1245555555555553 356666665566667778889999999999999
Q ss_pred cccCCCc----HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHH
Q 002083 376 KMTKSSN----VEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLI 451 (969)
Q Consensus 376 ~L~n~~N----v~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI 451 (969)
.++.... +......++..+....|.++|...+.-+..++.. .+.+-.+..|...+......+..+++..+.. +
T Consensus 355 ~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~-l 431 (621)
T 2vgl_A 355 TLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQIVAEMLSYLETADYSIREEIVLKVAI-L 431 (621)
T ss_dssp HHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-H
T ss_pred HHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-H
Confidence 9987653 3333444445555136778888888877777743 1334445555555544333333444433332 2
Q ss_pred hcccCCCccccchhHHHHHHHHHHHHhCCC--CCchhHHHHHHHHhccccCCCCCCChHHHHHHHHHHHh
Q 002083 452 AEGFGEDDDNADSQLRSSAVESYLRIIGEP--KLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAE 519 (969)
Q Consensus 452 ~~~~g~~~~~~~p~lr~~av~~l~~lL~d~--~~~e~l~~~i~WILGEY~~~~~~~~~~~Il~~L~~~~~ 519 (969)
++. ++......+..+.+++... ...+..+..+.-++.+.... -.+++..+++.+.
T Consensus 432 a~k--------~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~-----~~~~~~~l~~~l~ 488 (621)
T 2vgl_A 432 AEK--------YAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDV-----QGYAAKTVFEALQ 488 (621)
T ss_dssp HHH--------HCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSC-----HHHHHHHHHHHHT
T ss_pred HHh--------cCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhH-----HHHHHHHHHHHHc
Confidence 222 2333455566666666521 12223344455566554321 2456666666553
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.16 E-value=3.6e-08 Score=115.57 Aligned_cols=285 Identities=14% Similarity=0.148 Sum_probs=208.4
Q ss_pred hHHHHHHhhcCC-CcchhHHHHHHHHhhhccCchHHHH-----HHHHHHhhhcCccHHHHHHHHHHHHcccccc------
Q 002083 74 GYIHAVKMTHDD-NLVLKRTGYLAVTLFLNEDHDLIIL-----IVNTIQKDLKSDNYLIVCAALNAVCKLINEE------ 141 (969)
Q Consensus 74 ~~~~vIkl~sS~-~~~~KRlgYLals~~~~~~~dlllL-----~iNtLqKDL~s~N~~vralALr~Ls~I~~~e------ 141 (969)
+....++++.++ +...+..+..++..+...+++..-. ++..|.+-|.++++.+|..|+.+|++|....
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 456677888886 7888888888888887765543322 2566677777889999999999999987532
Q ss_pred -hHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-Ccc----hhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch
Q 002083 142 -TIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKS-PSS----VQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN 215 (969)
Q Consensus 142 -l~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~-Pe~----v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~ 215 (969)
+...+++.+.++|.+.++.||+.|+.++..+.... |.. ...+++.|..+|.+.|+.|...|+.+|..++...+.
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~ 290 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 290 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH
Confidence 22346788999999999999999999999999765 431 235788899999999999999999999888765544
Q ss_pred hhH-----HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-----hHHHHHHhHhccCC
Q 002083 216 SYK-----DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-----MYTVVGDIFRKCDS 285 (969)
Q Consensus 216 ~~~-----~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-----l~~iL~~iL~~~~~ 285 (969)
... .+++.++.+|. + .++..+...++.|..++..++...+. +.+.|..+|+..
T Consensus 291 ~~~~~~~~~~v~~Lv~lL~----~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-- 353 (530)
T 1wa5_B 291 AIQAVIDVRIPKRLVELLS----H-----------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-- 353 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGG----C-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--
T ss_pred HHHHHHhcCcHHHHHHHHC----C-----------CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--
Confidence 333 23344444442 1 36788999999999999876544332 344555555532
Q ss_pred CCCCCchHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC-h--hHHHH-----h
Q 002083 286 SSNIGNAVLYECICCVSSIYA-NPKLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTS-P--EIAEQ-----H 351 (969)
Q Consensus 286 ~~Ni~~AVlyEaik~I~~l~~-~~~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~-P--~l~~~-----h 351 (969)
...|..+|+.++..+.. +++... .++..|..+|.+.++.+|..++.+|..|+... + ..... -
T Consensus 354 ----~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~ 429 (530)
T 1wa5_B 354 ----KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429 (530)
T ss_dssp ----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred ----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC
Confidence 25789999999988864 344332 35668888898888999999999999998753 3 33221 2
Q ss_pred HHhhccccCCCchHHHHHHHHHhhcccC
Q 002083 352 QLAVIDCLEDPDDTLKRKTFELLYKMTK 379 (969)
Q Consensus 352 ~~~I~~cL~D~D~sIR~kaLdLL~~L~n 379 (969)
...++.+|.++|..++..++..|..++.
T Consensus 430 l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 430 IKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3456778888999999999999887764
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.13 E-value=2.6e-08 Score=116.46 Aligned_cols=321 Identities=12% Similarity=0.141 Sum_probs=226.0
Q ss_pred chHHHHHHhhcCCCcchhHHHHHHHHhhhccCc--hHHHH----HHHHHHhhhcCcc-HHHHHHHHHHHHccccc--chH
Q 002083 73 FGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDH--DLIIL----IVNTIQKDLKSDN-YLIVCAALNAVCKLINE--ETI 143 (969)
Q Consensus 73 f~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~--dlllL----~iNtLqKDL~s~N-~~vralALr~Ls~I~~~--el~ 143 (969)
.....+++++.+++...+..+-.++..++..+. ....+ ++..|.+-|.+++ +.++..|+.+|++|... +..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 446778899999998888888777777654332 21111 3556666777776 99999999999988763 222
Q ss_pred h-----hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhh-cCCChhHHHHHHHHHHHhhhh
Q 002083 144 P-----AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRL-CDNDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 144 ~-----~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL-~D~D~~Vv~aAl~~L~ei~~~ 212 (969)
. ..++.+.++|.++++.||..|+.++.++....|+... ..++.+..+| .+.++.|...|+.+|..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2 3678899999999999999999999999877665322 2567778888 678999999999999988876
Q ss_pred Cchhh----HHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-----hHHHHHHhHhcc
Q 002083 213 DVNSY----KDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-----MYTVVGDIFRKC 283 (969)
Q Consensus 213 ~p~~~----~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-----l~~iL~~iL~~~ 283 (969)
.+..- ...++.++.+|. -.++..+...+..|..++.......+. ..+.|..+|...
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~---------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 298 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIH---------------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 298 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTT---------------CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred CCCCcHHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC
Confidence 54322 233444444432 147889999999999998766543333 344565666533
Q ss_pred CCCCCCCchHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhChhHHHH-----h
Q 002083 284 DSSSNIGNAVLYECICCVSSIYA-NPKLIE-----SAADVIARFLKSD-SHNLKYMGIDALGRLIKTSPEIAEQ-----H 351 (969)
Q Consensus 284 ~~~~Ni~~AVlyEaik~I~~l~~-~~~ll~-----~ai~~L~~fL~s~-d~NlrYvaL~~L~~I~~~~P~l~~~-----h 351 (969)
...|...|+.++..+.. ++...+ .++..|..+|.+. ++.++.-++.+|..|+...+..+.. -
T Consensus 299 ------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~ 372 (528)
T 4b8j_A 299 ------SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 372 (528)
T ss_dssp ------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred ------ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Confidence 24788999999988865 333222 2567888899888 8999999999999999866654332 2
Q ss_pred HHhhccccCCCchHHHHHHHHHhhcccCC---CcHHH-----HHHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002083 352 QLAVIDCLEDPDDTLKRKTFELLYKMTKS---SNVEV-----IVDRMIDYMISINDNHYKTEIASRCVELAE 415 (969)
Q Consensus 352 ~~~I~~cL~D~D~sIR~kaLdLL~~L~n~---~Nv~~-----IV~eLl~yl~~~~D~~~k~eli~~I~~lae 415 (969)
...++.+|.+.|..+|..++..|..++.. ++... ++..|...+.. .|..++..++..+..++.
T Consensus 373 i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 373 IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHH
Confidence 24567778888999999999999998765 33333 34455555544 566666666666666654
No 26
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.09 E-value=2e-07 Score=120.20 Aligned_cols=445 Identities=11% Similarity=0.118 Sum_probs=249.1
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHhhhccCch-HHHHHHHHHHhhhcCccHHHHHHHHHHHHccc---ccc---------h
Q 002083 76 IHAVKMTHDDNLVLKRTGYLAVTLFLNEDHD-LIILIVNTIQKDLKSDNYLIVCAALNAVCKLI---NEE---------T 142 (969)
Q Consensus 76 ~~vIkl~sS~~~~~KRlgYLals~~~~~~~d-lllL~iNtLqKDL~s~N~~vralALr~Ls~I~---~~e---------l 142 (969)
..+++.+.+++...|+.+..++..++..-++ ..--+++.+.+-|.++++.+|..|..+++.+. .++ .
T Consensus 51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~ 130 (1230)
T 1u6g_C 51 KMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV 130 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH
Confidence 3355666788889999999999888765443 34456778888899999999988877777654 333 5
Q ss_pred HhhHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhCCcc----hhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch-h
Q 002083 143 IPAVLPQVVELLG-HSKEAVRRKAIMALHRFYQKSPSS----VQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN-S 216 (969)
Q Consensus 143 ~~~l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~~Pe~----v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~-~ 216 (969)
.+.++|.+.+++. +.++.+|..|+.++..+....++. ++.+++.+...|.|.++.|...|+.+|..++...++ .
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 7889999999998 588999999999999999776653 346778888888999999999988888877765433 3
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCC-hHHHhhhHHHHHHhHhccCCCCCCCchHHH
Q 002083 217 YKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGD-KQASENMYTVVGDIFRKCDSSSNIGNAVLY 295 (969)
Q Consensus 217 ~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d-~~~se~l~~iL~~iL~~~~~~~Ni~~AVly 295 (969)
+..+++.+++.|..- .+. .+..- -+..+-.+....... ......+.+.+...++.. ...+ ....+
T Consensus 211 ~~~~l~~l~~~L~~~------~~~---~~r~~--a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~--~~~v-R~~a~ 276 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKN------DSM---STTRT--YIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD--DDEL-REYCI 276 (1230)
T ss_dssp CTTHHHHHHHHHHHT------CSS---CSCTT--HHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC--CTTT-HHHHH
T ss_pred HHHHHHHHHHHhccC------Cch---hHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHH-HHHHH
Confidence 455667777766542 000 01111 122222222211100 001123344444444321 1110 11223
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHHhcC-------------------------------------CChhHHHHHHHH
Q 002083 296 ECICCVSSIYAN--PKLIESAADVIARFLKS-------------------------------------DSHNLKYMGIDA 336 (969)
Q Consensus 296 Eaik~I~~l~~~--~~ll~~ai~~L~~fL~s-------------------------------------~d~NlrYvaL~~ 336 (969)
+++..+....+. ...+...+..+..++.. ...++|..++..
T Consensus 277 ~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~ 356 (1230)
T 1u6g_C 277 QAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKC 356 (1230)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHH
Confidence 333333333221 12333333333333321 113579999999
Q ss_pred HHHHHhhChhHHHHhHH----hhccccCCCchHHHHHHHHHhhcccCC---------------------CcHHHHHHHHH
Q 002083 337 LGRLIKTSPEIAEQHQL----AVIDCLEDPDDTLKRKTFELLYKMTKS---------------------SNVEVIVDRMI 391 (969)
Q Consensus 337 L~~I~~~~P~l~~~h~~----~I~~cL~D~D~sIR~kaLdLL~~L~n~---------------------~Nv~~IV~eLl 391 (969)
+..++...|+.+.++.. .++.++.|.+..+|..+++.+..++.. .-+..++++++
T Consensus 357 l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 436 (1230)
T 1u6g_C 357 LDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV 436 (1230)
T ss_dssp HHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence 99999877765555543 355567888899999999887666531 11233444444
Q ss_pred H----HHhhcCChhhHHHHHHHHHHHhhhcCC----chHHHHHHHHHHHhhhCc--cchHHHHHHHHHHHhcccCCCccc
Q 002083 392 D----YMISINDNHYKTEIASRCVELAEQFAP----SNHWFIQTMNKVFEHAGD--LVNIKVAHNLMRLIAEGFGEDDDN 461 (969)
Q Consensus 392 ~----yl~~~~D~~~k~eli~~I~~laekyap----~~~W~Id~L~~ll~~~gd--~v~~ev~~~li~lI~~~~g~~~~~ 461 (969)
. .+.+ .+...|..++..++.++..... ...-++..+++++..... .+..+.+..+..++. ..|. +
T Consensus 437 ~~l~~~l~~-~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~-~~~~---~ 511 (1230)
T 1u6g_C 437 KALHKQMKE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC-NHSP---Q 511 (1230)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH-SSCG---G
T ss_pred HHHHHHhcc-CCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH-hCCH---H
Confidence 4 3554 4556777788888888876432 223344444554443221 233444444444332 1221 1
Q ss_pred cchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCC-------CCCCCh---HHHHHHHHHHHhhcCCcHHHHHHH
Q 002083 462 ADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTA-------DGKVSA---SYITGKLCDVAEAYSNDETIKAYA 531 (969)
Q Consensus 462 ~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~-------~~~~~~---~~Il~~L~~~~~~~~e~~~Vk~~I 531 (969)
........++..+...+.+... .. +..+++++++.... ...... +.++..++..+.....+..+|...
T Consensus 512 ~~~~~l~~llp~L~~~l~d~~~-~v-~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a 589 (1230)
T 1u6g_C 512 VFHPHVQALVPPVVACVGDPFY-KI-TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERA 589 (1230)
T ss_dssp GGHHHHTTTHHHHHHHHTCSSH-HH-HHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHcccch-HH-HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 0111223455666666766432 21 12233444333211 011111 234444444443334567889888
Q ss_pred HHHHHHHHHH
Q 002083 532 ITALMKIYAF 541 (969)
Q Consensus 532 LtAl~KL~~~ 541 (969)
+.++..+...
T Consensus 590 ~~~lg~L~~~ 599 (1230)
T 1u6g_C 590 ISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.07 E-value=2.6e-07 Score=107.99 Aligned_cols=286 Identities=17% Similarity=0.170 Sum_probs=212.1
Q ss_pred hHHHHHHhhcCCC-cchhHHHHHHHHhhhccCchHHHH-----HHHHHHhhhcCccHHHHHHHHHHHHccccc--chH--
Q 002083 74 GYIHAVKMTHDDN-LVLKRTGYLAVTLFLNEDHDLIIL-----IVNTIQKDLKSDNYLIVCAALNAVCKLINE--ETI-- 143 (969)
Q Consensus 74 ~~~~vIkl~sS~~-~~~KRlgYLals~~~~~~~dlllL-----~iNtLqKDL~s~N~~vralALr~Ls~I~~~--el~-- 143 (969)
+....++++.+++ ...+..+.-++..+...+++.... ++..|.+-|.++++.++..|+.+|++|... +..
T Consensus 118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 118 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 3555678888876 788888888888888766654332 567788888999999999999999998632 111
Q ss_pred ---hhHHHHHHHhc-CCCChHHHHHHHHHHHHHHhhCCcc----hhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch
Q 002083 144 ---PAVLPQVVELL-GHSKEAVRRKAIMALHRFYQKSPSS----VQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN 215 (969)
Q Consensus 144 ---~~l~~~V~~lL-~d~~pyVRKkA~lal~kiy~~~Pe~----v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~ 215 (969)
..+++.+.++| .+.++.||+.|+.++..+....|.. +...++.|..+|.+.|+.|...|+.+|..++.....
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 277 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTND 277 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 13567888888 6889999999999999999876542 235788999999999999999999999888755443
Q ss_pred hhH-----HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-----hHHHHHHhHhccCC
Q 002083 216 SYK-----DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-----MYTVVGDIFRKCDS 285 (969)
Q Consensus 216 ~~~-----~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-----l~~iL~~iL~~~~~ 285 (969)
... ..++.++.+|.. +++..+...++.|..++..++...+. +.+.|..+|+...
T Consensus 278 ~~~~~~~~g~v~~Lv~lL~~---------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~- 341 (528)
T 4b8j_A 278 KIQAVIEAGVCPRLVELLLH---------------PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL- 341 (528)
T ss_dssp HHHHHHHTTCHHHHHHHTTC---------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-
T ss_pred HHHHHHHcCHHHHHHHHHcC---------------CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-
Confidence 222 234455555431 36789999999999998876544332 3456666776321
Q ss_pred CCCCCchHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-ChhHHHH-----hHH
Q 002083 286 SSNIGNAVLYECICCVSSIYA-NPKLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKT-SPEIAEQ-----HQL 353 (969)
Q Consensus 286 ~~Ni~~AVlyEaik~I~~l~~-~~~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~-~P~l~~~-----h~~ 353 (969)
...|..+|+.++.++.. +++... .++..|..+|.+.+..+|..++.+|..++.. .+..... ...
T Consensus 342 ----~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~ 417 (528)
T 4b8j_A 342 ----KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIK 417 (528)
T ss_dssp ----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred ----cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 24788999999988754 343332 2456788899888999999999999999987 4544322 234
Q ss_pred hhccccCCCchHHHHHHHHHhhcccC
Q 002083 354 AVIDCLEDPDDTLKRKTFELLYKMTK 379 (969)
Q Consensus 354 ~I~~cL~D~D~sIR~kaLdLL~~L~n 379 (969)
.++.+|.++|..++..+++.|..|+.
T Consensus 418 ~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 418 PLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 67888899999999999999998864
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.07 E-value=4.8e-08 Score=120.80 Aligned_cols=444 Identities=16% Similarity=0.151 Sum_probs=259.6
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcc-----hhhHHHH
Q 002083 112 VNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSS-----VQHLVSN 186 (969)
Q Consensus 112 iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~-----v~~l~~~ 186 (969)
+..+.++|.++++.+|..|++.+..+...++....++.+.++|.+.++.||.+|+.++.++....+.. ....++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 56788899999999999999999887666777888999999999999999999999999998754321 1245677
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHhhhhCchhhH-----HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHH
Q 002083 187 FRKRLC-DNDPGVMGATLCPLFDLITVDVNSYK-----DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILAL 260 (969)
Q Consensus 187 l~~lL~-D~D~~Vv~aAl~~L~ei~~~~p~~~~-----~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~ 260 (969)
|.++|. +.|+.+..+|+.+|..+... ..... ..++.++++|+. .++-.|...+..|..
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~---------------~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGS---------------PVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTC---------------SCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHH
Confidence 777775 45899999999888886643 22211 233445554421 367788888888888
Q ss_pred hCCCChHHH-----hhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC-CCHHHHH-----HHHHHHHHHhcCCC-hh
Q 002083 261 LGSGDKQAS-----ENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY-ANPKLIE-----SAADVIARFLKSDS-HN 328 (969)
Q Consensus 261 l~~~d~~~s-----e~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~-~~~~ll~-----~ai~~L~~fL~s~d-~N 328 (969)
++...+... ....+.|..+|+.. | ..|...++.++..+. .+++... .++..|..+|.+.+ ..
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~----~--~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~ 334 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKT----N--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 334 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCC----C--HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHH
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcC----C--HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHH
Confidence 865432221 22345566666632 2 234444444444333 2333222 35677888888754 45
Q ss_pred HHHHHHHHHHHHHhhC---hhHHHH-hHHhhccccCCCchHHHHHHHHHhhcccCCC----cHHHHHHHHHHHHhhcCCh
Q 002083 329 LKYMGIDALGRLIKTS---PEIAEQ-HQLAVIDCLEDPDDTLKRKTFELLYKMTKSS----NVEVIVDRMIDYMISINDN 400 (969)
Q Consensus 329 lrYvaL~~L~~I~~~~---P~l~~~-h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~----Nv~~IV~eLl~yl~~~~D~ 400 (969)
.+..++..|..|+... +.++.. -...++.++.+.+..+++.++..|..++... .+..++..|+..+.. .|.
T Consensus 335 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~-~d~ 413 (780)
T 2z6g_A 335 LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS-DDI 413 (780)
T ss_dssp HHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC-SCH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC-CCH
Confidence 6667777777776422 122221 1356778888999999999999999987543 457788888888865 677
Q ss_pred hhHHHHHHHHHHHhhhcCCch-----HHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccc--cchhHH-HHHHH
Q 002083 401 HYKTEIASRCVELAEQFAPSN-----HWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDN--ADSQLR-SSAVE 472 (969)
Q Consensus 401 ~~k~eli~~I~~laekyap~~-----~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~--~~p~lr-~~av~ 472 (969)
..+..++..+..|+....... .-.+..|++++...++. +++....+..|..-....... ....++ ..++.
T Consensus 414 ~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~--~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~ 491 (780)
T 2z6g_A 414 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP 491 (780)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCH--HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHH
Confidence 899999999988876421111 12356677777654431 122222333333211000000 000111 22466
Q ss_pred HHHHHhCCCCCchhHHHHHHHHhccccCCCCCC---ChHHHHHHHHHHHhh-----------------c---CCcHHHHH
Q 002083 473 SYLRIIGEPKLPSVFLQVICWVLGEYGTADGKV---SASYITGKLCDVAEA-----------------Y---SNDETIKA 529 (969)
Q Consensus 473 ~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~---~~~~Il~~L~~~~~~-----------------~---~e~~~Vk~ 529 (969)
.+.++|.....+ .+++.++|+||..+...... ....++..|+..+.. + ...+.++.
T Consensus 492 ~L~~lL~~~~~~-~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~ 570 (780)
T 2z6g_A 492 VVVKLLHPPSHW-PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570 (780)
T ss_dssp HHHHTTSTTCCH-HHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHH
T ss_pred HHHHHhcCCChH-HHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHH
Confidence 777888765433 35678899999887421000 001234444444321 0 01245666
Q ss_pred HHHHHHHHHHHHhhhccccCCC-cHHHHHHHHHHhcCCChhHHhHHHHHHHHhcCC
Q 002083 530 YAITALMKIYAFEIAAGRKVDM-LPECQSLIEELSASHSTDLQQRAYELEAVTGLD 584 (969)
Q Consensus 530 ~ILtAl~KL~~~~~~~~~~~~~-~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~ 584 (969)
..+.|+.++... .... ..+ ...++..|-.++.+.+.+||..|...+.-|..+
T Consensus 571 ~a~~aL~~La~~-~~~~--~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 571 ACTGALHILARD-IHNR--IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HHHHHHHHHTTS-HHHH--HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC-hhhH--HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 667777766421 0000 000 011245566777889999999988765444434
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.04 E-value=3.2e-07 Score=106.33 Aligned_cols=320 Identities=13% Similarity=0.121 Sum_probs=206.7
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhccCchH-HH----HHHHHHHhhhc-CccHHHHHHHHHHHHcccccc-----h-
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDL-II----LIVNTIQKDLK-SDNYLIVCAALNAVCKLINEE-----T- 142 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dl-ll----L~iNtLqKDL~-s~N~~vralALr~Ls~I~~~e-----l- 142 (969)
....++++.+++...+.-+-.++..+...++.. .+ =++..|.+-|. ++++.++-.|+++|.++...+ +
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 98 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 344566666777666666666666555433211 01 12334444443 347788888888888765321 1
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch-----hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh
Q 002083 143 IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV-----QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 143 ~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v-----~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
-...++.+.++|.+.++-||+.|+.++.++...+++.. ...++.+.++|.+.++.|...+..+|..+...++..-
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 11367788999999999999999999999998876533 2468889999999999998888777777765544321
Q ss_pred H-----HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-----hHHHHHHhHhccCCCC
Q 002083 218 K-----DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-----MYTVVGDIFRKCDSSS 287 (969)
Q Consensus 218 ~-----~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-----l~~iL~~iL~~~~~~~ 287 (969)
. ..++.++++|+.- ..+..+....++|..++.... .... ..+.|..+++..
T Consensus 179 ~~i~~~~~i~~L~~ll~~~--------------~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~~~~L~~ll~~~---- 239 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTY--------------TYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDP---- 239 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHHTTTTSS----
T ss_pred HHHHHCCCHHHHHHHHHhC--------------ChHHHHHHHHHHHHHHhcCcc-cHHHHHHCCCHHHHHHHHhCC----
Confidence 1 2356666766531 134455556777777765322 2222 233444444421
Q ss_pred CCCchHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHH---Hh--HHhhcccc
Q 002083 288 NIGNAVLYECICCVSSIYAN---PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAE---QH--QLAVIDCL 359 (969)
Q Consensus 288 Ni~~AVlyEaik~I~~l~~~---~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~---~h--~~~I~~cL 359 (969)
...+...++.++.++... ......++..|..++.+.+++++..++..|..|...+++... ++ ...++.+|
T Consensus 240 --~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll 317 (529)
T 1jdh_A 240 --SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317 (529)
T ss_dssp --CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Confidence 246788888888766432 222346788899999999999999999999999886653322 11 23455666
Q ss_pred CC--CchHHHHHHHHHhhcccCCC--c---HHH-----HHHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002083 360 ED--PDDTLKRKTFELLYKMTKSS--N---VEV-----IVDRMIDYMISINDNHYKTEIASRCVELAE 415 (969)
Q Consensus 360 ~D--~D~sIR~kaLdLL~~L~n~~--N---v~~-----IV~eLl~yl~~~~D~~~k~eli~~I~~lae 415 (969)
.+ .+..++..++..|..++..+ + ... .+..|...+.+..+..++.+++..+..++.
T Consensus 318 ~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 54 23689999999999998642 1 112 345566666653345788899888888885
No 30
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.03 E-value=5.3e-08 Score=110.37 Aligned_cols=360 Identities=11% Similarity=0.082 Sum_probs=201.7
Q ss_pred HHHhhcCCCcchhHHHHHHHHhhhcc-CchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcc------------------c
Q 002083 78 AVKMTHDDNLVLKRTGYLAVTLFLNE-DHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL------------------I 138 (969)
Q Consensus 78 vIkl~sS~~~~~KRlgYLals~~~~~-~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I------------------~ 138 (969)
++..+.++|-..|+-+--++..+... .++....+...+.. .+.++.+|-+|...+-++ .
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 44444455555555555555443322 23333222333322 122445555555444443 2
Q ss_pred ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-Cc-chhhHHHHHHHhhcCC--ChhHHHHHHHHHHHhhhhC-
Q 002083 139 NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKS-PS-SVQHLVSNFRKRLCDN--DPGVMGATLCPLFDLITVD- 213 (969)
Q Consensus 139 ~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~-Pe-~v~~l~~~l~~lL~D~--D~~Vv~aAl~~L~ei~~~~- 213 (969)
.++.-+.+-..+.+.|.+.++.| ++++.++..+.+.+ |+ ..+++++.+...+.+. |+.+...|+.+|..++...
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 34455566667788888888889 99999999988874 53 4566788888888887 8888888888887776543
Q ss_pred chhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchH
Q 002083 214 VNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAV 293 (969)
Q Consensus 214 p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AV 293 (969)
+..+....+.++..+.+. +...+ . ...|
T Consensus 163 ~~~~~~~~~~ll~~l~~~------------------------------------------------l~~~~--~--~~~v 190 (462)
T 1ibr_B 163 PEQLQDKSNEILTAIIQG------------------------------------------------MRKEE--P--SNNV 190 (462)
T ss_dssp GGGTGGGHHHHHHHHHHH------------------------------------------------HSTTC--C--CHHH
T ss_pred chhhHhHHHHHHHHHHHH------------------------------------------------hCCCC--C--CHHH
Confidence 322222222233322222 22100 0 0133
Q ss_pred HHHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHH-h----hccccCC
Q 002083 294 LYECICCVSSIYA-------NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQL-A----VIDCLED 361 (969)
Q Consensus 294 lyEaik~I~~l~~-------~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~-~----I~~cL~D 361 (969)
..++++++..+.. ...........|..++.+.+.++|-.++..|..++..+|..+.+|.. . ++.++.|
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (462)
T 1ibr_B 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (462)
T ss_dssp HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444432210 01111223455566677788999999999999999988877665544 3 3446678
Q ss_pred CchHHHHHHHHHhhcccCCC---------------------------cHHHHHHHHHHHHhhcC------ChhhHHHHHH
Q 002083 362 PDDTLKRKTFELLYKMTKSS---------------------------NVEVIVDRMIDYMISIN------DNHYKTEIAS 408 (969)
Q Consensus 362 ~D~sIR~kaLdLL~~L~n~~---------------------------Nv~~IV~eLl~yl~~~~------D~~~k~eli~ 408 (969)
.+..+|..+++.+..++... .+..++..|+.++.+.. +...|..+..
T Consensus 271 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~ 350 (462)
T 1ibr_B 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHH
Confidence 88999999999988887542 12556666767775421 1246777777
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHhhh-Cc---cchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCc
Q 002083 409 RCVELAEQFAPSNHWFIQTMNKVFEHA-GD---LVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLP 484 (969)
Q Consensus 409 ~I~~laekyap~~~W~Id~L~~ll~~~-gd---~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~ 484 (969)
.+..++..+. ++++..++..+... .+ .+....+. .+..|.++...+ ...+.+ ..++..+...+.++. +
T Consensus 351 ~L~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~-~l~~l~~~~~~~--~~~~~l-~~~~~~l~~~l~d~~-~ 422 (462)
T 1ibr_B 351 CLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVM-AFGCILEGPEPS--QLKPLV-IQAMPTLIELMKDPS-V 422 (462)
T ss_dssp HHHHHHHHTT---TTHHHHHHHHHHHHTTCSSHHHHHHHHH-HHHHTSSSSCTT--TTCTTT-TTHHHHHHHGGGCSC-H
T ss_pred HHHHHHHhcc---HHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHhcCCcHH--HHHHHH-HHHHHHHHHHhcCCC-H
Confidence 7888887765 35555555544221 11 12222222 222233322100 011111 345666777776654 3
Q ss_pred hhHHHHHHHHhccccCC
Q 002083 485 SVFLQVICWVLGEYGTA 501 (969)
Q Consensus 485 e~l~~~i~WILGEY~~~ 501 (969)
. .+..++|.+|.|+..
T Consensus 423 ~-Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 423 V-VRDTAAWTVGRICEL 438 (462)
T ss_dssp H-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHh
Confidence 3 466778888888753
No 31
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.00 E-value=3.5e-07 Score=107.68 Aligned_cols=345 Identities=14% Similarity=0.179 Sum_probs=195.2
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHH
Q 002083 146 VLPQVVELLG-HSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKD 219 (969)
Q Consensus 146 l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~ 219 (969)
++|.+.++|. +.++.++..|+.||..+...+++... ..++.|..+|.+.++.|...|+.+|..++.+++. ++.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~ 198 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-FRD 198 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-HHH
Confidence 5677888886 56689999999999999887776432 3678899999999999999999999888766543 222
Q ss_pred HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHH
Q 002083 220 LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECIC 299 (969)
Q Consensus 220 Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik 299 (969)
.+- .. |. .+.|..+|...+.. .....++..++.
T Consensus 199 ~i~----------~~---------g~---------------------------i~~Ll~lL~~~~~~-~~~~~~~~~a~~ 231 (529)
T 3tpo_A 199 LVI----------KH---------GA---------------------------IDPLLALLAVPDLS-TLACGYLRNLTW 231 (529)
T ss_dssp HHH----------HT---------TC---------------------------HHHHHHTTCSSCGG-GSCHHHHHHHHH
T ss_pred HHH----------Hc---------CC---------------------------cHHHHHHHhccchh-HhHHHHHHHHHH
Confidence 210 00 00 01111111111000 000112222333
Q ss_pred HHHhcCC------CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH-----hHHhhccccCCCchHHHH
Q 002083 300 CVSSIYA------NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ-----HQLAVIDCLEDPDDTLKR 368 (969)
Q Consensus 300 ~I~~l~~------~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~-----h~~~I~~cL~D~D~sIR~ 368 (969)
++..+.. .......++..|..+|.+.+++++.-++.+|..++...++.... -...++.+|.+++..++.
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 3322211 12234556778888999989999999999999988766543321 234567788999999999
Q ss_pred HHHHHhhcccCC--CcHHHHHH-----HHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchH
Q 002083 369 KTFELLYKMTKS--SNVEVIVD-----RMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNI 441 (969)
Q Consensus 369 kaLdLL~~L~n~--~Nv~~IV~-----eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ 441 (969)
.++..|..++.. .+...|++ -|...+.+ .+..++.+++..++.++.. ..-....+.+ .
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~----~~~~~~~v~~----~------ 376 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAG----RQDQIQQVVN----H------ 376 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTS----CHHHHHHHHH----T------
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcc----cHHHHHHHHh----c------
Confidence 999999988753 33333332 34455543 5667777777777777642 1111221111 0
Q ss_pred HHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCCCChHHHHHHHHHHHhhc
Q 002083 442 KVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAY 521 (969)
Q Consensus 442 ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~~~~~~Il~~L~~~~~~~ 521 (969)
.++..+++++..+ +++++..++..+..+..... ++ -+.+ +-+.| ++..|++++.
T Consensus 377 g~i~~Lv~lL~~~--------~~~v~~~A~~aL~nl~~~~~-~~----~~~~-l~~~g----------~i~~L~~LL~-- 430 (529)
T 3tpo_A 377 GLVPFLVGVLSKA--------DFKTQKAAAWAITNYTSGGT-VE----QIVY-LVHCG----------IIEPLMNLLS-- 430 (529)
T ss_dssp THHHHHHHHHHSS--------CHHHHHHHHHHHHHHHHHSC-HH----HHHH-HHHTT----------CHHHHHHGGG--
T ss_pred CcHHHHHHHhcCC--------CHHHHHHHHHHHHHHHcCCC-HH----HHHH-HHHCc----------CHHHHHHHhc--
Confidence 1222233344321 23444444444444332111 11 0011 11211 3455666664
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhccccCCC---cHH--HHHHHHHHhcCCChhHHhHHHHHHH
Q 002083 522 SNDETIKAYAITALMKIYAFEIAAGRKVDM---LPE--CQSLIEELSASHSTDLQQRAYELEA 579 (969)
Q Consensus 522 ~e~~~Vk~~ILtAl~KL~~~~~~~~~~~~~---~~~--~~~lL~~~l~s~d~EVQqRA~Ey~~ 579 (969)
..+..++..+|.++..|+-.....+....+ ..+ ..+.|+.+..+.+.||+++|..++.
T Consensus 431 ~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 431 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 346777888888888886432211110000 011 1345666778899999999988764
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.95 E-value=1.4e-06 Score=105.00 Aligned_cols=431 Identities=13% Similarity=0.137 Sum_probs=258.0
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHH-----HHHHHHHhhhcC-ccHHHHHHHHHHHHcccccc-----h-
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLII-----LIVNTIQKDLKS-DNYLIVCAALNAVCKLINEE-----T- 142 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlll-----L~iNtLqKDL~s-~N~~vralALr~Ls~I~~~e-----l- 142 (969)
....++++.+.+...|..+-.++..+...+..... =++..|.+-|.+ .++.++..|+++|.++.... +
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 45566777788888888887777777765543211 124455555554 47888888888877654321 1
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch-----hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh
Q 002083 143 IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV-----QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 143 ~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v-----~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
-...++.+.++|.+.++.||+.|+.++.++...+++.. ...++.|.++|.+.++.+..+++.+|..++..++..-
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHH
Confidence 11367788999999999999999999999998875533 2468899999999999888887777777775444321
Q ss_pred H-----HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhh-----HHHHHHhHhccCCCC
Q 002083 218 K-----DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENM-----YTVVGDIFRKCDSSS 287 (969)
Q Consensus 218 ~-----~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l-----~~iL~~iL~~~~~~~ 287 (969)
. ..++.|+++|+.- ..+-.+...+++|..++... .....+ .+.|..+++..
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~--------------~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll~~~---- 236 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTY--------------TYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDP---- 236 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTC--------------CCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTTTCS----
T ss_pred HHHHHcCChHHHHHHHHcC--------------ChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhcC----
Confidence 1 2345566655320 12334555667777766432 222222 33344444421
Q ss_pred CCCchHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHH---HH--hHHhhcccc
Q 002083 288 NIGNAVLYECICCVSSIYA---NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIA---EQ--HQLAVIDCL 359 (969)
Q Consensus 288 Ni~~AVlyEaik~I~~l~~---~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~---~~--h~~~I~~cL 359 (969)
...+...|+.++.++.. .......++..|..+|.+.+++++..+...|..|...++... .+ -...++.+|
T Consensus 237 --~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL 314 (644)
T 2z6h_A 237 --SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 314 (644)
T ss_dssp --CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH
Confidence 24677888888876642 222334678889999999999999999999999988665322 11 123456666
Q ss_pred CC-Cc-hHHHHHHHHHhhcccCCCc----HH------HHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCch-----H
Q 002083 360 ED-PD-DTLKRKTFELLYKMTKSSN----VE------VIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSN-----H 422 (969)
Q Consensus 360 ~D-~D-~sIR~kaLdLL~~L~n~~N----v~------~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~-----~ 422 (969)
.+ ++ ..++..++..|..|+.... .+ ..+..|.+.+.+..+..++++++..+..++..- ... .
T Consensus 315 ~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~-~~~~~i~~~ 393 (644)
T 2z6h_A 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQ 393 (644)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHT
T ss_pred HccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH-HHHHHHHHc
Confidence 55 33 6899999999999986321 11 245666677765434578899988888887421 111 1
Q ss_pred HHHHHHHHHHhhhCcc------------------chHHHHHHHHHHHhcccCCCccccchhHHH-----HHHHHHHHHhC
Q 002083 423 WFIQTMNKVFEHAGDL------------------VNIKVAHNLMRLIAEGFGEDDDNADSQLRS-----SAVESYLRIIG 479 (969)
Q Consensus 423 W~Id~L~~ll~~~gd~------------------v~~ev~~~li~lI~~~~g~~~~~~~p~lr~-----~av~~l~~lL~ 479 (969)
-.+..|++++...... -.+++....+..+..-. .++..+. .++..+++++.
T Consensus 394 ~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La------~~~~~~~~l~~~~~i~~Lv~lL~ 467 (644)
T 2z6h_A 394 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA------RDVHNRIVIRGLNTIPLFVQLLY 467 (644)
T ss_dssp THHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHT------TSHHHHHHHHHTTCHHHHHHHTT
T ss_pred CCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHh------cCHHHHHHHHhCCcHHHHHHHHc
Confidence 1233445554331110 01223222222222110 0122222 24567778886
Q ss_pred CCCCchhHHHHHHHHhccccCCCCCCChHH-----HHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 002083 480 EPKLPSVFLQVICWVLGEYGTADGKVSASY-----ITGKLCDVAEAYSNDETIKAYAITALMKIY 539 (969)
Q Consensus 480 d~~~~e~l~~~i~WILGEY~~~~~~~~~~~-----Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~ 539 (969)
+.. ++ .++.++|++++.+.... .... .++.|.++.. .+++.||.....++.++.
T Consensus 468 ~~~-~~-v~~~a~~aL~~l~~~~~--~~~~i~~~g~l~~L~~ll~--~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 468 SPI-EN-IQRVAAGVLCELAQDKE--AAEAIEAEGATAPLTELLH--SRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp CSC-HH-HHHHHHHHHHHHHTSHH--HHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHT
T ss_pred CCC-HH-HHHHHHHHHHHHHcCHH--HHHHHHHcCChhHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 543 33 46677899888764210 0000 1223333322 456677777777777664
No 33
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.93 E-value=1.1e-07 Score=101.93 Aligned_cols=225 Identities=12% Similarity=0.037 Sum_probs=162.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHH
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVS 226 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~ 226 (969)
++.+.+.|.|+++.||..|+.++.++- .| ..++.+.++|.|.|+.|...|+.+|..+.. ..... +.++.
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~----~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG--GQ----DAVRLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCE----DNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC--CH----HHHHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTH----HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--Cc----hHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccc----hHHHH
Confidence 466788999999999999999999875 23 356777888999999999998888766542 22222 33444
Q ss_pred HHHH-HHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC
Q 002083 227 ILKQ-VAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY 305 (969)
Q Consensus 227 iLk~-l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~ 305 (969)
+|.+ +.. -++++.+...++.|..++..++.......+.|...++.. ...|.+.++.++..+.
T Consensus 94 ~L~~~~~~-----------d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~------~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 94 ILNNMALN-----------DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK------STNVRRATAFAISVIN 156 (280)
T ss_dssp HHHHHHHH-----------CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS------CHHHHHHHHHHHHTC-
T ss_pred HHHHHHhc-----------CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC------CHHHHHHHHHHHHhcC
Confidence 4432 111 147889999999999887544433445556666666532 2579999999998775
Q ss_pred CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHH
Q 002083 306 ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEV 385 (969)
Q Consensus 306 ~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~ 385 (969)
.. .++..|..++.+.++.+|+.++..|..+....+..+ ..++.+|+|+|..+|..++..|..+.++..+..
T Consensus 157 ~~-----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~ 227 (280)
T 1oyz_A 157 DK-----ATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIR----DCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSV 227 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHH----HHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CH-----HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHH----HHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHH
Confidence 42 256778888999999999999999998865555554 456678899999999999999999998775554
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002083 386 IVDRMIDYMISINDNHYKTEIASRCVELAE 415 (969)
Q Consensus 386 IV~eLl~yl~~~~D~~~k~eli~~I~~lae 415 (969)
++ ..+. |.++|..++.+++.+..
T Consensus 228 L~----~~l~---d~~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 228 LC----DELK---KNTVYDDIIEAAGELGD 250 (280)
T ss_dssp HH----HHHT---SSSCCHHHHHHHHHHCC
T ss_pred HH----HHhc---CccHHHHHHHHHHhcCc
Confidence 44 4443 34588888888877754
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.92 E-value=1.5e-06 Score=102.03 Aligned_cols=322 Identities=13% Similarity=0.160 Sum_probs=216.6
Q ss_pred CcchHHHHHHhhcCCCcchhHHHHHHHHhhhc--cCchH--HHH--HHHHHHhhhc-CccHHHHHHHHHHHHccc--ccc
Q 002083 71 ASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLN--EDHDL--IIL--IVNTIQKDLK-SDNYLIVCAALNAVCKLI--NEE 141 (969)
Q Consensus 71 vsf~~~~vIkl~sS~~~~~KRlgYLals~~~~--~~~dl--llL--~iNtLqKDL~-s~N~~vralALr~Ls~I~--~~e 141 (969)
..|..-++|+.+.|+|...+.-+--++-.++. .+|.+ ++- ++..|.+-|+ +.++.++..|..+|++|. +++
T Consensus 55 ~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 55 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 35668899999999999988887777765553 34432 221 3556667775 456888888888888874 333
Q ss_pred hHh-----hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChh-----HHHHHHHHH
Q 002083 142 TIP-----AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPG-----VMGATLCPL 206 (969)
Q Consensus 142 l~~-----~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~-----Vv~aAl~~L 206 (969)
... -.+|.+.++|.++++.||..|+.||..+....|+.-. ..++.+..+|.+.+.. ++..+...+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 332 2578899999999999999999999999887776432 2467788888765533 455566666
Q ss_pred HHhhhhCc-h----hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-----hHHHH
Q 002083 207 FDLITVDV-N----SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-----MYTVV 276 (969)
Q Consensus 207 ~ei~~~~p-~----~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-----l~~iL 276 (969)
..++.... . ....++|.++++|. -.++..+......|..++..+....+. +.+.|
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~---------------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 279 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLH---------------HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTT---------------CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHh---------------cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhh
Confidence 66665332 1 12344455555442 247788889999999988765543322 34556
Q ss_pred HHhHhccCCCCCCCchHHHHHHHHHHhcCC-CHHHHHH-----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH
Q 002083 277 GDIFRKCDSSSNIGNAVLYECICCVSSIYA-NPKLIES-----AADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ 350 (969)
Q Consensus 277 ~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~-~~~ll~~-----ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~ 350 (969)
..+|++. ...|...+++++.++.. +...... ++..|..+|.+.+.++|.-+..+|..|+..++.....
T Consensus 280 v~lL~~~------~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 280 VKLLGAT------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp HHHHTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhhhcCC------ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 6667643 24788999999988754 3332222 3456778888889999999999999998876654321
Q ss_pred -----hHHhhccccCCCchHHHHHHHHHhhcccCCCcHHH---H-----HHHHHHHHhhcCChhhHHHHHHHHHHHh
Q 002083 351 -----HQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEV---I-----VDRMIDYMISINDNHYKTEIASRCVELA 414 (969)
Q Consensus 351 -----h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~---I-----V~eLl~yl~~~~D~~~k~eli~~I~~la 414 (969)
-...++.+|.+.|..+|+.|.-.|..++...+.+. + ++-|.+.+. ..|..++..++..+..+.
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 12356778889999999999999998876544432 2 445555554 357666666655544443
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.91 E-value=2.6e-06 Score=105.09 Aligned_cols=408 Identities=13% Similarity=0.103 Sum_probs=268.3
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCC-C------cch-HHHHHHhhcCCCcchhHHHHH
Q 002083 24 RSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHD-A------SFG-YIHAVKMTHDDNLVLKRTGYL 95 (969)
Q Consensus 24 ks~~eE~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~D-v------sf~-~~~vIkl~sS~~~~~KRlgYL 95 (969)
++..+.+.+-...-.-|+.+|.+++++.+- .+++-+. ....|-. + .-| ...++.+++|++...++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~alt-~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~ 312 (810)
T 3now_A 236 YYDEAKARFTDQIDEYIKDKLLAPDMESKV--RVTVAIT-ALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACE 312 (810)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSSCCHHHHH--HHHHHHH-HHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhccCChHhHH--HHHHHHH-HHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHH
Confidence 444444555555566788899888776542 3443332 2335542 1 223 345678999999999999999
Q ss_pred HHHhhhccCchHHH----HHHHHHHhhhcCccHHHHHHHHHHHHcccc--------cch----HhhHHHHHHHhcCCC--
Q 002083 96 AVTLFLNEDHDLII----LIVNTIQKDLKSDNYLIVCAALNAVCKLIN--------EET----IPAVLPQVVELLGHS-- 157 (969)
Q Consensus 96 als~~~~~~~dlll----L~iNtLqKDL~s~N~~vralALr~Ls~I~~--------~el----~~~l~~~V~~lL~d~-- 157 (969)
++...... ++..- .-+..|.+=+++.++.+|..|+-+||++.. +.+ ++.+++.+.++|.++
T Consensus 313 al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~ 391 (810)
T 3now_A 313 CLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGK 391 (810)
T ss_dssp HHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCC
Confidence 99886554 44222 224667777778899999999999999862 222 356788889999888
Q ss_pred ChHHHHHHHHHHHHHHhhCCc---chh--hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc-h----------------
Q 002083 158 KEAVRRKAIMALHRFYQKSPS---SVQ--HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV-N---------------- 215 (969)
Q Consensus 158 ~pyVRKkA~lal~kiy~~~Pe---~v~--~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p-~---------------- 215 (969)
++-+|+.|+-+|..+-...+. ++. .+++.|.++|...|+.++..|+.+|..+..... +
T Consensus 392 d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~ 471 (810)
T 3now_A 392 DKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQH 471 (810)
T ss_dssp CSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCS
T ss_pred CHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhcc
Confidence 889999999999987654332 221 478888899988999999999999998886321 0
Q ss_pred -----------hhH---------HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhh---
Q 002083 216 -----------SYK---------DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENM--- 272 (969)
Q Consensus 216 -----------~~~---------~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l--- 272 (969)
..+ ..+|.|+.+|+ -++|=.|......|..++. +++....+
T Consensus 472 v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~---------------s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~ 535 (810)
T 3now_A 472 IPEEHELDDVDFINKRITVLANEGITTALCALAK---------------TESHNSQELIARVLNAVCG-LKELRGKVVQE 535 (810)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHT---------------CCCHHHHHHHHHHHHHHHT-SHHHHHHHHHT
T ss_pred CccccccccHHHHHHHHHHHHHCcCHHHHHHHHc---------------CCCHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence 011 23455555553 1468889999999999974 44333332
Q ss_pred --HHHHHHhHhccCCCCCCCchHHHHHHHHHHhc--CCCHHH------HHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHH
Q 002083 273 --YTVVGDIFRKCDSSSNIGNAVLYECICCVSSI--YANPKL------IESAADVIARFLKSD-SHNLKYMGIDALGRLI 341 (969)
Q Consensus 273 --~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l--~~~~~l------l~~ai~~L~~fL~s~-d~NlrYvaL~~L~~I~ 341 (969)
.+.|-.+|+..+ ..+...|+.++.++ ..+++. ...++.+|..+|.+. +...++-++.+|..|+
T Consensus 536 Gaip~Lv~LL~s~~------~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 536 GGVKALLRMALEGT------EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp THHHHHHHHHHSSC------HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHccCC------HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 456666776431 35677888888765 344443 123688899999764 3345688999999999
Q ss_pred hhChhH----HH-HhHHhhccccCCCchHHHHHHHHHhhcccCCCcH-HH------HHHHHHHHHhhcCChhhHHHHHHH
Q 002083 342 KTSPEI----AE-QHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNV-EV------IVDRMIDYMISINDNHYKTEIASR 409 (969)
Q Consensus 342 ~~~P~l----~~-~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv-~~------IV~eLl~yl~~~~D~~~k~eli~~ 409 (969)
...++. +. .....++.+|.+++..|++.|+++|..|+..... .. .+.-|+.++. ..|...+++++.+
T Consensus 610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~-s~d~~vq~~Aa~A 688 (810)
T 3now_A 610 SMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE-DEDEETATACAGA 688 (810)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG-CSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc-CCCHHHHHHHHHH
Confidence 775432 22 1345678888899999999999999998864322 22 2334444454 3677888888888
Q ss_pred HHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhC
Q 002083 410 CVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIG 479 (969)
Q Consensus 410 I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~ 479 (969)
++.++... ...++.++ .. ...+..+++++.. .+.+++..++..+..+..
T Consensus 689 LanLt~~s----~~~~~~ii---~~------~g~I~~Lv~LL~s--------~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 689 LAIITSVS----VKCCEKIL---AI------ASWLDILHTLIAN--------PSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHC----HHHHHHHH---TS------TTHHHHHHHHHTC--------SSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCC----HHHHHHHH---HH------cCCHHHHHHHHCC--------CCHHHHHHHHHHHHHHHh
Confidence 88877531 11112111 11 1123345566653 256788888888888876
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.86 E-value=2.5e-06 Score=100.05 Aligned_cols=254 Identities=14% Similarity=0.206 Sum_probs=174.4
Q ss_pred HHHHHHHhcCC-CChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHH
Q 002083 146 VLPQVVELLGH-SKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKD 219 (969)
Q Consensus 146 l~~~V~~lL~d-~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~ 219 (969)
++|.+.++|.+ .++.|+..|+-||..|..-+++... ..++.|.++|.+.++.|...|+.+|..++.+++. ++.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~ 179 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRD 179 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHH
Confidence 57888999975 5689999999999999887776543 3688999999999999999999999999876553 233
Q ss_pred H------HHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCCh-----HHHhhhHHHHHHhHhccCCCCC
Q 002083 220 L------VISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDK-----QASENMYTVVGDIFRKCDSSSN 288 (969)
Q Consensus 220 L------v~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~-----~~se~l~~iL~~iL~~~~~~~N 288 (969)
. ++.++.+|.. .+.. ......+-.+...|..++.... .....+.+.|..+++..
T Consensus 180 ~v~~~G~i~~Ll~lL~~---------~~~~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~----- 244 (510)
T 3ul1_B 180 LVIKHGAIDPLLALLAV---------PDLS-TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN----- 244 (510)
T ss_dssp HHHHTTCHHHHHHHTCS---------SCGG-GSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHcCChHHHHHHHHh---------ccch-hhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-----
Confidence 2 2344444321 0000 1122233445555555554321 12234556666666643
Q ss_pred CCchHHHHHHHHHHhcCCCH-HHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH-----hHHhhcc
Q 002083 289 IGNAVLYECICCVSSIYANP-KLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ-----HQLAVID 357 (969)
Q Consensus 289 i~~AVlyEaik~I~~l~~~~-~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~-----h~~~I~~ 357 (969)
..-|+..++.++.++...+ +..+ .++..|..+|.+.+..++.-++.+|..|+..++..... -...++.
T Consensus 245 -~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~ 323 (510)
T 3ul1_B 245 -DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 323 (510)
T ss_dssp -CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-
T ss_pred -CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHH
Confidence 2468888888888876543 2222 24667899999999999999999999998776543221 2235677
Q ss_pred ccCCCchHHHHHHHHHhhcccC--CCcHHH-----HHHHHHHHHhhcCChhhHHHHHHHHHHHhhhc
Q 002083 358 CLEDPDDTLKRKTFELLYKMTK--SSNVEV-----IVDRMIDYMISINDNHYKTEIASRCVELAEQF 417 (969)
Q Consensus 358 cL~D~D~sIR~kaLdLL~~L~n--~~Nv~~-----IV~eLl~yl~~~~D~~~k~eli~~I~~laeky 417 (969)
+|.+++..||+.+.-.|..|+. +++... ++..|+..+.. .+..++++++.+|+.++..-
T Consensus 324 LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccC
Confidence 8899999999999999999874 333433 45567777765 67889999999999988753
No 37
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.84 E-value=4.4e-06 Score=98.33 Aligned_cols=318 Identities=12% Similarity=0.143 Sum_probs=210.6
Q ss_pred cchHHHHHHhhcCCCcchhHHHHHHHHhhhc--cCchHHHH----HHHHHHhhhc-CccHHHHHHHHHHHHcccc--cch
Q 002083 72 SFGYIHAVKMTHDDNLVLKRTGYLAVTLFLN--EDHDLIIL----IVNTIQKDLK-SDNYLIVCAALNAVCKLIN--EET 142 (969)
Q Consensus 72 sf~~~~vIkl~sS~~~~~KRlgYLals~~~~--~~~dlllL----~iNtLqKDL~-s~N~~vralALr~Ls~I~~--~el 142 (969)
.....++++.+.|+|...+.-+.-++..++. .++-+-.+ ++..|.+-|. +.++.++..|..+|++|.. ++-
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 4557889999999999887777777665553 33322111 3445555664 5678888888888887753 222
Q ss_pred Hh-----hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChh-----HHHHHHHHHH
Q 002083 143 IP-----AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPG-----VMGATLCPLF 207 (969)
Q Consensus 143 ~~-----~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~-----Vv~aAl~~L~ 207 (969)
.. -.+|.+.++|.++++.||..|+.||..+...+|+.-. ..++.+..+|.+.+.. ++..+...+.
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 22 2567889999999999999999999999987776432 2467778888765533 4455666666
Q ss_pred HhhhhCc-h----hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-----hHHHHH
Q 002083 208 DLITVDV-N----SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-----MYTVVG 277 (969)
Q Consensus 208 ei~~~~p-~----~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-----l~~iL~ 277 (969)
.++.... . ....++|.++.+|. ..++..+......|..+........+. +.+.|.
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~---------------~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv 299 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLH---------------HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 299 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTT---------------SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhc---------------CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHH
Confidence 6665432 1 12334455555442 146778888888888887665443222 345566
Q ss_pred HhHhccCCCCCCCchHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH-
Q 002083 278 DIFRKCDSSSNIGNAVLYECICCVSSIYA-NPKLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ- 350 (969)
Q Consensus 278 ~iL~~~~~~~Ni~~AVlyEaik~I~~l~~-~~~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~- 350 (969)
.+|.+. ...|...|++++.++.. ++.... .++..|..+|.+.+.++|.-++.+|..|+..++.....
T Consensus 300 ~lL~~~------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v 373 (529)
T 3tpo_A 300 KLLGAT------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 373 (529)
T ss_dssp HHHTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHhcCC------ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 666643 24788899999988854 333222 24567889999999999999999999999877654322
Q ss_pred ----hHHhhccccCCCchHHHHHHHHHhhcccCCCc---HHHH-----HHHHHHHHhhcCChhhHHHHHHHHH
Q 002083 351 ----HQLAVIDCLEDPDDTLKRKTFELLYKMTKSSN---VEVI-----VDRMIDYMISINDNHYKTEIASRCV 411 (969)
Q Consensus 351 ----h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~N---v~~I-----V~eLl~yl~~~~D~~~k~eli~~I~ 411 (969)
-...++.+|.+.+..+|+.|.-.|..++...+ +..+ +.-|.+.+. ..|..++..++.++.
T Consensus 374 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~ 445 (529)
T 3tpo_A 374 VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAIS 445 (529)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-CCCHHHHHHHHHHHH
Confidence 12356778889999999999999988875444 3333 344555554 356666555544443
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.80 E-value=1.5e-05 Score=98.37 Aligned_cols=312 Identities=13% Similarity=0.103 Sum_probs=222.3
Q ss_pred hhcCCCcchhHHHHHHHHhhhccCchHHHH------HHHHHHhhhcCccHHHHHHHHHHHHcccccchHh-----hHHHH
Q 002083 81 MTHDDNLVLKRTGYLAVTLFLNEDHDLIIL------IVNTIQKDLKSDNYLIVCAALNAVCKLINEETIP-----AVLPQ 149 (969)
Q Consensus 81 l~sS~~~~~KRlgYLals~~~~~~~dlllL------~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~-----~l~~~ 149 (969)
.+...+...|-.+.-+++.++.-.+|..-- ++..|.+=+.|+++.++..|+.+++++....-.. .-.+.
T Consensus 255 ~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~ 334 (810)
T 3now_A 255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDI 334 (810)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHH
T ss_pred HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHH
Confidence 556788888888888999999888775532 3466777788999999988888888766543322 22378
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhh---CCc-------chhhHHHHHHHhhcCC--ChhHHHHHHHHHHHhhhhCchhh
Q 002083 150 VVELLGHSKEAVRRKAIMALHRFYQK---SPS-------SVQHLVSNFRKRLCDN--DPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 150 V~~lL~d~~pyVRKkA~lal~kiy~~---~Pe-------~v~~l~~~l~~lL~D~--D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
+..++...++.+|..|+.+|.|+-.. +|. .+..+++.|.++|.+. |+.|...|+-.|..+.. +++..
T Consensus 335 L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk 413 (810)
T 3now_A 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECK 413 (810)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHH
Confidence 88999988899999999999999642 221 2456788899999877 89999999988887764 33322
Q ss_pred ------HHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCCh-H-----------------------
Q 002083 218 ------KDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDK-Q----------------------- 267 (969)
Q Consensus 218 ------~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~-~----------------------- 267 (969)
...+|.|+.+|+. .++=+|...+.+|..+....+ +
T Consensus 414 ~~lv~d~g~Ip~LV~LL~s---------------~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~l 478 (810)
T 3now_A 414 EKLIEDKASIHALMDLARG---------------GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHEL 478 (810)
T ss_dssp HHHHHCHHHHHHHHHHHHT---------------TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCH
T ss_pred HHHHHccchHHHHHHHhCC---------------CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccc
Confidence 2456777777762 255678888888888876421 0
Q ss_pred ----HH----hh-----hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHhcCCChhH
Q 002083 268 ----AS----EN-----MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIES-----AADVIARFLKSDSHNL 329 (969)
Q Consensus 268 ----~s----e~-----l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~-----ai~~L~~fL~s~d~Nl 329 (969)
.. +. ..+.|..++++. ...|.-+|+.++.++..+++.+.. ++.+|..+|.+.++..
T Consensus 479 d~~~~v~~r~~~VveaGaVp~LV~LL~s~------s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~ 552 (810)
T 3now_A 479 DDVDFINKRITVLANEGITTALCALAKTE------SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKG 552 (810)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTCC------CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHHHHHHcCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHH
Confidence 00 11 234555566532 257889999999999777654433 5678999999988999
Q ss_pred HHHHHHHHHHHHhh-ChhHHH------HhHHhhccccCCC-chHHHHHHHHHhhcccCC--CcHHHHHH-----HHHHHH
Q 002083 330 KYMGIDALGRLIKT-SPEIAE------QHQLAVIDCLEDP-DDTLKRKTFELLYKMTKS--SNVEVIVD-----RMIDYM 394 (969)
Q Consensus 330 rYvaL~~L~~I~~~-~P~l~~------~h~~~I~~cL~D~-D~sIR~kaLdLL~~L~n~--~Nv~~IV~-----eLl~yl 394 (969)
|-.+..+|..|+.. +|..+- .-...++.+|..+ +...+..|+..|..|+.. +|.+.|++ .|.+++
T Consensus 553 k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL 632 (810)
T 3now_A 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL 632 (810)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998864 565431 2234556667644 344556799999999874 45555544 577777
Q ss_pred hhcCChhhHHHHHHHHHHHhh
Q 002083 395 ISINDNHYKTEIASRCVELAE 415 (969)
Q Consensus 395 ~~~~D~~~k~eli~~I~~lae 415 (969)
.+ .+..+++..+..|+.++.
T Consensus 633 ~s-~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 633 ME-DHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HS-CCTTHHHHHHHHHHHHTT
T ss_pred cC-CCHHHHHHHHHHHHHHhC
Confidence 65 566889999999998885
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.73 E-value=4.8e-07 Score=92.61 Aligned_cols=88 Identities=27% Similarity=0.272 Sum_probs=69.6
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhh
Q 002083 112 VNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRL 191 (969)
Q Consensus 112 iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL 191 (969)
+..|.+.|.++++.+|..|+..|+.+..++ ..+.+.++|.|+++.||..|+.++.++- +++ .++.+.++|
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~--~~~----~~~~L~~~l 90 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDER----AVEPLIKALKDEDAWVRRAAADALGQIG--DER----AVEPLIKAL 90 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGG----GHHHHHHHTTCSCHHHHHHHHHHHHHHC--CGG----GHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHcCCCHHHHHHHHHHHHhhC--CHH----HHHHHHHHH
Confidence 455666788899999999999999988754 4566678888999999999999998875 233 456677788
Q ss_pred cCCChhHHHHHHHHHHHh
Q 002083 192 CDNDPGVMGATLCPLFDL 209 (969)
Q Consensus 192 ~D~D~~Vv~aAl~~L~ei 209 (969)
.|.|+.|..+|+..|..+
T Consensus 91 ~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp TCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 899999988888777655
No 40
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.71 E-value=1.4e-06 Score=90.34 Aligned_cols=178 Identities=18% Similarity=0.221 Sum_probs=116.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHH--
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKD-- 219 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~-- 219 (969)
++.+.++|.+.++.+|..|+.++..+....++... ..++.+.++|.+.|+.|...|+.+|..++..++.....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 57788899998999999999999999888775433 36788889999999999999999998887665543222
Q ss_pred ---HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhh-----HHHHHHhHhccCCCCCCCc
Q 002083 220 ---LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENM-----YTVVGDIFRKCDSSSNIGN 291 (969)
Q Consensus 220 ---Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l-----~~iL~~iL~~~~~~~Ni~~ 291 (969)
.++.++.+|+ -.++..+...+..|..++..++...+.+ .+.|..+++.. ..
T Consensus 84 ~~~~i~~l~~ll~---------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~------~~ 142 (252)
T 4hxt_A 84 DAGGVEVLVKLLT---------------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST------DS 142 (252)
T ss_dssp HTTHHHHHHHHTT---------------CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS------CH
T ss_pred HCCCHHHHHHHHc---------------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC------CH
Confidence 2344444432 1478899999999999997665543332 33444444422 13
Q ss_pred hHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh
Q 002083 292 AVLYECICCVSSIYA-NPKLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTSP 345 (969)
Q Consensus 292 AVlyEaik~I~~l~~-~~~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P 345 (969)
.+...|+.++.++.. ++...+ .++..|..++.+.+++++..++..|..|+..++
T Consensus 143 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 202 (252)
T 4hxt_A 143 EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT 202 (252)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 566666666666643 222111 144555556655556666666666665554433
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.68 E-value=2.4e-06 Score=88.63 Aligned_cols=218 Identities=18% Similarity=0.177 Sum_probs=155.3
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHcccccc--hH-----hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh---
Q 002083 112 VNTIQKDLKSDNYLIVCAALNAVCKLINEE--TI-----PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ--- 181 (969)
Q Consensus 112 iNtLqKDL~s~N~~vralALr~Ls~I~~~e--l~-----~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~--- 181 (969)
+..|.+-|+++++.++..|+.+|+++.... .. ..+++.+.++|.+.++.||..|+.++..+...+++...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456677788888989999999988875432 22 13678889999999999999999999999887666443
Q ss_pred --hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH-HHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHH
Q 002083 182 --HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV-ISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKIL 258 (969)
Q Consensus 182 --~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv-~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL 258 (969)
..++.+..+|.+.|+.|...|+.+|..++..++.....++ ...+..|.+++. -.++..+...+..|
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-----------~~~~~~~~~a~~~L 152 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----------STDSEVQKEAARAL 152 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----------CSCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-----------CCCHHHHHHHHHHH
Confidence 3688888999999999999999999998866554332222 112333333322 14789999999999
Q ss_pred HHhCCCChHHHhh-----hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHHhcCCCh
Q 002083 259 ALLGSGDKQASEN-----MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA-NPKLIE-----SAADVIARFLKSDSH 327 (969)
Q Consensus 259 ~~l~~~d~~~se~-----l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~-~~~ll~-----~ai~~L~~fL~s~d~ 327 (969)
..++..++...+. ..+.|..+++.. ...|...|+.++..+.. ++...+ .++..|..++.+.++
T Consensus 153 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 153 ANIASGPDEAIKAIVDAGGVEVLVKLLTST------DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCH
T ss_pred HHHHcCCHHHHHHHHHCcCHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcH
Confidence 9998876544333 344555555532 24688888888887764 333322 256778888888888
Q ss_pred hHHHHHHHHHHHHHhhChh
Q 002083 328 NLKYMGIDALGRLIKTSPE 346 (969)
Q Consensus 328 NlrYvaL~~L~~I~~~~P~ 346 (969)
.+|..++..|..|....+.
T Consensus 227 ~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHHHcCCCc
Confidence 8888888888888876543
No 42
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.62 E-value=4.5e-07 Score=101.95 Aligned_cols=239 Identities=15% Similarity=0.194 Sum_probs=148.7
Q ss_pred HHhhhcCccHHHHH---HHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhh
Q 002083 115 IQKDLKSDNYLIVC---AALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRL 191 (969)
Q Consensus 115 LqKDL~s~N~~vra---lALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL 191 (969)
+.|=++++|...+= +++..++.. .++++ -+...+.+=++|++|+||-.|+-++.++ ..|+.++.+.+.++++|
T Consensus 73 v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I--~~~~m~~~l~~~lk~~L 148 (355)
T 3tjz_B 73 MTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQI--TDSTMLQAIERYMKQAI 148 (355)
T ss_dssp HHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHH--CCTTTHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcC--CCHHHHHHHHHHHHHHc
Confidence 45677888876654 566666665 45555 7889999999999999999999999988 57999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh
Q 002083 192 CDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN 271 (969)
Q Consensus 192 ~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~ 271 (969)
.|+||.|..+|+...+.++..+|+..+ .|++-+++++.. .+|+.|...+.+|..+...|+....+
T Consensus 149 ~d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~~ll~d-----------~n~~V~~~Al~lL~ei~~~d~~a~~k 213 (355)
T 3tjz_B 149 VDKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQEAASS-----------DNIMVQYHALGLLYHVRKNDRLAVSK 213 (355)
T ss_dssp TCSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHHHHTTC-----------SSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHhcC-----------CCccHHHHHHHHHHHHHhhchHHHHH
Confidence 999999999998888889888887544 455555555431 48899999999998888766543333
Q ss_pred hHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHH
Q 002083 272 MYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYAN--PKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAE 349 (969)
Q Consensus 272 l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~--~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~ 349 (969)
+ +..+ ... .-.+ .-...+-++.+..+.+. ++..+...+.|..+|++.++-+.|-+.+.|..|....+..+.
T Consensus 214 L---v~~l-~~~-~l~~--~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~ 286 (355)
T 3tjz_B 214 M---ISKF-TRH-GLKS--PFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELA 286 (355)
T ss_dssp H---HHHH-HSS-CCSC--HHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred H---HHHH-hcC-CCcC--hHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHH
Confidence 3 2222 211 0111 23344566766555443 344455667777777777777888888877776553334433
Q ss_pred HhHHhhccccCCCchHHHHHHHHHhhcccC
Q 002083 350 QHQLAVIDCLEDPDDTLKRKTFELLYKMTK 379 (969)
Q Consensus 350 ~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n 379 (969)
.-...+-.+|..+|..+|--+|+.|..++.
T Consensus 287 ~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 287 PAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp -CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 322233334566777788888877777654
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.62 E-value=2e-06 Score=87.27 Aligned_cols=89 Identities=27% Similarity=0.263 Sum_probs=67.6
Q ss_pred HHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHh
Q 002083 111 IVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKR 190 (969)
Q Consensus 111 ~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~l 190 (969)
....+.+.|.++++.+|..|+..|+.+..++. .+.+.++|.|+++.||..|+.++.++- +++ .++.+.++
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~----~~~L~~~l~~~~~~vr~~a~~~L~~~~--~~~----~~~~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERA----VEPLIKALKDEDAWVRRAAADALGQIG--DER----AVEPLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHC--CGG----GHHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHcCCCHHHHHHHHHHHHhhC--CHH----HHHHHHHH
Confidence 45667778888899999999999888877543 456677888888899999888888764 233 35666677
Q ss_pred hcCCChhHHHHHHHHHHHh
Q 002083 191 LCDNDPGVMGATLCPLFDL 209 (969)
Q Consensus 191 L~D~D~~Vv~aAl~~L~ei 209 (969)
|.|.|+.|..+|+..|..+
T Consensus 85 l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHh
Confidence 8888888888887777654
No 44
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.62 E-value=5.1e-06 Score=83.96 Aligned_cols=210 Identities=15% Similarity=0.197 Sum_probs=147.5
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHH-HHHHHHHHHhhhhCchhhHHHHHH
Q 002083 145 AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVM-GATLCPLFDLITVDVNSYKDLVIS 223 (969)
Q Consensus 145 ~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv-~aAl~~L~ei~~~~p~~~~~Lv~~ 223 (969)
.++..+...|.|.-.-|||+|+..+..+.+.+|++...++.++.-++.-....=. ...-.+|-.+...+|+..++.+|-
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~ 111 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPV 111 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHH
Confidence 4567788888888888999999999999999999988888888877643322212 111223444455566655444432
Q ss_pred HHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHh
Q 002083 224 FVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSS 303 (969)
Q Consensus 224 lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~ 303 (969)
+ +..|..+|++..-.|--.|.++.+
T Consensus 112 l---------------------------------fanyrigd~kikIn~~yaLeeIar---------------------- 136 (253)
T 2db0_A 112 L---------------------------------FANYRIGDEKTKINVSYALEEIAK---------------------- 136 (253)
T ss_dssp H---------------------------------HHHSCCCSHHHHHHHHHHHHHHHH----------------------
T ss_pred H---------------------------------HHHHhcCCccceecHHHHHHHHHH----------------------
Confidence 2 334444555433223233433333
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhccc--CCC
Q 002083 304 IYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMT--KSS 381 (969)
Q Consensus 304 l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~--n~~ 381 (969)
.||+++...+.-+..++.|+|..=|..+|.-|..|...++.++.++...++.+|+|.|..+|.-|.+.|..++ |+.
T Consensus 137 --anP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 137 --ANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp --HCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred --hChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH
Confidence 2588888889999999999999999999999999999999999999999999999999999999999998875 444
Q ss_pred cHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 002083 382 NVEVIVDRMIDYMISINDNHYKTEIASRCVEL 413 (969)
Q Consensus 382 Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~l 413 (969)
+..||.+-++-+.+.++ .+..++...+..+
T Consensus 215 -lRkii~~kl~e~~D~S~-lv~~~V~egL~rl 244 (253)
T 2db0_A 215 -LRKVVIKRLEELNDTSS-LVNKTVKEGISRL 244 (253)
T ss_dssp -HHHHHHHHHHHCCCSCH-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCcHH-HHHHHHHHHHHHH
Confidence 66666666666655322 3444444444433
No 45
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.57 E-value=4.8e-06 Score=87.05 Aligned_cols=217 Identities=14% Similarity=0.194 Sum_probs=152.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHH
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDL 220 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~L 220 (969)
-.+.+.++|.+.++-+|..|+.++.++....++... ..++.+.++|.+.++.|...|+.+|..++..++.....+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 357788888899999999999999887765444332 367888899999999999999988888876555433222
Q ss_pred HH-HHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhh-----hHHHHHHhHhccCCCCCCCchHH
Q 002083 221 VI-SFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASEN-----MYTVVGDIFRKCDSSSNIGNAVL 294 (969)
Q Consensus 221 v~-~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~-----l~~iL~~iL~~~~~~~Ni~~AVl 294 (969)
+. ..+..|.+++.. +++-.+...+..|..++..++..... ..+.|..+|+.. ...|.
T Consensus 93 ~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~v~ 155 (252)
T 4db8_A 93 IDAGALPALVQLLSS-----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP------NEQIL 155 (252)
T ss_dssp HHTTHHHHHHHGGGC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS------CHHHH
T ss_pred HHcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC------CHHHH
Confidence 21 133333333321 46788999999999998876543122 345566666532 24788
Q ss_pred HHHHHHHHhcCC-CHHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH-----hHHhhccccCCCc
Q 002083 295 YECICCVSSIYA-NPKLIE-----SAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ-----HQLAVIDCLEDPD 363 (969)
Q Consensus 295 yEaik~I~~l~~-~~~ll~-----~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~-----h~~~I~~cL~D~D 363 (969)
.+++.++.++.. +++..+ .++..|..++.+.++.++..++..|..|+..++..... -...++.++.++|
T Consensus 156 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 235 (252)
T 4db8_A 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC
Confidence 899999988865 333322 24678888998888999999999999998776654322 2345777888888
Q ss_pred hHHHHHHHHHhhcccC
Q 002083 364 DTLKRKTFELLYKMTK 379 (969)
Q Consensus 364 ~sIR~kaLdLL~~L~n 379 (969)
..+|+.|+..|..|+.
T Consensus 236 ~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 236 EKIQKEAQEALEKLQS 251 (252)
T ss_dssp SHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999998888774
No 46
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.55 E-value=2.2e-05 Score=88.76 Aligned_cols=315 Identities=12% Similarity=0.114 Sum_probs=188.1
Q ss_pred CcchhHHHHHHHHhhhcc----------------CchHHHHHHHHHHhhhcCccHHH--HHHHHHHHHcccccc-hHhhH
Q 002083 86 NLVLKRTGYLAVTLFLNE----------------DHDLIILIVNTIQKDLKSDNYLI--VCAALNAVCKLINEE-TIPAV 146 (969)
Q Consensus 86 ~~~~KRlgYLals~~~~~----------------~~dlllL~iNtLqKDL~s~N~~v--ralALr~Ls~I~~~e-l~~~l 146 (969)
+...|..+-+++..+... +++..-.+-+.+..-|.++++.+ .+.+|..++....++ --+.+
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~~~~~~w~~l 129 (462)
T 1ibr_B 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPEL 129 (462)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTH
T ss_pred ChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHhccccccHHH
Confidence 455666666666655432 22333344455555566655544 233344444332232 45678
Q ss_pred HHHHHHhcCCC--ChHHHHHHHHHHHHHHhhC-Ccch----hhHHHHHHHhhcCC--ChhHHHHHHHHHHHhhhh---Cc
Q 002083 147 LPQVVELLGHS--KEAVRRKAIMALHRFYQKS-PSSV----QHLVSNFRKRLCDN--DPGVMGATLCPLFDLITV---DV 214 (969)
Q Consensus 147 ~~~V~~lL~d~--~pyVRKkA~lal~kiy~~~-Pe~v----~~l~~~l~~lL~D~--D~~Vv~aAl~~L~ei~~~---~p 214 (969)
++.+..++.+. ++.+|..|+.++..+.... |+.+ ..+++.+...|.|. ++.|..+|+.++..++.. +.
T Consensus 130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (462)
T 1ibr_B 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (462)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999888 8999999999999999865 5433 45777788888887 788988888887765421 11
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHH----Hh-hhHHHHHHhHhccCCCCCC
Q 002083 215 NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQA----SE-NMYTVVGDIFRKCDSSSNI 289 (969)
Q Consensus 215 ~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~----se-~l~~iL~~iL~~~~~~~Ni 289 (969)
..+ .....++..|.+... -.++-.+..++++|..+....+.. .. .+.+++...++..
T Consensus 210 ~~~-~~~~~l~~~l~~~~~-----------~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~------ 271 (462)
T 1ibr_B 210 DKE-SERHFIMQVVCEATQ-----------CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD------ 271 (462)
T ss_dssp TSH-HHHHHHHHHHHHHTT-----------CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS------
T ss_pred hhh-HHHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------
Confidence 111 011223444443321 124555556677776554322111 11 3334333333321
Q ss_pred CchHHHHHHHHHHhcCCC----------------------HHH----HHHHHHHHHHHhcC-------CChhHHHHHHHH
Q 002083 290 GNAVLYECICCVSSIYAN----------------------PKL----IESAADVIARFLKS-------DSHNLKYMGIDA 336 (969)
Q Consensus 290 ~~AVlyEaik~I~~l~~~----------------------~~l----l~~ai~~L~~fL~s-------~d~NlrYvaL~~ 336 (969)
...|...++..+..+... ..+ +...+..+...+.. .+.++|..+...
T Consensus 272 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~ 351 (462)
T 1ibr_B 272 IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHH
Confidence 235666666544333110 111 23334445455532 346899999999
Q ss_pred HHHHHhhChhHHHH-hHHhhccccCCCchHHHHHHHHHhhcccCCC-------cHHHHHHHHHHHHhhcCChhhHHHHHH
Q 002083 337 LGRLIKTSPEIAEQ-HQLAVIDCLEDPDDTLKRKTFELLYKMTKSS-------NVEVIVDRMIDYMISINDNHYKTEIAS 408 (969)
Q Consensus 337 L~~I~~~~P~l~~~-h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~-------Nv~~IV~eLl~yl~~~~D~~~k~eli~ 408 (969)
|..++...++.+.+ -...+..++.|++..+|..++..|..++..- .+..++..|+..+.+ .+..+|..++.
T Consensus 352 L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~ 430 (462)
T 1ibr_B 352 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAW 430 (462)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHH
Confidence 99999877643333 3344556788999999999999999988632 235677777777765 45678888888
Q ss_pred HHHHHhhhcCC
Q 002083 409 RCVELAEQFAP 419 (969)
Q Consensus 409 ~I~~laekyap 419 (969)
+++.+++.+.+
T Consensus 431 ~l~~~~~~~~~ 441 (462)
T 1ibr_B 431 TVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHhccc
Confidence 88888877654
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.55 E-value=1.9e-06 Score=88.18 Aligned_cols=187 Identities=19% Similarity=0.151 Sum_probs=104.8
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHH
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVIS 223 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~ 223 (969)
+..++.+.+.|.|+++.||..|+.++.++-. + ..++.|.++|.|.|+.|...|+..|..+. ++. .++.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--~~~----~~~~ 85 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--E----RAVEPLIKALKDEDAWVRRAAADALGQIG--DER----AVEP 85 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSCHHHHHHHHHHHHHHC--CGG----GHHH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--c----cHHHHHHHHHcCCCHHHHHHHHHHHHhhC--CHH----HHHH
Confidence 3456677888999999999999999998753 2 34567778889999999988888776653 121 2333
Q ss_pred HHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHh
Q 002083 224 FVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSS 303 (969)
Q Consensus 224 lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~ 303 (969)
++..|. -++|+.+...++.|..++. ....+.|...+... ...|...++.++..
T Consensus 86 L~~~l~---------------~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~------~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 86 LIKALK---------------DEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDE------DWFVRIAAAFALGE 138 (211)
T ss_dssp HHHHTT---------------CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCS------SHHHHHHHHHHHHH
T ss_pred HHHHHc---------------CCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCC------CHHHHHHHHHHHHH
Confidence 333332 1366677777776666653 11223333334321 13455555555555
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCC
Q 002083 304 IYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKS 380 (969)
Q Consensus 304 l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~ 380 (969)
+... .++..|..++.+.++++|..++..|..+.. +..+ ..+..+++|+|..+|..|++.|..+.+.
T Consensus 139 ~~~~-----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~~----~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 139 IGDE-----RAVEPLIKALKDEDGWVRQSAADALGEIGG--ERVR----AAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HCCG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--HHHH----HHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred cCCH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--hhHH----HHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4321 123445555555555566555555555432 2221 2233344555555555555555555443
No 48
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.43 E-value=2e-05 Score=82.35 Aligned_cols=182 Identities=18% Similarity=0.252 Sum_probs=136.9
Q ss_pred CcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHH--H---HHHHHHhhhcCccHHHHHHHHHHHHcccc--cchH
Q 002083 71 ASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLII--L---IVNTIQKDLKSDNYLIVCAALNAVCKLIN--EETI 143 (969)
Q Consensus 71 vsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlll--L---~iNtLqKDL~s~N~~vralALr~Ls~I~~--~el~ 143 (969)
-.+.|...++++.+++...++-+--++..++..+.+..- + ++..|.+-|+++++.++..|+.+|+++.. ++..
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 356688999999999999999888888655543332211 1 45678888899999999999999999875 3322
Q ss_pred h-----hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhC
Q 002083 144 P-----AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVD 213 (969)
Q Consensus 144 ~-----~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~ 213 (969)
. ..++.+.++|.++++.||+.|+.++..+....+.... ..++.+.++|.+.|+.|...|+.+|..++..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 2 2678899999999999999999999999876654322 37888999999999999999999999988765
Q ss_pred chhhHH-----HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH
Q 002083 214 VNSYKD-----LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ 267 (969)
Q Consensus 214 p~~~~~-----Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~ 267 (969)
+..... .++.++++|.. +++..+...+..|..++..++.
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~---------------~~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSS---------------PNEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGC---------------SSHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHCCCHHHHHHHHCC---------------CCHHHHHHHHHHHHHHhcCCHH
Confidence 543222 33444544431 3788888999999888866554
No 49
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.42 E-value=1.6e-06 Score=90.81 Aligned_cols=191 Identities=11% Similarity=0.080 Sum_probs=144.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhCch-----hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHH
Q 002083 183 LVSNFRKRLCDNDPGVMGATLCPLFDLITVDVN-----SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKI 257 (969)
Q Consensus 183 l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~-----~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLkl 257 (969)
.+..+..+|.|+|+.|+.+|+.++-++++..++ .++.+.+.+++++++ .++-.-++-+|+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~---------------~dEkval~A~r~ 98 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ---------------ENEKVTIKALRA 98 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS---------------TTHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc---------------cchhHHHHHHHH
Confidence 456778899999999999999999999987543 455666666666543 478888999999
Q ss_pred HHHhCCC---ChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 002083 258 LALLGSG---DKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGI 334 (969)
Q Consensus 258 L~~l~~~---d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL 334 (969)
|..+-.+ ++....++.+.|.+++++ .| ..+..|++..+-.+.. -.......+.|.+++.|+++.+|-+||
T Consensus 99 L~~LLe~vpL~~~~y~Kl~~aL~dlik~----~~--~il~~eaae~Lgklkv-~~~~~~V~~~l~sLl~Skd~~vK~agl 171 (265)
T 3b2a_A 99 LGYLVKDVPMGSKTFLKAAKTLVSLLES----PD--DMMRIETIDVLSKLQP-LEDSKLVRTYINELVVSPDLYTKVAGF 171 (265)
T ss_dssp HHHHHTTCCBCHHHHHHHHHHHHHHTTS----CC--HHHHHHHHHHHHHCCB-SCCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHhcC----CC--chHHHHHHHHhCcCCc-ccchHHHHHHHHHHHhCCChhHHHHHH
Confidence 9887443 455556666667777663 22 3667888887766632 122345678899999999999999999
Q ss_pred HHHHHHHhhC--hhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHh
Q 002083 335 DALGRLIKTS--PEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMI 395 (969)
Q Consensus 335 ~~L~~I~~~~--P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~ 395 (969)
+.+..|+.+. |.++..-...|=+.|+..|++|+.+||++|..|.+..=.+.|+.++..-++
T Consensus 172 ~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~ 234 (265)
T 3b2a_A 172 CLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISR 234 (265)
T ss_dssp HHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHH
T ss_pred HHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHH
Confidence 9999999754 666666566677788999999999999999999988766666666665554
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.39 E-value=1.6e-05 Score=80.54 Aligned_cols=183 Identities=19% Similarity=0.175 Sum_probs=129.8
Q ss_pred chHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHH
Q 002083 73 FGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVE 152 (969)
Q Consensus 73 f~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~ 152 (969)
..+..+|+++.+++...|+...-++..+... + ++..|.+-|.++++.+|..|+.+|+.+..++. .+.+.+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~ 83 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--R----AVEPLIKALKDEDAWVRRAAADALGQIGDERA----VEPLIK 83 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG----HHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--h----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH----HHHHHH
Confidence 4577889999999999998888888776542 2 23455666778999999999999999987754 466678
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHH
Q 002083 153 LLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVA 232 (969)
Q Consensus 153 lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~ 232 (969)
+|.|+++.||..|+.++.++-. ++ .++.+.++|.|.|+.|..+|+.+|..+. ++ ..++.+..+|..
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~~--~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~----~~~~~L~~~l~d-- 149 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIGD--ER----AVEPLIKALKDEDWFVRIAAAFALGEIG--DE----RAVEPLIKALKD-- 149 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHT--CG----GGHHHHHHHTTC--
T ss_pred HHcCCCHHHHHHHHHHHHHhCc--HH----HHHHHHHHHcCCCHHHHHHHHHHHHHhC--CH----HHHHHHHHHHcC--
Confidence 8999999999999999998742 33 4566778889999999998888877653 22 233444444321
Q ss_pred hccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhc
Q 002083 233 ERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSI 304 (969)
Q Consensus 233 ~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l 304 (969)
++++.+...++.|..++. ....+.|..+++..+ ..|...++..+..+
T Consensus 150 -------------~~~~vr~~A~~aL~~~~~------~~~~~~L~~~l~d~~------~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 150 -------------EDGWVRQSAADALGEIGG------ERVRAAMEKLAETGT------GFARKVAVNYLETH 196 (201)
T ss_dssp -------------SSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCC------HHHHHHHHHHHHHC
T ss_pred -------------CCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCC------HHHHHHHHHHHHHH
Confidence 478899999999988853 234455555555321 34555665555443
No 51
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.38 E-value=1.5e-05 Score=81.06 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=134.1
Q ss_pred cCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHH-----HHHHHHhhhcCccHHHHHHHHHHHHcccc--
Q 002083 67 LGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIIL-----IVNTIQKDLKSDNYLIVCAALNAVCKLIN-- 139 (969)
Q Consensus 67 lG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL-----~iNtLqKDL~s~N~~vralALr~Ls~I~~-- 139 (969)
.|++....+.-.++++.+++...++-+..++..+...+++.... ++..|.+-|.++++.++..|+.+|+++..
T Consensus 6 ~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp -------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 45566677888899999999999999999999988666654322 45677888899999999999999999863
Q ss_pred cchHh-----hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002083 140 EETIP-----AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDL 209 (969)
Q Consensus 140 ~el~~-----~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei 209 (969)
++... ..++.+.++|.+.++.||+.|+.++..+...+++... ..++.+.++|.+.|+.|...|+.+|..+
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33222 2568899999999999999999999999987776543 3688899999999999999999999999
Q ss_pred hhhCchhhHHHH-HHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 210 ITVDVNSYKDLV-ISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 210 ~~~~p~~~~~Lv-~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
+..++.....++ ...+..|.+++.+ .++-.+...+..|..++
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSH-----------ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGC-----------SCHHHHHHHHHHHHHHC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhC-----------CCHHHHHHHHHHHHHHh
Confidence 876554322222 1233333333321 35667777777766654
No 52
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.25 E-value=5.1e-05 Score=77.01 Aligned_cols=178 Identities=16% Similarity=0.226 Sum_probs=117.3
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK 218 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~ 218 (969)
+...+.+.++|.+.++.||..|+.++..+...+++... ..++.+.++|.+.|+.|...|+.+|..++..++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34567888999999999999999999999877766543 3678899999999999999999999888765543211
Q ss_pred H-----HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchH
Q 002083 219 D-----LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAV 293 (969)
Q Consensus 219 ~-----Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AV 293 (969)
. .++.++++|.. +++- |
T Consensus 91 ~i~~~g~i~~L~~lL~~---------------~~~~-------------------------------------------v 112 (210)
T 4db6_A 91 AVIDAGALPALVQLLSS---------------PNEQ-------------------------------------------I 112 (210)
T ss_dssp HHHHTTCHHHHHHHTTC---------------SCHH-------------------------------------------H
T ss_pred HHHHCCCHHHHHHHHcC---------------CcHH-------------------------------------------H
Confidence 1 11222222210 1233 3
Q ss_pred HHHHHHHHHhcCC-CHHHH-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHH-----hHHhhccccCCC
Q 002083 294 LYECICCVSSIYA-NPKLI-----ESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQ-----HQLAVIDCLEDP 362 (969)
Q Consensus 294 lyEaik~I~~l~~-~~~ll-----~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~-----h~~~I~~cL~D~ 362 (969)
..+|+.++.++.. +++.. ..++..|..++.+.+++++..++.+|..|+..++..... -...++.++.++
T Consensus 113 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 192 (210)
T 4db6_A 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192 (210)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC
Confidence 4444444444432 11111 124566777777777888888888888887765543211 234567777888
Q ss_pred chHHHHHHHHHhhcccC
Q 002083 363 DDTLKRKTFELLYKMTK 379 (969)
Q Consensus 363 D~sIR~kaLdLL~~L~n 379 (969)
|..+|+.|+..|..++.
T Consensus 193 ~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 193 NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88999999888887764
No 53
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.21 E-value=0.0016 Score=81.58 Aligned_cols=169 Identities=14% Similarity=0.048 Sum_probs=99.6
Q ss_pred hcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc-------ccchHhhHHHHHHHhc
Q 002083 82 THDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI-------NEETIPAVLPQVVELL 154 (969)
Q Consensus 82 ~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~-------~~el~~~l~~~V~~lL 154 (969)
..+.+-..|+-+.-++..+ ..+++....+...+. .+.++.+|-.|+.+|-+.+ .++-...+-..|.+.+
T Consensus 34 ~~~~~~~~r~~A~~~L~~~-~~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l 109 (963)
T 2x19_B 34 YYDPNIENKNLAQKWLMQA-QVSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQI 109 (963)
T ss_dssp HHCCCHHHHHHHHHHHHHH-HHSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHH-hcCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHH
Confidence 4455666777777777664 345564444444443 2567788888887776543 2333344444555555
Q ss_pred CC---CChHHHHHHHHHHHHHHhhC-CcchhhHHHHHHHhhcC-----CChhHHHHHHHHHHHhhhh---C---------
Q 002083 155 GH---SKEAVRRKAIMALHRFYQKS-PSSVQHLVSNFRKRLCD-----NDPGVMGATLCPLFDLITV---D--------- 213 (969)
Q Consensus 155 ~d---~~pyVRKkA~lal~kiy~~~-Pe~v~~l~~~l~~lL~D-----~D~~Vv~aAl~~L~ei~~~---~--------- 213 (969)
.+ ..++||.+.+.++..|.+.+ |+.-+++++.+..++.. .++.....++.+|..++.+ .
T Consensus 110 ~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~ 189 (963)
T 2x19_B 110 TRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGL 189 (963)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-------
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHH
Confidence 43 36999999999999998863 55445566666666654 2444444555554433321 0
Q ss_pred -chhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCC
Q 002083 214 -VNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGS 263 (969)
Q Consensus 214 -p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~ 263 (969)
.+.....++.++.++.+++... ..+.|+...+|+.+..+..
T Consensus 190 ~~~~l~~~~~~i~~ll~~~l~~~---------~~~~~~~~~~l~~l~~wi~ 231 (963)
T 2x19_B 190 VRTSLAVECGAVFPLLEQLLQQP---------SSPSCVRQKVLKCFSSWVQ 231 (963)
T ss_dssp --CCSGGGHHHHHHHHHHHHSCT---------TCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---------CCchHHHHHHHHHHHHHHc
Confidence 0112344677778887776421 0134888889998866543
No 54
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.19 E-value=0.0042 Score=78.21 Aligned_cols=117 Identities=10% Similarity=0.097 Sum_probs=74.8
Q ss_pred HHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcc-------------cccchHhhHHHHHHHhcCCCCh
Q 002083 93 GYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL-------------INEETIPAVLPQVVELLGHSKE 159 (969)
Q Consensus 93 gYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I-------------~~~el~~~l~~~V~~lL~d~~p 159 (969)
+--.+..+ ..+++....+.+.+... +.+..+|-+|.-.+=+. ..++.-..+-..+..++.+..+
T Consensus 23 Ae~~L~~~-~~~p~~~~~L~~il~~~--~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~ 99 (960)
T 1wa5_C 23 SERNLRQL-ETQDGFGLTLLHVIAST--NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPN 99 (960)
T ss_dssp HHHHHHHH-HTSTTHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHh-hcCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCH
Confidence 44444333 34555554444444321 22445555555444432 2233334445556666666679
Q ss_pred HHHHHHHHHHHHHHhh-CCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002083 160 AVRRKAIMALHRFYQK-SPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 160 yVRKkA~lal~kiy~~-~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~ 212 (969)
.||++++.++.+|++. +|+.=+++++.+..++...|+..+.+++.+|.++++.
T Consensus 100 ~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~ 153 (960)
T 1wa5_C 100 NLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR 153 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 4655566788888888888888888899999988864
No 55
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.12 E-value=8.8e-05 Score=77.84 Aligned_cols=153 Identities=15% Similarity=0.206 Sum_probs=117.8
Q ss_pred HHHHhhcCCCcchhHHHHHHHHhhhccC-----chHHHHHHHHHHhhhc-CccHHHHHHHHHHHHccccc------chHh
Q 002083 77 HAVKMTHDDNLVLKRTGYLAVTLFLNED-----HDLIILIVNTIQKDLK-SDNYLIVCAALNAVCKLINE------ETIP 144 (969)
Q Consensus 77 ~vIkl~sS~~~~~KRlgYLals~~~~~~-----~dlllL~iNtLqKDL~-s~N~~vralALr~Ls~I~~~------el~~ 144 (969)
.+.+.+++++...|+.+...+..+.+.. .++ .=+++.|.+-|. ++|..+|..|+.+++.+... ..++
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3566788999999999999998887652 233 244677888884 89999999999999876532 3466
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhC-ch-hhHHHHH
Q 002083 145 AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVD-VN-SYKDLVI 222 (969)
Q Consensus 145 ~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~-p~-~~~~Lv~ 222 (969)
.+++.|.+.+.|+++.||..|..|+..++...+ ++.+++.+...|.++++.|...++..+..++... +. .+...++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~ 175 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK 175 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH
Confidence 789999999999999999999999999998654 6778899999999999999999998888765443 33 2334444
Q ss_pred HHHHHHHHHH
Q 002083 223 SFVSILKQVA 232 (969)
Q Consensus 223 ~lv~iLk~l~ 232 (969)
.++..|..++
T Consensus 176 ~l~p~l~~~l 185 (242)
T 2qk2_A 176 LLTTSLVKTL 185 (242)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 56
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.09 E-value=0.00089 Score=77.36 Aligned_cols=338 Identities=12% Similarity=0.108 Sum_probs=193.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch---h--hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHH--
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV---Q--HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKD-- 219 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v---~--~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~-- 219 (969)
++.+.++|.+.++.+|..|+.++.++...+++.- . ..++.|.++|.+.++.+...|+.+|..+...++..-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5677888989999999999999999887666532 1 36888999999999999999999999888765543222
Q ss_pred ---HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH---HHhhhHHHHHHhHhc-------cCCC
Q 002083 220 ---LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ---ASENMYTVVGDIFRK-------CDSS 286 (969)
Q Consensus 220 ---Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~---~se~l~~iL~~iL~~-------~~~~ 286 (969)
.+|.|+++|+. -.++=.|......|..++..+.. ..+...+.|..+|.. ....
T Consensus 84 ~~G~i~~Lv~lL~~--------------~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 84 RQNGIREAVSLLRR--------------TGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSN 149 (457)
T ss_dssp HTTCHHHHHHHHTT--------------CCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC-----
T ss_pred HcCCHHHHHHHHhh--------------CCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccc
Confidence 35677777742 12566777788888777665321 111344555566621 0000
Q ss_pred ---CCCCchHHHHHHHHHHhcCCCHHHHH------HHHHHHHHHhcC------CChhHHHHHHHHHHHHHhhC----h--
Q 002083 287 ---SNIGNAVLYECICCVSSIYANPKLIE------SAADVIARFLKS------DSHNLKYMGIDALGRLIKTS----P-- 345 (969)
Q Consensus 287 ---~Ni~~AVlyEaik~I~~l~~~~~ll~------~ai~~L~~fL~s------~d~NlrYvaL~~L~~I~~~~----P-- 345 (969)
......|+..|+.++.++..+++... .++..|..+|.+ .+..++--++..|..+.... +
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~ 229 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR 229 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred hhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcch
Confidence 00134677889999988876655433 356677777764 22333322333333332100 0
Q ss_pred ------------------hHHH-------------------------------HhHHhhccccCC-CchHHHHHHHHHhh
Q 002083 346 ------------------EIAE-------------------------------QHQLAVIDCLED-PDDTLKRKTFELLY 375 (969)
Q Consensus 346 ------------------~l~~-------------------------------~h~~~I~~cL~D-~D~sIR~kaLdLL~ 375 (969)
..|. .-...++.+|.+ .++.++..+.-.|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~ 309 (457)
T 1xm9_A 230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ 309 (457)
T ss_dssp HHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 0000 000112233332 35788888999999
Q ss_pred cccCCCc-----H-HH------HHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCch----HHHHHHHHHHHhhhCcc-
Q 002083 376 KMTKSSN-----V-EV------IVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSN----HWFIQTMNKVFEHAGDL- 438 (969)
Q Consensus 376 ~L~n~~N-----v-~~------IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~----~W~Id~L~~ll~~~gd~- 438 (969)
.+|..++ + +. ++.-|.+.+.. .+...+++++..+..++.. .... ...+..|++++......
T Consensus 310 nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~-~~~~v~~~A~~aL~nls~~-~~~~~~i~~~~i~~Lv~lL~~~~~~~ 387 (457)
T 1xm9_A 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS-GNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRLLTSHTGNT 387 (457)
T ss_dssp HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHHHTTTSCCSCS
T ss_pred HhccCcCcchHHHHHHHHHHcCCchHHHHHHhC-CCHhHHHHHHHHHHHHhcC-HHHHHHHHHhhhHHHHHhccCCCCCC
Confidence 9986432 1 22 34456666654 5778999999999988752 1111 23455566666543221
Q ss_pred -chHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCC
Q 002083 439 -VNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTA 501 (969)
Q Consensus 439 -v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~ 501 (969)
..++++..++..+..-...+......-...-++..+.+++... ..+...+.++|+|..|...
T Consensus 388 ~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSS
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcc
Confidence 2234443444433321110110000001123566777777655 2334567778999988754
No 57
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.03 E-value=0.00019 Score=75.24 Aligned_cols=183 Identities=15% Similarity=0.220 Sum_probs=117.0
Q ss_pred chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcc----hhhHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhCch
Q 002083 141 ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSS----VQHLVSNFRKRLC-DNDPGVMGATLCPLFDLITVDVN 215 (969)
Q Consensus 141 el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~----v~~l~~~l~~lL~-D~D~~Vv~aAl~~L~ei~~~~p~ 215 (969)
++...+-+.+.+.+.+++..+|+.|+.++.++...+|.. +..+++.+.++|. |.|+.|+.+|+.++..++..-..
T Consensus 11 di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred cccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 444455566888999999999999999999999886553 3467888899995 99999999998888777643222
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHH
Q 002083 216 SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLY 295 (969)
Q Consensus 216 ~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVly 295 (969)
.+.+.++.++.. ++..++..++...+.. .
T Consensus 91 ~~~~~~~~ilp~-----------------------------ll~~l~d~~~~vr~~a----------------------~ 119 (242)
T 2qk2_A 91 RFSNYASACVPS-----------------------------LLEKFKEKKPNVVTAL----------------------R 119 (242)
T ss_dssp GGHHHHHHHHHH-----------------------------HHHGGGCCCHHHHHHH----------------------H
T ss_pred hHHHHHHHHHHH-----------------------------HHHHHcCCCHHHHHHH----------------------H
Confidence 222222211111 1112221111111111 1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC-hh-----HHHHhHHhhccccCCCchHHHHH
Q 002083 296 ECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTS-PE-----IAEQHQLAVIDCLEDPDDTLKRK 369 (969)
Q Consensus 296 Eaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~-P~-----l~~~h~~~I~~cL~D~D~sIR~k 369 (969)
+|+..++...+ +..++..|...+.++++.+|--++..|..++..+ |+ .+......++.||+|++..+|..
T Consensus 120 ~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~ 195 (242)
T 2qk2_A 120 EAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDS 195 (242)
T ss_dssp HHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 22222222111 2345566777788888899999999999977654 43 23344456777889999999999
Q ss_pred HHHHhhccc
Q 002083 370 TFELLYKMT 378 (969)
Q Consensus 370 aLdLL~~L~ 378 (969)
|.+.+..++
T Consensus 196 A~~~l~~l~ 204 (242)
T 2qk2_A 196 SAEALGTLI 204 (242)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877655
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.02 E-value=0.0013 Score=76.00 Aligned_cols=288 Identities=15% Similarity=0.145 Sum_probs=187.4
Q ss_pred hHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHH-----HHHHHhhhc-CccHHHHHHHHHHHHcccccc-----h
Q 002083 74 GYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILI-----VNTIQKDLK-SDNYLIVCAALNAVCKLINEE-----T 142 (969)
Q Consensus 74 ~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~-----iNtLqKDL~-s~N~~vralALr~Ls~I~~~e-----l 142 (969)
+....|+++.+++...++-+--++..+...+++.-..+ +..|-+=|. ++++.++-.|..+|.+|...+ +
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i 124 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH
Confidence 46677889999998888888888888887656654444 446666677 778888888877777765422 3
Q ss_pred HhhHHHHHHHhcC--------C--------CChHHHHHHHHHHHHHHhhCCcchh------hHHHHHHHhhcC------C
Q 002083 143 IPAVLPQVVELLG--------H--------SKEAVRRKAIMALHRFYQKSPSSVQ------HLVSNFRKRLCD------N 194 (969)
Q Consensus 143 ~~~l~~~V~~lL~--------d--------~~pyVRKkA~lal~kiy~~~Pe~v~------~l~~~l~~lL~D------~ 194 (969)
++-.++.+.++|. + ..+.|++.|+-|+..+... |+... ..++.|..+|.+ .
T Consensus 125 ~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 203 (457)
T 1xm9_A 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRC 203 (457)
T ss_dssp HHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred HhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCC
Confidence 3356778888882 2 3567888999999998865 54321 345556666642 4
Q ss_pred ChhHHHHHHHHHHHhhhh----Cchhh---------------------------------------------------HH
Q 002083 195 DPGVMGATLCPLFDLITV----DVNSY---------------------------------------------------KD 219 (969)
Q Consensus 195 D~~Vv~aAl~~L~ei~~~----~p~~~---------------------------------------------------~~ 219 (969)
|..++..|+++|..+... .+..+ .+
T Consensus 204 ~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (457)
T 1xm9_A 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283 (457)
T ss_dssp TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHH
T ss_pred chHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcc
Confidence 555677777776655310 00000 11
Q ss_pred HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHH----------hhhHHHHHHhHhccCCCCCC
Q 002083 220 LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQAS----------ENMYTVVGDIFRKCDSSSNI 289 (969)
Q Consensus 220 Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~s----------e~l~~iL~~iL~~~~~~~Ni 289 (969)
.++.++.+|.. -.+|-.+......|..++..+.... ...++.|.++|++.
T Consensus 284 ~l~~L~~lL~~--------------~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~------ 343 (457)
T 1xm9_A 284 AIRTYLNLMGK--------------SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG------ 343 (457)
T ss_dssp HHHHHHHHHHH--------------CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS------
T ss_pred hHHHHHHHHhh--------------cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC------
Confidence 22333333332 1246666667777777876542211 12345666777643
Q ss_pred CchHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHhcCCCh------hHHHHHHHHHHHHHhhChhHHHH-----hHHh
Q 002083 290 GNAVLYECICCVSSIYANPKL----IESAADVIARFLKSDSH------NLKYMGIDALGRLIKTSPEIAEQ-----HQLA 354 (969)
Q Consensus 290 ~~AVlyEaik~I~~l~~~~~l----l~~ai~~L~~fL~s~d~------NlrYvaL~~L~~I~~~~P~l~~~-----h~~~ 354 (969)
..-|..+++.++.++..+++. ...++.+|..+|.+.++ ++...++..|..|+..+++.... -...
T Consensus 344 ~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~ 423 (457)
T 1xm9_A 344 NSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423 (457)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHH
T ss_pred CHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 246889999998887655432 23477788999987644 57788999999998877765332 1245
Q ss_pred hccccCCC-chHHHHHHHHHhhcccCCCc
Q 002083 355 VIDCLEDP-DDTLKRKTFELLYKMTKSSN 382 (969)
Q Consensus 355 I~~cL~D~-D~sIR~kaLdLL~~L~n~~N 382 (969)
+..++.+. +..|+++|..+|..|...+.
T Consensus 424 L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 424 IINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 66777777 78999999999998887653
No 59
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.0001 Score=78.67 Aligned_cols=153 Identities=11% Similarity=0.086 Sum_probs=117.3
Q ss_pred HhhcCCCcchhHHHHHHHHh-hhccCchHH------HHHHHHHHhhh-cCccHHHHHHHHHHHHcccc----cc----hH
Q 002083 80 KMTHDDNLVLKRTGYLAVTL-FLNEDHDLI------ILIVNTIQKDL-KSDNYLIVCAALNAVCKLIN----EE----TI 143 (969)
Q Consensus 80 kl~sS~~~~~KRlgYLals~-~~~~~~dll------lL~iNtLqKDL-~s~N~~vralALr~Ls~I~~----~e----l~ 143 (969)
..++|++-.+|+-++..+.. +++..+++. .-++..|++-+ ++.|..+|..|+++++.+.. +. .+
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 34589999999999999999 875433221 23478889999 79999999999999987543 23 34
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-Cc----chhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc---h
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKS-PS----SVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV---N 215 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~-Pe----~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p---~ 215 (969)
..++|.|...+.|+++.||..|..|+-.++... |. .++.+++.+...|...++.|...++..|..++...+ .
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence 567889999999999999999999999999865 32 255788899999998999999999988888876654 3
Q ss_pred hhHHHH-HHHHHHHHHHH
Q 002083 216 SYKDLV-ISFVSILKQVA 232 (969)
Q Consensus 216 ~~~~Lv-~~lv~iLk~l~ 232 (969)
.+...+ +.++..|.+++
T Consensus 183 ~l~~~l~~~iip~l~~~l 200 (249)
T 2qk1_A 183 TLQRYLKDEVVPIVIQIV 200 (249)
T ss_dssp HHHHHHTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344444 55555555543
No 60
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.94 E-value=0.0082 Score=71.69 Aligned_cols=340 Identities=14% Similarity=0.115 Sum_probs=190.7
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-Cchhh-
Q 002083 145 AVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITV-DVNSY- 217 (969)
Q Consensus 145 ~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~-~p~~~- 217 (969)
.-++.++++|.+.++-++..|+.++.++...+++.-. ..++.|.++|...++.|...|+.+|..++.. +...-
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3467888899999999999999999988876655322 3678899999999999999999999988863 33321
Q ss_pred ----HHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHH---HhhhHHHHHHhHh--c-c--C-
Q 002083 218 ----KDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQA---SENMYTVVGDIFR--K-C--D- 284 (969)
Q Consensus 218 ----~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~---se~l~~iL~~iL~--~-~--~- 284 (969)
..-+|.|+++|+.- .++-.|-.....|..+...+... .+.-...|.+++. . . +
T Consensus 128 ~I~~~GaIp~LV~LL~s~--------------~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKA--------------RDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HHHHTTHHHHHHHHHHHC--------------CSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC--
T ss_pred HHHHcCCHHHHHHHHcCC--------------CCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccc
Confidence 12357788887641 24556777777777776643211 1112344444331 0 0 0
Q ss_pred ------CCCCCCchHHHHHHHHHHhcCCC-HHHHHH------HHHHHHHHhcC------CChhHHHHHHHHHHHHHhhC-
Q 002083 285 ------SSSNIGNAVLYECICCVSSIYAN-PKLIES------AADVIARFLKS------DSHNLKYMGIDALGRLIKTS- 344 (969)
Q Consensus 285 ------~~~Ni~~AVlyEaik~I~~l~~~-~~ll~~------ai~~L~~fL~s------~d~NlrYvaL~~L~~I~~~~- 344 (969)
........|+..|+.++.++..+ ++.... +++.|..+|.+ .+..++--++..|..|....
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence 00111236888899999888653 232222 34567777753 23345555666665554321
Q ss_pred ---hh---HHH-----------------------HhHHhhccccC-CCchHHHHHHHHHhhcccCCC-----cHH-----
Q 002083 345 ---PE---IAE-----------------------QHQLAVIDCLE-DPDDTLKRKTFELLYKMTKSS-----NVE----- 384 (969)
Q Consensus 345 ---P~---l~~-----------------------~h~~~I~~cL~-D~D~sIR~kaLdLL~~L~n~~-----Nv~----- 384 (969)
|. +.. .-...++.+|. ..+..++..|...|..+|..+ .++
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 10 000 00011233443 345789999999999997543 122
Q ss_pred -HHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCch----HHHHHHHHHHHhhhCc----cchHHHHHHHHHHHhccc
Q 002083 385 -VIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSN----HWFIQTMNKVFEHAGD----LVNIKVAHNLMRLIAEGF 455 (969)
Q Consensus 385 -~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~----~W~Id~L~~ll~~~gd----~v~~ev~~~li~lI~~~~ 455 (969)
..+.-|.+.+.. .+...++.++.++..|+.- .... ...+.-|++++..+.. .+.++++...+..+.+-.
T Consensus 354 ~~glp~Lv~LL~s-~~~~v~~~A~~aL~nLs~~-~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~ 431 (584)
T 3l6x_A 354 EKALSAIADLLTN-EHERVVKAASGALRNLAVD-ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431 (584)
T ss_dssp HHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhCC-hhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh
Confidence 335566666654 5778899999999988853 2221 1223334444433211 123444444444333210
Q ss_pred CCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccC
Q 002083 456 GEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGT 500 (969)
Q Consensus 456 g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~ 500 (969)
..+..+...-...-++..+..++......+...+.++|+|.....
T Consensus 432 a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 432 AENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 001111111112235667777776543334456677787776654
No 61
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00019 Score=76.49 Aligned_cols=181 Identities=10% Similarity=0.090 Sum_probs=117.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH-HHhhCCcch------hhHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhCc-hhhH
Q 002083 148 PQVVELLGHSKEAVRRKAIMALHR-FYQKSPSSV------QHLVSNFRKRL-CDNDPGVMGATLCPLFDLITVDV-NSYK 218 (969)
Q Consensus 148 ~~V~~lL~d~~pyVRKkA~lal~k-iy~~~Pe~v------~~l~~~l~~lL-~D~D~~Vv~aAl~~L~ei~~~~p-~~~~ 218 (969)
+...+.+.+++..-||.|+.++.. +..-+|+.. ..+++.+.+.| .|.|+.|+..|+.++-.++..-. ..|
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f- 97 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF- 97 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS-
T ss_pred hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc-
Confidence 355677899999999999999999 987666654 35778888889 89999999888888776653211 111
Q ss_pred HHHHHHHHHHHHHHhccCCCCcCCCCCCC-hhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHH
Q 002083 219 DLVISFVSILKQVAERRLPKSYDYHQMPA-PFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYEC 297 (969)
Q Consensus 219 ~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~-PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEa 297 (969)
. +|...-+-.+|..++...+...+.....|..++..
T Consensus 98 ----------------------------~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--------------- 134 (249)
T 2qk1_A 98 ----------------------------SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--------------- 134 (249)
T ss_dssp ----------------------------CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH---------------
T ss_pred ----------------------------cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---------------
Confidence 2 33333333344444433222222222222222221
Q ss_pred HHHHHhcCCCHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh---hHHHHhH-----HhhccccCCCchHHH
Q 002083 298 ICCVSSIYANPK--LIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP---EIAEQHQ-----LAVIDCLEDPDDTLK 367 (969)
Q Consensus 298 ik~I~~l~~~~~--ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P---~l~~~h~-----~~I~~cL~D~D~sIR 367 (969)
+.+... .++.+.+.|...|.++++.+|.-++..|..++...+ ..+..|. ..+..|++|.+..+|
T Consensus 135 ------~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR 208 (249)
T 2qk1_A 135 ------YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIR 208 (249)
T ss_dssp ------SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHH
T ss_pred ------ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 211111 133456677788888889999999999999998776 4444444 356678899999999
Q ss_pred HHHHHHhhccc
Q 002083 368 RKTFELLYKMT 378 (969)
Q Consensus 368 ~kaLdLL~~L~ 378 (969)
..|.+.|..++
T Consensus 209 ~aA~~~l~~i~ 219 (249)
T 2qk1_A 209 TIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888776643
No 62
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.87 E-value=0.013 Score=69.92 Aligned_cols=159 Identities=12% Similarity=0.038 Sum_probs=111.7
Q ss_pred cchHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHH-----HHHHHHhhhcCccHHHHHHHHHHHHcccc---cchH
Q 002083 72 SFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIIL-----IVNTIQKDLKSDNYLIVCAALNAVCKLIN---EETI 143 (969)
Q Consensus 72 sf~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL-----~iNtLqKDL~s~N~~vralALr~Ls~I~~---~el~ 143 (969)
+.....+|+++.+.+...+.-+-.++..+...+.+.-.. .|..|.+-|.++++.++..|..+|.+|.. ++--
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 345677899999999888887777787777655543222 45778888999999999999999988875 3332
Q ss_pred h-----hHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhCCcc----hhhHHHHHHHhh------------------cCCC
Q 002083 144 P-----AVLPQVVELLGH-SKEAVRRKAIMALHRFYQKSPSS----VQHLVSNFRKRL------------------CDND 195 (969)
Q Consensus 144 ~-----~l~~~V~~lL~d-~~pyVRKkA~lal~kiy~~~Pe~----v~~l~~~l~~lL------------------~D~D 195 (969)
. -.++.+.++|.+ .++.+++.|+.||..+-. +++. +...++.|.++| ...|
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence 2 246778888886 678899999999998876 4442 223345555544 1236
Q ss_pred hhHHHHHHHHHHHhhhhCchh------hHHHHHHHHHHHHHH
Q 002083 196 PGVMGATLCPLFDLITVDVNS------YKDLVISFVSILKQV 231 (969)
Q Consensus 196 ~~Vv~aAl~~L~ei~~~~p~~------~~~Lv~~lv~iLk~l 231 (969)
+.|..+|..+|..+...+++. ...+++.++.+|+..
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 789999999999887665432 123456778887754
No 63
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.86 E-value=0.0015 Score=73.30 Aligned_cols=243 Identities=16% Similarity=0.105 Sum_probs=139.5
Q ss_pred cCccHHHHHHHHHHHHcccccchHh------hHHHHHHHhcC-----------CCChHHHHHHHHHHHHHHhhCCc---c
Q 002083 120 KSDNYLIVCAALNAVCKLINEETIP------AVLPQVVELLG-----------HSKEAVRRKAIMALHRFYQKSPS---S 179 (969)
Q Consensus 120 ~s~N~~vralALr~Ls~I~~~el~~------~l~~~V~~lL~-----------d~~pyVRKkA~lal~kiy~~~Pe---~ 179 (969)
-.++....+.|+.+|.+|...+-.+ -.++.+.++|. +.++-+|+.|+.+|..+...+++ .
T Consensus 42 ~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 42 PAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455577778888888876443322 23445566662 23578999999999999876542 2
Q ss_pred h---hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-CchhhH------HHHHHHHHHHHHHHhccCCCCcCCCCCCChh
Q 002083 180 V---QHLVSNFRKRLCDNDPGVMGATLCPLFDLITV-DVNSYK------DLVISFVSILKQVAERRLPKSYDYHQMPAPF 249 (969)
Q Consensus 180 v---~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~-~p~~~~------~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PW 249 (969)
+ ...++.|.++|...|+.|...|..+|..+... +.. .+ ..+|.++++|..- .++=
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i~~~G~Ip~Lv~lL~~~--------------~~~~ 186 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLREVGSVKALMECALEV--------------KKES 186 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHHHHTTHHHHHHHHHHHC--------------CCHH
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHHHHCCCHHHHHHHHhcC--------------CCHH
Confidence 3 23589999999999999999999998888753 332 22 2456777765431 2455
Q ss_pred HHHHHHHHHHHhCCCChHHHh------hhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC----CCHHHHHH-----H
Q 002083 250 IQIRLLKILALLGSGDKQASE------NMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY----ANPKLIES-----A 314 (969)
Q Consensus 250 lQikLLklL~~l~~~d~~~se------~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~----~~~~ll~~-----a 314 (969)
.+...+..|..+...++.... -..+.|..+|+......+ ..|+.+|+.++.++. .+++..+. +
T Consensus 187 ~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~--~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~ 264 (354)
T 3nmw_A 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT--LAIIESGGGILRNVSSLIATNEDHRQILRENNC 264 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc--HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCC
Confidence 666677788777663322211 234555566653221101 135666666655543 23333221 3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHH---HHh--HHhhccccCCCchHHHHHHHHHhhcccC
Q 002083 315 ADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIA---EQH--QLAVIDCLEDPDDTLKRKTFELLYKMTK 379 (969)
Q Consensus 315 i~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~---~~h--~~~I~~cL~D~D~sIR~kaLdLL~~L~n 379 (969)
+..|..+|.+.+..++--+..+|..|+..+++.. .++ ...++.+|++.+..+|+.|...|..|+.
T Consensus 265 i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 4556666665556666666666666654433221 111 2334445555555555555555554443
No 64
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.84 E-value=0.0044 Score=77.83 Aligned_cols=437 Identities=9% Similarity=0.085 Sum_probs=196.3
Q ss_pred hcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc-------ccchHhhHHHHHHHhc
Q 002083 82 THDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI-------NEETIPAVLPQVVELL 154 (969)
Q Consensus 82 ~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~-------~~el~~~l~~~V~~lL 154 (969)
+.+++-..|+-+.-++..+ ..+|+....+...+.+ +.++.+|-.|+.+|-+.+ .++-...+-..|.+.+
T Consensus 16 ~~~~d~~~r~~A~~~L~~~-~~~p~~w~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l 91 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDA-EASPQAWQFSWQLMQL---GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESI 91 (971)
T ss_dssp HHTSTTTC----CHHHHHT-TTSTHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHH
Confidence 3345555666666666664 4456644444444433 467788888877776543 2333344444555554
Q ss_pred CC---CChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCC------ChhHHHHHHHHHHHhhh----hCc-------
Q 002083 155 GH---SKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDN------DPGVMGATLCPLFDLIT----VDV------- 214 (969)
Q Consensus 155 ~d---~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~------D~~Vv~aAl~~L~ei~~----~~p------- 214 (969)
.+ ..++||.+.+.++..|.+.+-..-+++++.+..++... ++.+.-.++.+|..++. .+.
T Consensus 92 ~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~ 171 (971)
T 2x1g_F 92 VRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVL 171 (971)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHH
Confidence 33 25899999999999998874212233444455545432 34444455555443332 111
Q ss_pred -hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChh-HHHHHHHHHHHhCC--CCh-HHHhhhHHHHHHhH-----hc--
Q 002083 215 -NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPF-IQIRLLKILALLGS--GDK-QASENMYTVVGDIF-----RK-- 282 (969)
Q Consensus 215 -~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PW-lQikLLklL~~l~~--~d~-~~se~l~~iL~~iL-----~~-- 282 (969)
+.....++.++.++.+++...-....+ .+-| +....|+.+..|.. +-+ .....+.+.+.. | ..
T Consensus 172 ~~~l~~~~~~vl~ll~~~l~~~~~~~~~----~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~ 246 (971)
T 2x1g_F 172 RAEIAKRVQLVIHTVERYLKLQMNRVWD----AEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCI 246 (971)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHTTSCCC----HHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCC----ccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccc
Confidence 112233466666676665421000000 0012 46667777765432 111 122333343333 2 00
Q ss_pred -cCCCCCC--CchHHHHHHHHHHhcCC--C----HHHHHHHHHHHHH----H---hcCCCh---hHHHHHHHHHHHHHhh
Q 002083 283 -CDSSSNI--GNAVLYECICCVSSIYA--N----PKLIESAADVIAR----F---LKSDSH---NLKYMGIDALGRLIKT 343 (969)
Q Consensus 283 -~~~~~Ni--~~AVlyEaik~I~~l~~--~----~~ll~~ai~~L~~----f---L~s~d~---NlrYvaL~~L~~I~~~ 343 (969)
.+.+.|. ...+.-.|+.|+..+.. . ..++...+..+.. + +...|. +..+...+.+..++..
T Consensus 247 ~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~ 326 (971)
T 2x1g_F 247 HAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER 326 (971)
T ss_dssp C---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred cccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 0000000 12233344455444321 1 1233333322222 2 233453 6677777888888877
Q ss_pred ChhHHH-----------Hh----HHhhccccCC-----CchHHHHHHHHHhhcccCC----------C--------cHHH
Q 002083 344 SPEIAE-----------QH----QLAVIDCLED-----PDDTLKRKTFELLYKMTKS----------S--------NVEV 385 (969)
Q Consensus 344 ~P~l~~-----------~h----~~~I~~cL~D-----~D~sIR~kaLdLL~~L~n~----------~--------Nv~~ 385 (969)
++.++. +| ...++.|... .|..+...+++.++.++.. . -+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (971)
T 2x1g_F 327 HSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAH 406 (971)
T ss_dssp THHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 666554 22 2234444422 3567888999887776541 1 1122
Q ss_pred HHHHHHHHHhhcCC--------------hhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHH----hhh----CccchHHH
Q 002083 386 IVDRMIDYMISIND--------------NHYKTEIASRCVELAEQFAPSNHWFIQTMNKVF----EHA----GDLVNIKV 443 (969)
Q Consensus 386 IV~eLl~yl~~~~D--------------~~~k~eli~~I~~laekyap~~~W~Id~L~~ll----~~~----gd~v~~ev 443 (969)
+++.++..+.--.| ..+|+.+...+..++..+. .-++..+...+ ... .+.-.-+.
T Consensus 407 ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~ea 483 (971)
T 2x1g_F 407 LTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEA 483 (971)
T ss_dssp HHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 23333333311011 1355655555556665543 23344333332 210 12111222
Q ss_pred HHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCCCCchhHHHHHHHHhccccCCCCC--CChHHHHHHHHHHHhhc
Q 002083 444 AHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGK--VSASYITGKLCDVAEAY 521 (969)
Q Consensus 444 ~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~~--~~~~~Il~~L~~~~~~~ 521 (969)
+-..+..|+++...+. .+.+ ...+..+.. +.....+..++..++|++|.|++.... .-.+.+++.++..++
T Consensus 484 al~~l~~iae~~~~~~---~~~l-~~l~~~l~~-l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~-- 556 (971)
T 2x1g_F 484 CIYSFQSVAEHFGGEE---KRQI-PRLMRVLAE-IPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN-- 556 (971)
T ss_dssp HHHHHHHTTTC---------CHH-HHHHHHHHH-SCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhcChhh---hHHH-HHHHHHHHh-cCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC--
Confidence 2223444555432211 1111 223332222 221111334577889999999874221 112334454444331
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 002083 522 SNDETIKAYAITALMKIYA 540 (969)
Q Consensus 522 ~e~~~Vk~~ILtAl~KL~~ 540 (969)
..|+...-.|+.++.-
T Consensus 557 ---~~v~~~A~~al~~l~~ 572 (971)
T 2x1g_F 557 ---SSMSAQATLGLKELCR 572 (971)
T ss_dssp ---SSCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHH
Confidence 4567777777777763
No 65
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.81 E-value=0.037 Score=70.37 Aligned_cols=173 Identities=16% Similarity=0.083 Sum_probs=98.4
Q ss_pred HHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc-------ccchHhhHHHH
Q 002083 77 HAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI-------NEETIPAVLPQ 149 (969)
Q Consensus 77 ~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~-------~~el~~~l~~~ 149 (969)
++++.+.+++-..|+-+.-++..+ ..+++....+...+.+ +.++.+|-.|+..|-+.+ .++--..+-..
T Consensus 20 ~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ 95 (1049)
T 3m1i_C 20 QVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNF 95 (1049)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHH
Confidence 344444444445677777777665 3445654444445544 457788888877776543 23333444445
Q ss_pred HHHhcCCC---------ChHHHHHHHHHHHHHHhh-CCcchhhHHHHHHHhhcCCChhHHHH---HHHHHHHhhhhC-c-
Q 002083 150 VVELLGHS---------KEAVRRKAIMALHRFYQK-SPSSVQHLVSNFRKRLCDNDPGVMGA---TLCPLFDLITVD-V- 214 (969)
Q Consensus 150 V~~lL~d~---------~pyVRKkA~lal~kiy~~-~Pe~v~~l~~~l~~lL~D~D~~Vv~a---Al~~L~ei~~~~-p- 214 (969)
+..++.+. .++||.+.+.++..+.+. .|+.=+++++.+..++. .++...-. ++..++|.+.+. .
T Consensus 96 ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~ 174 (1049)
T 3m1i_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAE 174 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcch
Confidence 55555432 479999999999999987 46555556666666665 44433333 334444433211 1
Q ss_pred -----------hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC
Q 002083 215 -----------NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG 264 (969)
Q Consensus 215 -----------~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~ 264 (969)
..++..++.++.++.+++... .++=+...+|+.+..+...
T Consensus 175 ~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~----------~~~~~~~~aL~~l~~~l~w 225 (1049)
T 3m1i_C 175 QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG----------SSSSLIVATLESLLRYLHW 225 (1049)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHTTT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHhh
Confidence 123333455666666655421 2344667778888766543
No 66
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.78 E-value=1.8e-05 Score=75.44 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhc
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELL 154 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL 154 (969)
...+++++.+++...|+.+..++..+.+. . +..|.+-|+|+++.+|..|+++|+++..++ ..+.+.++|
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~----a~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDE--A-----FEPLLESLSNEDWRIRGAAAWIIGNFQDER----AVEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSST--T-----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHH----HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHH
Confidence 34456778888888777766666555332 1 367778889999999999999999998765 456677788
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHH
Q 002083 155 GHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLF 207 (969)
Q Consensus 155 ~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ 207 (969)
.|+++.||..|+.++.++- + +..++.|.++|.|.|+.|..+|+.+|.
T Consensus 83 ~d~~~~VR~~A~~aL~~~~--~----~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG--G----ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC--S----HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHHHhC--c----HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8999999999999999875 2 235677888889999999988876653
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.77 E-value=0.0044 Score=71.97 Aligned_cols=238 Identities=16% Similarity=0.127 Sum_probs=142.5
Q ss_pred HHHHHHHHHHcccccchHh------hHHHHHHHhcC-----------CCChHHHHHHHHHHHHHHhhCCc---ch---hh
Q 002083 126 IVCAALNAVCKLINEETIP------AVLPQVVELLG-----------HSKEAVRRKAIMALHRFYQKSPS---SV---QH 182 (969)
Q Consensus 126 vralALr~Ls~I~~~el~~------~l~~~V~~lL~-----------d~~pyVRKkA~lal~kiy~~~Pe---~v---~~ 182 (969)
..|.|+.+|.+|...+-.+ -.++.+.++|. +.++-+++.|+.+|..+...+++ .+ ..
T Consensus 164 ~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 164 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp TTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 3568999998886544333 23455666663 24577999999999999976653 23 23
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhh-CchhhHH------HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHH
Q 002083 183 LVSNFRKRLCDNDPGVMGATLCPLFDLITV-DVNSYKD------LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLL 255 (969)
Q Consensus 183 l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~-~p~~~~~------Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLL 255 (969)
.++.|..+|...|+.|...|..+|..+... +.. .+. .+|.++++|.. ..++-.+...+
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~I~~~GaI~~LV~lLl~--------------s~~~~v~~~A~ 308 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLREVGSVKALMECALE--------------VKKESTLKSVL 308 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH-HHHHHHHTTHHHHHHHHHTT--------------CCSHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH-HHHHHHHcCCHHHHHHHHhc--------------CCCHHHHHHHH
Confidence 588999999999999999999999888653 322 222 34556665421 12456677777
Q ss_pred HHHHHhCCCChHHHh------hhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC----CCHHHHHH-----HHHHHHH
Q 002083 256 KILALLGSGDKQASE------NMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY----ANPKLIES-----AADVIAR 320 (969)
Q Consensus 256 klL~~l~~~d~~~se------~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~----~~~~ll~~-----ai~~L~~ 320 (969)
..|..+....++... -..+.|..+|+....... ..|..+|+.++.++. .+++..+. ++..|..
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~--~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT--LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST--THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch--HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 777777652221111 234556666654321100 136666666665554 24433222 3456667
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhChhHHH---Hh--HHhhccccCCCchHHHHHHHHHhhcccCC
Q 002083 321 FLKSDSHNLKYMGIDALGRLIKTSPEIAE---QH--QLAVIDCLEDPDDTLKRKTFELLYKMTKS 380 (969)
Q Consensus 321 fL~s~d~NlrYvaL~~L~~I~~~~P~l~~---~h--~~~I~~cL~D~D~sIR~kaLdLL~~L~n~ 380 (969)
+|.+.+..++--+..+|..|+..+++... ++ ...++.+|...+..+|+.|...|..|+..
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 77666667777777777777654443221 11 23455566666666666666666666543
No 68
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.72 E-value=0.23 Score=62.25 Aligned_cols=293 Identities=8% Similarity=0.066 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHccc-----ccchHhhHHHHHHHhc----------------CCCChHHHHHHHHHHHHHHhhCC-----c
Q 002083 125 LIVCAALNAVCKLI-----NEETIPAVLPQVVELL----------------GHSKEAVRRKAIMALHRFYQKSP-----S 178 (969)
Q Consensus 125 ~vralALr~Ls~I~-----~~el~~~l~~~V~~lL----------------~d~~pyVRKkA~lal~kiy~~~P-----e 178 (969)
.++..||+++.... .......+++.+.. | .+.++-+|..|+.|+..++...+ .
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~ 282 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPK 282 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHH
T ss_pred hHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHH
Confidence 57888999997522 11234456665665 4 12578899999999999998633 2
Q ss_pred chhhHHHHHHH-------hhcCCCh---hHHHHHHHHHHHhhhhCchhhH-----------HHHHHHHHHHHHHHhccCC
Q 002083 179 SVQHLVSNFRK-------RLCDNDP---GVMGATLCPLFDLITVDVNSYK-----------DLVISFVSILKQVAERRLP 237 (969)
Q Consensus 179 ~v~~l~~~l~~-------lL~D~D~---~Vv~aAl~~L~ei~~~~p~~~~-----------~Lv~~lv~iLk~l~~~~lp 237 (969)
.+..+++.+.. .+.+.|. .+......++..+....+..+. ..+..++..|-++..+ |
T Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~ 360 (971)
T 2x1g_F 283 TAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDK--P 360 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC--S
T ss_pred HHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcC--C
Confidence 23333333322 2345553 4444433344444433333222 2233444444443322 1
Q ss_pred CCcCCCCCCChhHHHHHHHHHHHhCC---------CChHH----HhhhHHHHHHhHhccCCCCCC----Cc---------
Q 002083 238 KSYDYHQMPAPFIQIRLLKILALLGS---------GDKQA----SENMYTVVGDIFRKCDSSSNI----GN--------- 291 (969)
Q Consensus 238 ~~y~y~~v~~PWlQikLLklL~~l~~---------~d~~~----se~l~~iL~~iL~~~~~~~Ni----~~--------- 291 (969)
..| ..+++.-...+.++..+.. .++.. ...+..++..++++....... ..
T Consensus 361 ~~~----~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~ 436 (971)
T 2x1g_F 361 GIY----PVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC 436 (971)
T ss_dssp SCT----TTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred CCC----CcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence 110 0245555566665544321 11111 122223444444443211110 00
Q ss_pred --hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----CChhHHHHHHHHHHHHHhhChhHHHHhHHh---hccccC-
Q 002083 292 --AVLYECICCVSSIYANPKLIESAADVIARFLKS-----DSHNLKYMGIDALGRLIKTSPEIAEQHQLA---VIDCLE- 360 (969)
Q Consensus 292 --AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s-----~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~---I~~cL~- 360 (969)
.-..++++.+..+.+ ..++......+...+.+ .+-.-+-.+|.+|..|+..-+.-...+... ++..+.
T Consensus 437 ~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~ 515 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc
Confidence 112444554554444 34555555555555543 345677788888888876433222222222 333333
Q ss_pred -CCchHHHHHHHHHhhcccC-----CCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 002083 361 -DPDDTLKRKTFELLYKMTK-----SSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMN 429 (969)
Q Consensus 361 -D~D~sIR~kaLdLL~~L~n-----~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~ 429 (969)
|+++.+|..++.+|..+++ .+....+++.|+..+ + ..++..++.++..+|+.......-|++.++
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll 586 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLL 586 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 5678999999999998753 567888888888877 3 467888888888888765433344444433
No 69
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.023 Score=69.53 Aligned_cols=278 Identities=13% Similarity=0.147 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHcccc-----cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh------hHHHHHHHhhc
Q 002083 124 YLIVCAALNAVCKLIN-----EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ------HLVSNFRKRLC 192 (969)
Q Consensus 124 ~~vralALr~Ls~I~~-----~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~------~l~~~l~~lL~ 192 (969)
..+|.+|+-.||++.. ..-+..+...+.+.|.+...-.|+-|+-+|.-+ ..+|+.-+ .+++.|.+++.
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~~~VKe~L~~d~~~L~~Lv~llk 386 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYL-SLKASVKIMIRSNESFTEILLTMIK 386 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH-TTSSHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCHHHHHHHHhCHHHHHHHHHHHh
Confidence 4678888888887662 233556777788888776544588888887755 34555322 35677777777
Q ss_pred C-CChhHHHHHHHHHHHhhhhCch------h---hHHHH----H-------------H-------------HHHHHHHHH
Q 002083 193 D-NDPGVMGATLCPLFDLITVDVN------S---YKDLV----I-------------S-------------FVSILKQVA 232 (969)
Q Consensus 193 D-~D~~Vv~aAl~~L~ei~~~~p~------~---~~~Lv----~-------------~-------------lv~iLk~l~ 232 (969)
+ .|..+...++.+|..+....+. . .+.+. | . .+..|..+.
T Consensus 387 ~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll 466 (778)
T 3opb_A 387 SQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM 466 (778)
T ss_dssp TTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG
T ss_pred CCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4 6777888888888777653221 0 00000 0 0 111111111
Q ss_pred hccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhh-----HHHHHHhHhccCCCCCCCchHHHHHHHHHHhc--C
Q 002083 233 ERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENM-----YTVVGDIFRKCDSSSNIGNAVLYECICCVSSI--Y 305 (969)
Q Consensus 233 ~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l-----~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l--~ 305 (969)
...+|=.|..+.++|..++.. +.....+ .+.|-.++...... +..+-..|+.++.++ .
T Consensus 467 -----------~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~---~~~~k~~AA~ALArLlis 531 (778)
T 3opb_A 467 -----------HNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDI---GEPIRILGCRALTRMLIF 531 (778)
T ss_dssp -----------GGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC------CCHHHHHHHHHHHHHHHT
T ss_pred -----------cCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCc---chHHHHHHHHHHHHHHhc
Confidence 113566777788888887643 3322222 34555555533111 113556777777654 4
Q ss_pred CCHHHH------HHHHHHHHHHhcC-CC------------hhH-HHHHHHHHHHHHhhC-------hh-HHH--HhHHhh
Q 002083 306 ANPKLI------ESAADVIARFLKS-DS------------HNL-KYMGIDALGRLIKTS-------PE-IAE--QHQLAV 355 (969)
Q Consensus 306 ~~~~ll------~~ai~~L~~fL~s-~d------------~Nl-rYvaL~~L~~I~~~~-------P~-l~~--~h~~~I 355 (969)
.+|.+. ..++.+|..+|.. .+ +++ +|-+|.+|..|+... .. ++. .....+
T Consensus 532 ~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 532 TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 555543 1578899999972 11 112 999999999999865 12 343 246788
Q ss_pred ccccCCCchHHHHHHHHHhhcccCCC-cH-HHH-----------HHHHHHHHhhcCChhhHHHHHHHHHHHhhhcC
Q 002083 356 IDCLEDPDDTLKRKTFELLYKMTKSS-NV-EVI-----------VDRMIDYMISINDNHYKTEIASRCVELAEQFA 418 (969)
Q Consensus 356 ~~cL~D~D~sIR~kaLdLL~~L~n~~-Nv-~~I-----------V~eLl~yl~~~~D~~~k~eli~~I~~laekya 418 (969)
..++.+++..||+.|.+++..|+... .+ +.+ ++-|+.++. ..|...|+.+.-+++.++..++
T Consensus 612 ~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~-s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 612 ENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ-LSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCh
Confidence 88888888999999999999987543 22 122 344556664 5788899999988888865543
No 70
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.71 E-value=0.0092 Score=75.09 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=85.5
Q ss_pred cchhHHHHHHHHhhhccCchHHH-HHHHHHHhhhc------CccHHHHHHHHHHHHccccc---------------chHh
Q 002083 87 LVLKRTGYLAVTLFLNEDHDLII-LIVNTIQKDLK------SDNYLIVCAALNAVCKLINE---------------ETIP 144 (969)
Q Consensus 87 ~~~KRlgYLals~~~~~~~dlll-L~iNtLqKDL~------s~N~~vralALr~Ls~I~~~---------------el~~ 144 (969)
...|+.+.-++..+....++..+ .+.+.++.=++ ++|...|=.||.+++.|... ++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 45677777777666665554332 33344444343 56667787888877776311 3444
Q ss_pred hHHHHHHHhcCCC---ChHHHHHHHHHHHHHHhhC-CcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002083 145 AVLPQVVELLGHS---KEAVRRKAIMALHRFYQKS-PSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLIT 211 (969)
Q Consensus 145 ~l~~~V~~lL~d~---~pyVRKkA~lal~kiy~~~-Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~ 211 (969)
.+...|...|.++ +|+||..|+.++.++.... |+.+..+++.+...|.|.++-|..+|..+|..++.
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 4445567777777 9999999999999987753 45666778888888889899998888888888775
No 71
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.19 Score=61.53 Aligned_cols=429 Identities=10% Similarity=0.080 Sum_probs=222.5
Q ss_pred CccHHHHHHHHHHHHcccc--cchHhhHHHHHHH-hc----C--CCChHHHHHHHHHHHHHHhhCCcchh------hHHH
Q 002083 121 SDNYLIVCAALNAVCKLIN--EETIPAVLPQVVE-LL----G--HSKEAVRRKAIMALHRFYQKSPSSVQ------HLVS 185 (969)
Q Consensus 121 s~N~~vralALr~Ls~I~~--~el~~~l~~~V~~-lL----~--d~~pyVRKkA~lal~kiy~~~Pe~v~------~l~~ 185 (969)
...+-+|+++|-.++++.. ++-....+..... ++ . ...+++ .++-++.-+|-..|+... .+.+
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~--~~~~~l~~lfPi~p~~~s~lfl~e~~~~ 258 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLS--IIVKTLSELYPSLTTLCSEIFLTKGLSK 258 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHTTTTHHHHHHHHSTTTHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHH--HHHHHHHHHhcCCHHHHHHHHccccHHH
Confidence 3445566666666655421 2222223333333 33 1 344444 566777777888888653 3566
Q ss_pred HHHHhh-cCCChhHHHHHHHHHHHhhhhCchhhHHHH-HHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCC
Q 002083 186 NFRKRL-CDNDPGVMGATLCPLFDLITVDVNSYKDLV-ISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGS 263 (969)
Q Consensus 186 ~l~~lL-~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv-~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~ 263 (969)
.+.+.+ .+++..+..+++.+|...|.+ +.++.++ .+++..|.+++..+ + + ..|.-+-|.|+-..-..
T Consensus 259 ~l~~~~~~~~~~~~~~a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~~---~-----i-r~lAavvL~KL~~~~~~ 327 (778)
T 3opb_A 259 LFKKRVFEEQDLQFTKELLRLLSSACID--ETMRTYITENYLQLLERSLNVE---D-----V-QIYSALVLVKTWSFTKL 327 (778)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTSG---G-----G-HHHHHHHHHHHTGGGTC
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhccH---H-----H-HHHHHHHHHHHhcCCCC
Confidence 666666 445666666777666655532 3345554 45667777664310 0 0 11332223332221111
Q ss_pred CChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHH------HHHHHHHHHhcC-CChhHHHHHHHH
Q 002083 264 GDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIE------SAADVIARFLKS-DSHNLKYMGIDA 336 (969)
Q Consensus 264 ~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~------~ai~~L~~fL~s-~d~NlrYvaL~~ 336 (969)
. ....+++.+.+.+.|.+.+ .-..--|+..+.++..+++..+ .++..|..++.+ .+..+.|-++..
T Consensus 328 ~-~~si~~La~~~~~~L~~~~------~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~I 400 (778)
T 3opb_A 328 T-CINLKQLSEIFINAISRRI------VPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVI 400 (778)
T ss_dssp T-TCCHHHHHHHHHHHTTTCC------HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHH
T ss_pred C-cCcHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 1 1112334455555554321 1225567777777766655443 346667777774 677889999998
Q ss_pred HHHHHhhChhH---------------------------------HHHhH----------HhhccccCCCchHHHHHHHHH
Q 002083 337 LGRLIKTSPEI---------------------------------AEQHQ----------LAVIDCLEDPDDTLKRKTFEL 373 (969)
Q Consensus 337 L~~I~~~~P~l---------------------------------~~~h~----------~~I~~cL~D~D~sIR~kaLdL 373 (969)
|..+....|.. +..+. ..++.++..++..+|..+..+
T Consensus 401 L~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~a 480 (778)
T 3opb_A 401 MANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRI 480 (778)
T ss_dssp HHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred HHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHH
Confidence 88887644321 00101 124456678889999999999
Q ss_pred hhcccCC-CcHHHH-----HHHHHHHHhhcCCh--hhHHHHHHHHHHHhhh------cCC-chHHHHHHHHHHHhhhCcc
Q 002083 374 LYKMTKS-SNVEVI-----VDRMIDYMISINDN--HYKTEIASRCVELAEQ------FAP-SNHWFIQTMNKVFEHAGDL 438 (969)
Q Consensus 374 L~~L~n~-~Nv~~I-----V~eLl~yl~~~~D~--~~k~eli~~I~~laek------yap-~~~W~Id~L~~ll~~~gd~ 438 (969)
|+.|+.. +|...+ ++-|+.++....+. ..|..++.+++.++.. |.. ...--|..|+.++....+.
T Consensus 481 L~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~ 560 (778)
T 3opb_A 481 IYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPV 560 (778)
T ss_dssp HHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCc
Confidence 9999754 444443 45577887754332 2688888888888742 211 1124567777777621110
Q ss_pred ----------c----hHHHHHHHHHHHhcccCCCccccchhHHH------HHHHHHHHHhCCCCCchhHHHHHHHHhccc
Q 002083 439 ----------V----NIKVAHNLMRLIAEGFGEDDDNADSQLRS------SAVESYLRIIGEPKLPSVFLQVICWVLGEY 498 (969)
Q Consensus 439 ----------v----~~ev~~~li~lI~~~~g~~~~~~~p~lr~------~av~~l~~lL~d~~~~e~l~~~i~WILGEY 498 (969)
+ .-+.+-.+-++... .+ +...+.|. .++..+.+++.+. ...+.+.++|++.-.
T Consensus 561 ~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~-n~~E~~r~~Ii~~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL 633 (778)
T 3opb_A 561 DDNPLHNDEQIKLTDNYEALLALTNLASS----ET-SDGEEVCKHIVSTKVYWSTIENLMLDE--NVPLQRSTLELISNM 633 (778)
T ss_dssp SSCC---CCCCCHHHHHHHHHHHHHHHHC----CS-HHHHHHHHHHHHSHHHHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcC----Cc-ccchHHHHHHHHhcCHHHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 1 11222223333321 00 00012333 3555666666553 234566777887655
Q ss_pred cCCCC----C----CChHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhc-cccCCCcHHHHHHHHHHhcC--
Q 002083 499 GTADG----K----VSASY--ITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAA-GRKVDMLPECQSLIEELSAS-- 565 (969)
Q Consensus 499 ~~~~~----~----~~~~~--Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~-~~~~~~~~~~~~lL~~~l~s-- 565 (969)
..... . ..+.. =+..|+.++. .++..+|..+.-|++-+....+.. ....+ .++.++.+-.++.+
T Consensus 634 ~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~--s~D~~~r~AAagALAnLts~~~~ia~~ll~-~~~gi~~Ll~lL~~~~ 710 (778)
T 3opb_A 634 MSHPLTIAAKFFNLENPQSLRNFNILVKLLQ--LSDVESQRAVAAIFANIATTIPLIAKELLT-KKELIENAIQVFADQI 710 (778)
T ss_dssp HTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred hCCcHHHHHHHHhhcCchhhccHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCChHHHHHHHH-ccccHHHHHHHHhccC
Confidence 43210 0 01111 1444555543 467788888887777764322110 00011 12233333344444
Q ss_pred CChhHHhHHHHHHH
Q 002083 566 HSTDLQQRAYELEA 579 (969)
Q Consensus 566 ~d~EVQqRA~Ey~~ 579 (969)
.+.++|.|+..++.
T Consensus 711 ~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 711 DDIELRQRLLMLFF 724 (778)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 79999999987544
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.52 E-value=0.01 Score=60.30 Aligned_cols=210 Identities=17% Similarity=0.204 Sum_probs=138.7
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHh
Q 002083 182 HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 182 ~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l 261 (969)
.+++.+..+|.|.--.|..+|+.++..++...|+.+.+++..++-+|+.-- .=|..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE-------------aIplt----------- 87 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE-------------AIPLT----------- 87 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-------------SHHHH-----------
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-------------cCchH-----------
Confidence 466777788887777899999999999999989888888777777765410 00110
Q ss_pred CCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002083 262 GSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY-ANPKLIESAADVIARFLKSDSHNLKYMGIDALGRL 340 (969)
Q Consensus 262 ~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~-~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I 340 (969)
.|..+.+..+. -+|+++...+..|..-..-.++.+|.=.-..|-.|
T Consensus 88 ---------------------------------qeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeI 134 (253)
T 2db0_A 88 ---------------------------------QEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEI 134 (253)
T ss_dssp ---------------------------------HHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHH
Confidence 11222222111 13666666666665555556777777666788999
Q ss_pred HhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCC--cHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhhhcC
Q 002083 341 IKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSS--NVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFA 418 (969)
Q Consensus 341 ~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~--Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~laekya 418 (969)
+..+|.+...-...|+..+.++|..=|.-+|+.+-+|...+ .+..-+.+|..-+.+ .|.-.|..+|.++..+|+..+
T Consensus 135 aranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D-~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 135 AKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHD-GDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp HHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGC-SSHHHHHHHHHHHHHHHTSCH
T ss_pred HHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcC-cchhhhHHHHHHHHHHHHcCH
Confidence 99999999888889999999999988999999999987654 233345555555554 466678888889999998632
Q ss_pred CchHHHHHHHHHHHhhhCccchHHHHHHHHHH
Q 002083 419 PSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRL 450 (969)
Q Consensus 419 p~~~W~Id~L~~ll~~~gd~v~~ev~~~li~l 450 (969)
. ..-.|+..++=|.-..+.+..+|...+.++
T Consensus 214 k-lRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 214 K-LRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp H-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 2 222333333333333444555555444444
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.52 E-value=0.15 Score=63.66 Aligned_cols=284 Identities=9% Similarity=0.066 Sum_probs=163.6
Q ss_pred HHHHHhhhc---CccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCC--------hHHHHHHHHHHHHHHhhCCcch
Q 002083 112 VNTIQKDLK---SDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSK--------EAVRRKAIMALHRFYQKSPSSV 180 (969)
Q Consensus 112 iNtLqKDL~---s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~--------pyVRKkA~lal~kiy~~~Pe~v 180 (969)
...|.+-|- +.++++++-||-.++-+....- ..+...+...|.+.+ +.||..|+++|.-+|-=.-+
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-- 470 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-- 470 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--
Confidence 445566665 7889999999999986644322 123455555565444 89999999999998753221
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHH
Q 002083 181 QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILAL 260 (969)
Q Consensus 181 ~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~ 260 (969)
++.++.|...|.|.+..+...|..+| .++... ..-.+.+..++..+.. . ..+.|...-.+ -|..
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalAL-Gli~vG-Tgn~~ai~~LL~~~~e---~----------~~e~vrR~aal-gLGl 534 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGM-GLCMLG-TGKPEAIHDMFTYSQE---T----------QHGNITRGLAV-GLAL 534 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHH-HHHHTT-CCCHHHHHHHHHHHHH---C----------SCHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-hhhhcc-cCCHHHHHHHHHHHhc---c----------CcHHHHHHHHH-HHHh
Confidence 24566677777777764332222222 222111 1111223333333321 1 12455544322 3444
Q ss_pred hCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHH--hc-CCCHHHHHHHHHHHHHHh-cCCChhHHHHHHHH
Q 002083 261 LGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVS--SI-YANPKLIESAADVIARFL-KSDSHNLKYMGIDA 336 (969)
Q Consensus 261 l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~--~l-~~~~~ll~~ai~~L~~fL-~s~d~NlrYvaL~~ 336 (969)
+..++++..+.+.+.|.. . . ..-|.|.++-++. +. ..|.. +++.|...+ .+.+.++|-.+...
T Consensus 535 l~~g~~e~~~~li~~L~~----~---~--dp~vRygaa~alglAyaGTGn~~----aIq~LL~~~~~d~~d~VRraAVia 601 (963)
T 4ady_A 535 INYGRQELADDLITKMLA----S---D--ESLLRYGGAFTIALAYAGTGNNS----AVKRLLHVAVSDSNDDVRRAAVIA 601 (963)
T ss_dssp HTTTCGGGGHHHHHHHHH----C---S--CHHHHHHHHHHHHHHTTTSCCHH----HHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhCCChHHHHHHHHHHHh----C---C--CHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHhccCCcHHHHHHHHHH
Confidence 444555555544444332 1 1 1356666655543 22 23433 455444444 34567899999999
Q ss_pred HHHHHhhChhHHHHhHHhhcc-ccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 002083 337 LGRLIKTSPEIAEQHQLAVID-CLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAE 415 (969)
Q Consensus 337 L~~I~~~~P~l~~~h~~~I~~-cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli~~I~~lae 415 (969)
|..|...+|+.+.+ ++. +.++.|+.||+.+.--|-.++-.+.-..+++-|.....+ .|...|..++.+++.+..
T Consensus 602 LGlI~~g~~e~v~r----lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 602 LGFVLLRDYTTVPR----IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD-PVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHTSSSCSSHHH----HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHST
T ss_pred HHhhccCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhc
Confidence 99998778866543 333 345678999999877776666655557788866666655 677888899988887764
Q ss_pred hc----CCchHHHHHHHHHHH
Q 002083 416 QF----APSNHWFIQTMNKVF 432 (969)
Q Consensus 416 ky----ap~~~W~Id~L~~ll 432 (969)
.- .|....+++.|.+.+
T Consensus 677 gtnna~~~rva~~l~~L~~~~ 697 (963)
T 4ady_A 677 QQTEKLNPQVADINKNFLSVI 697 (963)
T ss_dssp TCCTTTCTTHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHH
Confidence 32 223344444444443
No 74
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.45 E-value=0.0038 Score=68.31 Aligned_cols=142 Identities=12% Similarity=0.079 Sum_probs=110.1
Q ss_pred hHHHHHH-hhcCCCcchhHHHHHHHHhhhccCchHHHH-----HHHHHHhhhc-CccHHHHHHHHHHHHcccc--cchH-
Q 002083 74 GYIHAVK-MTHDDNLVLKRTGYLAVTLFLNEDHDLIIL-----IVNTIQKDLK-SDNYLIVCAALNAVCKLIN--EETI- 143 (969)
Q Consensus 74 ~~~~vIk-l~sS~~~~~KRlgYLals~~~~~~~dlllL-----~iNtLqKDL~-s~N~~vralALr~Ls~I~~--~el~- 143 (969)
+..-+|+ ++.+++...|.-+-.++..++..+++.--. ++..|.+=|+ ++++.++..|+.+|++|.. +...
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 4556788 999999999999999998888777653222 2334444444 3578899999999999852 3322
Q ss_pred ----hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc
Q 002083 144 ----PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 144 ----~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
...++.+.++|.+.++-||++|+.++..+...+++... ..++.|..+|...|+.|...|+.+|..+....+
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 24677889999999999999999999999988887654 367888999999999999999999988887654
Q ss_pred h
Q 002083 215 N 215 (969)
Q Consensus 215 ~ 215 (969)
.
T Consensus 242 ~ 242 (296)
T 1xqr_A 242 Q 242 (296)
T ss_dssp H
T ss_pred h
Confidence 3
No 75
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.43 E-value=0.0051 Score=67.36 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=103.0
Q ss_pred HHHHh-hhcCccHHHHHHHHHHHHcccc--cchH-----hhHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhCCcchh--
Q 002083 113 NTIQK-DLKSDNYLIVCAALNAVCKLIN--EETI-----PAVLPQVVELLG-HSKEAVRRKAIMALHRFYQKSPSSVQ-- 181 (969)
Q Consensus 113 NtLqK-DL~s~N~~vralALr~Ls~I~~--~el~-----~~l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~~Pe~v~-- 181 (969)
..|.+ -|.++++.+|..|+.+|++|.. ++.- ...++.+.++|. ++++-||++|+.|+..+.+-+|....
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~ 163 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 163 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 34445 7899999999999999999863 3221 146678888888 46899999999999999988776432
Q ss_pred ---hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH-----HHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHH
Q 002083 182 ---HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK-----DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIR 253 (969)
Q Consensus 182 ---~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~-----~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQik 253 (969)
..++.|..+|.+.|+.|...|+.+|..++..+++... ..++.++.+|. .+++=.|..
T Consensus 164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~---------------~~d~~v~~~ 228 (296)
T 1xqr_A 164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR---------------TEHSPFHEH 228 (296)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT---------------SCCSTHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc---------------CCChhHHHH
Confidence 3678888999999999999999999888876654322 23455565553 135667888
Q ss_pred HHHHHHHhCCCCh
Q 002083 254 LLKILALLGSGDK 266 (969)
Q Consensus 254 LLklL~~l~~~d~ 266 (969)
.++.|..+....+
T Consensus 229 al~aL~~l~~~~~ 241 (296)
T 1xqr_A 229 VLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCh
Confidence 8888877766543
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.34 E-value=6.2e-05 Score=71.67 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=69.0
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhh
Q 002083 112 VNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRL 191 (969)
Q Consensus 112 iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL 191 (969)
++.+.+.|+|+|+.+|..|+..|+.+..+. .+.+.++|.|+++.||..|+.++.++-. +..++.+.++|
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHH
Confidence 456778899999999999999999998764 3778899999999999999999988752 23467777888
Q ss_pred cCCChhHHHHHHHHHHHhh
Q 002083 192 CDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 192 ~D~D~~Vv~aAl~~L~ei~ 210 (969)
.|.|+.|..+|+.+|..+.
T Consensus 83 ~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhC
Confidence 8999999999988887653
No 77
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.32 E-value=0.044 Score=68.40 Aligned_cols=276 Identities=11% Similarity=0.088 Sum_probs=158.6
Q ss_pred CCCcchhHHHHHHHHhhhccC-chHHHHHHHHHHhhhc--C--ccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCC
Q 002083 84 DDNLVLKRTGYLAVTLFLNED-HDLIILIVNTIQKDLK--S--DNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSK 158 (969)
Q Consensus 84 S~~~~~KRlgYLals~~~~~~-~dlllL~iNtLqKDL~--s--~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~ 158 (969)
+++-..|-=+.+++.+..... .+..-++.+.|..+-. + .++.+|..|.-.|+-+.-..--+.+...++..|.+.+
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~ 485 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS 485 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC
Confidence 344445565666666544332 2444455555555420 0 1366665555588765333223456677788888888
Q ss_pred hHHHHHHHHHHHHHHhhC--CcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccC
Q 002083 159 EAVRRKAIMALHRFYQKS--PSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRL 236 (969)
Q Consensus 159 pyVRKkA~lal~kiy~~~--Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~l 236 (969)
+.+|..|+++|..+|.=. .+.++.++..+. .|.+-.|...+...|--+...+++. ++.+++.|...
T Consensus 486 ~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~g~~e~----~~~li~~L~~~----- 553 (963)
T 4ady_A 486 ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALINYGRQEL----ADDLITKMLAS----- 553 (963)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCGGG----GHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhCCChHH----HHHHHHHHHhC-----
Confidence 899999999999987643 344555444433 3445555554444444444445544 34455666542
Q ss_pred CCCcCCCCCCChhHHHHHHHH--HHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC-CCHHHHHH
Q 002083 237 PKSYDYHQMPAPFIQIRLLKI--LALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY-ANPKLIES 313 (969)
Q Consensus 237 p~~y~y~~v~~PWlQikLLkl--L~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~-~~~~ll~~ 313 (969)
.+|+...-..-. +...+.++....+.++.+ +.... ..-|...|+-.+..+. .+++.
T Consensus 554 ---------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~d~------~d~VRraAViaLGlI~~g~~e~--- 612 (963)
T 4ady_A 554 ---------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVSDS------NDDVRRAAVIALGFVLLRDYTT--- 612 (963)
T ss_dssp ---------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHHCS------CHHHHHHHHHHHHHHTSSSCSS---
T ss_pred ---------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hccCC------cHHHHHHHHHHHHhhccCCHHH---
Confidence 255554443222 234466666444433332 22211 1235555555554432 23332
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhChh--HHHHhHHhhccccCCCchHHHHHHHHHhhccc---CCC---cHHH
Q 002083 314 AADVIARFLKSDSHNLKYMGIDALGRLIKTSPE--IAEQHQLAVIDCLEDPDDTLKRKTFELLYKMT---KSS---NVEV 385 (969)
Q Consensus 314 ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~--l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~---n~~---Nv~~ 385 (969)
+...+..+..+.++++||-+..+|..+..-+|. ++ ..+..++.|+|..+|+-|+.-|-.+. |+. .+..
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~ai----d~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~ 688 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAI----DVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHH----HHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHH----HHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHH
Confidence 233334456678899999999999999876663 33 24455678999999999776665544 333 4778
Q ss_pred HHHHHHHHHhh
Q 002083 386 IVDRMIDYMIS 396 (969)
Q Consensus 386 IV~eLl~yl~~ 396 (969)
+.+.|..|+.+
T Consensus 689 ~l~~L~~~~~d 699 (963)
T 4ady_A 689 INKNFLSVITN 699 (963)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 88888888763
No 78
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.17 E-value=0.95 Score=56.41 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=86.3
Q ss_pred cCCCcchhHHHHHHHHhhhccC----chHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc-----cchHhhHHHHHHHh
Q 002083 83 HDDNLVLKRTGYLAVTLFLNED----HDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN-----EETIPAVLPQVVEL 153 (969)
Q Consensus 83 sS~~~~~KRlgYLals~~~~~~----~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~-----~el~~~l~~~V~~l 153 (969)
.+.+...|..++.++..+.+.- .+.+.-+++.+ -.+.++++.+|..|+.+++++.. ++..+.+++.+...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 537 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHA 537 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 5567888888888888777531 23333334432 35666789999999999987643 56788888999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhCCcch----hhHHHHHHHhhcC--CChhHHHHHHHHHHHhh
Q 002083 154 LGHSKEAVRRKAIMALHRFYQKSPSSV----QHLVSNFRKRLCD--NDPGVMGATLCPLFDLI 210 (969)
Q Consensus 154 L~d~~pyVRKkA~lal~kiy~~~Pe~v----~~l~~~l~~lL~D--~D~~Vv~aAl~~L~ei~ 210 (969)
|.+ +-||..|+.++.++.+..++.+ +.+++.+..++.. -+..+...++.++..++
T Consensus 538 l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 538 LGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp TTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 976 7899999999999998776644 3455666666653 34455544444444444
No 79
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.15 E-value=0.17 Score=65.50 Aligned_cols=53 Identities=6% Similarity=0.089 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHHHHHHhhC-CcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 157 SKEAVRRKAIMALHRFYQKS-PSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 157 ~~pyVRKkA~lal~kiy~~~-Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
..++||.+.+.++..|++.+ |+.=+++++.+..++.. ++...-.++.+|..++
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLA 161 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 46899999999999998874 65555666667666654 4444444555554443
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.12 E-value=0.0068 Score=63.78 Aligned_cols=177 Identities=19% Similarity=0.274 Sum_probs=137.3
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcch-----hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc---h
Q 002083 144 PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV-----QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV---N 215 (969)
Q Consensus 144 ~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v-----~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p---~ 215 (969)
+..+..+..+|.+.++.||=+|+.++-++.+..|+.. +.+++.+.+++.+.|-.|...|+-++-.++...| +
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3456778899999999999999999999999977644 5688999999999999999999888877776543 5
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHH
Q 002083 216 SYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLY 295 (969)
Q Consensus 216 ~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVly 295 (969)
.|..+...+.++++ -+++-++..+...+..+...++ +..+.++|..++.+ .| .-|--
T Consensus 112 ~y~Kl~~aL~dlik---------------~~~~il~~eaae~Lgklkv~~~--~~~V~~~l~sLl~S----kd--~~vK~ 168 (265)
T 3b2a_A 112 TFLKAAKTLVSLLE---------------SPDDMMRIETIDVLSKLQPLED--SKLVRTYINELVVS----PD--LYTKV 168 (265)
T ss_dssp HHHHHHHHHHHHTT---------------SCCHHHHHHHHHHHHHCCBSCC--CHHHHHHHHHHHTC----SS--HHHHH
T ss_pred HHHHHHHHHHHHhc---------------CCCchHHHHHHHHhCcCCcccc--hHHHHHHHHHHHhC----CC--hhHHH
Confidence 67666666665544 2588899999999988854332 45677788888842 33 24555
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 002083 296 ECICCVSSI---YANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKT 343 (969)
Q Consensus 296 Eaik~I~~l---~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~ 343 (969)
.+++++..+ ..+++.++..++-+..||.+.|+.++=.||..+..|...
T Consensus 169 agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 169 AGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 666666655 456777888888899999999999999999999998865
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.07 E-value=0.039 Score=61.82 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=135.5
Q ss_pred ccHHHHHHHHHHHHcccc-----cchH---hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-CCc---chh--hHHHHH
Q 002083 122 DNYLIVCAALNAVCKLIN-----EETI---PAVLPQVVELLGHSKEAVRRKAIMALHRFYQK-SPS---SVQ--HLVSNF 187 (969)
Q Consensus 122 ~N~~vralALr~Ls~I~~-----~el~---~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~-~Pe---~v~--~l~~~l 187 (969)
.++.++-.|..+|.+|.. ...+ .-++|.+.++|.+.++.||..|+-+|..+-.. +++ .+. ..++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 456677677777766642 2222 23588999999999999999999999998764 333 221 357778
Q ss_pred HHh-hcCCChhHHHHHHHHHHHhhhhCchhh------HHHHHHHHHHHHHHHhccCCCCcCCCCCCChh--HHHHHHHHH
Q 002083 188 RKR-LCDNDPGVMGATLCPLFDLITVDVNSY------KDLVISFVSILKQVAERRLPKSYDYHQMPAPF--IQIRLLKIL 258 (969)
Q Consensus 188 ~~l-L~D~D~~Vv~aAl~~L~ei~~~~p~~~------~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PW--lQikLLklL 258 (969)
.++ +...++.+...|+.+|..+...+...- ...+|.|+++|+ .. -..+| .+......|
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~----~~---------~~~~~~~v~~~A~~aL 242 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT----YR---------SQTNTLAIIESGGGIL 242 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT----CC---------CSSSCCHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc----cC---------CCcccHHHHHHHHHHH
Confidence 886 456788999888899988876333211 233455555543 11 11234 344445555
Q ss_pred HHhCC---CChHHHhhh-----HHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC-CCHHHHH-----HHHHHHHHHhcC
Q 002083 259 ALLGS---GDKQASENM-----YTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY-ANPKLIE-----SAADVIARFLKS 324 (969)
Q Consensus 259 ~~l~~---~d~~~se~l-----~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~-~~~~ll~-----~ai~~L~~fL~s 324 (969)
..++. .++.....+ ++.|..+|++. ...+.-+|+.++.++. .+++-.. .++..|..+|.+
T Consensus 243 ~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s 316 (354)
T 3nmw_A 243 RNVSSLIATNEDHRQILRENNCLQTLLQHLKSH------SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 316 (354)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC------ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 55443 344333332 34555666632 2468899999999887 3554332 257889999999
Q ss_pred CChhHHHHHHHHHHHHHhhChhH
Q 002083 325 DSHNLKYMGIDALGRLIKTSPEI 347 (969)
Q Consensus 325 ~d~NlrYvaL~~L~~I~~~~P~l 347 (969)
.+..+|-.+..+|..|....|..
T Consensus 317 ~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 317 KHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCGG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999887764
No 82
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.03 E-value=0.062 Score=68.36 Aligned_cols=107 Identities=8% Similarity=0.202 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhhhcC--ccHHHHH---HHHHHHHccccc----chHhhHHHHHHHhcCC-----CChHHHHHHHHHHHH
Q 002083 106 DLIILIVNTIQKDLKS--DNYLIVC---AALNAVCKLINE----ETIPAVLPQVVELLGH-----SKEAVRRKAIMALHR 171 (969)
Q Consensus 106 dlllL~iNtLqKDL~s--~N~~vra---lALr~Ls~I~~~----el~~~l~~~V~~lL~d-----~~pyVRKkA~lal~k 171 (969)
|+.-.+.+.+++-+.+ .+-..+- .|+.+++.-..+ ..++.+++.+..++.+ +++.||..++.++.|
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 6666677777777765 3445554 455554433333 2455677777777763 677899999899887
Q ss_pred HHh---hCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002083 172 FYQ---KSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 172 iy~---~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~ 212 (969)
+.+ .+|+.++..+..+-+.+.|.++.|..+|..+|..++..
T Consensus 527 y~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 527 YPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 544 57888888899999999999999999998888888754
No 83
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.01 E-value=1 Score=56.94 Aligned_cols=271 Identities=12% Similarity=0.056 Sum_probs=136.8
Q ss_pred CcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc---cc----hHhhHHHHHHHhcC---
Q 002083 86 NLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN---EE----TIPAVLPQVVELLG--- 155 (969)
Q Consensus 86 ~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~---~e----l~~~l~~~V~~lL~--- 155 (969)
+-..|+-++-++..+-. ++|--..+...+.+. ...++.+|-.|+.+|-+.+. ++ -...+-..|...+.
T Consensus 21 d~~~r~~A~~~L~~~q~-sp~aw~~~~~iL~~~-~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~ 98 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRS-SSTGWKICHEIFSEK-TKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELS 98 (980)
T ss_dssp CHHHHHHHHHHHHHHHH-STTHHHHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHc-ChhHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhc
Confidence 55666666666666543 355443333333221 11266777777766654332 33 33334444444443
Q ss_pred --CCChHHHHHHHHHHHHHHhh-CCcchhhHHHHHHHhhcCCCh-hHHHHHHHHHH---Hhhhh-C----c------hhh
Q 002083 156 --HSKEAVRRKAIMALHRFYQK-SPSSVQHLVSNFRKRLCDNDP-GVMGATLCPLF---DLITV-D----V------NSY 217 (969)
Q Consensus 156 --d~~pyVRKkA~lal~kiy~~-~Pe~v~~l~~~l~~lL~D~D~-~Vv~aAl~~L~---ei~~~-~----p------~~~ 217 (969)
...++||.|.+.++..+++. +|+.=+.+++.+..++...++ .++...+.+|. |=+.+ . . ...
T Consensus 99 ~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~l 178 (980)
T 3ibv_A 99 FLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLV 178 (980)
T ss_dssp STTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHH
Confidence 34689999999999999886 466555666666666644333 23223333433 21111 0 0 011
Q ss_pred HHH---------HHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH---HHhhhHHHHHHhHhccCC
Q 002083 218 KDL---------VISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ---ASENMYTVVGDIFRKCDS 285 (969)
Q Consensus 218 ~~L---------v~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~---~se~l~~iL~~iL~~~~~ 285 (969)
++. ++.++.+|.+... -.++=+..+.|+.|..|..+-+- ....+.+.+..+|..
T Consensus 179 kd~m~~~~~~~i~~~~~~iL~~~~~-----------~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--- 244 (980)
T 3ibv_A 179 KDAIRANDMSDIVSFVYEMMLAYSN-----------AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--- 244 (980)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS---
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhc-----------cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC---
Confidence 221 3344444444321 12455678899999988875331 113344555454442
Q ss_pred CCCCCchHHHHHHHHHHhc---CCCHHHHHHHHHH--HHHHhc-----CCChhHHHHH-------HHHHHHHHhhCh---
Q 002083 286 SSNIGNAVLYECICCVSSI---YANPKLIESAADV--IARFLK-----SDSHNLKYMG-------IDALGRLIKTSP--- 345 (969)
Q Consensus 286 ~~Ni~~AVlyEaik~I~~l---~~~~~ll~~ai~~--L~~fL~-----s~d~NlrYva-------L~~L~~I~~~~P--- 345 (969)
..+.-.|+.|+..+ ..+++-....+.. |...+. ..|.++.--. -..+..+ ...|
T Consensus 245 -----~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~ 318 (980)
T 3ibv_A 245 -----EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSEL 318 (980)
T ss_dssp -----HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--
T ss_pred -----hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCcccc
Confidence 24555555555444 3333322111211 122221 2445532100 1122222 2344
Q ss_pred ---------hHHHHhHHhhccccCCCchHHHHHHHHHhhccc
Q 002083 346 ---------EIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMT 378 (969)
Q Consensus 346 ---------~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~ 378 (969)
..+......++.|..++|..|-..+++.+....
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 445566777889999988888888888776544
No 84
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.91 E-value=0.089 Score=62.96 Aligned_cols=252 Identities=13% Similarity=0.121 Sum_probs=151.0
Q ss_pred cCCCcchhHHHHHHHHhhhccCchH-----HHHHHHHHHhhhcCccHHHHHHHHHHHHcccccch---------------
Q 002083 83 HDDNLVLKRTGYLAVTLFLNEDHDL-----IILIVNTIQKDLKSDNYLIVCAALNAVCKLINEET--------------- 142 (969)
Q Consensus 83 sS~~~~~KRlgYLals~~~~~~~dl-----llL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el--------------- 142 (969)
++.-++.||-+-+++.-+..+-++. +--.+++|++|-. +..++..+|-+|.++..++-
T Consensus 32 ~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~ 109 (651)
T 3grl_A 32 SSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL 109 (651)
T ss_dssp HCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred hccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence 3444455555555555554443332 3355666777643 22344446666655443321
Q ss_pred ----H------hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-------hHHHHHHHhhcCCChhHHHHHHHH
Q 002083 143 ----I------PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-------HLVSNFRKRLCDNDPGVMGATLCP 205 (969)
Q Consensus 143 ----~------~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-------~l~~~l~~lL~D~D~~Vv~aAl~~ 205 (969)
+ +.-++.+..+|...+-|||-.|+.+|..+....|+.+. .-++.|..+|.|..--+...|+.+
T Consensus 110 ~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 110 GSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 1 23356778899999999999999999999999988543 357888999999888888889999
Q ss_pred HHHhhhhCchh-----hHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhh-----HHH
Q 002083 206 LFDLITVDVNS-----YKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENM-----YTV 275 (969)
Q Consensus 206 L~ei~~~~p~~-----~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l-----~~i 275 (969)
|.++.+.+++. |...++.++++++.- + ++..--..-..|.++..+.+.++.....+ .+-
T Consensus 190 L~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E--g---------~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~ 258 (651)
T 3grl_A 190 LQALTRSNGAIQKIVAFENAFERLLDIITEE--G---------NSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQR 258 (651)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH--T---------GGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGG
T ss_pred HHHHhcCCHHHHHHHHHhccHHHHHHHHHhc--C---------CCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 99999988753 445567777777652 1 11122344566777777766654221111 122
Q ss_pred HHHhHhccCCC------CCCCchHHHHHHHHHHhcCCC-------HHHHH--HHHHHHHHHhcCC--ChhHHHHHHHHHH
Q 002083 276 VGDIFRKCDSS------SNIGNAVLYECICCVSSIYAN-------PKLIE--SAADVIARFLKSD--SHNLKYMGIDALG 338 (969)
Q Consensus 276 L~~iL~~~~~~------~Ni~~AVlyEaik~I~~l~~~-------~~ll~--~ai~~L~~fL~s~--d~NlrYvaL~~L~ 338 (969)
|..+++..+.. +...--.++++|++++.=... ...+. .....|.+++.+. ...++-.+|.++.
T Consensus 259 L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla 338 (651)
T 3grl_A 259 MKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVS 338 (651)
T ss_dssp GGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 33333322111 000112245666665542111 11111 1456778887764 4679999999999
Q ss_pred HHHhhChhH
Q 002083 339 RLIKTSPEI 347 (969)
Q Consensus 339 ~I~~~~P~l 347 (969)
.++.-+|..
T Consensus 339 ~~irgN~~~ 347 (651)
T 3grl_A 339 EVIRGCQVN 347 (651)
T ss_dssp HHHTTCHHH
T ss_pred HHHhCCHHH
Confidence 999888643
No 85
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.91 E-value=0.036 Score=64.34 Aligned_cols=206 Identities=14% Similarity=0.124 Sum_probs=133.3
Q ss_pred ccHHHHHHHHHHHHcccc-----cchH---hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-CCcc---hh--hHHHHH
Q 002083 122 DNYLIVCAALNAVCKLIN-----EETI---PAVLPQVVELLGHSKEAVRRKAIMALHRFYQK-SPSS---VQ--HLVSNF 187 (969)
Q Consensus 122 ~N~~vralALr~Ls~I~~-----~el~---~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~-~Pe~---v~--~l~~~l 187 (969)
.++.++-.|..+|.+|.. ..++ .-++|.+.++|.+.++.||..|+-||..+-.. +++. +. ..++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 455566666666655542 2222 24588999999999999999999999988653 3332 21 357778
Q ss_pred HHhh-cCCChhHHHHHHHHHHHhhhhCchhh------HHHHHHHHHHHHHHHhccCCCCcCCCCCCChh--HHHHHHHHH
Q 002083 188 RKRL-CDNDPGVMGATLCPLFDLITVDVNSY------KDLVISFVSILKQVAERRLPKSYDYHQMPAPF--IQIRLLKIL 258 (969)
Q Consensus 188 ~~lL-~D~D~~Vv~aAl~~L~ei~~~~p~~~------~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PW--lQikLLklL 258 (969)
.++| ...++.+...|+.+|..+...+...- ...+|.++++|. + .-..+| ++......|
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~----~---------~~~~~~~~v~~~A~~aL 358 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT----Y---------RSQTNTLAIIESGGGIL 358 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT----C---------CCSSSTTHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc----C---------CCCcchHHHHHHHHHHH
Confidence 8864 55688999988999988876333211 123445555542 1 111344 344445555
Q ss_pred HHhCC---CChHHHhhh-----HHHHHHhHhccCCCCCCCchHHHHHHHHHHhcC-CCHHHHH-----HHHHHHHHHhcC
Q 002083 259 ALLGS---GDKQASENM-----YTVVGDIFRKCDSSSNIGNAVLYECICCVSSIY-ANPKLIE-----SAADVIARFLKS 324 (969)
Q Consensus 259 ~~l~~---~d~~~se~l-----~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~-~~~~ll~-----~ai~~L~~fL~s 324 (969)
..++. .++.....+ ++.|..+|+.. ...+..+|+.++.++. .+++... -++..|..+|.+
T Consensus 359 ~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~------~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 359 RNVSSLIATNEDHRQILRENNCLQTLLQHLKSH------SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS------CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred HHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC------ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 55442 444333333 34455555532 2468899999998886 3444332 257789999999
Q ss_pred CChhHHHHHHHHHHHHHhhChh
Q 002083 325 DSHNLKYMGIDALGRLIKTSPE 346 (969)
Q Consensus 325 ~d~NlrYvaL~~L~~I~~~~P~ 346 (969)
.+..++-.+..+|..|+..+|.
T Consensus 433 ~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp SSHHHHHHHHHHHHHHHTCCSC
T ss_pred CCHHHHHHHHHHHHHHHcCCHh
Confidence 9999999999999999988774
No 86
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.69 E-value=1.5 Score=55.63 Aligned_cols=107 Identities=5% Similarity=0.032 Sum_probs=61.9
Q ss_pred hcCccHHHHHHHHHHHHcccc-cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-----CcchhhHHHHHHHhhc
Q 002083 119 LKSDNYLIVCAALNAVCKLIN-EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKS-----PSSVQHLVSNFRKRLC 192 (969)
Q Consensus 119 L~s~N~~vralALr~Ls~I~~-~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~-----Pe~v~~l~~~l~~lL~ 192 (969)
+.+++.-.|..|-..|-.+.. ++....+...+. ++.+++||--|+..+-+..+.+ ++....+-+.+...+.
T Consensus 25 ~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~ 101 (1049)
T 3m1i_C 25 FYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMII 101 (1049)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHH
Confidence 444555578888877776643 443333322222 2668999999999999887653 2222233344444432
Q ss_pred C----C-----ChhHHHHHHHHHHHhhhh-CchhhHHHHHHHHHHH
Q 002083 193 D----N-----DPGVMGATLCPLFDLITV-DVNSYKDLVISFVSIL 228 (969)
Q Consensus 193 D----~-----D~~Vv~aAl~~L~ei~~~-~p~~~~~Lv~~lv~iL 228 (969)
+ . ++.|......++.+|.+. -|+.|..+++.+++.+
T Consensus 102 ~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~ 147 (1049)
T 3m1i_C 102 SMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS 147 (1049)
T ss_dssp HHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH
T ss_pred hhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 2 1 355554444455566554 3567877777777765
No 87
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.47 E-value=2.2 Score=54.49 Aligned_cols=109 Identities=12% Similarity=0.239 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHhhhcCcc-----HHHHHHHHHHHHccccc----chHhhHHHHHHHhcCCC-----ChHHHHHHHHHHHH
Q 002083 106 DLIILIVNTIQKDLKSDN-----YLIVCAALNAVCKLINE----ETIPAVLPQVVELLGHS-----KEAVRRKAIMALHR 171 (969)
Q Consensus 106 dlllL~iNtLqKDL~s~N-----~~vralALr~Ls~I~~~----el~~~l~~~V~~lL~d~-----~pyVRKkA~lal~k 171 (969)
+..-.+...+++-+.+++ ----+.|+++|+.-..+ ..++.+++.+..+..++ ++.||...+..+.+
T Consensus 473 ~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgr 552 (1073)
T 3gjx_A 473 DTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQ 552 (1073)
T ss_dssp HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhh
Confidence 444455667776655432 34447888888665544 34566666666666555 45566665556655
Q ss_pred ---HHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc
Q 002083 172 ---FYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 172 ---iy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
....+|+.++..+.++-+.+.|.+++|..+|..+|..++.+-.
T Consensus 553 Y~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 553 YPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred hHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4456888888888999999999999999988888887776543
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.024 Score=60.63 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhCCcch---------hhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002083 150 VVELLGHSKEAVRRKAIMALHRFYQKSPSSV---------QHLVSNFRKRLCDNDPGVMGATLCPLFDLIT 211 (969)
Q Consensus 150 V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v---------~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~ 211 (969)
+...|.|++--.|+.|+..+.+++...+... ..+...+.+.+.|.|..|+..++.++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~ 84 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLID 84 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999998765322 2345667788999999999998888776664
No 89
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.33 E-value=0.15 Score=64.63 Aligned_cols=138 Identities=11% Similarity=0.129 Sum_probs=93.5
Q ss_pred hHHHHHHHHhhhccCchHHHH-----HHHHHHhhhc---CccHHHHHHHHHHHHccccc------------chHhhHHHH
Q 002083 90 KRTGYLAVTLFLNEDHDLIIL-----IVNTIQKDLK---SDNYLIVCAALNAVCKLINE------------ETIPAVLPQ 149 (969)
Q Consensus 90 KRlgYLals~~~~~~~dlllL-----~iNtLqKDL~---s~N~~vralALr~Ls~I~~~------------el~~~l~~~ 149 (969)
|+++ ...-.+..-++++.+- +-+.++.-+. +.+-..+=+||.+|+.+... +..+.+.+.
T Consensus 416 k~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l 494 (980)
T 3ibv_A 416 KKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI 494 (980)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred HHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence 4555 5555555556776655 3344544452 34566777888887654321 234467777
Q ss_pred HHHhcC-----CCChHHHHHHHHHHHHHHh---hCCcchhhHHHHHHH--hhcCCChhHHHHHHHHHHHhhhhCchhhHH
Q 002083 150 VVELLG-----HSKEAVRRKAIMALHRFYQ---KSPSSVQHLVSNFRK--RLCDNDPGVMGATLCPLFDLITVDVNSYKD 219 (969)
Q Consensus 150 V~~lL~-----d~~pyVRKkA~lal~kiy~---~~Pe~v~~l~~~l~~--lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~ 219 (969)
+.+++. +++|.||..++.++.|... .+|+.++..++.+.. .+.+.++.|..+|..+|..+|+.-.....+
T Consensus 495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~ 574 (980)
T 3ibv_A 495 LALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN 574 (980)
T ss_dssp HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh
Confidence 777765 8999999999999999666 468888888888888 888899999999988988888765543223
Q ss_pred HHHHHHHHH
Q 002083 220 LVISFVSIL 228 (969)
Q Consensus 220 Lv~~lv~iL 228 (969)
.++.+++.+
T Consensus 575 ~~~~il~~l 583 (980)
T 3ibv_A 575 YTESSLAML 583 (980)
T ss_dssp SHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 333333333
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.30 E-value=4.1 Score=51.79 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=92.1
Q ss_pred chhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc-------cchHhhHHHHHHHhc----CC
Q 002083 88 VLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN-------EETIPAVLPQVVELL----GH 156 (969)
Q Consensus 88 ~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~-------~el~~~l~~~V~~lL----~d 156 (969)
..|+-+.-++..+-. +++....+...+.+ +.++.+|-.|+.+|-+.+. ++-...+-..+...+ .+
T Consensus 31 ~~r~~A~~~L~~~q~-sp~aw~~~~~iL~~---s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~ 106 (1023)
T 4hat_C 31 VQQKQAQEILTKFQD-NPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQD 106 (1023)
T ss_dssp HHHHHHHHHHHHHHH-CTTGGGGHHHHHHH---CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHc-CccHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 466777777765543 45544444444432 4567788777777765433 222223333333333 22
Q ss_pred C-----ChHHHHHHHHHHHHHHhhC-CcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-------Cc---------
Q 002083 157 S-----KEAVRRKAIMALHRFYQKS-PSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV-------DV--------- 214 (969)
Q Consensus 157 ~-----~pyVRKkA~lal~kiy~~~-Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~-------~p--------- 214 (969)
+ .++||.|-+.++..+++.. |+.=+++++.+..++... +...-..+.+|..+..+ +.
T Consensus 107 ~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk 185 (1023)
T 4hat_C 107 DEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185 (1023)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 2 4799999999999998865 666666777777777643 33233333333222111 10
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC
Q 002083 215 NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG 264 (969)
Q Consensus 215 ~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~ 264 (969)
+..+.-++.++.++.++++.. .++=+...+|+.|..|..+
T Consensus 186 ~~l~~~~~~I~~ll~~iL~~~----------~~~~l~~~~L~~l~s~l~W 225 (1023)
T 4hat_C 186 NSMSKEFEQIFKLCFQVLEQG----------ASSSLIVATLESLLRYLHW 225 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------SSCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHHHHh
Confidence 112334577777777776531 1344556788888888765
No 91
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.30 E-value=2.1 Score=49.53 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=100.9
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhc
Q 002083 75 YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELL 154 (969)
Q Consensus 75 ~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL 154 (969)
|-.++.. ...+-..||++--++..|+..-|++.--++|++..=+.+.+.-||.-|++.|..++..+.+.-+...+.++|
T Consensus 31 y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 4445554 344689999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCc-chhhHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002083 155 GHSKEAVRRKAIMALHRFYQKSPS-SVQHLVSNFRKRLCDNDPGVMGATLCPLFDLI 210 (969)
Q Consensus 155 ~d~~pyVRKkA~lal~kiy~~~Pe-~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~ 210 (969)
..-.+--+...=-++..+++.+|. .+..++..+.. .|..|.--++..|.+-+
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ----GEDIVRERAIKFLSTKL 162 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc----cchHHHHHHHHHHHHHH
Confidence 987776666666667777788875 33344444443 24555555555554433
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.27 E-value=0.018 Score=62.09 Aligned_cols=140 Identities=10% Similarity=0.097 Sum_probs=89.9
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhh----cCccHHHHHHHHHHHHccc----------ccc
Q 002083 76 IHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDL----KSDNYLIVCAALNAVCKLI----------NEE 141 (969)
Q Consensus 76 ~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL----~s~N~~vralALr~Ls~I~----------~~e 141 (969)
.++...+-++|+..+--|.=.+...+..+++.++-..-.+.|-+ .++|+-+...+|..|..+. .+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 35566666777776666777777777666665433333344433 3778877777777777652 222
Q ss_pred hHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcc-h----------------------------------hhHH--
Q 002083 142 TIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSS-V----------------------------------QHLV-- 184 (969)
Q Consensus 142 l~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~-v----------------------------------~~l~-- 184 (969)
.+..++|.+..-+.|+++-||.++--.+..++..+|-. + ...+
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~ 208 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSV 208 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 24577788888888888888888887777777766532 1 1123
Q ss_pred -HHHHHhhcCCChhHHHHHHHHHHHhhhhCch
Q 002083 185 -SNFRKRLCDNDPGVMGATLCPLFDLITVDVN 215 (969)
Q Consensus 185 -~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~ 215 (969)
+.+.++|.|+|..|..+|+..+.++...-++
T Consensus 209 ~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 5566667777777777777777666554433
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.064 Score=57.31 Aligned_cols=132 Identities=12% Similarity=0.117 Sum_probs=99.2
Q ss_pred HhhcCCCcchhHHHHHHHHhhhccCchH---------HHHHHHHHHhhhcCccHHHHHHHHHHHHccccc----------
Q 002083 80 KMTHDDNLVLKRTGYLAVTLFLNEDHDL---------IILIVNTIQKDLKSDNYLIVCAALNAVCKLINE---------- 140 (969)
Q Consensus 80 kl~sS~~~~~KRlgYLals~~~~~~~dl---------llL~iNtLqKDL~s~N~~vralALr~Ls~I~~~---------- 140 (969)
.-+.|++...|.=||-.+...+...+.. ..-.+..++|-+.|.|..+...||.+++.+...
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 5788999999999999988877643221 112345788899999999999999998765431
Q ss_pred --chHhhHHHHHH-HhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002083 141 --ETIPAVLPQVV-ELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 141 --el~~~l~~~V~-~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~ 212 (969)
..+..+++.+. ++|.+.++-+|.+|.-++..++...-. ...+++.+...+..++|-|...++..|..++..
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-ITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 23455666555 569999999999999999988765422 234567778889999999999998888877654
No 94
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.86 E-value=1 Score=52.13 Aligned_cols=356 Identities=14% Similarity=0.184 Sum_probs=164.5
Q ss_pred HHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002083 130 ALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDL 209 (969)
Q Consensus 130 ALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei 209 (969)
-|+.|+.+...+++++++..|-++|.+. ||-. .+.++|..+|+...+++ ...+.-.|+.+.-++..++.-+
T Consensus 82 ~l~lL~~~~~~d~vqYvL~Li~DlL~~~-~~~~-----~~~~~f~~~~~~~~~l~---~~~~~~dd~~~ll~a~~l~~ll 152 (480)
T 1ho8_A 82 LIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGD-----DTVKFFQEDPKQLEQLF---DVSLKGDFQTVLISGFNVVSLL 152 (480)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSH-----HHHHHHHHCTTHHHHHH---HHCSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHHhcC-cchH-----HHHHHHhhCcccchHHH---HHHhcccchHHHHHHHHHHHHH
Confidence 6677888888999999999999998873 4443 34677788888765422 2223334455544444333223
Q ss_pred hhhCchhhHHHHHHHHH---HHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH------HHhhhHHHHHHhH
Q 002083 210 ITVDVNSYKDLVISFVS---ILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ------ASENMYTVVGDIF 280 (969)
Q Consensus 210 ~~~~p~~~~~Lv~~lv~---iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~------~se~l~~iL~~iL 280 (969)
+...+. -.+..+.+++ ++.++. + . .. .+..+. .+++|+.+.+.+.- ....+.+.+..++
T Consensus 153 ~~~~~~-~~~~l~~l~~~~~~~~~L~-~-~-~~-----~~~~~i---~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il 220 (480)
T 1ho8_A 153 VQNGLH-NVKLVEKLLKNNNLINILQ-N-I-EQ-----MDTCYV---CIRLLQELAVIPEYRDVIWLHEKKFMPTLFKIL 220 (480)
T ss_dssp TSTTTC-CHHHHHHHHHCHHHHHHHH-C-T-TC-----HHHHHH---HHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hccCCc-cHhHHHHHhhhHHHHHHhc-c-c-cC-----CchHHH---HHHHHHHHhcchhHHHHHHHcccchhHHHHHHH
Confidence 322222 2334444444 333331 1 0 00 001233 44444433332210 0112233343444
Q ss_pred hcc-C----------CCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh--hH
Q 002083 281 RKC-D----------SSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSP--EI 347 (969)
Q Consensus 281 ~~~-~----------~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P--~l 347 (969)
++. + .+.+.|.-++|+++-|+..+.-+++..+. +... ++ ..+..|..+++..+ ++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~--------l~~~--~i--~~~~~L~~i~k~s~KEKv 288 (480)
T 1ho8_A 221 QRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANE--------LVQK--YL--SDFLDLLKLVKITIKEKV 288 (480)
T ss_dssp HHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHH--------HHTT--SH--HHHHHHHHHHHHCCSHHH
T ss_pred HHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHH--------HHhc--ch--HHHHHHHHHHHhhccchh
Confidence 422 1 01222445789999999888776653322 1111 11 11223344444432 12
Q ss_pred HHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHh--hcCChhhHHHHHHHHHHHhhhc--CCchHH
Q 002083 348 AEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMI--SINDNHYKTEIASRCVELAEQF--APSNHW 423 (969)
Q Consensus 348 ~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~--~~~D~~~k~eli~~I~~laeky--ap~~~W 423 (969)
+.--...+-.|++.....-+...-+++ -..|.-. +++.+. ...|+++..++-.---.|.+.+ -.+++-
T Consensus 289 vRv~la~l~Nll~~~~~~~~~~~~~~~----~~~~~l~----~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDe 360 (480)
T 1ho8_A 289 SRLCISIILQCCSTRVKQHKKVIKQLL----LLGNALP----TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDE 360 (480)
T ss_dssp HHHHHHHHHHTTSSSSTTHHHHHHHHH----HHHCHHH----HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHhcccchhhhhHHHHHH----HHccchH----HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 222222333344322100000000000 0001111 222222 2467777666544333333322 123444
Q ss_pred HH-HHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCC---------CCchhHHHHHHH
Q 002083 424 FI-QTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEP---------KLPSVFLQVICW 493 (969)
Q Consensus 424 ~I-d~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~---------~~~e~l~~~i~W 493 (969)
|. ++....++=++-+-.+..|..= ...|.+ . .-.++..|+++|+.. ..+. .++++|+
T Consensus 361 Y~~El~sG~L~WSP~H~se~FW~EN----a~kf~e----~----~~~llk~L~~iL~~~~~~~~~~~s~d~~-~laVAc~ 427 (480)
T 1ho8_A 361 YVAELDSKLLCWSPPHVDNGFWSDN----IDEFKK----D----NYKIFRQLIELLQAKVRNGDVNAKQEKI-IIQVALN 427 (480)
T ss_dssp HHHHHHHTCCCCCGGGGCHHHHHHH----SGGGSS----G----GGHHHHHHHHHHHHHHHTTCCCSHHHHH-HHHHHHH
T ss_pred HHHHHhcCCcccCCCccchhHHHHH----HHHHHh----c----chHHHHHHHHHHhhhccccccccCCCcc-eEEeecc
Confidence 44 4444444444444455555431 122211 1 123566777777631 2233 4678899
Q ss_pred HhccccCCCCCCChHHHHHHHH-H--HHhh-cCCcHHHHHHHHHHHHHHHHH
Q 002083 494 VLGEYGTADGKVSASYITGKLC-D--VAEA-YSNDETIKAYAITALMKIYAF 541 (969)
Q Consensus 494 ILGEY~~~~~~~~~~~Il~~L~-~--~~~~-~~e~~~Vk~~ILtAl~KL~~~ 541 (969)
=||||....+ ....+++.+- + +++- ..++++||-..|.|+-|+..+
T Consensus 428 Digefvr~~P--~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 428 DITHVVELLP--ESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHCT--THHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHCc--chhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999987532 2344554431 1 1111 146789999999999998764
No 95
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.69 E-value=0.43 Score=57.14 Aligned_cols=236 Identities=11% Similarity=0.231 Sum_probs=141.1
Q ss_pred HHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc--cc-hH------hhHHHHHHHhcCCCChHH
Q 002083 91 RTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN--EE-TI------PAVLPQVVELLGHSKEAV 161 (969)
Q Consensus 91 RlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~--~e-l~------~~l~~~V~~lL~d~~pyV 161 (969)
.+|--++-.+.. ++|-+-++++. |++.++++|-.|++.|..+.. ++ .- +.-++.+..+|.|++..|
T Consensus 108 ~~~~~~~d~f~~-~~~~i~~Ll~l----L~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~i 182 (651)
T 3grl_A 108 DLGSQFTEIFIK-QQENVTLLLSL----LEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVI 182 (651)
T ss_dssp CHHHHHHHHHHH-STHHHHHHHHH----TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHH
T ss_pred HHHHHHHHHHHc-CCccHHHHHHH----hcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHH
Confidence 345444444444 34545455555 468899999999888877652 22 22 234567889999999999
Q ss_pred HHHHHHHHHHHHhhCCcchh-----hHHHHHHHhhcCCCh----hHHHHHHHHHHHhhhhCchh---hHH--HHHHHHHH
Q 002083 162 RRKAIMALHRFYQKSPSSVQ-----HLVSNFRKRLCDNDP----GVMGATLCPLFDLITVDVNS---YKD--LVISFVSI 227 (969)
Q Consensus 162 RKkA~lal~kiy~~~Pe~v~-----~l~~~l~~lL~D~D~----~Vv~aAl~~L~ei~~~~p~~---~~~--Lv~~lv~i 227 (969)
|-.|++.+..+-+.+++.-+ ..++.+-.++.+... .|+.-++.++..+++.|+.+ |+. .++.+..+
T Consensus 183 RneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~L 262 (651)
T 3grl_A 183 RNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPW 262 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999988533 346666666655433 56777888899999888742 332 33444444
Q ss_pred HHHHHhccCCCCcCCCCCCChhHHHH------HHHHHHHhCCC-Ch-----HHHhh-----hHHHHHHhHhccCCCCCCC
Q 002083 228 LKQVAERRLPKSYDYHQMPAPFIQIR------LLKILALLGSG-DK-----QASEN-----MYTVVGDIFRKCDSSSNIG 290 (969)
Q Consensus 228 Lk~l~~~~lp~~y~y~~v~~PWlQik------LLklL~~l~~~-d~-----~~se~-----l~~iL~~iL~~~~~~~Ni~ 290 (969)
|+ .+.+ ...|..-+ +|.+++.+... .+ ..... +...|-+++. ..++.
T Consensus 263 L~------~~~~------~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~----~~~~p 326 (651)
T 3grl_A 263 FE------VGDE------NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM----ATGVP 326 (651)
T ss_dssp GC------CCSC------SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT----CSSCC
T ss_pred hC------CCcc------ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc----cCCCC
Confidence 32 1111 12454333 34455555443 21 11112 2233334443 23444
Q ss_pred chHHHHHHHHHHhcC-CCHHHHHH--------------HHHHHHHHhcC-CChhHHHHHHHHHHHHHhhChhH
Q 002083 291 NAVLYECICCVSSIY-ANPKLIES--------------AADVIARFLKS-DSHNLKYMGIDALGRLIKTSPEI 347 (969)
Q Consensus 291 ~AVlyEaik~I~~l~-~~~~ll~~--------------ai~~L~~fL~s-~d~NlrYvaL~~L~~I~~~~P~l 347 (969)
..|.-+|++++..+. .|+..-+. .+..|..++.+ ...++|+.++.++......|++.
T Consensus 327 ~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~ 399 (651)
T 3grl_A 327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKG 399 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHH
Confidence 578888888886643 23322221 22224445555 34788999999888888888643
No 96
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.21 E-value=1.5 Score=50.65 Aligned_cols=161 Identities=12% Similarity=0.223 Sum_probs=106.3
Q ss_pred CChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHH
Q 002083 325 DSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKT 404 (969)
Q Consensus 325 ~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~ 404 (969)
.+...|-++-+.|.+..+..|++-.+-...++++.+|.|..||..|+.=|..+|..+++..|++-|...+.. |+..-.
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqt--dd~~E~ 117 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQT--DDSAEF 117 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTC--CCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhc--cchHHH
Confidence 347777777788888888889988888888899999999999999999999999999999999999888863 433333
Q ss_pred HHHHH-HHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcc---cCCCccccchhHHHHHHHHHHHHhCC
Q 002083 405 EIASR-CVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEG---FGEDDDNADSQLRSSAVESYLRIIGE 480 (969)
Q Consensus 405 eli~~-I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~---~g~~~~~~~p~lr~~av~~l~~lL~d 480 (969)
++|+. +..+... +..--+..|+.-+..+.+.+.+. ++..|... ++.+. ...++..+++..+.+.|++
T Consensus 118 ~~V~~sL~sllk~---Dpk~tl~~lf~~i~~~~e~~Rer----~lkFi~~kl~~l~~~~--l~~E~E~~i~~~ikK~L~D 188 (507)
T 3u0r_A 118 NLVNNALLSIFKM---DAKGTLGGLFSQILQGEDIVRER----AIKFLSTKLKTLPDEV--LTKEVEELILTESKKVLED 188 (507)
T ss_dssp HHHHHHHHHHHHH---CHHHHHHHHHHHHHHSCHHHHHH----HHHHHHHHGGGSCTTT--SCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc---ChHHHHHHHHHHHcccchHHHHH----HHHHHHHHHhhcchhh--ccHHHHHHHHHHHHHHhcc
Confidence 34432 2333322 45555555555554444444444 33444332 22222 2367778888888888877
Q ss_pred CCCchhHHHHHHHHhccc
Q 002083 481 PKLPSVFLQVICWVLGEY 498 (969)
Q Consensus 481 ~~~~e~l~~~i~WILGEY 498 (969)
....+ + ..+.=+++.+
T Consensus 189 VT~~E-F-~L~m~lL~~l 204 (507)
T 3u0r_A 189 VTGEE-F-VLFMKILSGL 204 (507)
T ss_dssp CCHHH-H-HHHHHHHHTS
T ss_pred ccHHH-H-HHHHHHHHhc
Confidence 65433 2 2333445444
No 97
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.16 E-value=1.6 Score=49.24 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcc---cccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHH
Q 002083 126 IVCAALNAVCKL---INEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGAT 202 (969)
Q Consensus 126 vralALr~Ls~I---~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aA 202 (969)
.+...|+-+-.+ .+|++.+.+++.|.....+++..|||-.+--+...+..+++.+...++.|..+|.|.|+.|+=.+
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~ 120 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKA 120 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 455556655553 46788888888888888888888888888888888888888888888888888888888886444
Q ss_pred H
Q 002083 203 L 203 (969)
Q Consensus 203 l 203 (969)
+
T Consensus 121 I 121 (386)
T 3o2t_A 121 I 121 (386)
T ss_dssp H
T ss_pred H
Confidence 4
No 98
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.95 E-value=0.49 Score=60.39 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=100.3
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHH-HHcCCCCcchHHHH-HHhhcCC----CcchhHHHHHHHHhhhcc--------Cc
Q 002083 40 LKRRISEPDIPKRKMKEYIIRLVYV-EMLGHDASFGYIHA-VKMTHDD----NLVLKRTGYLAVTLFLNE--------DH 105 (969)
Q Consensus 40 iR~~f~~~~~~~~~~ke~l~KLiyl-~mlG~Dvsf~~~~v-Ikl~sS~----~~~~KRlgYLals~~~~~--------~~ 105 (969)
|++.|.+.+++..+ +..-+... ++. +. +.-.++. ..++.++ +-.+++.++|++..+.+. .+
T Consensus 361 i~~~i~~~~l~~~e---a~~~l~~~~~~~-~P-t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~ 435 (1056)
T 1lsh_A 361 LKRTLASEQLTSAE---ATQIVASTLSNQ-QA-TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD 435 (1056)
T ss_dssp HHHHHHTTCSCHHH---HHHHHHHHHHTC-CC-CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG
T ss_pred HHHHHHcCCCCHHH---HHHHHHHhhccC-CC-CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 46666666665432 22222221 222 22 2223333 3344443 344667788888666542 34
Q ss_pred hHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcC-------CCChHHHHHHHHHHHHHHhhCCc
Q 002083 106 DLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLG-------HSKEAVRRKAIMALHRFYQKSPS 178 (969)
Q Consensus 106 dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~-------d~~pyVRKkA~lal~kiy~~~Pe 178 (969)
+++--+.+.+.+-+...+...+-++|++|+|+..++.++.+ .+++. +....||..|+.||.++-..+|+
T Consensus 436 ~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l----~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~ 511 (1056)
T 1lsh_A 436 ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKI----QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR 511 (1056)
T ss_dssp GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHH----HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHH----HHhhcCccccccccchHHHHHHHHHHHHhhhhchH
Confidence 55666777788888888899999999999999999766544 44442 22457999999999999988888
Q ss_pred chhhHHHHHHHhh--cCCChhHHHHHHHHHHH
Q 002083 179 SVQHLVSNFRKRL--CDNDPGVMGATLCPLFD 208 (969)
Q Consensus 179 ~v~~l~~~l~~lL--~D~D~~Vv~aAl~~L~e 208 (969)
.+.. .+...+ .+.++.|..+|+.+|++
T Consensus 512 ~v~~---il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 512 KVQE---IVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp HHHH---HHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHhcCCCCChHHHHHHHHHHHH
Confidence 7654 233334 34688888888777654
No 99
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.75 E-value=0.4 Score=50.55 Aligned_cols=155 Identities=14% Similarity=0.060 Sum_probs=90.7
Q ss_pred HHHhhhcCccH--HHHHHHHHHHHcccc--cc----hH-hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh---
Q 002083 114 TIQKDLKSDNY--LIVCAALNAVCKLIN--EE----TI-PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ--- 181 (969)
Q Consensus 114 tLqKDL~s~N~--~vralALr~Ls~I~~--~e----l~-~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~--- 181 (969)
.+.+-|.++++ .++..|..++.++.. ++ ++ .-.+|.+.++|.+.++.||..|+-||..+-..+++.-.
T Consensus 12 ~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~ 91 (233)
T 3tt9_A 12 RAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVA 91 (233)
T ss_dssp HHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44455555555 444444444444331 11 11 12468889999999999999999999999876665322
Q ss_pred --hHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhCchh---hHHHHHHHHHHHHHHHhccCCCCcC-CCCCCChhHHHHH
Q 002083 182 --HLVSNFRKRLC-DNDPGVMGATLCPLFDLITVDVNS---YKDLVISFVSILKQVAERRLPKSYD-YHQMPAPFIQIRL 254 (969)
Q Consensus 182 --~l~~~l~~lL~-D~D~~Vv~aAl~~L~ei~~~~p~~---~~~Lv~~lv~iLk~l~~~~lp~~y~-y~~v~~PWlQikL 254 (969)
..++.|.++|. ..+..+.-.|..+|+.+...+... .+.-+|.+++++..-..+....++. .++..++-.+...
T Consensus 92 ~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na 171 (233)
T 3tt9_A 92 ELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNV 171 (233)
T ss_dssp HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHH
T ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHH
Confidence 36788888887 478899988888888886543211 1112233333221111110000110 1223456677778
Q ss_pred HHHHHHhCCCChHH
Q 002083 255 LKILALLGSGDKQA 268 (969)
Q Consensus 255 LklL~~l~~~d~~~ 268 (969)
--.|..+...+++.
T Consensus 172 ~~~L~nLss~~~~~ 185 (233)
T 3tt9_A 172 TGCLRNMSSAGADG 185 (233)
T ss_dssp HHHHHHHTTSCHHH
T ss_pred HHHHHHHhcCCHHH
Confidence 88888888766543
No 100
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.21 E-value=3.2 Score=44.30 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcc---cccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHH
Q 002083 126 IVCAALNAVCKL---INEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGAT 202 (969)
Q Consensus 126 vralALr~Ls~I---~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aA 202 (969)
.+...|+.+-.+ .+|++.+.+++.+.....+++..|||--+-=+...++.+++.+...++.+..+|.|.|+.|+=.+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 666666655442 36889999999999998899999999999999999999999999999999999999999998766
Q ss_pred HHHH
Q 002083 203 LCPL 206 (969)
Q Consensus 203 l~~L 206 (969)
+...
T Consensus 111 I~~~ 114 (257)
T 3gs3_A 111 IQAC 114 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.99 E-value=3.4 Score=43.37 Aligned_cols=163 Identities=11% Similarity=0.094 Sum_probs=106.7
Q ss_pred CcchHHHHHHhhcCCCc--chhHHHHHHHHhhhccCchHH--H---HHHHHHHhhhcCccHHHHHHHHHHHHcccc--cc
Q 002083 71 ASFGYIHAVKMTHDDNL--VLKRTGYLAVTLFLNEDHDLI--I---LIVNTIQKDLKSDNYLIVCAALNAVCKLIN--EE 141 (969)
Q Consensus 71 vsf~~~~vIkl~sS~~~--~~KRlgYLals~~~~~~~dll--l---L~iNtLqKDL~s~N~~vralALr~Ls~I~~--~e 141 (969)
+......+|+++++++. ..+..+--++..+...+++-- + =.|..|.+-|.++++.++..|..+|.+|.. ++
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 45667788999999988 666655556666554444322 2 146778888899999999888888887753 22
Q ss_pred hHh-----hHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhCC---cchhhHHHHHHHhhc-------C---------CCh
Q 002083 142 TIP-----AVLPQVVELLG-HSKEAVRRKAIMALHRFYQKSP---SSVQHLVSNFRKRLC-------D---------NDP 196 (969)
Q Consensus 142 l~~-----~l~~~V~~lL~-d~~pyVRKkA~lal~kiy~~~P---e~v~~l~~~l~~lL~-------D---------~D~ 196 (969)
--. -.+|.+.++|. +.++.+|+.|+-+|..+-..+. .+++.-++.|..+|. | .|+
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 211 24678889997 5789999999999998865332 122223344433331 1 267
Q ss_pred hHHHHHHHHHHHhhhhCch------hhHHHHHHHHHHHHHHHh
Q 002083 197 GVMGATLCPLFDLITVDVN------SYKDLVISFVSILKQVAE 233 (969)
Q Consensus 197 ~Vv~aAl~~L~ei~~~~p~------~~~~Lv~~lv~iLk~l~~ 233 (969)
.|..+|...|..+...+++ .+..+++.++.+|+..+.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 8888888888888654432 123467788888876543
No 102
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.72 E-value=21 Score=45.52 Aligned_cols=174 Identities=14% Similarity=0.066 Sum_probs=97.8
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc-------cchHhhHHH
Q 002083 76 IHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN-------EETIPAVLP 148 (969)
Q Consensus 76 ~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~-------~el~~~l~~ 148 (969)
-.++..+-+++-..|+-+.-++..+ ..+++-...+...|.+ +.++.+|-.|+.+|-+.+. ++-...+-.
T Consensus 31 e~lv~~ly~p~~~~r~qA~~~L~q~-q~sp~aw~~~~~iL~~---s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~ 106 (1073)
T 3gjx_A 31 DNVVNCLYHGEGAQQRMAQEVLTHL-KEHPDAWTRVDTILEF---SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKK 106 (1073)
T ss_dssp HHHHHTTTCSSHHHHHHHHHHHHTS-SCCSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH-HcCchHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 3355666666667788888888765 4466655444444433 4688999999988876544 222233333
Q ss_pred HHHHhc----CC-----CChHHHHHHHHHHHHHHhh-CCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh---C--
Q 002083 149 QVVELL----GH-----SKEAVRRKAIMALHRFYQK-SPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITV---D-- 213 (969)
Q Consensus 149 ~V~~lL----~d-----~~pyVRKkA~lal~kiy~~-~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~---~-- 213 (969)
.+...+ .+ ..+.++.|.+.++..+++. +|+.=+.+++.+..++..+ +...-..+.+|..+..+ .
T Consensus 107 ~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~ 185 (1073)
T 3gjx_A 107 YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSS 185 (1073)
T ss_dssp HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccc
Confidence 344333 22 2467788999999999886 5665555666666666433 32222333333332221 1
Q ss_pred --c---------hhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCC
Q 002083 214 --V---------NSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSG 264 (969)
Q Consensus 214 --p---------~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~ 264 (969)
. +..+..++.++.++.++++.. .++=+-...|+.|..|..+
T Consensus 186 ~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~----------~~~~lv~~~L~~L~~~~sW 237 (1073)
T 3gjx_A 186 GQITQVKAKHLKDSMCNEFSQIFQLCQFVMENS----------QNAPLVHATLETLLRFLNW 237 (1073)
T ss_dssp HHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHTTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------CCHHHHHHHHHHHHHHHHh
Confidence 0 012223466777777766431 1333445567777777665
No 103
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.45 E-value=9.2 Score=49.36 Aligned_cols=253 Identities=11% Similarity=0.123 Sum_probs=126.8
Q ss_pred cHHHHHHHHHHHHccccc-chHhhHHHHHHHhc-CCCChHHHHHHHHHHHHHHhhC-----CcchhhHHHHHHHhhc---
Q 002083 123 NYLIVCAALNAVCKLINE-ETIPAVLPQVVELL-GHSKEAVRRKAIMALHRFYQKS-----PSSVQHLVSNFRKRLC--- 192 (969)
Q Consensus 123 N~~vralALr~Ls~I~~~-el~~~l~~~V~~lL-~d~~pyVRKkA~lal~kiy~~~-----Pe~v~~l~~~l~~lL~--- 192 (969)
++-.|..|-..|-.+... +... .....+. .+.+++||--|+..+-+..+.+ ++....+-+.+...+.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~~~~---~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~ 102 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCPICV---PCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGT 102 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHH---HHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHHhCchHHH---HHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhc
Confidence 566777777777665432 2222 2222233 4567889999888888876653 2222233344444432
Q ss_pred ----CCChhHHHHHHHHHHHhhhhC-chhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC-----
Q 002083 193 ----DNDPGVMGATLCPLFDLITVD-VNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG----- 262 (969)
Q Consensus 193 ----D~D~~Vv~aAl~~L~ei~~~~-p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~----- 262 (969)
+..+.|......++.+|++.+ |+.|..+++.+++.+.. ++-.....|++|..++
T Consensus 103 ~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~----------------~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 103 LNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ----------------GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp CCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT----------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC----------------CHHHHHHHHHHHHHHHHHHcc
Confidence 134555554444556666544 56787888777776642 1211222333333321
Q ss_pred CCC--hHH-----------HhhhHHHHHHhHhcc-------CC-CCCC-----CchHHHHHHHHHHhc---CCCHHHHH-
Q 002083 263 SGD--KQA-----------SENMYTVVGDIFRKC-------DS-SSNI-----GNAVLYECICCVSSI---YANPKLIE- 312 (969)
Q Consensus 263 ~~d--~~~-----------se~l~~iL~~iL~~~-------~~-~~Ni-----~~AVlyEaik~I~~l---~~~~~ll~- 312 (969)
..+ ... ...++.++..+++.. .. ..|. ...++..+.+|+..+ .+-....+
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~ 246 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAE 246 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhc
Confidence 111 000 012233333444321 00 0000 123555555655433 22111111
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhC--hhHHHH---hH-----Hhhcccc--------CCCchHHHHHHHH
Q 002083 313 --SAADVIARFLKSDSHNLKYMGIDALGRLIKTS--PEIAEQ---HQ-----LAVIDCL--------EDPDDTLKRKTFE 372 (969)
Q Consensus 313 --~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~--P~l~~~---h~-----~~I~~cL--------~D~D~sIR~kaLd 372 (969)
..+..+..++. ++.+|-.++++|..|+... |+-... +. ..++..+ +|.|..+.++--+
T Consensus 247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ 324 (1204)
T 3a6p_A 247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQ 324 (1204)
T ss_dssp TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHH
Confidence 13444555554 5789999999999999866 321111 10 1222221 3335566666666
Q ss_pred Hhhccc--------------CCCcHHHHHHHHHHHHhh
Q 002083 373 LLYKMT--------------KSSNVEVIVDRMIDYMIS 396 (969)
Q Consensus 373 LL~~L~--------------n~~Nv~~IV~eLl~yl~~ 396 (969)
++..++ ...++..+++-|+.++.+
T Consensus 325 ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~ 362 (1204)
T 3a6p_A 325 VLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTH 362 (1204)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhC
Confidence 666654 566778888888887764
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.05 E-value=0.77 Score=48.44 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=57.1
Q ss_pred CccHHHH---HHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcc---hhhHHHHHHHhhcCC
Q 002083 121 SDNYLIV---CAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSS---VQHLVSNFRKRLCDN 194 (969)
Q Consensus 121 s~N~~vr---alALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~---v~~l~~~l~~lL~D~ 194 (969)
+.+--|| +.|++-+|.-..++ .+++.+.+-+.|.++.|||.|+.++...... |.. ...+++.+..+..|.
T Consensus 115 D~~WrVre~lA~a~~~~~~~~~pe---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp~~ll~iL~~L~~D~ 190 (240)
T 3l9t_A 115 DNNWRVQEVLAKAFDEFCKKIEYK---KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENPNEAIRRIADLKEDV 190 (240)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTT---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCHHHHHHHHHTTTTCS
T ss_pred CCCccHHHHHHHHHHHHHHhcCHH---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCHHHHHHHHHHhcCCh
Confidence 4554444 44444444322333 2445666777788888888887776431111 211 123566666777777
Q ss_pred ChhHHHHHHHHHHHhhhhCchhhHHHH
Q 002083 195 DPGVMGATLCPLFDLITVDVNSYKDLV 221 (969)
Q Consensus 195 D~~Vv~aAl~~L~ei~~~~p~~~~~Lv 221 (969)
+-.|.-+.-..|.++.+.+|+..+.++
T Consensus 191 s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 191 SEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 777777777777788887777555544
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.04 E-value=2.2 Score=45.89 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=100.9
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhH----HHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhH
Q 002083 143 IPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHL----VSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK 218 (969)
Q Consensus 143 ~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l----~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~ 218 (969)
.+.+-+++...|.|++.--|-+|+-.|.+....+|+.+-.. +.-+.-.++|+|+.|...++-.|..+
T Consensus 44 ~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l--------- 114 (266)
T 2of3_A 44 GNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVI--------- 114 (266)
T ss_dssp HTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH---------
T ss_pred HHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------
Confidence 33445567788888888888899999999888888654433 33334457899999888776554433
Q ss_pred HHHHHHHHHHHHHHhccCCCCcCCCCCCChhH-HHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHH
Q 002083 219 DLVISFVSILKQVAERRLPKSYDYHQMPAPFI-QIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYEC 297 (969)
Q Consensus 219 ~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWl-QikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEa 297 (969)
+..|.+. +|.+ .+.- -+-+=-++.++|.......+.+ .++
T Consensus 115 ------~~~l~~~-------~y~~----~~~ea~~~lP~LveKlGd~k~~vR~~~----------------------r~i 155 (266)
T 2of3_A 115 ------VELIRDT-------ETPM----SQEEVSAFVPYLLLKTGEAKDNMRTSV----------------------RDI 155 (266)
T ss_dssp ------HHHHHHT-------TCCC----CHHHHHHHHHHHHHGGGCSSHHHHHHH----------------------HHH
T ss_pred ------HHHHHhc-------cccc----hHHHHHHHHHHHHHHhCCChHHHHHHH----------------------HHH
Confidence 2333221 1111 1110 0111111222222111111111 122
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhH---HhhccccCCCchHHHHHHHHHh
Q 002083 298 ICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQ---LAVIDCLEDPDDTLKRKTFELL 374 (969)
Q Consensus 298 ik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~---~~I~~cL~D~D~sIR~kaLdLL 374 (969)
++.+..+++...+. ..+..=+.+++.-.|--.|..+..++..+.--...+. ..|..++.|+|..+|..|+..+
T Consensus 156 l~~l~~v~~~~~v~----~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~l 231 (266)
T 2of3_A 156 VNVLSDVVGPLKMT----PMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVL 231 (266)
T ss_dssp HHHHHHHHCHHHHH----HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHH----HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 22233333322222 3333444666677777777777777766532234456 7789999999999999999887
Q ss_pred h
Q 002083 375 Y 375 (969)
Q Consensus 375 ~ 375 (969)
.
T Consensus 232 v 232 (266)
T 2of3_A 232 V 232 (266)
T ss_dssp H
T ss_pred H
Confidence 6
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.04 E-value=0.71 Score=48.72 Aligned_cols=100 Identities=21% Similarity=0.163 Sum_probs=63.4
Q ss_pred hcCCCcchhHHHHHHHHhhhc-cCchHHHHHHHHHHhhhcCccHHHHHHHHHHH---Hcccc-cchHhhHHHHHHHhcCC
Q 002083 82 THDDNLVLKRTGYLAVTLFLN-EDHDLIILIVNTIQKDLKSDNYLIVCAALNAV---CKLIN-EETIPAVLPQVVELLGH 156 (969)
Q Consensus 82 ~sS~~~~~KRlgYLals~~~~-~~~dlllL~iNtLqKDL~s~N~~vralALr~L---s~I~~-~el~~~l~~~V~~lL~d 156 (969)
...+++..+-+.-.++..++. .++|. +...+.+=++|+|+-+|-+|+-.+ |.... ..--+.+++.|..+..|
T Consensus 113 a~D~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D 189 (240)
T 3l9t_A 113 SKDNNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKED 189 (240)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTC
T ss_pred CCCCCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCC
Confidence 334666555555555555543 45553 334667777788888888877765 22211 12223466677777778
Q ss_pred CChHHHHHHHHHHHHHHhhCCcchhhHH
Q 002083 157 SKEAVRRKAIMALHRFYQKSPSSVQHLV 184 (969)
Q Consensus 157 ~~pyVRKkA~lal~kiy~~~Pe~v~~l~ 184 (969)
++.||||.-+-+|--+.+.+|+.+..++
T Consensus 190 ~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 190 VSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 8888888888888888888888766543
No 107
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.17 E-value=32 Score=43.44 Aligned_cols=251 Identities=11% Similarity=0.183 Sum_probs=151.1
Q ss_pred HHHHHHHhhhcCcc-HHHHHHHHHHHHccc--ccchHh---hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-Ccchhh
Q 002083 110 LIVNTIQKDLKSDN-YLIVCAALNAVCKLI--NEETIP---AVLPQVVELLGHSKEAVRRKAIMALHRFYQKS-PSSVQH 182 (969)
Q Consensus 110 L~iNtLqKDL~s~N-~~vralALr~Ls~I~--~~el~~---~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~-Pe~v~~ 182 (969)
=++..++|-+.+.+ +.--++++..||.-. .+.+-+ .+++.+..++.|+...||+.|-.|+.-++... |+.+..
T Consensus 54 ~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~ 133 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKA 133 (986)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34556666666653 333334555555322 112212 34688999999999999999999999999865 567877
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHh
Q 002083 183 LVSNFRKRLCDN-DPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 183 l~~~l~~lL~D~-D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l 261 (969)
+++.+.+.|... .=....+|+.++-.+....|...-..+|.++-++...+ ||. -|=....-.+.+..+
T Consensus 134 ~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~d~----k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 134 LLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM-------WDT----KKEVKAAATAAMTKA 202 (986)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-------TCS----SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhc-------ccC----cHHHHHHHHHHHHHH
Confidence 888888877543 34566677888887776666655445566666665543 111 123344445555555
Q ss_pred CC-CChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCChhHHH---HH
Q 002083 262 GS-GDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA----NPKLIESAADVIARFLKSDSHNLKY---MG 333 (969)
Q Consensus 262 ~~-~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~----~~~ll~~ai~~L~~fL~s~d~NlrY---va 333 (969)
|. -+....+.+++.|-+++.+- .-+-|||..+..-.- ....+...+-.|.+=|......++- +.
T Consensus 203 ~~~~~n~d~~~~~~~~~~~~~~p--------~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~ 274 (986)
T 2iw3_A 203 TETVDNKDIERFIPSLIQCIADP--------TEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVI 274 (986)
T ss_dssp GGGCCCTTTGGGHHHHHHHHHCT--------THHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HhcCCCcchhhhHHHHHHHhcCh--------hhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEE
Confidence 43 12222355667777777642 336788887754321 2334455566667777666655553 44
Q ss_pred HHHHHHHHhhChhHHHHhHHh-------hccccCCCc-hHHHHHHHHHhhcccCC
Q 002083 334 IDALGRLIKTSPEIAEQHQLA-------VIDCLEDPD-DTLKRKTFELLYKMTKS 380 (969)
Q Consensus 334 L~~L~~I~~~~P~l~~~h~~~-------I~~cL~D~D-~sIR~kaLdLL~~L~n~ 380 (969)
+++|.+|+ .+|..+..+... +.+-..||. ..+-.+|++.|.+..+.
T Consensus 275 ~~n~~~lv-~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 275 IDNMCKLV-EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHTTC-CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred Ecchhhhc-CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 55666665 357666665544 344444553 35667788888776443
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=90.58 E-value=1.9 Score=52.14 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-----hHH-HHHHHhhcCCChhHHHHHHHHHHHhhhhC-chhhHH---
Q 002083 150 VVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-----HLV-SNFRKRLCDNDPGVMGATLCPLFDLITVD-VNSYKD--- 219 (969)
Q Consensus 150 V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-----~l~-~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~-p~~~~~--- 219 (969)
+.+.|.++++-+|..|+.|+..+.. +|+..+ ..+ ..+..+|.|.+..|..+|..+|-.++.+. ++.+..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~ 117 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYR 117 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHH
Confidence 3445788888899999999888885 665432 234 34567889999999999988887777654 232222
Q ss_pred --HHHHHHHHHHHH
Q 002083 220 --LVISFVSILKQV 231 (969)
Q Consensus 220 --Lv~~lv~iLk~l 231 (969)
..+.+...|+++
T Consensus 118 ~~il~~L~~~l~~~ 131 (684)
T 4gmo_A 118 LDVLTAIEHAAKAV 131 (684)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHhh
Confidence 345555665554
No 109
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.19 E-value=64 Score=40.70 Aligned_cols=208 Identities=12% Similarity=0.176 Sum_probs=138.7
Q ss_pred HHHHHHhhhcCccHHHHHH---HHHHHHcccccchHhhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhCCcchh----h
Q 002083 111 IVNTIQKDLKSDNYLIVCA---ALNAVCKLINEETIPAVLPQVVELLGHS-KEAVRRKAIMALHRFYQKSPSSVQ----H 182 (969)
Q Consensus 111 ~iNtLqKDL~s~N~~vral---ALr~Ls~I~~~el~~~l~~~V~~lL~d~-~pyVRKkA~lal~kiy~~~Pe~v~----~ 182 (969)
..+.+..-+.|.+..||.. |+.++....+++-+..++|.+...|.+. +.-.+-.|+-++-++....|+.+. +
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 3567777778888888865 5566777889988899999999999765 678888899999999988898764 6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhh--CchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHH
Q 002083 183 LVSNFRKRLCDNDPGVMGATLCPLFDLITV--DVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILAL 260 (969)
Q Consensus 183 l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~--~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~ 260 (969)
+++.+.+++-|..+-|.-+|...+..+|.. |.+ ..+++|.+++-+. +|=---+.++.|..
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~-----------------~p~~~~~~~~~l~~ 237 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIA-----------------DPTEVPETVHLLGA 237 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHH-----------------CTTHHHHHHHHHTT
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhc-----------------ChhhhHHHHHHhhc
Confidence 788888999999999999988888777753 332 3456677776654 23223345555543
Q ss_pred hCC---CChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHH---HhcCCCHHHHHHHHHH----HHHHhcC-CChhH
Q 002083 261 LGS---GDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCV---SSIYANPKLIESAADV----IARFLKS-DSHNL 329 (969)
Q Consensus 261 l~~---~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I---~~l~~~~~ll~~ai~~----L~~fL~s-~d~Nl 329 (969)
-.. -+...-..|.++|..-|... ..++-..++-.+ +++-.+|......+.. |.+.... .+|+.
T Consensus 238 ~tfv~~v~~~~l~~~~p~l~r~l~~~------~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 238 TTFVAEVTPATLSIMVPLLSRGLNER------ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEA 311 (986)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHTSS------SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHH
T ss_pred CeeEeeecchhHHHHHHHHHhhhccC------cchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHH
Confidence 221 12222334566776666521 135555554443 4455666554433332 3333333 67999
Q ss_pred HHHHHHHHHHHHh
Q 002083 330 KYMGIDALGRLIK 342 (969)
Q Consensus 330 rYvaL~~L~~I~~ 342 (969)
|-++-+++..|.+
T Consensus 312 r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 312 REVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877754
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.01 E-value=0.35 Score=51.30 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=94.3
Q ss_pred hhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCCh
Q 002083 117 KDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDP 196 (969)
Q Consensus 117 KDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~ 196 (969)
.=+.|+++.+|..|.+.+. ++ .+..++.|+++.||..|+..+ .+ +.+..++.|.|+
T Consensus 57 ~ll~d~~~~VR~~AA~~l~----~~-------~l~~L~~D~~~~VR~~aA~~L------~~-------~~L~~ll~D~d~ 112 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP----VE-------ALTPLIRDSDEVVRRAVAYRL------PR-------EQLSALMFDEDR 112 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC----GG-------GGGGGTTCSSHHHHHHHHTTS------CS-------GGGGGTTTCSCH
T ss_pred HHhcCCCHHHHHHHHHhCC----HH-------HHHHHccCcCHHHHHHHHHHC------CH-------HHHHHHHcCCCH
Confidence 3358888999988888542 11 256778899999999888642 22 234567888999
Q ss_pred hHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHH
Q 002083 197 GVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVV 276 (969)
Q Consensus 197 ~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL 276 (969)
.|..++...+ .+.. |..+.. =++++.+..+.+ .+. + +.+
T Consensus 113 ~VR~~aA~~l------~~~~-----------L~~L~~-----------D~d~~VR~~aA~---~l~---~-------~~l 151 (244)
T 1lrv_A 113 EVRITVADRL------PLEQ-----------LEQMAA-----------DRDYLVRAYVVQ---RIP---P-------GRL 151 (244)
T ss_dssp HHHHHHHHHS------CTGG-----------GGGGTT-----------CSSHHHHHHHHH---HSC---G-------GGG
T ss_pred HHHHHHHHhC------CHHH-----------HHHHHc-----------CCCHHHHHHHHH---hcC---H-------HHH
Confidence 8887765421 1111 111110 135566555554 111 0 112
Q ss_pred HHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhc
Q 002083 277 GDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVI 356 (969)
Q Consensus 277 ~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~ 356 (969)
..+++ | . ...|..+++..+ . + ..+..++.+.+.++|..+...+ . ...+.
T Consensus 152 ~~l~~--D--~--d~~VR~~aa~~l---~--~-------~ll~~ll~D~d~~VR~aaa~~l------~-------~~~L~ 200 (244)
T 1lrv_A 152 FRFMR--D--E--DRQVRKLVAKRL---P--E-------ESLGLMTQDPEPEVRRIVASRL------R-------GDDLL 200 (244)
T ss_dssp GGTTT--C--S--CHHHHHHHHHHS---C--G-------GGGGGSTTCSSHHHHHHHHHHC------C-------GGGGG
T ss_pred HHHHc--C--C--CHHHHHHHHHcC---C--H-------HHHHHHHcCCCHHHHHHHHHhC------C-------HHHHH
Confidence 12222 1 1 235666665541 1 1 2344567778888998888763 1 13566
Q ss_pred cccCCCchHHHHHHHHHh
Q 002083 357 DCLEDPDDTLKRKTFELL 374 (969)
Q Consensus 357 ~cL~D~D~sIR~kaLdLL 374 (969)
.++.|+|..||..+.+-+
T Consensus 201 ~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 201 ELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp GGGGCSSHHHHHHHHHHS
T ss_pred HHHcCCCHHHHHHHHHcC
Confidence 778899999999887764
No 111
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.42 E-value=73 Score=40.51 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChhhHHHHH
Q 002083 328 NLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIA 407 (969)
Q Consensus 328 NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~~k~eli 407 (969)
.+|-.++.+|.++...+|+.+.+-...|+.= ...+..||..|+.+|+. |++. ..++..|..++..-.+.+++.-+.
T Consensus 493 rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n-~~e~~EvRiaA~~~Lm~-t~P~--~~~l~~ia~~l~~E~~~QV~sfv~ 568 (1056)
T 1lsh_A 493 RVQAEAIMALRNIAKRDPRKVQEIVLPIFLN-VAIKSELRIRSCIVFFE-SKPS--VALVSMVAVRLRREPNLQVASFVY 568 (1056)
T ss_dssp HHHHHHHHTTTTGGGTCHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHH-TCCC--HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHhcC-CCCChHHHHHHHHHHHH-HCcC--HHHHHHHHHHHhhCchHHHHHHHH
Confidence 4556667777777777777766544444421 23357888888888875 4454 456677777776434566777777
Q ss_pred HHHHHHhhhcCCc
Q 002083 408 SRCVELAEQFAPS 420 (969)
Q Consensus 408 ~~I~~laekyap~ 420 (969)
..|-.+++.-.|.
T Consensus 569 S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 569 SQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHTTCCSGG
T ss_pred HHHHHHHhcCCcc
Confidence 7777777654443
No 112
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=82.79 E-value=7.4 Score=47.01 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhCCCChHH
Q 002083 249 FIQIRLLKILALLGSGDKQA 268 (969)
Q Consensus 249 WlQikLLklL~~l~~~d~~~ 268 (969)
=++..++++|..+...++..
T Consensus 200 ~v~~~a~~~L~~ls~dn~~~ 219 (684)
T 4gmo_A 200 DIYEEAISCLTTLSEDNLKV 219 (684)
T ss_dssp HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCHHH
Confidence 36777888888877765543
No 113
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=82.00 E-value=14 Score=36.52 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=74.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHH
Q 002083 148 PQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFV 225 (969)
Q Consensus 148 ~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv 225 (969)
..|.++-.....-.-...++.+.-+.+..++.-++.+..|++.|..+|+.|+..||.+|-.++++-...|+..+ ..|+
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl 97 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFA 97 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 44555555544445566677788888888887778888899999999999999999887655555466676555 4577
Q ss_pred HHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 226 SILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 226 ~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
+-|..++..+ .+|-.+-+++.++....
T Consensus 98 ~el~~l~~~~----------~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 98 TEVRAVIKNK----------AHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTT----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccC----------CCHHHHHHHHHHHHHHH
Confidence 7776666421 25778888888887653
No 114
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=80.86 E-value=11 Score=38.89 Aligned_cols=134 Identities=6% Similarity=-0.102 Sum_probs=82.2
Q ss_pred HHHhhcCCCcchhHHHHHHHHhhhcc-CchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCC
Q 002083 78 AVKMTHDDNLVLKRTGYLAVTLFLNE-DHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGH 156 (969)
Q Consensus 78 vIkl~sS~~~~~KRlgYLals~~~~~-~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d 156 (969)
+-.+..++-++.+-++-+.+...... .++.+ -.+..+... .+.=..+=++| ++++.+.... -+.+.+.|.+-+.|
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l-~~~~~~l~~-~~nWd~~D~~a-~~~~~~~~~~-~~~~~~~i~~W~~s 135 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSLEEV-VAFKAYVPQ-KAWWDSVDAWR-KFFGSWVALH-LTELPTIFALFYGA 135 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCHHHH-HHGGGGTTT-TCSHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHTTC
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCHHHH-HHHHHHhcc-CCcHHHHHHHH-HHHHHHHHHC-hHHHHHHHHHHHcC
Confidence 34577778888888887777765433 23322 112222222 11112232344 4444432110 11245668899999
Q ss_pred CChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh
Q 002083 157 SKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 157 ~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
.+.++||.|+.+++...+ . .....+++.+..++.|.+..|.-+.-..|-++.+.+|+..
T Consensus 136 ~~~w~rR~ai~~~l~~~~-~-~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 136 ENFWNRRVALNLQLMLKE-K-TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp SSHHHHHHHHHTTTTCGG-G-CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-C-CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 999999999998864422 1 2234456666678899999998888888999998888653
No 115
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=79.71 E-value=35 Score=33.22 Aligned_cols=112 Identities=9% Similarity=0.047 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HH
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--IS 223 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~ 223 (969)
+...|.++-....+---..+++-+.-+.+..|+.-++.+..|++.|...||.|+..||.+|-.+.++-...|+..+ ..
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 3444555555555445667788888888888877778888999999999999999999887666655566676554 45
Q ss_pred HHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 224 FVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 224 lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
|++-|..++..++.. .-.++=.+-++|.++....
T Consensus 92 Fl~eL~kl~~~k~~~-----~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 92 FLNELIKVVSPKYLG-----SRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHCTTTTG-----GGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccC-----CCCCHHHHHHHHHHHHHHH
Confidence 777777666432110 1235667888888887653
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=79.68 E-value=47 Score=37.39 Aligned_cols=149 Identities=11% Similarity=0.144 Sum_probs=99.1
Q ss_pred chHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcc-----------cc--
Q 002083 73 FGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL-----------IN-- 139 (969)
Q Consensus 73 f~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I-----------~~-- 139 (969)
-.+.+++.+..+++...||.+==|+...+..+.|++.-++.+|..=|.+.++.+.=-|+.+.++| .+
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~ 142 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVIS 142 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 46788999999999999999999999988889999999999999888888887665555444443 22
Q ss_pred ------cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC------Cc------------ch---------------
Q 002083 140 ------EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKS------PS------------SV--------------- 180 (969)
Q Consensus 140 ------~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~------Pe------------~v--------------- 180 (969)
-+.+..+-..|...+.+.+.-||=.|+--+-++.... |+ .+
T Consensus 143 ~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~E 222 (386)
T 3o2t_A 143 ELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEE 222 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHH
Confidence 1223344456777777778888866555555544211 11 01
Q ss_pred -hhHHHHHHHhhcC--CChhHHHHHHHHHHHhhhhCchhhHHHH
Q 002083 181 -QHLVSNFRKRLCD--NDPGVMGATLCPLFDLITVDVNSYKDLV 221 (969)
Q Consensus 181 -~~l~~~l~~lL~D--~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv 221 (969)
..+++.+.+.+.+ .++..+.++++.|.-|++.+|..+..++
T Consensus 223 A~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl 266 (386)
T 3o2t_A 223 GKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVI 266 (386)
T ss_dssp HHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 0245555555543 3444556677778888888876544333
No 117
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=79.28 E-value=21 Score=35.60 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HH
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--IS 223 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~ 223 (969)
+...|.++-+....-.-...++.+.-+.+..++.-++.+..|++.|...|+.|+..||.+|-.++++-...|+..+ ..
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~ 93 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR 93 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 4455566666555555667788888888888887778888899999999999999999887655555466676555 45
Q ss_pred HHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 224 FVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 224 lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
|++-|..++..++. ....++=.+-++|.++....
T Consensus 94 Fl~eL~kl~~~k~~-----~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 94 FLNELIKVVSPKYL-----GDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHCCCCC-----CTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccC-----CCCCCHHHHHHHHHHHHHHH
Confidence 67777766642210 01235677888888886643
No 118
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.40 E-value=21 Score=34.67 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=71.5
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHHHH
Q 002083 150 VVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFVSI 227 (969)
Q Consensus 150 V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv~i 227 (969)
|.++-+...+---..+++-+.-+.+..|+.-++.+..|++.|...|+.|+..||.+|-.+.++-...|+..+ ..|++-
T Consensus 6 iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~e 85 (148)
T 1mhq_A 6 LNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNE 85 (148)
T ss_dssp HHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 344444444334456677777777777776677888889999999999999999887655555566676555 457776
Q ss_pred HHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 228 LKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 228 Lk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
|..++..+++. ...++=.+-++|.++....
T Consensus 86 L~kl~~~k~~~-----~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 86 LIKVLSPKYLG-----SWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHTTCCSTTS-----CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHccccCC-----CCCCHHHHHHHHHHHHHHH
Confidence 66654322111 1135677888888886653
No 119
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=74.81 E-value=31 Score=33.13 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=69.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHHH
Q 002083 149 QVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFVS 226 (969)
Q Consensus 149 ~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv~ 226 (969)
.|.++-+....---...++-+.-+.+..|+.-.+.+..|++.|..+|+.|+..||.+|-.+.++-...|+..+ ..|++
T Consensus 9 ~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 9 DVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp HHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 3444444444444456677777778888877777888889999999999999999877555544455666544 45666
Q ss_pred HHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 227 ILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 227 iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
-|..++.. .+|=.+-+++.++....
T Consensus 89 el~~l~~~-----------~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 89 EVSNVLNK-----------GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHH-----------SCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-----------CCHHHHHHHHHHHHHHH
Confidence 66655531 24667778888776543
No 120
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=73.07 E-value=1.8e+02 Score=37.86 Aligned_cols=313 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhCC---------------------------CCCchHHHHHHHHHHHHH
Q 002083 12 EFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISE---------------------------PDIPKRKMKEYIIRLVYV 64 (969)
Q Consensus 12 ~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~~---------------------------~~~~~~~~ke~l~KLiyl 64 (969)
.|--+||-|=.+-+.++-.++ +.+||+.|+- ..-+...+...++-.|+-
T Consensus 243 ~LP~lIkFLL~s~t~~~~~ev----I~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks 318 (1323)
T 3s4w_B 243 DFPVIVKFLLHSVTDTTSLEV----IAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKS 318 (1323)
T ss_dssp HHHHHHHHHHHSCSSTTHHHH----HHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCHhhHHHH----HHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHH
Q ss_pred HH-cCCCCcchHHHHHHhhcCC-CcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHH--ccccc
Q 002083 65 EM-LGHDASFGYIHAVKMTHDD-NLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVC--KLINE 140 (969)
Q Consensus 65 ~m-lG~Dvsf~~~~vIkl~sS~-~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls--~I~~~ 140 (969)
-+ ..-++.-+++-+|+...+. ++ |-+=.+.+.++...+.....-+-++++|=..+.--...-++ +++. .-.-.
T Consensus 319 ~l~~~k~i~eAwlK~I~~~~~~~~h--k~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~-~~f~~h~~vL~ 395 (1323)
T 3s4w_B 319 AIRYEKTISEAWFKAIERIESAAEH--KSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLD-SAFSTHYLVLK 395 (1323)
T ss_dssp HHHHCHHHHHHHHHHHHHGGGSTTC--CTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHH-HHHHHHHHHHT
T ss_pred HHhcChHHHHHHHHHHhCCCccccc--chhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHH-HHHHhhHHHHH
Q ss_pred chHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchh-hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHH
Q 002083 141 ETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQ-HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKD 219 (969)
Q Consensus 141 el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~-~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~ 219 (969)
+..+.++.....++.+..+.||--+.+.-..+|..+-+..+ +++..+...+|+.+..=+.+|+.+|.+++..+++..++
T Consensus 396 ~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~ 475 (1323)
T 3s4w_B 396 DICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRL 475 (1323)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhH
Q ss_pred HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHh-hhHHHHHHhHhccCCCCCCCchHH--HH
Q 002083 220 LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASE-NMYTVVGDIFRKCDSSSNIGNAVL--YE 296 (969)
Q Consensus 220 Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se-~l~~iL~~iL~~~~~~~Ni~~AVl--yE 296 (969)
....+..+| ||..-.++--.-++.++|..+.-.++.... .+.+-+.-++++.-++.+..+=-+ ..
T Consensus 476 ~a~~l~giL------------D~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIG 543 (1323)
T 3s4w_B 476 NAAFVKGIL------------DYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIG 543 (1323)
T ss_dssp THHHHHGGG------------GGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHH------------HhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHH
Q ss_pred HHHHHHhcCCC---------------HHHHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhh
Q 002083 297 CICCVSSIYAN---------------PKLIESAADVIARFLKS--DSHNLKYMGIDALGRLIKT 343 (969)
Q Consensus 297 aik~I~~l~~~---------------~~ll~~ai~~L~~fL~s--~d~NlrYvaL~~L~~I~~~ 343 (969)
|+..+-.+... ++..+++.+.|.....+ ..|...-+-.+=|..++..
T Consensus 544 av~~v~~~~~~~~~~~~s~~~~~~l~~~~~~q~~~Ll~lv~~s~~~sp~~~AL~YDELA~~i~~ 607 (1323)
T 3s4w_B 544 AVTMAGIMAEDRSVPSNSSQRSANVSSEQRTQVTSLLQLVHSCTEHSPWASSLYYDEFANLIQE 607 (1323)
T ss_dssp HHHHHHHTTC----------------CHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCccccccccCCHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhc
No 121
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=72.91 E-value=22 Score=35.05 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=57.5
Q ss_pred HhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc---c----chH-hhHHHHHH
Q 002083 80 KMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN---E----ETI-PAVLPQVV 151 (969)
Q Consensus 80 kl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~---~----el~-~~l~~~V~ 151 (969)
+.++......---..+-++-+.+.+++-.--++-.|+|-|++.|+.++-+||..|=.+.. . +++ ..++..+.
T Consensus 22 kATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~ 101 (163)
T 1x5b_A 22 KATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR 101 (163)
T ss_dssp HHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 344434444444455566666666777778888899999999999988888887632210 1 111 23444455
Q ss_pred HhcCC-CChHHHHHHHHHHHHHH
Q 002083 152 ELLGH-SKEAVRRKAIMALHRFY 173 (969)
Q Consensus 152 ~lL~d-~~pyVRKkA~lal~kiy 173 (969)
+++.. .++-||+|++..+..-.
T Consensus 102 ~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 102 AVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHH
Confidence 55543 56778888766554433
No 122
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=72.70 E-value=91 Score=38.44 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=61.5
Q ss_pred cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC---cch-hhHHHHHHHhhcC---CChhHHHHHHHHHHHhhhh
Q 002083 140 EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSP---SSV-QHLVSNFRKRLCD---NDPGVMGATLCPLFDLITV 212 (969)
Q Consensus 140 ~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~P---e~v-~~l~~~l~~lL~D---~D~~Vv~aAl~~L~ei~~~ 212 (969)
..+++.+.|.+..++-+++..|...+..|+..+....| +.+ +.+++++...|.. ..+.=+.+|+..|..+++-
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~ 413 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRF 413 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Confidence 34567888888899999999999999999999999999 875 5678888888765 5666666777776655431
Q ss_pred --CchhhHHHH
Q 002083 213 --DVNSYKDLV 221 (969)
Q Consensus 213 --~p~~~~~Lv 221 (969)
..+.|+.++
T Consensus 414 lv~~~~yr~hl 424 (799)
T 1vsy_4 414 IVMDKLYRVHI 424 (799)
T ss_dssp HTTSTTGGGHH
T ss_pred HhcCcccHHHH
Confidence 223455443
No 123
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=70.75 E-value=6.6 Score=49.74 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=79.6
Q ss_pred HhhcCCCc-chhHH-HHHHHHhhhc--cCchHHHHHHHHHHhhhc-CccHHHHHHHHHHHHc-------ccccchHhhHH
Q 002083 80 KMTHDDNL-VLKRT-GYLAVTLFLN--EDHDLIILIVNTIQKDLK-SDNYLIVCAALNAVCK-------LINEETIPAVL 147 (969)
Q Consensus 80 kl~sS~~~-~~KRl-gYLals~~~~--~~~dlllL~iNtLqKDL~-s~N~~vralALr~Ls~-------I~~~el~~~l~ 147 (969)
.++..++- ++.++ .+..+..+.. -.++.+-.+++.|..-.+ +++- .|..+|.++-. +.+.+-...+.
T Consensus 767 ~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~ 845 (997)
T 1vsy_5 767 GLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKIL 845 (997)
T ss_dssp TTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTH
T ss_pred HHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 34444544 55666 5555555432 245667778899988777 6777 99988888632 34455557788
Q ss_pred HHHHHhcCCCC-hHHHHHHHHHHHHHHhhC-C-cchhhHHHHHHHhh
Q 002083 148 PQVVELLGHSK-EAVRRKAIMALHRFYQKS-P-SSVQHLVSNFRKRL 191 (969)
Q Consensus 148 ~~V~~lL~d~~-pyVRKkA~lal~kiy~~~-P-e~v~~l~~~l~~lL 191 (969)
..|..+|.|+. .-||..|+.+|.-+.+-. + ..+.+++..+.+.+
T Consensus 846 ~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~ 892 (997)
T 1vsy_5 846 EFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL 892 (997)
T ss_dssp HHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 89999999999 999999999999888877 6 55556777776654
No 124
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=70.29 E-value=21 Score=39.45 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhh---------ChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCC--c
Q 002083 314 AADVIARFLKSDSHNLKYMGIDALGRLIKT---------SPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSS--N 382 (969)
Q Consensus 314 ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~---------~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~--N 382 (969)
....|.+.+...+.|+.-.+|.+|..|+.. +|.+++ .++..+...+..|-+.||+||..+|..+ |
T Consensus 161 GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~----~lyslv~s~~~~V~k~AL~LL~v~V~~se~~ 236 (339)
T 3dad_A 161 GLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQ----WLYTLCASLSRLVVKTALKLLLVFVEYSENN 236 (339)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH----HHHHGGGCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred cHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHH----HHHHHHcCccHHHHHHHHHHHHHHHccCccc
Confidence 456788888888899999999999999765 444443 3444455678999999999999998665 8
Q ss_pred HHHHHHHHHHH
Q 002083 383 VEVIVDRMIDY 393 (969)
Q Consensus 383 v~~IV~eLl~y 393 (969)
...+.++...+
T Consensus 237 ~~lv~~av~~v 247 (339)
T 3dad_A 237 APLFIRAVNSV 247 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHh
Confidence 88777766543
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.03 E-value=37 Score=32.53 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=59.9
Q ss_pred hhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc---ccch-----HhhHHHHHHH
Q 002083 81 MTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI---NEET-----IPAVLPQVVE 152 (969)
Q Consensus 81 l~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~---~~el-----~~~l~~~V~~ 152 (969)
.++...-..---+.+-++-..+.+++-.--++-.|+|-|++.|+.+.-.||..|-.+. .+.+ -..++..+.+
T Consensus 13 AT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 13 ATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp HTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHH
T ss_pred HcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 3333333444445566666777777778889999999999999998888887763221 0111 1334445556
Q ss_pred hcCCCChHHHHHHHHHHHHHH
Q 002083 153 LLGHSKEAVRRKAIMALHRFY 173 (969)
Q Consensus 153 lL~d~~pyVRKkA~lal~kiy 173 (969)
++...++-||+|.+..+..-.
T Consensus 93 l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 93 VLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHH
Confidence 665567888888776665443
No 126
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=68.90 E-value=1.4e+02 Score=32.85 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=65.6
Q ss_pred cCccHHHHHHHHHHHHccccc-----chH--hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhh----------
Q 002083 120 KSDNYLIVCAALNAVCKLINE-----ETI--PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQH---------- 182 (969)
Q Consensus 120 ~s~N~~vralALr~Ls~I~~~-----el~--~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~---------- 182 (969)
.+...-..+.|||++..+..- .++ +.++..|..+++.....|=|.|+--|..+....+.-..-
T Consensus 170 ~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~ 249 (339)
T 3dad_A 170 AAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVAS 249 (339)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhh
Confidence 333555688999999988766 444 456777888888888889888877777776666543221
Q ss_pred -----HHHHHHHhhc---CCChhHHHHHHHHHHHhhhhCc
Q 002083 183 -----LVSNFRKRLC---DNDPGVMGATLCPLFDLITVDV 214 (969)
Q Consensus 183 -----l~~~l~~lL~---D~D~~Vv~aAl~~L~ei~~~~p 214 (969)
.++.+...|. ..|.-+...|+.++..++..-|
T Consensus 250 ~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 250 TTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp HHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred ccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 1345556776 4677888888888777765544
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.30 E-value=45 Score=34.29 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHH
Q 002083 147 LPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISF 224 (969)
Q Consensus 147 ~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~l 224 (969)
...|.++-++..+---...++.+.-+.+..++.-++.+..|++.|..+|+.|+..||.+|-.++++-...|+..+ ..|
T Consensus 7 ~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~f 86 (220)
T 1dvp_A 7 CKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKEN 86 (220)
T ss_dssp HHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHH
Confidence 344455555444444455677788888888887778888899999999999999999888666666566665544 346
Q ss_pred HHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHh
Q 002083 225 VSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 225 v~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l 261 (969)
++.|..++... +++=.+-++|.++...
T Consensus 87 l~~l~~l~~~~----------~~~~Vk~kil~li~~W 113 (220)
T 1dvp_A 87 CEMFSSFLEST----------PHENVRQKMLELVQTW 113 (220)
T ss_dssp HHHHHHHHHHC----------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC----------CcHHHHHHHHHHHHHH
Confidence 66666554321 2345666677666554
No 128
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=67.66 E-value=17 Score=37.85 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=33.3
Q ss_pred HHhcCCCChHHHHHHHH----HHHHHHhhC--CcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh
Q 002083 151 VELLGHSKEAVRRKAIM----ALHRFYQKS--PSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 151 ~~lL~d~~pyVRKkA~l----al~kiy~~~--Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
.+.+.+.+.++|+.|+. -+..+..+. -..+..+++.+...+.|.+..|.-|.--.|.++.+.+++..
T Consensus 114 ~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~ 186 (235)
T 1t06_A 114 DKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLH 186 (235)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHH
Confidence 44555566666666665 333322121 12334455555555555555555555555555555555443
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.60 E-value=44 Score=34.67 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=68.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHH--HHHHH
Q 002083 149 QVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLV--ISFVS 226 (969)
Q Consensus 149 ~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~lv~ 226 (969)
.|.++-.....--=..+++-+.-+.+..++--.+.+..|++.|...|+.|+..||.+|-.++++-...|+..+ ..|++
T Consensus 12 ~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 12 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 4444444444444456677777777877777777888899999999999999999877555554455555444 45566
Q ss_pred HHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHh
Q 002083 227 ILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 227 iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l 261 (969)
.|..++.. .+++=.+-++|.++...
T Consensus 92 ~l~~l~~~----------~~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 92 ELKDLLKR----------QVEVNVRNKILYLIQAW 116 (226)
T ss_dssp HHHHHHHH----------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcc----------CCCHHHHHHHHHHHHHH
Confidence 66655532 12455677777777654
No 130
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=67.56 E-value=1e+02 Score=36.78 Aligned_cols=230 Identities=13% Similarity=0.088 Sum_probs=129.2
Q ss_pred HhhcCCCcchhHHHHHHHHhhhcc-----------CchHHHHHHHHHHhh----hcCcc-----HHHHHHHHHHHHcccc
Q 002083 80 KMTHDDNLVLKRTGYLAVTLFLNE-----------DHDLIILIVNTIQKD----LKSDN-----YLIVCAALNAVCKLIN 139 (969)
Q Consensus 80 kl~sS~~~~~KRlgYLals~~~~~-----------~~dlllL~iNtLqKD----L~s~N-----~~vralALr~Ls~I~~ 139 (969)
.-+-+++-+.|.=+-+++..++.. |.|+++-++-.|.-| .-+.. -...|-+|-++ .-..
T Consensus 181 ~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp 259 (800)
T 3oc3_A 181 DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLI 259 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTS
T ss_pred HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCC
Confidence 344566777777777777665532 336665444444433 33332 24456666666 3333
Q ss_pred cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHH
Q 002083 140 EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKD 219 (969)
Q Consensus 140 ~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~ 219 (969)
++ . .++..+.+.+..+.--||--+.+++--+...-.+ ++..++.+...|.|.|-.|.+.|..+|..+. .++....
T Consensus 260 ~e-~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~ 334 (800)
T 3oc3_A 260 GP-N-DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDL 334 (800)
T ss_dssp CS-C-CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHH
T ss_pred hh-H-HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHH
Confidence 33 2 3333444556778888999999988755222222 5667788888899999999998888887777 4544444
Q ss_pred HHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhCCCChH--HHhhhHHHHHHhHhccCCCCCCCchHHHHH
Q 002083 220 LVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQ--ASENMYTVVGDIFRKCDSSSNIGNAVLYEC 297 (969)
Q Consensus 220 Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~~~d~~--~se~l~~iL~~iL~~~~~~~Ni~~AVlyEa 297 (969)
++++|.+.+... .| .. -.--.++++|+.++...+. ....+.+-|-.+++++ -.+|...+
T Consensus 335 ----LL~iLWd~L~~L--DD-----LS--ASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHt------ITSVR~AV 395 (800)
T 3oc3_A 335 ----VLEKCWKNIESE--EL-----IS--VSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSP------VPEVRTSI 395 (800)
T ss_dssp ----HHHHHHHHHHTC--CS-----CC--TTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCS------SHHHHHHH
T ss_pred ----HHHHHHHHhhhh--cc-----cc--hhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCC------cHHHHHHH
Confidence 444444433221 11 11 1123466666654321110 0013344455566654 24788888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 002083 298 ICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALG 338 (969)
Q Consensus 298 ik~I~~l~~~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~ 338 (969)
++++..+. +..++..+. ..+|-..+.+++-++++...
T Consensus 396 L~TL~tfL-~~~~LRLIF---QNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 396 LNMVKNLS-EESIDFLVA---EVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHTTTCC-CHHHHHHHH---HHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-hhhHHHHHH---HHHHhCCcHHHHHHHHHHHH
Confidence 88887665 444444332 34444556677776666553
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=66.97 E-value=45 Score=32.33 Aligned_cols=88 Identities=14% Similarity=0.054 Sum_probs=57.0
Q ss_pred hhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc---cc----ch-HhhHHHHHHHhcCC----
Q 002083 89 LKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI---NE----ET-IPAVLPQVVELLGH---- 156 (969)
Q Consensus 89 ~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~---~~----el-~~~l~~~V~~lL~d---- 156 (969)
.---+.+-++-+.+.+++-.--++-.|+|=|+++|+.+.-+||..|=.+. .+ ++ -..++..+.+++..
T Consensus 17 ~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~ 96 (148)
T 1mhq_A 17 QDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLG 96 (148)
T ss_dssp CCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTS
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCC
Confidence 33344556666666677778889999999999999999999998773221 11 11 23455566666653
Q ss_pred --CChHHHHHHHHHHHHHHhhC
Q 002083 157 --SKEAVRRKAIMALHRFYQKS 176 (969)
Q Consensus 157 --~~pyVRKkA~lal~kiy~~~ 176 (969)
.++-||+|++..+..-...+
T Consensus 97 ~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 97 SWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHc
Confidence 36678887766555444433
No 132
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.42 E-value=54 Score=32.56 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=62.7
Q ss_pred HhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccc--------cchHhhHHHHHH
Q 002083 80 KMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLIN--------EETIPAVLPQVV 151 (969)
Q Consensus 80 kl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~--------~el~~~l~~~V~ 151 (969)
+.++....+.---..+-++-+.+.+++-.-.++-.|+|=|+++|+.++-+||..|=.+.. .-.-..++..+.
T Consensus 20 kATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 20 KATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp HHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 444444444445556677777777777788889999999999999999999987732210 111123444556
Q ss_pred HhcC------CCChHHHHHHHHHHHHHHhhCC
Q 002083 152 ELLG------HSKEAVRRKAIMALHRFYQKSP 177 (969)
Q Consensus 152 ~lL~------d~~pyVRKkA~lal~kiy~~~P 177 (969)
+++. ..++-||+|++..+..-...++
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6654 2356788887766665554443
No 133
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=66.02 E-value=57 Score=31.72 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=64.7
Q ss_pred hhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHccc--------ccchHhhHHHHHHH
Q 002083 81 MTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLI--------NEETIPAVLPQVVE 152 (969)
Q Consensus 81 l~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~--------~~el~~~l~~~V~~ 152 (969)
.++......---+.+-++-..+.+++-.--++-.|+|=|+++||.+.-+||..|-.+. ..---..++..+.+
T Consensus 19 ATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~k 98 (149)
T 3g2s_A 19 ATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIK 98 (149)
T ss_dssp HSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHH
T ss_pred HcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 4444444444455667777778788888889999999999999999999998764321 11112344555666
Q ss_pred hcCC------CChHHHHHHHHHHHHHHhhCCc
Q 002083 153 LLGH------SKEAVRRKAIMALHRFYQKSPS 178 (969)
Q Consensus 153 lL~d------~~pyVRKkA~lal~kiy~~~Pe 178 (969)
++.. .++-||.|.+..+..-...+++
T Consensus 99 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 99 VVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 6653 4677888877766665554443
No 134
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=64.74 E-value=70 Score=31.19 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhCchhhHHHH--H
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLC-DNDPGVMGATLCPLFDLITVDVNSYKDLV--I 222 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~-D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~ 222 (969)
+...|.++-+...+---...++-+.-+.+..++.-++.+..|++.|. ..|+.|+..||.+|-.+.++-...|+..+ .
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 34445555554444445666777777888888777788888999997 58999999999887666655556666544 3
Q ss_pred HHHHH-HHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHh
Q 002083 223 SFVSI-LKQVAERRLPKSYDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 223 ~lv~i-Lk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l 261 (969)
.|++- |..++..+ + -+.+-.+-++|.++...
T Consensus 97 ~fl~e~Lvk~~~~k----~----~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 97 DFVESVLVRTILPK----N----NPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHTHHHHSTT----T----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC----C----CCcHHHHHHHHHHHHHH
Confidence 45554 44444211 1 12345677788777654
No 135
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=64.10 E-value=23 Score=36.79 Aligned_cols=70 Identities=11% Similarity=0.038 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhh
Q 002083 146 VLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 146 l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
+.+.+.+.+.|.++++||.|+.++...+.. .+ ...+...+..++.|.+..|.-+.-..|-++.+.+|+..
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~-~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYKQK-MD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCGGG-CC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhC-CC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 345677888999999999999988664432 11 23455667778899999998888888899988888653
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.04 E-value=89 Score=32.27 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=56.6
Q ss_pred HhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcc------------cccchHhhHH
Q 002083 80 KMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKL------------INEETIPAVL 147 (969)
Q Consensus 80 kl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I------------~~~el~~~l~ 147 (969)
+.++..+.+.---+.|.++-..+.+++-.--++-.|+|=|+++|+.+.-+||..|-.+ .+.+.+
T Consensus 15 kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl---- 90 (226)
T 3zyq_A 15 KATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTM---- 90 (226)
T ss_dssp HHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHH----
T ss_pred HHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHH----
Confidence 3444444444445556666677777777888999999999999999999999877432 333333
Q ss_pred HHHHHhcC-CCChHHHHHHHHHHHHH
Q 002083 148 PQVVELLG-HSKEAVRRKAIMALHRF 172 (969)
Q Consensus 148 ~~V~~lL~-d~~pyVRKkA~lal~ki 172 (969)
..+.+++. ..++-||+|++..+..-
T Consensus 91 ~~l~~l~~~~~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 91 EELKDLLKRQVEVNVRNKILYLIQAW 116 (226)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 33333332 34566777766554443
No 137
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=59.32 E-value=52 Score=34.17 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=73.9
Q ss_pred HHHhhcCCCcchhHHHHHHHHh----------hhc--cCchHHH-HHHHHHHhh----------hcCccHHHHHHHHH--
Q 002083 78 AVKMTHDDNLVLKRTGYLAVTL----------FLN--EDHDLII-LIVNTIQKD----------LKSDNYLIVCAALN-- 132 (969)
Q Consensus 78 vIkl~sS~~~~~KRlgYLals~----------~~~--~~~dlll-L~iNtLqKD----------L~s~N~~vralALr-- 132 (969)
+.++..++.++.+-++-+.+.. +.. .+-|+.= ++-|.+.++ +.|+|+..|-.|+-
T Consensus 53 a~~Lw~~~~~E~r~lA~li~~~~~~~~~~~~~~v~~~~nWd~~D~~~~~l~~~~~~~~~~~~~W~~s~~~w~rR~ai~~q 132 (235)
T 1t06_A 53 AEELYATGNYDAMYFAGIIADPKAMSESDFDRWIDGAYFYMLSDYVVAVTLSESNIAQDVADKWIASGDELKMSAGWSCY 132 (235)
T ss_dssp HHHHHHTCCHHHHHHHHHHCCGGGCCHHHHHHHHHTCCSHHHHHHTHHHHHTTSSSHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHhhCHHhcCHHHHHHHHhCCCcHHHHHHHHHHHHhcCchHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 5667777777776665543221 110 1223332 223333332 46888999988888
Q ss_pred --HHHccc----ccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHH
Q 002083 133 --AVCKLI----NEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRK 189 (969)
Q Consensus 133 --~Ls~I~----~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~ 189 (969)
.++.+. ...-.+.++..+...+.|...+|||...-+|.-+...+|+.+...+....+
T Consensus 133 ~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~~~ 195 (235)
T 1t06_A 133 CWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKE 195 (235)
T ss_dssp HHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 556544 234567778888889999999999999999999999999988776554443
No 138
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=58.53 E-value=1.9e+02 Score=30.59 Aligned_cols=161 Identities=11% Similarity=0.143 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHcCCCCcc---hHHHHHHhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHH
Q 002083 56 EYIIRLVYVEMLGHDASF---GYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALN 132 (969)
Q Consensus 56 e~l~KLiyl~mlG~Dvsf---~~~~vIkl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr 132 (969)
+.+.++-=+.+.+ |.++ .+.+++.+..+++...||.+==++...+..+++++.-++.+|..=|++.++.+.=-|+.
T Consensus 34 ~~L~qa~el~~~~-dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~ 112 (257)
T 3gs3_A 34 ELLAKVQETVLGS-CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQ 112 (257)
T ss_dssp HHHHHHHHHHTTT-TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5666655555555 3332 34556777778999999999999988889999999999999999999888877765555
Q ss_pred HHHcc-----------cc--------cchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhh--CC--c-----------
Q 002083 133 AVCKL-----------IN--------EETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQK--SP--S----------- 178 (969)
Q Consensus 133 ~Ls~I-----------~~--------~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~--~P--e----------- 178 (969)
+++++ .+ -+.+..+-..|...+.+.+.-||=.|+--+-++... .+ +
T Consensus 113 ~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~ 192 (257)
T 3gs3_A 113 ACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLA 192 (257)
T ss_dssp HHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGG
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHH
Confidence 55543 21 112334445677777778888986665555554421 11 0
Q ss_pred -------ch-----h----hHHHHHHHhhcCC--ChhHHHHHHHHHHHhhhhCchhh
Q 002083 179 -------SV-----Q----HLVSNFRKRLCDN--DPGVMGATLCPLFDLITVDVNSY 217 (969)
Q Consensus 179 -------~v-----~----~l~~~l~~lL~D~--D~~Vv~aAl~~L~ei~~~~p~~~ 217 (969)
.+ + .+++.+.+.+.+. ....+.++++.|.-|.+.+|..+
T Consensus 193 ~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~ 249 (257)
T 3gs3_A 193 DVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM 249 (257)
T ss_dssp GSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence 01 0 2445454544443 23345577777777888877653
No 139
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=56.49 E-value=17 Score=37.84 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=53.5
Q ss_pred HHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHH
Q 002083 115 IQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVS 185 (969)
Q Consensus 115 LqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~ 185 (969)
+.+=+.|+|+.+|=.|+-.+-......-...+...+..++.|+..||||...=+|--+++.+|+.+..+++
T Consensus 136 l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 136 IPKWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 44556788998887777655333323334456677888899999999999999999999999998876554
No 140
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=56.47 E-value=3.9e+02 Score=33.69 Aligned_cols=132 Identities=8% Similarity=0.064 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhCh-----hHHHHhHHhhccccCCCc-hHHHHHHHHHhhcc
Q 002083 305 YANPKLIESAADVIARFLK-SDSHNLKYMGIDALGRLIKTSP-----EIAEQHQLAVIDCLEDPD-DTLKRKTFELLYKM 377 (969)
Q Consensus 305 ~~~~~ll~~ai~~L~~fL~-s~d~NlrYvaL~~L~~I~~~~P-----~l~~~h~~~I~~cL~D~D-~sIR~kaLdLL~~L 377 (969)
...++.+..+++.|..... +.+- .|..+|..+..+.-+|- +-...-...++.+|.|+. ..||..|-+.|..|
T Consensus 793 ~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgl 871 (997)
T 1vsy_5 793 PIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDI 871 (997)
T ss_dssp CCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 3345566666666666565 3344 88888888777765432 222233456888999999 99999999999888
Q ss_pred --cC-C-CcHHHHHHHHHHHHhh--cC---------ChhhHHHHHHHHHHHhhhcCCc---hHHHHHHHHHHHhhhCc
Q 002083 378 --TK-S-SNVEVIVDRMIDYMIS--IN---------DNHYKTEIASRCVELAEQFAPS---NHWFIQTMNKVFEHAGD 437 (969)
Q Consensus 378 --~n-~-~Nv~~IV~eLl~yl~~--~~---------D~~~k~eli~~I~~laekyap~---~~W~Id~L~~ll~~~gd 437 (969)
|. . ..+..++.++.+-+.. .. +..-|-..|-.++.+..-|+.+ +.|.-++|..|-..+.+
T Consensus 872 l~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~ 949 (997)
T 1vsy_5 872 VHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART 949 (997)
T ss_dssp HHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS
T ss_pred HHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC
Confidence 43 3 3333344433322211 00 0012333455556666777766 58988888776555444
No 141
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=55.91 E-value=2.4e+02 Score=31.08 Aligned_cols=101 Identities=16% Similarity=0.321 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh--hHHH------HhHHhhccccCCCchHHHHHHHHHhhc-ccCCCcH
Q 002083 313 SAADVIARFLKSDSHNLKYMGIDALGRLIKTSP--EIAE------QHQLAVIDCLEDPDDTLKRKTFELLYK-MTKSSNV 383 (969)
Q Consensus 313 ~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P--~l~~------~h~~~I~~cL~D~D~sIR~kaLdLL~~-L~n~~Nv 383 (969)
.....+.++|.|++.-.|--+|+.|..|..... .+.. .+...++.+|+|+...|+-.|..+.-- ++|++.-
T Consensus 209 ~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~ 288 (341)
T 1upk_A 209 RFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT 288 (341)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC
Confidence 455667778888888888888888888875533 3332 456678999999999999999887543 4677766
Q ss_pred HHHHHH-------HHHHHhh----c-CChhhHHH---HHHHHHHH
Q 002083 384 EVIVDR-------MIDYMIS----I-NDNHYKTE---IASRCVEL 413 (969)
Q Consensus 384 ~~IV~e-------Ll~yl~~----~-~D~~~k~e---li~~I~~l 413 (969)
..|++- |++|+.+ . .|+.|..| +|+.|..+
T Consensus 289 ~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 289 QPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 666553 4445543 2 35556555 55555443
No 142
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=54.66 E-value=21 Score=36.81 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=55.1
Q ss_pred HHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHH
Q 002083 114 TIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLV 184 (969)
Q Consensus 114 tLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~ 184 (969)
.+.+=+.|+|+.+|=.|+-.+-.-....-...+++.+..++.|+.-||||...=+|--+++.+|+.+..++
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 46777889999888777765433333334456677777799999999999999999999999999887665
No 143
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=54.47 E-value=2.1e+02 Score=31.21 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.2
Q ss_pred chHHHHHHHHHhhccc
Q 002083 363 DDTLKRKTFELLYKMT 378 (969)
Q Consensus 363 D~sIR~kaLdLL~~L~ 378 (969)
|..+|+|+++|+..+-
T Consensus 173 d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 173 DKQLQIKVLELISKIL 188 (315)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc
Confidence 7899999999887654
No 144
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=49.55 E-value=2.6e+02 Score=29.49 Aligned_cols=122 Identities=7% Similarity=0.158 Sum_probs=66.2
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhh----ccccCCCchHHHHHH
Q 002083 296 ECICCVSSIYA-NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAV----IDCLEDPDDTLKRKT 370 (969)
Q Consensus 296 Eaik~I~~l~~-~~~ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I----~~cL~D~D~sIR~ka 370 (969)
.+++.+-++.- +++....++..+.+--.-+-.|+..+| ..+..|.+.+|+++..-.+.+ ...|+.+|...+++-
T Consensus 23 ~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA-~ll~~L~~~~~~~~i~vVD~vlE~Ir~gLE~n~~~~nQrR 101 (248)
T 1uw4_B 23 KVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVA-NLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRR 101 (248)
T ss_dssp HHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcchhhcccchHHHHH-HHHHHHHhhChHHhhhhHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34555655543 344333333333322122224444443 345556667888776555444 445655555444432
Q ss_pred HH---Hh-----hcccCCCcHHHHHHHHHHHHh---------hcCChhhHHHHHHHHHHHhhhcC
Q 002083 371 FE---LL-----YKMTKSSNVEVIVDRMIDYMI---------SINDNHYKTEIASRCVELAEQFA 418 (969)
Q Consensus 371 Ld---LL-----~~L~n~~Nv~~IV~eLl~yl~---------~~~D~~~k~eli~~I~~laekya 418 (969)
+- .| ++|++.+.+-..+-.|+.|=. +..|..||..+|.++...|..|-
T Consensus 102 ia~vkyLgELYny~lv~s~vIf~~Ly~li~fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f 166 (248)
T 1uw4_B 102 ISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYF 166 (248)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHh
Confidence 22 22 247777766666666666532 12345699999999988887764
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.27 E-value=1.6e+02 Score=30.10 Aligned_cols=47 Identities=17% Similarity=0.083 Sum_probs=36.8
Q ss_pred hhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHH
Q 002083 89 LKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVC 135 (969)
Q Consensus 89 ~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls 135 (969)
.---..+.+.-..+.+++-.--++-.|+|=|+++|+.+.-+||..|-
T Consensus 21 ~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle 67 (220)
T 1dvp_A 21 PDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLE 67 (220)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33334566666777777778888999999999999999999997774
No 146
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=41.50 E-value=19 Score=37.96 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=44.4
Q ss_pred HHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcC
Q 002083 114 TIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCD 193 (969)
Q Consensus 114 tLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D 193 (969)
.+..=++|+++.||..|...++ + +.+..++.|+++.||+.|+..+ .+ +.+..++.|
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~l~----~-------~ll~~ll~D~d~~VR~aaa~~l------~~-------~~L~~Ll~D 205 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKRLP----E-------ESLGLMTQDPEPEVRRIVASRL------RG-------DDLLELLHD 205 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHSC----G-------GGGGGSTTCSSHHHHHHHHHHC------CG-------GGGGGGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHcCC----H-------HHHHHHHcCCCHHHHHHHHHhC------CH-------HHHHHHHcC
Confidence 3444567899999998888632 2 2234677889999999888653 22 234456777
Q ss_pred CChhHHHHHHH
Q 002083 194 NDPGVMGATLC 204 (969)
Q Consensus 194 ~D~~Vv~aAl~ 204 (969)
.|..|..++..
T Consensus 206 ~d~~VR~~aa~ 216 (244)
T 1lrv_A 206 PDWTVRLAAVE 216 (244)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 78777665543
No 147
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=40.08 E-value=2.6e+02 Score=30.43 Aligned_cols=108 Identities=17% Similarity=0.247 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccC
Q 002083 157 SKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRL 236 (969)
Q Consensus 157 ~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~l 236 (969)
..+-||.+|+-.|.-+.|-+|..+..+.. .+|..|.+.+..|.+.....-....-++-.++.+|..++.
T Consensus 82 ~~~~~rE~aarII~ssLRNNP~Al~~V~~--------~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~--- 150 (315)
T 3qml_C 82 LPLTLRELSTRVITSCLRNNPPVVEFINE--------SFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPV--- 150 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHH--------HCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCC---
T ss_pred CChhHHHHHHHHHHHHHccCHHHHHHHHH--------hChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhc---
Confidence 34458888888888888888887754332 2344443322222222211101112345566777766542
Q ss_pred CCCcCCCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHh
Q 002083 237 PKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFR 281 (969)
Q Consensus 237 p~~y~y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~ 281 (969)
..++| ++...-.|++++... ..+++...++.+++..++.
T Consensus 151 -~~~~F----~~~~m~~L~~ly~~~-~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 151 -TSEDL----PIYSTVVLQNVYERN-NKDKQLQIKVLELISKILK 189 (315)
T ss_dssp -CSTTC------CCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHH
T ss_pred -ChHhh----hhccHHHHHHHHccC-CCCHHHHHHHHHHHHHHcc
Confidence 21322 133445566666543 3355555556666655553
No 148
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=36.82 E-value=2.8e+02 Score=26.83 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=61.7
Q ss_pred HHHHH-HhhcCCCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhc-CccHHHHHHHHHHHHcccc---c----ch-Hh
Q 002083 75 YIHAV-KMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLK-SDNYLIVCAALNAVCKLIN---E----ET-IP 144 (969)
Q Consensus 75 ~~~vI-kl~sS~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~-s~N~~vralALr~Ls~I~~---~----el-~~ 144 (969)
+-..| +.++......---.-+-++-..+.+++-.--++-.|+|=|+ ++|+.++-+||..|=.+.. + ++ -.
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 33444 44444444444555566777777777888899999999998 5899988888887742210 1 11 12
Q ss_pred hHHHH-HHHhcC---CCChHHHHHHHHHHHHHHh
Q 002083 145 AVLPQ-VVELLG---HSKEAVRRKAIMALHRFYQ 174 (969)
Q Consensus 145 ~l~~~-V~~lL~---d~~pyVRKkA~lal~kiy~ 174 (969)
.++.. +.+++. ++..-||+|++..+..-..
T Consensus 97 ~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 97 DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 34444 455553 3455899988766655433
No 149
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=34.67 E-value=1.4e+02 Score=35.53 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=45.0
Q ss_pred HhhhcCccHHHHH---HHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhc
Q 002083 116 QKDLKSDNYLIVC---AALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLC 192 (969)
Q Consensus 116 qKDL~s~N~~vra---lALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~ 192 (969)
.+++..+.-.+|= ++|+-+..+... .+.+.+.|..+|.|.+.-||-.|+.++.-+. .|+.+..++..+=++|.
T Consensus 269 V~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~ 344 (800)
T 3oc3_A 269 VGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIE 344 (800)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHH
T ss_pred HhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhh
Confidence 3455666666663 445554222221 5677777777777777777777777777777 56666655555555443
No 150
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.79 E-value=1.4e+02 Score=28.67 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=33.9
Q ss_pred chhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHH
Q 002083 179 SVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQV 231 (969)
Q Consensus 179 ~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l 231 (969)
.+..+++.|.+.|.++++.|+.=||.+|--+|.+....|..-+..-..+++++
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l 98 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNL 98 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHH
Confidence 34667777888888888888888887777777665555544443333344443
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=32.71 E-value=63 Score=37.37 Aligned_cols=74 Identities=18% Similarity=0.355 Sum_probs=51.9
Q ss_pred ccCchHHHHHHHHHHhhhc------CccHHHHHHHHHHHHcccc--c---chHhh--HHHHHHHhcCCCChHHHHHHHHH
Q 002083 102 NEDHDLIILIVNTIQKDLK------SDNYLIVCAALNAVCKLIN--E---ETIPA--VLPQVVELLGHSKEAVRRKAIMA 168 (969)
Q Consensus 102 ~~~~dlllL~iNtLqKDL~------s~N~~vralALr~Ls~I~~--~---el~~~--l~~~V~~lL~d~~pyVRKkA~la 168 (969)
+.+-+++-..++.|.++-. +.++.+.|.|..=++.++. | .+++. .-..|.++++|+++-||+.|+.|
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 3345677788888875431 4578888888888876531 1 11111 23467889999999999999999
Q ss_pred HHHHHhh
Q 002083 169 LHRFYQK 175 (969)
Q Consensus 169 l~kiy~~ 175 (969)
+.|+...
T Consensus 471 vQklm~~ 477 (480)
T 1ho8_A 471 TQAIIGY 477 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998754
No 152
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=31.33 E-value=5.2e+02 Score=27.74 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCCCcchHHHHHHhhcCCCcchhHHHHHHHHhhhcc-CchHHHHHHHHHHhhhc-CccHHHHHHHHHH
Q 002083 56 EYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNE-DHDLIILIVNTIQKDLK-SDNYLIVCAALNA 133 (969)
Q Consensus 56 e~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~~~KRlgYLals~~~~~-~~dlllL~iNtLqKDL~-s~N~~vralALr~ 133 (969)
..+.|++ -.-.+.-|--+++++++.-.. +..-+ +.++ +++.++ +.+.+-+. +.++..+-++||+
T Consensus 106 ~~l~kil---~WP~~~~fPvLDLlRl~~l~p----~~~~~----~~~~~~~~~l~---~~l~~~~~~~~~p~n~ml~lR~ 171 (304)
T 3ebb_A 106 QILWKAI---NCPEDIVFPALDILRLSIKHP----SVNEN----FCNEKEGAQFS---SHLINLLNPKGKPANQLLALRT 171 (304)
T ss_dssp HHHHHHH---TSCTTTCHHHHHHHHHHTTSH----HHHHH----HHSTTTHHHHH---HHHHHTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHH---cCCHHhHHHHHHHHHHHHcCc----cHHHH----hhccccchHHH---HHHHHhcCCCCChHHHHHHHHH
Confidence 5777763 577778888899998875321 22211 1122 222222 33333333 3467789999999
Q ss_pred HHcccccchHh--------hHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 002083 134 VCKLINEETIP--------AVLPQVVELLGHSKEAVRRKAIMALHRFYQ 174 (969)
Q Consensus 134 Ls~I~~~el~~--------~l~~~V~~lL~d~~pyVRKkA~lal~kiy~ 174 (969)
+||+......+ .++..+..++.+.+..+|=.++-.++.+--
T Consensus 172 l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 172 FCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSV 220 (304)
T ss_dssp HHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 99986544332 333445555566788888887777765443
No 153
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=29.57 E-value=98 Score=31.93 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=30.8
Q ss_pred HhhccccCCCchHHHHHHHHHhhcccCCC---c-HHHHHHHHHH
Q 002083 353 LAVIDCLEDPDDTLKRKTFELLYKMTKSS---N-VEVIVDRMID 392 (969)
Q Consensus 353 ~~I~~cL~D~D~sIR~kaLdLL~~L~n~~---N-v~~IV~eLl~ 392 (969)
..+..||+.+.+.+|..+++||..+|.-. . ...|++-|-.
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~ 142 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE 142 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 56778898889999999999998888643 4 6666665543
No 154
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=23.27 E-value=1.6e+02 Score=32.91 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHHHHhh---------ChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCC---Cc-HHHHHHHHHH
Q 002083 326 SHNLKYMGIDALGRLIKT---------SPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKS---SN-VEVIVDRMID 392 (969)
Q Consensus 326 d~NlrYvaL~~L~~I~~~---------~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~---~N-v~~IV~eLl~ 392 (969)
+.++.|..+.+|..|... +|.. ...+..||..+.+.+|..+++||..+|.- +| ...|++-|-.
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~----i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~ 208 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEG----ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE 208 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSH----HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHH----HHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHH
Confidence 345666666666666533 3333 35677889999999999999999887753 45 7778777754
Q ss_pred H
Q 002083 393 Y 393 (969)
Q Consensus 393 y 393 (969)
|
T Consensus 209 ~ 209 (383)
T 3eg5_B 209 R 209 (383)
T ss_dssp H
T ss_pred H
Confidence 4
No 155
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=23.07 E-value=24 Score=24.84 Aligned_cols=12 Identities=50% Similarity=0.841 Sum_probs=9.9
Q ss_pred CccccccCCCCC
Q 002083 651 HGLRFEAYELPK 662 (969)
Q Consensus 651 ~~l~~~~y~~p~ 662 (969)
.+=+||||+.|.
T Consensus 17 ggnrfepY~Np~ 28 (30)
T 2ot8_C 17 GGNRFEPYANPT 28 (30)
T ss_pred CCcccccccCcc
Confidence 677999999874
No 156
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.90 E-value=4.8e+02 Score=25.17 Aligned_cols=85 Identities=4% Similarity=0.041 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhhChhHHHHhH------Hh-hccccCCC
Q 002083 291 NAVLYECICCVSSIYANPKLIESAADVIARFLKS-DSHNLKYMGIDALGRLIKTSPEIAEQHQ------LA-VIDCLEDP 362 (969)
Q Consensus 291 ~AVlyEaik~I~~l~~~~~ll~~ai~~L~~fL~s-~d~NlrYvaL~~L~~I~~~~P~l~~~h~------~~-I~~cL~D~ 362 (969)
.+.++|.+-.|-. . +.--+.|+..|.+-|.+ .+++..+.+|..|-.+++.....|.... .. +...+.++
T Consensus 34 w~~ileicD~In~-~--~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~ 110 (152)
T 3rru_A 34 WGQFMHICDIINT-T--QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPR 110 (152)
T ss_dssp HHHHHHHHHHHHH-S--TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGG
T ss_pred HHHHHHHHHHHhC-C--CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCC
Confidence 4566666655543 2 22234567777777764 5688889999999999988765554321 12 22233321
Q ss_pred ---chHHHHHHHHHhhccc
Q 002083 363 ---DDTLKRKTFELLYKMT 378 (969)
Q Consensus 363 ---D~sIR~kaLdLL~~L~ 378 (969)
+..+|.+.|+++..-+
T Consensus 111 ~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 111 YNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp GCCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 2346666666655433
No 157
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.85 E-value=1.9e+02 Score=27.83 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhChhHHH----HhHHhhcccc-----CCC----c--hHHHHHHHHHh
Q 002083 310 LIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAE----QHQLAVIDCL-----EDP----D--DTLKRKTFELL 374 (969)
Q Consensus 310 ll~~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P~l~~----~h~~~I~~cL-----~D~----D--~sIR~kaLdLL 374 (969)
....+.+.|.+-|..+++|++|=+|+.|..|+..-+.-|. .|...|=.|. .|| | ..||.+|=||+
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~ 125 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETI 125 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHH
Confidence 3344566777777788899999999999999976544432 3333332232 232 2 46777777777
Q ss_pred hcccCCCc
Q 002083 375 YKMTKSSN 382 (969)
Q Consensus 375 ~~L~n~~N 382 (969)
-.|-+.++
T Consensus 126 ~ll~d~~~ 133 (140)
T 1vdy_A 126 SAIFSEEN 133 (140)
T ss_dssp HHHTCCSS
T ss_pred HHHhCcCC
Confidence 66666554
No 158
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.41 E-value=3.6e+02 Score=26.07 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=63.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhCCcchhhHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhCchhhHHHH--HHH
Q 002083 148 PQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCD-NDPGVMGATLCPLFDLITVDVNSYKDLV--ISF 224 (969)
Q Consensus 148 ~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe~v~~l~~~l~~lL~D-~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv--~~l 224 (969)
..|.++-+...+---...++-+.-+.+..++.-++.+..|++.|.. .++.|+..||.+|-.+.++-...|+..+ ..|
T Consensus 19 ~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~F 98 (152)
T 3rru_A 19 HLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEF 98 (152)
T ss_dssp HHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHH
T ss_pred HHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHh
Confidence 3444444433333344567777777777777767788888888874 5888888888876555555555665544 345
Q ss_pred HH-HHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHhC
Q 002083 225 VS-ILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLG 262 (969)
Q Consensus 225 v~-iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l~ 262 (969)
++ .|..++.. .|. ...=.+-++|.++....
T Consensus 99 l~e~L~kl~~~----~~~----~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 99 VKENLVKLLNP----RYN----LPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HTTTTGGGGSG----GGC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCC----CcHHHHHHHHHHHHHHH
Confidence 53 24333321 111 11236677777777654
No 159
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=22.24 E-value=8.1e+02 Score=26.92 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=72.0
Q ss_pred cCccHHHHHHHHHHHHccccc--chH--------hhHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCc--ch------h
Q 002083 120 KSDNYLIVCAALNAVCKLINE--ETI--------PAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPS--SV------Q 181 (969)
Q Consensus 120 ~s~N~~vralALr~Ls~I~~~--el~--------~~l~~~V~~lL~d~~pyVRKkA~lal~kiy~~~Pe--~v------~ 181 (969)
+.+|..+.+-|+.++-.+.+. .++ +.+.....++|.+.+=..|+.++--|.-+...-.. .. +
T Consensus 174 ~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~ 253 (341)
T 1upk_A 174 EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKP 253 (341)
T ss_dssp TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCH
T ss_pred cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCH
Confidence 467777777777777554332 222 23444566677777666677777666666553222 11 1
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHHHh
Q 002083 182 HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALL 261 (969)
Q Consensus 182 ~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~~l 261 (969)
+.+..+..+|.|+...+..-|+.+| .+.-.||+.- +.+.+||.. -+-+||++|..+
T Consensus 254 ~nLkl~M~LL~d~sk~Iq~EAFhVF-KvFVANP~K~----~~I~~IL~~-------------------Nr~kLl~fl~~f 309 (341)
T 1upk_A 254 ENLKLMMNLLRDKSRNIQFEAFHVF-KVFVANPNKT----QPILDILLK-------------------NQAKLIEFLSKF 309 (341)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHH-HHHHHCSSCC----HHHHHHHHH-------------------THHHHHHHHHHT
T ss_pred HHHHHHHHHhcCchhchhhhhhhhe-eeeeeCCCCC----hHHHHHHHH-------------------HHHHHHHHHHhC
Confidence 3455666778888888888888765 4555566542 234455543 145788888887
Q ss_pred CC
Q 002083 262 GS 263 (969)
Q Consensus 262 ~~ 263 (969)
..
T Consensus 310 ~~ 311 (341)
T 1upk_A 310 QN 311 (341)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 160
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.98 E-value=6.2e+02 Score=25.52 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhccCCCCcCCCCCCChhHHHHHHHHHH
Q 002083 180 VQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILA 259 (969)
Q Consensus 180 v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~~lp~~y~y~~v~~PWlQikLLklL~ 259 (969)
...+++++.+.+.+ ....+|+..| .......+|+|.|++.+.+-+.+ ++.+...-..++++..
T Consensus 9 lq~yf~~It~a~~~---~~r~~aL~sL-----~~D~gL~~LlPyf~~fI~~~v~~---------nl~~l~~L~~lm~~~~ 71 (196)
T 4atg_A 9 LQLYFDKILSMIKS---DMKDIAIECL-----EKESGLQQLVPYFIQHISELILK---------SFKEAEVLKTCIALYF 71 (196)
T ss_dssp HHHHHHHHHHHHTS---TTHHHHHHHH-----HHCSSCTTTHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---HHHHHHHHHH-----hcCCChhhhHHHHHHHHHHHHHh---------ccCCHHHHHHHHHHHH
Q ss_pred HhCCC-----ChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcC--CCh
Q 002083 260 LLGSG-----DKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSI-----YANPKLIESAADVIARFLKS--DSH 327 (969)
Q Consensus 260 ~l~~~-----d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l-----~~~~~ll~~ai~~L~~fL~s--~d~ 327 (969)
.+-.. ++..-..|-.+|.-++.+.-... ++.-.|++++..+ ...+.+..+..+.+.+.+.+ +..
T Consensus 72 ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~----~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l 147 (196)
T 4atg_A 72 SLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD----DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSE 147 (196)
T ss_dssp HHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCH----HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHcCCCCChHHHHHHHHHHHHHHHHhcccCHH----HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCCh
Q ss_pred hHHHHHHHHHHHH
Q 002083 328 NLKYMGIDALGRL 340 (969)
Q Consensus 328 NlrYvaL~~L~~I 340 (969)
...|=|+..|..+
T Consensus 148 ~t~YGAi~GL~~l 160 (196)
T 4atg_A 148 DSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
No 161
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.66 E-value=5.6e+02 Score=30.30 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=60.7
Q ss_pred HHHhhhcCccHHHHHHHHHHHHcc----cc---------cchHhhHHHHHHHhc-CCCChHHHHHHHHHHHHHHhhCCcc
Q 002083 114 TIQKDLKSDNYLIVCAALNAVCKL----IN---------EETIPAVLPQVVELL-GHSKEAVRRKAIMALHRFYQKSPSS 179 (969)
Q Consensus 114 tLqKDL~s~N~~vralALr~Ls~I----~~---------~el~~~l~~~V~~lL-~d~~pyVRKkA~lal~kiy~~~Pe~ 179 (969)
.+..=|+++.+.+..-+|..+..+ .. .+....+...+.+.+ .+++..+||+|..++.+++..+|+.
T Consensus 321 ~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~~e 400 (596)
T 4f52_E 321 HIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLDSQ 400 (596)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBCHH
T ss_pred HHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCChH
Confidence 566667788777777677766532 11 112223333444443 4799999999999999999999875
Q ss_pred hhhHHHHHHHhhc-CCChhHHHHHHHHHHHh
Q 002083 180 VQHLVSNFRKRLC-DNDPGVMGATLCPLFDL 209 (969)
Q Consensus 180 v~~l~~~l~~lL~-D~D~~Vv~aAl~~L~ei 209 (969)
-+ ...|+.+|. ..+++|.+.++..+-+.
T Consensus 401 ~R--~~iL~~LL~~~~~~~v~~~lI~~~Kde 429 (596)
T 4f52_E 401 GK--YTLFRCLLNTSNHSGVEAFIIQNIKNQ 429 (596)
T ss_dssp HH--HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 43 234455553 46888888877665443
Done!