Query 002084
Match_columns 969
No_of_seqs 226 out of 1101
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 16:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 1.8E-96 4E-101 813.8 78.2 882 1-951 1-940 (982)
2 KOG2081 Nuclear transport regu 100.0 2.8E-72 6.2E-77 600.8 50.8 549 26-622 2-557 (559)
3 KOG2021 Nuclear mRNA export fa 100.0 2.9E-53 6.2E-58 461.0 58.3 761 7-815 3-828 (980)
4 COG5101 CRM1 Importin beta-rel 100.0 2E-52 4.2E-57 445.1 63.1 852 6-914 13-958 (1053)
5 KOG2023 Nuclear transport rece 100.0 6.8E-36 1.5E-40 322.0 42.2 710 8-914 14-775 (885)
6 KOG2020 Nuclear transport rece 100.0 9.2E-30 2E-34 301.2 61.2 854 4-914 7-937 (1041)
7 KOG2171 Karyopherin (importin) 100.0 1.3E-27 2.8E-32 276.7 50.0 601 6-735 3-614 (1075)
8 KOG1241 Karyopherin (importin) 99.9 6.8E-20 1.5E-24 202.7 62.5 597 19-737 12-648 (859)
9 KOG1991 Nuclear transport rece 99.9 2.3E-17 5E-22 188.5 64.7 630 6-737 3-692 (1010)
10 COG5215 KAP95 Karyopherin (imp 99.8 1.2E-14 2.6E-19 155.9 58.2 610 9-737 6-649 (858)
11 KOG1992 Nuclear export recepto 99.7 3.5E-11 7.7E-16 135.4 57.6 719 5-851 3-792 (960)
12 KOG1410 Nuclear transport rece 99.6 1.7E-09 3.7E-14 118.9 61.1 800 3-854 1-939 (1082)
13 PF08389 Xpo1: Exportin 1-like 99.6 3.3E-15 7.1E-20 145.0 13.1 146 104-263 1-148 (148)
14 COG5656 SXM1 Importin, protein 99.6 4.2E-08 9E-13 109.8 62.2 623 19-736 14-690 (970)
15 KOG2274 Predicted importin 9 [ 99.5 1.2E-07 2.5E-12 108.8 57.4 624 19-815 15-697 (1005)
16 PF08767 CRM1_C: CRM1 C termin 99.3 3.2E-10 7E-15 122.9 22.8 176 722-914 66-244 (319)
17 PF03810 IBN_N: Importin-beta 98.7 4.2E-08 9.1E-13 82.9 6.7 67 28-98 1-76 (77)
18 KOG2171 Karyopherin (importin) 98.6 0.00064 1.4E-08 81.6 40.4 372 414-832 94-483 (1075)
19 KOG1993 Nuclear transport rece 98.6 0.0041 8.8E-08 71.6 58.6 169 10-196 3-180 (978)
20 KOG0915 Uncharacterized conser 97.5 0.25 5.5E-06 61.6 34.4 173 374-573 987-1175(1702)
21 COG5657 CSE1 CAS/CSE protein i 97.2 0.84 1.8E-05 54.4 44.8 145 5-160 3-154 (947)
22 KOG2023 Nuclear transport rece 97.0 1.1 2.4E-05 51.4 40.9 292 526-853 514-818 (885)
23 PF08506 Cse1: Cse1; InterPro 96.7 0.17 3.6E-06 56.3 20.8 200 328-551 141-370 (370)
24 COG5215 KAP95 Karyopherin (imp 96.7 1.5 3.3E-05 49.4 31.1 47 525-572 362-414 (858)
25 KOG1824 TATA-binding protein-i 96.3 3.8 8.3E-05 49.2 49.1 207 5-251 44-308 (1233)
26 PF03378 CAS_CSE1: CAS/CSE pro 94.8 4.1 8.8E-05 46.5 21.6 242 565-851 22-271 (435)
27 PF03378 CAS_CSE1: CAS/CSE pro 94.6 5.9 0.00013 45.2 22.4 160 677-854 65-231 (435)
28 KOG1824 TATA-binding protein-i 93.6 23 0.00049 43.1 51.6 579 47-737 9-621 (1233)
29 KOG0212 Uncharacterized conser 92.8 22 0.00047 40.7 25.7 275 525-848 80-402 (675)
30 COG5181 HSH155 U2 snRNP splice 90.8 25 0.00053 40.6 19.3 159 530-735 766-926 (975)
31 KOG2274 Predicted importin 9 [ 90.0 50 0.0011 40.2 21.8 167 675-856 522-693 (1005)
32 PRK09687 putative lyase; Provi 89.8 31 0.00068 36.9 19.8 208 9-268 25-250 (280)
33 PF02985 HEAT: HEAT repeat; I 89.7 0.47 1E-05 31.6 3.3 29 530-558 1-31 (31)
34 PF08767 CRM1_C: CRM1 C termin 87.3 26 0.00057 38.3 16.8 168 211-395 42-224 (319)
35 PF12348 CLASP_N: CLASP N term 85.6 15 0.00033 37.9 13.5 138 450-603 17-163 (228)
36 PF12755 Vac14_Fab1_bd: Vacuol 85.3 4.5 9.7E-05 35.4 7.7 39 524-562 22-62 (97)
37 KOG1242 Protein containing ada 84.8 86 0.0019 36.6 29.2 214 377-628 208-425 (569)
38 PF01602 Adaptin_N: Adaptin N 84.3 95 0.0021 36.7 29.0 360 481-947 113-484 (526)
39 KOG1991 Nuclear transport rece 84.1 1.2E+02 0.0026 37.6 57.5 119 212-341 105-239 (1010)
40 PF12348 CLASP_N: CLASP N term 83.5 43 0.00094 34.5 15.8 140 698-853 65-207 (228)
41 KOG0213 Splicing factor 3b, su 83.1 1.1E+02 0.0024 36.5 37.8 41 377-432 791-831 (1172)
42 PF10508 Proteasom_PSMB: Prote 80.7 1.3E+02 0.0027 35.5 31.0 131 453-602 51-191 (503)
43 PF08167 RIX1: rRNA processing 79.6 34 0.00073 33.4 12.3 105 789-913 36-142 (165)
44 PF01602 Adaptin_N: Adaptin N 78.5 1.5E+02 0.0032 35.1 36.9 426 18-559 52-486 (526)
45 KOG0166 Karyopherin (importin) 78.2 1.4E+02 0.003 34.6 18.1 140 541-715 124-266 (514)
46 KOG1241 Karyopherin (importin) 77.3 1.7E+02 0.0037 35.2 50.8 328 451-834 337-691 (859)
47 COG5101 CRM1 Importin beta-rel 76.7 1.4E+02 0.003 34.9 17.1 227 680-913 189-451 (1053)
48 PF13513 HEAT_EZ: HEAT-like re 76.5 5.1 0.00011 30.6 4.5 50 504-554 3-55 (55)
49 COG5181 HSH155 U2 snRNP splice 75.9 92 0.002 36.2 15.4 168 414-604 744-916 (975)
50 KOG1059 Vesicle coat complex A 75.9 1.8E+02 0.0039 34.7 21.3 53 504-560 160-214 (877)
51 PF12460 MMS19_C: RNAPII trans 75.5 1.5E+02 0.0034 33.8 32.7 59 792-853 337-395 (415)
52 PF05918 API5: Apoptosis inhib 75.2 66 0.0014 37.7 14.7 46 511-559 44-91 (556)
53 PF12755 Vac14_Fab1_bd: Vacuol 73.2 17 0.00037 31.8 7.4 82 458-547 4-88 (97)
54 cd00020 ARM Armadillo/beta-cat 72.6 5.2 0.00011 36.1 4.4 93 453-556 20-120 (120)
55 PTZ00429 beta-adaptin; Provisi 71.5 2.6E+02 0.0056 34.6 26.4 96 452-562 232-332 (746)
56 PF13513 HEAT_EZ: HEAT-like re 67.9 7 0.00015 29.9 3.5 54 454-515 1-54 (55)
57 KOG2753 Uncharacterized conser 67.5 1.4E+02 0.0031 32.1 13.6 75 526-603 104-179 (378)
58 PF13646 HEAT_2: HEAT repeats; 66.7 34 0.00075 28.8 8.0 55 10-71 2-56 (88)
59 KOG0168 Putative ubiquitin fus 66.2 3.2E+02 0.0069 33.5 19.6 153 526-717 211-366 (1051)
60 PF08167 RIX1: rRNA processing 64.5 23 0.0005 34.5 7.2 80 45-133 30-110 (165)
61 KOG1020 Sister chromatid cohes 63.7 4.6E+02 0.01 34.5 33.0 57 208-270 828-886 (1692)
62 PF08064 UME: UME (NUC010) dom 56.1 1E+02 0.0022 27.6 9.1 90 528-623 10-105 (107)
63 PF13646 HEAT_2: HEAT repeats; 53.9 28 0.0006 29.4 5.1 57 8-70 31-87 (88)
64 KOG2081 Nuclear transport regu 53.6 4.2E+02 0.0091 30.9 24.3 216 681-915 151-382 (559)
65 KOG4653 Uncharacterized conser 50.4 5.8E+02 0.012 31.5 16.6 177 511-726 746-929 (982)
66 KOG2956 CLIP-associating prote 50.2 4.3E+02 0.0093 30.1 14.3 172 511-728 315-491 (516)
67 PF11707 Npa1: Ribosome 60S bi 46.6 4.2E+02 0.0091 29.1 14.2 141 790-955 68-246 (330)
68 KOG2160 Armadillo/beta-catenin 46.5 4.3E+02 0.0094 29.0 13.7 146 450-606 93-246 (342)
69 smart00802 UME Domain in UVSB 44.3 2.2E+02 0.0047 25.5 9.2 90 527-622 9-104 (107)
70 KOG1059 Vesicle coat complex A 39.5 7.7E+02 0.017 29.9 33.0 216 83-358 139-364 (877)
71 PF14500 MMS19_N: Dos2-interac 36.8 5.4E+02 0.012 27.2 14.0 238 502-773 13-255 (262)
72 KOG0915 Uncharacterized conser 35.6 1.2E+03 0.026 31.0 32.6 111 431-557 952-1069(1702)
73 PF12717 Cnd1: non-SMC mitotic 34.6 94 0.002 30.7 6.1 47 511-557 7-55 (178)
74 PTZ00429 beta-adaptin; Provisi 34.0 1E+03 0.022 29.6 40.9 127 17-159 77-209 (746)
75 KOG2021 Nuclear mRNA export fa 33.5 9.7E+02 0.021 29.3 29.8 52 505-557 210-261 (980)
76 PF10441 Urb2: Urb2/Npa2 famil 32.7 5.6E+02 0.012 26.3 13.3 48 567-616 152-200 (223)
77 PF08623 TIP120: TATA-binding 30.4 4.1E+02 0.0089 26.0 9.4 103 790-915 39-141 (169)
78 PF08506 Cse1: Cse1; InterPro 29.5 4.4E+02 0.0096 29.5 10.9 123 705-838 230-361 (370)
79 PF12030 DUF3517: Domain of un 29.2 5.2E+02 0.011 28.5 11.0 75 831-916 246-324 (337)
80 PF14911 MMS22L_C: S-phase gen 29.0 8.5E+02 0.018 27.2 25.3 94 791-891 224-322 (373)
81 PF08064 UME: UME (NUC010) dom 28.8 4.2E+02 0.0091 23.6 9.6 51 679-734 52-103 (107)
82 KOG1992 Nuclear export recepto 28.6 1.2E+03 0.026 28.8 19.3 244 526-814 545-800 (960)
83 KOG1062 Vesicle coat complex A 28.3 1.2E+03 0.026 28.7 16.2 177 679-906 138-314 (866)
84 PRK10236 hypothetical protein; 28.2 1.1E+02 0.0024 31.3 5.3 60 7-77 20-85 (237)
85 COG5240 SEC21 Vesicle coat com 27.9 1.1E+03 0.023 27.9 14.2 65 5-71 300-365 (898)
86 PF12460 MMS19_C: RNAPII trans 27.2 9.7E+02 0.021 27.3 28.7 158 453-623 203-374 (415)
87 PF08389 Xpo1: Exportin 1-like 27.1 54 0.0012 30.8 2.9 42 510-551 107-148 (148)
88 KOG1943 Beta-tubulin folding c 27.1 4.4E+02 0.0096 33.3 10.8 137 458-602 446-613 (1133)
89 PF11864 DUF3384: Domain of un 26.9 1E+03 0.023 27.5 15.4 61 791-854 147-208 (464)
90 PLN03200 cellulose synthase-in 26.2 2E+03 0.043 30.6 36.4 501 5-625 379-934 (2102)
91 KOG0166 Karyopherin (importin) 25.1 1.1E+03 0.025 27.4 16.4 132 456-603 127-269 (514)
92 PF09184 PPP4R2: PPP4R2; Inte 23.9 4.3E+02 0.0094 28.4 9.2 105 6-118 2-110 (288)
93 cd00020 ARM Armadillo/beta-cat 23.7 3E+02 0.0065 24.1 7.2 96 13-119 12-119 (120)
94 PF13251 DUF4042: Domain of un 22.5 6.5E+02 0.014 25.0 9.4 89 537-629 48-156 (182)
95 PF01603 B56: Protein phosphat 22.4 1.2E+03 0.025 26.6 20.3 57 790-849 267-323 (409)
96 TIGR03504 FimV_Cterm FimV C-te 21.4 1.1E+02 0.0024 22.3 2.8 32 3-34 12-43 (44)
97 KOG0213 Splicing factor 3b, su 20.4 1.6E+03 0.035 27.4 43.2 135 410-558 726-872 (1172)
98 PF04388 Hamartin: Hamartin pr 20.3 1.4E+03 0.03 28.0 13.6 124 698-853 16-141 (668)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-96 Score=813.81 Aligned_cols=882 Identities=18% Similarity=0.257 Sum_probs=693.6
Q ss_pred CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCC
Q 002084 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (969)
Q Consensus 1 ~~~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~ 80 (969)
|+.+.+++|+++|..||.+++++.++.+++||++.|+||+||.++++||+.+++ .++|||||.||+.||+++|++
T Consensus 1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~ 75 (982)
T KOG2022|consen 1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE 75 (982)
T ss_pred CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence 777789999999999999999999999999999999999999999999998775 588999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCC----CcchHHHHHHHh
Q 002084 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQ----DNGNMAVLEMLT 154 (969)
Q Consensus 81 l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~----~~~~~~lL~~L~ 154 (969)
.|++++..|+..++..+.+++.||+.|.+|+|.+|+.+.+++. .||++|.+++..++.+... ...+.++|+.|+
T Consensus 76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls 155 (982)
T KOG2022|consen 76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS 155 (982)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999985 5999999999999864211 124689999999
Q ss_pred hchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccc
Q 002084 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (969)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~ 234 (969)
.+|||..+. + ++..+|..++.++......+..++..++....+...+..+-..+..+++|+.+|++|... +.
T Consensus 156 ~~p~e~q~~---~--l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~---~~ 227 (982)
T KOG2022|consen 156 FMPAEFQHV---T--LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISL---TG 227 (982)
T ss_pred cCcHhhhhc---c--chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcc---cc
Confidence 999999643 2 677788999999999999999988877766432211001113568999999999997632 32
Q ss_pred hhhcccchHHHHHhhcCC--CCcHHHHHHHHH---------------HHHhcCC--Chh---HHHHhhhhh-hHHhhh-h
Q 002084 235 GSLAAHPLLNFVFNSLQV--QSSFDVAIEVLV---------------ELVGRHE--GLP---QALLCRVPF-LKELLL-L 290 (969)
Q Consensus 235 ~~i~~~~ll~~~~~~L~~--~~~~~~a~~~l~---------------ei~~~~~--~~~---~~l~~~~~~-l~~~~~-~ 290 (969)
- .....+..++..+.. ...++++-+||. ..+...+ .|. ..|++...+ +++.-. .
T Consensus 228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~ 305 (982)
T KOG2022|consen 228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI 305 (982)
T ss_pred c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 2 223345555555541 122233322221 1111110 122 223333333 222110 0
Q ss_pred hhhccCc--hhHHhhHHHHHHHHhhhhhHHHHhc------ChhHHHHHHHHHhcccCCCCCchhhh----hhHHHHHHHH
Q 002084 291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEIAD----STLQFWSTLA 358 (969)
Q Consensus 291 ~~~~~~d--~d~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~lL~~~~~p~~d~~v~~----~~~~FW~~l~ 358 (969)
....+.| +|....++++++..+|++.+.+.++ ++.+.++++.|+.|+++||+ |+|-| .|++|||+|+
T Consensus 306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~ 384 (982)
T KOG2022|consen 306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ 384 (982)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence 1334555 7788899999999999999998764 23457999999999999994 66544 6999999999
Q ss_pred HHhhccchhhhhhhhhhhhhhH-HHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHH--
Q 002084 359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-- 435 (969)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~-- 435 (969)
|++..+..++. +.....|+ |+|.+|++++++|+.+|.++....|..|+++.|++||++++|+++++|.++|+..
T Consensus 385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~ 461 (982)
T KOG2022|consen 385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLD 461 (982)
T ss_pred HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99987655442 33445565 9999999999999999998766679999999999999999999999999999542
Q ss_pred HHHHHHhhhhcCC-CCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 002084 436 FIQKVFFGSWGSA-NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIG 514 (969)
Q Consensus 436 ~l~~l~~~~~~~~-~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig 514 (969)
++...++++..+. ..+.+|+..|+|+|++.++++.+..+++ +++..++...++.+....+ +.+.. |++.+||
T Consensus 462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~n--~ql~~-Tss~~ig 534 (982)
T KOG2022|consen 462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAPN--PQLLS-TSSDLIG 534 (982)
T ss_pred HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccCC--hhHHH-HHHHHHH
Confidence 3333344443332 2456799999999999999999986554 6777777776654322110 11333 5579999
Q ss_pred hhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHhcCCChhhHHHHHH
Q 002084 515 SYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVG 593 (969)
Q Consensus 515 ~ys~wl~~~p~~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~e 593 (969)
.|+.|++.||.||.+.++.|++|+++++....|..++++||++|+.+|.+ +.+.|.... +.+.+.+..+.+|.+++.
T Consensus 535 s~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~p--y~d~~~a~~~e~l~~~~~~~S~~~klm~ 612 (982)
T KOG2022|consen 535 SLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLDP--YADQFSAVCYEVLNKSNAKDSDRLKLMK 612 (982)
T ss_pred HHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCch--HHHHHHHHHHHHhcccccCchHHHHHHH
Confidence 99999999999999999999999999988888899999999999999953 777666655 555668888999999999
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCC---
Q 002084 594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN--- 670 (969)
Q Consensus 594 ai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~--- 670 (969)
+||+|++.+.+++ +..|+.++++|++++++.++....+ +++.. + +..-.+.+++++|.++..+.+.-
T Consensus 613 sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~-----~~e~~---l-~~~~~l~~iS~LftSL~~~~~~~d~d 682 (982)
T KOG2022|consen 613 SIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGID-----DQENH---L-RIAFQLNTISALFTSLINKKDIIDTD 682 (982)
T ss_pred HHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCC-----CHHHH---H-HHHHHHHHHHHHHhccCCCCcccccc
Confidence 9999999999766 6899999999999999998776532 23222 1 12334677778888877544310
Q ss_pred CCC-------CchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHHHHhhhhhcCc
Q 002084 671 PAG-------DDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQNH 742 (969)
Q Consensus 671 ~~~-------~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~-~p~l~~l~~~l~~~~~~~~~~ 742 (969)
.+. .-|.+.++++++|+++.+++ .|.++.+++|++|.++++++++++.++ .|++|.++.++.+ |... +.
T Consensus 683 ~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~~ 759 (982)
T KOG2022|consen 683 QPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-CL 759 (982)
T ss_pred chhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-hH
Confidence 001 12677899999999999999 899999999999999999999998887 9999999999988 7643 34
Q ss_pred ccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchH
Q 002084 743 ECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE 822 (969)
Q Consensus 743 ~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~ 822 (969)
..-+.+...++..+..++.+.+.+.+.+..+.+.. +..+.+. .+.++||+.+.+|++++.++++.|+.+.++..++-.
T Consensus 760 a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts 837 (982)
T KOG2022|consen 760 AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTS 837 (982)
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHH
Confidence 44567778888777777788888877666655554 5556553 489999999999999999999999999986544555
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccch
Q 002084 823 VSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRV 902 (969)
Q Consensus 823 ~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~ 902 (969)
.++.|++..++.+|+.+++++++||+.|++.+++ ++...+.+++.+.|+.|+.++|+|++|.++||.+
T Consensus 838 ~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~l 905 (982)
T KOG2022|consen 838 LILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTL 905 (982)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccchh
Confidence 5777999999999999999999999998876553 2357899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhcccccccccChHHHHHHHHHHHhhhccccccc
Q 002084 903 HKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGFG 951 (969)
Q Consensus 903 ~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~l~~~~~~~~~~ 951 (969)
+.++|+|++|+ ++++..++.|+.++| +.|+..+.|
T Consensus 906 d~~aDIL~al~-------------~k~~se~r~wl~~~l-q~~gfPs~~ 940 (982)
T KOG2022|consen 906 DALADILLALN-------------AKFFSETRTWLKAVL-QIPGFPSAG 940 (982)
T ss_pred HHHHHHHHHHH-------------HhhhHHHHHHHHHHh-cCCCCCccc
Confidence 99999999999 689999999999999 566655555
No 2
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-72 Score=600.79 Aligned_cols=549 Identities=25% Similarity=0.399 Sum_probs=481.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHHHHHHHHHHhcCCCh
Q 002084 26 VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPP 105 (969)
Q Consensus 26 ~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~ 105 (969)
.+|++||++||+|+++|++|.++|... .+.+..+|||||++.||+++|++||+..+.++|++++.|+.....+++
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-----~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~ 76 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-----CDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPD 76 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCc
Confidence 579999999999999999999999874 468999999999999999999999999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHchhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhh
Q 002084 106 QLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185 (969)
Q Consensus 106 ~v~~kL~~aLa~l~l~~~~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~ 185 (969)
.+++||+.++|++++++++|.|+|.+++...++.. ...+.+|++|+++|||+.+.+. + ...+||+++++++...
T Consensus 77 ~i~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~~---~~~~~lLeiL~VlPEE~~~~~~-~--~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 77 VIRTQLAVAVAALALHMPEWVNPIFELVRALSNKH---PAVPILLEILKVLPEETRDIRL-T--VGANRRHEFIDELAAQ 150 (559)
T ss_pred hHHHHHHHHHHHHHHHhHhhcchHHHHHHHhhcCC---ccHHHHHHHHHhCcHhhcchhh-h--hhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999998742 3378999999999999975533 2 6788999999999999
Q ss_pred hhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcc-cchHHHHHhhcCCCCcHHHHHHHHH
Q 002084 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA-HPLLNFVFNSLQVQSSFDVAIEVLV 264 (969)
Q Consensus 186 ~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~-~~ll~~~~~~L~~~~~~~~a~~~l~ 264 (969)
.+.++.++..+++.... +..+...++|+|+.||.+++ .++.+.+.. .+++..+|..++++++.+.|++|++
T Consensus 151 ~~~~L~~l~~lLe~~~l-----~~~~~l~~Vl~~l~SWl~~~---~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic 222 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDL-----KSSDDLEQVLRCLGSWLRLH---VFPPDQVLASFPLITLAFRSLSDDELHEEATECIC 222 (559)
T ss_pred HHHHHHHHHHHHhhcCC-----ChhhHHHHHHHHHhhhhhhc---cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHH
Confidence 99999999999887543 22467899999999999987 678888754 4999999999999999999999999
Q ss_pred HHHhcCC------ChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhcChhHHHHHHHHHhccc
Q 002084 265 ELVGRHE------GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA 338 (969)
Q Consensus 265 ei~~~~~------~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~lL~~~~ 338 (969)
.+++... .+...++..+..+...++ .++..+|.|...++||+|+++||++...+..++++++.+++.+|.+++
T Consensus 223 ~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~-~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~ 301 (559)
T KOG2081|consen 223 ALLYCSLDRSEGLPLAAILFIGVIILETAFH-LAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG 301 (559)
T ss_pred HHHHHhhhhhccCchhHHHhccccccchHHH-HhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc
Confidence 9888542 244445544444444444 477889999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHH
Q 002084 339 FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM 418 (969)
Q Consensus 339 ~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~ 418 (969)
|+ |++|.+.+|.|||.+++.++..++. .....|+|+|.++++.+.+|++||++.+ +..|+.++|.+||.
T Consensus 302 h~--~~evie~SF~fW~~lse~l~~~~~~------~~~~~frpy~~rLvs~l~~h~qlp~~~~---~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 302 HN--DTEVIEASFNFWYSLSEELTLTDDD------EALGIFRPYFLRLVSLLKRHVQLPPDQF---DLPEEESEFFEFRL 370 (559)
T ss_pred CC--chhhhhhhHHhhhhhHHHHhccccH------HHHHHhHHHHHHHHHHHHHHccCCCccc---cCccchhHHHHHHH
Confidence 98 7999999999999999998865543 4667999999999999999999999643 34578899999999
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhh
Q 002084 419 NLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (969)
Q Consensus 419 ~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~ 498 (969)
.++|+++|+.+++|.+.++++++.++.+ ++.+|+..||+||+|++++.+++.+++. .+|.|++++.++|...+
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e---~~~~We~~EAaLF~l~~~~~~~~~~e~~-i~pevl~~i~nlp~Q~~--- 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE---NNASWEEVEAALFILRAVAKNVSPEENT-IMPEVLKLICNLPEQAP--- 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc---CCCchHHHHHHHHHHHHHhccCCccccc-hHHHHHHHHhCCccchh---
Confidence 9999999999999999999999988864 4678999999999999999999976663 25777777777776543
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHH
Q 002084 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEAL 578 (969)
Q Consensus 499 ~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l 578 (969)
+|||++ .++|+|++|+++||+.+.++++|++.++...+++++|+.++.++|..|+..+. .+.+.+..+...+
T Consensus 444 -----~~~ts~-ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~--~l~~~~~~l~~~l 515 (559)
T KOG2081|consen 444 -----LRYTSI-LLLGEYSEWVEQHPELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMT--CLIPSLLELIRSL 515 (559)
T ss_pred -----HHHHHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 689885 99999999999999999999999999999888999999999999999999884 4999999999988
Q ss_pred HhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Q 002084 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (969)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~ 622 (969)
....++.+... +++|++.||..+|.++ .+.+++.++.|.+..
T Consensus 516 ~~~~~~~e~a~-l~~~~s~i~~~lp~~k-~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 516 DSTQINEEAAC-LLQGISLIISNLPAHK-AKIALEELCEPQLRN 557 (559)
T ss_pred HHHhccHHHHH-HHHHHHHHHhcCCHhh-hhHHHHHHhhHHHhc
Confidence 88777877777 9999999999999876 588999999987754
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-53 Score=460.98 Aligned_cols=761 Identities=16% Similarity=0.158 Sum_probs=560.3
Q ss_pred HHHHHHHHHhccC-CChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHH
Q 002084 7 IKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (969)
Q Consensus 7 ~~v~~ai~~ly~~-~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~ 85 (969)
++|+|||.+...+ .|+..|+||-+|+++++.||.||++|.++|.... .++.+|||+.|||..+++...++.+..+
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~t----s~d~vkf~clqtL~e~vrekyne~nl~e 78 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINET----SNDLVKFYCLQTLIELVREKYNEANLNE 78 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhc----ccchhhhhhHHHHHHHHHHhhccCCHHH
Confidence 3788999999876 7999999999999999999999999999998753 4689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--c----CCChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084 86 KDALLNALLVAAKRF--S----SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (969)
Q Consensus 86 ~~~Lr~~Ll~~l~~~--~----~~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~ 157 (969)
.+.+|.++++|+... . .+|.+|+||++..|+.|+..++ .|++++.|++.-++.++ ..++....+.+|-.+.
T Consensus 79 lqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s-~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 79 LQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS-AISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc-chhhHHHHHHHHHHhh
Confidence 999999999999752 2 2588999999999999999876 69999999999997642 2345789999999999
Q ss_pred hccccccccccCCCHHHHHHHHHHHHh-hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchh
Q 002084 158 EEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (969)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~ 236 (969)
.|+.|...+++.-...+-+.+++.|++ +.+.+.+...+++...... .++.+...+|+|+++||. ||+.+.
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~----~npgl~~~cLdc~g~fVS-----WIdInL 228 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI----VNPGLINSCLDCIGSFVS-----WIDINL 228 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhh-----hhhhhh
Confidence 999988776643222234457777877 6888888887776543211 134688899999999998 778888
Q ss_pred hcccchHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChh-H-HHHh---hhhhhHHhhhhhhhccCchhHHhhHHHHHHHH
Q 002084 237 LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLP-Q-ALLC---RVPFLKELLLLPALTDGDEKVIGGLACLMSEI 311 (969)
Q Consensus 237 i~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~-~-~l~~---~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~ 311 (969)
+++.++++++++.|..++++.+|++|+.+++++.++-. + .+++ +...+.. |+ .+.+.+|.|....++++++.+
T Consensus 229 IaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg-~~-s~dq~~d~df~e~vskLitg~ 306 (980)
T KOG2021|consen 229 IANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG-YH-SADQMDDLDFWESVSKLITGF 306 (980)
T ss_pred hhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh-hh-ccccccCchHHHHHHHHHhhc
Confidence 99999999999999999999999999999999987632 2 1222 2222221 12 355568889999999999999
Q ss_pred hhhhhHHHHh----cC--------hhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhh
Q 002084 312 GQAAPSLIVE----AS--------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF 379 (969)
Q Consensus 312 ~e~~~~~l~~----~~--------~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~ 379 (969)
|-+....+.+ .+ ...+..+.+|++..++. ++++..-+++||+++...+-+.. ...+..
T Consensus 307 gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~--------~ls~~q 376 (980)
T KOG2021|consen 307 GVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLK--------ALSSPQ 376 (980)
T ss_pred ceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcc--------cccchh
Confidence 9877655543 11 13357788999999885 56788899999999877664322 233445
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCC-C-CCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcC--CCCCCChh
Q 002084 380 FSVFSALLDALLLRAQVDESSFND-D-GMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGS--ANVPIPWK 455 (969)
Q Consensus 380 ~~~~~~l~~~l~~k~~~p~~~~~~-~-~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~--~~~~~~W~ 455 (969)
+..+.+++.++++|+.|++.-+.+ + .+.||++.|.+||+++. .+++....++++.++..+-+.+.+. .....+|+
T Consensus 377 k~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk-~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swq 455 (980)
T KOG2021|consen 377 KVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK-NFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQ 455 (980)
T ss_pred hccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 556788899999999998764322 2 22367788999999998 6667777778876554443332211 12346799
Q ss_pred HhHHHHHHHHhhhhccccCCccc---chh---HHHH---HHH--HhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCh
Q 002084 456 EVETKLFALNVVSEVVLQEGQAF---DFS---VIMQ---LVA--VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (969)
Q Consensus 456 ~~Ea~Lf~l~~iae~~~~~~~~~---~l~---~i~~---ll~--~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p 524 (969)
.+|+++|.++.++|+.+.+.-.. ++. .++. ++. .++.|++.. ..+.+ |.+|.||..||..++
T Consensus 456 evE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~l----VqLlf---mE~ivRY~kff~~es 528 (980)
T KOG2021|consen 456 EVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHEL----VQLLF---MELIVRYNKFFSTES 528 (980)
T ss_pred HHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchH----HHHHH---HHHHHHHHHHHhcch
Confidence 99999999999999998431110 111 1222 221 356676632 22444 899999999999999
Q ss_pred hchHHHHHHHH--HhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHH------h----cCCChhhHHH
Q 002084 525 TNARPLLLFLA--AGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALE------K----RHLPLEDEEE 590 (969)
Q Consensus 525 ~~L~~~l~~l~--~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~------~----~~l~~~~~~~ 590 (969)
++++.++++++ +|+++.. |+.+|++-|.++.+.-++.+. |+..+++..+.+.+. + ...+.+++..
T Consensus 529 q~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv-pfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqly 607 (980)
T KOG2021|consen 529 QKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV-PFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLY 607 (980)
T ss_pred hhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCcCCCcCccccccccccccce
Confidence 99999999998 6888754 999999999999999999986 444456666666552 1 2234678999
Q ss_pred HHHHHHHHhcc--CCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCC
Q 002084 591 VVGAISLILGS--VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLP 668 (969)
Q Consensus 591 l~eai~~ii~~--lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~ 668 (969)
++|++|.+|.. .|.++ ...++..+++|.+.+.......+.-.+....|+.. ..+...+-.+++.-+++.....
T Consensus 608 IfEtiGviI~l~n~paE~-qaay~~~litpl~~~~~igl~~a~lasde~~pv~I----a~c~~~lmaig~lakgf~~rlv 682 (980)
T KOG2021|consen 608 IFETIGVIITLNNSPAEL-QAAYANTLITPLILDQIIGLLFAQLASDEASPVVI----AECHHILMAIGTLAKGFHIRLV 682 (980)
T ss_pred eeecceEEEeCCCCCHHH-HHHHHhcccChHHHHHHHHHHHHHHhccccccHHH----HHHHHHHHHHHHHhhcccccCc
Confidence 99999999965 67666 58899999999987755433322111112223332 2223334444555566554331
Q ss_pred CCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHH
Q 002084 669 TNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRT 748 (969)
Q Consensus 669 ~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l 748 (969)
.. .+-.+..++.++..++-.++. .++..+.+..++...++|++.++|..+.|++|.+++.++.+-... ....|+.+
T Consensus 683 t~--~qvg~~~vf~~~ldvil~~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~k-Emvdfl~f 758 (980)
T KOG2021|consen 683 TE--NQVGNMVVFSNILDVILVTLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLK-EMVDFLGF 758 (980)
T ss_pred ch--hcccHHHHHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHH-HHHHHHHH
Confidence 11 112244577888888888887 588889999999999999999999999999999999998765433 46679999
Q ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCC-------CcHHHHHHHHHHHHHHhhhHHHHh
Q 002084 749 ASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQE-------PDLVEAYTNFASTFVRTSRKEVLA 815 (969)
Q Consensus 749 ~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~-------pDl~~~~f~l~~~~l~~~p~~ll~ 815 (969)
++++++.|+. ++.+.+.+|+..+.... +..+... +...+ -++..+|+.|+..++.+--..++.
T Consensus 759 lsQLihkfk~--~~~~ilnqmlppll~rI-fsvi~r~-a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~sila 828 (980)
T KOG2021|consen 759 LSQLIHKFKT--DCYQILNQMLPPLLNRI-FSVIERI-AKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILA 828 (980)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHhccc-CCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeee
Confidence 9999999996 56777888888776665 5555422 22233 345677999998888765444443
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-52 Score=445.10 Aligned_cols=852 Identities=13% Similarity=0.144 Sum_probs=594.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHH
Q 002084 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (969)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~ 85 (969)
++-+.+.|.++|.+ +...+++|++.|.+||..|+||+-++.+|+... .++.+|.|.+.|..-|.++|.-+|+++
T Consensus 13 iallDkVVttfyqg-~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-----~pqskyiALs~LdklIttkWkllp~~~ 86 (1053)
T COG5101 13 IALLDKVVTTFYQG-DGRKQEQAQRILTKFQELPDAWTKADYILNNSK-----LPQSKYIALSLLDKLITTKWKLLPEGM 86 (1053)
T ss_pred HHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-----CcchhhhHHHHHHHHHHhhhhhCCcHH
Confidence 55678899999964 567899999999999999999999999998855 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (969)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~ 157 (969)
+.+||+.+.+.+..-+++ .+.+++|+-.+|..++.+.+ .||++|++++..-+. +.+.++..+.+|+.|.
T Consensus 87 r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~---s~~vCeNnmivLklLs 163 (1053)
T COG5101 87 RQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI---SMEVCENNMIVLKLLS 163 (1053)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc---hHHHHhccHHHHHHhH
Confidence 999999999988765532 36899999999999999987 699999999986653 3456788999999999
Q ss_pred hccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHH---HHHHHHHHHHHccccccccc
Q 002084 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNR---KILRCLLSWVRAGCFTEISQ 234 (969)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~---~~l~cl~sWi~~~~~~~~~~ 234 (969)
||+.++..-. ++..+...++.+|....+.++.++.+++++..+ +++.. ..+.|+..||+++
T Consensus 164 EEvFdfSaeq--mTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~-------~SLi~ATLesllrfl~wiPl~------- 227 (1053)
T COG5101 164 EEVFDFSAEQ--MTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRD-------ESLIEATLESLLRFLEWIPLD------- 227 (1053)
T ss_pred HHHHhccHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCchh-------
Confidence 9999875433 666777788888999999999999999988643 34444 4555556666554
Q ss_pred hhhcccchHHHHHh-hcCCCCcHHHHHHHHHHHHhcCCC-----hhHHHH----hhh------------hhhHHhhhhhh
Q 002084 235 GSLAAHPLLNFVFN-SLQVQSSFDVAIEVLVELVGRHEG-----LPQALL----CRV------------PFLKELLLLPA 292 (969)
Q Consensus 235 ~~i~~~~ll~~~~~-~L~~~~~~~~a~~~l~ei~~~~~~-----~~~~l~----~~~------------~~l~~~~~~~~ 292 (969)
.+..+.+++++.. +++.|+.+.++++|++|+.+..+. ..+.++ ..+ -.+.+.|. .
T Consensus 228 -yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~--~ 304 (1053)
T COG5101 228 -YIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYG--G 304 (1053)
T ss_pred -HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHc--c
Confidence 5778889998884 445688899999999999986521 111111 111 11222222 1
Q ss_pred hccCchhHHhhHHHHHHHHhhhhhHHHHhcC-h-hHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhc-c---c-
Q 002084 293 LTDGDEKVIGGLACLMSEIGQAAPSLIVEAS-P-EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILG-L---D- 365 (969)
Q Consensus 293 ~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~-~-~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~-~---~- 365 (969)
....|.++.++++.+++++-+.+...+.... . ..+....+|+++.... +.+++..++++|..|.-.+++ . +
T Consensus 305 ~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrIn--ereiFkt~leyW~klVadLy~E~q~lp~ 382 (1053)
T COG5101 305 MDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRIN--EREIFKTALEYWNKLVADLYSEFQRLPA 382 (1053)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2233456889999999999999988886432 2 3456678899998885 689999999999998766652 1 0
Q ss_pred ----h---------------hhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCC---CCCC-----CCCCchHHHHHH
Q 002084 366 ----A---------------SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN---DDGM-----VDLPDGLVQFRM 418 (969)
Q Consensus 366 ----~---------------~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~---~~~~-----~~e~d~f~~fR~ 418 (969)
. +..+..+-....|..++++|.-+++.+|.-|++... |+++ -.|. |-.++.+
T Consensus 383 tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvket-DtI~lYk 461 (1053)
T COG5101 383 TEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKET-DTIELYK 461 (1053)
T ss_pred cccCcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccc-cHhHHHH
Confidence 0 011123345567889999999999999999988542 1121 0111 2234566
Q ss_pred HHHHHHHHHHHhcCcH--H-HHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCch
Q 002084 419 NLVELLVDICQLLRSA--T-FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (969)
Q Consensus 419 ~~~d~l~~~~~ilg~~--~-~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~ 495 (969)
.+.+++.+..++.-.+ . ++..+...+ .+..|+|+.+...+|++|+|++.+.++.+.-.+-.+.+-+..+.....
T Consensus 462 smRevLvyLthL~v~Dte~~mi~Klarq~---dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKr 538 (1053)
T COG5101 462 SMREVLVYLTHLIVDDTEKYMIGKLARQL---DGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKR 538 (1053)
T ss_pred HHhhHHHHHhhhhhhhHHHHHHHHHHHHh---cCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 7778888887653322 2 222222222 246799999999999999999999875442112234444445554333
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCCc---cHHH
Q 002084 496 EELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPS---NLEI 570 (969)
Q Consensus 496 ~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~~~---~~~~ 570 (969)
.+. .++|+++.+|+++|+|++|++.|+.||.+++..||..++. .+++.+||.+|-+|.+.|+.+.+..+ ..+.
T Consensus 539 gKd--nKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpF 616 (1053)
T COG5101 539 GKD--NKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPF 616 (1053)
T ss_pred cCC--cchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcH
Confidence 222 2578999999999999999999999999999999999994 56999999999999999998775322 3567
Q ss_pred HHHHHHHHH--hcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHH
Q 002084 571 LMWIGEALE--KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSS 648 (969)
Q Consensus 571 l~~~~~~l~--~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 648 (969)
+..+++.+. .+.+.+.....+|||+|.+|+..|........+..+++-....|.++..++..+..+.........+..
T Consensus 617 I~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an 696 (1053)
T COG5101 617 IVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDAN 696 (1053)
T ss_pred HHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHH
Confidence 778888875 477888899999999999999999876667777788888888888887765332111110000000000
Q ss_pred HHHHHHhhhhhcccccccCCCCCCCCchHHH---HHHhHHHHHHHHHHh-----h---hccchHHHHHHHHHHHHHHH--
Q 002084 649 ATRGLYRMGTVFSHLPVPLPTNPAGDDPIFA---LLRVFWPMLEKLFRS-----E---HMENGNLSTAACRALSLAIQ-- 715 (969)
Q Consensus 649 ~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~---~~~~i~~~l~~il~~-----~---~~~~~~v~e~~c~~l~~~~~-- 715 (969)
.+ ....+.+ -.++.+..+ +-....+.. .+....-+-..+... + +.+--.|-..+..++..-+.
T Consensus 697 ~~--ktnVa~c-tslg~~fyP-q~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska 772 (1053)
T COG5101 697 KM--KTNVAKC-TSLGYRFYP-QTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKA 772 (1053)
T ss_pred HH--HHHHHHH-hhcccccch-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhh
Confidence 00 0000000 011111110 000000100 001111111111100 0 00000000111111111111
Q ss_pred -hhhhhhHhhHHHHHHHHHHhhhhhc---CcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCC
Q 002084 716 -SSGQHFVTLLPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQE 791 (969)
Q Consensus 716 -~~~~~~~p~l~~l~~~l~~~~~~~~---~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~ 791 (969)
.+..--..+++.+++.++-.|.... +.+.+|.+.+.+|...++.- .....-.+.....++ +..+. .+++++
T Consensus 773 ~dl~~V~n~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i--~~~~~l~l~svf~ct-l~mi~--kdf~Ey 847 (1053)
T COG5101 773 RDLKFVQNDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVI--YLQRELFLISVFICT-LIMIV--KDFDEY 847 (1053)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHhhh-HHHHH--hhhhhC
Confidence 1122234566778888888887542 35678999999999887521 111111222333444 33333 367899
Q ss_pred CcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHH
Q 002084 792 PDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFN 871 (969)
Q Consensus 792 pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~ 871 (969)
|++..+||.|+..+..++...|+.-|+|.+..+.+..++++++..|+....+++.+..++.+.... + .
T Consensus 848 pEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~m----g--------~ 915 (1053)
T COG5101 848 PEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEM----G--------V 915 (1053)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHh----C--------C
Confidence 999999999999999999999998887889999999999999999999999999999999876642 1 1
Q ss_pred HHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHH
Q 002084 872 AMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAA 914 (969)
Q Consensus 872 ~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~ 914 (969)
..+.++..++.-..+.+++..+++..++|+++..+-+|..|+.
T Consensus 916 ~~~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~li~ 958 (1053)
T COG5101 916 PFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIR 958 (1053)
T ss_pred chHHHHHHHHHHHHHHHHHeeeeccchhccchHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999984
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-36 Score=322.02 Aligned_cols=710 Identities=15% Similarity=0.152 Sum_probs=471.4
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHH
Q 002084 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (969)
Q Consensus 8 ~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~ 87 (969)
++.+.++.- .+||++.|+.++.-|.+|+.-|+--.+-..+|...+ +.+..+|--|...|++.++-+|...+.+...
T Consensus 14 ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~---~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~ 89 (885)
T KOG2023|consen 14 QLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAK---SEDVPTRSLAGLLLKNNVRGHYNSIPSEVLD 89 (885)
T ss_pred HHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEeccc---ccchhHHHHhhhhHhccccccccCCChHHHH
Confidence 344444432 268999999999999999999999998888888766 4678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccc
Q 002084 88 ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (969)
Q Consensus 88 ~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~ 165 (969)
.+|..++..+. +.++.||+.....+.+++-... .||+.++.++..+.+. +.+.++..+.-|+.+.|+... .
T Consensus 90 yiKs~~l~~lg---d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~--d~n~~EgA~~AL~KIcEDsa~--~ 162 (885)
T KOG2023|consen 90 YIKSECLHGLG---DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP--DYNTCEGAFGALQKICEDSAQ--F 162 (885)
T ss_pred HHHHHHHhhcc---CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC--cccccchhHHHHHHHHhhhHH--H
Confidence 99999988775 4557899888888888877654 7999999999999763 334567777778888876542 1
Q ss_pred cccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHH
Q 002084 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245 (969)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~ 245 (969)
.+ .+ -..+-+.--.|..++|..+ +++.++..+++|++..|... + ..++
T Consensus 163 ld----s~---~~~rpl~~mipkfl~f~~h------------~spkiRs~A~~cvNq~i~~~-----~------qal~-- 210 (885)
T KOG2023|consen 163 LD----SD---VLTRPLNIMIPKFLQFFKH------------PSPKIRSHAVGCVNQFIIIQ-----T------QALY-- 210 (885)
T ss_pred Hh----hh---cccCchHHhHHHHHHHHhC------------CChhHHHHHHhhhhheeecC-----c------HHHH--
Confidence 11 00 0011233345666666643 24579999999999877632 1 1111
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhcChh
Q 002084 246 VFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPE 325 (969)
Q Consensus 246 ~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~ 325 (969)
..+|-+.| .++ ....++|++..+++|+-|+-+.|-.+..++ ++
T Consensus 211 ------------~~iD~Fle---------------------~lF-alanD~~~eVRk~vC~alv~Llevr~dkl~---ph 253 (885)
T KOG2023|consen 211 ------------VHIDKFLE---------------------ILF-ALANDEDPEVRKNVCRALVFLLEVRPDKLV---PH 253 (885)
T ss_pred ------------HHHHHHHH---------------------HHH-HHccCCCHHHHHHHHHHHHHHHHhcHHhcc---cc
Confidence 11111111 111 122677888999999999999998888777 34
Q ss_pred HHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCC----
Q 002084 326 ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF---- 401 (969)
Q Consensus 326 ~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~---- 401 (969)
.-.++++||+.+.-+ |++|+-.+.|||..++|. +...+...|++.+++.+++.+|.|.+++.
T Consensus 254 l~~IveyML~~tqd~--dE~VALEACEFwla~aeq------------pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~ 319 (885)
T KOG2023|consen 254 LDNIVEYMLQRTQDV--DENVALEACEFWLALAEQ------------PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLK 319 (885)
T ss_pred hHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcC------------cCcHHHHHHHHHHHHHHHHccCccccccHHHhc
Confidence 457899999999887 788999999999999984 23557899999999999999999954311
Q ss_pred ---C------------------------------C--CCCCCCCchHHHH--HHHHHHHHHHHHHhcCcHHHHHHHHhhh
Q 002084 402 ---N------------------------------D--DGMVDLPDGLVQF--RMNLVELLVDICQLLRSATFIQKVFFGS 444 (969)
Q Consensus 402 ---~------------------------------~--~~~~~e~d~f~~f--R~~~~d~l~~~~~ilg~~~~l~~l~~~~ 444 (969)
+ | +++.|++|.|.++ |+--+-.+.-..++.|.+ ++..++--+
T Consensus 320 ~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlL 398 (885)
T KOG2023|consen 320 NNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLL 398 (885)
T ss_pred CccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHH
Confidence 0 0 0011223334433 554444444444556653 444443322
Q ss_pred hcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCh
Q 002084 445 WGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (969)
Q Consensus 445 ~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p 524 (969)
.. ...+..|...||+.+++|+|||++-..-. ..+|.++..+..+.+..+ +.||..| ||+++||+.|+...+
T Consensus 399 k~-~L~~~~W~vrEagvLAlGAIAEGcM~g~~-p~LpeLip~l~~~L~DKk------plVRsIT-CWTLsRys~wv~~~~ 469 (885)
T KOG2023|consen 399 KE-HLSSEEWKVREAGVLALGAIAEGCMQGFV-PHLPELIPFLLSLLDDKK------PLVRSIT-CWTLSRYSKWVVQDS 469 (885)
T ss_pred HH-HcCcchhhhhhhhHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhccCc------cceeeee-eeeHhhhhhhHhcCC
Confidence 22 12346799999999999999999864332 235666665555444333 2267778 599999999987643
Q ss_pred --hchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 002084 525 --TNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (969)
Q Consensus 525 --~~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~ 600 (969)
+|+.+++.-++..+-+ ..|+.+||.||..+-++....|+ |+...+|.++...+.+++ .+...-+|.|||.+..
T Consensus 470 ~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV-p~l~~IL~~l~~af~kYQ--~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 470 RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV-PYLEYILDQLVFAFGKYQ--KKNLLILYDAIGTLAD 546 (885)
T ss_pred hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHHh--hcceehHHHHHHHHHH
Confidence 7999999999988876 45999999999999999988886 433345555555554443 4456788999999998
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHH
Q 002084 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680 (969)
Q Consensus 601 ~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~ 680 (969)
.+...-....|++.|+.|++++|+.+-..+ +..+ -.++|++++-+.++.+.- .-+.++
T Consensus 547 svg~~Ln~~~YiqiLmPPLi~KW~~lsd~D--------KdLf--------PLLEClSsia~AL~~gF~------P~~~~V 604 (885)
T KOG2023|consen 547 SVGHALNKPAYIQILMPPLIEKWELLSDSD--------KDLF--------PLLECLSSIASALGVGFL------PYAQPV 604 (885)
T ss_pred HHHHhcCcHHHHHHhccHHHHHHHhcCccc--------chHH--------HHHHHHHHHHHHHhcccc------ccCHHH
Confidence 876544457899999999999998875432 2222 346777776666664321 012234
Q ss_pred HHhHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHHhcC
Q 002084 681 LRVFWPMLEKLFRS--EHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGH 758 (969)
Q Consensus 681 ~~~i~~~l~~il~~--~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g~ 758 (969)
+++++.++...++. +-.++ | . ...+.+ ...-+-|++.+.++...|+
T Consensus 605 y~Rc~~il~~t~q~~~~~~~~-----------------------~---~-----~~~pdk-dfiI~sLDL~SGLaegLg~ 652 (885)
T KOG2023|consen 605 YQRCFRILQKTLQLLAKVQQD-----------------------P---T-----VEAPDK-DFIIVSLDLLSGLAEGLGS 652 (885)
T ss_pred HHHHHHHHHHHHHHHHhccCC-----------------------c---c-----ccCCCc-ceEEEeHHHHhHHHHHhhh
Confidence 45555554433221 00011 0 0 001122 1355668999999999987
Q ss_pred CCCcchhHHH--HHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCc
Q 002084 759 KDEYGPLFVT--TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH 836 (969)
Q Consensus 759 ~~~~~~~~~~--l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e 836 (969)
.-+ +.+.+ +...+.++ ..+.-||++++.|.|+..+.+.|+..+.+ .+..++......+...+
T Consensus 653 ~ie--~Lva~snl~~lll~C----------~~D~~peVRQS~FALLGDltk~c~~~v~p----~~~~fl~~lg~Nl~~~~ 716 (885)
T KOG2023|consen 653 HIE--PLVAQSNLLDLLLQC----------LQDEVPEVRQSAFALLGDLTKACFEHVIP----NLADFLPILGANLNPEN 716 (885)
T ss_pred chH--HHhhhccHHHHHHHH----------hccCChHHHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHhhcCChhh
Confidence 522 22211 22222232 12677999999999999999999988875 35555554444555555
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhc-CCCcccchhhHHHHHHHHHH
Q 002084 837 RGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALL-GVSAMSRVHKCATILQQLAA 914 (969)
Q Consensus 837 ~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~-g~~~rS~~~~~~~iL~~l~~ 914 (969)
..+...|+--+-.+-... ..-+.++-..++..++.-+- -..+++.+++.+-.+.+|.-
T Consensus 717 isv~nNA~WAiGeia~k~--------------------g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~ 775 (885)
T KOG2023|consen 717 ISVCNNAIWAIGEIALKM--------------------GLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGY 775 (885)
T ss_pred chHHHHHHHHHHHHHHHh--------------------chhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhc
Confidence 555555543222222111 11112233444445554433 36888999999999999983
No 6
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-30 Score=301.16 Aligned_cols=854 Identities=15% Similarity=0.136 Sum_probs=538.4
Q ss_pred hHHHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCC
Q 002084 4 DLQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (969)
Q Consensus 4 ~~~~~v~~ai~~ly~~-~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~ 82 (969)
....++..|+...+.+ ++.+.|.+|++.|.+||..|++|..|..+|+.. +..+++|||.|.|.+-|+++|+.+|
T Consensus 7 ~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s-----~~~~~k~f~Lqlle~vik~~W~~~~ 81 (1041)
T KOG2020|consen 7 KLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLS-----TNPILKYFALQLLENVIKFRWNSLP 81 (1041)
T ss_pred hHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhcc-----CCchhheeeHHHHHHHHHHhcccCC
Confidence 3455677777775555 888999999999999999999999999999875 3579999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHh
Q 002084 83 SAAKDALLNALLVAAKRFSS------GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (969)
Q Consensus 83 ~~~~~~Lr~~Ll~~l~~~~~------~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~ 154 (969)
.+++.++|+.++..+...+. ..+.+++||+..+.-++++.+ .||+++.++...... ++..++..+.+++
T Consensus 82 ~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~---s~~~~el~m~Il~ 158 (1041)
T KOG2020|consen 82 VEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT---SETVCELSMIILL 158 (1041)
T ss_pred ccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc---CcccchHHHHHHH
Confidence 99999999999998875442 246899999999999999987 699999999999886 3456789999999
Q ss_pred hchhccccccccccCCCHHHHHHHHHH-HHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccc
Q 002084 155 VLPEEVIDSQASDCNISSAHRSQYGQE-LLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (969)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~-l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~ 233 (969)
.|.||+.+.++.. ++ .+|..+.+. +......+..++.....+... +-.......+.++.+||+++
T Consensus 159 lLsEdvf~~ss~~--~~-q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~-----~~~~atl~tl~~fl~wip~~------ 224 (1041)
T KOG2020|consen 159 LLSEEVFDFSSSE--LT-QQKIIILKNLLENEFQQIFTLCSYIKEKANS-----ELLSATLETLLRFLEWIPLG------ 224 (1041)
T ss_pred HHHHHHhcccchH--HH-hhhHHHHHHHhhHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhhcccHH------
Confidence 9999999876543 33 334344433 344667777777665444321 11123455666677777765
Q ss_pred chhhcccchHH-HHHhhcCCCCcHHHHHHHHHHHHhcCCCh-hH---HH----------HhhhhhhHHhhhhhhhccCch
Q 002084 234 QGSLAAHPLLN-FVFNSLQVQSSFDVAIEVLVELVGRHEGL-PQ---AL----------LCRVPFLKELLLLPALTDGDE 298 (969)
Q Consensus 234 ~~~i~~~~ll~-~~~~~L~~~~~~~~a~~~l~ei~~~~~~~-~~---~l----------~~~~~~l~~~~~~~~~~~~d~ 298 (969)
.+..+..+. .+...++.++.+..|++|+.++++..... .. .+ ++...+..+.|. .....|.
T Consensus 225 --~I~~tn~l~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~--~~~~~dq 300 (1041)
T KOG2020|consen 225 --YIFETNILELLLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYS--SLSDEDQ 300 (1041)
T ss_pred --HHHHhhhHHHHHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhh--cccHhHH
Confidence 343333344 44466667899999999999999976421 10 11 122222233222 1223344
Q ss_pred -hHHhhHHHHHHHHhhhhhHHHHhc----ChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccc----h-hh
Q 002084 299 -KVIGGLACLMSEIGQAAPSLIVEA----SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD----A-SI 368 (969)
Q Consensus 299 -d~~~~l~~l~~~~~e~~~~~l~~~----~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~----~-~~ 368 (969)
...++++.+++.+++.+...+... +.....+...++..+-+| -++...|++.|..+..+++..+ . +.
T Consensus 301 ~~fi~~l~~~l~~f~~~~~~lle~~~~~~~~~~~~~~~li~i~~~~~---se~~~~~ld~W~~lv~~l~~~~~~ll~~s~ 377 (1041)
T KOG2020|consen 301 DSFIEKLAQFLSLFFEQHIALLESSLSQRPVLLEALLELILISTIEP---SEIFKICLDYWNKLVADLYYNKPPLLQLST 377 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHHHhhhccccccccccc
Confidence 678999999999999999998762 112234455554444443 5788889999999887754320 0 00
Q ss_pred -------hhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCC--CCCC-----CCCCchHHHHHHHHHHHHHHHHHhcCcH
Q 002084 369 -------AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN--DDGM-----VDLPDGLVQFRMNLVELLVDICQLLRSA 434 (969)
Q Consensus 369 -------~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~--~~~~-----~~e~d~f~~fR~~~~d~l~~~~~ilg~~ 434 (969)
...-+-....|..++.++....+.+|.-|+.... +++. .--..+|..+...+.+.+...+.+-+..
T Consensus 378 ~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~ 457 (1041)
T KOG2020|consen 378 TLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVD 457 (1041)
T ss_pred ccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhh
Confidence 0001123677888899999888999998877432 1110 0013455555566666666555543322
Q ss_pred H---HHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchh-HHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 002084 435 T---FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS-VIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (969)
Q Consensus 435 ~---~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~-~i~~ll~~l~~~~~~~~~~~~~v~~~t~~ 510 (969)
. ....+-..+ .+..++|..+..-+|+++++++.+.++.....+. .+...+ .+.+.+..+. .+++....++
T Consensus 458 t~~~~~~kl~~~l---~~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l-~l~E~~~~kd--n~avi~~Ni~ 531 (1041)
T KOG2020|consen 458 TEKIMTEKLAIQL---DGDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLL-NLCERKRGKD--NKAVIASNIM 531 (1041)
T ss_pred hhhhhhHhHHHHh---hHHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhcCC--chhHHHHHHH
Confidence 1 111111111 1245789999999999999988766432211111 222222 2332222221 1357777889
Q ss_pred HHHHhhHHHHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccC--CCc-cHHHHHHHHHHHH--hcCC
Q 002084 511 DVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALID--EPS-NLEILMWIGEALE--KRHL 583 (969)
Q Consensus 511 ~lig~ys~wl~~~p~~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~--~~~-~~~~l~~~~~~l~--~~~l 583 (969)
+++|.|..|++.|..+|.++...+++.++. ..++.+|+.+|.+|...|+.+.+ .+. ..+....+...+. ...+
T Consensus 532 ~vv~q~p~Fl~~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l 611 (1041)
T KOG2020|consen 532 YVVGQYPRFLKAHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDL 611 (1041)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCc
Confidence 999999999999999999999999999985 55899999999999999998532 111 1222233333322 2455
Q ss_pred ChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCCCchhHHHHHHHHHHHHHhhhhhccc
Q 002084 584 PLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSH 662 (969)
Q Consensus 584 ~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~~~~~~l~~L~~i~~~ 662 (969)
....+...++++|.++.+-..+.....+...+..-.-..+.+++.++... +.-..+.. +.+..+.+.......+.
T Consensus 612 ~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~----v~s~~~i~~~~~~~~~s 687 (1041)
T KOG2020|consen 612 QPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLET----VKSLLNILKTNSRALTS 687 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHH----HHHHHHHHHhHHHHHHh
Confidence 67789999999997777654444456667666655555666655544221 00001111 11222223333344444
Q ss_pred ccccCCCCCCCC-chHHHHHHhHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhh----hh------hhHhhHHHHH
Q 002084 663 LPVPLPTNPAGD-DPIFALLRVFWPMLEKLFRS--EHMENGNLSTAACRALSLAIQSS----GQ------HFVTLLPQVL 729 (969)
Q Consensus 663 l~~~~~~~~~~~-~p~~~~~~~i~~~l~~il~~--~~~~~~~v~e~~c~~l~~~~~~~----~~------~~~p~l~~l~ 729 (969)
++.+.....+.. .-...++...-+.+...... ......+.+.....+-+-+...+ +. .-..++|+++
T Consensus 688 l~~~f~~~~~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1041)
T KOG2020|consen 688 LGSTFVPQLGKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLL 767 (1041)
T ss_pred cCcccccccccccHHHHHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHH
Confidence 444322111100 00112222222222221110 01122222222222221111111 11 1223445555
Q ss_pred HHHHHhhhhhc---CcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH
Q 002084 730 DCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFV 806 (969)
Q Consensus 730 ~~l~~~~~~~~---~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l 806 (969)
....-.|.... +.+..+.+...++..+|.- +...+...+.++..++ +.... .+..+.||+...|+.++..+.
T Consensus 768 ~~~~fd~~~nvPd~r~~~vl~l~~~iv~~Lg~~--i~~~~~~i~~~v~~c~-l~m~~--~d~qe~~e~~~~f~~lle~l~ 842 (1041)
T KOG2020|consen 768 DAVLFDYLDNVPDYRENEVLSLNATIVPKLGEF--IPAELPLINIAVLECT-LEMIN--KDFQEYPEHRLNFLLLLEALL 842 (1041)
T ss_pred HHHHHHHHccCcchhcchHHHhhhhhhhhhhhH--hhhhccHHHHHHHhhh-hhccc--cccccchHHHHHHHHHHHHHH
Confidence 55554454221 2344556666666666652 1111212233344443 33332 467899999999999999999
Q ss_pred HhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHH
Q 002084 807 RTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLV 886 (969)
Q Consensus 807 ~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv 886 (969)
..|+..+...+++.+..+++.+.++..+..|....+.+.-++.++...... + .....++++++..++
T Consensus 843 ~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~-----------~--~~~~~~~~~~~~~~l 909 (1041)
T KOG2020|consen 843 LFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEM-----------E--KFANAFYQTYFLSLL 909 (1041)
T ss_pred HhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-----------h--HHHHHHHHHHHHHHH
Confidence 999999988776777788888889999888999999998888777654321 1 457888999999999
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHH
Q 002084 887 SNVVYALLGVSAMSRVHKCATILQQLAA 914 (969)
Q Consensus 887 ~~ll~~~~g~~~rS~~~~~~~iL~~l~~ 914 (969)
...+..+.+..+.+.+....-.+..+..
T Consensus 910 ~~~~~~~~~~~~~~~f~~~~L~~~~l~~ 937 (1041)
T KOG2020|consen 910 QKIIAVLTDTDHKAGFTKQVLKLQFLFR 937 (1041)
T ss_pred HHHHHHHhccchhhcchHHHHHHHHHHH
Confidence 9999999999999999999888888884
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-27 Score=276.70 Aligned_cols=601 Identities=17% Similarity=0.184 Sum_probs=422.6
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHH
Q 002084 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (969)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~ 85 (969)
+..+.+.+..|- +||++.|++|++-|+..-+++..-..-..++.. +.++++|.+||..+|..+.+.|+.++.|.
T Consensus 3 ~~~l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-----~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 3 SAPLEQLLQQLL-SPDNEVRRQAEEALETLAKTEPLLPALAHILAT-----SADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hhHHHHHHHHhc-CCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 567999999987 568889999999999766665555555556655 34689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccc
Q 002084 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (969)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~ 163 (969)
+++||.+||..+.+ +..+.||+|+|.++|.++-... .||+.++-++++.++. ++...+..+.+|+.+|+-+++.
T Consensus 77 ~~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccc
Confidence 99999999999986 5568899999999999998764 5999999999999874 5677899999999999988632
Q ss_pred cccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchH
Q 002084 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (969)
Q Consensus 164 ~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll 243 (969)
+..+...+..++.+++..+. ..++..+++.+.+.+.+. +...+. .
T Consensus 153 ------------------~~~~~~~l~~lf~q~~~d~s--------~~vr~~a~rA~~a~~~~~---~~~~~~------~ 197 (1075)
T KOG2171|consen 153 ------------------LQPHLDDLLRLFSQTMTDPS--------SPVRVAAVRALGAFAEYL---ENNKSE------V 197 (1075)
T ss_pred ------------------cchhHHHHHHHHHHhccCCc--------chHHHHHHHHHHHHHHHh---ccchHH------H
Confidence 12245677778888776532 238899999999988863 100110 0
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhcC
Q 002084 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (969)
Q Consensus 244 ~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~ 323 (969)
+....++|.++...+ +.+.++|.|.....-..|.++.++..+.+.
T Consensus 198 ----------------------------~~~~~llP~~l~vl~----~~i~~~d~~~a~~~l~~l~El~e~~pk~l~--- 242 (1075)
T KOG2171|consen 198 ----------------------------DKFRDLLPSLLNVLQ----EVIQDGDDDAAKSALEALIELLESEPKLLR--- 242 (1075)
T ss_pred ----------------------------HHHHHHhHHHHHHhH----hhhhccchHHHHHHHHHHHHHHhhchHHHH---
Confidence 012345576655332 244667777788888999999998887775
Q ss_pred hhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCC-C-CC
Q 002084 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDE-S-SF 401 (969)
Q Consensus 324 ~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~-~-~~ 401 (969)
+.+..++++.+++.+...-|..+...+++|-..+.+.- +.......++..+++.+++.-|.=-. | +|
T Consensus 243 ~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-----------p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 243 PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-----------PAMCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-----------HHHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 45567888888887775445667788999999888862 22344555556677777666554211 1 12
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccch
Q 002084 402 NDDGMVDLPDGLVQFRMNLVELLVDIC-QLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF 480 (969)
Q Consensus 402 ~~~~~~~e~d~f~~fR~~~~d~l~~~~-~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l 480 (969)
.++++ .|+|+ .+--+.++.-..|.. .-||+...+..++..+.. ...+.+|....|+|.++++++|++.+.... .+
T Consensus 312 ~~~d~-~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~-~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l 387 (1075)
T KOG2171|consen 312 SNEDD-LDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEA-MLQSTEWKERHAALLALSVIAEGCSDVMIG-NL 387 (1075)
T ss_pred ccccc-ccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HH
Confidence 21111 22222 222233343344443 348887666666554322 124678999999999999999999753221 26
Q ss_pred hHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHH-----HhChhchHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 002084 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWI-----SAFQTNARPLLLFLAAGISEAVSSNACASALRKIC 555 (969)
Q Consensus 481 ~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl-----~~~p~~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc 555 (969)
+.|++++....+.|+++ ||+.+ |..||+.+.=| +.|.+.+++.|-++...-.+++++.+||.|+-.+.
T Consensus 388 ~~Il~~Vl~~l~Dphpr------Vr~AA-~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPR------VRYAA-LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHHHHHhhcCCCCHH------HHHHH-HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 78888777777777754 78977 59999998755 34778888888888888888899999999999999
Q ss_pred HHhhcccCCCccHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 002084 556 EDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHS 634 (969)
Q Consensus 556 ~~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~ 634 (969)
++|.+....| +++.|++ ....+. .+-+...++.++.+||+|..+... ....|..+++.- +.+++.+..+.+
T Consensus 461 E~~~~~~l~p-YLd~lm~~~l~~L~-~~~~~~v~e~vvtaIasvA~AA~~--~F~pY~d~~Mp~----L~~~L~n~~~~d 532 (1075)
T KOG2171|consen 461 EECDKSILEP-YLDGLMEKKLLLLL-QSSKPYVQEQAVTAIASVADAAQE--KFIPYFDRLMPL----LKNFLQNADDKD 532 (1075)
T ss_pred HhCcHHHHHH-HHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHhh--hhHhHHHHHHHH----HHHHHhCCCchh
Confidence 9998866543 7888877 444332 334678899999999999988753 356777777643 344454442211
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 002084 635 LIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAI 714 (969)
Q Consensus 635 ~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~ 714 (969)
.+ .|+ ...++|++.+...++. +++.+..++++.++.......-..|....+-.-..+.++-
T Consensus 533 ~r--------~Lr--gktmEcisli~~AVGk---------e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 533 LR--------ELR--GKTMECLSLIARAVGK---------EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred hH--------HHH--hhHHHHHHHHHHHhhh---------hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHH
Confidence 11 111 3457888876665442 3455666777777766643112245566666677788888
Q ss_pred HhhhhhhHhhHHHHHHHHHHh
Q 002084 715 QSSGQHFVTLLPQVLDCLSTN 735 (969)
Q Consensus 715 ~~~~~~~~p~l~~l~~~l~~~ 735 (969)
+.+|++|.|++|.++.-+...
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHHh
Confidence 889999999999887777643
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.8e-20 Score=202.70 Aligned_cols=597 Identities=14% Similarity=0.119 Sum_probs=379.0
Q ss_pred CCChHHHHHHHHHHHHHhcC--hHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhh-----------cCcCCCChHH
Q 002084 19 DTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (969)
Q Consensus 19 ~~d~~~~~~A~~~L~~~Q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~-----------~~~~~l~~~~ 85 (969)
++|+..+++|+++|.++|+. |.--....+.|.+++ .++..|.-|+.+||+-+. .+|-+++.|.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~----~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~ 87 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDN----SSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEI 87 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccC----CcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHH
Confidence 68999999999999999998 444555566676654 357999999999999885 4699999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchh-c--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhcccc
Q 002084 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (969)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~-~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~ 162 (969)
++++|+.++..|.. ..+.+.+--+.++|.++... | .||+++..++......++. ......|+-+..++|++.
T Consensus 88 reqVK~~il~tL~~---~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~-~~k~~slealGyice~i~- 162 (859)
T KOG1241|consen 88 REQVKNNILRTLGS---PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQAS-MVKESSLEALGYICEDID- 162 (859)
T ss_pred HHHHHHHHHHHcCC---CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCC-
Confidence 99999999998863 22333444445556655432 3 6999999999998765422 344688999999999873
Q ss_pred ccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccch
Q 002084 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (969)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~l 242 (969)
+ +.+...+..|+.-+.+...... ++..++..+++|+..=+.+..- ++..+ ...+-+
T Consensus 163 --------p--------evl~~~sN~iLtaIv~gmrk~e------~s~~vRLaa~~aL~nsLef~~~-nF~~E-~ern~i 218 (859)
T KOG1241|consen 163 --------P--------EVLEQQSNDILTAIVQGMRKEE------TSAAVRLAALNALYNSLEFTKA-NFNNE-MERNYI 218 (859)
T ss_pred --------H--------HHHHHHHhHHHHHHHhhccccC------CchhHHHHHHHHHHHHHHHHHH-hhccH-hhhcee
Confidence 1 1344555666655544433322 3456899999999876665310 11111 123345
Q ss_pred HHHHHhhcCCC--CcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHH
Q 002084 243 LNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV 320 (969)
Q Consensus 243 l~~~~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~ 320 (969)
|+.+.++-+.+ ++.-+|..|++.|++.|-+ .+-+.|.
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~---~m~~yM~-------------------------------------- 257 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE---FMEPYME-------------------------------------- 257 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHH---HHHHHHH--------------------------------------
Confidence 66666666544 4567777888777665311 1111110
Q ss_pred hcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccch----hhhhhhh-hhhhhhHHHHHHHHHHHHHHcc
Q 002084 321 EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDA----SIAKNKK-HVEDMFFSVFSALLDALLLRAQ 395 (969)
Q Consensus 321 ~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~----~~~~~~~-~~~~~~~~~~~~l~~~l~~k~~ 395 (969)
..++..-+..+.-+ +++|+-.++|||...+|+=.++.. ......+ ......+.-+..++.+++..+.
T Consensus 258 ------~alfaitl~amks~--~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 258 ------QALFAITLAAMKSD--NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred ------HHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 11222222323332 578999999999988765322111 1111111 1111223345677888888886
Q ss_pred C-CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccC
Q 002084 396 V-DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (969)
Q Consensus 396 ~-p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~ 474 (969)
. +++...|+|.. -+..|-.++-.....|++ ++.+++.-+.+ .-.+.+|+..||+.+++|++-++-..+
T Consensus 330 kqde~~d~DdWnp---------~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee-~i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 330 KQDEDDDDDDWNP---------AKAAGVCLMLFAQCVGDD-IVPHVLPFIEE-NIQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred hCCCCcccccCcH---------HHHHHHHHHHHHHHhccc-chhhhHHHHHH-hcCCcchhhhhHHHHHHHhhhcCCchh
Confidence 5 33322233432 133344444444455543 33333221111 124678999999999999997665432
Q ss_pred CcccchhHHHHHHHHh---ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---ChhchHHHHHHHHHhccc-CchhHHH
Q 002084 475 GQAFDFSVIMQLVAVL---SASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGISE-AVSSNAC 547 (969)
Q Consensus 475 ~~~~~l~~i~~ll~~l---~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~---~p~~L~~~l~~l~~~l~~-~~~~~~A 547 (969)
.. .+.+.+.++.+ -..|. ..++.|+ .+.+|+.++++.. |.+++.+.+..+..||++ |+++..+
T Consensus 399 ~L---t~iV~qalp~ii~lm~D~s------l~VkdTa-AwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~ 468 (859)
T KOG1241|consen 399 KL---TPIVIQALPSIINLMSDPS------LWVKDTA-AWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNV 468 (859)
T ss_pred hh---hHHHhhhhHHHHHHhcCch------hhhcchH-HHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHH
Confidence 21 13333333322 22333 2256555 5999999998864 567999999999999996 8899999
Q ss_pred HHHHHHHHHHhhcccCCC----ccHHHHHHHHHHHHh--cC---CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 002084 548 ASALRKICEDASALIDEP----SNLEILMWIGEALEK--RH---LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSS 618 (969)
Q Consensus 548 a~al~~lc~~c~~~l~~~----~~~~~l~~~~~~l~~--~~---l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p 618 (969)
|.||..|.+.|..-...+ +..+.+..++..+.. .+ -.+.-|...|++++.+|..-|.+ ....+.++...
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~--vy~~v~~~~l~ 546 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD--VYPMVQKLTLV 546 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHH
Confidence 999999999997644332 223455566655532 22 23456888999999999998864 46778889989
Q ss_pred HHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhcc
Q 002084 619 SYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHME 698 (969)
Q Consensus 619 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~ 698 (969)
+..++.+.++...- +-.+ ......|++.+ -.+|..+.|-++++ ...+-.+++..+-++++ . +.
T Consensus 547 il~kl~q~i~~~~l--~~~d-r~q~~eLQs~L--c~~Lq~i~rk~~~~----------~~~~~d~iM~lflri~~-s-~~ 609 (859)
T KOG1241|consen 547 ILEKLDQTISSQIL--SLAD-RAQLNELQSLL--CNTLQSIIRKVGSD----------IREVSDQIMGLFLRIFE-S-KR 609 (859)
T ss_pred HHHHHHHHHHHHhc--cHhh-HHHHHHHHHHH--HHHHHHHHHHcccc----------chhHHHHHHHHHHHHHc-C-Cc
Confidence 99999998883211 0111 11112222211 23455666665542 22456778888888887 4 56
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhh
Q 002084 699 NGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFV 737 (969)
Q Consensus 699 ~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~ 737 (969)
+..+-|.+...+...+..+|..|..++|.+..++..+..
T Consensus 610 s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~ 648 (859)
T KOG1241|consen 610 SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLS 648 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh
Confidence 667778888888888999999999999999999987654
No 9
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.3e-17 Score=188.50 Aligned_cols=630 Identities=14% Similarity=0.117 Sum_probs=373.5
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCC----
Q 002084 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL---- 81 (969)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l---- 81 (969)
.+.+.+++.+-- .+||..|+.|++-|.+++|.|.--..+.++...+.. +..||.-||.-||++|.+.|+.-
T Consensus 3 ~~~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~----~l~vrqaaaIYlKN~I~~~W~~~~~~g 77 (1010)
T KOG1991|consen 3 LQSLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGV----PLPVRQAAAIYLKNKITKSWSSHEAPG 77 (1010)
T ss_pred hHHHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHhcCCccCCCC
Confidence 335666666654 456999999999999999999999999999987753 57899999999999999999965
Q ss_pred -----ChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHch-hc-cCCchHHHHHHHhhcccCCCcchHHHHHHHh
Q 002084 82 -----QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (969)
Q Consensus 82 -----~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~-~~-~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~ 154 (969)
+++++..+|+.++..+. .+|..+|.++..++-.+... ++ .||+.++-+-..++++ +.......|..|.
T Consensus 78 ~~~~I~e~dk~~irenIl~~iv---~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~--~~~~vy~aLl~l~ 152 (1010)
T KOG1991|consen 78 RPFGIPEEDKAVIRENILETIV---QVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQ--DANHVYGALLCLY 152 (1010)
T ss_pred CcCCCChHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCc--chhhHHHHHHHHH
Confidence 68999999999999998 46899999999999777654 45 6999999999888874 2334556666666
Q ss_pred hchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccc
Q 002084 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (969)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~ 234 (969)
.|..- ++- + ..+.|.-+...+....|.+++.....+...+. ....+...++|.+.+-+.| ++|.
T Consensus 153 qL~k~---ye~-k---~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~-----~s~el~klIlKifks~~~~----~LP~ 216 (1010)
T KOG1991|consen 153 QLFKT---YEW-K---KDEERQPLGEAVEELFPDILQIFNGLLSQESY-----QSVELQKLILKIFKSLIYY----ELPL 216 (1010)
T ss_pred HHHHH---Hhh-c---cccccccHHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHHHHHHH----hCCH
Confidence 65431 110 1 23466667777777899999988887765421 2356789999999999988 4555
Q ss_pred hhhcccchHHHHHhhcCCCCcHHHHHHHHHHHHhcCCC---------------h---hHHHHhhhhhhHHhhhhhhhccC
Q 002084 235 GSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEG---------------L---PQALLCRVPFLKELLLLPALTDG 296 (969)
Q Consensus 235 ~~i~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~---------------~---~~~l~~~~~~l~~~~~~~~~~~~ 296 (969)
.. .+++.|...++.+..++++.-. + .+..+..+-.+.++|..+.....
T Consensus 217 ~L--------------~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~ 282 (1010)
T KOG1991|consen 217 EL--------------SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVP 282 (1010)
T ss_pred Hh--------------hCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccch
Confidence 43 4566677777777777775410 0 02222222223334431111111
Q ss_pred chhHHhhHHHHHHHHhhhhhHHHHhcChhHHHHHHHHHhccc--CCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhh
Q 002084 297 DEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA--FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKH 374 (969)
Q Consensus 297 d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~lL~~~~--~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~ 374 (969)
+. +.++..|.. ++...+. ..+++.+-+... +- ..+|...++.|-. ..+. ...
T Consensus 283 ~y---~~Fa~~f~~---n~~~~il------e~~lk~l~~~~~~~yl--s~rvl~~~l~fl~---~~Vs---------~~~ 336 (1010)
T KOG1991|consen 283 EY---KEFAQMFLK---NFAQGIL------EVFLKILEQWRQQLYL--SDRVLYYLLNFLE---QCVS---------HAS 336 (1010)
T ss_pred hh---HHHHHHHHH---HHHHHHH------HHHHHHHHHHHhcccC--CHHHHHHHHHHHH---Hhcc---------HHH
Confidence 11 222222221 1221111 011222211111 11 1233334444421 2211 234
Q ss_pred hhhhhHHHHHHHHHHH-HHHccCCCCCCCCCCCCCCCchHHHH-----------HHHHHHHHHHHHHhcCcHH------H
Q 002084 375 VEDMFFSVFSALLDAL-LLRAQVDESSFNDDGMVDLPDGLVQF-----------RMNLVELLVDICQLLRSAT------F 436 (969)
Q Consensus 375 ~~~~~~~~~~~l~~~l-~~k~~~p~~~~~~~~~~~e~d~f~~f-----------R~~~~d~l~~~~~ilg~~~------~ 436 (969)
.+...+|++.-++..+ +.-|.+- |+..+.|+ +|.+|+.+- |-...+++-.++.=-|.+. +
T Consensus 337 twkll~PHl~~ii~~vIFPlmc~~-d~deelwe-~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F 414 (1010)
T KOG1991|consen 337 TWKLLKPHLQVIIQDVIFPLMCFN-DEDEELWE-EDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSF 414 (1010)
T ss_pred HHHHhhhHHHHHHHHhhhhhcCCC-cccHHHHh-cCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 6677889887766544 3444443 32222354 223333221 1223345555554444432 2
Q ss_pred HHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHH-HHHH--hcc--CchhhhhhHHHHHHHHHHH
Q 002084 437 IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAV--LSA--SRSEELKGFMHIVYRSLAD 511 (969)
Q Consensus 437 l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~-ll~~--l~~--~~~~~~~~~~~v~~~t~~~ 511 (969)
+.+++.+...++....+-+..|.||+.++++++.+.+... +...++ ++.. +|. .|. -++|.++ |+
T Consensus 415 ~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~---~~~~mE~flv~hVfP~f~s~~------g~Lrara-c~ 484 (1010)
T KOG1991|consen 415 IVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP---YKSQMEYFLVNHVFPEFQSPY------GYLRARA-CW 484 (1010)
T ss_pred HHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc---hHHHHHHHHHHHhhHhhcCch------hHHHHHH-HH
Confidence 2333333333323445789999999999999987765332 223333 3332 332 332 2378888 59
Q ss_pred HHHhhHHHHHhChhchHHHHHHHHHhcc-cCc--hhHHHHHHHHHHHHHhhcc-cCCCccHHHHHHHHHHHHhcCCChhh
Q 002084 512 VIGSYSKWISAFQTNARPLLLFLAAGIS-EAV--SSNACASALRKICEDASAL-IDEPSNLEILMWIGEALEKRHLPLED 587 (969)
Q Consensus 512 lig~ys~wl~~~p~~L~~~l~~l~~~l~-~~~--~~~~Aa~al~~lc~~c~~~-l~~~~~~~~l~~~~~~l~~~~l~~~~ 587 (969)
+++.|++-=-.+|..+..++....++|. +++ |+.-||-|++.+.+.|... .....+.+..++-.=.+.+ ...+++
T Consensus 485 vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n-e~End~ 563 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN-EVENDD 563 (1010)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH-hcchhH
Confidence 9999996434578899999999999999 444 7889999999999999853 1111245444433222221 233445
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccC
Q 002084 588 EEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (969)
Q Consensus 588 ~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~ 667 (969)
-..+++. ++...+. | ...+--.|++-+.+..-++++...+.+...+. .++ .|..+|+.+.+++..+..
T Consensus 564 Lt~vme~---iV~~fse-E-lsPfA~eL~q~La~~F~k~l~~~~~~~~~~dd----k~i-aA~GiL~Ti~Til~s~e~-- 631 (1010)
T KOG1991|consen 564 LTNVMEK---IVCKFSE-E-LSPFAVELCQNLAETFLKVLQTSEDEDESDDD----KAI-AASGILRTISTILLSLEN-- 631 (1010)
T ss_pred HHHHHHH---HHHHHHH-h-hchhHHHHHHHHHHHHHHHHhccCCCCccchH----HHH-HHHHHHHHHHHHHHHHhc--
Confidence 5555554 4455543 3 45666678888888888887752211111111 112 467778888888777663
Q ss_pred CCCCCCCch--HHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhh
Q 002084 668 PTNPAGDDP--IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFV 737 (969)
Q Consensus 668 ~~~~~~~~p--~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~ 737 (969)
+| ...+-..++|++..++.+ .-.++.|.+|.+.-. .+.+-+.+.|.+=.+.+.+...|.
T Consensus 632 -------~p~vl~~le~~~l~vi~~iL~~---~i~dfyeE~~ei~~~-~t~~~~~Isp~mW~ll~li~e~~~ 692 (1010)
T KOG1991|consen 632 -------HPEVLKQLEPIVLPVIGFILKN---DITDFYEELLEIVSS-LTFLSKEISPIMWGLLELILEVFQ 692 (1010)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhh-hhhhhcccCHHHHHHHHHHHHHHh
Confidence 33 223335567777777762 345778888777644 333333333333334444444444
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.84 E-value=1.2e-14 Score=155.92 Aligned_cols=610 Identities=13% Similarity=0.104 Sum_probs=343.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHH--HHHHHHhhccCCCCCCccchhHHhhhHHHHHHhh-----------
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAA--WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ----------- 75 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~a--W~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~----------- 75 (969)
..+..+.-.-+|||..|..|+..|.++|+..-. -.+..+.|...+ ..++.|..|+.+|++-+.
T Consensus 6 f~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~n----s~~~~Rm~agl~LKN~l~a~d~~~~~~~~ 81 (858)
T COG5215 6 FRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLN----SNDQLRMVAGLILKNSLHANDPELQKGCS 81 (858)
T ss_pred HHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccC----CcHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 334444412268999999999999999997544 234445555544 357999999999999985
Q ss_pred cCcCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH---chhccCCchHHHHHHHhhcccCCCcchHHHHHH
Q 002084 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALI---LRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (969)
Q Consensus 76 ~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~---l~~~~W~~~i~~li~~l~~~~~~~~~~~~lL~~ 152 (969)
.+|-.++.|.++++|...+..|.. ..+.+-+--+..++.++ +-...||++..+++...+..+. .......|.+
T Consensus 82 qrW~~~~~E~k~qvK~~al~aL~s---~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp-~~~k~~sl~~ 157 (858)
T COG5215 82 QRWLGMRHESKEQVKGMALRALKS---PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQP-VSGKCESLGI 157 (858)
T ss_pred HhhccCCHHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCc-hHhHHHHHHH
Confidence 459999999999999999988863 22333343344444444 3333699999999998876432 2233445666
Q ss_pred HhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHH-HHHcccccc
Q 002084 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLS-WVRAGCFTE 231 (969)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~s-Wi~~~~~~~ 231 (969)
+....|-.. + +.+...+..++--+. +....++ ++..++..+|+|+-. -+.... .
T Consensus 158 ~gy~ces~~----------P-------e~li~~sN~il~aiv---~ga~k~e---t~~avRLaaL~aL~dsl~fv~~--n 212 (858)
T COG5215 158 CGYHCESEA----------P-------EDLIQMSNVILFAIV---MGALKNE---TTSAVRLAALKALMDSLMFVQG--N 212 (858)
T ss_pred HHHHhhccC----------H-------HHHHHHhhHHHHHHH---HhhcccC---chHHHHHHHHHHHHHHHHHHHH--h
Confidence 666655331 1 122333333322221 2221111 345689999999865 322110 1
Q ss_pred ccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHH
Q 002084 232 ISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (969)
Q Consensus 232 ~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~ 309 (969)
+..+ ...+-+++.+.++-+.+ ++.-+|..|++.++..+-++.+
T Consensus 213 f~~E-~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~---------------------------------- 257 (858)
T COG5215 213 FCYE-EERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ---------------------------------- 257 (858)
T ss_pred hcch-hhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 1111 12233555555555433 3445556666555543211110
Q ss_pred HHhhhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhh----hhhhHHHHHH
Q 002084 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHV----EDMFFSVFSA 385 (969)
Q Consensus 310 ~~~e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~----~~~~~~~~~~ 385 (969)
+++. ..+..+.-+.+..| +++|...+++||...+|.-.+.+-+. ++.|+. ....+.-...
T Consensus 258 -------~ymE------~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~-~~~pe~p~qn~~fa~aav~d 321 (858)
T COG5215 258 -------SYME------NALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMED-KYLPEVPAQNHGFARAAVAD 321 (858)
T ss_pred -------HHHH------HHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHH-hhcccCchhhcchHHHHHHH
Confidence 0000 12223333444444 57899999999988876532211110 001110 0111222344
Q ss_pred HHHHHHHHccC-CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHH
Q 002084 386 LLDALLLRAQV-DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFAL 464 (969)
Q Consensus 386 l~~~l~~k~~~-p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l 464 (969)
++..+++-+.- .+|-..|+|... ...+-.++-...+.|+ ..++-+.. ..++...+.+|...||+..++
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~s---------maA~sCLqlfaq~~gd-~i~~pVl~-FvEqni~~~~w~nreaavmAf 390 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPS---------MAASSCLQLFAQLKGD-KIMRPVLG-FVEQNIRSESWANREAAVMAF 390 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchh---------hhHHHHHHHHHHHhhh-HhHHHHHH-HHHHhccCchhhhHHHHHHHh
Confidence 55555555443 333223445321 1122223222223332 23332221 111222467899999999999
Q ss_pred HhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--Chh-chHHHHHHHHHhccc-
Q 002084 465 NVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQT-NARPLLLFLAAGISE- 540 (969)
Q Consensus 465 ~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~--~p~-~L~~~l~~l~~~l~~- 540 (969)
|++-++-.++.- .+.+.+.++.+.+...+.. ..+..||+ +.+|+.++++.. +|+ +|++.++..+-|+.+
T Consensus 391 GSvm~gp~~~~l---T~~V~qalp~i~n~m~D~~---l~vk~ttA-wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~ 463 (858)
T COG5215 391 GSVMHGPCEDCL---TKIVPQALPGIENEMSDSC---LWVKSTTA-WCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC 463 (858)
T ss_pred hhhhcCccHHHH---HhhHHhhhHHHHHhcccce---eehhhHHH-HHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc
Confidence 999765543222 1344555555443222111 23667775 999999999876 564 899999999999986
Q ss_pred CchhHHHHHHHHHHHHHhhccc--CCCccHHHHHHHHHHHH----hcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHH
Q 002084 541 AVSSNACASALRKICEDASALI--DEPSNLEILMWIGEALE----KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLAR 614 (969)
Q Consensus 541 ~~~~~~Aa~al~~lc~~c~~~l--~~~~~~~~l~~~~~~l~----~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ 614 (969)
|.....++.++..+.+.-.+.. ...+..++...+...+. ...-+...|...++++|.+|.--|+. ..+.+..
T Consensus 464 p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~--V~~~~a~ 541 (858)
T COG5215 464 PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA--VSDILAG 541 (858)
T ss_pred chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh--HHHHHHH
Confidence 7788889999988876544321 01112223333333332 12234567899999999999888763 4677888
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHh
Q 002084 615 LLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS 694 (969)
Q Consensus 615 ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~ 694 (969)
+.+.+..++.++++...+.-...|... .+-|+ ...+.-|.+++|...++. . .+-.+++.++-+++++
T Consensus 542 ~~~~~~~kl~~~isv~~q~l~~eD~~~-~~elq--SN~~~vl~aiir~~~~~i-------e---~v~D~lm~Lf~r~les 608 (858)
T COG5215 542 FYDYTSKKLDECISVLGQILATEDQLL-VEELQ--SNYIGVLEAIIRTRRRDI-------E---DVEDQLMELFIRILES 608 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHH--HHHHHHHHHHHHhcCCCc-------c---cHHHHHHHHHHHHHhc
Confidence 888889998888765421100111111 11121 234455566776644332 1 2334566777777763
Q ss_pred hhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhh
Q 002084 695 EHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFV 737 (969)
Q Consensus 695 ~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~ 737 (969)
- ...-+-+-+...+.....+++..|..+++.++.++.....
T Consensus 609 -~-~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln 649 (858)
T COG5215 609 -T-KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN 649 (858)
T ss_pred -c-CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 2 2333445667777888888888888888888888887654
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.5e-11 Score=135.38 Aligned_cols=719 Identities=13% Similarity=0.114 Sum_probs=364.9
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCC----
Q 002084 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (969)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~---- 80 (969)
..+++-+.+..-- .|||+.|+.|++.|++.+..+.-=-....|+.++. .+.++|.-||..+|+.|+++|..
T Consensus 3 ~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~----~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 3 NLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQ----QDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred cHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccC----cChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 4556666666533 57899999999999999987432233455665543 46899999999999999999984
Q ss_pred ---CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHch-hc-cCCchHHHHHHHhhcccCCCcchHHHHHHHhh
Q 002084 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (969)
Q Consensus 81 ---l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~-~~-~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~ 155 (969)
+.+++++.+|..++.... +.|..|..||+.||+.++-+ +| .||+.+++++.+++++ +-+.....|..-..
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl---~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~--D~~~~~gVL~tahs 152 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLML---SSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG--DFNVINGVLVTAHS 152 (960)
T ss_pred ccccchhHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc--chHHHHHHHHHHHH
Confidence 456678888888877665 45678999999999999976 45 6999999999999863 22223333332221
Q ss_pred chhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccch
Q 002084 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (969)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~ 235 (969)
+ +-..|... -+++--.+++..+...+....+++.+..+...... ++. . .++.|...-
T Consensus 153 i---Fkr~R~ef--rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~---~~~----~---~l~~lf~vl-------- 209 (960)
T KOG1992|consen 153 I---FKRYRPEF--RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHA---NDA----A---ALNILFGVL-------- 209 (960)
T ss_pred H---HHhcCccc--ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcc---cch----h---HHHHHHHHH--------
Confidence 1 11111110 12233334444444444455555544332211000 011 1 344554410
Q ss_pred hhcccchHHHHHhhcCC---CCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCch------hHHhhHHH
Q 002084 236 SLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDE------KVIGGLAC 306 (969)
Q Consensus 236 ~i~~~~ll~~~~~~L~~---~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~------d~~~~l~~ 306 (969)
-++.-+|..|.- ||.||.=++.-.. ..+.+. .|.++....+++ +.-..+|.
T Consensus 210 -----ll~~klfysLn~QDiPEFFEdnm~~wM~--------------~F~k~l-~~~~p~le~~~ee~~~l~~lka~ICE 269 (960)
T KOG1992|consen 210 -----LLICKLFYSLNFQDIPEFFEDNMKTWMG--------------AFHKLL-TYDNPLLESDEEEATVLDKLKAQICE 269 (960)
T ss_pred -----HHHHHHHHhhhcccchHHHHhhHHHHHH--------------HHHHHH-hccCcccccCcccccHHHHHHHHHHH
Confidence 133444545542 3444332211111 111100 011122222111 11124555
Q ss_pred HHHHHhhhhhHHHHhcChhH-HHHHHHHHhcccCCCCCch-hhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHH-
Q 002084 307 LMSEIGQAAPSLIVEASPEA-LALADALLSCVAFPSEDWE-IADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVF- 383 (969)
Q Consensus 307 l~~~~~e~~~~~l~~~~~~~-~~ll~~lL~~~~~p~~d~~-v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~- 383 (969)
+|+-..+.|-.-+..--+++ .....+|...+..|. |+ .+.-++.|-...++ .+.|..+|
T Consensus 270 i~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~k--yD~Lvs~Al~FLt~V~~----------------r~~y~~~F~ 331 (960)
T KOG1992|consen 270 IFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTK--YDYLVSKALQFLTSVSR----------------RPHYAELFE 331 (960)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHHHHh----------------hhhhHhhhc
Confidence 55544444422221001122 234566666666664 44 34457777554433 13344444
Q ss_pred -HHHHHHHHHHccCCCCCCC--CCCCC-C----------CCchHHHHHHHHHHHHHHHHHhcCcH--HHH----HHHHhh
Q 002084 384 -SALLDALLLRAQVDESSFN--DDGMV-D----------LPDGLVQFRMNLVELLVDICQLLRSA--TFI----QKVFFG 443 (969)
Q Consensus 384 -~~l~~~l~~k~~~p~~~~~--~~~~~-~----------e~d~f~~fR~~~~d~l~~~~~ilg~~--~~l----~~l~~~ 443 (969)
.+++..+..++..|.-..- |++.- | |+.|-..-|+...|+++-.+..-... .++ +.++++
T Consensus 332 ~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~ 411 (960)
T KOG1992|consen 332 GENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQ 411 (960)
T ss_pred chHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 4666777777777643211 10000 1 11122223566678888877543221 122 233333
Q ss_pred hhcCCCCCCChhHhHHHHHHHHhhhhcc-------ccCCcccchhHHH--HHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 002084 444 SWGSANVPIPWKEVETKLFALNVVSEVV-------LQEGQAFDFSVIM--QLVAVLSASRSEELKGFMHIVYRSLADVIG 514 (969)
Q Consensus 444 ~~~~~~~~~~W~~~Ea~Lf~l~~iae~~-------~~~~~~~~l~~i~--~ll~~l~~~~~~~~~~~~~v~~~t~~~lig 514 (969)
.. .+++.+|...+.++|++.++|-.. ...+.-.++...+ +++..|.+ |. ...++-+++.++ ..+
T Consensus 412 y~--~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s-~~--vn~~pilka~aI-Ky~- 484 (960)
T KOG1992|consen 412 YS--KNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLS-PN--VNEFPILKADAI-KYI- 484 (960)
T ss_pred hc--cCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhcc-Cc--cccccchhhccc-cee-
Confidence 32 245678999999999999986432 2111111111111 12333322 00 000111333332 222
Q ss_pred hhHHHHHh--ChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhc---ccCCCcc-----HHHHHHHHHHHHhcC
Q 002084 515 SYSKWISA--FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASA---LIDEPSN-----LEILMWIGEALEKRH 582 (969)
Q Consensus 515 ~ys~wl~~--~p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~---~l~~~~~-----~~~l~~~~~~l~~~~ 582 (969)
--|.+ .|++|...++-+..++..+. +-+-||.++.++-.-|.. .+..+.. ...+.++...+..+.
T Consensus 485 ---~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~ 561 (960)
T KOG1992|consen 485 ---YTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPG 561 (960)
T ss_pred ---eeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCc
Confidence 11333 46789999999999998643 678889998887766655 3322222 223334443332221
Q ss_pred CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhccc
Q 002084 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSH 662 (969)
Q Consensus 583 l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~ 662 (969)
..+.+.++++|-++++..++.- . ....+++..+.+++.....+. .+|.-. .-..+.++.+++.
T Consensus 562 --~~EneylmKaImRii~i~~~~i--~----p~~~~~l~~Lteiv~~v~KNP--s~P~fn-------HYLFEsi~~li~~ 624 (960)
T KOG1992|consen 562 --KAENEYLMKAIMRIISILQSAI--I----PHAPELLRQLTEIVEEVSKNP--SNPQFN-------HYLFESIGLLIRK 624 (960)
T ss_pred --ccccHHHHHHHHHHHHhCHHhh--h----hhhhHHHHHHHHHHHHHhcCC--CCchhH-------HHHHHHHHHHHHH
Confidence 2567899999999999876532 2 233444455555555432221 123211 1224555666655
Q ss_pred ccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh----hhHhhHHHHHHHHHHhhhh
Q 002084 663 LPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ----HFVTLLPQVLDCLSTNFVS 738 (969)
Q Consensus 663 l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~----~~~p~l~~l~~~l~~~~~~ 738 (969)
.... ...-+...-..++|++..++.+ .-.+++--+..++...+...+. ++.+++|++++-- ....
T Consensus 625 t~~~------~~~~vs~~e~aL~p~fq~Il~e---DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~--lW~r 693 (960)
T KOG1992|consen 625 TCKA------NPSAVSSLEEALFPVFQTILSE---DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPN--LWKR 693 (960)
T ss_pred Hhcc------CchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHH--HHhh
Confidence 3321 1111223457788999998863 2234444444455444444333 4555555543322 2333
Q ss_pred hcCcccHHHHHHHHHHHhcCCC----CcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHH
Q 002084 739 FQNHECYIRTASVVIEEFGHKD----EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVL 814 (969)
Q Consensus 739 ~~~~~~~L~l~~~li~~~g~~~----~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll 814 (969)
+...+..+.++..++.. |... +..+.+...|..+ ..+ +-.=+..|.++++++...|...+
T Consensus 694 ~gNipalvrLl~aflk~-g~~~~~~~~~l~~iLGifqkL---------iaS------ka~Dh~GF~LLn~i~~~~~~~~~ 757 (960)
T KOG1992|consen 694 SGNIPALVRLLQAFLKT-GSQIVEAADKLSGILGIFQKL---------IAS------KANDHHGFYLLNTIIESIPPNEL 757 (960)
T ss_pred cCCcHHHHHHHHHHHhc-CchhhcccccchhHHHHHHHH---------hcC------cccchhHHHHHHHHHhcCCHhhh
Confidence 43566666777776643 2211 1112222333322 211 11223567888888888766544
Q ss_pred hccccchHHHHHHHHHhhccCchhH-HHHHHHHHHHHH
Q 002084 815 AASGALLEVSFQKAAICCTAMHRGA-ALAAMSYLSCFL 851 (969)
Q Consensus 815 ~~~~~~l~~i~~~~l~~l~~~e~~~-~~a~~~Fl~~li 851 (969)
. +.+.+++...+.-++....+- .+...-|+..+.
T Consensus 758 ~---py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ 792 (960)
T KOG1992|consen 758 A---PYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFT 792 (960)
T ss_pred h---HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 3 456666665555555333222 344444444333
No 12
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.7e-09 Score=118.87 Aligned_cols=800 Identities=12% Similarity=0.132 Sum_probs=401.7
Q ss_pred chHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCC
Q 002084 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (969)
Q Consensus 3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~ 82 (969)
|+..++++..-..||.+.|+.+|.+|++-|.+|-.||+.-+-|.-||...+. +..+..|+.+|-..+. +-..+|
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~-----pYs~mlAst~L~Klvs-~~t~lp 74 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY-----PYSQMLASTCLMKLVS-RKTPLP 74 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-----chHHHHHHHHHHHHHc-CCCCCc
Confidence 3478899999999999999999999999999999999999999999988654 5788889888865555 445899
Q ss_pred hHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHchhc--------cCCchHHHHHHHhhcccCCCcchHHHHHHH
Q 002084 83 SAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAV--------EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (969)
Q Consensus 83 ~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~l~~~--------~W~~~i~~li~~l~~~~~~~~~~~~lL~~L 153 (969)
-+++..||+.+++++..-. .-+++|+.-||..+|.+...-+ ...++|.++...++.+ +.+.+.+.+.+|
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~--~ve~~~igv~iL 152 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMD--NVEHCIIGVQIL 152 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccC--chHHHHHHHHHH
Confidence 9999999999999997521 2347899999999998877643 1357788888877653 356678899999
Q ss_pred hhchhccccccccccCCCHHHHHHHHHHHHh-hhhHHHHHHHHhHhhccCCCCCcc-----hhhhHHHHHHHHHH-HHHc
Q 002084 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQ-----LHDRNRKILRCLLS-WVRA 226 (969)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~-----~~~~~~~~l~cl~s-Wi~~ 226 (969)
+.|..|+..... ..+..+++++...++. ..-+|+.+-.+.+....+-++... ...+.+..++|+.- +|.-
T Consensus 153 sqLvqemN~~~~---~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 153 SQLVQEMNQADG---MDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHHHHHhhCCCC---CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccc
Confidence 999999964332 2345666677766666 445666655454444321111000 12345677788751 2211
Q ss_pred c--------ccccccch---hhcccchHHHHHhhcCC--CCcHHHHHHHHHHHHhcCC---------ChhHHHHhhhhhh
Q 002084 227 G--------CFTEISQG---SLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHE---------GLPQALLCRVPFL 284 (969)
Q Consensus 227 ~--------~~~~~~~~---~i~~~~ll~~~~~~L~~--~~~~~~a~~~l~ei~~~~~---------~~~~~l~~~~~~l 284 (969)
. |...||.+ .+..+..++..|+..+. +++.+.|.+|++.+-+-.+ +|.+.++..+..
T Consensus 230 s~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~- 308 (1082)
T KOG1410|consen 230 STDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKR- 308 (1082)
T ss_pred ccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-
Confidence 0 00122221 12335567888877764 5788999999998776432 233444443332
Q ss_pred HHhhhhhhhccCchhHHhhHHHHHHHHhhhh-hHHHHhcChhHHHHHHHHHhcccCCCCCch----hhhhhHHHHHHHHH
Q 002084 285 KELLLLPALTDGDEKVIGGLACLMSEIGQAA-PSLIVEASPEALALADALLSCVAFPSEDWE----IADSTLQFWSTLAS 359 (969)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~-~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~----v~~~~~~FW~~l~e 359 (969)
.+.+ .-.-.|.+....+||++.-+-.+| ..-++.-+ ..-..+.++..+|--....++ -..-.+.||.++..
T Consensus 309 --il~n-p~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~-~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmva 384 (1082)
T KOG1410|consen 309 --ILEN-PQGLSDPANYHEFCRLLARLKTNYQLGELVKVE-CYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVA 384 (1082)
T ss_pred --HHhC-CcCCCCcchHHHHHHHHHHHHhhhhhHhhhccC-CcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHh
Confidence 2221 222356777788888887664443 11111111 111122222221100000011 22346789999876
Q ss_pred HhhccchhhhhhhhhhhhhhHHHHHH-HHHHHHHHcc--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcH--
Q 002084 360 YILGLDASIAKNKKHVEDMFFSVFSA-LLDALLLRAQ--VDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA-- 434 (969)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~k~~--~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~-- 434 (969)
.+--.... .|...+.|-|-+.+ .+..=+..++ .|++.+ +-.|+- . .+.+.+...+.+-+.+
T Consensus 385 SVPyvk~~----~phlLd~y~PeIt~afi~SRl~sV~~ivrd~~d------~PLdd~-~---~~~q~le~l~~icRceYE 450 (1082)
T KOG1410|consen 385 SVPYVKNT----EPHLLDTYCPEITKAFITSRLQSVEIIVRDGLD------DPLDDT-G---AVQQQLEQLATICRCEYE 450 (1082)
T ss_pred cCCcccCC----ChHHHhhhcHHHHHHHHHHHhhhhheecccCCC------Ccchhh-H---HHHHHHHHhhhhhhhhHh
Confidence 54211111 12334444432211 1111122222 233311 111111 1 1112222222221111
Q ss_pred ---HHHHHHHhh-------hhc-CCCCCCChhHhHHH----HHHHHhhhh-ccc---cCCc-ccc---hhHHHHHHH---
Q 002084 435 ---TFIQKVFFG-------SWG-SANVPIPWKEVETK----LFALNVVSE-VVL---QEGQ-AFD---FSVIMQLVA--- 488 (969)
Q Consensus 435 ---~~l~~l~~~-------~~~-~~~~~~~W~~~Ea~----Lf~l~~iae-~~~---~~~~-~~~---l~~i~~ll~--- 488 (969)
.++.++++. +.. ...++.+-.-.|+- .|.++++.. .+. .|+. .-+ ...+++++.
T Consensus 451 kTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL~arvlql~nlmd 530 (1082)
T KOG1410|consen 451 KTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGELSARVLQLVNLMD 530 (1082)
T ss_pred hHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHHHHHHHHHHHhhh
Confidence 123333322 221 11223334444544 355555422 221 1111 000 123444443
Q ss_pred -HhccCchhhhh-hHH----HHHHHHH-------HHHHHhhHHHHH--hChhchHHHHHHHHHhccc----CchhHHHHH
Q 002084 489 -VLSASRSEELK-GFM----HIVYRSL-------ADVIGSYSKWIS--AFQTNARPLLLFLAAGISE----AVSSNACAS 549 (969)
Q Consensus 489 -~l~~~~~~~~~-~~~----~v~~~t~-------~~lig~ys~wl~--~~p~~L~~~l~~l~~~l~~----~~~~~~Aa~ 549 (969)
.+|.....+.. .+. ..|.+-+ ..+-.+.++-+. .|...|..++..+...+.- ..+.+..-.
T Consensus 531 sr~~~~~n~rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLs 610 (1082)
T KOG1410|consen 531 SRLPLKGNERLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTLS 610 (1082)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHHH
Confidence 23322222110 000 0011000 122233333222 2334566666666655541 224444444
Q ss_pred HHHHHHHHhh--cccCCCccHHHHHH-HH-HHH--HhcC---CChhhHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHH
Q 002084 550 ALRKICEDAS--ALIDEPSNLEILMW-IG-EAL--EKRH---LPLEDEEEVVGAISLILGSV-SNKELKNNLLARLLSSS 619 (969)
Q Consensus 550 al~~lc~~c~--~~l~~~~~~~~l~~-~~-~~l--~~~~---l~~~~~~~l~eai~~ii~~l-p~~~~~~~~l~~ll~p~ 619 (969)
-|..+.-.-. +.|..-.....+++ .. +.+ .+.. -+...|...|+++|.++-.- .+++ .-+++++.|+
T Consensus 611 lf~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sede---~~fe~fm~PL 687 (1082)
T KOG1410|consen 611 LFNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSEDE---DMFERFMLPL 687 (1082)
T ss_pred HHHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhcccccH---HHHHHHHHHH
Confidence 4444443221 11110001111110 00 000 0011 12446788999999998663 3333 3478999999
Q ss_pred HHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHH----HhHHHHHHHHHHhh
Q 002084 620 YEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL----RVFWPMLEKLFRSE 695 (969)
Q Consensus 620 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~----~~i~~~l~~il~~~ 695 (969)
...++.+++.-+++-.+ .+.. .+.+-.|..=+|++.-+.. ..-.+.-.+ -..+|++....+ +
T Consensus 688 t~~fe~v~~~~~nn~f~--ee~v-------K~~liGL~RDLRGiA~A~~----tktsy~~LFdWmYP~~mpllq~~Ve-~ 753 (1082)
T KOG1410|consen 688 TDAFEGVLQVFQNNCFE--EEQV-------KRILIGLCRDLRGIAFASN----TKTSYQMLFDWMYPEYMPLLQRAVE-K 753 (1082)
T ss_pred HHHHHHHHHHhcccccc--HHHH-------HHHHHHHHHHhhhhhhhhc----cchHHHHHHHHhhhhHHHHHHHHHH-h
Confidence 99998877765332111 1111 1222223322333322211 111121222 456778888777 7
Q ss_pred hccchHHHHHHHHHHHHHHHh----hhhh------------hHhhHHHHHHHHHH--------hhh-hhcC-cccHHHHH
Q 002084 696 HMENGNLSTAACRALSLAIQS----SGQH------------FVTLLPQVLDCLST--------NFV-SFQN-HECYIRTA 749 (969)
Q Consensus 696 ~~~~~~v~e~~c~~l~~~~~~----~~~~------------~~p~l~~l~~~l~~--------~~~-~~~~-~~~~L~l~ 749 (969)
|.++++++.-+.+++...+.. +..+ ...++..-=+.+.+ .|. +... ..||.-+-
T Consensus 754 W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk 833 (1082)
T KOG1410|consen 754 WYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILK 833 (1082)
T ss_pred cCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHH
Confidence 999998887776666555432 1000 11111111111110 010 0001 12232233
Q ss_pred HHHHHHh---cCCCCcc-hhHHHHHHHHhhHHHHHHhhc--CCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHH
Q 002084 750 SVVIEEF---GHKDEYG-PLFVTTFERFSQAASVRALNS--SYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEV 823 (969)
Q Consensus 750 ~~li~~~---g~~~~~~-~~~~~l~~~l~~~~~l~~l~~--~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~ 823 (969)
+.+...| |-=.-+. ..+.+.+..+. .++.+ ..++-+++-+.++||+|+..+.+.+-..+....++.+..
T Consensus 834 ~AL~GnYv~FGVFrLYGD~~l~daL~~fv-----Km~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ 908 (1082)
T KOG1410|consen 834 NALSGNYVNFGVFRLYGDSALDDALQTFV-----KMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMY 908 (1082)
T ss_pred HHhhcCccccceeeeeCchHHHHHHHHHH-----HHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHH
Confidence 3333222 1100011 12333333221 11111 235567899999999999999988766666554466666
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHhhh
Q 002084 824 SFQKAAICCTAMHRGAALAAMSYLSCFLEEC 854 (969)
Q Consensus 824 i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~ 854 (969)
++...-.+++.-+.-...++|.-+..+++.-
T Consensus 909 ll~Si~sGLt~lDt~v~ssccsslD~i~tYl 939 (1082)
T KOG1410|consen 909 LLRSISSGLTSLDTIVSSSCCSSLDTIVTYL 939 (1082)
T ss_pred HHHHHHhccchhhHHHHhHHHHHHHHHHHHH
Confidence 6666667777777777777777666666543
No 13
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.62 E-value=3.3e-15 Score=145.04 Aligned_cols=146 Identities=27% Similarity=0.396 Sum_probs=125.0
Q ss_pred ChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHH
Q 002084 104 PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQE 181 (969)
Q Consensus 104 ~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~ 181 (969)
|++|++|+|.+++.++.+.+ .||++++++++.+++ ++......|.+|+.++||+.+..+.. ++.++|.++.+.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~---~~~~~~~~L~iL~~l~eEi~~~~~~~--~~~~r~~~l~~~ 75 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS---SPQHLELVLRILRILPEEITDFRRSS--LSQERRRELKDA 75 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHTSHCCH--SHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHhhhchh--hhHHHHHHHHHH
Confidence 68999999999999999985 799999999999987 34567899999999999998633333 677899999999
Q ss_pred HHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCCCcHHHHHH
Q 002084 182 LLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIE 261 (969)
Q Consensus 182 l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~~~~~~a~~ 261 (969)
+..+.+.|++++.++++...+. .+..+...+|+|+.+|+. +++.+.+.++++++.+|+.|.+++++++|+|
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~----~~~~~~~~~L~~l~s~i~-----~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~ 146 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSE----ANEELVKAALKCLKSWIS-----WIPIELIINSNLLNLIFQLLQSPELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHC----CHHHHHHHHHHHHHHHTT-----TS-HHHHHSSSHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHHH-----hCCHHHhccHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999998875421 125688999999999999 5688888888899999999999999999999
Q ss_pred HH
Q 002084 262 VL 263 (969)
Q Consensus 262 ~l 263 (969)
|+
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 96
No 14
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.2e-08 Score=109.79 Aligned_cols=623 Identities=12% Similarity=0.046 Sum_probs=309.9
Q ss_pred CCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCC-----ChHHHHHHHHHH
Q 002084 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL-----QSAAKDALLNAL 93 (969)
Q Consensus 19 ~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l-----~~~~~~~Lr~~L 93 (969)
..|+..|+.|+.-|.+++|.|.--..+..++..+. .+.++|.-||.-+++||.+.|+.. +++.+.+.|+.+
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de----~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~l 89 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDE----GDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYL 89 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhcc----CCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHH
Confidence 56888999999999999999999999999998875 358999999999999999999973 345566666666
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHHHchhc---cCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccC
Q 002084 94 LVAAKRF-SSGPPQLLTQICLALSALILRAV---EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCN 169 (969)
Q Consensus 94 l~~l~~~-~~~~~~v~~kL~~aLa~l~l~~~---~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~ 169 (969)
++.+... -.+|...|+.+..++..++-.-. -|+ ..+-....+.++ ........|..+ +|+.+.-+.+
T Consensus 90 ienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~--ea~~vy~gLlcl----~elfkayRwk-- 160 (970)
T COG5656 90 IENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS--EANHVYTGLLCL----EELFKAYRWK-- 160 (970)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc--chhHHHHHHHHH----HHHHHHHhhh--
Confidence 6655542 25676777777766655543322 266 555555555553 222333444433 4454333333
Q ss_pred CCHHHHHHHHHHHH-hhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHh
Q 002084 170 ISSAHRSQYGQELL-SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFN 248 (969)
Q Consensus 170 l~~~~r~~~~~~l~-~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~ 248 (969)
+.. +| +....+. +-.|.+.++-..... .++.+ ..++...+||.+.+-..+ .+|...
T Consensus 161 ~nd-eq-~di~~li~alfpile~~g~nl~s-~~ny~----s~e~l~LILk~fKsvcy~----~LP~~l------------ 217 (970)
T COG5656 161 YND-EQ-VDILMLITALFPILEKVGGNLES-QGNYG----SVETLMLILKSFKSVCYY----SLPDFL------------ 217 (970)
T ss_pred ccc-hH-hhHHHHHHHhhHHHHHHhhcccc-CCchh----HHHHHHHHHHHHHHHHHh----hCCHHH------------
Confidence 332 22 2233333 344555544333322 22221 245677888888887765 344432
Q ss_pred hcCCCCcHHHHHHHHHHHHhcCC---------------Chh---HHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHH
Q 002084 249 SLQVQSSFDVAIEVLVELVGRHE---------------GLP---QALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSE 310 (969)
Q Consensus 249 ~L~~~~~~~~a~~~l~ei~~~~~---------------~~~---~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~ 310 (969)
+.++.+-..+.....++++.- .+. +.-+-.+..+.++|...............++..+..
T Consensus 218 --sa~e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~ 295 (970)
T COG5656 218 --SAIETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPM 295 (970)
T ss_pred --ccchhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 223333334444444444321 010 111111111222221111111111122223333333
Q ss_pred HhhhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHH
Q 002084 311 IGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDAL 390 (969)
Q Consensus 311 ~~e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 390 (969)
+.+.+...+..-. . | ..=.+.+.+-|-..|.|.... ..+.+...+|++.=++...
T Consensus 296 il~tffkqie~wg--------------q--g-qLWlsd~~LYfi~~Fve~cv~--------~d~tw~l~ePhlq~ii~~v 350 (970)
T COG5656 296 ILATFFKQIEEWG--------------Q--G-QLWLSDIELYFIDFFVELCVD--------ADQTWRLMEPHLQYIISGV 350 (970)
T ss_pred HHHHHHHHHHHhh--------------c--C-CeecchHHHHHHHHHHHHHhh--------hHhhHhhhccHHHHHHHhh
Confidence 3333333332111 1 0 111233344444444443221 1235667788866555444
Q ss_pred HHHccCCCCCCCCCCCCCCCchHHHHH---------HHHHHH-HHHHHHhcCcHHHHHHHH----hhh---hcCCCCCCC
Q 002084 391 LLRAQVDESSFNDDGMVDLPDGLVQFR---------MNLVEL-LVDICQLLRSATFIQKVF----FGS---WGSANVPIP 453 (969)
Q Consensus 391 ~~k~~~p~~~~~~~~~~~e~d~f~~fR---------~~~~d~-l~~~~~ilg~~~~l~~l~----~~~---~~~~~~~~~ 453 (969)
+--+-.+.++..+.|+ +|.++|-.-. -+++-+ +.-.+..=+++..++-++ +.+ ...+.+-.+
T Consensus 351 IfPllc~see~eElfE-nDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dn 429 (970)
T COG5656 351 IFPLLCLSEEEEELFE-NDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDN 429 (970)
T ss_pred hhhhcCCChhhHHHHh-cCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCcccc
Confidence 3333223332222343 3344443221 122211 111111112223333222 222 111212245
Q ss_pred hhHhHHHHHHHHhhhhccccCCcccchhHHHH-HHHH--hccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHH
Q 002084 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAV--LSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPL 530 (969)
Q Consensus 454 W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~-ll~~--l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~ 530 (969)
-++.|.|++.+.++..-+.. +++ +..+++ ++.. +|.... + . -.++.++ |+++++|+.=++ .+..+..+
T Consensus 430 arq~egalr~lasi~s~itk-~sp--~an~me~fiv~hv~P~f~s-~-y--gfL~Sra-ce~is~~eeDfk-d~~ill~a 500 (970)
T COG5656 430 ARQAEGALRLLASIKSFITK-MSP--AANVMEYFIVNHVIPAFRS-N-Y--GFLKSRA-CEFISTIEEDFK-DNGILLEA 500 (970)
T ss_pred HHHHhhHHHHHHHHHHHhcc-Cch--HHHHHHHHHHHHhhHhhcC-c-c--cchHHHH-HHHHHHHHHhcc-cchHHHHH
Confidence 78999999999999885543 332 345555 2322 232211 1 1 1256666 599999965443 45567777
Q ss_pred HHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHH
Q 002084 531 LLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELK 608 (969)
Q Consensus 531 l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~ 608 (969)
.+....++.+.. |+-.||.|++-+-.+-..+.....|.|..++-.-.+.+ ..+.+....+++++ ++..++ + .
T Consensus 501 ye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn-~feiD~LS~vMe~f---Ve~fse-E-L 574 (970)
T COG5656 501 YENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSN-TFEIDPLSMVMESF---VEYFSE-E-L 574 (970)
T ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcc-cccchHHHHHHHHH---HHHhHH-h-h
Confidence 777777777643 78889999998876554332212244443333322221 22334444455442 222221 1 2
Q ss_pred HHHHHHHHHHHHHHHHhhh----cccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhH
Q 002084 609 NNLLARLLSSSYEAIGKLI----DGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVF 684 (969)
Q Consensus 609 ~~~l~~ll~p~~~~l~~~~----~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i 684 (969)
..+-..|.+.+.++.-++. ...++..+.. . ..++ .|...|..+.+++-+++.. ++.....-+..
T Consensus 575 spfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~v--D--DKqm-aasGiL~T~~smiLSlen~-------p~vLk~le~sl 642 (970)
T COG5656 575 SPFAPELAGSLVRQFLKIAQSLLENSSDTSSVV--D--DKQM-AASGILRTIESMILSLENR-------PLVLKYLEVSL 642 (970)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCccccccc--c--HHHH-HHHHHHHHHHHHHHhcccc-------hHHHHHHHHHH
Confidence 3333344444444333333 2221111111 1 1112 3566677777766665532 12233445778
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhh
Q 002084 685 WPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736 (969)
Q Consensus 685 ~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~ 736 (969)
.|+++-++.+ .-.++...+|.++... +-......|..+.+.+.+....
T Consensus 643 ypvi~Filkn---~i~dfy~Ea~dildg~-tf~skeI~pimwgi~Ell~~~l 690 (970)
T COG5656 643 YPVISFILKN---EISDFYQEALDILDGY-TFMSKEIEPIMWGIFELLLNLL 690 (970)
T ss_pred HHHHHHHHhh---hHHHHHHHHHHHHhhh-hHHHHHhhhhhhHHHHHHHhcc
Confidence 8999988852 3455666777776533 2233345577777777776543
No 15
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.46 E-value=1.2e-07 Score=108.80 Aligned_cols=624 Identities=15% Similarity=0.125 Sum_probs=309.3
Q ss_pred CCChHHHHHHHHHHHHHhcChHHH-HHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCC----------ChHHHH
Q 002084 19 DTESCNRVAANQWLVQFQQTDAAW-EIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL----------QSAAKD 87 (969)
Q Consensus 19 ~~d~~~~~~A~~~L~~~Q~s~~aW-~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l----------~~~~~~ 87 (969)
++|+..|.+|+.-|.++-.+++-- .+|+-..+.. .+...|.+|+..|+.-|.++|... +++.+.
T Consensus 15 s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~-----~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~ 89 (1005)
T KOG2274|consen 15 SADQNVRSQAETQLKQLELTEGFGVALAEVAANKD-----ASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKA 89 (1005)
T ss_pred CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcc-----cCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHH
Confidence 679999999999999999987632 2344334332 357899999999999999999854 346678
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHch-hc-cCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccc
Q 002084 88 ALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (969)
Q Consensus 88 ~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~-~~-~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~ 165 (969)
-+|+.|++.+. +.++.+++-.+.+++.++-- +| .||..++-+..+++++ +.+.....+++|..+..|+.....
T Consensus 90 ~IRe~Ll~~l~---~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~--n~n~i~~am~vL~el~~ev~~ee~ 164 (1005)
T KOG2274|consen 90 LIREQLLNLLD---DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSG--NENSIHGAMRVLAELSDEVDVEEM 164 (1005)
T ss_pred HHHHHHHhhhh---ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhcc--chhhhhhHHHHHHHHHHHHHHHHH
Confidence 88998888776 56677888888888888644 44 5999999888988863 445566777777777666631100
Q ss_pred cccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHH
Q 002084 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245 (969)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~ 245 (969)
.- .+... ...+..++.+... + +...+..+. .-+++..
T Consensus 165 ~~--~~~~~--------l~~m~~~f~~~~~---~---------s~~~~~~aa---------------------~~~lf~s 201 (1005)
T KOG2274|consen 165 FF--VGPVS--------LAEMYRIFALTIV---Y---------SIITRLGAA---------------------RGKLFTS 201 (1005)
T ss_pred hc--ccccc--------hhhhhhhhhhccc---c---------chhHHHHhh---------------------hhHHHHH
Confidence 00 01000 0011112211100 0 000110000 0011111
Q ss_pred HHhhcCC-CCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhcc-CchhHHhhHHHHHHHHhhhhhHHHHhcC
Q 002084 246 VFNSLQV-QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTD-GDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (969)
Q Consensus 246 ~~~~L~~-~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~d~d~~~~l~~l~~~~~e~~~~~l~~~~ 323 (969)
++..+.+ .+.....+.+ +...+++..+...+... .... .|.-......+.++.+++++..++..-.
T Consensus 202 c~~li~~~~e~~~~~~~~----------~~s~~l~~~~~~l~h~l--~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~ 269 (1005)
T KOG2274|consen 202 CLTLITNVEEVWAEHVKV----------FLSQILNQFMDILEHPL--QRNDGSDFSLRMEILKCLTQLVENFPSLINPFM 269 (1005)
T ss_pred HHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhh--cccccchHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 1111111 0111111111 22233333333222221 1111 2333445566777888887766664210
Q ss_pred ----hhHHHHHHHH-----HhcccCCCCCchh-------h-------hhhHHHHHHHHHHhhccchhhhhhhhhhhhhhH
Q 002084 324 ----PEALALADAL-----LSCVAFPSEDWEI-------A-------DSTLQFWSTLASYILGLDASIAKNKKHVEDMFF 380 (969)
Q Consensus 324 ----~~~~~ll~~l-----L~~~~~p~~d~~v-------~-------~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~ 380 (969)
+.....+..+ ..-+.+.+.+++. . -..++|-..+.....- . .....
T Consensus 270 ~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~-~-------~ti~~--- 338 (1005)
T KOG2274|consen 270 MGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFL-S-------KTIKK--- 338 (1005)
T ss_pred HhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHH-H-------HHhhh---
Confidence 0001111111 1111111111111 1 1245665554433210 0 01111
Q ss_pred HHHHHHHHHHHHHccCCCC---CCCC---CCCCCCCchHHHHHHHHHHHHHHHHHhcCcHH--HHHHH-Hhhhhc-----
Q 002084 381 SVFSALLDALLLRAQVDES---SFND---DGMVDLPDGLVQFRMNLVELLVDICQLLRSAT--FIQKV-FFGSWG----- 446 (969)
Q Consensus 381 ~~~~~l~~~l~~k~~~p~~---~~~~---~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~--~l~~l-~~~~~~----- 446 (969)
.+..++..++.-++.+++ .|.. ..-.+|.+. ..-|..+.|.+..+..-.|... -+.+. -..+..
T Consensus 339 -~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~ 416 (1005)
T KOG2274|consen 339 -NLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATY 416 (1005)
T ss_pred -hhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 111222222222222221 0100 000012222 5667888888888887777653 11221 111111
Q ss_pred CCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh
Q 002084 447 SANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT 525 (969)
Q Consensus 447 ~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~-~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~ 525 (969)
..+++..|---|++++...++......++. +..+...+.... .+.. +++..+. +.+++.|++=+--+|+
T Consensus 417 ~~~~~~~wk~qea~l~a~~~~~~~~~~dd~---l~~l~~~~~~~l~~~e~------P~Ll~Ra-~~~i~~fs~~~~~~~~ 486 (1005)
T KOG2274|consen 417 LFNNESWWKIQEALLVAAESVRIDDANDDK---LIELTIMIDNGLVYQES------PFLLLRA-FLTISKFSSSTVINPQ 486 (1005)
T ss_pred HhcchHHHHHHHHHHHHHhhcccCcchHHH---HHHHHHHHHhhcccccC------HHHHHHH-HHHHHHHHhhhccchh
Confidence 113455699999999999988733221111 223333333322 1111 1233334 5899988887777899
Q ss_pred chHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCch
Q 002084 526 NARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (969)
Q Consensus 526 ~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~ 605 (969)
.+...++..+.+++-........+|++.+|--|+.+... ++.|.++...-.+. ++-+.+....++|+++.++.--|..
T Consensus 487 ~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~-~~~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef 564 (1005)
T KOG2274|consen 487 LLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLL-SLQPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEF 564 (1005)
T ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceecc-ccchHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhh
Confidence 999999999988885433444555566666666665432 24444444333221 2334555666667766666543321
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHH
Q 002084 606 ELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFW 685 (969)
Q Consensus 606 ~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~ 685 (969)
...++.. +.
T Consensus 565 ---~as~~sk--------------------------------------------------------------------I~ 573 (1005)
T KOG2274|consen 565 ---AASMESK--------------------------------------------------------------------IC 573 (1005)
T ss_pred ---hhhhhcc--------------------------------------------------------------------hh
Confidence 1112121 22
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHH---hhhhhhHhhHHHHHHHHHHhhhhhcCccc--HHHHHHHHHHHhcCCC
Q 002084 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQ---SSGQHFVTLLPQVLDCLSTNFVSFQNHEC--YIRTASVVIEEFGHKD 760 (969)
Q Consensus 686 ~~l~~il~~~~~~~~~v~e~~c~~l~~~~~---~~~~~~~p~l~~l~~~l~~~~~~~~~~~~--~L~l~~~li~~~g~~~ 760 (969)
|....+.. +|.+|+.|++.+-.+++..+. +.|+...-++|.+++.+...-.+.+..-| .+.+++.++.. +..
T Consensus 574 P~~i~lF~-k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~-tp~- 650 (1005)
T KOG2274|consen 574 PLTINLFL-KYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-TPS- 650 (1005)
T ss_pred HHHHHHHH-HhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-CCC-
Confidence 22233332 233333333333333333322 34555555667777766532211111112 35566666653 222
Q ss_pred Ccch-hHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHh
Q 002084 761 EYGP-LFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLA 815 (969)
Q Consensus 761 ~~~~-~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~ 815 (969)
...+ .+..+|..+..++ -..++.++.+..=+.+..++...+..+.+
T Consensus 651 pL~~~l~~~~FpaVak~t---------lHsdD~~tlQ~~~EcLra~Is~~~eq~~t 697 (1005)
T KOG2274|consen 651 PLPNLLICYAFPAVAKIT---------LHSDDHETLQNATECLRALISVTLEQLLT 697 (1005)
T ss_pred CccHHHHHHHhHHhHhhe---------eecCChHHHHhHHHHHHHHHhcCHHHHHh
Confidence 2223 3445666666654 23567788888888888888887776665
No 16
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.29 E-value=3.2e-10 Score=122.89 Aligned_cols=176 Identities=11% Similarity=0.141 Sum_probs=151.0
Q ss_pred HhhHHHHHHHHHHhhhhhc---CcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHH
Q 002084 722 VTLLPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAY 798 (969)
Q Consensus 722 ~p~l~~l~~~l~~~~~~~~---~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~ 798 (969)
..++|++++.++..|..+. +.+.+|++.+.+|...|+ ...+.+..+++.+..+| +.++.+ ++.++||+...|
T Consensus 66 ~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~--~~~~~v~~I~~~vf~~T-l~MI~~--d~~~yPe~r~~f 140 (319)
T PF08767_consen 66 NNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGE--LIQPQVPQILEAVFECT-LPMINK--DFEEYPEHRVNF 140 (319)
T ss_dssp HHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGG--GCCCCHHHHHHHHHHHH-HHHHSS--TSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHH-HHHHHh--hhhhChHHHHHH
Confidence 3667888898888898643 467789999999999998 34466777788887887 777764 788999999999
Q ss_pred HHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHH
Q 002084 799 TNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVI 878 (969)
Q Consensus 799 f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (969)
|.|+..+.++||..++..|+..+..++++.++|+++.++++...+++.+..+++..... ..+..++++
T Consensus 141 f~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~------------~~~~~~~F~ 208 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT------------NPEFANQFY 208 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-------------SHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc------------CHHHHHHHH
Confidence 99999999999999998877889999999999999999999999999999999886541 147789999
Q ss_pred HhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHH
Q 002084 879 SHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAA 914 (969)
Q Consensus 879 ~~~G~~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~ 914 (969)
++++..++..++..+++..++++++.++.+|+.|..
T Consensus 209 ~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 209 QQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999994
No 17
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.68 E-value=4.2e-08 Score=82.87 Aligned_cols=67 Identities=33% Similarity=0.375 Sum_probs=61.9
Q ss_pred HHHHHHHHhcC-hHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcC--------CCChHHHHHHHHHHHHHHH
Q 002084 28 ANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--------YLQSAAKDALLNALLVAAK 98 (969)
Q Consensus 28 A~~~L~~~Q~s-~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~--------~l~~~~~~~Lr~~Ll~~l~ 98 (969)
|+++|.+++++ |+.|..+..++.++. .+.++|+||+.+|+++|+++|+ .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~----~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNS----QDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 999999999996643 4689999999999999999999 9999999999999999875
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00064 Score=81.57 Aligned_cols=372 Identities=15% Similarity=0.164 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHHHhcCcH---HHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHh
Q 002084 414 VQFRMNLVELLVDICQLLRSA---TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL 490 (969)
Q Consensus 414 ~~fR~~~~d~l~~~~~ilg~~---~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l 490 (969)
..-|++++|++-.+.+-..++ ..++-+++.. .+.+-...|++++.+.++.+.+...... .++.+..++..-
T Consensus 94 ~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-----~S~~~~~rE~al~il~s~~~~~~~~~~~-~~~~l~~lf~q~ 167 (1075)
T KOG2171|consen 94 PSVRHKLADVIAEIARNDLPEKWPELLQFLFQST-----KSPNPSLRESALLILSSLPETFGNTLQP-HLDDLLRLFSQT 167 (1075)
T ss_pred hHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-----cCCCcchhHHHHHHHHhhhhhhccccch-hHHHHHHHHHHh
Confidence 467999999999998765554 4556566544 2345667899999999999999754442 234555555544
Q ss_pred ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh-------chHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcc
Q 002084 491 SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT-------NARPLLLFLAAGISEAV--SSNACASALRKICEDASAL 561 (969)
Q Consensus 491 ~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~-------~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~ 561 (969)
-..|... ||.++ .+.+|.|+.++..++. .||.+++.+-..+.+-+ .+..+=.+|-.|.+.+.+.
T Consensus 168 ~~d~s~~------vr~~a-~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 168 MTDPSSP------VRVAA-VRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred ccCCcch------HHHHH-HHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 3444321 56656 4999999999864442 45555555555554333 3455667777888888887
Q ss_pred cCCCccHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCC-----CCC
Q 002084 562 IDEPSNLEILMWIGEAL-EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNN-----HSL 635 (969)
Q Consensus 562 l~~~~~~~~l~~~~~~l-~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~-----~~~ 635 (969)
+.+ ++..++++.-.+ .+..+++..|...++-|...+..-|.- ......+..+++..+-..+..... +..
T Consensus 241 l~~--~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~---~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 241 LRP--HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAM---CKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred HHH--HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHH---hhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 753 666666555443 467889999999999999888875432 122223444555444444332111 100
Q ss_pred CCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 002084 636 IHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQ 715 (969)
Q Consensus 636 ~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~ 715 (969)
..+..+....=..+.+.++|++. +|++. .++-.+++.+.+.+++ .+..-..+....+..+..
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~---~L~g~------------~v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~E 377 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLAL---HLGGK------------QVLPPLFEALEAMLQS---TEWKERHAALLALSVIAE 377 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHh---cCChh------------hehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHc
Confidence 11111111111245678888873 33321 1122234555555532 222333455556666666
Q ss_pred hhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHH
Q 002084 716 SSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLV 795 (969)
Q Consensus 716 ~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~ 795 (969)
-++..+.+.+|.+++.+...+. +||+-+=|.++..+..+..+ +.|.+..-........-+..+.+ ..+|-+-
T Consensus 378 Gc~~~m~~~l~~Il~~Vl~~l~--DphprVr~AA~naigQ~std--l~p~iqk~~~e~l~~aL~~~ld~----~~~~rV~ 449 (1075)
T KOG2171|consen 378 GCSDVMIGNLPKILPIVLNGLN--DPHPRVRYAALNAIGQMSTD--LQPEIQKKHHERLPPALIALLDS----TQNVRVQ 449 (1075)
T ss_pred ccHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhh--hcHHHHHHHHHhccHHHHHHhcc----cCchHHH
Confidence 6677888899999998887664 48999989999998888773 44555443331111100111111 2334443
Q ss_pred HHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhh
Q 002084 796 EAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC 832 (969)
Q Consensus 796 ~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l 832 (969)
...-.=+-.+...||.-.+. ++++.+++.-+..+
T Consensus 450 ahAa~al~nf~E~~~~~~l~---pYLd~lm~~~l~~L 483 (1075)
T KOG2171|consen 450 AHAAAALVNFSEECDKSILE---PYLDGLMEKKLLLL 483 (1075)
T ss_pred HHHHHHHHHHHHhCcHHHHH---HHHHHHHHHHHHHH
Confidence 33333344455677776664 67888777544444
No 19
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.0041 Score=71.58 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=120.8
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcC-----CCChH
Q 002084 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-----YLQSA 84 (969)
Q Consensus 10 ~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~-----~l~~~ 84 (969)
.+.++.-. ++|+..++-|++.|.+..+.|.-...-..+..+. +.+.++|..|+.-+|+-|.+.|. .+|+|
T Consensus 3 vq~Lq~At-s~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~----t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~E 77 (978)
T KOG1993|consen 3 VQVLQQAT-SQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSK----TNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPE 77 (978)
T ss_pred HHHHHHhc-CCCcccchhHHHHHHhhccCCcHHHHHHHHHhcc----ccceeeeeehhhhHhcchhHHhhcCCcccCCHH
Confidence 34444433 6788899999999999999999888777776543 34689999999999999999887 68999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc-hhc-cCCchHHHHHHHhhcccCCCc--chHHHHHHHhhchhcc
Q 002084 85 AKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL-RAV-EHGKPIEKLFYSLQNLQSQDN--GNMAVLEMLTVLPEEV 160 (969)
Q Consensus 85 ~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l-~~~-~W~~~i~~li~~l~~~~~~~~--~~~~lL~~L~~l~EE~ 160 (969)
++..||..++.++. ..+..+..|.++.+|.+|- -+| .||+.+++++..+++..+..+ ...-+|..+..+..++
T Consensus 78 EK~~iR~~Ll~~~~---E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~L 154 (978)
T KOG1993|consen 78 EKDFIRCNLLLHSD---EENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKAL 154 (978)
T ss_pred HHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999998876 4567788888888888884 455 799999999999987432221 2223444444444444
Q ss_pred ccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHh
Q 002084 161 IDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQ 196 (969)
Q Consensus 161 ~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~ 196 (969)
.. +|-.+-++.+.+-++.|++++...
T Consensus 155 at----------~RL~a~rk~F~el~~~I~~~l~~~ 180 (978)
T KOG1993|consen 155 AT----------KRLLADRKAFYELAPEILTILAPI 180 (978)
T ss_pred HH----------hHHhhhhHHHHHHhHHHHHHHHHH
Confidence 32 122223344555666666655443
No 20
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.25 Score=61.61 Aligned_cols=173 Identities=12% Similarity=0.087 Sum_probs=102.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcH------HHHHHHHhhhhcC
Q 002084 374 HVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA------TFIQKVFFGSWGS 447 (969)
Q Consensus 374 ~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~------~~l~~l~~~~~~~ 447 (969)
+..+..+|++.+|+..++| -+|+|+ ..+.+-+.++|..+=++ .+++.+++.+..+
T Consensus 987 ~a~~kl~p~l~kLIPrLyR-Y~yDP~------------------~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLYR-YQYDPD------------------KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred HHHHhhhhHHHHhhHHHhh-hccCCc------------------HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 4567788999999888775 567665 35677888888765332 4666777665432
Q ss_pred CCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhcc----C-chhhhhhHHHHHHHHHHHHHHhhHHHH--
Q 002084 448 ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA----S-RSEELKGFMHIVYRSLADVIGSYSKWI-- 520 (969)
Q Consensus 448 ~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~----~-~~~~~~~~~~v~~~t~~~lig~ys~wl-- 520 (969)
..+..|+..||++.++.-+-.+=+.++- ...++++...+.. . ...|..+-. -.+++..++.+.++--
T Consensus 1048 -lt~kewRVReasclAL~dLl~g~~~~~~---~e~lpelw~~~fRvmDDIKEsVR~aa~~--~~~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1048 -LTSKEWRVREASCLALADLLQGRPFDQV---KEKLPELWEAAFRVMDDIKESVREAADK--AARALSKLCVRICDVTNG 1121 (1702)
T ss_pred -ccchhHHHHHHHHHHHHHHHcCCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcccCCc
Confidence 2456799999999999876444322111 1234443333321 1 111211100 1112223333333220
Q ss_pred HhChhchHHHHHHHH-Hhccc--CchhHHHHHHHHHHHHHhhcccCCCccHHHHHH
Q 002084 521 SAFQTNARPLLLFLA-AGISE--AVSSNACASALRKICEDASALIDEPSNLEILMW 573 (969)
Q Consensus 521 ~~~p~~L~~~l~~l~-~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~ 573 (969)
....+.+..+|+||+ .|+.. ++++..+-.++.++.+..++.+.+ |.+-|.-
T Consensus 1122 ~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP--~~~~LIp 1175 (1702)
T KOG0915|consen 1122 AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP--HFPKLIP 1175 (1702)
T ss_pred ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc--hhhHHHH
Confidence 112368888999998 34443 458899999999999999998863 5554443
No 21
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=97.21 E-value=0.84 Score=54.41 Aligned_cols=145 Identities=16% Similarity=0.088 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCC----
Q 002084 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (969)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~---- 80 (969)
..+.|+++-.+ .+++|..++.|++-|++..+.++ ++..|+.-..+ ...+.+.|.-|+.-+|+-|.++|.+
T Consensus 3 ~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~g---F~~kL~~I~~~-~~~~m~lR~~a~i~fkn~I~~~W~~~~~~ 76 (947)
T COG5657 3 DLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHG---FALKLLSINLS-AFNSMSLRWAALIQFKNYIDKHWREENGN 76 (947)
T ss_pred chHHHHHHHhh--cCCCCchHhhHHHHHHhhhcccc---HHHHHHHHHhc-cccchhHHHHHHHHHHhhHHHHhhhhccc
Confidence 55556555433 36788889999999999999887 44444432211 1356899999999999999999986
Q ss_pred -CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHch-hc-cCCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084 81 -LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (969)
Q Consensus 81 -l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~-~~-~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~ 157 (969)
+.+++...+|+.++..+.+. +....-|.+.|.+.+|-- +| .||..++|++..++.. +-..+...|..+..+-
T Consensus 77 ~i~p~e~v~IR~~l~~lii~s---~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~--D~~tn~~~L~~~h~If 151 (947)
T COG5657 77 SILPDENVLIRDELFSLIISS---SNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEK--DMVTNENSLRVLHHIF 151 (947)
T ss_pred CCCCccchHHHHHHHHHHHcc---cchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhccc--chHHHHHHHHHHHHHH
Confidence 45555669999999988753 223333777777777743 45 6999999999999872 2334455555555544
Q ss_pred hcc
Q 002084 158 EEV 160 (969)
Q Consensus 158 EE~ 160 (969)
.+.
T Consensus 152 k~~ 154 (947)
T COG5657 152 KRL 154 (947)
T ss_pred HHH
Confidence 444
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.1 Score=51.41 Aligned_cols=292 Identities=14% Similarity=0.101 Sum_probs=151.5
Q ss_pred chHHHHHHHHHhccc---CchhHHHHHHHHHHHHHhhcccCCCccHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002084 526 NARPLLLFLAAGISE---AVSSNACASALRKICEDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGS 601 (969)
Q Consensus 526 ~L~~~l~~l~~~l~~---~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (969)
||..+|.-|..++.. ..+ .---.|+..++++|+..|..|.++..|+. +++....-.-+.++.--++|.+++|.++
T Consensus 514 ~l~~IL~~l~~af~kYQ~KNL-lILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~A 592 (885)
T KOG2023|consen 514 YLEYILDQLVFAFGKYQKKNL-LILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASA 592 (885)
T ss_pred HHHHHHHHHHHHHHHHhhcce-ehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 677777777766653 332 22367899999999999876655554432 2222211122345566788888888887
Q ss_pred CCc-----hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCch
Q 002084 602 VSN-----KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDP 676 (969)
Q Consensus 602 lp~-----~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p 676 (969)
+.. .+-.....-+++.-. ++.......+. .-..|..- -.+-.|+-++.+..+++... +|
T Consensus 593 L~~gF~P~~~~Vy~Rc~~il~~t---~q~~~~~~~~~-~~~~pdkd-----fiI~sLDL~SGLaegLg~~i-------e~ 656 (885)
T KOG2023|consen 593 LGVGFLPYAQPVYQRCFRILQKT---LQLLAKVQQDP-TVEAPDKD-----FIIVSLDLLSGLAEGLGSHI-------EP 656 (885)
T ss_pred HhccccccCHHHHHHHHHHHHHH---HHHHHhccCCc-cccCCCcc-----eEEEeHHHHhHHHHHhhhch-------HH
Confidence 533 222222222232222 22222211111 00111100 01223444444455555321 23
Q ss_pred HHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCccc---HHHHHHHHH
Q 002084 677 IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHEC---YIRTASVVI 753 (969)
Q Consensus 677 ~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~---~L~l~~~li 753 (969)
.+ .-..+..++.+.+. ..-++|.+.+..+++.....+-.++.|.+..++..+...+... ..|. ..|.++-+.
T Consensus 657 Lv-a~snl~~lll~C~~---D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~-~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 657 LV-AQSNLLDLLLQCLQ---DEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE-NISVCNNAIWAIGEIA 731 (885)
T ss_pred Hh-hhccHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh-hchHHHHHHHHHHHHH
Confidence 32 12234444444443 1456888888888888888776677777766666665544322 2222 356666666
Q ss_pred HHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhh-
Q 002084 754 EEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC- 832 (969)
Q Consensus 754 ~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l- 832 (969)
.++|.. ..+.+..++..+... ++ .....-.+++..---++|+-..||..+-+ .++.+..=....+
T Consensus 732 ~k~g~~--~~~~v~~vl~~L~~i-----in---~~~~~~tllENtAITIGrLg~~~Pe~vAp----~l~~f~~pWc~sl~ 797 (885)
T KOG2023|consen 732 LKMGLK--MKQYVSPVLEDLITI-----IN---RQNTPKTLLENTAITIGRLGYICPEEVAP----HLDSFMRPWCTSLR 797 (885)
T ss_pred HHhchh--hhhHHHHHHHHHHHH-----hc---ccCchHHHHHhhhhhhhhhhccCHHhcch----hHHHHHHHHHHHhc
Confidence 777763 234444444433221 11 11233446666666677888889988764 3454433222223
Q ss_pred ccCchhHHHHHHHHHHHHHhh
Q 002084 833 TAMHRGAALAAMSYLSCFLEE 853 (969)
Q Consensus 833 ~~~e~~~~~a~~~Fl~~li~~ 853 (969)
...+.+...+|+.=+.++|+.
T Consensus 798 ~i~DneEK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 798 NIDDNEEKESAFRGLCNMINV 818 (885)
T ss_pred ccccchhHHHHHHHHHHheee
Confidence 355666667777666666654
No 23
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.74 E-value=0.17 Score=56.33 Aligned_cols=200 Identities=13% Similarity=0.161 Sum_probs=104.7
Q ss_pred HHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhh--HHHHHHHHH-HHHHHccCCCCCCCCC
Q 002084 328 ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF--FSVFSALLD-ALLLRAQVDESSFNDD 404 (969)
Q Consensus 328 ~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~l~~k~~~p~~~~~~~ 404 (969)
.+.++|......+.. +.++..++.|-..+.+. +.....| +|++.++++ +++..|.+-++++. .
T Consensus 141 ~vw~lL~~~~~~~~~-D~lv~~al~FL~~v~~~------------~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~E-l 206 (370)
T PF08506_consen 141 AVWNLLTKISQQPKY-DILVSKALQFLSSVAES------------PHHKNLFENKPHLQQIIEKVIFPNLCLREEDEE-L 206 (370)
T ss_dssp HHHHHHTC--SSGGG-HHHHHHHHHHHHHHHTS------------HHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHH-H
T ss_pred HHHHHHHHhhhcccc-cHHHHHHHHHHHHHHcc------------hhHHHHhCCHHHHHHHHHHhccCccCCCHHHHH-H
Confidence 456666676655542 34566788885544332 1122233 677777776 55667776433211 0
Q ss_pred CC---------CCCCchHHHHHHHHHHHHHHHHHhcCcH------HHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhh
Q 002084 405 GM---------VDLPDGLVQFRMNLVELLVDICQLLRSA------TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSE 469 (969)
Q Consensus 405 ~~---------~~e~d~f~~fR~~~~d~l~~~~~ilg~~------~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae 469 (969)
|+ +-|..|+..-|+...|+++.++.--+.. .+++.++....++ ++.+|...++++|++++++.
T Consensus 207 fEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~--~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 207 FEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN--PSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp HHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-HHHHHHHHHHHHHHHB
T ss_pred HccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC--CcccHHHHHHHHHHHHHHHh
Confidence 11 0123455666788889999888643332 1233344333332 35689999999999999975
Q ss_pred ccccC--C--cccchhHHHHHHH-----Hhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcc
Q 002084 470 VVLQE--G--QAFDFSVIMQLVA-----VLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS 539 (969)
Q Consensus 470 ~~~~~--~--~~~~l~~i~~ll~-----~l~-~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~ 539 (969)
..... + ....+-.+.+++. .|. +... .+.++..+ +..+..+..-+ .++.+..+++.+...|.
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~-----~piLka~a-ik~~~~Fr~~l--~~~~l~~~~~~l~~~L~ 356 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNS-----HPILKADA-IKFLYTFRNQL--PKEQLLQIFPLLVNHLQ 356 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S------HHHHHHH-HHHHHHHGGGS---HHHHHHHHHHHHHHTT
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhcccCCC-----CcchHHHH-HHHHHHHHhhC--CHHHHHHHHHHHHHHhC
Confidence 44210 0 0000112333332 222 1111 12355545 57777766543 36789999999999999
Q ss_pred cCc--hhHHHHHHH
Q 002084 540 EAV--SSNACASAL 551 (969)
Q Consensus 540 ~~~--~~~~Aa~al 551 (969)
++. |..-||.|+
T Consensus 357 ~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCcchhhhhhhhC
Confidence 876 556666654
No 24
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.72 E-value=1.5 Score=49.41 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=34.0
Q ss_pred hchHHHHHHHHHhcccCc--hhHHHHHHHHHH----HHHhhcccCCCccHHHHH
Q 002084 525 TNARPLLLFLAAGISEAV--SSNACASALRKI----CEDASALIDEPSNLEILM 572 (969)
Q Consensus 525 ~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~l----c~~c~~~l~~~~~~~~l~ 572 (969)
..+.|++.|+=+.++.++ -+.+|+.||-++ |++|+..++ |+.+|.+.
T Consensus 362 ~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~ 414 (858)
T COG5215 362 KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIE 414 (858)
T ss_pred HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHH
Confidence 467889999999999876 468889999887 566766554 34444443
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.30 E-value=3.8 Score=49.22 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC---hHH----HHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcC
Q 002084 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQT---DAA----WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (969)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s---~~a----W~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~ 77 (969)
+-..|.+++-.+..+.+++.++.|-++|.-+-+- ..- -.+|..++.. -.+-|+.++.+|+..|.+=
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~-------keq~rdissi~Lktvi~nl 116 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSG-------KEQLRDISSIGLKTVIANL 116 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccc-------hhhhccHHHHHHHHHHhcC
Confidence 3346777777777788899999999999854432 111 1344444433 2456666666666666531
Q ss_pred -----------------------------------------------cCCCChHHHHHHHHHHHHHHHHhcCCC-hHHHH
Q 002084 78 -----------------------------------------------GYYLQSAAKDALLNALLVAAKRFSSGP-PQLLT 109 (969)
Q Consensus 78 -----------------------------------------------~~~l~~~~~~~Lr~~Ll~~l~~~~~~~-~~v~~ 109 (969)
+..+=++.+..+...++-++. .+ ..||.
T Consensus 117 ~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~----s~R~aVrK 192 (1233)
T KOG1824|consen 117 PPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQ----SPRLAVRK 192 (1233)
T ss_pred CCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhccc----ChHHHHHH
Confidence 111111122222222222221 12 36888
Q ss_pred HHHHHHHHHHchhcc--CCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhh
Q 002084 110 QICLALSALILRAVE--HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187 (969)
Q Consensus 110 kL~~aLa~l~l~~~~--W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~ 187 (969)
|-|.+|+.++...+. ....++++...+++.. ++.........|..+.--.++ ++-..+...++
T Consensus 193 kai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~-q~~~~rt~Iq~l~~i~r~ag~--------------r~~~h~~~ivp 257 (1233)
T KOG1824|consen 193 KAITALGHLASSCNRDLYVELIEHLLKGLSNRT-QMSATRTYIQCLAAICRQAGH--------------RFGSHLDKIVP 257 (1233)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCC-chHHHHHHHHHHHHHHHHhcc--------------hhhcccchhhH
Confidence 999999999988762 5566777777776531 222223333333333332221 11112223455
Q ss_pred HHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhh-cccchHHHHHhhcC
Q 002084 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL-AAHPLLNFVFNSLQ 251 (969)
Q Consensus 188 ~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i-~~~~ll~~~~~~L~ 251 (969)
.|.++++.. +. ++.++++.+|+.+.+++.+.+ .+.. ....+++.+++.+.
T Consensus 258 ~v~~y~~~~-e~--------~dDELrE~~lQale~fl~rcp-----~ei~p~~pei~~l~l~yis 308 (1233)
T KOG1824|consen 258 LVADYCNKI-EE--------DDDELREYCLQALESFLRRCP-----KEILPHVPEIINLCLSYIS 308 (1233)
T ss_pred HHHHHhccc-cc--------CcHHHHHHHHHHHHHHHHhCh-----hhhcccchHHHHHHHHHhc
Confidence 555555433 21 356799999999999999753 3322 23446666666654
No 26
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.79 E-value=4.1 Score=46.51 Aligned_cols=242 Identities=14% Similarity=0.156 Sum_probs=129.8
Q ss_pred CccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHH
Q 002084 565 PSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQ 644 (969)
Q Consensus 565 ~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 644 (969)
|...+.+..+...+.... ..+.+.++++|-+++....+. ...+...+++-+...+..+..++ .+|.-.
T Consensus 22 p~~~~ll~~Lf~~i~~~~--s~ENeylMk~iMRvl~~~~e~--~~p~~~~il~~L~~il~~v~kNP------snP~Fn-- 89 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPG--SAENEYLMKCIMRVLSVLQED--ILPIAVEILQHLTAILKEVSKNP------SNPRFN-- 89 (435)
T ss_dssp CCHHHHHHHHHHHHHTT---STC-HHHHHHHHHHHHHSTTT--TGGGHHHHHHHHHHHHHHHHTS---------HHHH--
T ss_pred hhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhCC------CCcchh--
Confidence 333444555555543322 267889999999999887653 23445555555555555555443 234221
Q ss_pred HHHHHHHHHHhhhhhcccccccCCCCCCCCch--HHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh----
Q 002084 645 ILSSATRGLYRMGTVFSHLPVPLPTNPAGDDP--IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG---- 718 (969)
Q Consensus 645 ~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p--~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~---- 718 (969)
.-..+.++.++|..... +| ....-+.+||.+..++++ .-.+++.-+..++...+....
T Consensus 90 -----HylFEsi~~lir~~~~~--------~~~~v~~~E~~L~P~f~~ILq~---dV~EF~PYvfQIla~Lle~~~~~~~ 153 (435)
T PF03378_consen 90 -----HYLFESIGALIRFVCEA--------DPEAVSQFEEALFPPFQEILQQ---DVQEFIPYVFQILAQLLELRPSSPL 153 (435)
T ss_dssp -----HHHHHHHHHHHHHS-GG--------GHH---HHHHHHHHHHHHHHHT---T-TTTHHHHHHHHHHHHHHSS--S-
T ss_pred -----hhHHHHHHHHHHhccCC--------ChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 23466777777763321 22 223457899999999973 335677777777777766543
Q ss_pred -hhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHH
Q 002084 719 -QHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEA 797 (969)
Q Consensus 719 -~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~ 797 (969)
.....++|+++.- ..++.....+....+++..+..-+..-.-.+.+..+++.| +.+.+. +. .| ..
T Consensus 154 p~~y~~L~~~Ll~p--~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvF------QkLi~s---k~-~D--~~ 219 (435)
T PF03378_consen 154 PDAYKQLFPPLLSP--ALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVF------QKLIAS---KA-ND--HY 219 (435)
T ss_dssp -TTTGGGHHHHTSG--GGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHH------HHHHT----TT-CH--HH
T ss_pred cHHHHHHHHHHcCc--chhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHH------HHHHCC---CC-cc--hH
Confidence 2233444444322 1222222345566677777766554211112333333322 222221 11 22 55
Q ss_pred HHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhH-HHHHHHHHHHHH
Q 002084 798 YTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGA-ALAAMSYLSCFL 851 (969)
Q Consensus 798 ~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~-~~a~~~Fl~~li 851 (969)
.|+++..++.++|...+. +++..++...+.-|+...++. .+..+.|+.-++
T Consensus 220 gF~LL~~iv~~~p~~~l~---~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~ 271 (435)
T PF03378_consen 220 GFDLLESIVENLPPEALE---PYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFA 271 (435)
T ss_dssp HHHHHHHHHHHS-HHHHG---GGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHH
Confidence 889999999999997765 578888887776676433322 444455554443
No 27
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.62 E-value=5.9 Score=45.22 Aligned_cols=160 Identities=9% Similarity=0.092 Sum_probs=86.2
Q ss_pred HHHHHHhHHHHHHHHHHhhhccchHHH----HHHHHHHHHHHHhhhh---hhHhhHHHHHHHHHHhhhhhcCcccHHHHH
Q 002084 677 IFALLRVFWPMLEKLFRSEHMENGNLS----TAACRALSLAIQSSGQ---HFVTLLPQVLDCLSTNFVSFQNHECYIRTA 749 (969)
Q Consensus 677 ~~~~~~~i~~~l~~il~~~~~~~~~v~----e~~c~~l~~~~~~~~~---~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~ 749 (969)
...+++++..++..+.. -++++... |.++.++|.....-.. .+.+.+=|.+..+++.-.. ...|+...++
T Consensus 65 ~~~il~~L~~il~~v~k--NPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~-EF~PYvfQIl 141 (435)
T PF03378_consen 65 AVEILQHLTAILKEVSK--NPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ-EFIPYVFQIL 141 (435)
T ss_dssp HHHHHHHHHHHHHHHHT--S---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34567888888888774 45666665 5555555543221111 2344443334444432221 2567777899
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHH
Q 002084 750 SVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAA 829 (969)
Q Consensus 750 ~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l 829 (969)
+.+++...+. ...+....++..+.... .-+.++-+-...+|+..++++.|..+... +.++.++...-
T Consensus 142 a~Lle~~~~~-~~p~~y~~L~~~Ll~p~----------lWe~~gniPalvrLL~a~i~k~~~~i~~~--~~l~~iLgvFQ 208 (435)
T PF03378_consen 142 AQLLELRPSS-PLPDAYKQLFPPLLSPA----------LWERRGNIPALVRLLQAYIKKDPSFIVAN--NQLEPILGVFQ 208 (435)
T ss_dssp HHHHHHSS---S--TTTGGGHHHHTSGG----------GGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHHH
T ss_pred HHHHHcCCCC-CCcHHHHHHHHHHcCcc----------hhccCCCcCcHHHHHHHHHHhCchhhcch--hhHHHHHHHHH
Confidence 9999887622 22223334444332222 23446678899999999999999998654 56777766555
Q ss_pred HhhccCchhHHHHHHHHHHHHHhhh
Q 002084 830 ICCTAMHRGAALAAMSYLSCFLEEC 854 (969)
Q Consensus 830 ~~l~~~e~~~~~a~~~Fl~~li~~~ 854 (969)
..+..+-.+ ..++..+..++...
T Consensus 209 kLi~sk~~D--~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 209 KLIASKAND--HYGFDLLESIVENL 231 (435)
T ss_dssp HHHT-TTCH--HHHHHHHHHHHHHS
T ss_pred HHHCCCCcc--hHHHHHHHHHHHHC
Confidence 555544332 23566777777553
No 28
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.56 E-value=23 Score=43.10 Aligned_cols=579 Identities=14% Similarity=0.132 Sum_probs=252.3
Q ss_pred HhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhccCC
Q 002084 47 SILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHG 126 (969)
Q Consensus 47 ~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~~W~ 126 (969)
.|+..-. +.|-..||.|..=|-+.++++.-.|..|.-.-+-+-++..+. ..++-|.+--.-+++-++-+.. +
T Consensus 9 ~Llekmt---ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~---D~ngEVQnlAVKClg~lvsKvk--e 80 (1233)
T KOG1824|consen 9 NLLEKMT---SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE---DKNGEVQNLAVKCLGPLVSKVK--E 80 (1233)
T ss_pred HHHHHcc---CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHhhch--H
Confidence 4554433 346789999999999999999888887776666666776665 3445566555556666665543 2
Q ss_pred chHHHHHHHhhcc--cCCCcch-HHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCC
Q 002084 127 KPIEKLFYSLQNL--QSQDNGN-MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDG 203 (969)
Q Consensus 127 ~~i~~li~~l~~~--~~~~~~~-~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~ 203 (969)
+-+.+++..+.+. ++-.... ...+.+.+++.+ +.-+... .++... .+.+..-+.+.+....
T Consensus 81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~n-l~P~~~~--~la~tV-----------~~~~t~~l~~~i~~qe-- 144 (1233)
T KOG1824|consen 81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIAN-LPPSSSS--FLAATV-----------CKRITPKLKQAISKQE-- 144 (1233)
T ss_pred HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhc-CCCcccc--ccccHH-----------HHHHHHHHHHHhhhcc--
Confidence 3344444444321 0000011 112222222222 1100000 022211 1122222222222111
Q ss_pred CCCcchhhhHHHHHHHHHHHH-HccccccccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcCC-ChhHHHHh
Q 002084 204 GVPVQLHDRNRKILRCLLSWV-RAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHE-GLPQALLC 279 (969)
Q Consensus 204 ~~~~~~~~~~~~~l~cl~sWi-~~~~~~~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~~-~~~~~l~~ 279 (969)
+...++-.+++.+.-.+ ++|.. +| + ....++....-.|+.+ ..+..|+-++..+..... +....++.
T Consensus 145 ----~~sai~~e~lDil~d~lsr~g~l--l~-~--fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~ 215 (1233)
T KOG1824|consen 145 ----DVSAIKCEVLDILADVLSRFGTL--LP-N--FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIE 215 (1233)
T ss_pred ----cchhhHHHHHHHHHHHHHhhccc--Cc-c--hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 11235566666666544 44421 11 1 1122333333444443 234566666666555332 22222222
Q ss_pred hhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhcChhHHHHHHHHHhcccCC-CCCchhhhhhHHHHHHHH
Q 002084 280 RVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFP-SEDWEIADSTLQFWSTLA 358 (969)
Q Consensus 280 ~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~lL~~~~~p-~~d~~v~~~~~~FW~~l~ 358 (969)
.++. .+. ........+-+.+.+.+++...-..+-++ .-.++.++.+.++.- ..|++.-|-+++-...|.
T Consensus 216 ~Ll~---~L~----~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h---~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 216 HLLK---GLS----NRTQMSATRTYIQCLAAICRQAGHRFGSH---LDKIVPLVADYCNKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHHh---ccC----CCCchHHHHHHHHHHHHHHHHhcchhhcc---cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 2211 010 11123344445555555544332222222 224455555555221 114556665555444443
Q ss_pred HHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 002084 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQ 438 (969)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~ 438 (969)
.. ......|+...+++.++.++.|+|+-..|+.+ |+..+ +-.+..| +.. .
T Consensus 286 ~r--------------cp~ei~p~~pei~~l~l~yisYDPNy~yd~~e-Ded~~---~~ed~eD-----------de~-~ 335 (1233)
T KOG1824|consen 286 RR--------------CPKEILPHVPEIINLCLSYISYDPNYNYDTEE-DEDAM---FLEDEED-----------DEQ-D 335 (1233)
T ss_pred Hh--------------ChhhhcccchHHHHHHHHHhccCCCCCCCCcc-chhhh---hhhcccc-----------chh-c
Confidence 32 12345667778889999999998763222111 11111 1111110 000 0
Q ss_pred HHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHH-----HHHHhccCch-hhhhhHHHHHHHHHHHH
Q 002084 439 KVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-----LVAVLSASRS-EELKGFMHIVYRSLADV 512 (969)
Q Consensus 439 ~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~-----ll~~l~~~~~-~~~~~~~~v~~~t~~~l 512 (969)
. .. +.....+|--.-|+.=|+.++--.=. +. ++.+.+ ++..+-+... .+... +-.|..++.=
T Consensus 336 d---eY--sDDeD~SWkVRRaAaKcl~a~IsSR~--E~---L~~~~q~l~p~lI~RfkEREEnVk~dv--f~~yi~ll~q 403 (1233)
T KOG1824|consen 336 D---EY--SDDEDMSWKVRRAAAKCLEAVISSRL--EM---LPDFYQTLGPALISRFKEREENVKADV--FHAYIALLKQ 403 (1233)
T ss_pred c---cc--ccccchhHHHHHHHHHHHHHHHhccH--HH---HHHHHHHhCHHHHHHHHHHhhhHHHHH--HHHHHHHHHc
Confidence 0 00 01234557766666666655421110 00 122211 2222221110 00000 0001111111
Q ss_pred HHhhHHHHHh--------Ch---hchHHHHHHHHHhccc----Cch--hHHHHHHHHHHHHHhhcccCCCccHHHHH-HH
Q 002084 513 IGSYSKWISA--------FQ---TNARPLLLFLAAGISE----AVS--SNACASALRKICEDASALIDEPSNLEILM-WI 574 (969)
Q Consensus 513 ig~ys~wl~~--------~p---~~L~~~l~~l~~~l~~----~~~--~~~Aa~al~~lc~~c~~~l~~~~~~~~l~-~~ 574 (969)
++..-+|+.. -| .+|.....++++.++. ..+ ...+-.-++.+...-+.-+. ++++.+. .+
T Consensus 404 t~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~--~~~~slvpgI 481 (1233)
T KOG1824|consen 404 TRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA--QHIPSLVPGI 481 (1233)
T ss_pred CCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh--hcccccchhh
Confidence 1222222211 12 4666777777776663 112 22223334444444444332 1333332 22
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHhccCCc--hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHH
Q 002084 575 GEALEKRHLPLEDEEEVVGAISLILGSVSN--KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRG 652 (969)
Q Consensus 575 ~~~l~~~~l~~~~~~~l~eai~~ii~~lp~--~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 652 (969)
...+.. ....-...+++++.+.+++.. ++...+++..+..|+...+.. . -.+ .. ..++..
T Consensus 482 ~~~l~D---kSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d----~---fyK----is----aEAL~v 543 (1233)
T KOG1824|consen 482 IYSLND---KSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGD----P---FYK----IS----AEALLV 543 (1233)
T ss_pred hhhcCC---ccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcC----c---hHh----hh----HHHHHH
Confidence 222211 112223334455554444311 223556666666665544321 1 000 00 112333
Q ss_pred HHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHH
Q 002084 653 LYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCL 732 (969)
Q Consensus 653 l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l 732 (969)
...+..+++.+.++... ...| .+..++....+-+. .-..|-+|-|++..|++..+..+|......+|.++..+
T Consensus 544 ~~~lvkvirpl~~~~~~---d~~~---~v~~m~~~tl~rL~-a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il 616 (1233)
T KOG1824|consen 544 CQQLVKVIRPLQPPSSF---DASP---YVKTMYDCTLQRLK-ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPIL 616 (1233)
T ss_pred HHHHHHHhcccCCCccC---CCCh---hHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 44445566666643211 1122 33444554455454 35589999999999999999999988777788777766
Q ss_pred HHhhh
Q 002084 733 STNFV 737 (969)
Q Consensus 733 ~~~~~ 737 (969)
.....
T Consensus 617 ~eRl~ 621 (1233)
T KOG1824|consen 617 LERLG 621 (1233)
T ss_pred HHHHh
Confidence 65543
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=22 Score=40.69 Aligned_cols=275 Identities=13% Similarity=0.086 Sum_probs=137.9
Q ss_pred hchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh----------------------
Q 002084 525 TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK---------------------- 580 (969)
Q Consensus 525 ~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~---------------------- 580 (969)
.|+..++.-++.+++++. ++--||.++..+|+-|+..... ++-.+|.........
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~-~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV-YFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc-chHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccc
Confidence 389999999999999876 7899999999999999987643 232233322221110
Q ss_pred ------------------cCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhH
Q 002084 581 ------------------RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY 642 (969)
Q Consensus 581 ------------------~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~ 642 (969)
...++..|..+++=+- ++...|+-+ +-.|+..++.-+++-+ ... .++..
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~-~Lds~P~~~-m~~yl~~~ldGLf~~L----sD~-------s~eVr 225 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLY-VLDSVPDLE-MISYLPSLLDGLFNML----SDS-------SDEVR 225 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHhcCCcHH-HHhcchHHHHHHHHHh----cCC-------cHHHH
Confidence 1112333333333332 334444433 3444444443333322 110 11100
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhH
Q 002084 643 TQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFV 722 (969)
Q Consensus 643 ~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~ 722 (969)
..+=.+|+.++.++.+.... -+..+ +.+++-.-+ ...++++-+.+...+.-.+...|....
T Consensus 226 -------~~~~t~l~~fL~eI~s~P~s-~d~~~--------~i~vlv~~l---~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 226 -------TLTDTLLSEFLAEIRSSPSS-MDYDD--------MINVLVPHL---QSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred -------HHHHHHHHHHHHHHhcCccc-cCccc--------chhhccccc---cCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 00111233344443322110 01111 122222211 225666667777777777778888888
Q ss_pred hhHHHHHHHHHHhhhhhcCccc-HH----H-HHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHH
Q 002084 723 TLLPQVLDCLSTNFVSFQNHEC-YI----R-TASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVE 796 (969)
Q Consensus 723 p~l~~l~~~l~~~~~~~~~~~~-~L----~-l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~ 796 (969)
++++.++..+..+...++..+. .. . .+..++++....++ =.+..+++.+... + ..+.-|..-
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~--id~~~ii~vl~~~-----l-----~~~~~~tri 354 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE--IDYGSIIEVLTKY-----L-----SDDREETRI 354 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc--cchHHHHHHHHHH-----h-----hcchHHHHH
Confidence 8888888777765544322211 11 1 22222222222111 0112233322221 1 145577888
Q ss_pred HHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHH
Q 002084 797 AYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLS 848 (969)
Q Consensus 797 ~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~ 848 (969)
+.++.+..+..+.|..++.. ...+|...+..+.-..-+.+.-++..+.
T Consensus 355 ~~L~Wi~~l~~~~p~ql~~h----~~~if~tLL~tLsd~sd~vvl~~L~lla 402 (675)
T KOG0212|consen 355 AVLNWIILLYHKAPGQLLVH----NDSIFLTLLKTLSDRSDEVVLLALSLLA 402 (675)
T ss_pred HHHHHHHHHHhhCcchhhhh----ccHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 88889988889999887753 4445555555565554444444444333
No 30
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.79 E-value=25 Score=40.60 Aligned_cols=159 Identities=14% Similarity=0.210 Sum_probs=81.7
Q ss_pred HHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHH
Q 002084 530 LLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKEL 607 (969)
Q Consensus 530 ~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~ 607 (969)
+|..|+.+|...+ .+.-.+.|+.-.++.|...- -+|.++.-|++ -....+..+++++++.-+.....
T Consensus 766 vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfs----VlP~lm~dY~T-----Pe~nVQnGvLkam~fmFeyig~~-- 834 (975)
T COG5181 766 VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFS----VLPTLMSDYET-----PEANVQNGVLKAMCFMFEYIGQA-- 834 (975)
T ss_pred HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchh----hHHHHHhcccC-----chhHHHHhHHHHHHHHHHHHHHH--
Confidence 4555555555322 22233455566666666421 34555555532 12345778888888888776532
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHH
Q 002084 608 KNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPM 687 (969)
Q Consensus 608 ~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~ 687 (969)
..+|+..+ .|++++. +.. .++. +.+ .+. ++++++.-. +.+.+.++.+...++-+||-
T Consensus 835 s~dYvy~i-tPlleDA---ltD-------rD~v-hRq---ta~-------nvI~Hl~Ln-c~gtg~eda~IHLlNllwpN 891 (975)
T COG5181 835 SLDYVYSI-TPLLEDA---LTD-------RDPV-HRQ---TAM-------NVIRHLVLN-CPGTGDEDAAIHLLNLLWPN 891 (975)
T ss_pred HHHHHHHh-hHHHHhh---hcc-------cchH-HHH---HHH-------HHHHHHhcC-CCCcccHHHHHHHHHHhhhh
Confidence 35666444 4555431 211 1221 110 112 233333211 22334456677788888883
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHh
Q 002084 688 LEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTN 735 (969)
Q Consensus 688 l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~ 735 (969)
| +..++.++.++-.++...-+++|. ..+..++.++
T Consensus 892 I-------le~sPhvi~~~~Eg~e~~~~~lg~------g~~m~Yv~qG 926 (975)
T COG5181 892 I-------LEPSPHVIQSFDEGMESFATVLGS------GAMMKYVQQG 926 (975)
T ss_pred c-------cCCCcHHHHHHHHHHHHHHHHhcc------HHHHHHHHHh
Confidence 3 334667777777777666666663 2344666554
No 31
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.99 E-value=50 Score=40.16 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=85.8
Q ss_pred chHHHHHHhHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhhH-hhHHHHHHHHHHhhhhhcCcccHHHHHHH
Q 002084 675 DPIFALLRVFWPMLEKLFRSEHME--NGNLSTAACRALSLAIQSSGQHFV-TLLPQVLDCLSTNFVSFQNHECYIRTASV 751 (969)
Q Consensus 675 ~p~~~~~~~i~~~l~~il~~~~~~--~~~v~e~~c~~l~~~~~~~~~~~~-p~l~~l~~~l~~~~~~~~~~~~~L~l~~~ 751 (969)
+++.+....++..|.++.. ++.. -.-++|++|.+++.--...- .+. .+.|.++. -|.+....|.+..++.-
T Consensus 522 ~vl~~~~p~ild~L~qlas-~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~----lF~k~s~DP~V~~~~qd 595 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLAS-KSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTIN----LFLKYSEDPQVASLAQD 595 (1005)
T ss_pred eeccccchHHHHHHHHHcc-cccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHH----HHHHhcCCchHHHHHHH
Confidence 5555555556666666654 3321 22356777777653211110 111 12222222 23222233444444444
Q ss_pred HHHHhcCCC-CcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHH
Q 002084 752 VIEEFGHKD-EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAI 830 (969)
Q Consensus 752 li~~~g~~~-~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~ 830 (969)
++...-+.. .+.+....++..+.+ -++. ++-..++.+..-.+++++.++|+.|..+-+ ......|+-...
T Consensus 596 ~f~el~q~~~~~g~m~e~~iPslis-----il~~-~~~~~~~~l~~~aidvLttvvr~tp~pL~~---~l~~~~FpaVak 666 (1005)
T KOG2274|consen 596 LFEELLQIAANYGPMQERLIPSLIS-----VLQL-NADKAPAGLCAIAIDVLTTVLRNTPSPLPN---LLICYAFPAVAK 666 (1005)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHH-----HHcC-cccccCchhhHHHHHHHHHHHhcCCCCccH---HHHHHHhHHhHh
Confidence 443332211 122333334443333 2222 222455778888889999999998876443 244445543333
Q ss_pred hh-ccCchhHHHHHHHHHHHHHhhhhh
Q 002084 831 CC-TAMHRGAALAAMSYLSCFLEECLA 856 (969)
Q Consensus 831 ~l-~~~e~~~~~a~~~Fl~~li~~~~~ 856 (969)
+. -..+..+...+...+..+|+.+..
T Consensus 667 ~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 667 ITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred heeecCChHHHHhHHHHHHHHHhcCHH
Confidence 33 345777888999999999988654
No 32
>PRK09687 putative lyase; Provisional
Probab=89.81 E-value=31 Score=36.93 Aligned_cols=208 Identities=15% Similarity=0.096 Sum_probs=117.6
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHH
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~ 88 (969)
+...+..|. ++|...|..|...|.++. +++++..+..++.+++ +.+|.+|+..|.. +.. +......
T Consensus 25 ~~~L~~~L~-d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~d------~~vR~~A~~aLg~-lg~-----~~~~~~~ 90 (280)
T PRK09687 25 DDELFRLLD-DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSKN------PIERDIGADILSQ-LGM-----AKRCQDN 90 (280)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCCC------HHHHHHHHHHHHh-cCC-----CccchHH
Confidence 444555554 678889999999998775 6999999999987653 6999999999975 321 1100111
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhccC-CchHHHHHHHhhccc--------------CCCcchHHHHHHH
Q 002084 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEH-GKPIEKLFYSLQNLQ--------------SQDNGNMAVLEML 153 (969)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~~W-~~~i~~li~~l~~~~--------------~~~~~~~~lL~~L 153 (969)
.-..|...+. ....+.|+...+.+|..+......| +..+..+...+.... +++...+.++..|
T Consensus 91 a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L 168 (280)
T PRK09687 91 VFNILNNLAL--EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL 168 (280)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 1222222222 2345778888888888775443334 444444444332210 0112223333333
Q ss_pred hhchhccccccccccCCCHHHHHHHHHHHHh---hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccc
Q 002084 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (969)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~---~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~ 230 (969)
+. + ....|......|-. ..+.+...|...+.. .+..++..+...+..+ +
T Consensus 169 ~d---~-----------~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D--------~~~~VR~~A~~aLg~~---~--- 220 (280)
T PRK09687 169 KD---P-----------NGDVRNWAAFALNSNKYDNPDIREAFVAMLQD--------KNEEIRIEAIIGLALR---K--- 220 (280)
T ss_pred cC---C-----------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--------CChHHHHHHHHHHHcc---C---
Confidence 21 0 12344444444443 256667766666543 2345777776666531 1
Q ss_pred cccchhhcccchHHHHHhhcCCCCcHHHHHHHHHHHHh
Q 002084 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVG 268 (969)
Q Consensus 231 ~~~~~~i~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~ 268 (969)
....++.+++.|.++..+..+++.+-++-.
T Consensus 221 --------~~~av~~Li~~L~~~~~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --------DKRVLSVLIKELKKGTVGDLIIEAAGELGD 250 (280)
T ss_pred --------ChhHHHHHHHHHcCCchHHHHHHHHHhcCC
Confidence 224667777788887777677777665543
No 33
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.70 E-value=0.47 Score=31.58 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=24.2
Q ss_pred HHHHHHHhcccCc--hhHHHHHHHHHHHHHh
Q 002084 530 LLLFLAAGISEAV--SSNACASALRKICEDA 558 (969)
Q Consensus 530 ~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c 558 (969)
+++.+++.+.||. ++.+|+.++..|++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4678889999865 9999999999999876
No 34
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=87.27 E-value=26 Score=38.32 Aligned_cols=168 Identities=10% Similarity=0.191 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhc------CCCCcHH-HHHHHHHHHHhcCCC----hhHHHHh
Q 002084 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSL------QVQSSFD-VAIEVLVELVGRHEG----LPQALLC 279 (969)
Q Consensus 211 ~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L------~~~~~~~-~a~~~l~ei~~~~~~----~~~~l~~ 279 (969)
.+++.+|+-+..||.... +.+. ....+++.+++.+ ..|+.++ ....++..++.+..+ ....++.
T Consensus 42 ~iKkeIL~Li~t~i~~~~----~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~ 116 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE----DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-----HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC----CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 367889999999998542 1222 2333444444322 2345554 355677777765432 2233333
Q ss_pred hhhhhHHhhhhhhhc---cCchhHHhhHHHHHHHHhhhhhHHHHhcCh-hHHHHHHHHHhcccCCCCCchhhhhhHHHHH
Q 002084 280 RVPFLKELLLLPALT---DGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWS 355 (969)
Q Consensus 280 ~~~~l~~~~~~~~~~---~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~ 355 (969)
.+.. ..+ +.+. ++-+|...++-+++-++.+.+...+..-++ .+..+++.++....|+ +.+|++.+++.-.
T Consensus 117 ~vf~--~Tl--~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~ 190 (319)
T PF08767_consen 117 AVFE--CTL--PMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLNILL 190 (319)
T ss_dssp HHHH--HHH--HHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHH
T ss_pred HHHH--HHH--HHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHH
Confidence 3321 111 1222 233577889999999999988888877554 5567899999999998 6899999999888
Q ss_pred HHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHcc
Q 002084 356 TLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ 395 (969)
Q Consensus 356 ~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 395 (969)
.+.+.+...+. +...+-++.+|..++..++.-+.
T Consensus 191 ~ll~~~~~~~~------~~~~~F~~~y~~~il~~if~vlt 224 (319)
T PF08767_consen 191 ELLNNVSKTNP------EFANQFYQQYYLDILQDIFSVLT 224 (319)
T ss_dssp HHHHHHHH-SH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877654121 23445567777777766665553
No 35
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.59 E-value=15 Score=37.90 Aligned_cols=138 Identities=15% Similarity=0.112 Sum_probs=79.6
Q ss_pred CCCChhHhHHHHHHHHhhhhcc-ccCCcccchhHHHHHHH----Hhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC
Q 002084 450 VPIPWKEVETKLFALNVVSEVV-LQEGQAFDFSVIMQLVA----VLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAF 523 (969)
Q Consensus 450 ~~~~W~~~Ea~Lf~l~~iae~~-~~~~~~~~l~~i~~ll~----~l~-~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~ 523 (969)
.+.+|.....++=-+..+...- +.+. .+.++..+. .+. .....+. .|..++ |.+++.++.-+..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~----~~~~~~~l~~~~~~i~~~l~d~Rs----~v~~~A-~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF----PPDFVECLRQLLDAIIKQLSDLRS----KVSKTA-CQLLSDLARQLGSH 87 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B---------HHHHHHHH---HHHHH-S-HH-------HHHHH-HHHHHHHHHHHGGG
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc----HHHHHHHHHHhHHHHHHHHhhhHH----HHHHHH-HHHHHHHHHHHhHh
Confidence 4568999999998888875444 2211 133333333 222 1111111 134434 69999999888876
Q ss_pred h-hchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 002084 524 Q-TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (969)
Q Consensus 524 p-~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~ 600 (969)
- .++..+++.|+..+.++. ++.+|..++..+|+.|.. . +.. +....... ...-+...|....+.+..++.
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--~-~~~---~~~~l~~~-~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY--S-PKI---LLEILSQG-LKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH---HHHHHHHH-TT-S-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--H-HHH---HHHHHHHH-HhCCCHHHHHHHHHHHHHHHH
Confidence 4 367788888888888754 789999999999998871 0 111 12222211 123357789999999999999
Q ss_pred cCC
Q 002084 601 SVS 603 (969)
Q Consensus 601 ~lp 603 (969)
..+
T Consensus 161 ~~~ 163 (228)
T PF12348_consen 161 KWG 163 (228)
T ss_dssp T--
T ss_pred Hcc
Confidence 988
No 36
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=85.25 E-value=4.5 Score=35.42 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=34.7
Q ss_pred hhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhccc
Q 002084 524 QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALI 562 (969)
Q Consensus 524 p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l 562 (969)
.+|++.+++.++.++.+++ ++-.|+.|+..+++.++..+
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~ 62 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI 62 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999865 89999999999999998755
No 37
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.83 E-value=86 Score=36.59 Aligned_cols=214 Identities=10% Similarity=0.120 Sum_probs=117.7
Q ss_pred hhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhH
Q 002084 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKE 456 (969)
Q Consensus 377 ~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~ 456 (969)
..+.|++..++..++.+.. | -..+.++--.+....+++|...-|...++..++..+.. ..|+.
T Consensus 208 ~~~EPyiv~~lp~il~~~~----------d--~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~-----~kWrt 270 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFG----------D--KINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE-----AKWRT 270 (569)
T ss_pred CCCCchHHhhHHHHHHHhh----------c--cchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-----Hhhhh
Confidence 3455666666666666542 0 01111222223334455555544545566666655532 26999
Q ss_pred hHHHHHHHHhhhhccccCCcccchhHHHHHH-HHhcc-CchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHH
Q 002084 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLV-AVLSA-SRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFL 534 (969)
Q Consensus 457 ~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll-~~l~~-~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l 534 (969)
..+++..+++++++.+..-+ ..+|.+...+ ..+.+ +|. +|.+.. ..+-+|++.+ .||+ +.+.++.|
T Consensus 271 K~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~e--------vr~a~~-~~l~~~~svi-dN~d-I~~~ip~L 338 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPE--------VRKAGI-ETLLKFGSVI-DNPD-IQKIIPTL 338 (569)
T ss_pred HHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHH--------HHHHHH-HHHHHHHHhh-ccHH-HHHHHHHH
Confidence 99999999999998874211 1134443333 33332 332 455553 8888888865 4566 89999999
Q ss_pred HHhcccCc-hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHH
Q 002084 535 AAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGE-ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLL 612 (969)
Q Consensus 535 ~~~l~~~~-~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~-~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l 612 (969)
+.++.+|. -...+.+++.. .-=-+-+.++.++.+.-+.. .+. .-+...+...+.-++....-++++.....++
T Consensus 339 ld~l~dp~~~~~e~~~~L~~---ttFV~~V~~psLalmvpiL~R~l~--eRst~~kr~t~~IidNm~~LveDp~~lapfl 413 (569)
T KOG1242|consen 339 LDALADPSCYTPECLDSLGA---TTFVAEVDAPSLALMVPILKRGLA--ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL 413 (569)
T ss_pred HHHhcCcccchHHHHHhhcc---eeeeeeecchhHHHHHHHHHHHHh--hccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence 99999997 33443333321 11111122334555555543 222 2234445666667777777776666556656
Q ss_pred HHHHHHHHHHHHhhhc
Q 002084 613 ARLLSSSYEAIGKLID 628 (969)
Q Consensus 613 ~~ll~p~~~~l~~~~~ 628 (969)
..|+ ..++..+.
T Consensus 414 ~~Ll----p~lk~~~~ 425 (569)
T KOG1242|consen 414 PSLL----PGLKENLD 425 (569)
T ss_pred HHHh----hHHHHHhc
Confidence 5554 45555544
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=84.33 E-value=95 Score=36.69 Aligned_cols=360 Identities=12% Similarity=0.040 Sum_probs=172.0
Q ss_pred hHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHH-HHHHHHHhcccC--chhHHHHHHHHHHHHH
Q 002084 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP-LLLFLAAGISEA--VSSNACASALRKICED 557 (969)
Q Consensus 481 ~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~-~l~~l~~~l~~~--~~~~~Aa~al~~lc~~ 557 (969)
+.+...+..+..++.+ .||.+++ ..+.+. +...|+.++. .++.+.+.+.++ .+..+|..++..+ +
T Consensus 113 ~~l~~~v~~ll~~~~~------~VRk~A~-~~l~~i---~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~ 180 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSP------YVRKKAA-LALLKI---YRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--K 180 (526)
T ss_dssp HHHHHHHHHHHHSSSH------HHHHHHH-HHHHHH---HHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--H
T ss_pred hHHHHHHHHHhcCCch------HHHHHHH-HHHHHH---hccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--c
Confidence 4555555555556653 2676664 444443 4568888887 688888888865 4788888888877 3
Q ss_pred hhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 002084 558 ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIH 637 (969)
Q Consensus 558 c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~ 637 (969)
|...... ...+.+......+. ...++..+..+++.+..+...-+... .. ..+++++...++ ..
T Consensus 181 ~~~~~~~-~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~--~~--~~~i~~l~~~l~----s~------- 243 (526)
T PF01602_consen 181 CNDDSYK-SLIPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDA--DK--NRIIEPLLNLLQ----SS------- 243 (526)
T ss_dssp CTHHHHT-THHHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHH--HH--HHHHHHHHHHHH----HH-------
T ss_pred cCcchhh-hhHHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhh--hH--HHHHHHHHHHhh----cc-------
Confidence 3332211 13333333322211 34567777888877776654433222 11 234444444433 11
Q ss_pred CchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Q 002084 638 NPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717 (969)
Q Consensus 638 ~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~ 717 (969)
+++. ...++..+. .+... + ...+.+.+.+..++. ..+..+.-.+++.+.......
T Consensus 244 ~~~V-------~~e~~~~i~----~l~~~--------~---~~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 244 SPSV-------VYEAIRLII----KLSPS--------P---ELLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHH-------HHHHHHHHH----HHSSS--------H---HHHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHC
T ss_pred ccHH-------HHHHHHHHH----Hhhcc--------h---HHHHhhHHHHHHHhh---cccchhehhHHHHHHHhhccc
Confidence 1111 112222222 22210 1 156677777777774 255556666666666554443
Q ss_pred hhhhHhhHHHHHHHHHHhhhhhcCcccH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCc
Q 002084 718 GQHFVTLLPQVLDCLSTNFVSFQNHECY----IRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPD 793 (969)
Q Consensus 718 ~~~~~p~l~~l~~~l~~~~~~~~~~~~~----L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pD 793 (969)
.+.+. .....+..+. .. ..... +.++..++ +. ..+..++..+... +.. ..++|
T Consensus 299 ~~~v~-~~~~~~~~l~----~~-~d~~Ir~~~l~lL~~l~----~~----~n~~~Il~eL~~~-----l~~----~~d~~ 355 (526)
T PF01602_consen 299 PPAVF-NQSLILFFLL----YD-DDPSIRKKALDLLYKLA----NE----SNVKEILDELLKY-----LSE----LSDPD 355 (526)
T ss_dssp HHHHG-THHHHHHHHH----CS-SSHHHHHHHHHHHHHH------H----HHHHHHHHHHHHH-----HHH----C--HH
T ss_pred chhhh-hhhhhhheec----CC-CChhHHHHHHHHHhhcc----cc----cchhhHHHHHHHH-----HHh----ccchh
Confidence 22221 1111111111 11 12121 22333332 21 1233333333222 111 34677
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHH
Q 002084 794 LVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAM 873 (969)
Q Consensus 794 l~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~ 873 (969)
+..+...-+..+..++|.. .+..++..+.-+..........+...+..++..... .....
T Consensus 356 ~~~~~i~~I~~la~~~~~~--------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~------------~~~~~ 415 (526)
T PF01602_consen 356 FRRELIKAIGDLAEKFPPD--------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE------------LREKI 415 (526)
T ss_dssp HHHHHHHHHHHHHHHHGSS--------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT------------THHHH
T ss_pred hhhhHHHHHHHHHhccCch--------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh------------hhHHH
Confidence 8888888888888777432 233334444444444444444555555555543111 11123
Q ss_pred HHHHHH----hccHHHHHHHHHHhcCCCcccc-hhhHHHHHHHHHHHhhhhcccccccccChHHHHHHHHHHHhhhccc
Q 002084 874 AIQVIS----HSGEGLVSNVVYALLGVSAMSR-VHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLIL 947 (969)
Q Consensus 874 ~~~~~~----~~G~~Lv~~ll~~~~g~~~rS~-~~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~l~~~~~~ 947 (969)
+..++. ...+.+...++..+|.-..... .....++++.+...+ ...+...+.++-+++.++-..
T Consensus 416 l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~----------~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 416 LKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENF----------IEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHH----------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhh----------ccccHHHHHHHHHHHHHHHhh
Confidence 333332 2334555666666653322221 124666677776421 123457888888888776543
No 39
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.07 E-value=1.2e+02 Score=37.57 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCCCc--HHHHHHHHHHHHhcCC-C----------hhHHHH
Q 002084 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSS--FDVAIEVLVELVGRHE-G----------LPQALL 278 (969)
Q Consensus 212 ~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~~~--~~~a~~~l~ei~~~~~-~----------~~~~l~ 278 (969)
+|...-.|++.-|.. ..|. ...++++.+-..|++++. .-.+.-|+-++...++ + ..+.++
T Consensus 105 iRvql~~~l~~Ii~~----D~p~---~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~f 177 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKA----DYPE---QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELF 177 (1010)
T ss_pred HHHHHHHHHHHHHhc----CCcc---cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 555555666666653 2231 245677777788887764 3567778888877653 1 235566
Q ss_pred hhhhhhHHhhhhhhhccCc---hhHHhhHHHHHHHHhhhhhHHHHhcChhHHHHHHHHHhcccCCC
Q 002084 279 CRVPFLKELLLLPALTDGD---EKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPS 341 (969)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~d---~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~lL~~~~~p~ 341 (969)
|.+++....+. ..++ .+..+-++++|-++.-...+.-...++.+..-+++.+...+-|+
T Consensus 178 P~il~~~~~ll----~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 178 PDILQIFNGLL----SQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred HHHHHHHHhhc----cccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 77766443322 2223 23455667777665444443333334445555666666666665
No 40
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=83.49 E-value=43 Score=34.49 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHH-HHHHHHHHHhcCCCCcchhHHHHHHHHhhH
Q 002084 698 ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYI-RTASVVIEEFGHKDEYGPLFVTTFERFSQA 776 (969)
Q Consensus 698 ~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L-~l~~~li~~~g~~~~~~~~~~~l~~~l~~~ 776 (969)
..+.|+-.+|.+++..+..+|..+.|+++.++..+....... ..++ .-+...+..+-..-.+.+.+ ++..+...
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~---~~~i~~~a~~~L~~i~~~~~~~~~~--~~~~l~~~ 139 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDS---KKFIREAANNALDAIIESCSYSPKI--LLEILSQG 139 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHHHHHHHCCcHHHH--HHHHHHHH
Confidence 356789999999999999999999999888888777654421 1222 12222222222110000111 01111111
Q ss_pred HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhh--HHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002084 777 ASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR--KEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (969)
Q Consensus 777 ~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p--~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~ 853 (969)
.-.-+|.+......++..++.+.| ...+.. ...++.+......++.-..+++-.++-+-+..+...
T Consensus 140 ----------~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~-~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 140 ----------LKSKNPQVREECAEWLAIILEKWGSDSSVLQK-SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp ----------TT-S-HHHHHHHHHHHHHHHTT-----GGG---HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ----------HhCCCHHHHHHHHHHHHHHHHHccchHhhhcc-cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 114569999999999999999998 222221 123566777777777777777766666666555544
No 41
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=83.07 E-value=1.1e+02 Score=36.49 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 002084 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLR 432 (969)
Q Consensus 377 ~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg 432 (969)
...+|++.+++..++.++.-++. .-|...+|++-.+..++.
T Consensus 791 ~r~kpylpqi~stiL~rLnnksa---------------~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 791 GRVKPYLPQICSTILWRLNNKSA---------------KVRQQAADLISSLAKVLK 831 (1172)
T ss_pred hccccchHHHHHHHHHHhcCCCh---------------hHHHHHHHHHHHHHHHHH
Confidence 45688899999999888875543 457778888877766653
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=80.66 E-value=1.3e+02 Score=35.51 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=78.4
Q ss_pred ChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh----ch-
Q 002084 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----NA- 527 (969)
Q Consensus 453 ~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~----~L- 527 (969)
+-+.++.++.+|..+-+....++. .+.+...+.....||.+. ||.-+ ++.|+++.+ |++ .+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~------Vr~l~-l~~l~~~~~----~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPK------VRRLA-LKQLGRIAR----HSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHhc----CCHHHHHHhc
Confidence 456788888888877665543221 366667776666677633 55544 477877652 222 11
Q ss_pred -HHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhc--ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccC
Q 002084 528 -RPLLLFLAAGISEAV--SSNACASALRKICEDASA--LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (969)
Q Consensus 528 -~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~--~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~l 602 (969)
..++..+..++.+++ ++..|++++.+++..-.. .+..+.. ......+.. +-+...|.++++.++.+.+.-
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~----~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL----LSKLKSLMS-QSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch----HHHHHHHHh-ccCHHHHHHHHHHHHHHHhcC
Confidence 346778888888776 889999999999852110 1111111 222222221 224667999999988886543
No 43
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=79.64 E-value=34 Score=33.39 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=74.6
Q ss_pred CCCCcHHHHHHHHHHHHHHhh-hHHHHhccccchHHHHHHHHHhhccCch-hHHHHHHHHHHHHHhhhhhhccCCCCCCC
Q 002084 789 DQEPDLVEAYTNFASTFVRTS-RKEVLAASGALLEVSFQKAAICCTAMHR-GAALAAMSYLSCFLEECLASLLGYTTSIP 866 (969)
Q Consensus 789 ~~~pDl~~~~f~l~~~~l~~~-p~~ll~~~~~~l~~i~~~~l~~l~~~e~-~~~~a~~~Fl~~li~~~~~~~~~~~~~~~ 866 (969)
+.+|+-.-....++...++.| +..|......|+..++. -++.+++ ...++++.-++.++....+.
T Consensus 36 s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~----~L~~~~~~~~~~~ai~~L~~l~~~~~~~--------- 102 (165)
T PF08167_consen 36 SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLS----ILEKPDPPSVLEAAIITLTRLFDLIRGK--------- 102 (165)
T ss_pred CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHcCCCCHHHHHHHHHHHHHHHHHhcCC---------
Confidence 356888889999999999999 66665654566665554 4554444 45778888888888765431
Q ss_pred CccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHH
Q 002084 867 EGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLA 913 (969)
Q Consensus 867 ~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~ 913 (969)
.+..+++..++.+.++..++.-+.+ -+..+..-+.|..+.
T Consensus 103 ----p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 103 ----PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLL 142 (165)
T ss_pred ----CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHH
Confidence 2457788888889999998887763 344556666667776
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=78.53 E-value=1.5e+02 Score=35.06 Aligned_cols=426 Identities=16% Similarity=0.140 Sum_probs=202.5
Q ss_pred cCCChHHHHHHHHHHHHHhcC-hHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHHHHHHH
Q 002084 18 HDTESCNRVAANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (969)
Q Consensus 18 ~~~d~~~~~~A~~~L~~~Q~s-~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~~Ll~~ 96 (969)
.+.|...|+-+.-++..+-.. ++...++..-+..+= .+.++.+|-.|..++-+ |. +++....+-..+...
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl--~~~n~~~~~lAL~~l~~-i~------~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDL--NSPNPYIRGLALRTLSN-IR------TPEMAEPLIPDVIKL 122 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHH-H-------SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh--cCCCHHHHHHHHhhhhh-hc------ccchhhHHHHHHHHH
Confidence 356888899999988888776 443554444443321 13356778777777764 33 455566666666555
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHchhcc-CCc-hHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHH
Q 002084 97 AKRFSSGPPQLLTQICLALSALILRAVE-HGK-PIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAH 174 (969)
Q Consensus 97 l~~~~~~~~~v~~kL~~aLa~l~l~~~~-W~~-~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~ 174 (969)
+. ..++.||++-+.++..++...++ =+. +++.+...+... ++......+.++..+ .. .+..
T Consensus 123 l~---~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i--~~----------~~~~ 185 (526)
T PF01602_consen 123 LS---DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI--KC----------NDDS 185 (526)
T ss_dssp HH---SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH--HC----------THHH
T ss_pred hc---CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH--cc----------Ccch
Confidence 54 56689999999999999877652 122 567777776442 233334455555444 10 0000
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC-
Q 002084 175 RSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ- 253 (969)
Q Consensus 175 r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~- 253 (969)
. ....+.++..+.+.+.. .++-.+..+++++..+.+.. ........+++.+...+.+.
T Consensus 186 ~-------~~~~~~~~~~L~~~l~~--------~~~~~q~~il~~l~~~~~~~------~~~~~~~~~i~~l~~~l~s~~ 244 (526)
T PF01602_consen 186 Y-------KSLIPKLIRILCQLLSD--------PDPWLQIKILRLLRRYAPME------PEDADKNRIIEPLLNLLQSSS 244 (526)
T ss_dssp H-------TTHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHTTSTSSS------HHHHHHHHHHHHHHHHHHHHH
T ss_pred h-------hhhHHHHHHHhhhcccc--------cchHHHHHHHHHHHhcccCC------hhhhhHHHHHHHHHHHhhccc
Confidence 0 01122333333332221 22345667777776544321 11100034555555555421
Q ss_pred -CcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhcChhHHHHHHH
Q 002084 254 -SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADA 332 (969)
Q Consensus 254 -~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ 332 (969)
.+.-.|+.++..+.... .+.+.+++.+.. .+.+.|.+..--..+.+..++..+.+.+. ....
T Consensus 245 ~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~--------lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--------~~~~ 307 (526)
T PF01602_consen 245 PSVVYEAIRLIIKLSPSP-ELLQKAINPLIK--------LLSSSDPNVRYIALDSLSQLAQSNPPAVF--------NQSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHSSSH-HHHHHHHHHHHH--------HHTSSSHHHHHHHHHHHHHHCCHCHHHHG--------THHH
T ss_pred cHHHHHHHHHHHHhhcch-HHHHhhHHHHHH--------HhhcccchhehhHHHHHHHhhcccchhhh--------hhhh
Confidence 12222333333221111 111122222211 22334433222222334444444322221 1111
Q ss_pred HHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCch
Q 002084 333 LLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDG 412 (969)
Q Consensus 333 lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~ 412 (969)
.+.+..+ ..|..|...+++--+.+.+. .... .+++.+...+. +. .
T Consensus 308 ~~~~l~~-~~d~~Ir~~~l~lL~~l~~~----------------~n~~----~Il~eL~~~l~-~~---------~---- 352 (526)
T PF01602_consen 308 ILFFLLY-DDDPSIRKKALDLLYKLANE----------------SNVK----EILDELLKYLS-EL---------S---- 352 (526)
T ss_dssp HHHHHHC-SSSHHHHHHHHHHHHHH--H----------------HHHH----HHHHHHHHHHH-HC--------------
T ss_pred hhheecC-CCChhHHHHHHHHHhhcccc----------------cchh----hHHHHHHHHHH-hc---------c----
Confidence 1222222 11445656666655544432 1111 23333333331 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCc--HHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHh
Q 002084 413 LVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL 490 (969)
Q Consensus 413 f~~fR~~~~d~l~~~~~ilg~--~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l 490 (969)
-.+||..+...+..++....+ +.++..++..+.. ....-.+.+...+..+....++ .. -..+..++..+
T Consensus 353 d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~-----~~~~~~~~~~~~i~~ll~~~~~-~~---~~~l~~L~~~l 423 (526)
T PF01602_consen 353 DPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI-----SGDYVSNEIINVIRDLLSNNPE-LR---EKILKKLIELL 423 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC-----TGGGCHCHHHHHHHHHHHHSTT-TH---HHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh-----ccccccchHHHHHHHHhhcChh-hh---HHHHHHHHHHH
Confidence 034888887777777754332 3466555554432 1122344445555555444332 11 02233444445
Q ss_pred ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhh
Q 002084 491 SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDAS 559 (969)
Q Consensus 491 ~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~ 559 (969)
.+...+. ++. +++|++|+|++.+.. .+....++..+...+.. +.++...-.++.++.....
T Consensus 424 ~~~~~~~------~~~-~~~wilGEy~~~~~~-~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 424 EDISSPE------ALA-AAIWILGEYGELIEN-TESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp TSSSSHH------HHH-HHHHHHHHHCHHHTT-TTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhHHH------HHH-HHHhhhcccCCcccc-cccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 4433221 344 346999999998876 11445555555555543 4477788888888886654
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.24 E-value=1.4e+02 Score=34.61 Aligned_cols=140 Identities=20% Similarity=0.255 Sum_probs=83.4
Q ss_pred CchhHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 002084 541 AVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLS 617 (969)
Q Consensus 541 ~~~~~~Aa~al~~lc~~c~~---~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~ 617 (969)
|.++-.||.|+.+||..-.. ........+.|..+.. .-+...++.-+=|+|.|+..-|.-.. .-.-...+.
T Consensus 124 ~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~-----s~~~~v~eQavWALgNIagds~~~Rd-~vl~~g~l~ 197 (514)
T KOG0166|consen 124 PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS-----SPSADVREQAVWALGNIAGDSPDCRD-YVLSCGALD 197 (514)
T ss_pred hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc-----CCcHHHHHHHHHHHhccccCChHHHH-HHHhhcchH
Confidence 66899999999999964432 2222235677776664 22466788889999999887665332 111123455
Q ss_pred HHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhc
Q 002084 618 SSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM 697 (969)
Q Consensus 618 p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~ 697 (969)
|++..+.. . ++ ...+..+ .=.|+.+.|+-+ +.|-...+..++|+|..++ +.
T Consensus 198 pLl~~l~~----~-------~~---~~~lRn~---tW~LsNlcrgk~---------P~P~~~~v~~iLp~L~~ll---~~ 248 (514)
T KOG0166|consen 198 PLLRLLNK----S-------DK---LSMLRNA---TWTLSNLCRGKN---------PSPPFDVVAPILPALLRLL---HS 248 (514)
T ss_pred HHHHHhcc----c-------cc---hHHHHHH---HHHHHHHHcCCC---------CCCcHHHHHHHHHHHHHHH---hc
Confidence 55543321 1 11 0111112 222334445433 2344567888999999987 44
Q ss_pred cchHHHHHHHHHHHHHHH
Q 002084 698 ENGNLSTAACRALSLAIQ 715 (969)
Q Consensus 698 ~~~~v~e~~c~~l~~~~~ 715 (969)
.|.+|..-+|-.++....
T Consensus 249 ~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 249 TDEEVLTDACWALSYLTD 266 (514)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 899999888888876543
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.35 E-value=1.7e+02 Score=35.18 Aligned_cols=328 Identities=12% Similarity=0.127 Sum_probs=166.8
Q ss_pred CCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh----c
Q 002084 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----N 526 (969)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~----~ 526 (969)
..+|.---|+=-||.-+|+++..+ - ++.+..++..--..|.=+. |-..+ ...|+--+ ...|. .
T Consensus 337 ~DdWnp~kAAg~CL~l~A~~~~D~-I---v~~Vl~Fiee~i~~pdwr~------reaav-mAFGSIl~--gp~~~~Lt~i 403 (859)
T KOG1241|consen 337 DDDWNPAKAAGVCLMLFAQCVGDD-I---VPHVLPFIEENIQNPDWRN------REAAV-MAFGSILE--GPEPDKLTPI 403 (859)
T ss_pred cccCcHHHHHHHHHHHHHHHhccc-c---hhhhHHHHHHhcCCcchhh------hhHHH-HHHHhhhc--CCchhhhhHH
Confidence 346999999999999999998632 2 4777777774333332121 22122 22332221 12333 3
Q ss_pred hHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHH-hcCCChh---hHHHHHHHHHHHh
Q 002084 527 ARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIG-EALE-KRHLPLE---DEEEVVGAISLIL 599 (969)
Q Consensus 527 L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~-~~~l~~~---~~~~l~eai~~ii 599 (969)
....++.+...+.+|. +...++-+|.++|+.|.....+..++.....+. +.+. .+++... ....+.+++-...
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhc
Confidence 4556777777777877 578999999999999886443222344433333 3332 2333222 2233333333332
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHH
Q 002084 600 GSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFA 679 (969)
Q Consensus 600 ~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~ 679 (969)
..-+. .........+++..|-.......-+++..+.+ .-+.|+.+++... +-+.+
T Consensus 484 ~s~~q----t~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~A-----------AYeALmElIk~st----------~~vy~ 538 (859)
T KOG1241|consen 484 VSNGQ----TDPATPFYEAIIGSLLKVTDRADGNQSNLRSA-----------AYEALMELIKNST----------DDVYP 538 (859)
T ss_pred cCCCC----CCccchhHHHHHHHHHhhccccccchhhHHHH-----------HHHHHHHHHHcCc----------HHHHH
Confidence 22111 11111233334443333322211011111112 2334444444322 11333
Q ss_pred HHHhHHHHHHH---------HHHhhhc---cchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcC----cc
Q 002084 680 LLRVFWPMLEK---------LFRSEHM---ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN----HE 743 (969)
Q Consensus 680 ~~~~i~~~l~~---------il~~~~~---~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~----~~ 743 (969)
...++.+++.. ++. +. +-.++=.-+|.++..++|.+++.+.+....+++.+.+.|+.. + +-
T Consensus 539 ~v~~~~l~il~kl~q~i~~~~l~--~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~-~s~~v~e 615 (859)
T KOG1241|consen 539 MVQKLTLVILEKLDQTISSQILS--LADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESK-RSAVVHE 615 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCC-ccccchH
Confidence 33333333222 221 11 122344589999999999999988887788888888888751 2 22
Q ss_pred cHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHH
Q 002084 744 CYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEV 823 (969)
Q Consensus 744 ~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~ 823 (969)
..+.-.+.++...|.. |.+-+..|...- ...|. .+.+++ +.-...+|++++.+.--.-+.+ +.+.
T Consensus 616 ~a~laV~tl~~~Lg~~------F~kym~~f~pyL-~~gL~---n~~e~q-Vc~~aVglVgdl~raL~~~i~p----y~d~ 680 (859)
T KOG1241|consen 616 EAFLAVSTLAESLGKG------FAKYMPAFKPYL-LMGLS---NFQEYQ-VCAAAVGLVGDLARALEDDILP----YCDE 680 (859)
T ss_pred HHHHHHHHHHHHHhHh------HHHHHHHHHHHH-HHHhh---cchHHH-HHHHHHHHHHHHHHHHHhhhhh----HHHH
Confidence 2456677778877763 222222221211 11121 123333 6667777777777766555553 3444
Q ss_pred HHHHHHHhhcc
Q 002084 824 SFQKAAICCTA 834 (969)
Q Consensus 824 i~~~~l~~l~~ 834 (969)
++...+.+|+.
T Consensus 681 ~mt~Lvq~Lss 691 (859)
T KOG1241|consen 681 LMTVLVQCLSS 691 (859)
T ss_pred HHHHHHHHccC
Confidence 55555556653
No 47
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=76.73 E-value=1.4e+02 Score=34.95 Aligned_cols=227 Identities=10% Similarity=0.096 Sum_probs=118.6
Q ss_pred HHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCc--ccHHHHHHHHHHHhc
Q 002084 680 LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEFG 757 (969)
Q Consensus 680 ~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~--~~~L~l~~~li~~~g 757 (969)
-+.+|+....++++ +..++.++++...-+-+-+.-..-.. -+...+++.+.+.|... |. ...|.++.-+++ .|
T Consensus 189 EF~qIF~lc~qiLE--~~~~~SLi~ATLesllrfl~wiPl~y-IfeTnIieLv~~~f~s~-pd~r~~tl~CLtEi~~-L~ 263 (1053)
T COG5101 189 EFPQIFGLCKQILE--YSRDESLIEATLESLLRFLEWIPLDY-IFETNIIELVLEHFNSM-PDTRVATLSCLTEIVD-LG 263 (1053)
T ss_pred hHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHh-hc
Confidence 45677888888886 77899999987776655444332211 22345788888888754 32 223555555543 46
Q ss_pred CCCCcchhHHHHHHHHhhHHHHHHhhc------------CCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHH-
Q 002084 758 HKDEYGPLFVTTFERFSQAASVRALNS------------SYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVS- 824 (969)
Q Consensus 758 ~~~~~~~~~~~l~~~l~~~~~l~~l~~------------~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i- 824 (969)
+.+.........+..+.+++-+..+.+ .+.-.++.+-++++-.|++.+...+-+.+-.. ...+..
T Consensus 264 ~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~--e~~e~ll 341 (1053)
T COG5101 264 RHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAR--EMAENLL 341 (1053)
T ss_pred cCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcCh--hHHHHHH
Confidence 544333233222222222220111100 01113456677777778888777775554332 122222
Q ss_pred --HHHHHHhhccCchhHHHHHHHHHHHHHhhhhhh-----ccCCCC----CCCCc-----cHHHHHHHHHHhccHHHHHH
Q 002084 825 --FQKAAICCTAMHRGAALAAMSYLSCFLEECLAS-----LLGYTT----SIPEG-----SFNAMAIQVISHSGEGLVSN 888 (969)
Q Consensus 825 --~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~-----~~~~~~----~~~~~-----~~~~~~~~~~~~~G~~Lv~~ 888 (969)
....+.--..+|++..+.++.+|.+++-.-.+. .+++.. +.+.+ .....-..+=.+.+..++++
T Consensus 342 nah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsq 421 (1053)
T COG5101 342 NAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQ 421 (1053)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHH
Confidence 223333335789999999999999998543321 111111 00000 00011112223455667777
Q ss_pred HHHHhcCCCcccc-----hhhHHHHHHHHH
Q 002084 889 VVYALLGVSAMSR-----VHKCATILQQLA 913 (969)
Q Consensus 889 ll~~~~g~~~rS~-----~~~~~~iL~~l~ 913 (969)
+...+..+.+|.+ .+..+++.|..+
T Consensus 422 LrlvlienMvrPEEVliVendegEivRefv 451 (1053)
T COG5101 422 LRLVLIENMVRPEEVLIVENDEGEIVREFV 451 (1053)
T ss_pred HHHHHHHcCCCcceEEEEECCCcHHHHHHh
Confidence 7777777777653 234556665554
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=76.51 E-value=5.1 Score=30.64 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhHHHHH-hChhchHHHHHHHHHhcccCc--hhHHHHHHHHHH
Q 002084 504 IVYRSLADVIGSYSKWIS-AFQTNARPLLLFLAAGISEAV--SSNACASALRKI 554 (969)
Q Consensus 504 v~~~t~~~lig~ys~wl~-~~p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~l 554 (969)
+|..+ ++.+|+.+.-.. .-..+++.+++.|+..|.+++ |+..|+.|+.+|
T Consensus 3 vR~~A-~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAA-AWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHH-HHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHH-HHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56666 489997542111 112378889999999998654 899999988654
No 49
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.89 E-value=92 Score=36.24 Aligned_cols=168 Identities=10% Similarity=0.085 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccC
Q 002084 414 VQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSAS 493 (969)
Q Consensus 414 ~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~ 493 (969)
.+.|+...+++-.+...+|+...+..+++++..+ +-+..=..--+++-+||.+-. +..++.++... ..
T Consensus 744 KeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvq-----eRq~RvctsvaI~iVae~cgp------fsVlP~lm~dY-~T 811 (975)
T COG5181 744 KEIRRNATETFGCISRAIGPQDVLDILLNNLKVQ-----ERQQRVCTSVAISIVAEYCGP------FSVLPTLMSDY-ET 811 (975)
T ss_pred HHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHH-----HHHhhhhhhhhhhhhHhhcCc------hhhHHHHHhcc-cC
Confidence 3457777778888888999988888888776432 122222333455666776632 23333333322 12
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhHHHHHh-ChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCCccHHH
Q 002084 494 RSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEI 570 (969)
Q Consensus 494 ~~~~~~~~~~v~~~t~~~lig~ys~wl~~-~p~~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~ 570 (969)
|... | +..++....-+-+|+.+ .-+|...+.+.|-.+|.+ |.-+..|+.-++.|.-.|.... ..+.
T Consensus 812 Pe~n------V-QnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg----~eda 880 (975)
T COG5181 812 PEAN------V-QNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG----DEDA 880 (975)
T ss_pred chhH------H-HHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc----cHHH
Confidence 2211 1 11111222222223322 347888899999999986 4467889999999999998643 4444
Q ss_pred HHHHHHHHHh--cCCChhhHHHHHHHHHHHhccCCc
Q 002084 571 LMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSN 604 (969)
Q Consensus 571 l~~~~~~l~~--~~l~~~~~~~l~eai~~ii~~lp~ 604 (969)
+..+..-+-. ..-++.....+-||+-.+.+++.+
T Consensus 881 ~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 881 AIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4433322211 122355666777777777666654
No 50
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.87 E-value=1.8e+02 Score=34.74 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhc
Q 002084 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASA 560 (969)
Q Consensus 504 v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~ 560 (969)
+|..+++.+ -.-|-+-|+-|.++++-|.+-|.+|+ ++++|..-|-.|++...+
T Consensus 160 vRKkAIl~l----ykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 160 VRKKAILLL----YKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHHH----HHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 565554222 23345569999999999999999765 777776666666555544
No 51
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=75.54 E-value=1.5e+02 Score=33.77 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002084 792 PDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (969)
Q Consensus 792 pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~ 853 (969)
.+....|+.-+..++++.|..++. +.++.+++..+.++..++.+...++++-+..++.-
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~---~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLL---PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 447888999999999999998886 36888999999999999999999999988888743
No 52
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=75.17 E-value=66 Score=37.70 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=28.4
Q ss_pred HHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhh
Q 002084 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDAS 559 (969)
Q Consensus 511 ~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~ 559 (969)
.+|.+| |+.-|+.-..+++.++.-..+.+ ++..|.+.|-.+|.+-.
T Consensus 44 q~I~kf---fk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 44 QFIPKF---FKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp HHHHHH---HCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--
T ss_pred HHHHHH---HhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH
Confidence 666654 45557777888888887777654 66777777777776543
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=73.22 E-value=17 Score=31.80 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-ChhchHHHHHHHHH
Q 002084 458 ETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLAA 536 (969)
Q Consensus 458 Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~-~p~~L~~~l~~l~~ 536 (969)
-++|.+|.+++..+..+-. ..++.|++.+......+..+ |||.+ |+.+...++.... .-.++..+++.|++
T Consensus 4 ~ggli~Laa~ai~l~~~~~-~~l~~Il~pVL~~~~D~d~r------VRy~A-cEaL~ni~k~~~~~~l~~f~~IF~~L~k 75 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDIS-KYLDEILPPVLKCFDDQDSR------VRYYA-CEALYNISKVARGEILPYFNEIFDALCK 75 (97)
T ss_pred hHHHHHHHHHHHHchHhHH-HHHHHHHHHHHHHcCCCcHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888887765422 22455555444444444333 78877 5999988877653 22467888888888
Q ss_pred hcccCc--hhHHH
Q 002084 537 GISEAV--SSNAC 547 (969)
Q Consensus 537 ~l~~~~--~~~~A 547 (969)
.+.+++ |+..|
T Consensus 76 l~~D~d~~Vr~~a 88 (97)
T PF12755_consen 76 LSADPDENVRSAA 88 (97)
T ss_pred HHcCCchhHHHHH
Confidence 888765 55544
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=72.61 E-value=5.2 Score=36.13 Aligned_cols=93 Identities=15% Similarity=0.030 Sum_probs=55.0
Q ss_pred ChhHhHHHHHHHHhhhhccccCCcc----cchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchH
Q 002084 453 PWKEVETKLFALNVVSEVVLQEGQA----FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR 528 (969)
Q Consensus 453 ~W~~~Ea~Lf~l~~iae~~~~~~~~----~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~ 528 (969)
+|...+.++++++.++...++.... ..++.+.+++. .+..+ ++..+ ++++++.+......++.+.
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~------v~~~a-~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----SEDEE------VVKAA-LWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh----CCCHH------HHHHH-HHHHHHHccCcHHHHHHHH
Confidence 4999999999999998764311100 11233333332 22211 45545 4888888764433223222
Q ss_pred --HHHHHHHHhcccC--chhHHHHHHHHHHHH
Q 002084 529 --PLLLFLAAGISEA--VSSNACASALRKICE 556 (969)
Q Consensus 529 --~~l~~l~~~l~~~--~~~~~Aa~al~~lc~ 556 (969)
.+++.+.+.+.++ +++..|+.+|..||+
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 2577777777654 488899999998874
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=71.55 E-value=2.6e+02 Score=34.56 Aligned_cols=96 Identities=8% Similarity=0.115 Sum_probs=51.5
Q ss_pred CChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHH
Q 002084 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (969)
Q Consensus 452 ~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l 531 (969)
..|.++ ++|..++...+.++.. ...++..+.....|.. .+|+..++ .++-.+.... +|+....++
T Consensus 232 ~EW~Qi----~IL~lL~~y~P~~~~e--~~~il~~l~~~Lq~~N------~AVVl~Ai-k~il~l~~~~--~~~~~~~~~ 296 (746)
T PTZ00429 232 NEWGQL----YILELLAAQRPSDKES--AETLLTRVLPRMSHQN------PAVVMGAI-KVVANLASRC--SQELIERCT 296 (746)
T ss_pred ChHHHH----HHHHHHHhcCCCCcHH--HHHHHHHHHHHhcCCC------HHHHHHHH-HHHHHhcCcC--CHHHHHHHH
Confidence 468776 6677776666543321 1234443333333332 24677664 7777666543 344444443
Q ss_pred HHH----HHhc-ccCchhHHHHHHHHHHHHHhhccc
Q 002084 532 LFL----AAGI-SEAVSSNACASALRKICEDASALI 562 (969)
Q Consensus 532 ~~l----~~~l-~~~~~~~~Aa~al~~lc~~c~~~l 562 (969)
..+ +.-+ .+|+++-.+-+.+..|...+...+
T Consensus 297 ~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf 332 (746)
T PTZ00429 297 VRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLL 332 (746)
T ss_pred HHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHH
Confidence 222 1112 246788888888888887765443
No 56
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=67.86 E-value=7 Score=29.87 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=33.7
Q ss_pred hhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHh
Q 002084 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGS 515 (969)
Q Consensus 454 W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ 515 (969)
|...++++++|+.+++...+.... .++.++..|..+...+.. .||..+ ++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~------~VR~~A-~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDD------SVRAAA-AWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSH------HHHHHH-HHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCH------HHHHHH-HHHHhc
Confidence 778899999999987766543321 134555544444444442 267766 488875
No 57
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=67.48 E-value=1.4e+02 Score=32.09 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=59.2
Q ss_pred chHHHHHHHHHhcccCc-hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCC
Q 002084 526 NARPLLLFLAAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (969)
Q Consensus 526 ~L~~~l~~l~~~l~~~~-~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp 603 (969)
..-.+|.-|+.++.+|. ++-.--.++..+|.+|+.... ..+.|.++-.-+.+-+++.+++..++.++..++..-.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~---i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k 179 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEY---IVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNK 179 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeee---ecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence 44567888889998877 788888899999999997543 3445566666666788999999999999999987654
No 58
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=66.70 E-value=34 Score=28.77 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=44.0
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHH
Q 002084 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILK 71 (969)
Q Consensus 10 ~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~ 71 (969)
...++.|-+++++..|..|-..|.++. ++++-....+++.++ ++.+|..|+.+|.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~------~~~vr~~a~~aL~ 56 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLKDE------DPMVRRAAARALG 56 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHTSS------SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHcCC------CHHHHHHHHHHHH
Confidence 345556656889999999999999774 678888888888553 4799999999997
No 59
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.19 E-value=3.2e+02 Score=33.53 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=78.0
Q ss_pred chHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccC---CCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccC
Q 002084 526 NARPLLLFLAAGISEAVSSNACASALRKICEDASALID---EPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (969)
Q Consensus 526 ~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~---~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~l 602 (969)
.+-|+|-.|++.=+++++...||+|+..+|+-|..... .-..+|.|.+-...+. . .+..+..++++-.|-+.=
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie--y--iDvAEQ~LqALE~iSR~H 286 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE--Y--IDVAEQSLQALEKISRRH 286 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh--h--hHHHHHHHHHHHHHHhhc
Confidence 34445555555545678999999999999999876331 1113455544332211 1 122344455555444433
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHH
Q 002084 603 SNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLR 682 (969)
Q Consensus 603 p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~ 682 (969)
|.+-.....|...+.. +.-+. +..+ + ..|...+.+-+.+.+. .-| .+.
T Consensus 287 ~~AiL~AG~l~a~Lsy-lDFFS-i~aQ------R--------------~AlaiaaN~Cksi~sd------~f~----~v~ 334 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSY-LDFFS-IHAQ------R--------------VALAIAANCCKSIRSD------EFH----FVM 334 (1051)
T ss_pred cHHHHhcccHHHHHHH-HHHHH-HHHH------H--------------HHHHHHHHHHhcCCCc------cch----HHH
Confidence 3221111222111110 00000 0000 0 0111122233333321 223 345
Q ss_pred hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Q 002084 683 VFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717 (969)
Q Consensus 683 ~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~ 717 (969)
+.+|+|..+++ | .|...+|.+|.|+-+++..+
T Consensus 335 ealPlL~~lLs--~-~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 335 EALPLLTPLLS--Y-QDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHHHh--h-ccchhHHHHHHHHHHHHHhc
Confidence 67999999997 3 68899999999999998876
No 60
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.53 E-value=23 Score=34.51 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=60.0
Q ss_pred HHHhhccCCCCCCccchhHHhhhHHHHHHhhcC-cCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc
Q 002084 45 ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE-GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (969)
Q Consensus 45 ~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~-~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~ 123 (969)
...||++. +...|+.|+..++.-+... |+-+-..- ...-+.++..+.+ ..++.++.-.|.+|+.++-...
T Consensus 30 i~~LL~s~------~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 30 INSLLQSK------SAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHhCCC------ChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhc
Confidence 45677653 3688999999999999986 87664433 4445557777775 5667788888999999998888
Q ss_pred cCCchHHHHH
Q 002084 124 EHGKPIEKLF 133 (969)
Q Consensus 124 ~W~~~i~~li 133 (969)
+||+...++.
T Consensus 101 ~~p~l~Rei~ 110 (165)
T PF08167_consen 101 GKPTLTREIA 110 (165)
T ss_pred CCCchHHHHh
Confidence 8988866653
No 61
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=63.68 E-value=4.6e+02 Score=34.52 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=36.0
Q ss_pred chhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcC
Q 002084 208 QLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (969)
Q Consensus 208 ~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~ 270 (969)
+...++.+|+||+..-+.. ++..+.....-..+-+-+.|. ..+|+|+|.+-..+-.+
T Consensus 828 ~~ialRtkAlKclS~ive~------Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~ 886 (1692)
T KOG1020|consen 828 NAIALRTKALKCLSMIVEA------DPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI 886 (1692)
T ss_pred chHHHHHHHHHHHHHHHhc------ChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc
Confidence 3467999999999998874 443333333334444444443 56789998887644433
No 62
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=56.05 E-value=1e+02 Score=27.57 Aligned_cols=90 Identities=9% Similarity=0.089 Sum_probs=60.8
Q ss_pred HHHHHHHHHhccc---C---chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002084 528 RPLLLFLAAGISE---A---VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (969)
Q Consensus 528 ~~~l~~l~~~l~~---~---~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (969)
-.+++++-..+++ . .-+..|-+++..+.+-|++.+.. ..|.+..+.+..... ++-+..-+++-...+..
T Consensus 10 Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~--~~pQI~a~L~sal~~---~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 10 LGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISS--ARPQIMACLQSALEI---PELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHH
Confidence 3444555555544 1 15788899999999999988754 778888777653221 25567778999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 002084 602 VSNKELKNNLLARLLSSSYEAI 623 (969)
Q Consensus 602 lp~~~~~~~~l~~ll~p~~~~l 623 (969)
+++++ ....+.++...++..|
T Consensus 85 L~~~~-l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 85 LDEED-LGPLLDQIFAILLPLW 105 (107)
T ss_pred CCHHH-HHHHHHHHHHHHHHhc
Confidence 99866 5666666655554433
No 63
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=53.88 E-value=28 Score=29.38 Aligned_cols=57 Identities=26% Similarity=0.170 Sum_probs=43.9
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHH
Q 002084 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQIL 70 (969)
Q Consensus 8 ~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL 70 (969)
++...+..+..++|+..|.+|-..|.++. +++++.....++.+++ +..+|.-|+..|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~-----~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDD-----DEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-S-----SHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCC-----cHHHHHHHHhhc
Confidence 44555555557889999999999999996 6999999999998754 356788777765
No 64
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.63 E-value=4.2e+02 Score=30.89 Aligned_cols=216 Identities=12% Similarity=0.014 Sum_probs=121.1
Q ss_pred HHhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHhhhhhhHhhHH--HHHHHHHHhhhhhcCcccHHHHHHHHHHHhc
Q 002084 681 LRVFWPMLEKLFRSEHMEN-GNLSTAACRALSLAIQSSGQHFVTLLP--QVLDCLSTNFVSFQNHECYIRTASVVIEEFG 757 (969)
Q Consensus 681 ~~~i~~~l~~il~~~~~~~-~~v~e~~c~~l~~~~~~~~~~~~p~l~--~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g 757 (969)
...++..+...++ +...+ +...+++.+++..=.+.-.....-++. +++..+........-|-....+.+.+...+.
T Consensus 151 ~~~~L~~l~~lLe-~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~ 229 (559)
T KOG2081|consen 151 VSKVLVFLSDLLE-RSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSL 229 (559)
T ss_pred HHHHHHHHHHHHh-hcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhh
Confidence 3455566666666 45544 666677777776665522111111110 1222222221111123334556666666665
Q ss_pred CCCCcchhHHHHHHH--HhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccC
Q 002084 758 HKDEYGPLFVTTFER--FSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAM 835 (969)
Q Consensus 758 ~~~~~~~~~~~l~~~--l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~ 835 (969)
+.++..+.-..++.. +.... +. .....+++|...++-+++..+.+.+-..+...+. .+-.+++..+..-.++
T Consensus 230 ~~~~~~~~~~~l~~~v~~L~~~-~~----~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~-~~l~~vellLl~~~h~ 303 (559)
T KOG2081|consen 230 DRSEGLPLAAILFIGVIILETA-FH----LAMAGEDLDKNEAICRIFTELGEAFVVLISTNPE-EFLRIVELLLLVAGHN 303 (559)
T ss_pred hhhccCchhHHHhccccccchH-HH----HhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCC-cchhHHHHHHHhccCC
Confidence 544432211111111 11110 11 1123678999999999999988888777666653 4444666666677888
Q ss_pred chhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccch-----------hh
Q 002084 836 HRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRV-----------HK 904 (969)
Q Consensus 836 e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~-----------~~ 904 (969)
+.+.+.+++.||..+-..-... . ......++.+|...+|+.+..-+.-..-+-.+ .+
T Consensus 304 ~~evie~SF~fW~~lse~l~~~----~--------~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~ 371 (559)
T KOG2081|consen 304 DTEVIEASFNFWYSLSEELTLT----D--------DDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLK 371 (559)
T ss_pred chhhhhhhHHhhhhhHHHHhcc----c--------cHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHH
Confidence 9999999999999887554321 1 13455678888999999998887522101111 15
Q ss_pred HHHHHHHHHHH
Q 002084 905 CATILQQLAAI 915 (969)
Q Consensus 905 ~~~iL~~l~~~ 915 (969)
.+|++++++.+
T Consensus 372 v~dvl~Dv~~i 382 (559)
T KOG2081|consen 372 VGDVLKDVAFI 382 (559)
T ss_pred HHHHHHHHHHH
Confidence 67888888754
No 65
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.40 E-value=5.8e+02 Score=31.53 Aligned_cols=177 Identities=13% Similarity=0.098 Sum_probs=102.1
Q ss_pred HHHHhhHHHHHhC--h--hchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCC
Q 002084 511 DVIGSYSKWISAF--Q--TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLP 584 (969)
Q Consensus 511 ~lig~ys~wl~~~--p--~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~ 584 (969)
+-+...++|+++. . .+...++......+.+.+ +-..|.+++..+|+--.+ ..+|.+.+.|.+- +....
T Consensus 746 ~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~il~dL~e~Y~s~-k~k~~ 819 (982)
T KOG4653|consen 746 YGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----DILPDLSEEYLSE-KKKLQ 819 (982)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----hhHHHHHHHHHhc-ccCCC
Confidence 3445556788742 2 255678888889998754 678888889999986332 2567777777653 23344
Q ss_pred hhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCc-hhHHHHHHHHHHHHHhhhhhcccc
Q 002084 585 LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNP-ATYTQILSSATRGLYRMGTVFSHL 663 (969)
Q Consensus 585 ~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~-~~~~~~L~~~~~~l~~L~~i~~~l 663 (969)
.+.+.++=|+|+.++++..+- ...|...++.-.+ ..+. +| ..+.. +++..+..|..+.+..
T Consensus 820 ~d~~lkVGEai~k~~qa~Gel--~~~y~~~Li~tfl----~gvr---------epd~~~Ra---SS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 820 TDYRLKVGEAILKVAQALGEL--VFKYKAVLINTFL----SGVR---------EPDHEFRA---SSLANLGQLCQLLAFQ 881 (982)
T ss_pred ccceehHHHHHHHHHHHhccH--HHHHHHHHHHHHH----HhcC---------CchHHHHH---hHHHHHHHHHHHHhhh
Confidence 788999999999999998752 3444544443333 2222 11 11110 1222222222222211
Q ss_pred cccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHH
Q 002084 664 PVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLP 726 (969)
Q Consensus 664 ~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~ 726 (969)
. .+ .+-++...+..+.. -.+..-+..++..+++..++..|..+.|++.
T Consensus 882 v---------sd----~~~ev~~~Il~l~~--~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 882 V---------SD----FFHEVLQLILSLET--TDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred h---------hH----HHHHHHHHHHHHHc--cCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 1 01 22233333333332 3345556678888899989888887777653
No 66
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=50.16 E-value=4.3e+02 Score=30.14 Aligned_cols=172 Identities=17% Similarity=0.194 Sum_probs=90.0
Q ss_pred HHHHhhHHHHHhChhchHHHHHHHHHhcccCc---hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhh
Q 002084 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLED 587 (969)
Q Consensus 511 ~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~~---~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~ 587 (969)
.+-|+++-|- ++...+|..++.-+.+.+ ....|-+-++++|+.=...|.. ..=+.+...+....-+.+.
T Consensus 315 ~~e~sfsvWe----q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D----stE~ai~K~Leaa~ds~~~ 386 (516)
T KOG2956|consen 315 LCEGSFSVWE----QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD----STEIAICKVLEAAKDSQDE 386 (516)
T ss_pred HHccchhHHH----HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc----hHHHHHHHHHHHHhCCchh
Confidence 4556666673 567778888888888733 3444444455555443333322 1222233332222222222
Q ss_pred H-HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhccccccc
Q 002084 588 E-EEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVP 666 (969)
Q Consensus 588 ~-~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~ 666 (969)
- ..-.|....+++...+..++. .+.|++. .+ .+| .++.+|.++..+|..+..
T Consensus 387 v~~~Aeed~~~~las~~P~~~I~-----~i~~~Il-------t~------D~~--------~~~~~iKm~Tkl~e~l~~- 439 (516)
T KOG2956|consen 387 VMRVAEEDCLTTLASHLPLQCIV-----NISPLIL-------TA------DEP--------RAVAVIKMLTKLFERLSA- 439 (516)
T ss_pred HHHHHHHHHHHHHHhhCchhHHH-----HHhhHHh-------cC------cch--------HHHHHHHHHHHHHhhcCH-
Confidence 2 222234344444333223221 2222221 11 111 234567788888887663
Q ss_pred CCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh-hhhHhhHHHH
Q 002084 667 LPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFVTLLPQV 728 (969)
Q Consensus 667 ~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~-~~~~p~l~~l 728 (969)
+-...++..+.|.+-+...+ .++.|...+..|+-.++..+| ..|.|.|.++
T Consensus 440 --------EeL~~ll~diaP~~iqay~S---~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 440 --------EELLNLLPDIAPCVIQAYDS---TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred --------HHHHHhhhhhhhHHHHHhcC---chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 22445666777776665431 456677777788999999998 6788877654
No 67
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=46.56 E-value=4.2e+02 Score=29.15 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=76.9
Q ss_pred CCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhh----c----cCc---------hhHHHHHHHHHHHHHh
Q 002084 790 QEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC----T----AMH---------RGAALAAMSYLSCFLE 852 (969)
Q Consensus 790 ~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l----~----~~e---------~~~~~a~~~Fl~~li~ 852 (969)
..+.++...++|+..++....+.+... .+. -|++...++ . ..+ +.+-.+..+||..|+.
T Consensus 68 ~~~~~~~~~LrLL~~iv~f~~g~~a~~---v~~-~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~ 143 (330)
T PF11707_consen 68 SKPSLTNPALRLLTAIVSFDGGALARE---VLR-SFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLS 143 (330)
T ss_pred CcHHHHHHHHHHHHHHHccCCHHHHHH---HHH-hcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHc
Confidence 337788899999999998544332221 111 111111111 1 111 1556678899999997
Q ss_pred hhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhccccc--------
Q 002084 853 ECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSG-------- 924 (969)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~~~~~~~~~~~-------- 924 (969)
... ....++++.+.+. +..+++++.. -|.+.+..+-+.|+.-+ ...+.+.-
T Consensus 144 ~~~---------------~~~~~~lL~~~~~--~~~l~k~l~~-D~~~~v~~iL~~l~~~V---l~~~~v~r~~K~~~fn 202 (330)
T PF11707_consen 144 SGD---------------PELKRDLLSQKKL--MSALFKGLRK-DPPETVILILETLKDKV---LKDSSVSRSTKCKLFN 202 (330)
T ss_pred cCC---------------HHHHHHHHHcCch--HHHHHhcccC-CCHHHHHHHHHHHHHHh---ccCCCCChhhhhhhcC
Confidence 632 2456667766555 7888888775 44333333333333222 11111110
Q ss_pred ----------ccccCh---HHHHHHHHHHHhhhccccccceeee
Q 002084 925 ----------KAILSW---ESLQGWLHSAVSLFLILIGFGLQLQ 955 (969)
Q Consensus 925 ----------~~~~~~---~~~~~Wl~~~l~~~~~~~~~~~~~~ 955 (969)
+....+ .......++.|-.+|...+.|++-.
T Consensus 203 ~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~ 246 (330)
T PF11707_consen 203 EWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFP 246 (330)
T ss_pred HHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccC
Confidence 000001 1457778888889999999998764
No 68
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.52 E-value=4.3e+02 Score=28.96 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=80.8
Q ss_pred CCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchH-
Q 002084 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR- 528 (969)
Q Consensus 450 ~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~- 528 (969)
.+.+-++.|.++.-|....+.++.-.+-..+.-+..++. ..+++... +|..+ +++||... .+||..-.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~------lR~~A-a~Vigt~~---qNNP~~Qe~ 161 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAE------LRELA-ARVIGTAV---QNNPKSQEQ 161 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHH------HHHHH-HHHHHHHH---hcCHHHHHH
Confidence 457899999999999999888863221111122333444 33444322 57666 49999865 67885322
Q ss_pred ----HHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCC-cc--HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002084 529 ----PLLLFLAAGISEAVSSNACASALRKICEDASALIDEP-SN--LEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (969)
Q Consensus 529 ----~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~-~~--~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (969)
..+..|+..+....--.+-.+|+..||.--|....+. .+ ++.+.-+...+.....+...+.+++.=++.+++.
T Consensus 162 v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 162 VIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 2455566666532211122445555555445433110 01 1122222333334446677788888899999988
Q ss_pred CCchH
Q 002084 602 VSNKE 606 (969)
Q Consensus 602 lp~~~ 606 (969)
.+.++
T Consensus 242 ~~s~~ 246 (342)
T KOG2160|consen 242 DKSDE 246 (342)
T ss_pred hhhhh
Confidence 77654
No 69
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=44.28 E-value=2.2e+02 Score=25.46 Aligned_cols=90 Identities=9% Similarity=0.077 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcccCc------hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 002084 527 ARPLLLFLAAGISEAV------SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (969)
Q Consensus 527 L~~~l~~l~~~l~~~~------~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~ 600 (969)
+-.+++.+-..++++. -+..|-+|+..+.+-|++++.. ..|.+..+.+.-.. .++-+..-+++-...+.
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~--a~pQI~acL~saL~---~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISS--ALPQIMACLQSALE---IPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhC---chhHHHHHHHHHHHHHH
Confidence 4455666666666543 3788899999999999987754 77887777754211 23457777889999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHH
Q 002084 601 SVSNKELKNNLLARLLSSSYEA 622 (969)
Q Consensus 601 ~lp~~~~~~~~l~~ll~p~~~~ 622 (969)
.+++++ ....+++.+.-++..
T Consensus 84 ~L~~~~-l~~ll~~~~~~i~~~ 104 (107)
T smart00802 84 TLKEEE-LGPLLDQIFAAILPL 104 (107)
T ss_pred hCCHHH-HHHHHHHHHHHHHHh
Confidence 999765 566666655544443
No 70
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.52 E-value=7.7e+02 Score=29.86 Aligned_cols=216 Identities=17% Similarity=0.159 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc-cCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccc
Q 002084 83 SAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVI 161 (969)
Q Consensus 83 ~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~-~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~ 161 (969)
++-..-|-+-++..+. ..-++||.|-...|=-++++++ .-...++.+.+.+-.. ++....+. ..+++|=..
T Consensus 139 pdLARDLa~Dv~tLL~---sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp--Dp~V~SAA---V~VICELAr 210 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLN---SSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP--DPSVVSAA---VSVICELAR 210 (877)
T ss_pred chhhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC--CchHHHHH---HHHHHHHHh
Confidence 4445556666666554 3447899998888888888876 2344566666666431 22222222 234444321
Q ss_pred cccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccc
Q 002084 162 DSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (969)
Q Consensus 162 ~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ 241 (969)
+-+ +....-+|..+.++...- +.=+..+++|-|.+-..+.++ +. -.
T Consensus 211 ---KnP------------knyL~LAP~ffkllttSs-----------NNWmLIKiiKLF~aLtplEPR--Lg------KK 256 (877)
T KOG1059|consen 211 ---KNP------------QNYLQLAPLFYKLLVTSS-----------NNWVLIKLLKLFAALTPLEPR--LG------KK 256 (877)
T ss_pred ---hCC------------cccccccHHHHHHHhccC-----------CCeehHHHHHHHhhccccCch--hh------hh
Confidence 111 112234677777664321 112677888888887776532 11 12
Q ss_pred hHHHHHhhcCCCCcHHHHHHHHHHHHhcCC-----C---hhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhh
Q 002084 242 LLNFVFNSLQVQSSFDVAIEVLVELVGRHE-----G---LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (969)
Q Consensus 242 ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~-----~---~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (969)
+++.+.+.+.+...-...-||+..++.... + -++..+.++ +. .+.+.|. ..+-++-+
T Consensus 257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKL---r~-----fiedsDq-NLKYlgLl------ 321 (877)
T KOG1059|consen 257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKL---RI-----FIEDSDQ-NLKYLGLL------ 321 (877)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHH---hh-----hhhcCCc-cHHHHHHH------
Confidence 333333333332222222345544444311 1 111111111 11 1222332 22222211
Q ss_pred hhhHHHH-hcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHH
Q 002084 314 AAPSLIV-EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358 (969)
Q Consensus 314 ~~~~~l~-~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~ 358 (969)
....|. .|+..++..-+++|+|..-. |..|--.+++.-|.+.
T Consensus 322 -am~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 322 -AMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMV 364 (877)
T ss_pred -HHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence 122222 34445567788999998865 5667667777655443
No 71
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=36.80 E-value=5.4e+02 Score=27.25 Aligned_cols=238 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHh---ChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHH
Q 002084 502 MHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEAL 578 (969)
Q Consensus 502 ~~v~~~t~~~lig~ys~wl~~---~p~~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l 578 (969)
..+|.+++ .+++..-+-+.. ..+.....++|+.+.+.+......|.+++..|. .++..-. ......+..+.+..
T Consensus 13 ~~~R~ka~-~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~~-~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 13 PIIRAKAL-ELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFSP-ESAVKILRSLFQNV 89 (262)
T ss_pred HHHHHHHH-HHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCCh-hhHHHHHHHHHHhC
Q ss_pred HhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhh
Q 002084 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGT 658 (969)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~ 658 (969)
.-......+|..+++=+-.+++. ....+..+-...+..+-++++...+ -++|..+=.
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~------~~~~l~~~~~~fv~~~i~~~~gEkD-----------------PRnLl~~F~ 146 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLEN------HREALQSMGDDFVYGFIQLIDGEKD-----------------PRNLLLSFK 146 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHH------hHHHHHhchhHHHHHHHHHhccCCC-----------------HHHHHHHHH
Q ss_pred hcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhh
Q 002084 659 VFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENG--NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736 (969)
Q Consensus 659 i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~--~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~ 736 (969)
+.+.+....+. .+..+-...++.--.|+--. .-++|+ ...|..-+.++.++.+-.......+|.+++.+.+..
T Consensus 147 l~~~i~~~~~~-~~~~e~lFd~~~cYFPI~F~----pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~ 221 (262)
T PF14500_consen 147 LLKVILQEFDI-SEFAEDLFDVFSCYFPITFR----PPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTS 221 (262)
T ss_pred HHHHHHHhccc-chhHHHHHHHhhheeeeeee----CCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCC
Q ss_pred hhhcCcccHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 002084 737 VSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERF 773 (969)
Q Consensus 737 ~~~~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l 773 (969)
... -...|.++..++..||.. .+.+....+-..+
T Consensus 222 ~~~--K~D~L~tL~~c~~~y~~~-~~~~~~~~iw~~l 255 (262)
T PF14500_consen 222 PSV--KLDSLQTLKACIENYGAD-SLSPHWSTIWNAL 255 (262)
T ss_pred cHH--HHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
No 72
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.55 E-value=1.2e+03 Score=31.02 Aligned_cols=111 Identities=11% Similarity=0.123 Sum_probs=70.1
Q ss_pred cCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 002084 431 LRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (969)
Q Consensus 431 lg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~ 510 (969)
+|.+..+.+..+-. +.+..|...=.+.|.+++|++.-.+..+ |.+.++++.|-....+.. +.|+.+..
T Consensus 952 l~qPdLVYKFM~LA----nh~A~wnSk~GaAfGf~~i~~~a~~kl~----p~l~kLIPrLyRY~yDP~---~~Vq~aM~- 1019 (1702)
T KOG0915|consen 952 LGQPDLVYKFMQLA----NHNATWNSKKGAAFGFGAIAKQAGEKLE----PYLKKLIPRLYRYQYDPD---KKVQDAMT- 1019 (1702)
T ss_pred cCChHHHHHHHHHh----hhhchhhcccchhhchHHHHHHHHHhhh----hHHHHhhHHHhhhccCCc---HHHHHHHH-
Confidence 56655444443332 2345799999999999999877654443 677778877653221111 11332111
Q ss_pred HHHHhhHHHHHhC-----hhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHH
Q 002084 511 DVIGSYSKWISAF-----QTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (969)
Q Consensus 511 ~lig~ys~wl~~~-----p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~ 557 (969)
..-+. +-.+ -+|+..++.=|+.++.+.+ ++.++|.|+..|-+.
T Consensus 1020 sIW~~----Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1020 SIWNA----LITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HHHHH----hccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 11111 1112 2588999999999999876 899999999999876
No 73
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=34.58 E-value=94 Score=30.66 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=38.6
Q ss_pred HHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHH
Q 002084 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (969)
Q Consensus 511 ~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~ 557 (969)
.++..+++...++|..+.+.++.++.+|.++. ++..|...+.+|...
T Consensus 7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 45556667778999999999999999999865 888888888887754
No 74
>PTZ00429 beta-adaptin; Provisional
Probab=34.00 E-value=1e+03 Score=29.59 Aligned_cols=127 Identities=12% Similarity=0.093 Sum_probs=77.0
Q ss_pred ccCCChHHHHHHHHHHHHHhc-ChH-HHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHHHHH
Q 002084 17 NHDTESCNRVAANQWLVQFQQ-TDA-AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALL 94 (969)
Q Consensus 17 y~~~d~~~~~~A~~~L~~~Q~-s~~-aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~~Ll 94 (969)
..++|.+.|+-.--||..+-+ .|+ +-..+..+.+.-. ..++.+|=.|..||-. |+. ++ +-+.++
T Consensus 77 ~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~---d~Np~IRaLALRtLs~-Ir~------~~----i~e~l~ 142 (746)
T PTZ00429 77 APSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTT---NSSPVVRALAVRTMMC-IRV------SS----VLEYTL 142 (746)
T ss_pred hCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHc-CCc------HH----HHHHHH
Confidence 345688889999999988877 465 5556666665433 3456788777777742 221 22 333444
Q ss_pred HHHHH-hcCCChHHHHHHHHHHHHHHchhcc---CCchHHHHHHHhhcccCCCcchHHHHHHHhhchhc
Q 002084 95 VAAKR-FSSGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE 159 (969)
Q Consensus 95 ~~l~~-~~~~~~~v~~kL~~aLa~l~l~~~~---W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE 159 (969)
..+.+ ....++.||++-+.++..++-..++ =.++++.+...+... ++......+..|..+.++
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHh
Confidence 44443 2256789999999999998765442 124566666666532 344344555555555443
No 75
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=33.55 E-value=9.7e+02 Score=29.26 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHH
Q 002084 505 VYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICED 557 (969)
Q Consensus 505 ~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc~~ 557 (969)
..++ +.++|+|-.|+.-+---=.+.++.|++.+...+++.+||.++..+...
T Consensus 210 ~~~c-Ldc~g~fVSWIdInLIaNd~f~nLLy~fl~ieelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 210 INSC-LDCIGSFVSWIDINLIANDYFLNLLYKFLNIEELRIAACNCILAIVSK 261 (980)
T ss_pred HHHH-HHHHHHHhhhhhhhhhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 4444 699999999998654444567788888888778999999999888864
No 76
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=32.71 E-value=5.6e+02 Score=26.25 Aligned_cols=48 Identities=23% Similarity=0.142 Sum_probs=33.5
Q ss_pred cHHHHHHHH-HHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 002084 567 NLEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLL 616 (969)
Q Consensus 567 ~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll 616 (969)
+.+.++.-| ....+..++.+.+..+..|+-.|+..++..+ .+.+...+
T Consensus 152 h~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e--~~~l~a~L 200 (223)
T PF10441_consen 152 HAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHE--LQQLNASL 200 (223)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHc
Confidence 555554433 3334677999999999999999999998755 34444444
No 77
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=30.39 E-value=4.1e+02 Score=25.98 Aligned_cols=103 Identities=11% Similarity=0.055 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcc
Q 002084 790 QEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGS 869 (969)
Q Consensus 790 ~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~ 869 (969)
+-=|++...|+++..+++.|+..+ .+..++.....|+.- |.+...-+...+..++.....
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~------~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~------------- 98 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRI------DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE------------- 98 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH-------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH-------------
Confidence 336799999999999999876543 244567788888876 888888888888888765332
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHH
Q 002084 870 FNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAI 915 (969)
Q Consensus 870 ~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~~ 915 (969)
.+.+-+...-+.+-..+-.-+...+...+++..-|..|...-+
T Consensus 99 ---~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~ 141 (169)
T PF08623_consen 99 ---EVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRA 141 (169)
T ss_dssp ---HHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHH
Confidence 1222233333444444444466678888888888888877643
No 78
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=29.54 E-value=4.4e+02 Score=29.53 Aligned_cols=123 Identities=18% Similarity=0.115 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcc------cHHHHHHHHHHHhcCCC---CcchhHHHHHHHHhh
Q 002084 705 AACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHE------CYIRTASVVIEEFGHKD---EYGPLFVTTFERFSQ 775 (969)
Q Consensus 705 ~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~------~~L~l~~~li~~~g~~~---~~~~~~~~l~~~l~~ 775 (969)
++|.++|...+..+..+.+.+...++.+.+.|... +.. +.+++.+.+...-.... .-.+.+.++..-+.+
T Consensus 230 AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~-~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~ 308 (370)
T PF08506_consen 230 AACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN-PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQ 308 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC-CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHH
Confidence 55566665555555566666666667777767654 322 24566655543221110 001222233333444
Q ss_pred HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchh
Q 002084 776 AASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRG 838 (969)
Q Consensus 776 ~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~ 838 (969)
.. ++.|+ ++...+|=+..+.+.++..+-..-|.. .+..+++..+..|..++.-
T Consensus 309 ~v-~peL~--~~~~~~piLka~aik~~~~Fr~~l~~~-------~l~~~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 309 HV-LPELQ--PDVNSHPILKADAIKFLYTFRNQLPKE-------QLLQIFPLLVNHLQSSSYV 361 (370)
T ss_dssp HT-CHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HH-------HHHHHHHHHHHHTTSS-HH
T ss_pred Hh-HHHhc--ccCCCCcchHHHHHHHHHHHHhhCCHH-------HHHHHHHHHHHHhCCCCcc
Confidence 44 45565 245678888888888888877765543 4555677777778766543
No 79
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=29.22 E-value=5.2e+02 Score=28.47 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=42.0
Q ss_pred hhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCC---Ccccch-hhHH
Q 002084 831 CCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGV---SAMSRV-HKCA 906 (969)
Q Consensus 831 ~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~---~~rS~~-~~~~ 906 (969)
-|...++.+-..+..|+..++-.+.. .+ ..+..++.+.+.++.|..+++.-+-.+ .++..+ ....
T Consensus 246 LL~y~d~~VR~~Te~fL~~~lF~~~~-----~~------~~~d~~~~~~~~~R~Lg~~Cl~yLr~~yv~~~~~~v~~~~~ 314 (337)
T PF12030_consen 246 LLGYPDRSVRNGTEDFLQELLFSKEA-----ED------DDEDTRQRYREIARQLGQACLEYLRDTYVRRRRAQVERRTV 314 (337)
T ss_pred hhCCCchhHHHHHHHHHHHHhCCCCc-----cc------cChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 35667888888888999887743221 11 112234445556666666666544321 223444 5566
Q ss_pred HHHHHHHHHh
Q 002084 907 TILQQLAAIC 916 (969)
Q Consensus 907 ~iL~~l~~~~ 916 (969)
+.+..++..|
T Consensus 315 ~~i~~VI~~C 324 (337)
T PF12030_consen 315 ESILRVIEHC 324 (337)
T ss_pred HHHHHHHHHH
Confidence 6677766433
No 80
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=29.02 E-value=8.5e+02 Score=27.22 Aligned_cols=94 Identities=9% Similarity=0.123 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHHHHHh-----hhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCC
Q 002084 791 EPDLVEAYTNFASTFVRT-----SRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSI 865 (969)
Q Consensus 791 ~pDl~~~~f~l~~~~l~~-----~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~ 865 (969)
-|-.+...+.|+..++++ ......-. ...+..++.|.+.+ .+++...+-+..++..+++.+... .+..
T Consensus 224 p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~-~~~lp~lL~c~~~v--~e~~~~k~~a~e~l~~mv~~~~~~----~~~~ 296 (373)
T PF14911_consen 224 PPPRLASVLAFLQQLLKRLQRQNENQILTLL-RLVLPSLLECLMLV--NEEPQVKKLATELLQYMVESCQVG----SSGE 296 (373)
T ss_pred CCCcHHHHHHHHHHHHHhcCcccchhHHHHH-HHhhHHHHHHHhhc--CCCcchhHHHHHHHHHHHHccccc----Ccch
Confidence 355777778888888877 22221111 13455566654422 347777888999999999776531 1111
Q ss_pred CCccHHHHHHHHHHhccHHHHHHHHH
Q 002084 866 PEGSFNAMAIQVISHSGEGLVSNVVY 891 (969)
Q Consensus 866 ~~~~~~~~~~~~~~~~G~~Lv~~ll~ 891 (969)
+.++....++++++.|+..-...++.
T Consensus 297 ~~~~l~s~lrsfvqk~l~~~t~~~f~ 322 (373)
T PF14911_consen 297 PREQLTSVLRSFVQKYLAHYTYQYFQ 322 (373)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 22345677777877766644444443
No 81
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=28.79 E-value=4.2e+02 Score=23.57 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=37.3
Q ss_pred HHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHH
Q 002084 679 ALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ-HFVTLLPQVLDCLST 734 (969)
Q Consensus 679 ~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~-~~~p~l~~l~~~l~~ 734 (969)
...-|++..+...++ .+++-+.+++++...++.++. +..|+++.++-.+..
T Consensus 52 ~~~pQI~a~L~sal~-----~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 52 SARPQIMACLQSALE-----IPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHhC-----ChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 345566666666664 348999999999999999865 678888776665554
No 82
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.61 E-value=1.2e+03 Score=28.82 Aligned_cols=244 Identities=16% Similarity=0.199 Sum_probs=115.5
Q ss_pred chHHHHHHHHHhcccCch--hHHHHHHHHHHHHHhhcccC--CCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002084 526 NARPLLLFLAAGISEAVS--SNACASALRKICEDASALID--EPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (969)
Q Consensus 526 ~L~~~l~~l~~~l~~~~~--~~~Aa~al~~lc~~c~~~l~--~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (969)
+....+.-+|.++.-|+- ..--.+|++++-.-...... .|..+..|.++.....+..-++.---.++|+||.+|..
T Consensus 545 ~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~ 624 (960)
T KOG1992|consen 545 FVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRK 624 (960)
T ss_pred HHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 445566777777766541 23346777777655444321 12344555566655444444566678899999999976
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHH-HHhhhhhcccccccCCCCCCCCchHHHH
Q 002084 602 VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRG-LYRMGTVFSHLPVPLPTNPAGDDPIFAL 680 (969)
Q Consensus 602 lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-l~~L~~i~~~l~~~~~~~~~~~~p~~~~ 680 (969)
.-... ..++..+-.-++--++.++.++.. ..+-+ +.-++.+...-..+ -+++
T Consensus 625 t~~~~--~~~vs~~e~aL~p~fq~Il~eDI~---------------EfiPYvfQlla~lve~~~~~------ip~~---- 677 (960)
T KOG1992|consen 625 TCKAN--PSAVSSLEEALFPVFQTILSEDIQ---------------EFIPYVFQLLAVLVEHSSGT------IPDS---- 677 (960)
T ss_pred HhccC--chHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhcCCC------Cchh----
Confidence 54321 122333333333344445543311 11111 22222222221111 1122
Q ss_pred HHhHHHHHHHHHHh-hhccchHHHHHHHHHHHHHHHh----hh--hhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHH
Q 002084 681 LRVFWPMLEKLFRS-EHMENGNLSTAACRALSLAIQS----SG--QHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVI 753 (969)
Q Consensus 681 ~~~i~~~l~~il~~-~~~~~~~v~e~~c~~l~~~~~~----~~--~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li 753 (969)
.||++.-+++. .|...+.| -++.++++..+.. .. ....+.|. +++.++.+= ..++++ | |++..++
T Consensus 678 ---~~~l~~~lLsp~lW~r~gNi-palvrLl~aflk~g~~~~~~~~~l~~iLG-ifqkLiaSk-a~Dh~G-F-~LLn~i~ 749 (960)
T KOG1992|consen 678 ---YSPLFPPLLSPNLWKRSGNI-PALVRLLQAFLKTGSQIVEAADKLSGILG-IFQKLIASK-ANDHHG-F-YLLNTII 749 (960)
T ss_pred ---HHHHHHHhcCHHHHhhcCCc-HHHHHHHHHHHhcCchhhcccccchhHHH-HHHHHhcCc-ccchhH-H-HHHHHHH
Confidence 23444333321 25433322 3344444444332 11 11222222 223333211 111222 2 6777777
Q ss_pred HHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHH
Q 002084 754 EEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVL 814 (969)
Q Consensus 754 ~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll 814 (969)
..+... +..+.+.+++..+. +.+++ +.-|.-+..+.-|+..+.-+..+..+
T Consensus 750 ~~~~~~-~~~py~k~i~~llf-----~Rlqn----skT~kf~k~~~vF~~~~~ik~~~~~l 800 (960)
T KOG1992|consen 750 ESIPPN-ELAPYMKQIFGLLF-----QRLQN----SKTEKFVKSFIVFFSLFTIKKGGLML 800 (960)
T ss_pred hcCCHh-hhhHHHHHHHHHHH-----HHHhc----cCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 776653 23455555555443 33443 34577888888888888877655543
No 83
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.30 E-value=1.2e+03 Score=28.70 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHHhcC
Q 002084 679 ALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGH 758 (969)
Q Consensus 679 ~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g~ 758 (969)
.....+.|-++.++. + .++-|..++..|.-|.++.....+.-|++.....+.. ..|+..+.....+.+....
T Consensus 138 EmardlapeVe~Ll~--~-~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~e-----k~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQ--H-RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCE-----KHHGVLIAGLHLITELCKI 209 (866)
T ss_pred HHhHHhhHHHHHHHh--C-CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhh-----cCCceeeeHHHHHHHHHhc
Q ss_pred CCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchh
Q 002084 759 KDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRG 838 (969)
Q Consensus 759 ~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~ 838 (969)
.++....+..+...|... +..+.+.....+|. +-..+.|+++--+-..+.-+...+.+
T Consensus 210 ~~~~l~~fr~l~~~lV~i--Lk~l~~~~yspeyd--------------------v~gi~dPFLQi~iLrlLriLGq~d~d 267 (866)
T KOG1062|consen 210 SPDALSYFRDLVPSLVKI--LKQLTNSGYSPEYD--------------------VHGISDPFLQIRILRLLRILGQNDAD 267 (866)
T ss_pred CHHHHHHHHHHHHHHHHH--HHHHhcCCCCCccC--------------------ccCCCchHHHHHHHHHHHHhcCCCcc
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHH
Q 002084 839 AALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCA 906 (969)
Q Consensus 839 ~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~~~~~ 906 (969)
+.......+..+.+++-.+ .+-|..++..+++.+..--|.+.+..++
T Consensus 268 aSd~M~DiLaqvatntdss---------------------kN~GnAILYE~V~TI~~I~~~~~Lrvla 314 (866)
T KOG1062|consen 268 ASDLMNDILAQVATNTDSS---------------------KNAGNAILYECVRTIMDIRSNSGLRVLA 314 (866)
T ss_pred HHHHHHHHHHHHHhccccc---------------------ccchhHHHHHHHHHHHhccCCchHHHHH
No 84
>PRK10236 hypothetical protein; Provisional
Probab=28.24 E-value=1.1e+02 Score=31.31 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHH---HHhc---ChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcC
Q 002084 7 IKVAQAVHVLNHDTESCNRVAANQWLV---QFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (969)
Q Consensus 7 ~~v~~ai~~ly~~~d~~~~~~A~~~L~---~~Q~---s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~ 77 (969)
+++...+..|-++.|-.. +..+-|. .+++ .+.-..--++++. .+.|+||+.++.+.++..
T Consensus 20 edL~~Lv~~Lt~d~dG~~--R~te~lt~~~~yk~~~~~~~~~~~yw~~Ia---------~elq~fGgnt~~n~lRG~ 85 (237)
T PRK10236 20 EQLANFARLLTHNEKGKT--RLSSVLMRNELFKSMEGHPEQHRRNWQLIA---------GELQHFGGDSIANKLRGH 85 (237)
T ss_pred HHHHHHHHHHhcCCCCCE--eehhhhcccHHHHhhcccchhHHHHHHHHH---------HHHHHhcchHHHHHHhcC
Confidence 567777888766544322 2333333 4555 3333222233443 389999999999888853
No 85
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=27.90 E-value=1.1e+03 Score=27.91 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHH-hcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHH
Q 002084 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQF-QQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILK 71 (969)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~-Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~ 71 (969)
..+++.++++.+..++....|=.|-..|+++ ++.|+-...|..=+.+=-+ ..+..+--||-.||-
T Consensus 300 ~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIs--d~Nr~IstyAITtLL 365 (898)
T COG5240 300 FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLIS--DENRTISTYAITTLL 365 (898)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhh--cccccchHHHHHHHH
Confidence 3445666666666666666777777777765 3456655555432211000 123456677766663
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=27.23 E-value=9.7e+02 Score=27.26 Aligned_cols=158 Identities=14% Similarity=0.094 Sum_probs=88.1
Q ss_pred ChhHhHHHHHHHHhhhhccccCCcccchhHHHH-HHHHh--ccCchhhhhhHHHHHHHHHHHHHHhhH-HHHHhChhchH
Q 002084 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAVL--SASRSEELKGFMHIVYRSLADVIGSYS-KWISAFQTNAR 528 (969)
Q Consensus 453 ~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~-ll~~l--~~~~~~~~~~~~~v~~~t~~~lig~ys-~wl~~~p~~L~ 528 (969)
++...-+++-++.++..-...++. +..+++ ....+ ...+..+ ..++ .++.=.+ ..+-++...-.
T Consensus 203 ~~~~~~~~~~~la~LvNK~~~~~~---l~~~l~~~~~~~~~~~~~~~~--------~~~~-~~~~Wi~KaLv~R~~~~~~ 270 (415)
T PF12460_consen 203 DEFSRLAALQLLASLVNKWPDDDD---LDEFLDSLLQSISSSEDSELR--------PQAL-EILIWITKALVMRGHPLAT 270 (415)
T ss_pred ChHHHHHHHHHHHHHHcCCCChhh---HHHHHHHHHhhhcccCCcchh--------HHHH-HHHHHHHHHHHHcCCchHH
Confidence 366677778888887655543332 234443 33334 1111111 1111 1211111 12223333455
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccH--------HHHHHHHHHHHh--cCCChhhHHHHHHHHHHH
Q 002084 529 PLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNL--------EILMWIGEALEK--RHLPLEDEEEVVGAISLI 598 (969)
Q Consensus 529 ~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~~~~--------~~l~~~~~~l~~--~~l~~~~~~~l~eai~~i 598 (969)
..++.|+..+.++++...||++|.-|..+....+....+. -.|..+...+.+ ..-+.+.+...+.|++++
T Consensus 271 ~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 271 ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 6777788888889999999999999998855443221111 122233333322 122334678888999999
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHH
Q 002084 599 LGSVSNKELKNNLLARLLSSSYEAI 623 (969)
Q Consensus 599 i~~lp~~~~~~~~l~~ll~p~~~~l 623 (969)
+..+|..- ....+..++.-+++.+
T Consensus 351 l~~vP~~v-l~~~l~~LlPLLlqsL 374 (415)
T PF12460_consen 351 LKNVPKSV-LLPELPTLLPLLLQSL 374 (415)
T ss_pred HhhCCHHH-HHHHHHHHHHHHHHHh
Confidence 99999754 5666777775555544
No 87
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=27.06 E-value=54 Score=30.85 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=30.5
Q ss_pred HHHHHhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHH
Q 002084 510 ADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASAL 551 (969)
Q Consensus 510 ~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~~~~~~Aa~al 551 (969)
+.++++|..|+.-+.-.-.+.++.+++.++++.+...|+..+
T Consensus 107 L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 107 LKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 588888888876433222348888889999999888888764
No 88
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=27.05 E-value=4.4e+02 Score=33.29 Aligned_cols=137 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccccCCcccchhHHHHHHH------------------------HhccCchhhh----hhHHHHHHHHH
Q 002084 458 ETKLFALNVVSEVVLQEGQAFDFSVIMQLVA------------------------VLSASRSEEL----KGFMHIVYRSL 509 (969)
Q Consensus 458 Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~------------------------~l~~~~~~~~----~~~~~v~~~t~ 509 (969)
+|++|...+++.+-...+-...+..+...+. ..++.|+.-. ..+.+|-..+
T Consensus 446 DaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rs- 524 (1133)
T KOG1943|consen 446 DAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRS- 524 (1133)
T ss_pred HHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhh-
Q ss_pred HHHHHhhHHHHHhChhchHHHHHHHHHh-ccc--CchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChh
Q 002084 510 ADVIGSYSKWISAFQTNARPLLLFLAAG-ISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLE 586 (969)
Q Consensus 510 ~~lig~ys~wl~~~p~~L~~~l~~l~~~-l~~--~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~ 586 (969)
+.-+..+.+++..|.|..++++=++.. +.+ +.++..||.|+.+|...-.+.+.. ..++.++.... .-+..
T Consensus 525 -Ncy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~-~~L~~lld~~l-----s~~~~ 597 (1133)
T KOG1943|consen 525 -NCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD-YVLPPLLDSTL-----SKDAS 597 (1133)
T ss_pred -hHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc-cchhhhhhhhc-----CCChH
Q ss_pred hHHHHHHHHHHHhccC
Q 002084 587 DEEEVVGAISLILGSV 602 (969)
Q Consensus 587 ~~~~l~eai~~ii~~l 602 (969)
.|...+-+.|.|+.+.
T Consensus 598 ~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 598 MRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HhhhhHHHHHHHHHHh
No 89
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=26.89 E-value=1e+03 Score=27.52 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=41.7
Q ss_pred CCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhh-ccCchhHHHHHHHHHHHHHhhh
Q 002084 791 EPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC-TAMHRGAALAAMSYLSCFLEEC 854 (969)
Q Consensus 791 ~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l-~~~e~~~~~a~~~Fl~~li~~~ 854 (969)
+.....++|.|+..+++.+...+-. ..+..+++.++.-+ ......-++++++++..++..+
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~e---~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~ 208 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLDE---DEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYG 208 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC
Confidence 5667889999999999987655432 34555555544333 4455566788899988888753
No 90
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=26.20 E-value=2e+03 Score=30.63 Aligned_cols=501 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCC----------------------ChHHHHHHHHHHHHHh-cChHHHH---------HHHHhhccC
Q 002084 5 LQIKVAQAVHVLNHDT----------------------ESCNRVAANQWLVQFQ-QTDAAWE---------IATSILTSD 52 (969)
Q Consensus 5 ~~~~v~~ai~~ly~~~----------------------d~~~~~~A~~~L~~~Q-~s~~aW~---------~~~~LL~~~ 52 (969)
.++.|..|+..+|+++ +.+.+.+|=.-|..+- .+++.|+ .-.++|.++
T Consensus 379 vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~ 458 (2102)
T PLN03200 379 VQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS 458 (2102)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC
Q ss_pred CCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHHH-HHHHHHH-hcCCChHHHHHHHHHHHHHHchhccCCchHH
Q 002084 53 RQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNA-LLVAAKR-FSSGPPQLLTQICLALSALILRAVEHGKPIE 130 (969)
Q Consensus 53 ~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~~-Ll~~l~~-~~~~~~~v~~kL~~aLa~l~l~~~~W~~~i~ 130 (969)
+ .++|..|+.++++--.. +++++..+.+. .+..|.+ +..++..++..-+-+|.+++. .+.-+.
T Consensus 459 s------~~iQ~~A~~~L~nLa~~-----ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~----~~~qir 523 (2102)
T PLN03200 459 S------EQQQEYAVALLAILTDE-----VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCC----HSEDIR 523 (2102)
T ss_pred C------HHHHHHHHHHHHHHHcC-----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC----CcHHHH
Q ss_pred HHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchh
Q 002084 131 KLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLH 210 (969)
Q Consensus 131 ~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~ 210 (969)
.++..-+- .+.++++|+.=..++ ...--..+..-+...-..++.-+...+.. ++.
T Consensus 524 ~iV~~aGA-------IppLV~LL~sgd~~~----------q~~Aa~AL~nLi~~~d~~~I~~Lv~LLls--------dd~ 578 (2102)
T PLN03200 524 ACVESAGA-------VPALLWLLKNGGPKG----------QEIAAKTLTKLVRTADAATISQLTALLLG--------DLP 578 (2102)
T ss_pred HHHHHCCC-------HHHHHHHHhCCCHHH----------HHHHHHHHHHHHhccchhHHHHHHHHhcC--------CCh
Q ss_pred hhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcCCChhHHHH-----hhhhh
Q 002084 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALL-----CRVPF 283 (969)
Q Consensus 211 ~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~-----~~~~~ 283 (969)
.....+++.+..-+..+....+-........-++.+.+.|.++ +..+.|+.++..+.....+..+.++ |-++.
T Consensus 579 ~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~ 658 (2102)
T PLN03200 579 ESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK 658 (2102)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH
Q ss_pred hHHhhhhhhhccCchhHHhhHHHHHHHHh-----hhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHH
Q 002084 284 LKELLLLPALTDGDEKVIGGLACLMSEIG-----QAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358 (969)
Q Consensus 284 l~~~~~~~~~~~~d~d~~~~l~~l~~~~~-----e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~ 358 (969)
.+...+.+..+.-|.-+..+. +.....+..+- +..|..+...+ |.++.+.++.--..+.
T Consensus 659 --------LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga------V~pL~~LL~~~--d~~v~e~Al~ALanLl 722 (2102)
T PLN03200 659 --------LLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDA------IKPLIKLAKSS--SIEVAEQAVCALANLL 722 (2102)
T ss_pred --------HHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCC------HHHHHHHHhCC--ChHHHHHHHHHHHHHH
Q ss_pred HHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 002084 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQ 438 (969)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~ 438 (969)
.. .+.. ..-...-..+.+.+++ ++.=.+-|+..+-.+...|.--..+..+.
T Consensus 723 ~~----~e~~---~ei~~~~~I~~Lv~lL----------------------r~G~~~~k~~Aa~AL~~L~~~~~~~~~~~ 773 (2102)
T PLN03200 723 SD----PEVA---AEALAEDIILPLTRVL----------------------REGTLEGKRNAARALAQLLKHFPVDDVLK 773 (2102)
T ss_pred cC----chHH---HHHHhcCcHHHHHHHH----------------------HhCChHHHHHHHHHHHHHHhCCChhHHHH
Q ss_pred HHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHH
Q 002084 439 KVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK 518 (969)
Q Consensus 439 ~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~ 518 (969)
... .+.+++-.+.+.....+... ....+.+..+...-..++ ..=-+|..
T Consensus 774 ~~~-----------------~~~g~v~~l~~~L~~~~~~~--~~~~~al~~l~~l~~~~~------------~~~~~~~~ 822 (2102)
T PLN03200 774 DSV-----------------QCRGTVLALVDLLNSTDLDS--SATSEALEALALLARTKG------------GANFSHPP 822 (2102)
T ss_pred HHH-----------------HHhCcHHHHHHHHhcCCcch--hhHHHHHHHHHHHHhhcc------------cCCCCCCc
Q ss_pred H--HHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 002084 519 W--ISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAIS 596 (969)
Q Consensus 519 w--l~~~p~~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~ 596 (969)
| |...|.-|.+.+..+ .-++|.++..|..-+.++|++=...|.. .+..-..++..+.+..+...+.+-=+.|.+
T Consensus 823 ~~~~~e~p~~l~~l~~~l--~~~~p~~~~kai~il~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (2102)
T PLN03200 823 WAVLAEVPSSLEPLVRCL--AEGHPLVQDKAIEILSRLCRDQPVVLGD--LIANASKCISSLADRIINSSSLEVKIGGTA 898 (2102)
T ss_pred hhhHHhccCchHHHHHHH--HcCChHHHHHHHHHHHHHhccChhHHHH--HHhcccchHHHHHHHHhhcCCceEEecchh
Q ss_pred HHhccCCchHHH-------HHHHHHHHHHHHHHHHh
Q 002084 597 LILGSVSNKELK-------NNLLARLLSSSYEAIGK 625 (969)
Q Consensus 597 ~ii~~lp~~~~~-------~~~l~~ll~p~~~~l~~ 625 (969)
.+|.+.....+. ..++..|+.-++.-+++
T Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (2102)
T PLN03200 899 LLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQ 934 (2102)
T ss_pred hhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhc
No 91
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=1.1e+03 Score=27.43 Aligned_cols=132 Identities=13% Similarity=0.092 Sum_probs=70.4
Q ss_pred HhHHHHHHHHhhhhccccCCcccc-hhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh---ch--HH
Q 002084 456 EVETKLFALNVVSEVVLQEGQAFD-FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT---NA--RP 529 (969)
Q Consensus 456 ~~Ea~Lf~l~~iae~~~~~~~~~~-l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~---~L--~~ 529 (969)
++|| .|+|..||..-.+...... -..++- +..+...|.. .|+-.++ +.+|..+. ..|. +. ..
T Consensus 127 q~eA-AWaLTnIAsgtse~T~~vv~agavp~-fi~Ll~s~~~------~v~eQav-WALgNIag---ds~~~Rd~vl~~g 194 (514)
T KOG0166|consen 127 QFEA-AWALTNIASGTSEQTKVVVDAGAVPI-FIQLLSSPSA------DVREQAV-WALGNIAG---DSPDCRDYVLSCG 194 (514)
T ss_pred HHHH-HHHHHHHhcCchhhccccccCCchHH-HHHHhcCCcH------HHHHHHH-HHHhcccc---CChHHHHHHHhhc
Confidence 4555 5788888766553222110 011222 2233344442 2566564 78877653 3332 21 13
Q ss_pred HHHHHHHhcccCc---hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHhccCC
Q 002084 530 LLLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVS 603 (969)
Q Consensus 530 ~l~~l~~~l~~~~---~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~ii~~lp 603 (969)
++.-|+..+..+. ..+.+..++.+||+.+.. ++.++.+..+...+.. ...|.+......=+++++...-+
T Consensus 195 ~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P----~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP----SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred chHHHHHHhccccchHHHHHHHHHHHHHHcCCCC----CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 4455555555433 567789999999977652 2244444444444322 34456666777778887766544
No 92
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=23.91 E-value=4.3e+02 Score=28.38 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCh---HHHHHHHHhhccCCCCCCccchhHHhh-hHHHHHHhhcCcCCC
Q 002084 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD---AAWEIATSILTSDRQSFLTDFEVEFFA-AQILKRKIQNEGYYL 81 (969)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~---~aW~~~~~LL~~~~~~~~~~~~v~ffa-A~tL~~kI~~~~~~l 81 (969)
++.|.+++..+-.-...........+|...-++- ..|.+...|+..-- ...--.||- +.. .++. .....
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl----~~v~~e~~~~~p~--~~~~-~~~~~ 74 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKL----EKVIDEFFESAPE--ESGP-QNPNV 74 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH----HHHHHHHHhcCcc--ccCC-CCCCc
Confidence 4567788888776555567788889998888873 46888777775410 001112220 000 1111 12234
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002084 82 QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSAL 118 (969)
Q Consensus 82 ~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l 118 (969)
.......++..+..++..|.. +|+.+.+||..|..=
T Consensus 75 ~~~~~~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~P 110 (288)
T PF09184_consen 75 EPEDYEEMKERILELLDSFDE-PPFTIQRLCELLLDP 110 (288)
T ss_pred chhhHHHHHHHHHHHHHhcCC-CChhHHHHHHHHhCh
Confidence 456678899999999988876 999999999766553
No 93
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=23.71 E-value=3e+02 Score=24.14 Aligned_cols=96 Identities=18% Similarity=0.058 Sum_probs=53.1
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhcC-h---------HHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCC
Q 002084 13 VHVLNHDTESCNRVAANQWLVQFQQT-D---------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (969)
Q Consensus 13 i~~ly~~~d~~~~~~A~~~L~~~Q~s-~---------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~ 82 (969)
+..+..++++..+..|=..|..+-.. | +++.....+|..+ +..++..++.+|.+-....
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------~~~v~~~a~~~L~~l~~~~----- 80 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE------DEEVVKAALWALRNLAAGP----- 80 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC------CHHHHHHHHHHHHHHccCc-----
Confidence 33333355677777777777777654 3 4455555666543 3688888888887765532
Q ss_pred hHHHHH-HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Q 002084 83 SAAKDA-LLNALLVAAKRFS-SGPPQLLTQICLALSALI 119 (969)
Q Consensus 83 ~~~~~~-Lr~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~ 119 (969)
++.... .+..++..+.++- .++..++...+.+|..++
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 122222 2222444443322 334567777776666553
No 94
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=22.55 E-value=6.5e+02 Score=24.97 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=53.6
Q ss_pred hcccC--chhHHHHHHHHHHHHHhhcccCC------C--ccH-------HHHHHHHHHHH---hcCCChhhHHHHHHHHH
Q 002084 537 GISEA--VSSNACASALRKICEDASALIDE------P--SNL-------EILMWIGEALE---KRHLPLEDEEEVVGAIS 596 (969)
Q Consensus 537 ~l~~~--~~~~~Aa~al~~lc~~c~~~l~~------~--~~~-------~~l~~~~~~l~---~~~l~~~~~~~l~eai~ 596 (969)
.+.|| .++.+|+.++..+-+.++..+.. + .|. ..+.++++.+. ...-+......++++++
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la 127 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLA 127 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33454 47888888887776666543311 0 122 23444444442 12223446678899999
Q ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 002084 597 LILGSVSNKELKNNLLARLLSSSYEAIGKLIDG 629 (969)
Q Consensus 597 ~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~ 629 (969)
.++++.|-+.... .++..++..+...+..
T Consensus 128 ~Lv~~tPY~rL~~----~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 128 VLVQATPYHRLPP----GLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHHccCChhhcCH----hHHHHHHHHHHHHHhc
Confidence 9999999876433 5666666666666654
No 95
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.43 E-value=1.2e+03 Score=26.57 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=38.7
Q ss_pred CCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 002084 790 QEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSC 849 (969)
Q Consensus 790 ~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~ 849 (969)
.++-=---|++.+..++...|..-+. .....+|.....|+..+|..++..|+.||.+
T Consensus 267 t~s~Kev~FL~el~~il~~~~~~~f~---~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 267 TNSQKEVLFLNELEEILEVLPPEEFQ---KIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHH---HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred CCchhHHHHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 34444445777778888776544443 3466678888888999999999999988743
No 96
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=21.42 E-value=1.1e+02 Score=22.34 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 002084 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQ 34 (969)
Q Consensus 3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~ 34 (969)
|...+.-...+..+-...++..+.+|.+.|.+
T Consensus 12 ~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 12 MGDLEGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44445555555554456677788888887765
No 97
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=20.38 E-value=1.6e+03 Score=27.43 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=83.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCcHH----HHHHHHhhh----hcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchh
Q 002084 410 PDGLVQFRMNLVELLVDICQLLRSAT----FIQKVFFGS----WGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481 (969)
Q Consensus 410 ~d~f~~fR~~~~d~l~~~~~ilg~~~----~l~~l~~~~----~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~ 481 (969)
.||-..||+-+.+++..+...+|... .-.+++.++ +.+.. +.-.+|-+++.+...+..-..+ .+|
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt------~d~vml~gfg~V~~~lg~r~kp-ylp 798 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT------EDSVMLLGFGTVVNALGGRVKP-YLP 798 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc------chhhhhhhHHHHHHHHhhcccc-chH
Confidence 45557899999999999998888631 223333332 22111 1125567777776666432231 256
Q ss_pred HHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh--chHHHHHHHHHhccc--CchhHHHHHHHHHHHHH
Q 002084 482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT--NARPLLLFLAAGISE--AVSSNACASALRKICED 557 (969)
Q Consensus 482 ~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~--~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~ 557 (969)
+|+.-+....++++.. +|..++ .++|+.+.-++...+ .+..+=..|...|.. |++-..--.|+..|+..
T Consensus 799 qi~stiL~rLnnksa~------vRqqaa-dlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nv 871 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAK------VRQQAA-DLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNV 871 (1172)
T ss_pred HHHHHHHHHhcCCChh------HHHHHH-HHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 6666444444554422 677775 999999998887543 445555556677764 77766667777777765
Q ss_pred h
Q 002084 558 A 558 (969)
Q Consensus 558 c 558 (969)
-
T Consensus 872 i 872 (1172)
T KOG0213|consen 872 I 872 (1172)
T ss_pred c
Confidence 4
No 98
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.33 E-value=1.4e+03 Score=27.98 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=69.9
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHH
Q 002084 698 ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAA 777 (969)
Q Consensus 698 ~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~ 777 (969)
.|..+.|.+-..++..+..-+.. -+++.++.-|..+ ...- .+.+++ ..+. |.-..+|..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~t-~s~~---~~~il~-~~~~-----P~~K~~~~~l~~~- 78 (668)
T PF04388_consen 16 NDLSVLEEIKALLQELLNSDREP------WLVNGLVDYYLST-NSQR---ALEILV-GVQE-----PHDKHLFDKLNDY- 78 (668)
T ss_pred CchhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhhc-CcHH---HHHHHH-hcCC-----ccHHHHHHHHHHH-
Confidence 56777888877777777665432 2344444444433 2212 223333 1222 1112333333332
Q ss_pred HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhc-cccchHHHHHHHHHhhccC-chhHHHHHHHHHHHHHhh
Q 002084 778 SVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAA-SGALLEVSFQKAAICCTAM-HRGAALAAMSYLSCFLEE 853 (969)
Q Consensus 778 ~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~-~~~~l~~i~~~~l~~l~~~-e~~~~~a~~~Fl~~li~~ 853 (969)
-..|+..-..+.|++.++++.|..+... ..+++..++. +|..+ +..++.+|+..+..++-.
T Consensus 79 -----------~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk----~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 79 -----------FVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLK----CLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred -----------HcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHH----HHhhcccHHHHHHHHHHHHHHhcc
Confidence 2458899999999999999988776543 1245555444 56544 455577777777777743
Done!