Query 002084
Match_columns 969
No_of_seqs 226 out of 1101
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 11:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hat_C Exportin-1; heat repeat 100.0 1.9E-86 6.5E-91 825.3 73.3 865 6-946 15-970 (1023)
2 3gjx_A Exportin-1; transport, 100.0 4.3E-85 1.5E-89 806.1 69.3 875 6-946 27-990 (1073)
3 2x1g_F Cadmus; transport prote 100.0 3.9E-84 1.3E-88 823.5 65.5 867 1-942 1-921 (971)
4 2x19_B Importin-13; nuclear tr 100.0 2.4E-79 8.2E-84 780.0 80.2 859 1-942 18-909 (963)
5 3ibv_A Exportin-T; karyopherin 100.0 1.3E-79 4.4E-84 764.7 72.3 851 6-944 5-942 (980)
6 3m1i_C Exportin-1; heat repeat 100.0 4.6E-69 1.6E-73 687.0 76.3 833 6-914 15-929 (1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 4.4E-54 1.5E-58 549.7 61.5 778 5-833 9-928 (1204)
8 1wa5_C Importin alpha RE-expor 100.0 4.4E-31 1.5E-35 334.1 63.5 724 3-851 1-790 (960)
9 4fdd_A Transportin-1; heat rep 100.0 1.2E-30 4.2E-35 326.8 60.2 702 4-914 10-742 (852)
10 2bpt_A Importin beta-1 subunit 100.0 3.1E-27 1.1E-31 297.2 69.8 717 7-853 4-764 (861)
11 1qgr_A Protein (importin beta 100.0 1.3E-23 4.5E-28 264.6 62.8 712 9-854 3-776 (876)
12 1ibr_B P95, importin beta-1 su 99.9 6.1E-20 2.1E-24 213.0 32.6 433 9-539 3-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.4 6.7E-10 2.3E-14 144.4 46.4 673 7-853 6-722 (1230)
14 1w9c_A CRM1 protein, exportin 99.4 1.8E-11 6.1E-16 128.2 22.8 175 722-914 68-245 (321)
15 2bpt_A Importin beta-1 subunit 99.3 1.5E-06 5.2E-11 108.5 64.6 543 210-855 109-714 (861)
16 4fdd_A Transportin-1; heat rep 99.3 1.3E-05 4.5E-10 99.7 67.4 360 451-854 411-786 (852)
17 1qgr_A Protein (importin beta 99.3 4.2E-06 1.4E-10 104.7 63.3 542 214-853 107-723 (876)
18 1b3u_A Protein (protein phosph 98.7 7.9E-05 2.7E-09 88.3 39.0 562 4-712 7-584 (588)
19 1u6g_C TIP120 protein, CAND1; 98.6 0.00019 6.6E-09 93.0 43.8 508 209-810 19-601 (1230)
20 1b3u_A Protein (protein phosph 98.6 0.0001 3.4E-09 87.4 37.4 473 9-598 88-585 (588)
21 1ibr_B P95, importin beta-1 su 97.3 0.35 1.2E-05 54.4 34.5 112 451-573 339-454 (462)
22 2vgl_B AP-2 complex subunit be 97.0 0.27 9.4E-06 57.7 29.1 460 16-597 57-529 (591)
23 2qk1_A Protein STU2; STU2P, XM 96.7 0.052 1.8E-06 55.9 17.8 157 451-617 27-194 (249)
24 2x1g_F Cadmus; transport prote 96.4 1.4 4.6E-05 55.2 31.3 298 505-855 481-817 (971)
25 2qk2_A LP04448P; mini spindles 96.3 0.12 4.1E-06 52.8 17.2 154 451-622 26-184 (242)
26 4hat_C Exportin-1; heat repeat 95.7 1.6 5.5E-05 54.4 26.7 311 505-855 470-836 (1023)
27 2jdq_A Importin alpha-1 subuni 95.5 0.45 1.5E-05 53.4 19.4 335 209-600 33-390 (450)
28 3m1i_C Exportin-1; heat repeat 95.1 1.4 4.8E-05 55.5 23.8 394 505-962 470-918 (1049)
29 2vgl_B AP-2 complex subunit be 95.0 7.3 0.00025 45.3 28.0 413 17-552 95-528 (591)
30 1wa5_B Importin alpha subunit; 94.8 1 3.5E-05 51.8 19.7 330 209-601 100-458 (530)
31 3gjx_A Exportin-1; transport, 94.7 4.4 0.00015 50.4 25.7 59 798-856 802-863 (1073)
32 1w63_A Adapter-related protein 94.4 10 0.00035 44.3 36.9 467 19-598 81-575 (618)
33 2x19_B Importin-13; nuclear tr 94.4 2 6.7E-05 53.7 22.3 291 511-852 429-752 (963)
34 4b8j_A Importin subunit alpha- 94.3 4.9 0.00017 46.0 24.0 341 452-854 86-445 (528)
35 2z6g_A B-catenin; FULL-length, 93.6 17 0.00056 43.9 30.6 287 8-351 116-420 (780)
36 2qk2_A LP04448P; mini spindles 93.5 1.1 3.9E-05 45.3 14.9 150 683-853 56-206 (242)
37 1wa5_C Importin alpha RE-expor 93.0 23 0.00078 43.9 55.6 299 505-853 422-749 (960)
38 3tpo_A Importin subunit alpha- 92.9 15 0.00052 41.9 24.9 298 209-559 89-409 (529)
39 1wa5_B Importin alpha subunit; 92.5 18 0.0006 41.3 25.9 338 452-854 99-459 (530)
40 2qk1_A Protein STU2; STU2P, XM 91.7 1.6 5.3E-05 44.6 12.8 151 453-615 74-234 (249)
41 2jdq_A Importin alpha-1 subuni 90.5 24 0.00081 38.8 25.8 296 12-359 69-390 (450)
42 4b8j_A Importin subunit alpha- 90.0 30 0.001 39.3 25.0 287 21-359 131-443 (528)
43 1w63_A Adapter-related protein 88.3 44 0.0015 38.9 26.3 109 504-628 123-233 (618)
44 1w9c_A CRM1 protein, exportin 87.2 9.4 0.00032 39.9 14.4 170 211-395 44-225 (321)
45 3ibv_A Exportin-T; karyopherin 87.1 63 0.0022 39.9 24.5 167 685-855 534-733 (980)
46 4hxt_A De novo protein OR329; 85.4 31 0.001 34.2 20.3 220 9-270 4-243 (252)
47 4db8_A Armadillo-repeat protei 84.9 14 0.00048 37.0 14.6 191 39-270 11-211 (252)
48 2vgl_A Adaptor protein complex 84.8 65 0.0022 37.4 22.2 108 504-628 127-238 (621)
49 1oyz_A Hypothetical protein YI 84.2 39 0.0013 34.4 22.4 217 9-266 25-248 (280)
50 4hxt_A De novo protein OR329; 82.5 30 0.001 34.3 16.0 185 45-270 7-201 (252)
51 4db6_A Armadillo repeat protei 81.0 11 0.00037 36.6 11.5 188 38-266 10-207 (210)
52 2iw3_A Elongation factor 3A; a 80.6 63 0.0021 39.5 19.8 239 458-747 70-313 (986)
53 3u0r_A Apoptosis inhibitor 5; 80.2 69 0.0024 35.3 17.8 132 681-815 213-366 (507)
54 3ul1_B Importin subunit alpha- 79.8 85 0.0029 35.3 25.9 303 504-855 117-433 (510)
55 2db0_A 253AA long hypothetical 76.8 11 0.00037 35.7 8.9 120 459-601 126-247 (253)
56 1xqr_A HSPBP1 protein; armadil 71.5 16 0.00055 38.0 10.1 139 452-602 94-240 (296)
57 3a6p_A Exportin-5; exportin-5, 70.4 35 0.0012 43.4 14.7 64 790-853 314-381 (1204)
58 3ul1_B Importin subunit alpha- 69.9 1.5E+02 0.005 33.3 24.8 262 9-313 59-345 (510)
59 3tpo_A Importin subunit alpha- 69.8 1.5E+02 0.0051 33.4 24.8 294 510-855 141-452 (529)
60 2of3_A ZYG-9; multifunctional 68.5 1.1E+02 0.0036 31.1 15.9 97 343-470 100-197 (266)
61 1xqr_A HSPBP1 protein; armadil 61.9 1E+02 0.0035 31.8 13.9 185 4-226 25-239 (296)
62 1oyz_A Hypothetical protein YI 54.6 1.8E+02 0.0061 29.2 16.6 146 415-598 38-186 (280)
63 2z6g_A B-catenin; FULL-length, 54.3 3.4E+02 0.012 32.3 26.0 249 16-313 158-428 (780)
64 4db6_A Armadillo repeat protei 51.4 1.6E+02 0.0056 27.8 17.5 137 9-158 13-167 (210)
65 3ltm_A Alpha-REP4; protein eng 49.6 1.8E+02 0.006 27.6 17.8 177 9-223 21-201 (211)
66 2iw3_A Elongation factor 3A; a 42.6 2.3E+02 0.0079 34.6 14.3 167 529-733 54-223 (986)
67 2of3_A ZYG-9; multifunctional 42.6 2.8E+02 0.0096 28.0 22.0 169 60-271 60-239 (266)
68 1vsy_4 Proteasome activator BL 40.6 3.3E+02 0.011 32.4 15.1 118 680-810 336-458 (799)
69 4ffb_C Protein STU2; tubulin f 36.7 1E+02 0.0035 31.2 9.0 66 789-855 150-215 (278)
70 4db8_A Armadillo-repeat protei 36.4 3.1E+02 0.01 26.6 16.5 133 12-157 58-208 (252)
71 2z6h_A Catenin beta-1, beta-ca 34.0 5.8E+02 0.02 29.2 33.8 258 39-351 13-284 (644)
72 2z6h_A Catenin beta-1, beta-ca 26.3 7.7E+02 0.026 28.1 21.1 216 9-268 58-292 (644)
73 3ltm_A Alpha-REP4; protein eng 25.5 2.1E+02 0.0071 27.1 8.6 122 11-160 84-205 (211)
74 3ltj_A Alpharep-4; protein eng 25.2 4.1E+02 0.014 24.6 16.6 175 9-221 16-194 (201)
75 3ltj_A Alpharep-4; protein eng 24.3 2.4E+02 0.0083 26.3 8.8 117 12-156 80-196 (201)
76 1jdh_A Beta-catenin; beta-cate 22.7 7.7E+02 0.026 26.9 18.1 220 9-270 61-297 (529)
77 3now_A UNC-45 protein, SD10334 20.6 1.1E+03 0.038 27.9 20.9 236 7-267 289-564 (810)
No 1
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.9e-86 Score=825.32 Aligned_cols=865 Identities=14% Similarity=0.154 Sum_probs=682.6
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHH
Q 002084 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (969)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~ 85 (969)
.+.++++|.++|+++++ .|++|++||++||++|++|.+|..+|..+ .++++|||||++|+++|+++|+.+|+++
T Consensus 15 v~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-----~~~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 67899999999987654 99999999999999999999999999764 3579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (969)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~ 157 (969)
+..||+.+++++.++..+ ++.|++|||.+++.++.+.+ .||+++++++..++++ +..++++|.+|+.|+
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~---~~~~~~~L~iL~~L~ 165 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS---VNVCENNMIVLKLLS 165 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC---HHHHHHHHHHHHHHH
Confidence 999999999999887543 57899999999999999984 6999999999999753 346789999999999
Q ss_pred hccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhh
Q 002084 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (969)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i 237 (969)
||+.+..+.+ ++..||..+++.|..+++.|++++..++.... +.++...+|+|+.+|+. |+|.+.+
T Consensus 166 EEV~~~~~~~--l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-------~~~l~~~~L~~l~s~l~-----WI~i~~i 231 (1023)
T 4hat_C 166 EEVFDFSAEQ--MTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-------SSSLIVATLESLLRYLH-----WIPYRYI 231 (1023)
T ss_dssp HHHHTSCTTT--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHH-----hCCHHHh
Confidence 9998643333 78889999999999999999999999987642 34678899999999998 7888888
Q ss_pred cccchHHHHH-hhcCCCCcHHHHHHHHHHHHhcC---C--ChhHH---HH------------hhhhhhHHhhhhhhhccC
Q 002084 238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRH---E--GLPQA---LL------------CRVPFLKELLLLPALTDG 296 (969)
Q Consensus 238 ~~~~ll~~~~-~~L~~~~~~~~a~~~l~ei~~~~---~--~~~~~---l~------------~~~~~l~~~~~~~~~~~~ 296 (969)
.++++++.+| +.|.+++++++|++|+++++++. + ++.+. ++ |....+++.|. ...++
T Consensus 232 ~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~--~~~~~ 309 (1023)
T 4hat_C 232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN 309 (1023)
T ss_dssp HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH--HTCTT
T ss_pred cchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh--ccccc
Confidence 8899999999 99999999999999999999843 2 13321 22 22233455543 23456
Q ss_pred chhHHhhHHHHHHHHhhhhhHHHHhcCh--h-HHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhh
Q 002084 297 DEKVIGGLACLMSEIGQAAPSLIVEASP--E-ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (969)
Q Consensus 297 d~d~~~~l~~l~~~~~e~~~~~l~~~~~--~-~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~ 373 (969)
|.+.++++|++|+++|++|...|.+++. . ....+++|+.|++++ |++++++||+|||.|++.+++- +
T Consensus 310 D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e--------~ 379 (1023)
T 4hat_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE--------P 379 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTS--------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhc--------h
Confidence 7889999999999999999998876522 2 234577999999997 8999999999999999987642 1
Q ss_pred hhhhhhHHHHHHHHHHHHHHccCCCCC-----CCCCC------CCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Q 002084 374 HVEDMFFSVFSALLDALLLRAQVDESS-----FNDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF 442 (969)
Q Consensus 374 ~~~~~~~~~~~~l~~~l~~k~~~p~~~-----~~~~~------~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~ 442 (969)
.....|+|+|.+|+.++++||+||++. ..++| +.|+.+.|+.|| |++.+++.+.|. .++..++.
T Consensus 380 ~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~-~~~~~~~~ 454 (1023)
T 4hat_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVI-DTEEIMIS 454 (1023)
T ss_dssp TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHH-HHHHHHHH
Confidence 256789999999999999999999842 12233 445667777777 899999998876 56666666
Q ss_pred hhhcC-CCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 002084 443 GSWGS-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS 521 (969)
Q Consensus 443 ~~~~~-~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~ 521 (969)
.+... .+++++|+.+||++||+|+|++++.++.....++.++..|..++++...+... ..++. |+|+++|+|++|++
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~-t~~~~lGry~~wl~ 532 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVAS-DIMYVVGQYPRFLK 532 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHH-HHHHHHHTCHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch-HHHHH-HHHHHHHHHHHHHh
Confidence 54321 12347899999999999999999875422122566666666676542221111 12444 55799999999999
Q ss_pred hChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCC------CccHHHHHHHHHHHHhcCCChhhHHHHHH
Q 002084 522 AFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEEVVG 593 (969)
Q Consensus 522 ~~p~~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~------~~~~~~l~~~~~~l~~~~l~~~~~~~l~e 593 (969)
.||++|+++++++++++++ |+++.+||.||++||++|+.++.. +++++.+.+.+.... ..++...+..+++
T Consensus 533 ~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l~~~~~~~lye 611 (1023)
T 4hat_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT-ADLQPQQVHTFYK 611 (1023)
T ss_dssp HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence 9999999999999999964 579999999999999999987742 235565555444433 3688999999999
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHH--HHHHHHHHHHHhhhhhcccccccCCCCC
Q 002084 594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT--QILSSATRGLYRMGTVFSHLPVPLPTNP 671 (969)
Q Consensus 594 ai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~L~~~~~~l~~L~~i~~~l~~~~~~~~ 671 (969)
|+|.+|+++|+++.+..+++.|+.|..+.|+++.+++ ..+|..+. ...+.....+++++++.+.++
T Consensus 612 ai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~-----~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg------- 679 (1023)
T 4hat_C 612 ACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQS-----TANPTLLLDSETVKIIANIIKTNVAVCTSMG------- 679 (1023)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHH-----HHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-------
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHH-----hcCchhhcCHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999887789999999999999999998753 12333221 112223344555555544444
Q ss_pred CCCchHHHHHHhHHHHHHHHHHhhhcc--------chHH-----HHHHHHHHHHHHHhh-----hhh------hHhhHHH
Q 002084 672 AGDDPIFALLRVFWPMLEKLFRSEHME--------NGNL-----STAACRALSLAIQSS-----GQH------FVTLLPQ 727 (969)
Q Consensus 672 ~~~~p~~~~~~~i~~~l~~il~~~~~~--------~~~v-----~e~~c~~l~~~~~~~-----~~~------~~p~l~~ 727 (969)
+++.+.++.+||.+..+.. .+.+ ++.+ ..+.||++|+.+-.+ +.. ...++|+
T Consensus 680 ---~~f~~~~~~i~~~~l~~y~-~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~ 755 (1023)
T 4hat_C 680 ---ADFYPQLGHIYYNMLQLYR-AVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEP 755 (1023)
T ss_dssp ---GGGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHH
Confidence 5577888888998887765 3421 1111 236788887775432 111 4567899
Q ss_pred HHHHHHHhhhhhc---CcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHH
Q 002084 728 VLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFAST 804 (969)
Q Consensus 728 l~~~l~~~~~~~~---~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~ 804 (969)
+++.++..|..+. ++|++|++.+++|+++|+ .+.+.+..+++.+.++| +.++++ ++.++||++.+||+|+.+
T Consensus 756 l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~--~~~~~~~~il~~vf~~T-l~mi~~--~~~~~Pe~r~~ff~ll~~ 830 (1023)
T 4hat_C 756 LLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMINK--DFTEYPEHRVEFYKLLKV 830 (1023)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHSS--CSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHH-HHHHhc--ccccChHHHHHHHHHHHH
Confidence 9999999998652 469999999999999997 57788999999999998 888874 899999999999999999
Q ss_pred HHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHH
Q 002084 805 FVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEG 884 (969)
Q Consensus 805 ~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 884 (969)
++++||..++..++..+..+++++++|++++||++..++++|+.++++..... ++ .+..++++++++..
T Consensus 831 ~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~----~~-------~~~~~~f~~~~~~~ 899 (1023)
T 4hat_C 831 INEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNYFFI 899 (1023)
T ss_dssp HHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH----CS-------SHHHHHHHHHHHHH
T ss_pred HHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHHHHH
Confidence 99999999999876789999999999999999999999999999999876642 11 26789999999999
Q ss_pred HHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhccccc---------ccccChHHHHHHHHHHHh-hhcc
Q 002084 885 LVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSG---------KAILSWESLQGWLHSAVS-LFLI 946 (969)
Q Consensus 885 Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~~~~~~~~~~~---------~~~~~~~~~~~Wl~~~l~-~~~~ 946 (969)
++..++..+++..++|++...+.+|+.|+.+...- .+.. ++..+...++.|+.+.|. ++|+
T Consensus 900 ~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~ 970 (1023)
T 4hat_C 900 FVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDN-KISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPH 970 (1023)
T ss_dssp HHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTT-CCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcC-CcccccCCccccCCCCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999653330 0110 112334578899988776 4444
No 2
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=4.3e-85 Score=806.14 Aligned_cols=875 Identities=13% Similarity=0.175 Sum_probs=680.1
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHH
Q 002084 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (969)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~ 85 (969)
.+.++++|.++|++ +++.|++|++||++||++|+||..|..+|..+ .++++|||||++|+++|+++|+.+|+++
T Consensus 27 v~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s-----~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 27 INLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS-----QNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---C-----CSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 67899999999965 68899999999999999999999999999764 3579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (969)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~ 157 (969)
+..||+.+++++.++..+ ++.+++|||.+++.++.+.+ .||+++++++..+++ ++..+.+.|.+|+.|+
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~ 177 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLS 177 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Confidence 999999999999886543 37888999999999999975 699999999999875 2456788999999999
Q ss_pred hccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhh
Q 002084 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (969)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i 237 (969)
||+.+.++.+ ++.+||.++++.|...++.|++++..++.... +.++...+|+|+.+|+. |++.+.+
T Consensus 178 EEV~d~~~~~--l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-------~~~lv~~~L~~L~~~~s-----WI~i~~i 243 (1073)
T 3gjx_A 178 EEVFDFSSGQ--ITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-------NAPLVHATLETLLRFLN-----WIPLGYI 243 (1073)
T ss_dssp HHHTTSHHHH--BCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHhccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CHHHHHHHHHHHHHHHH-----hcCHHHh
Confidence 9998764433 67889999999999999999999999887542 34577778888888877 6677788
Q ss_pred cccchHHHH-HhhcCCCCcHHHHHHHHHHHHhcC-CChh---HHHHhhhh-----------hhHHhhhhhhhccCchhHH
Q 002084 238 AAHPLLNFV-FNSLQVQSSFDVAIEVLVELVGRH-EGLP---QALLCRVP-----------FLKELLLLPALTDGDEKVI 301 (969)
Q Consensus 238 ~~~~ll~~~-~~~L~~~~~~~~a~~~l~ei~~~~-~~~~---~~l~~~~~-----------~l~~~~~~~~~~~~d~d~~ 301 (969)
.++++++.+ +..|.+++++++|++|+++++++. +++. ..++..++ ++.+.|. ...++|.+.+
T Consensus 244 ~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~--~~~~~d~e~~ 321 (1073)
T 3gjx_A 244 FETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYS--NGKDDEQNFI 321 (1073)
T ss_dssp HSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHH--TCCTTHHHHH
T ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHh--ccchhhHHHH
Confidence 889999988 799999999999999999999963 2232 22333332 2333332 1245677899
Q ss_pred hhHHHHHHHHhhhhhHHHHhcCh---hHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchh---h-------
Q 002084 302 GGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS---I------- 368 (969)
Q Consensus 302 ~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~---~------- 368 (969)
+++|++|+++|++|...|.++++ .....+++|+.|+++| |++|+++||+||+.|.+.++...+. .
T Consensus 322 ~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~--d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~ 399 (1073)
T 3gjx_A 322 QNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE--ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGS 399 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999999987643 3456788999999998 8999999999999999998732210 0
Q ss_pred -hhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHH---------HHHHHHHHHHHhcCcHHHHH
Q 002084 369 -AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM---------NLVELLVDICQLLRSATFIQ 438 (969)
Q Consensus 369 -~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~---------~~~d~l~~~~~ilg~~~~l~ 438 (969)
....+.....|+|+|.+|+.+++.||.+|++.... +.|+++-|++||+ .++|++.+++. ++.+.++.
T Consensus 400 ~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~--e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~-l~~~~~~~ 476 (1073)
T 3gjx_A 400 QHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVV--ENDQGEVVREFMKDTDSINLYKNMRETLVYLTH-LDYVDTEI 476 (1073)
T ss_dssp CCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEE--ECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHH-HCHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCcccccc--CcccchHHHHHHhhcchHHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 00123456779999999999999999999975431 1234444445544 44455544433 45566777
Q ss_pred HHHhhhhcC-CCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhH
Q 002084 439 KVFFGSWGS-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYS 517 (969)
Q Consensus 439 ~l~~~~~~~-~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys 517 (969)
.++..+... .++.++|+.+||+||++|+||+++.++.+...+|.+++.|..+|+++.++.. ++++++++|+++|+|+
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~--k~~vas~i~~vlgrY~ 554 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN--KAIIASNIMYIVGQYP 554 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHH--HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccch--hHHHHHHHHHHHhhhH
Confidence 777665421 2246789999999999999998887532212368888888888887754332 3456667789999999
Q ss_pred HHHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCCc---cHHHHHHHHHHHH--hcCCChhhHHH
Q 002084 518 KWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPS---NLEILMWIGEALE--KRHLPLEDEEE 590 (969)
Q Consensus 518 ~wl~~~p~~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~~~---~~~~l~~~~~~l~--~~~l~~~~~~~ 590 (969)
+|++.||+||.++++++++++++ ++++.+||.||.+||++|++++...+ ..|.+..+++.+. ...++.+....
T Consensus 555 ~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 555 RFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999985 67999999999999999999885421 1233344443332 36789999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCC
Q 002084 591 VVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT 669 (969)
Q Consensus 591 l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~ 669 (969)
+++|+|++|+++|++..+..+++.|+.|..+.|+++++++..+ +.-.++ ..+++|+.+++.... ...
T Consensus 635 lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~-----------~~i~~l~~il~~n~~-v~~ 702 (1073)
T 3gjx_A 635 FYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDP-----------ETVKQLGSILKTNVR-ACK 702 (1073)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCH-----------HHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccCh-----------HHHHHHHHHHhhhHH-HHh
Confidence 9999999999999987679999999999999999998754211 111121 124445555553221 111
Q ss_pred CCCCCchHHHHHHhHHHHHHHHHHhhhcc--------chH-----HHHHHHHHHHHHHHhh-----hhh------hHhhH
Q 002084 670 NPAGDDPIFALLRVFWPMLEKLFRSEHME--------NGN-----LSTAACRALSLAIQSS-----GQH------FVTLL 725 (969)
Q Consensus 670 ~~~~~~p~~~~~~~i~~~l~~il~~~~~~--------~~~-----v~e~~c~~l~~~~~~~-----~~~------~~p~l 725 (969)
+ ..+|+.+.+..+||-+..+.. .|.+ ++. ...+.||++|+.+-.+ +.. ...++
T Consensus 703 ~--~g~~f~~~~~~i~~~~l~~y~-~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i 779 (1073)
T 3gjx_A 703 A--VGHPFVIQLGRIYLDMLNVYK-CLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFV 779 (1073)
T ss_dssp H--HCGGGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTS
T ss_pred h--cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhH
Confidence 1 226788889999998777764 2321 111 3458899999776432 222 45778
Q ss_pred HHHHHHHHHhhhhh---cCcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHH
Q 002084 726 PQVLDCLSTNFVSF---QNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFA 802 (969)
Q Consensus 726 ~~l~~~l~~~~~~~---~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~ 802 (969)
|++++.++..|..+ .++|++|++.+++|+++|. .+.+.+..+++.+.++| +.++.. ++.++||++.+||+|+
T Consensus 780 ~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~--~~~~~~~~il~~vf~~T-l~mi~~--~f~~~Pe~r~~ff~ll 854 (1073)
T 3gjx_A 780 PPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG--HITAEIPQIFDAVFECT-LNMINK--DFEEYPEHRTNFFLLL 854 (1073)
T ss_dssp HHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGG--GTGGGHHHHHHHHHHHH-HHHHSS--CSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHH-HHHHhC--CcccCcHHHHHHHHHH
Confidence 99999999999864 2689999999999999998 56688889999999998 888874 8999999999999999
Q ss_pred HHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhcc
Q 002084 803 STFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSG 882 (969)
Q Consensus 803 ~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 882 (969)
.++.++||..++..|+..+..+++++++|+++.||++..++++++.++++..... .+..++++++++
T Consensus 855 ~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~-------------~~~~~~F~~~~~ 921 (1073)
T 3gjx_A 855 QAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE-------------EAAAQSFYQTYF 921 (1073)
T ss_dssp HHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcC-------------hHHHHHHHHHHH
Confidence 9999999999999877788999999999999999999999999999999875421 256899999999
Q ss_pred HHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhccccccc--cc---ChHHHHHHHHHHH-hhhcc
Q 002084 883 EGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKA--IL---SWESLQGWLHSAV-SLFLI 946 (969)
Q Consensus 883 ~~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~~~~~~~~~~~~~--~~---~~~~~~~Wl~~~l-~~~~~ 946 (969)
..++..++..+++..++|++...+.+|+.|..+...- .+..+. .. +...++.|+.+.| .++|+
T Consensus 922 ~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~-~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~ 990 (1073)
T 3gjx_A 922 CDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEG-KISTPLNPGNPVNNQMFIQDYVANLLKSAFPH 990 (1073)
T ss_dssp HHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTT-CCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcC-CccccccccCCCccHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999653320 011111 11 3446899998887 44454
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=3.9e-84 Score=823.48 Aligned_cols=867 Identities=16% Similarity=0.263 Sum_probs=670.4
Q ss_pred CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCC
Q 002084 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (969)
Q Consensus 1 ~~~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~ 80 (969)
|+..+.++|+++++++| ++|++.|++|++||++||++|++|.+|..||..+ .+.++|||||++|++||+++|+.
T Consensus 1 m~~~d~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~ 74 (971)
T 2x1g_F 1 MEPIDIARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLG-----KSQEVQFFGAITLHSKLMKHWHE 74 (971)
T ss_dssp ----------CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCTT-----SCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CChhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHccHhh
Confidence 54334778999999988 4688899999999999999999999999999763 35799999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc-cCCchHHHHHHHhhcccC----CCcchHHHHHHHhh
Q 002084 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLTV 155 (969)
Q Consensus 81 l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~-~W~~~i~~li~~l~~~~~----~~~~~~~lL~~L~~ 155 (969)
+|++++..+|+.+++++.+..++++.|++|+|.+++.++.+.. .||+++++++..++++.. ++...+.++++|+.
T Consensus 75 l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 75 VPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTA 154 (971)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 9999999999999999998777789999999999999999987 899999999999876210 12357799999999
Q ss_pred chhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccch
Q 002084 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (969)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~ 235 (969)
+|||+...+ +..+|..+++.+....+.|++++.+++....+++.......+...+++|+.+|+.++ ++|.+
T Consensus 155 l~EEi~~~~------~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~---~ip~~ 225 (971)
T 2x1g_F 155 IPEEAQVIH------TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI---GYTIE 225 (971)
T ss_dssp HHHHHHHCC------CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS---CCCGG
T ss_pred hHHHHhccC------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC---CcCcc
Confidence 999986321 345778888889999999999999888654321100001258899999999999974 56766
Q ss_pred hhcccchHHHHHhhc------------------CCCCcHHHHHHHHHHHHhcCC-----ChhHHHHhhhhhhHHhhhhhh
Q 002084 236 SLAAHPLLNFVFNSL------------------QVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPFLKELLLLPA 292 (969)
Q Consensus 236 ~i~~~~ll~~~~~~L------------------~~~~~~~~a~~~l~ei~~~~~-----~~~~~l~~~~~~l~~~~~~~~ 292 (969)
..+++++.+|. | .+++.+++|++|+.++++..+ ++...++|.++++.+.+. .+
T Consensus 226 --~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 301 (971)
T 2x1g_F 226 --GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEIT-KT 301 (971)
T ss_dssp --GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred --ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHH-HH
Confidence 46789999998 6 567889999999999998643 245567788777665543 24
Q ss_pred hccCch---hHHhhHHHHHHHHhhhhhHHHH----h----cChhHHHHHHHHHhcccCCC---CCchhhhhhHHHHHHHH
Q 002084 293 LTDGDE---KVIGGLACLMSEIGQAAPSLIV----E----ASPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLA 358 (969)
Q Consensus 293 ~~~~d~---d~~~~l~~l~~~~~e~~~~~l~----~----~~~~~~~ll~~lL~~~~~p~---~d~~v~~~~~~FW~~l~ 358 (969)
+.++|. +....+|++|+.+|+.+...+. + .++.+..+++.|+.++++|| .|++|+..+++||+.++
T Consensus 302 ~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~ 381 (971)
T 2x1g_F 302 EWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQ 381 (971)
T ss_dssp HSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHH
Confidence 455664 8899999999999999988776 3 23456789999999998854 26789999999999999
Q ss_pred HHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 002084 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQ 438 (969)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~ 438 (969)
+.+.+++.+. ..+.....++|+|.+++++++.|+.||+++..++|+.+|+++|.+||+.++|++.+++.++|. .++.
T Consensus 382 ~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~ 458 (971)
T 2x1g_F 382 DEVFAMSNDE--QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILE 458 (971)
T ss_dssp HHHHC---------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHH
T ss_pred HHHHhccccc--chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 8654333111 013456788999999999999999999876444577677889999999999999999999984 4444
Q ss_pred HHHhhh----hcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccC-chhhhhhHHHHHHHHHHHHH
Q 002084 439 KVFFGS----WGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSAS-RSEELKGFMHIVYRSLADVI 513 (969)
Q Consensus 439 ~l~~~~----~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~-~~~~~~~~~~v~~~t~~~li 513 (969)
.++..+ ......+.+|+.+||++|+++++++.+..+.. ..++.+++++..++.. ++ +.||.++ ++++
T Consensus 459 ~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~~l~~l~~~d~~------~~vr~~a-~~~l 530 (971)
T 2x1g_F 459 ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMRVLAEIPYEKLN------VKLLGTA-LETM 530 (971)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSC------HHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHHHHHhcCccccC------HHHHHHH-HHHH
Confidence 443322 11001236899999999999999999986443 2356777777667632 22 2367767 5999
Q ss_pred HhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHhcCCChhhHHHHH
Q 002084 514 GSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVV 592 (969)
Q Consensus 514 g~ys~wl~~~p~~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~ 592 (969)
|+|++|+..||+|+++++++++++|. |.++.+||.||.+||++|+..+.+ +++.+++.+ ..+.+..++.+++..++
T Consensus 531 ~~~~~~l~~~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p--~~~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 531 GSYCNWLMENPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKP--YADPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp HHTHHHHC----CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHH--HHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 99999999999999999999999994 889999999999999999998853 666666555 44455568899999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCC
Q 002084 593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPA 672 (969)
Q Consensus 593 eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~ 672 (969)
+++|.+++++|.++ ...++..++.|+++.++++.+.+.. ++.. .......+.+|+.+++.+....+...+
T Consensus 608 ~ai~~i~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~-----~~~~----~~~~~~~l~~L~~~~~~l~~~~~~~~~ 677 (971)
T 2x1g_F 608 FSIGKLMSLLRPEE-IPKYLDIIVSPCFEELQAICQADSK-----TPAA----RIRTIFRLNMISTLFSSLNTDVDEQAT 677 (971)
T ss_dssp HHHHHHHHTSCTTH-HHHHHHHHHHHHHHHHHHHHTC--------CHHH----HHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-----Chhh----HHHHHHHHHHHHHHHhhcCCCcCcccc
Confidence 99999999998544 6899999999999999998765320 1111 123567788888888887753221110
Q ss_pred ---CCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHHH
Q 002084 673 ---GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTA 749 (969)
Q Consensus 673 ---~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~ 749 (969)
..+|+.++.+++||++..++. .+..+.+++|++|++++++++.+|..+.|++|++++++...|... +++|+|+++
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~-~~~~~l~l~ 755 (971)
T 2x1g_F 678 DQPIVQPVLLVMQRTMPIFKRIAE-MWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR-CCAPTLEIS 755 (971)
T ss_dssp ------CCHHHHHTTHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC---CCHHHHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC-CchHHHHHH
Confidence 147788899999999999998 688889999999999999999999999999999999999999875 789999999
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcC--CCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccc-hHHHHH
Q 002084 750 SVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSS--YICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL-LEVSFQ 826 (969)
Q Consensus 750 ~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~--~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~-l~~i~~ 826 (969)
+.++..||.++.+.+.+.+++..++..+ +..+.+. ..++++||++++||+|+.+++++||..++++ +. ++.+++
T Consensus 756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s--~~~l~~i~~ 832 (971)
T 2x1g_F 756 KTAIVMFFKDEGCKPLMQQLLREFIQHS-FKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDK--TLAYDRLVF 832 (971)
T ss_dssp HHHHTTCCC-----HHHHHHHHHHHHHH-HHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCT--TSCHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHH-HHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCC--cccHHHHHH
Confidence 9999999997777888888888887776 6666642 2566799999999999999999999999986 67 899999
Q ss_pred HHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHH
Q 002084 827 KAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCA 906 (969)
Q Consensus 827 ~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~~~~~ 906 (969)
+++.+++.+|+++.+++++||+.+++.++. .+.+++++.++|+.|+..++.+++|+.|||.++.++
T Consensus 833 ~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~--------------~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a 898 (971)
T 2x1g_F 833 YAQRGMTLPESGAIRNSIQFLTHFVMQSRN--------------HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFA 898 (971)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhcCCc--------------hHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHH
Confidence 999999999999999999999999988431 256899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccccccccChHHHHHHHHHHHh
Q 002084 907 TILQQLAAICSISERTSGKAILSWESLQGWLHSAVS 942 (969)
Q Consensus 907 ~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~l~ 942 (969)
++|++|+ .+||..++.||.+++.
T Consensus 899 ~~l~~l~-------------~~~~~~~~~~l~~~l~ 921 (971)
T 2x1g_F 899 DILLAMN-------------RKYAAEMAVWMKSLMS 921 (971)
T ss_dssp HHHHHHH-------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-------------HHCcHHHHHHHHHHhc
Confidence 9999999 6899999999999996
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=2.4e-79 Score=780.04 Aligned_cols=859 Identities=20% Similarity=0.323 Sum_probs=689.6
Q ss_pred CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCC
Q 002084 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (969)
Q Consensus 1 ~~~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~ 80 (969)
|++.+.++|+++++++|.++|++.|++|++||++||++|++|.+|..||..+ .+.++|||||++|+++|+++|+.
T Consensus 18 m~~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 18 ALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPD-----KVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTT-----SCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCHhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHHHhCHHh
Confidence 4433577899999999988899999999999999999999999999999753 35799999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccC---CCcchHHHHHHHhh
Q 002084 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS---QDNGNMAVLEMLTV 155 (969)
Q Consensus 81 l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~---~~~~~~~lL~~L~~ 155 (969)
+|++++..||+.+++++.++.++++.|++|+|.+++.++.+.+ .||+++++++..+++..+ ++.....++.+|+.
T Consensus 93 l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 93 IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Confidence 9999999999999999998766789999999999999999864 699999999998865111 22357899999999
Q ss_pred chhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccch
Q 002084 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (969)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~ 235 (969)
++||+.+.+ .+.++|..+++.+....+.|+.++.+++....+ +..+...+++|+.+|+..+. +.
T Consensus 173 l~ee~~~~~-----~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~------~~~~~~~~l~~l~~wi~~~~----~~- 236 (963)
T 2x19_B 173 LPEEFQTSR-----LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS------PSCVRQKVLKCFSSWVQLEV----PL- 236 (963)
T ss_dssp HHHHHTTCC-----C---------CCSGGGHHHHHHHHHHHHSCTTC------CHHHHHHHHHHHHHHHTSSC----CG-
T ss_pred CHHHHhccc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHHHHcCCC----Cc-
Confidence 999997542 245677777778888999999999988865321 22488899999999998542 22
Q ss_pred hhcccchHHHHHhhcCCCCcHHHHHHHHHHHHhcCC--C---hhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHH
Q 002084 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHE--G---LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSE 310 (969)
Q Consensus 236 ~i~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~--~---~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~ 310 (969)
...+++++.+|+++.+++.++.|++|+.++++.+. + ....+++.++.+.+.+. .+..++|.+..+++|++|++
T Consensus 237 -~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~~~ 314 (963)
T 2x19_B 237 -QDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLR-QAVQNGDMETSHGICRIAVA 314 (963)
T ss_dssp -GGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHH-HHHHCCCHHHHHHHHHHHHH
Confidence 23578999999999999999999999999998653 1 23445666666544443 24456788899999999999
Q ss_pred HhhhhhHHHHhc---ChhHHHHHHHHHhcccCCC---CCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHH
Q 002084 311 IGQAAPSLIVEA---SPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFS 384 (969)
Q Consensus 311 ~~e~~~~~l~~~---~~~~~~ll~~lL~~~~~p~---~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (969)
+++.+...+.++ ++.+..++++|+.++.+|+ .|++++..+++||+.+.+.+..++... .+.....++|++.
T Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~---~~~~~~~~~~~l~ 391 (963)
T 2x19_B 315 LGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK---QAVYQQVYRPVYF 391 (963)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH---HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHH
Confidence 999999888753 3566789999999999864 256789999999999999765443211 2356678899999
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhh---hcCCCCCCChhHhHHHH
Q 002084 385 ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS---WGSANVPIPWKEVETKL 461 (969)
Q Consensus 385 ~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~---~~~~~~~~~W~~~Ea~L 461 (969)
+++.+++.|+.||+++..++|+.|++++|.+||++++|++.+++.++|.+ ++..++..+ .+....+.+|+..||++
T Consensus 392 ~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal 470 (963)
T 2x19_B 392 QLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALL 470 (963)
T ss_dssp HHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 99999999999988742223555666789999999999999999998853 344433322 11111346899999999
Q ss_pred HHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccC
Q 002084 462 FALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA 541 (969)
Q Consensus 462 f~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~ 541 (969)
|+++++++.+.+++.. .++.+++.+..+++ ++ +.+|.++ ++++|+|++|+..||+++++++++++.+|++|
T Consensus 471 ~al~~i~~~~~~~~~~-~l~~l~~~l~~l~~-~~------~~vr~~~-~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~ 541 (963)
T 2x19_B 471 YGFQSIAETIDVNYSD-VVPGLIGLIPRISI-SN------VQLADTV-MFTIGALSEWLADHPVMINSVLPLVLHALGNP 541 (963)
T ss_dssp HHHHHHTTSCCSSCCS-HHHHHHHHGGGSCC-CS------HHHHHHH-HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCG
T ss_pred HHHHHHHhhcCchhhH-HHHHHHHHHHhCCC-Cc------HHHHHHH-HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCc
Confidence 9999999998764431 13445554444443 11 2367766 69999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Q 002084 542 VSSNACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSY 620 (969)
Q Consensus 542 ~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~ 620 (969)
.++.+|+.||.+||++|+..+.+ +++.+++.. ..+.+..++.+.+..+++++|.+++++| .+....++..++.|+.
T Consensus 542 ~V~~~A~~al~~l~~~~~~~l~p--~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~ 618 (963)
T 2x19_B 542 ELSVSSVSTLKKICRECKYDLPP--YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYI 618 (963)
T ss_dssp GGHHHHHHHHHHHHHHTGGGCTT--THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence 99999999999999999998863 666666554 4444456788999999999999999998 3446899999999999
Q ss_pred HHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCC------------CCCCchHHHHHHhHHHHH
Q 002084 621 EAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN------------PAGDDPIFALLRVFWPML 688 (969)
Q Consensus 621 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~------------~~~~~p~~~~~~~i~~~l 688 (969)
+.|+++.++.. ++... ......+++|+.+++.+....... ....+|+..+.+++||++
T Consensus 619 ~~l~~~~~~~~------~~~~~----~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 619 QQLEKLAEEIP------NPSNK----LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp HHHHHHHSSCS------CHHHH----HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC------CHHHH----HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 99998865321 22221 123466888888888876432110 013578888999999999
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHHhcCCCCcchhHHH
Q 002084 689 EKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVT 768 (969)
Q Consensus 689 ~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g~~~~~~~~~~~ 768 (969)
..+++ .|..+.++.|.+|+++++++..+|..+.|++|++++.+...|... +.++++++++.++..||.++.+.+.+.+
T Consensus 689 ~~~l~-~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~l~l~~~li~~f~~~~~~~~~~~~ 766 (963)
T 2x19_B 689 QKVLS-KWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI-PQASALDLTRQLVHIFAHEPAHFPPIEA 766 (963)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTCTTTCHHHHH
T ss_pred HHHHH-hccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 99998 698899999999999999999999999999999999999999875 7899999999999999987667778888
Q ss_pred HHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccc-hHHHHHHHHHhhccCchhHHHHHHHHH
Q 002084 769 TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL-LEVSFQKAAICCTAMHRGAALAAMSYL 847 (969)
Q Consensus 769 l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~-l~~i~~~~l~~l~~~e~~~~~a~~~Fl 847 (969)
+++.+..++ ++.+.. ++.++||++++||+|+.+++++||..++++ +. ++.++++++.+++.+|+++.+++++||
T Consensus 767 ~l~~~~~~~-l~~~~~--~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~--~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l 841 (963)
T 2x19_B 767 LFLLVTSVT-LTLFQQ--GPRDHPDIVDSFMQLLAQALKRKPDLFLCE--RLDVKAVFQCAVLALKFPEAPTVKASCGFF 841 (963)
T ss_dssp HHHHHHHHH-HHHHHH--CTTTCHHHHHHHHHHHHHHHHHCGGGGGCT--TSCHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhh--CcccCchHHHHHHHHHHHHHHhCcHHHcCC--cccHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 888777776 666653 567899999999999999999999998864 45 999999999999999999999999999
Q ss_pred HHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccccccc
Q 002084 848 SCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAI 927 (969)
Q Consensus 848 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~~~~~~~~~~~~~~ 927 (969)
.++++..+. ...+++++.++|+.|+..++.+++|..||+.++.++++|+.|+ .
T Consensus 842 ~~l~~~~~~--------------~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~-------------~ 894 (963)
T 2x19_B 842 TELLPRCGE--------------VESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALN-------------K 894 (963)
T ss_dssp HHHGGGTTS--------------SCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHH-------------H
T ss_pred HHHHhcCCC--------------hHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHH-------------H
Confidence 999976431 1357888999999999999999999999999999999999998 5
Q ss_pred cChHHHHHHHHHHHh
Q 002084 928 LSWESLQGWLHSAVS 942 (969)
Q Consensus 928 ~~~~~~~~Wl~~~l~ 942 (969)
++|..++.|+.+++.
T Consensus 895 ~~~~~~~~~l~~~l~ 909 (963)
T 2x19_B 895 HCFSLLSMWIKEALQ 909 (963)
T ss_dssp HSHHHHHHHHHHHTC
T ss_pred HChHHHHHHHHHHhc
Confidence 789999999999985
No 5
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.3e-79 Score=764.71 Aligned_cols=851 Identities=12% Similarity=0.124 Sum_probs=630.6
Q ss_pred HHHHHHHHHH-hccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChH
Q 002084 6 QIKVAQAVHV-LNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (969)
Q Consensus 6 ~~~v~~ai~~-ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~ 84 (969)
.++|.+||.. +|.++|++.|++|++||++||++|+||++|..+|..+. ..+.++|||||+||++||+ .+|++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~---~~~~~vr~fa~~~L~~~I~----~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKT---KYKPSTRLICLQTLSEKVR----EWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTT---TSCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHH----hCChh
Confidence 6789999965 55456999999999999999999999999999997743 1258999999999999999 79999
Q ss_pred ----HHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCC-cchHHHHHHHhh
Q 002084 85 ----AKDALLNALLVAAKRFS--SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQD-NGNMAVLEMLTV 155 (969)
Q Consensus 85 ----~~~~Lr~~Ll~~l~~~~--~~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~-~~~~~lL~~L~~ 155 (969)
++..||+.+++++.+.. .++++|++|||.+++.++++.+ .||+++.+++..+++++ . .....+|.+|..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~--~~~~~~~~LriL~~ 155 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASS--QSEFSNFYLKVLLS 155 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHC--CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCC--hhHHHHHHHHHHHH
Confidence 99999999999999864 4689999999999999999985 79999999999998642 2 223445555555
Q ss_pred chhccccccccccCCCHHHHHHHHHHHHhh-----hhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccc
Q 002084 156 LPEEVIDSQASDCNISSAHRSQYGQELLSH-----TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (969)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~-----~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~ 230 (969)
|+||+.+.+..+......|+.++++.+..+ .+.+++++.++..+ .+..+...+|+|+.+|+.
T Consensus 156 i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~L~~l~s~i~----- 222 (980)
T 3ibv_A 156 IGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLCLQVYAQWVS----- 222 (980)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTT-----
T ss_pred hHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHh-----
Confidence 559998653111111124566777777775 55555555554332 234688999999999999
Q ss_pred cccchhhcccchHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChhH--HHHhhhhhhHHhhhhhhhc-cCchhHHhhHHHH
Q 002084 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPFLKELLLLPALT-DGDEKVIGGLACL 307 (969)
Q Consensus 231 ~~~~~~i~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~--~l~~~~~~l~~~~~~~~~~-~~d~d~~~~l~~l 307 (969)
|+|.+.+.++++++.+|+.|.+++++++|++|++++++++++-.. .++.. +++.+.+. .... ++|.|..+++|++
T Consensus 223 wi~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~-l~L~~~~~-~l~~~~~D~d~~~~la~L 300 (980)
T 3ibv_A 223 WININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNI-LNLNLFFS-KSQEQSTDPNFDEHVAKL 300 (980)
T ss_dssp TSCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHC-C-----CCHHHHHHHHHH
T ss_pred hcCHHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHH-HhHHHHHH-HHhcccccHHHHHHHHHH
Confidence 788888888999999999999999999999999999999875322 22222 35566554 1222 6889999999999
Q ss_pred HHHHhhhhhHHHHhcC------------hhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhh
Q 002084 308 MSEIGQAAPSLIVEAS------------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHV 375 (969)
Q Consensus 308 ~~~~~e~~~~~l~~~~------------~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~ 375 (969)
++++|+.+... .+.+ +.+..+++++|.|++|| +++|+..+++||+.+.+.+...+. ....
T Consensus 301 ~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~-----~~~~ 372 (980)
T 3ibv_A 301 INAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKESS-----SKEL 372 (980)
T ss_dssp HHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTT-----SCCC
T ss_pred HHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhccc-----cccc
Confidence 99999999888 6554 44568999999999998 689999999999998876432111 1224
Q ss_pred hhhhHHHHHHHHHHHHHHccCCCCCCC-CCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhh----hcC--C
Q 002084 376 EDMFFSVFSALLDALLLRAQVDESSFN-DDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS----WGS--A 448 (969)
Q Consensus 376 ~~~~~~~~~~l~~~l~~k~~~p~~~~~-~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~----~~~--~ 448 (969)
.+.++|+|.+|++++++||+||++... ++++.||+++|.+||++++ +++|++.++|++.++.++++.+ .+. .
T Consensus 373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~ 451 (980)
T 3ibv_A 373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL 451 (980)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999987433 2234577889999999999 9999999999998887444332 111 1
Q ss_pred CCCCChhHhHHHHHHHHhhhhccccCC-----cccchhHHHHHHHHhcc-----CchhhhhhHHHHHHHHHHHHHHhhHH
Q 002084 449 NVPIPWKEVETKLFALNVVSEVVLQEG-----QAFDFSVIMQLVAVLSA-----SRSEELKGFMHIVYRSLADVIGSYSK 518 (969)
Q Consensus 449 ~~~~~W~~~Ea~Lf~l~~iae~~~~~~-----~~~~l~~i~~ll~~l~~-----~~~~~~~~~~~v~~~t~~~lig~ys~ 518 (969)
.++.+|+++||+||+++++||++..+. ....+|.+++++..+.+ .++ +.||+++ ++++|||++
T Consensus 452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h------p~V~~~~-~~~l~rys~ 524 (980)
T 3ibv_A 452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH------PLVQLLY-MEILVRYAS 524 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC------HHHHHHH-HHHHHHTGG
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC------HHHHHHH-HHHHHHHHH
Confidence 123579999999999999999987421 11235788888777632 333 2378877 599999999
Q ss_pred HHHhChhchHHHHHHHHH--hcccC--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh-cCC----------
Q 002084 519 WISAFQTNARPLLLFLAA--GISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK-RHL---------- 583 (969)
Q Consensus 519 wl~~~p~~L~~~l~~l~~--~l~~~--~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~-~~l---------- 583 (969)
||..||++|+++|+++++ |++++ +++.+||++|.++|++|+++|.+ +.+.+++.+..+.. ...
T Consensus 525 ~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~--~~~~il~~l~~lL~~~~~~~~~~~~~~~ 602 (980)
T 3ibv_A 525 FFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN--YTESSLAMLGDLLNISVSPVTDMDAPVP 602 (980)
T ss_dssp GGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS--SHHHHHHHTTGGGCCCCCCCCC--CSSC
T ss_pred HHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHhhcCcCCCCCccccccc
Confidence 999999999999999999 99875 49999999999999999999863 66655555443321 111
Q ss_pred ---------ChhhHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHH
Q 002084 584 ---------PLEDEEEVVGAISLILGSVS-NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGL 653 (969)
Q Consensus 584 ---------~~~~~~~l~eai~~ii~~lp-~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 653 (969)
..+++..++||+|.++++.+ +.+.+..+++.++.|++++++++++.....+ .... .+ ...+
T Consensus 603 ~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~-----~~~~-~i---~~~i 673 (980)
T 3ibv_A 603 TLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL-----ENII-SV---YCSL 673 (980)
T ss_dssp CHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-------CHHH-HH---HHHH
T ss_pred chhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc-----cHHH-HH---HHHH
Confidence 12468999999999998864 2344689999999999999999987653211 1111 12 2334
Q ss_pred HhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHH
Q 002084 654 YRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLS 733 (969)
Q Consensus 654 ~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~ 733 (969)
..++++.+++... ....+|+..++.++|+++..+++ +|+++..|.|++|++++++++++|.++.|++|++++.++
T Consensus 674 ~al~~lakgf~~~----~~~~~p~~~~f~~~~~~il~~l~-~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 674 MAIGNFAKGFPAR----GSEEVAWLASFNKASDEIFLILD-RMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHTSCSC----C-CCCSHHHHHHHHHHHHHHHHH-HSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred HHHHHHhccCCcc----cCCCCcHHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence 4444444444321 12346788899999999999999 799999999999999999999999999999999999999
Q ss_pred HhhhhhcCcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCC----CCCCCCcHHHHHHHHHHHHHHh-
Q 002084 734 TNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSY----ICDQEPDLVEAYTNFASTFVRT- 808 (969)
Q Consensus 734 ~~~~~~~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~----~~~~~pDl~~~~f~l~~~~l~~- 808 (969)
..|... .+++||++++++|.+||++ +.+.+.+++..+.+++ +..+.+.. .+++..|+.++||.|+..++.+
T Consensus 749 ~~~~~~-e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~~i-f~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~ 824 (980)
T 3ibv_A 749 NSIDMN-ELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLMRI-FSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKG 824 (980)
T ss_dssp HHCCTT-THHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHHHH-HHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888865 8999999999999999985 8889999999998887 77776521 1234588999999999999996
Q ss_pred hhHHHHhcc-ccchHHHHHHHHH-hhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHH
Q 002084 809 SRKEVLAAS-GALLEVSFQKAAI-CCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLV 886 (969)
Q Consensus 809 ~p~~ll~~~-~~~l~~i~~~~l~-~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv 886 (969)
.+..++... .+.++.++...+. +.+.+|+.+.|+++.|++++++.-++. +. -.-..+++-+ ++
T Consensus 825 ~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~-----~~------~~gf~~f~~~----~~ 889 (980)
T 3ibv_A 825 FGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGK-----DG------IAGFENFTLS----LT 889 (980)
T ss_dssp CTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC------------------CCHHHHHHH----HH
T ss_pred chhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCC-----Cc------chHHHHHHHH----HH
Confidence 467666532 3567776665553 345789999999999999999764321 10 0113333322 22
Q ss_pred HHHHHH-------hcCCCcccchhhHHHHHHHHHHHhhhhcccccccccChHHHHHHHHHH-Hhhh
Q 002084 887 SNVVYA-------LLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSA-VSLF 944 (969)
Q Consensus 887 ~~ll~~-------~~g~~~rS~~~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~-l~~~ 944 (969)
..++.. +.++..|-.+...+.+++.+. .|...++-.+|.+. ++++
T Consensus 890 ~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~-------------~~~g~~~~~~l~~~~lp~~ 942 (980)
T 3ibv_A 890 PLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIIL-------------EKLGDIYKSYLVTVYFPTV 942 (980)
T ss_dssp HHHHHGGGC----------CHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHH-------------HhcCHHHHHHHHHhcCCcC
Confidence 233322 233445555667777777777 34556778888553 5554
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=4.6e-69 Score=686.98 Aligned_cols=833 Identities=14% Similarity=0.157 Sum_probs=623.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHH
Q 002084 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (969)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~ 85 (969)
.+++.+++.++|++ +++.|++|++||++||++|++|.+|..+|..+ .+.++|||||++|+++|+++|..+|+++
T Consensus 15 ~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s-----~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 15 IALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHC-----SCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCchHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 67899999999965 56789999999999999999999999999764 3579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (969)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~ 157 (969)
+..||+.+++++.+...+ ++.|++|+|.+++.++.+.. .||+++++++..+++ ++...+..+.+|+.++
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---ChHHHHHHHHHHHHHH
Confidence 999999999999876533 37899999999999999954 699999999999863 2345678999999999
Q ss_pred hccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhh
Q 002084 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (969)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i 237 (969)
||+.+.++.+ ++..+|.++++.+....+.|+.++.+++... .+..++..+|+|+.+|+. |++.+.+
T Consensus 166 eev~~~~~~~--~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-------~~~~~~~~aL~~l~~~l~-----wi~~~~~ 231 (1049)
T 3m1i_C 166 EEVFDFSAEQ--MTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-------SSSSLIVATLESLLRYLH-----WIPYRYI 231 (1049)
T ss_dssp HHHHTSCTTT--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHHhcchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHh-----hCCHHHH
Confidence 9997543222 5677888888888889999999999888753 234688999999999988 5676666
Q ss_pred cccchHHHHH-hhcCCCCcHHHHHHHHHHHHhcCC-C----hhH---HHHhhhhh------------hHHhhhhhhhccC
Q 002084 238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE-G----LPQ---ALLCRVPF------------LKELLLLPALTDG 296 (969)
Q Consensus 238 ~~~~ll~~~~-~~L~~~~~~~~a~~~l~ei~~~~~-~----~~~---~l~~~~~~------------l~~~~~~~~~~~~ 296 (969)
..+++++.++ ..+.+++++++|++|++++++... + +.. .+++.++. +...|. ...++
T Consensus 232 ~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~--~~~~~ 309 (1049)
T 3m1i_C 232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN 309 (1049)
T ss_dssp HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH--HTCTT
T ss_pred hhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc--cCCcc
Confidence 6788999999 566788999999999999998742 1 121 23333333 222222 12456
Q ss_pred chhHHhhHHHHHHHHhhhhhHHHHhcC---hhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhh
Q 002084 297 DEKVIGGLACLMSEIGQAAPSLIVEAS---PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (969)
Q Consensus 297 d~d~~~~l~~l~~~~~e~~~~~l~~~~---~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~ 373 (969)
|.+..+++|++|+++++.+...+.+.+ +....++++++.++.++ |.+++..+++||+.++++++. .+
T Consensus 310 d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~--------~~ 379 (1049)
T 3m1i_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFY--------EP 379 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHH--------ST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHh--------ch
Confidence 777889999999999999988887532 23457899999999997 789999999999999997532 12
Q ss_pred hhhhhhHHHHHHHHHHHHHHccCCCCCCC---CCCC----CCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhc
Q 002084 374 HVEDMFFSVFSALLDALLLRAQVDESSFN---DDGM----VDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWG 446 (969)
Q Consensus 374 ~~~~~~~~~~~~l~~~l~~k~~~p~~~~~---~~~~----~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~ 446 (969)
.....+++++.+++.+++.||.||++... ++++ ..+++|-..+|+.++|++..++.+.|. .++..+...+..
T Consensus 380 ~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~-~~l~~v~~~l~~ 458 (1049)
T 3m1i_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMISKLAR 458 (1049)
T ss_dssp TCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHH
Confidence 35578899999999999999999876431 1110 111122235688899999999876554 455554443321
Q ss_pred C-CCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh
Q 002084 447 S-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT 525 (969)
Q Consensus 447 ~-~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~ 525 (969)
. .+++.+|+.+||++|+++++++.+..+.....++.+++.+..+++....+.. ..++..++++++|+|++|+..||+
T Consensus 459 ~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~--~~~v~~~~~~~lgry~~~~~~~~~ 536 (1049)
T 3m1i_C 459 QIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN--KAVVASDIMYVVGQYPRFLKAHWN 536 (1049)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH--HHHHHHHHHHHHHHCHHHHHHCHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc--hHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1 1235789999999999999999876432211146777777777754221110 113443457999999999999999
Q ss_pred chHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCC------CccHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 002084 526 NARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597 (969)
Q Consensus 526 ~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~------~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ 597 (969)
+|++++++++.+|++ +.++.+||.||.+||++|++.+.. .++++.+++.+..+.. .++.++...+++|+|.
T Consensus 537 ~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~-~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA-DLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 999999999999987 469999999999999999987630 0256655554444332 4788889999999999
Q ss_pred HhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCC-------
Q 002084 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT------- 669 (969)
Q Consensus 598 ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~------- 669 (969)
++++.|+.+....++..++.|++++|++++.....+ +...+++.. ......+.+++.+.+.++.....
T Consensus 616 ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~ 691 (1049)
T 3m1i_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETV----KIIANIIKTNVAVCTSMGADFYPQLGHIYY 691 (1049)
T ss_dssp HHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHH----HHHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999655578999999999999999987653211 111122111 11123344444443333321100
Q ss_pred ---------------------CCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHH
Q 002084 670 ---------------------NPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQV 728 (969)
Q Consensus 670 ---------------------~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l 728 (969)
.....+|....++.+||.+..++. .|..+.++ ++..+.|++|++
T Consensus 692 ~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~-~~~~~~~~--------------l~~~~~~~~~~~ 756 (1049)
T 3m1i_C 692 NMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVE-TYISKARN--------------LDDVVKVLVEPL 756 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHH-HHHHHCSC--------------HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHH-HHHHhCCC--------------HHHHHHHHHHHH
Confidence 000123333334444444444433 23322211 233356888999
Q ss_pred HHHHHHhhhhhcCccc-----HHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHH
Q 002084 729 LDCLSTNFVSFQNHEC-----YIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFAS 803 (969)
Q Consensus 729 ~~~l~~~~~~~~~~~~-----~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~ 803 (969)
++.+...|.+ ++++ ++++++.++..+|+ .+.+.+..++..+.+++ +..+. .+++++||++++||.|+.
T Consensus 757 l~~ll~~~~~--~~~~~~~~~~l~l~~~ii~~~~~--~~~~~l~~i~~~l~~~~-~~~i~--~~~~~~pd~~~~~f~ll~ 829 (1049)
T 3m1i_C 757 LNAVLEDYMN--NVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMIN--KDFTEYPEHRVEFYKLLK 829 (1049)
T ss_dssp HHHHHHHHHH--SCGGGCCTHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHS--SCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCcccccHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHH-HHHHh--cchhhCHHHHHHHHHHHH
Confidence 9999988874 3444 99999999999995 45677888888888876 77665 367889999999999999
Q ss_pred HHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccH
Q 002084 804 TFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGE 883 (969)
Q Consensus 804 ~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 883 (969)
+++++||..+++.++..+..++++++++++++|+++.+++++||.+++++.+.. .+ .+..+++++++|.
T Consensus 830 ~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~----~~-------~~~~~~f~~~~~~ 898 (1049)
T 3m1i_C 830 VINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNYFF 898 (1049)
T ss_dssp HHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHS----CS-------CHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHHHH
Confidence 999999999997443558899999999999999999999999999999987641 11 1457888999999
Q ss_pred HHHHHHHHHhcCCCcccchhhHHHHHHHHHH
Q 002084 884 GLVSNVVYALLGVSAMSRVHKCATILQQLAA 914 (969)
Q Consensus 884 ~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~ 914 (969)
.|+..++.+++|..+||+++.++++|++|+.
T Consensus 899 ~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 899 IFVSETFFVLTDSDHKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp HHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999984
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=4.4e-54 Score=549.69 Aligned_cols=778 Identities=15% Similarity=0.127 Sum_probs=528.1
Q ss_pred HHHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCCh
Q 002084 5 LQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (969)
Q Consensus 5 ~~~~v~~ai~~ly~~-~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~ 83 (969)
..++|++++..+|++ +|++.|++|+++|++||++|++|..+..+|... +.+.++||||+++|+++|+++|..+|+
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~----s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEK----TQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTST----TSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 345688999999975 578889999999999999999999999888622 346899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084 84 AAKDALLNALLVAAKRFSS----GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (969)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~----~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~ 157 (969)
+++..||+.+++++.+... .++.|++|+|.+++.++.+.. .||++++++++.+++ ++...+..|.+|..|+
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ---GETQTELVMFILLRLA 161 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence 9999999999999987532 568999999999999999975 699999999998875 2345788999999999
Q ss_pred hccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccC---------CCCC--cchhhhHHHHHHHHHHHHHc
Q 002084 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFD---------GGVP--VQLHDRNRKILRCLLSWVRA 226 (969)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~---------~~~~--~~~~~~~~~~l~cl~sWi~~ 226 (969)
||+.+.+. +...+|..+++.+..+.+.|+.++..++....+ .+.. .++..+...+|+|+.+|+.
T Consensus 162 Eev~~~~~----~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~- 236 (1204)
T 3a6p_A 162 EDVVTFQT----LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID- 236 (1204)
T ss_dssp HHHHTSCC----SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh-
Confidence 99876532 456788888889998999999988877654200 0000 0123578899999999988
Q ss_pred cccccccchhhccc--chHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChhH--HHHhhhhh--hHHhhhhh------hhc
Q 002084 227 GCFTEISQGSLAAH--PLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPF--LKELLLLP------ALT 294 (969)
Q Consensus 227 ~~~~~~~~~~i~~~--~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~--~l~~~~~~--l~~~~~~~------~~~ 294 (969)
|++.+.+..+ .+++.++..+.+++++.+|++|++++++++++... .++..+.. +...|... .+.
T Consensus 237 ----Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~ 312 (1204)
T 3a6p_A 237 ----WVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLV 312 (1204)
T ss_dssp ----TSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCC
T ss_pred ----ccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCc
Confidence 6677665443 49999999999999999999999999998764111 12221100 12222210 013
Q ss_pred cCchhHHhhHHHHHHHHhhhhhHHHHh-----cChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhh
Q 002084 295 DGDEKVIGGLACLMSEIGQAAPSLIVE-----ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA 369 (969)
Q Consensus 295 ~~d~d~~~~l~~l~~~~~e~~~~~l~~-----~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~ 369 (969)
++|.+.++.+|++++++|+.+...+.+ ..+.+..++++|+.|+.|| +.+|+..+++||+.+.+... .
T Consensus 313 e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll~~~~-~----- 384 (1204)
T 3a6p_A 313 EKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALFRHEI-L----- 384 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHSCTT-T-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc--cHHhHHHHHHHHHHHHhccc-c-----
Confidence 446788999999999999987766653 3456789999999999998 68899999999998876531 1
Q ss_pred hhhhhhhhhhHHHHHHHHHHH---HHHccCCCCCCC-------C--CCCCCCCchHHHHHHHHHHHHHHHHHhcCcH---
Q 002084 370 KNKKHVEDMFFSVFSALLDAL---LLRAQVDESSFN-------D--DGMVDLPDGLVQFRMNLVELLVDICQLLRSA--- 434 (969)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~l---~~k~~~p~~~~~-------~--~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~--- 434 (969)
...+.+.+++.+|++++ ++|++||++... + ++++|..++|.+||++++|++++++.+.+..
T Consensus 385 ----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~ 460 (1204)
T 3a6p_A 385 ----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQ 460 (1204)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 11245889999999999 999999986531 1 1111222578999999999999999886432
Q ss_pred HHHHHHHhhhhc---C-----------------CCCCCChhHhHHHHHHHHhhhhcccc--CCcccc---hhHHHHHHHH
Q 002084 435 TFIQKVFFGSWG---S-----------------ANVPIPWKEVETKLFALNVVSEVVLQ--EGQAFD---FSVIMQLVAV 489 (969)
Q Consensus 435 ~~l~~l~~~~~~---~-----------------~~~~~~W~~~Ea~Lf~l~~iae~~~~--~~~~~~---l~~i~~ll~~ 489 (969)
.+...+...+.. . ...+..|...||..+.+.++++.+.. +.+... ++.+++.+..
T Consensus 461 ~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~ 540 (1204)
T 3a6p_A 461 MAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN 540 (1204)
T ss_dssp HHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh
Confidence 122333222221 0 01134699999999999999887731 111110 2334444333
Q ss_pred h-ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhccc--------------CchhHHHHHHHHHH
Q 002084 490 L-SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--------------AVSSNACASALRKI 554 (969)
Q Consensus 490 l-~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~--------------~~~~~~Aa~al~~l 554 (969)
+ +++|. ++++. +.++|+|++|+..||++|+++|++++.++.+ .+++.+|+.+|++|
T Consensus 541 ~~~~~p~--------l~~~~-i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 541 FDTKDPL--------ILSCV-LTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp CCCSCHH--------HHHHH-HHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCChH--------HHHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 3 23443 56666 5999999999999999999999999999865 14889999999999
Q ss_pred HHHhhcccCCCccHHHHHHHHHHH-HhcC-CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHh-----hh
Q 002084 555 CEDASALIDEPSNLEILMWIGEAL-EKRH-LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGK-----LI 627 (969)
Q Consensus 555 c~~c~~~l~~~~~~~~l~~~~~~l-~~~~-l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~-----~~ 627 (969)
|++|+..|.+ +++.+.+.+..+ .+++ ++..++..+++|++.+...+++++....+++.++.|++++|.+ .+
T Consensus 612 ~~~~~~~L~p--~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~ 689 (1204)
T 3a6p_A 612 CRDYPQLVLP--NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVL 689 (1204)
T ss_dssp HHHCHHHHGG--GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhHHHHH--HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHHhh
Confidence 9999998864 787777766554 4566 8999999999999999666677777788899999999999885 22
Q ss_pred cccC---------CC---CCCCCchhH-----HHHHHHHHHHHHhhh---------hh-cccccccCCCCCCCCchHHHH
Q 002084 628 DGDN---------NH---SLIHNPATY-----TQILSSATRGLYRMG---------TV-FSHLPVPLPTNPAGDDPIFAL 680 (969)
Q Consensus 628 ~~~~---------~~---~~~~~~~~~-----~~~L~~~~~~l~~L~---------~i-~~~l~~~~~~~~~~~~p~~~~ 680 (969)
.... .. ....++... ...+......++++. +. |-....+ ..++...+|+.+.
T Consensus 690 s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~-~~~p~~~~p~~~~ 768 (1204)
T 3a6p_A 690 SDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTS-SGNPIFRNPCTEQ 768 (1204)
T ss_dssp HCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECS-SCCEEECCTTHHH
T ss_pred cCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCC-CCCccccCchHHH
Confidence 2210 00 011111111 001112223333321 10 1100000 1111235899899
Q ss_pred HHhHHHHHHHHHHhhhc--cchHHHHHHH-------------HHHHHHHHhh-hhhhH-hhHHHHHHHHHHhhhhhcCcc
Q 002084 681 LRVFWPMLEKLFRSEHM--ENGNLSTAAC-------------RALSLAIQSS-GQHFV-TLLPQVLDCLSTNFVSFQNHE 743 (969)
Q Consensus 681 ~~~i~~~l~~il~~~~~--~~~~v~e~~c-------------~~l~~~~~~~-~~~~~-p~l~~l~~~l~~~~~~~~~~~ 743 (969)
+..+||.+.+++. .+. .++++.+++| ++.+.|++.- ..... +..+...+.+-.-+... +.+
T Consensus 769 i~~ilP~ll~Ll~-~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-re~ 846 (1204)
T 3a6p_A 769 ILKLLDNLLALIR-THNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFFSTL-YEN 846 (1204)
T ss_dssp HHHHHHHHHHHHH-HHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHHHHHHHHHH-HHH
T ss_pred HHHHhHHHHHHHH-HHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHHHHHHHHHH-HHH
Confidence 9999999999997 455 7899999988 6666665442 11111 22223445554444444 788
Q ss_pred cHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhcc-ccchH
Q 002084 744 CYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAAS-GALLE 822 (969)
Q Consensus 744 ~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~-~~~l~ 822 (969)
||.++.+.. ..+|..---.+.+... +.... +..+... ....-+++++.+| ..++++||..+..+- .+.+.
T Consensus 847 ~y~~lg~~~-~~l~~~fy~~~~l~~~---l~~~~-f~~l~~~-~~~~l~~li~~~~---~p~i~~CP~~~~~~~l~plL~ 917 (1204)
T 3a6p_A 847 CFHILGKAG-PSMQQDFYTVEDLATQ---LLSSA-FVNLNNI-PDYRLRPMLRVFV---KPLVLFCPPEHYEALVSPILG 917 (1204)
T ss_dssp HHHHHHHHH-HHHCTTTTTSTTHHHH---HHHHT-TSSTTTS-CHHHHHHHHHHTH---HHHHHTCCGGGTTTTHHHHHH
T ss_pred HHHHHHHHh-hcccccccCCcchHHH---HHHHH-Hhcchhc-cHHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHH
Confidence 987766553 3344421111222221 11111 1111110 0112256666665 677888886655430 13455
Q ss_pred HHHHHHHHhhc
Q 002084 823 VSFQKAAICCT 833 (969)
Q Consensus 823 ~i~~~~l~~l~ 833 (969)
.+|......|+
T Consensus 918 ~lf~~~~~~L~ 928 (1204)
T 3a6p_A 918 PLFTYLHMRLS 928 (1204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=4.4e-31 Score=334.07 Aligned_cols=724 Identities=12% Similarity=0.072 Sum_probs=437.9
Q ss_pred chHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcC---
Q 002084 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--- 79 (969)
Q Consensus 3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~--- 79 (969)
|++.+++.+++.... ++|++.| |+++|++++++|+.|..+.+++.+.. .+.++|+|||++||++|+++|.
T Consensus 1 M~d~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~----~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 1 MSDLETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTN----LPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp CCHHHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred CCcHHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 346788999998855 5677666 99999999999999999999997643 3579999999999999999998
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchh-c-cCCchHHHHHHHhhcccCCCcchHHHHHHHh
Q 002084 80 ---YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (969)
Q Consensus 80 ---~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~-~-~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~ 154 (969)
.+|++++..||+.+++.+.. .++.|++|+|.+++.++.+. + .||+.++++++.++++ ++......|.+|.
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~ 148 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND--DMVTNKGVLTVAH 148 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS--CTTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 79999999999999999975 45899999999999999874 3 6999999999999763 4456677888888
Q ss_pred hchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHh---HhhccCCCC-CcchhhhHHHHHHHHHHHHHccccc
Q 002084 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQ---SDKRFDGGV-PVQLHDRNRKILRCLLSWVRAGCFT 230 (969)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~---l~~~~~~~~-~~~~~~~~~~~l~cl~sWi~~~~~~ 230 (969)
.+.++.. ..- .+.+.+.++..-+....+.+++++... +....++.. ......+...+++|+.+-+.+
T Consensus 149 ~i~~~~~---~~~--~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~---- 219 (960)
T 1wa5_C 149 SIFKRWR---PLF--RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ---- 219 (960)
T ss_dssp HHHGGGT---TSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS----
T ss_pred HHHHHHH---Hhh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 8887652 111 133445556555666777777776544 222110000 000012223455555442211
Q ss_pred cccchhhcccchHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCc----hhHHhhHHH
Q 002084 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGD----EKVIGGLAC 306 (969)
Q Consensus 231 ~~~~~~i~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d----~d~~~~l~~ 306 (969)
.+|.. + . +.++..+..+..++.... +... ....+++ ....+.+|+
T Consensus 220 ~~~~~-~-~--------------~~~~~~~~~~~~~l~~~~--------------p~~~-~d~d~~~~~~~~~vk~~~~~ 268 (960)
T 1wa5_C 220 DIPEF-F-E--------------DNIQVGMGIFHKYLSYSN--------------PLLE-DPDETEHASVLIKVKSSIQE 268 (960)
T ss_dssp CCCHH-H-H--------------HTHHHHHHHHHHHHSCCS--------------CCCC-------CCCHHHHHHHHHHH
T ss_pred cchHH-H-H--------------HHHHHHHHHHHHHHcCCC--------------Cccc-CCcccccccHHHHHHHHHHH
Confidence 11110 0 0 001111122222221100 0000 0000000 122356778
Q ss_pred HHHHHhhhhhHHHHhcChhHHHHHHHHHhccc----CCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhH--
Q 002084 307 LMSEIGQAAPSLIVEASPEALALADALLSCVA----FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFF-- 380 (969)
Q Consensus 307 l~~~~~e~~~~~l~~~~~~~~~ll~~lL~~~~----~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~-- 380 (969)
.++.+.+.+...+.. ....+++.++.... ... ++++...+++||..+.+. +..+..++
T Consensus 269 ~l~~l~~~~~~~f~~---~~~~~~~~~~~~l~~~~~~~~-~~~~~~~al~fl~~~~~~------------~~~~~~~~~~ 332 (960)
T 1wa5_C 269 LVQLYTTRYEDVFGP---MINEFIQITWNLLTSISNQPK-YDILVSKSLSFLTAVTRI------------PKYFEIFNNE 332 (960)
T ss_dssp HHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHCCSCTT-SHHHHHHHHHHHHHHHTS------------HHHHGGGCSH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcC-cHHHHHHHHHHHHHHhCc------------HhHHHHHcCc
Confidence 888888777665542 22234444443332 222 457888999999987652 11234554
Q ss_pred HHHHHHH-HHHHHHccCCCCCCCCCCCCC---------CCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh----hhhc
Q 002084 381 SVFSALL-DALLLRAQVDESSFNDDGMVD---------LPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF----GSWG 446 (969)
Q Consensus 381 ~~~~~l~-~~l~~k~~~p~~~~~~~~~~~---------e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~----~~~~ 446 (969)
+++.+++ .+++..|.|++++.. .|+.| |.+++...|+..++++..++...| +.++..++. .+.+
T Consensus 333 ~~l~~li~~~i~~~m~~~~~d~e-~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~ 410 (960)
T 1wa5_C 333 SAMNNITEQIILPNVTLREEDVE-LFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQ 410 (960)
T ss_dssp HHHHHHHHHTHHHHHSCCGGGTT-TTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHhcCCCHHHHH-HHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHH
Confidence 8999999 688999999765432 24322 134555678888999999988877 333332221 1211
Q ss_pred -CCCCCCChhHhHHHHHHHHhhhhccc--cCC-c----ccchhH-HHH-HHHHhccCchhhhhhHHHHHHHHHHHHHHhh
Q 002084 447 -SANVPIPWKEVETKLFALNVVSEVVL--QEG-Q----AFDFSV-IMQ-LVAVLSASRSEELKGFMHIVYRSLADVIGSY 516 (969)
Q Consensus 447 -~~~~~~~W~~~Ea~Lf~l~~iae~~~--~~~-~----~~~l~~-i~~-ll~~l~~~~~~~~~~~~~v~~~t~~~lig~y 516 (969)
..+++.+|+..||++|+++++++... ... . ...+.. +.+ ++..+.+ +.+.+ +.+|+++ ++++|+|
T Consensus 411 ~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~-~~~~~---p~vr~~a-~~~lg~~ 485 (960)
T 1wa5_C 411 YMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS-NNIPH---IILRVDA-IKYIYTF 485 (960)
T ss_dssp HHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC-SSCSC---HHHHHHH-HHHHHHT
T ss_pred hccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC-CCCCC---ceehHHH-HHHHHHH
Confidence 01224679999999999999987531 101 0 001222 223 3333432 20001 2378877 5999999
Q ss_pred HHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHH-----------hhcccCCCccHHHHHH-HHHHHHhcC
Q 002084 517 SKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED-----------ASALIDEPSNLEILMW-IGEALEKRH 582 (969)
Q Consensus 517 s~wl~~~p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~-----------c~~~l~~~~~~~~l~~-~~~~l~~~~ 582 (969)
++|+ +|+++.++++.++++|.++. ++.+||.||.++|+. ++..+. | +++.+++ +...+....
T Consensus 486 ~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~-p-~l~~ll~~L~~ll~~~~ 561 (960)
T 1wa5_C 486 RNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS-N-STEILLKNLIALILKHG 561 (960)
T ss_dssp GGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT-T-THHHHHHHHHHHHHTTC
T ss_pred HhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhh-h-hHHHHHHHHHHHHHhcc
Confidence 9998 78999999999999998765 899999999999984 344554 3 5554444 444433321
Q ss_pred ---CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhh
Q 002084 583 ---LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTV 659 (969)
Q Consensus 583 ---l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i 659 (969)
.+..+.+.++++++.++...+.+ ...++..++..+...+.+..... .++.. ....+++++.+
T Consensus 562 ~~~~~~~~~e~l~~al~~vv~~~~~~--~~p~~~~l~~~L~~~l~~~~~~~------~~~~~-------~~~~~e~l~~l 626 (960)
T 1wa5_C 562 SSPEKLAENEFLMRSIFRVLQTSEDS--IQPLFPQLLAQFIEIVTIMAKNP------SNPRF-------THYTFESIGAI 626 (960)
T ss_dssp CCHHHHTSCHHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHHHHHHHTTSC------CCHHH-------HHHHHHHHHHH
T ss_pred CCCCcccccHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHhCC------CCcHH-------HHHHHHHHHHH
Confidence 11225679999999999988743 35678888888888777664321 12211 13457777777
Q ss_pred cccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHH--Hhhh
Q 002084 660 FSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLS--TNFV 737 (969)
Q Consensus 660 ~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~--~~~~ 737 (969)
.+... +++...+.+.+||++..+++ ... .++.+.++.++...+... ..+.+.+..++..+. ..+.
T Consensus 627 ~~~~~---------~~~~~~~~~~~~p~~~~iL~-~~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~ 693 (960)
T 1wa5_C 627 LNYTQ---------RQNLPLLVDSMMPTFLTVFS-EDI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWE 693 (960)
T ss_dssp HHTSC---------GGGHHHHHHHHHHHHHHHHH-TTC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGC
T ss_pred HhcCC---------cchHHHHHHHHHHHHHHHHH-hhh--HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhc
Confidence 76511 24566778999999999997 443 345666666665555443 344455555555555 4443
Q ss_pred hhcCcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhcc
Q 002084 738 SFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAAS 817 (969)
Q Consensus 738 ~~~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~ 817 (969)
.....+....++...+...++ .+.+ +..++..+ ..+.+ ...+| +..|.++..++.++|...+.
T Consensus 694 ~~~~~~~~~~~L~~~~~~~~~--~~~~-~~~~l~~~------~~~~~----~~~~~--~~a~~ll~~i~~~~~~~~~~-- 756 (960)
T 1wa5_C 694 LKGNIPAVTRLLKSFIKTDSS--IFPD-LVPVLGIF------QRLIA----SKAYE--VHGFDLLEHIMLLIDMNRLR-- 756 (960)
T ss_dssp CTTTHHHHHHHHHHHHHHHGG--GCSC-SHHHHHHH------HHHHT----CTTTH--HHHHHHHHHHHHHSCHHHHG--
T ss_pred CCCCchhHHHHHHHHHHhChH--HHHH-HHHHHHHH------HHHhC----CCccc--chHHHHHHHHHHHCCHHHHH--
Confidence 211111112233333333222 2221 12222211 11111 11245 88999999999999987432
Q ss_pred ccchHHHHHHHHHhhccCchhHHH-HHHHHHHHHH
Q 002084 818 GALLEVSFQKAAICCTAMHRGAAL-AAMSYLSCFL 851 (969)
Q Consensus 818 ~~~l~~i~~~~l~~l~~~e~~~~~-a~~~Fl~~li 851 (969)
++++.++...+..++....+..+ +.+.|+..+.
T Consensus 757 -~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 757 -PYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp -GGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 67999999888888876555443 6666666655
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.2e-30 Score=326.82 Aligned_cols=702 Identities=13% Similarity=0.112 Sum_probs=452.5
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCCh
Q 002084 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (969)
Q Consensus 4 ~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~ 83 (969)
+..+++.+++...+ ++|++.|++|+++|++++++|+.|.....++.... +.+.++|++||..||+.|+++|..+++
T Consensus 10 ~~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~---~~~~~vR~~a~~~Lkn~i~~~w~~~~~ 85 (852)
T 4fdd_A 10 QGLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLK---SEDEPTRSLSGLILKNNVKAHFQNFPN 85 (852)
T ss_dssp HHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHTTTSGGGCCH
T ss_pred hhHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHHHccCCCCH
Confidence 45667888888777 56999999999999999999999999999998522 246799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccc
Q 002084 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVI 161 (969)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~ 161 (969)
+.+..+|+.++..+. ..++.|+++++.+++.++.+.. .||+.++.++..+++. ++......+..|..+.|+..
T Consensus 86 ~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 86 GVTDFIKSECLNNIG---DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhH
Confidence 999999999998764 5678999999999999998754 6999999999999763 33445677777777777653
Q ss_pred cccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccc
Q 002084 162 DSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (969)
Q Consensus 162 ~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ 241 (969)
.. + .+ +.+......++..+.+.+.. ++..++..+++|+..++... +. .
T Consensus 161 ~~------~---~~----~~~~~~~~~il~~l~~~l~~--------~~~~vR~~A~~aL~~~~~~~-----~~-~----- 208 (852)
T 4fdd_A 161 EI------L---DS----DVLDRPLNIMIPKFLQFFKH--------SSPKIRSHAVACVNQFIISR-----TQ-A----- 208 (852)
T ss_dssp TH------H---HH----CSSSSCHHHHHHHHTTTTTC--------SSHHHHHHHHHHHHTTTTTT-----CH-H-----
T ss_pred HH------h---ch----hhhcchHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhcc-----cH-H-----
Confidence 11 0 00 00011233444444443332 24568889999988665421 10 0
Q ss_pred hHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHh
Q 002084 242 LLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVE 321 (969)
Q Consensus 242 ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~ 321 (969)
+. .....+++.+. ....++|.+..+..++.+..+++.+...+..
T Consensus 209 ~~----------------------------~~~~~~l~~l~--------~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 209 LM----------------------------LHIDSFIENLF--------ALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HH----------------------------TSHHHHHHHHH--------HHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HH----------------------------HHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 00 00011111111 1234566677777888888888877665542
Q ss_pred cChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCC
Q 002084 322 ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF 401 (969)
Q Consensus 322 ~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~ 401 (969)
....+++.++.+...+ |.+|...+++||..+++.- ......+|++.+++..++.++.|++++.
T Consensus 253 ---~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 253 ---HMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQP------------ICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp ---GHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTST------------THHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred ---HHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcch------------hHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 3446788888888876 6789999999999987641 1223457788899999999998865311
Q ss_pred C----C-CCCCCCCchH--HHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccC
Q 002084 402 N----D-DGMVDLPDGL--VQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (969)
Q Consensus 402 ~----~-~~~~~e~d~f--~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~ 474 (969)
. | +++.+++|++ ...|+..++.+..+...+|.. .+..++..+... ..+.+|...++++++++++++...+.
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~-l~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKEL-LFHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcchHH
Confidence 0 0 0111111111 234777888888888777753 333333222110 02347999999999999999887642
Q ss_pred CcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--ChhchHHHHHHHHHhccc--CchhHHHHHH
Q 002084 475 GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISE--AVSSNACASA 550 (969)
Q Consensus 475 ~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~--~p~~L~~~l~~l~~~l~~--~~~~~~Aa~a 550 (969)
-. ..++.++..+.....++.. .||.++ ++.+|+|++|+.. +..++.++++.++.++.+ +.++..|+.|
T Consensus 394 ~~-~~l~~~l~~l~~~l~d~~~------~Vr~~a-~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~a 465 (852)
T 4fdd_A 394 MI-PYLPELIPHLIQCLSDKKA------LVRSIT-CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSA 465 (852)
T ss_dssp HG-GGHHHHHHHHHHHTTCSSH------HHHHHH-HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHcCCCCH------HHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 1245566655555555542 267766 5999999999976 467999999999999975 4599999999
Q ss_pred HHHHHHHhhcccCCCccHHHHHHHH-HHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 002084 551 LRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDG 629 (969)
Q Consensus 551 l~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~ 629 (969)
+..+|+.|+..+. | +++.++... ..+... +......++++++.++..+++.-....++..++.++++.+..+...
T Consensus 466 L~~l~~~~~~~l~-~-~l~~ll~~L~~~l~~~--~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 466 FATLEEEACTELV-P-YLAYILDTLVFAFSKY--QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHGGGGG-G-GHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhhHhhH-h-HHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998864 3 556555443 333322 3556667899999999776653323568888888888776554322
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHh---hh----------
Q 002084 630 DNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS---EH---------- 696 (969)
Q Consensus 630 ~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~---~~---------- 696 (969)
. +.. ...+++++.+.+.++.. +.+....+++.+..++.. .+
T Consensus 542 ~--------~~~--------~~~~~~l~~i~~~~g~~----------~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 542 D--------KDL--------FPLLECLSSVATALQSG----------FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp C--------TTH--------HHHHHHHHHHHHHHGGG----------GHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred c--------HHH--------HHHHHHHHHHHHHHhHh----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 1 111 12355555555554421 223333333332222221 00
Q ss_pred -ccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHHhcCCCCcchhH--HHHHHHH
Q 002084 697 -MENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLF--VTTFERF 773 (969)
Q Consensus 697 -~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g~~~~~~~~~--~~l~~~l 773 (969)
..|.++.. +.+.+++.++..+|.. +.+.+ ..++..+
T Consensus 596 ~~~d~~~~~---------------------------------------~~l~~l~~l~~~l~~~--~~~~~~~~~~~~~l 634 (852)
T 4fdd_A 596 EAPDKDFMI---------------------------------------VALDLLSGLAEGLGGN--IEQLVARSNILTLM 634 (852)
T ss_dssp CCCCTHHHH---------------------------------------HHHHHHHHHHHHHGGG--GHHHHHTCCHHHHH
T ss_pred CCCcchHHH---------------------------------------HHHHHHHHHHHHHhHh--HHHHhcCCcHHHHH
Confidence 00222222 2334444455555431 11221 1122211
Q ss_pred hhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002084 774 SQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (969)
Q Consensus 774 ~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~ 853 (969)
.. .+. +..|++.++.+.+++.+.+.++..+. ++++.+++..+..+...+....+.++..+..+...
T Consensus 635 ~~-----~l~-----~~~~~vr~~a~~~l~~l~~~~~~~~~----~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~ 700 (852)
T 4fdd_A 635 YQ-----CMQ-----DKMPEVRQSSFALLGDLTKACFQHVK----PCIADFMPILGTNLNPEFISVCNNATWAIGEISIQ 700 (852)
T ss_dssp HH-----HTT-----CSSHHHHHHHHHHHHHHHHHCGGGTG----GGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHH
T ss_pred HH-----HhC-----CCChhHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 11 111 34589999999999999999987655 45788888888888777777777777766666543
Q ss_pred hhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcC-CCcccchhhHHHHHHHHHH
Q 002084 854 CLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLG-VSAMSRVHKCATILQQLAA 914 (969)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g-~~~rS~~~~~~~iL~~l~~ 914 (969)
... -+.++-..++..++.-+.. ..+++..++.+..+.+|..
T Consensus 701 ~~~--------------------~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 701 MGI--------------------EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp HGG--------------------GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred hhH--------------------hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 321 1344445666666665543 3567788888888888884
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.1e-27 Score=297.18 Aligned_cols=717 Identities=13% Similarity=0.114 Sum_probs=461.2
Q ss_pred HHHHHHHHHh-ccCCChHHHHHHHHHHHHHhcC--hHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcC------
Q 002084 7 IKVAQAVHVL-NHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE------ 77 (969)
Q Consensus 7 ~~v~~ai~~l-y~~~d~~~~~~A~~~L~~~Q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~------ 77 (969)
.++.+++..+ + ++|++.|++|+++|++++++ |+.|..+.++|.+.+ .+.++|+|||++|+++|.++
T Consensus 4 ~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 4 AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHhhccCcChHHHH
Confidence 4799999997 6 67999999999999999997 999999999997642 35799999999999999876
Q ss_pred -----cCC-CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchh-c--cCCchHHHHHHHhhcccCCCcchHH
Q 002084 78 -----GYY-LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMA 148 (969)
Q Consensus 78 -----~~~-l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~-~--~W~~~i~~li~~l~~~~~~~~~~~~ 148 (969)
|.. ++++.+..||+.+++.+. +.++.++++++.+++.++.+. + .||+.++.++..+.+.. ++.....
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~-~~~~r~~ 154 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENVKRA 154 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHHHHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC-CHHHHHH
Confidence 465 999999999999999875 456889999999999998875 3 69999999999997631 3345677
Q ss_pred HHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccc
Q 002084 149 VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGC 228 (969)
Q Consensus 149 lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~ 228 (969)
.+.++..+++++... . | .+....+.++..+...+.... .+..++..+++|+.+|+.+..
T Consensus 155 al~~l~~l~~~~~~~------~----~-----~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 155 SLLALGYMCESADPQ------S----Q-----ALVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHHTSSTT------S----S-----TTGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHcCChh------h----h-----HHHHHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHHH
Confidence 888999999886421 1 0 122355667777766655421 135789999999999987531
Q ss_pred cccccchhhcccchHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHH
Q 002084 229 FTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLM 308 (969)
Q Consensus 229 ~~~~~~~~i~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~ 308 (969)
. ...... ....+++.++. ...+++.+.....++.+
T Consensus 214 ~-~~~~~~-~~~~ll~~l~~-------------------------------------------~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 214 N-NMEREG-ERNYLMQVVCE-------------------------------------------ATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp H-HHTSHH-HHHHHHHHHHH-------------------------------------------HHTCSCHHHHHHHHHHH
T ss_pred H-HccChh-HHHHHHHHHHH-------------------------------------------HhcCCCHHHHHHHHHHH
Confidence 0 000000 00011221111 12233444444555666
Q ss_pred HHHhhhhhHHHHhcChhHH-HHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhh--hhh-hhhhhHHHHH
Q 002084 309 SEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKN--KKH-VEDMFFSVFS 384 (969)
Q Consensus 309 ~~~~e~~~~~l~~~~~~~~-~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~--~~~-~~~~~~~~~~ 384 (969)
..+++.+...+. +... .+++.++.+...+ +.++...+++||..+.+............ .+. .....++++.
T Consensus 249 ~~l~~~~~~~~~---~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (861)
T 2bpt_A 249 CKIMSKYYTFMK---PYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIK 323 (861)
T ss_dssp HHHHHHHGGGCH---HHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHH
Confidence 666555443322 1222 4556666666654 67899999999999987642111100000 000 1123467778
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHH
Q 002084 385 ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFAL 464 (969)
Q Consensus 385 ~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l 464 (969)
.++..++.++..++++. +++++ ..|+...+.+..+...+|.. .+..++..+... ..+.+|...|++++++
T Consensus 324 ~il~~ll~~l~~~~~d~-------~d~~~-~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~-l~~~~~~~r~~a~~~l 393 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNEDP-------EDDDW-NVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQN-ITADNWRNREAAVMAF 393 (861)
T ss_dssp HHHHHHHHHTTCCCCC--------CCCCC-HHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-TTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccc-------ccccC-cHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHH-cCCCChhHHHHHHHHH
Confidence 89999999888654321 11222 67888888998888877743 233332222110 1235699999999999
Q ss_pred HhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC---hhchHHHHHHHHHhccc-
Q 002084 465 NVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF---QTNARPLLLFLAAGISE- 540 (969)
Q Consensus 465 ~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~---p~~L~~~l~~l~~~l~~- 540 (969)
+++++....+.-...++.++..+......+. +.+|.++ ++++|+|++++..+ +++++.+++.++.++.+
T Consensus 394 ~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~------~~vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 466 (861)
T 2bpt_A 394 GSIMDGPDKVQRTYYVHQALPSILNLMNDQS------LQVKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH 466 (861)
T ss_dssp HHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC------HHHHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHcCCCc------HHHHHHH-HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC
Confidence 9999776421110112344443333334443 2267766 59999999999764 67999999999999986
Q ss_pred CchhHHHHHHHHHHHHHhh----cccCCCccHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 002084 541 AVSSNACASALRKICEDAS----ALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARL 615 (969)
Q Consensus 541 ~~~~~~Aa~al~~lc~~c~----~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~l 615 (969)
+.++..|+.++..+|+.|+ ..+. | +++.++. +...+.....+...|...+++++.++...+.. ...++..+
T Consensus 467 ~~v~~~a~~al~~l~~~~~~~~~~~l~-~-~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~~~~l 542 (861)
T 2bpt_A 467 PKVATNCSWTIINLVEQLAEATPSPIY-N-FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETSASI 542 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSCGGG-G-GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccccchhhH-H-HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh--hHHHHHHH
Confidence 4588999999999999997 3342 2 5554443 33433323333567889999999999998864 36788899
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhh
Q 002084 616 LSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSE 695 (969)
Q Consensus 616 l~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~ 695 (969)
+.+++..+.+.+..........+...... ++ ...+..|+.+.+.++.. +.+....++|.+..++. .
T Consensus 543 ~~~l~~~l~~~~~~~~~i~~~~~~~~~~~-~~--~~~~~~l~~l~~~~~~~----------~~~~~~~l~~~l~~~l~-~ 608 (861)
T 2bpt_A 543 STFVMDKLGQTMSVDENQLTLEDAQSLQE-LQ--SNILTVLAAVIRKSPSS----------VEPVADMLMGLFFRLLE-K 608 (861)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHH-HH--HHHHHHHHHHHHHCGGG----------TGGGHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHhhhcccCChhhHHHHHH-HH--HHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHc-c
Confidence 99999888876322100000000001111 11 23455555565555431 12345567777777775 2
Q ss_pred hccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcC--cccHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 002084 696 HMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHKDEYGPLFVTTFERF 773 (969)
Q Consensus 696 ~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~--~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l 773 (969)
...+ .+.+.++.++......+|..+.|+++.++..+...+....+ ....+.+++.++...|. .+.+.+..++..+
T Consensus 609 ~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~l~~~l 685 (861)
T 2bpt_A 609 KDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--DFRRYSDAMMNVL 685 (861)
T ss_dssp TTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--GGHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch--hccchHHHHHHHH
Confidence 2222 78899999999999999999999999888888876642111 12245667777777774 3444444444433
Q ss_pred hhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCc-----------hhHHHH
Q 002084 774 SQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH-----------RGAALA 842 (969)
Q Consensus 774 ~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e-----------~~~~~a 842 (969)
. ..+.. ...++++....+..+..+.++.+..+. ++++.+++..+.++.... .....+
T Consensus 686 ~-----~~l~~---~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~ 753 (861)
T 2bpt_A 686 A-----QMISN---PNARRELKPAVLSVFGDIASNIGADFI----PYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEA 753 (861)
T ss_dssp H-----HHHHC---TTCCTTHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHH
T ss_pred H-----HHhCC---ccccHhhhHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 2 22332 124689999999999999999887654 356667776666665421 123466
Q ss_pred HHHHHHHHHhh
Q 002084 843 AMSYLSCFLEE 853 (969)
Q Consensus 843 ~~~Fl~~li~~ 853 (969)
+++.+..++..
T Consensus 754 ~l~~~~~i~~~ 764 (861)
T 2bpt_A 754 VLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777744
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.95 E-value=1.3e-23 Score=264.60 Aligned_cols=712 Identities=11% Similarity=0.083 Sum_probs=450.1
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcC--hHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhh-----------
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ----------- 75 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~----------- 75 (969)
+.+++..+. ++|++.|++|.++|++++++ |+.|.....+|.+++ .+..+|.+|+.+|+++|.
T Consensus 3 l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCC----CCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence 667787776 57999999999999999998 999999999997642 247999999999999985
Q ss_pred cCcCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchh---ccCCchHHHHHHHhhcccCCCcchHHHHHH
Q 002084 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA---VEHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (969)
Q Consensus 76 ~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~---~~W~~~i~~li~~l~~~~~~~~~~~~lL~~ 152 (969)
..|..++++.+..||+.+++.+. +.++.+ ++++.+++.++... ..|++.++.++..+.+...++......+..
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~---~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~ 153 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLG---TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTT---TCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHhC---CCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 45899999999999999999875 334456 99999999998764 269999999999997631023445678888
Q ss_pred HhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccc
Q 002084 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (969)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~ 232 (969)
|..+++++. . +.+....+.++..+.+.+.... ++..++..+++|+..|+.+.
T Consensus 154 l~~l~~~~~----------~-------~~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~----- 205 (876)
T 1qgr_A 154 IGYICQDID----------P-------EQLQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFT----- 205 (876)
T ss_dssp HHHHHHHSC----------H-------HHHGGGHHHHHHHHHHHHSTTC------SCHHHHHHHHHHHHHHGGGC-----
T ss_pred HHHHHHhcC----------H-------hhHHhHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHH-----
Confidence 888888752 0 0144567777877777665421 13568899999999998752
Q ss_pred cchhhcc----cchHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHH
Q 002084 233 SQGSLAA----HPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLM 308 (969)
Q Consensus 233 ~~~~i~~----~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~ 308 (969)
+.. +.. ..+++.++. ...++|.+.....++.+
T Consensus 206 ~~~-~~~~~~~~~il~~l~~-------------------------------------------~~~~~~~~vr~~a~~~l 241 (876)
T 1qgr_A 206 KAN-FDKESERHFIMQVVCE-------------------------------------------ATQCPDTRVRVAALQNL 241 (876)
T ss_dssp HHH-HTSHHHHHHHHHHHHH-------------------------------------------HTTCSSHHHHHHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHH-------------------------------------------HcCCCCHHHHHHHHHHH
Confidence 111 100 001111111 12233444445556666
Q ss_pred HHHhhhhhHHHHhcChhHH-HHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhh---hhh----hhhhhhhH
Q 002084 309 SEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA---KNK----KHVEDMFF 380 (969)
Q Consensus 309 ~~~~e~~~~~l~~~~~~~~-~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~---~~~----~~~~~~~~ 380 (969)
..+++.+...+. +... .+++.++.+...+ +.++...+++||..+.+.......+.. ... .......+
T Consensus 242 ~~l~~~~~~~~~---~~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (876)
T 1qgr_A 242 VKIMSLYYQYME---TYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (876)
T ss_dssp HHHHHHSGGGCH---HHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHH
T ss_pred HHHHHHhHHHHH---HHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHH
Confidence 666665543332 1222 4667777766665 567889999999999876321100000 000 01122345
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHH
Q 002084 381 SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETK 460 (969)
Q Consensus 381 ~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~ 460 (969)
+++.+++..++..+...+++ ++.++ ...|+...+.+..+...+|.. ++..++..+... ..+.+|+..+++
T Consensus 317 ~~~~~ll~~ll~~l~~~~~d-------~~~~~-~~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~~-l~~~~~~~r~~a 386 (876)
T 1qgr_A 317 GALQYLVPILTQTLTKQDEN-------DDDDD-WNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEH-IKNPDWRYRDAA 386 (876)
T ss_dssp HHHHHHHHHHHHHTTCCCSS-------CCTTC-CCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-TTCSSHHHHHHH
T ss_pred HHHHHHhHHHHHHhhccccc-------ccccc-cHHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHHH-ccCCChHHHHHH
Confidence 66788888888887643221 01122 267788888888888777642 333333222110 123579999999
Q ss_pred HHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---ChhchHHHHHHHHHh
Q 002084 461 LFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAG 537 (969)
Q Consensus 461 Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~---~p~~L~~~l~~l~~~ 537 (969)
+++++.+++.+..+.-...++.++..+......+.. .||..+ ++.+|+|++++.. ++.+++.+++.++.+
T Consensus 387 ~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~------~vr~~a-~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~ 459 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV------VVRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (876)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSH------HHHHHH-HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHH-HHHHHHHHHhCchhcccHHHHHHHHHHHHHH
Confidence 999999998765211100123444433333334432 267766 5999999999876 568999999999999
Q ss_pred cccC-chhHHHHHHHHHHHHHhh--------------cccCCCccHHHHHHHH-HHHHhcCC-ChhhHHHHHHHHHHHhc
Q 002084 538 ISEA-VSSNACASALRKICEDAS--------------ALIDEPSNLEILMWIG-EALEKRHL-PLEDEEEVVGAISLILG 600 (969)
Q Consensus 538 l~~~-~~~~~Aa~al~~lc~~c~--------------~~l~~~~~~~~l~~~~-~~l~~~~l-~~~~~~~l~eai~~ii~ 600 (969)
+.++ .++..|+.++..+|+.|+ ..+. | +++.++... ..+..... +...+..++++++.++.
T Consensus 460 l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~ 537 (876)
T 1qgr_A 460 LSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS-S-SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537 (876)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST-T-THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhh-H-hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH
Confidence 9874 588999999999999987 1233 3 555444443 33222211 23456789999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHH
Q 002084 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680 (969)
Q Consensus 601 ~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~ 680 (969)
..+.+ ...++..++.+++..+...+..........++..+.... ...+.+++.+.+.++. +.+.+.
T Consensus 538 ~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~l~~l~~~~~~---------~~~~~~ 603 (876)
T 1qgr_A 538 NSAKD--CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQ---SLLCATLQNVLRKVQH---------QDALQI 603 (876)
T ss_dssp TCCST--THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHH---HHHHHHHHHHHTTSCH---------HHHHTT
T ss_pred HCchh--hHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH---HHHHHHHHHHHHHhCh---------hhhhHH
Confidence 99863 467889999999988887643211100111111111111 1223444444444330 112234
Q ss_pred HHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhh-cC--cccHHHHHHHHHHHhc
Q 002084 681 LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSF-QN--HECYIRTASVVIEEFG 757 (969)
Q Consensus 681 ~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~-~~--~~~~L~l~~~li~~~g 757 (969)
...++|.+..++.. ......+.+.++.+++..+..+|..+.|+++.++..+...+... .+ ....+.+++.++...|
T Consensus 604 ~~~l~~~l~~~l~~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 604 SDVVMASLLRMFQS-TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHh-ccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 56677777776652 21124688999999999999999888898888877777655421 01 1124567777777777
Q ss_pred CCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCc-
Q 002084 758 HKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH- 836 (969)
Q Consensus 758 ~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e- 836 (969)
. .+.+.+..++..+.. .+.+ .+.++++....+..++++....+..+. ++++.+++....++..+.
T Consensus 683 ~--~~~~~~~~i~~~l~~-----~l~~---~~~~~~~~~~~~~~l~~i~~~~g~~~~----~~l~~~~~~l~~~~~~~~~ 748 (876)
T 1qgr_A 683 S--NIIPFCDEVMQLLLE-----NLGN---ENVHRSVKPQILSVFGDIALAIGGEFK----KYLEVVLNTLQQASQAQVD 748 (876)
T ss_dssp G--GGHHHHHHHHHHHHH-----HHTC---TTSCGGGHHHHHHHHHHHHHHHGGGGG----GGHHHHHHHHHHHHTCCCC
T ss_pred H--hhhhhHHHHHHHHHH-----HhCC---ccccHHhhHHHHHHHHHHHHHhchhHH----HHHHHHHHHHHHHHhccCC
Confidence 4 334444444443322 2322 124678999999999999998876643 467777877666665432
Q ss_pred ----------hhHHHHHHHHHHHHHhhh
Q 002084 837 ----------RGAALAAMSYLSCFLEEC 854 (969)
Q Consensus 837 ----------~~~~~a~~~Fl~~li~~~ 854 (969)
.....++++.+..++...
T Consensus 749 ~~d~~~~~~~~~~r~~~~~~~~~i~~~~ 776 (876)
T 1qgr_A 749 KSDYDMVDYLNELRESCLEAYTGIVQGL 776 (876)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133455566666666543
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.87 E-value=6.1e-20 Score=212.98 Aligned_cols=433 Identities=12% Similarity=0.067 Sum_probs=290.0
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhc--ChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcC---------
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQ--TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE--------- 77 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~--s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~--------- 77 (969)
+.+++..++ ++|++.|++|+++|+++++ .|+.|.....+|.+.+ .+.++|.+|+.+|++.|.++
T Consensus 3 l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 667787777 5799999999999999998 4999999999998642 35799999999999999877
Q ss_pred --cCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchh-c--cCCchHHHHHHHhhcccCCCcchHHHHHH
Q 002084 78 --GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (969)
Q Consensus 78 --~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~-~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~ 152 (969)
|..++++.+..||+.++..+. ..++.+ ++++.+++.++.+. + .|++.++.++..+++...++......+..
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~---~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLG---TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTT---CCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhC---CCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 578999999999999998875 344556 99999999999875 3 69999999999997631033456788999
Q ss_pred HhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccc
Q 002084 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (969)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~ 232 (969)
|..++++... . . +....+.++..+..++.... ++..++..+++|+.+|+.+.
T Consensus 154 l~~l~~~~~~--~----~-----------~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~----- 205 (462)
T 1ibr_B 154 IGYICQDIDP--E----Q-----------LQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFT----- 205 (462)
T ss_dssp HHHHHHHSCG--G----G-----------TGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHTTTT-----
T ss_pred HHHHHHhCCc--h----h-----------hHhHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHHHHHH-----
Confidence 9999987621 0 0 22345567777777665421 13568999999999998642
Q ss_pred cchhhcccchHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHh
Q 002084 233 SQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIG 312 (969)
Q Consensus 233 ~~~~i~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~ 312 (969)
.. ..... . +...+++.+. ....+.|.+.....++.+..++
T Consensus 206 ~~-~~~~~--------------~-----------------~~~~l~~~l~--------~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 206 KA-NFDKE--------------S-----------------ERHFIMQVVC--------EATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp HH-HHTSH--------------H-----------------HHHHHHHHHH--------HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HH-hhhhh--------------H-----------------HHHHHHHHHH--------HhcCCCCHHHHHHHHHHHHHHH
Confidence 10 00000 0 0000111111 1224456667777888888888
Q ss_pred hhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhh----hhh---hhhhhhhHHHHHH
Q 002084 313 QAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA----KNK---KHVEDMFFSVFSA 385 (969)
Q Consensus 313 e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~----~~~---~~~~~~~~~~~~~ 385 (969)
+.+...+...-+. .+++.++.+.... +.++...+++||..+++.......... ... ......+++++..
T Consensus 246 ~~~~~~~~~~~~~--~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 246 SLYYQYMETYMGP--ALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp HHCGGGCTTTTTT--THHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 8776544332220 4566666666554 567889999999999876421110000 000 0122345667788
Q ss_pred HHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHH
Q 002084 386 LLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALN 465 (969)
Q Consensus 386 l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~ 465 (969)
++..+++.+.-.+++ ++ +++ ...|+...+++..++..+|. .++..++..+... ..+.+|+..++++++++
T Consensus 322 l~p~l~~~l~~~d~d---~~----~~~-~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~-l~~~~~~~r~aal~~l~ 391 (462)
T 1ibr_B 322 LVPILTQTLTKQDEN---DD----DDD-WNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEH-IKNPDWRYRDAAVMAFG 391 (462)
T ss_dssp HHHHHHHHTTCCCSS---CC----TTC-CSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHH-TTCSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcccc---cc----ccc-chHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH-hcCCChHHHHHHHHHHH
Confidence 888888877533221 00 111 25688899999999988884 3444333322111 12457999999999999
Q ss_pred hhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---ChhchHHHHHHHHHhcc
Q 002084 466 VVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGIS 539 (969)
Q Consensus 466 ~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~---~p~~L~~~l~~l~~~l~ 539 (969)
++++++..+.-...++.++..+......+.. .||.++ ++++|+|++|+.. ++.|++++++.|+.+|.
T Consensus 392 ~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~------~Vr~~a-~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 392 CILEGPEPSQLKPLVIQAMPTLIELMKDPSV------VVRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HTSSSSCTTTTCTTTTTHHHHHHHGGGCSCH------HHHHHH-HHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHhcCCCH------HHHHHH-HHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 9998765321111245666655555544442 267767 5999999999987 56899999999998774
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.44 E-value=6.7e-10 Score=144.43 Aligned_cols=673 Identities=11% Similarity=0.076 Sum_probs=364.3
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCh----------HHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhc
Q 002084 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD----------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQN 76 (969)
Q Consensus 7 ~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~----------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~ 76 (969)
.++.+.+..+- ++|+..|.+|.+.|.+.-+.+ ..-......|.+ .+.++|..|+..|..-...
T Consensus 6 ~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d------~~~~vR~~A~~~L~~l~~~ 78 (1230)
T 1u6g_C 6 YHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED------KNGEVQNLAVKCLGPLVSK 78 (1230)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHh
Confidence 35777777765 689999999988887764432 222233344432 2479999999999877653
Q ss_pred CcCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc-----------cCCchHHHHHHHhhcccCCCcc
Q 002084 77 EGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-----------EHGKPIEKLFYSLQNLQSQDNG 145 (969)
Q Consensus 77 ~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~-----------~W~~~i~~li~~l~~~~~~~~~ 145 (969)
++++....+++.++..+. ..+..+|...+.+|+.++-... .|+..++.++..+... .+...
T Consensus 79 ----~~~~~~~~i~~~Ll~~l~---d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~ 150 (1230)
T 1u6g_C 79 ----VKEYQVETIVDTLCTNML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSV 150 (1230)
T ss_dssp ----SCHHHHHHHHHHHHHHTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHH
T ss_pred ----CCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHH
Confidence 566677777777776653 4456788888889988876554 2888888888888631 12334
Q ss_pred hHHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 002084 146 NMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR 225 (969)
Q Consensus 146 ~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~ 225 (969)
....+.++..+.+..++ . +. ...+.++..+...+.. ++..++..+++|+.+-+.
T Consensus 151 ~~~al~~l~~~~~~~~~--~----l~------------~~~~~ll~~l~~~L~~--------~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGG--L----LV------------NFHPSILTCLLPQLTS--------PRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHHHHHHHHHHHHHTCS--S----CT------------TTHHHHHHHHGGGGGC--------SSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHh--H----HH------------HHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHHHH
Confidence 45667777776665431 1 21 1234555555555443 234688889999888776
Q ss_pred ccccccccchhhcccchHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHH
Q 002084 226 AGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA 305 (969)
Q Consensus 226 ~~~~~~~~~~~i~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~ 305 (969)
.. +... ...+++.+++.|.++ .+.+.....+
T Consensus 205 ~~-----~~~~--~~~~l~~l~~~L~~~------------------------------------------~~~~~r~~a~ 235 (1230)
T 1u6g_C 205 SC-----GNIV--FVDLIEHLLSELSKN------------------------------------------DSMSTTRTYI 235 (1230)
T ss_dssp TC-----------CTTHHHHHHHHHHHT------------------------------------------CSSCSCTTHH
T ss_pred hc-----CHHH--HHHHHHHHHHHhccC------------------------------------------CchhHHHHHH
Confidence 42 1111 112233222222110 0001112223
Q ss_pred HHHHHHhhhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHH
Q 002084 306 CLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSA 385 (969)
Q Consensus 306 ~l~~~~~e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 385 (969)
..+..+++.....+. +....+++.++.....+ +.++.+.++..|..+.+.. .+.+.|++.+
T Consensus 236 ~~l~~l~~~~~~~~~---~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~--------------~~~~~~~l~~ 296 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIG---EYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRC--------------PKEVYPHVST 296 (1230)
T ss_dssp HHHHHHHHHSSGGGT---TSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCT--------------TCCCHHHHHH
T ss_pred HHHHHHHHHhHHHHH---HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHC--------------hHHHHHhHHH
Confidence 333333333222121 11224566666666554 4567777777777666532 1346788899
Q ss_pred HHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHH
Q 002084 386 LLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALN 465 (969)
Q Consensus 386 l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~ 465 (969)
++..+++.+.++++...+ .+.+..+++.+. + +.+.... .-.... ......|.-.++++-++.
T Consensus 297 li~~ll~~l~~d~~~~~~-~d~~~~~~~~~~----~----------~~~~~~~-~~~~~~--~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 297 IINICLKYLTYDPNYNYD-DEDEDENAMDAD----G----------GDDDDQG-SDDEYS--DDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHHTTCCCCC------------------------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCc-cccccccccccc----c----------cccchhh-cccccc--cccccCHHHHHHHHHHHH
Confidence 999999999886542100 000000111100 0 0000000 000000 012356998999999999
Q ss_pred hhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHH--------------------hChh
Q 002084 466 VVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS--------------------AFQT 525 (969)
Q Consensus 466 ~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~--------------------~~p~ 525 (969)
.++...++ .-...++.++..+......+.. .+|..+ +..++....-+. .-..
T Consensus 359 ~l~~~~~~-~~~~~~~~l~~~l~~~l~d~~~------~Vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1230)
T 1u6g_C 359 AVVSTRHE-MLPEFYKTVSPALISRFKEREE------NVKADV-FHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 430 (1230)
T ss_dssp HHHTTCCT-THHHHHTTTHHHHHSTTSCSSS------HHHHHH-HHHHHHHHHHHCCC------------CCCHHHHHHH
T ss_pred HHHHhchh-HHHHHHHHHHHHHHHHcCCCch------HHHHHH-HHHHHHHHHHhccccccccCccccccccchHHHHHH
Confidence 98874431 1000012222222222222221 134333 233333322110 0124
Q ss_pred chHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHhcCCChhhHHHHHHHHHHHhccC
Q 002084 526 NARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSV 602 (969)
Q Consensus 526 ~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~ii~~l 602 (969)
+++.+++.+.+.+.++. ++..++.++..++..|+..+. + +++.+.... ..+....-....+......++.++...
T Consensus 431 ~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~-~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 431 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT-Q-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp HTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG-G-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH-H-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 67778888888888754 778899999999999887663 2 555554443 333322213466778888888888777
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHH
Q 002084 603 SNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLR 682 (969)
Q Consensus 603 p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~ 682 (969)
+.+. ...++..++..++..+ ... ++.. . ...+..++.+.+.++... . .....+.+.+.
T Consensus 509 ~~~~-~~~~l~~llp~L~~~l----~d~-------~~~v----~---~~al~~l~~l~~~~~~~~-~--~~~~~~~~~~~ 566 (1230)
T 1u6g_C 509 SPQV-FHPHVQALVPPVVACV----GDP-------FYKI----T---SEALLVTQQLVKVIRPLD-Q--PSSFDATPYIK 566 (1230)
T ss_dssp CGGG-GHHHHTTTHHHHHHHH----TCS-------SHHH----H---HHHHHHHHHHHHHHCCSS-S--CCCCCCHHHHH
T ss_pred CHHH-HHhHHHHHHHHHHHHH----ccc-------chHH----H---HHHHHHHHHHHHHhcCcc-c--ccccchHHHHH
Confidence 6543 4567777776665433 111 1100 0 122344444444333210 0 11223456678
Q ss_pred hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHHhcCCCCc
Q 002084 683 VFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEY 762 (969)
Q Consensus 683 ~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g~~~~~ 762 (969)
.++|.+...+. ....+.++.+.+..+++..+...|..+.+.++.+++.+.............+..++.+...-+. .+.
T Consensus 567 ~ll~~ll~~l~-~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~-~~~ 644 (1230)
T 1u6g_C 567 DLFTCTIKRLK-AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLK-IDL 644 (1230)
T ss_dssp HHHHHHHHHHS-CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSC-CCC
T ss_pred HHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccc-cch
Confidence 88888887775 3556788999999999999999998888888888887776543210001122333333221111 122
Q ss_pred chhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHH
Q 002084 763 GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALA 842 (969)
Q Consensus 763 ~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a 842 (969)
.+.+..++..+.. .+ -++++++.+.....+.++++++|..+.. +.+..++...+..+...+......
T Consensus 645 ~~~~~~i~~~L~~-----~l-----~~~~~~~r~~a~~al~~l~~~~~~~~~~---~~v~~~l~~ll~ll~~~D~~~~~~ 711 (1230)
T 1u6g_C 645 RPVLGEGVPILAS-----FL-----RKNQRALKLGTLSALDILIKNYSDSLTA---AMIDAVLDELPPLISESDMHVSQM 711 (1230)
T ss_dssp HHHHHHHHHHHHH-----HT-----TSCCHHHHHHHHHHHHHHHHHCCTTCCH---HHHHHHHTTCGGGSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-----HH-----HhCCHHHHHHHHHHHHHHHhcccccCCH---HHHHHHHHHHHhhcCcchHHHHHH
Confidence 2334444433222 11 1567889999999999999998754311 233333332222333455667788
Q ss_pred HHHHHHHHHhh
Q 002084 843 AMSYLSCFLEE 853 (969)
Q Consensus 843 ~~~Fl~~li~~ 853 (969)
+.++|..++..
T Consensus 712 ~~~~L~~l~~~ 722 (1230)
T 1u6g_C 712 AISFLTTLAKV 722 (1230)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHh
Confidence 88988888854
No 14
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.41 E-value=1.8e-11 Score=128.17 Aligned_cols=175 Identities=11% Similarity=0.157 Sum_probs=155.8
Q ss_pred HhhHHHHHHHHHHhhhhhc---CcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHH
Q 002084 722 VTLLPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAY 798 (969)
Q Consensus 722 ~p~l~~l~~~l~~~~~~~~---~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~ 798 (969)
..++|++++.++.+|..+. +.|.+|.+.+.+|..+|+ ...+.+..+++.+.++| +.++.+ ++.++||++..|
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~--~i~~~vp~Il~~VFe~T-L~MI~~--df~eyPehR~~F 142 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG--HITAEIPQIFDAVFECT-LNMINK--DFEEYPEHRTNF 142 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHHH-HHHHSS--TTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHH-HHHHhc--ccccChHHHHHH
Confidence 3567889999999998653 357799999999999997 45678888888888998 887764 889999999999
Q ss_pred HHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHH
Q 002084 799 TNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVI 878 (969)
Q Consensus 799 f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (969)
|.|+..+..+|+..++..|++.+..++++.+||+++.+|+....+++.+.++++..... .+..+++.
T Consensus 143 f~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~-------------~~~~~~Fy 209 (321)
T 1w9c_A 143 FLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE-------------EAAAQSFY 209 (321)
T ss_dssp HHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHC-------------HHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-------------hHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999876421 26788999
Q ss_pred HhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHH
Q 002084 879 SHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAA 914 (969)
Q Consensus 879 ~~~G~~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~ 914 (969)
++++..++..++..+++..++|++..++.+|+.|..
T Consensus 210 ~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 210 QTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999994
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.33 E-value=1.5e-06 Score=108.47 Aligned_cols=543 Identities=9% Similarity=0.037 Sum_probs=306.9
Q ss_pred hhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC---CcHHHHHHHHHHHHhcCCC-------hhHHHHh
Q 002084 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEG-------LPQALLC 279 (969)
Q Consensus 210 ~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~---~~~~~a~~~l~ei~~~~~~-------~~~~l~~ 279 (969)
..++..+-.++..-.... .|.+ ....+++.+++.+.++ ...+.++.++..+...... +...+++
T Consensus 109 ~~vr~~~~~~l~~i~~~~----~p~~--~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~ 182 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIE----LPHG--AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182 (861)
T ss_dssp HHHHHHHHHHHHHHHHHH----GGGT--CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh----Cccc--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Confidence 457777777777655542 1211 1345888888888764 4678888988888775421 1222333
Q ss_pred hhhhhHHhhhhhhhccC--chhHHhhHHHHHHHHhhhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHH
Q 002084 280 RVPFLKELLLLPALTDG--DEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (969)
Q Consensus 280 ~~~~l~~~~~~~~~~~~--d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l 357 (969)
.+. ..+.++ +.+......+.+..+.+.....+. .......+++.+..+...+ +.++...++.-...+
T Consensus 183 ~l~--------~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~--~~~~r~~a~~~l~~l 251 (861)
T 2bpt_A 183 AIV--------QGAQSTETSKAVRLAALNALADSLIFIKNNME-REGERNYLMQVVCEATQAE--DIEVQAAAFGCLCKI 251 (861)
T ss_dssp HHH--------HHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHT-SHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHH
T ss_pred HHH--------HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHcc-ChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 222 123333 444444445555544321111111 0001112455555555554 566777777666666
Q ss_pred HHHhhccchhhhhhhhhhhhhhHHHHH-HHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcC----
Q 002084 358 ASYILGLDASIAKNKKHVEDMFFSVFS-ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLR---- 432 (969)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg---- 432 (969)
.+... ..+.+++. .++..++..+. + . + .+.|....+.+..++....
T Consensus 252 ~~~~~--------------~~~~~~l~~~l~~~~~~~~~-------~----~--~--~~vr~~a~~~l~~l~~~~~~~~~ 302 (861)
T 2bpt_A 252 MSKYY--------------TFMKPYMEQALYALTIATMK-------S----P--N--DKVASMTVEFWSTICEEEIDIAY 302 (861)
T ss_dssp HHHHG--------------GGCHHHHHHTHHHHHHHHTT-------C----S--S--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------HHHHHHHHHHHHHHHHHHHc-------C----C--c--HHHHHHHHHHHHHHHHHHHhhhh
Confidence 55421 23445555 55555554332 0 0 1 3556666666655544321
Q ss_pred -----------------c--HHHHHHHHhhhhcCC--CCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhc
Q 002084 433 -----------------S--ATFIQKVFFGSWGSA--NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS 491 (969)
Q Consensus 433 -----------------~--~~~l~~l~~~~~~~~--~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~ 491 (969)
. ...+..++..+.... ....+|....++.-++..++....+ . .++.+++.+....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~---~~~~l~~~l~~~l 378 (861)
T 2bpt_A 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-H---ILEPVLEFVEQNI 378 (861)
T ss_dssp HHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-G---GHHHHHHHHHHHT
T ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-h---HHHHHHHHHHHHc
Confidence 0 112333333332211 1124588888999999998887752 1 1466777666554
Q ss_pred cCchhhhhhHHHHHHHHHHHHHHhhHHHHH--hChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCcc
Q 002084 492 ASRSEELKGFMHIVYRSLADVIGSYSKWIS--AFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSN 567 (969)
Q Consensus 492 ~~~~~~~~~~~~v~~~t~~~lig~ys~wl~--~~p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~ 567 (969)
..+..+ +|..+ +..+|..++... .-..+++.+++.++..+.++. ++.+|+.++.++|+.+...+....+
T Consensus 379 ~~~~~~------~r~~a-~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 379 TADNWR------NREAA-VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp TCSSHH------HHHHH-HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred CCCChh------HHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 443322 46655 488888875431 123577889999999998754 8899999999999999876532234
Q ss_pred HHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHhccCCc--hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHH
Q 002084 568 LEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSN--KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQ 644 (969)
Q Consensus 568 ~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~--~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 644 (969)
++.++. +...+. . +...+.....+++.++...++ .+....++..++ ..+.+.+..... ++...
T Consensus 452 ~~~~l~~l~~~l~-~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il----~~L~~~l~~~d~-----~~~vr-- 517 (861)
T 2bpt_A 452 LPGVVQACLIGLQ-D--HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALV----DGLIGAANRIDN-----EFNAR-- 517 (861)
T ss_dssp HHHHHHHHHHHHT-S--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHH----HHHHHHHTCSCC-----GGGHH--
T ss_pred HHHHHHHHHHHhc-c--ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH----HHHHHHHhCcCc-----chHHH--
Confidence 544443 333332 2 256677777888888776541 111234444444 444444432110 11110
Q ss_pred HHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhh-------------ccchHHHHHHHHHHH
Q 002084 645 ILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH-------------MENGNLSTAACRALS 711 (969)
Q Consensus 645 ~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~-------------~~~~~v~e~~c~~l~ 711 (969)
...+..++.+.+..+. .+.+.+.+++|.+...+. .. ....++...+|.++.
T Consensus 518 -----~~a~~al~~l~~~~~~----------~~~~~~~~l~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 581 (861)
T 2bpt_A 518 -----ASAFSALTTMVEYATD----------TVAETSASISTFVMDKLG-QTMSVDENQLTLEDAQSLQELQSNILTVLA 581 (861)
T ss_dssp -----HHHHHHHHHHHHHCCG----------GGHHHHHHHHHHHHHHHH-HHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcch----------hhHHHHHHHHHHHHHHHH-HHHhhhcccCChhhHHHHHHHHHHHHHHHH
Confidence 1123444444443321 123456677777766665 22 113456678999999
Q ss_pred HHHHhhhhhhHhhHHHHHHHHHHhhhhhcC---cccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCC
Q 002084 712 LAIQSSGQHFVTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYIC 788 (969)
Q Consensus 712 ~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~---~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~ 788 (969)
..++.+|..+.|+++.+++.+...+..... ....+...+.++..+|. ++.+.+..++..+.. .+.
T Consensus 582 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~-----~l~----- 649 (861)
T 2bpt_A 582 AVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLK-----ALN----- 649 (861)
T ss_dssp HHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHH-----HHH-----
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHH-----Hhc-----
Confidence 999999988889998888888776653211 11245566777777775 344445454443333 221
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCc--hhHHHHHHHHHHHHHhhhh
Q 002084 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH--RGAALAAMSYLSCFLEECL 855 (969)
Q Consensus 789 ~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e--~~~~~a~~~Fl~~li~~~~ 855 (969)
..++++....+.++..+.+.....+. ++++.+++..+..+...+ ++...+++..+..++...+
T Consensus 650 ~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 650 QVDSPVSITAVGFIADISNSLEEDFR----RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTGGGGH----HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred cccHHHHHHHHHHHHHHHHHhchhcc----chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 36788999999999999988765432 456667777777776543 6677778887777776543
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.26 E-value=1.3e-05 Score=99.74 Aligned_cols=360 Identities=10% Similarity=0.034 Sum_probs=221.5
Q ss_pred CCChhHhHHHHHHHHhhhhccccCCcccchhHHHH-HHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-hhchH
Q 002084 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNAR 528 (969)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~-ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~-p~~L~ 528 (969)
..++.-..+++++++.+++.+..+.....+..++. ++..+.+. ... +|..+ +..++.+++-.... ..|++
T Consensus 411 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~------vr~~a-~~aL~~l~~~~~~~l~~~l~ 482 (852)
T 4fdd_A 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKR------VQEAA-CSAFATLEEEACTELVPYLA 482 (852)
T ss_dssp CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHH------HHHHH-HHHHHHHHHHHGGGGGGGHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHH------HHHHH-HHHHHHHHHHhhHhhHhHHH
Confidence 45689999999999999987754322122344444 33344322 211 45544 47888877654432 24889
Q ss_pred HHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHhccCCch
Q 002084 529 PLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGE-ALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (969)
Q Consensus 529 ~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~-~l~~~~l~~~~~~~l~eai~~ii~~lp~~ 605 (969)
.+++.|+..+.... ....+..++..+++..+..+..+.+++.++...- .+....-+..+...++++++.++.++...
T Consensus 483 ~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~ 562 (852)
T 4fdd_A 483 YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG 562 (852)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHh
Confidence 99999998887543 3455788999999888876654334444433221 11111111222347899999999887652
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc------CCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHH
Q 002084 606 ELKNNLLARLLSSSYEAIGKLIDGD------NNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFA 679 (969)
Q Consensus 606 ~~~~~~l~~ll~p~~~~l~~~~~~~------~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~ 679 (969)
...++..++..++..+++.+... +......+... ....++.++.+.+.++.. +.+
T Consensus 563 --~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~-------~~~~l~~l~~l~~~l~~~----------~~~ 623 (852)
T 4fdd_A 563 --FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF-------MIVALDLLSGLAEGLGGN----------IEQ 623 (852)
T ss_dssp --GHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHH-------HHHHHHHHHHHHHHHGGG----------GHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchH-------HHHHHHHHHHHHHHHhHh----------HHH
Confidence 35667777766666666543210 10000011111 123355555565555421 112
Q ss_pred HH--HhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcC--cccHHHHHHHHHHH
Q 002084 680 LL--RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEE 755 (969)
Q Consensus 680 ~~--~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~--~~~~L~l~~~li~~ 755 (969)
.+ ..+++++...+.. .+..+.+.++.+++...+.++..+.++++.++..+...+....+ .....+.++.++..
T Consensus 624 ~~~~~~~~~~l~~~l~~---~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~ 700 (852)
T 4fdd_A 624 LVARSNILTLMYQCMQD---KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQ 700 (852)
T ss_dssp HHHTCCHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHhCC---CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 22 3566666665531 45789999999999999999999999998888888766532111 11245677777777
Q ss_pred hcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhc-c
Q 002084 756 FGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT-A 834 (969)
Q Consensus 756 ~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~-~ 834 (969)
+|. ++.+.+..++..+.. .+.. ...+..+.+.....++|+.+++|..+- +.++.+++-.+.+|. .
T Consensus 701 ~~~--~~~p~~~~il~~L~~-----~l~~---~~~~~~~~~~a~~~igrl~~~~~~~~~----~~l~~~~~~~~~~l~~~ 766 (852)
T 4fdd_A 701 MGI--EMQPYIPMVLHQLVE-----IINR---PNTPKTLLENTAITIGRLGYVCPQEVA----PMLQQFIRPWCTSLRNI 766 (852)
T ss_dssp HGG--GGGGGTHHHHHHHHH-----HHTC---SSCCHHHHHHHHHHHHHHHHHCHHHHG----GGHHHHHHHHHHHHHTS
T ss_pred hhH--hHHHHHHHHHHHHHH-----HhCC---CCCCchHHHHHHHHHHHHHHhCHHHhC----ccHHHHHHHHHHHhccc
Confidence 776 355566555554433 2221 233456899999999999999998764 457777777777785 4
Q ss_pred CchhHHHHHHHHHHHHHhhh
Q 002084 835 MHRGAALAAMSYLSCFLEEC 854 (969)
Q Consensus 835 ~e~~~~~a~~~Fl~~li~~~ 854 (969)
.+.+-..++++-+..++...
T Consensus 767 ~d~~e~~~a~~~l~~li~~~ 786 (852)
T 4fdd_A 767 RDNEEKDSAFRGICTMISVN 786 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHhC
Confidence 55666778888888888663
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.26 E-value=4.2e-06 Score=104.65 Aligned_cols=542 Identities=10% Similarity=0.076 Sum_probs=297.2
Q ss_pred HHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC----CcHHHHHHHHHHHHhcCC-ChhHHHHhhhhhhHHhh
Q 002084 214 RKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ----SSFDVAIEVLVELVGRHE-GLPQALLCRVPFLKELL 288 (969)
Q Consensus 214 ~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~----~~~~~a~~~l~ei~~~~~-~~~~~l~~~~~~l~~~~ 288 (969)
..+..|+..-.... .+... ...+++.+++.+.++ .....++.++..+..... +.....++.++. .+
T Consensus 107 ~~~~~~l~~i~~~~----~~~~~--w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~---~l 177 (876)
T 1qgr_A 107 SSASQCVAGIACAE----IPVNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILT---AI 177 (876)
T ss_dssp CHHHHHHHHHHHHH----GGGTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHH---HH
T ss_pred HHHHHHHHHHHHhh----Ccccc--cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHH---HH
Confidence 56667776655532 12111 356888888888765 356788888888776532 111111122211 11
Q ss_pred hhhhhccC--chhHHhhHHHHHHHHhhhhhHHHHhcChhH-HHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccc
Q 002084 289 LLPALTDG--DEKVIGGLACLMSEIGQAAPSLIVEASPEA-LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD 365 (969)
Q Consensus 289 ~~~~~~~~--d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~-~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~ 365 (969)
. ..+.++ +.+......+.+..+.+.....+. .... ..+++.+......+ +.++...++++...+.+...
T Consensus 178 ~-~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~il~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~--- 249 (876)
T 1qgr_A 178 I-QGMRKEEPSNNVKLAATNALLNSLEFTKANFD--KESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYY--- 249 (876)
T ss_dssp H-HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHT--SHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSG---
T ss_pred H-HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhH---
Confidence 1 122333 334333344555544332111111 1111 12566666665554 56677778888777665421
Q ss_pred hhhhhhhhhhhhhhHHHHH-HHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhc-------------
Q 002084 366 ASIAKNKKHVEDMFFSVFS-ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLL------------- 431 (969)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~-~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~il------------- 431 (969)
..+.|++. .+++.++.-+..++ .+.|....+++..++...
T Consensus 250 -----------~~~~~~~~~~l~~~~~~~~~~~~---------------~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 250 -----------QYMETYMGPALFAITIEAMKSDI---------------DEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp -----------GGCHHHHTTTHHHHHHHHHTCSS---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHhcCCc---------------hHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 23455555 56666655442110 123333332222222110
Q ss_pred ---------Cc-----HHHHHHHHhhhhcCC--CCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCch
Q 002084 432 ---------RS-----ATFIQKVFFGSWGSA--NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (969)
Q Consensus 432 ---------g~-----~~~l~~l~~~~~~~~--~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~ 495 (969)
+- ...+..++..+.... ....+|....++..+++.+++...+ . .++.++..+......+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~---~~~~~l~~l~~~l~~~~ 379 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-D---IVPHVLPFIKEHIKNPD 379 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-G---GHHHHHHHHHHHTTCSS
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-h---hHHHHHHHHHHHccCCC
Confidence 00 112223333332111 1235799999999999999988762 1 14666666655444333
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHH--hChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHH
Q 002084 496 EELKGFMHIVYRSLADVIGSYSKWIS--AFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEIL 571 (969)
Q Consensus 496 ~~~~~~~~v~~~t~~~lig~ys~wl~--~~p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l 571 (969)
.+ +|..+ +..+|.+++... .-..+++.+++.++..+.++. ++.+|+.++.++|+.+......+.+++.+
T Consensus 380 ~~------~r~~a-~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~ 452 (876)
T 1qgr_A 380 WR------YRDAA-VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452 (876)
T ss_dssp HH------HHHHH-HHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHH
T ss_pred hH------HHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHH
Confidence 22 56656 589998886542 112478889999999998754 89999999999999988754112244433
Q ss_pred H-HHHHHHHhcCCChhhHHHHHHHHHHHhccCCc------------hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 002084 572 M-WIGEALEKRHLPLEDEEEVVGAISLILGSVSN------------KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHN 638 (969)
Q Consensus 572 ~-~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~------------~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~ 638 (969)
+ .+...+.. +...+.....+++.++...++ .+....++..++ ..+.+.+..... .+
T Consensus 453 l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il----~~L~~~l~~~~~----~~ 521 (876)
T 1qgr_A 453 LQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIV----QKLLETTDRPDG----HQ 521 (876)
T ss_dssp HHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHH----HHHHHHTTSCSS----CS
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHH----HHHHHHHhCcCc----ch
Confidence 3 33443322 255677788888888765320 011223444444 333444432210 01
Q ss_pred chhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhh--------c-cc----hHHHHH
Q 002084 639 PATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH--------M-EN----GNLSTA 705 (969)
Q Consensus 639 ~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~--------~-~~----~~v~e~ 705 (969)
.... ...++.++.+.+..+. . ..+.+..++|.+...+. .. . .| .++.+.
T Consensus 522 ~~~r-------~~~~~~l~~l~~~~~~-------~---~~~~~~~l~~~l~~~l~-~~~~~~~~~~~~~d~~~~~~~~~~ 583 (876)
T 1qgr_A 522 NNLR-------SSAYESLMEIVKNSAK-------D---CYPAVQKTTLVIMERLQ-QVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp TTHH-------HHHHHHHHHHHHTCCS-------T---THHHHHHHHHHHHHHHH-HHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred hhHH-------HHHHHHHHHHHHHCch-------h---hHHHHHHHHHHHHHHHH-HHHHHHhccCChhhHHHHHHHHHH
Confidence 1110 1235555555554331 1 23455666776665554 21 1 12 346678
Q ss_pred HHHHHHHHHHhhh-hhhHhhHHHHHHHHHHhhhhhcC----cccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHH
Q 002084 706 ACRALSLAIQSSG-QHFVTLLPQVLDCLSTNFVSFQN----HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVR 780 (969)
Q Consensus 706 ~c~~l~~~~~~~~-~~~~p~l~~l~~~l~~~~~~~~~----~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~ 780 (969)
+|.++...++.+| ..+.|+++.++..+...+..... ....+.+++.++...|. .+.+.+..++..+...
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~~~l~~~---- 657 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG--EFLKYMEAFKPFLGIG---- 657 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH----
Confidence 8999999999999 88899999888888876653210 11245667777777765 3445555555433332
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhcc--CchhHHHHHHHHHHHHHhh
Q 002084 781 ALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTA--MHRGAALAAMSYLSCFLEE 853 (969)
Q Consensus 781 ~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~--~e~~~~~a~~~Fl~~li~~ 853 (969)
+.. .+++++....+..+..+.+..+..+. +.++.+++..+..+.. .++.....++..+..+...
T Consensus 658 -l~~----~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 658 -LKN----YAEYQVCLAAVGLVGDLCRALQSNII----PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA 723 (876)
T ss_dssp -HHH----CTTHHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred -HcC----cchHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHH
Confidence 221 24788999999999999988764332 3466677777777765 3456666777777776653
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.66 E-value=7.9e-05 Score=88.26 Aligned_cols=562 Identities=12% Similarity=0.050 Sum_probs=299.3
Q ss_pred hHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc---ChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCC
Q 002084 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (969)
Q Consensus 4 ~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~---s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~ 80 (969)
+....+..++..+- ++|+..|..|-+-|..+-. ....|.-....|.... ..+.++|..++..|..-...
T Consensus 7 ~~~~~i~~l~~~l~-s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~---d~~~~vr~~~~~~L~~~~~~---- 78 (588)
T 1b3u_A 7 DSLYPIAVLIDELR-NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI---YDEDEVLLALAEQLGTFTTL---- 78 (588)
T ss_dssp TSSHHHHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC---CCCHHHHHHHHHHHTTCSGG----
T ss_pred CCcCcHHHHHHHhh-cccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHhc----
Confidence 34556777777776 5788899999888876533 2344654444443221 12468999988888632221
Q ss_pred CChHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHchhcc---CCchHHHHHHHhhcccCCCcchHHHHHHHhhc
Q 002084 81 LQSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (969)
Q Consensus 81 l~~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~l~~~~---W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l 156 (969)
+.... ....++..+.... ..+..||...+.+|..++-..+. |+..++-+.....+. +.........++..+
T Consensus 79 ~~~~~---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~R~~a~~~l~~~ 153 (588)
T 1b3u_A 79 VGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD--WFTSRTSACGLFSVC 153 (588)
T ss_dssp GTSGG---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS--SHHHHHHHGGGHHHH
T ss_pred cCcHH---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH
Confidence 11111 1122333443332 35678999999999998876542 333333332222221 111223333444443
Q ss_pred hhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchh
Q 002084 157 PEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (969)
Q Consensus 157 ~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~ 236 (969)
.+-+ +... .+.++..+...+.. ++..++..+.+++..+.... +.+.
T Consensus 154 ~~~~----------~~~~-----------~~~l~~~l~~l~~d--------~~~~VR~~a~~~l~~l~~~~-----~~~~ 199 (588)
T 1b3u_A 154 YPRV----------SSAV-----------KAELRQYFRNLCSD--------DTPMVRRAAASKLGEFAKVL-----ELDN 199 (588)
T ss_dssp TTTS----------CHHH-----------HHHHHHHHHHHHTC--------SCHHHHHHHHHHHHHHHHTS-----CHHH
T ss_pred HHhc----------CHHH-----------HHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHh-----cHHh
Confidence 3321 2111 12344444443332 34678999999999988743 2222
Q ss_pred hcccchHHHHHhhcCCCC--cHHHHHHHHHHHHhcCCC--hhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHh
Q 002084 237 LAAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHEG--LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIG 312 (969)
Q Consensus 237 i~~~~ll~~~~~~L~~~~--~~~~a~~~l~ei~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~ 312 (969)
....+++.+...+.+++ .+..|++++..+.....+ ....++|.+.. ...+++.......++.+..++
T Consensus 200 -~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~--------~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 200 -VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ--------AAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp -HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHH--------HHTCSSHHHHHHHHHTHHHHH
T ss_pred -HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------HccCCCHHHHHHHHHHHHHHH
Confidence 23467888888887764 567788888776654321 11223332221 234455555555566666655
Q ss_pred hhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 002084 313 QAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLL 392 (969)
Q Consensus 313 e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 392 (969)
+...... ....+++.++.+...+ +.+|...+...+..+.+.+. .+. . ..+++..++..+..
T Consensus 271 ~~~~~~~-----~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~---~~~------~---~~~~~~~l~p~l~~ 331 (588)
T 1b3u_A 271 KAVGPEI-----TKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLS---ADC------R---ENVIMSQILPCIKE 331 (588)
T ss_dssp HHHCHHH-----HHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSC---TTT------H---HHHHHHTHHHHHHH
T ss_pred HHhCccc-----chhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhC---hhh------h---hhHHHHHHHHHHHH
Confidence 4331110 1124566666666665 56777777777777766532 110 0 01122223333322
Q ss_pred HccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHH---hhhhcCCCCCCChhHhHHHHHHHHhhhh
Q 002084 393 RAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVF---FGSWGSANVPIPWKEVETKLFALNVVSE 469 (969)
Q Consensus 393 k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~---~~~~~~~~~~~~W~~~Ea~Lf~l~~iae 469 (969)
.+. | .+ ...|......+..+...+|.+.....+. ..+.. ..++.-.++++-+++.+.+
T Consensus 332 ~l~---d----------~~--~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~----d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 332 LVS---D----------AN--QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK----DECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHT---C----------SC--HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT----CSCHHHHHHHHTTCHHHHH
T ss_pred Hhc---C----------CC--HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHHHH
Confidence 221 1 01 2567777767777666677653322222 22222 2357777788877777776
Q ss_pred ccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHH
Q 002084 470 VVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNAC 547 (969)
Q Consensus 470 ~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~~--~~~~A 547 (969)
.+..+.. .+.+...+..+...+..+ +|..+ +..++.++..+... .+.+.+++.++..+.++. ++..|
T Consensus 393 ~~~~~~~---~~~~lp~l~~~~~d~~~~------vr~~~-~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 393 VIGIRQL---SQSLLPAIVELAEDAKWR------VRLAI-IEYMPLLAGQLGVE-FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HSCHHHH---HHHHHHHHHHHHTCSSHH------HHHHH-HHHHHHHHHHHCGG-GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred hcCHHHH---HHHHHHHHHHHhcCCCch------HHHHH-HHHHHHHHHHcCHH-HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6542211 133333333333333322 56655 58898888766432 345678888889898754 89999
Q ss_pred HHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhh
Q 002084 548 ASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLI 627 (969)
Q Consensus 548 a~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~ 627 (969)
+.++..+++.++... ..+.++.....+. ..-+...|...+++++.+...++.+ .++..++.++. +.+
T Consensus 462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~-~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~----~~l 528 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW----AHATIIPKVLAMS-GDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVL----RMA 528 (588)
T ss_dssp HHHHHHHHHHHCHHH----HHHHTHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHH----HGG
T ss_pred HHHHHHHHHHhCchh----HHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHH----hhC
Confidence 999999998876532 2222222222211 1223567888888998887765432 23444443333 333
Q ss_pred cccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHH
Q 002084 628 DGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAAC 707 (969)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c 707 (969)
... ++..- ...+..++.+.+.++. + . ....+.|.+..+.. ..|.+|.+.+|
T Consensus 529 ~d~-------~~~Vr-------~~a~~~l~~l~~~~~~---------~-~--~~~~~~p~l~~l~~---d~d~~vr~~a~ 579 (588)
T 1b3u_A 529 GDP-------VANVR-------FNVAKSLQKIGPILDN---------S-T--LQSEVKPILEKLTQ---DQDVDVKYFAQ 579 (588)
T ss_dssp GCS-------CHHHH-------HHHHHHHHHHGGGSCH---------H-H--HHHHHHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCC-------CchHH-------HHHHHHHHHHHHHhch---------h-h--hHHHHHHHHHHHcC---CCchhHHHHHH
Confidence 211 11111 1234455555544331 1 1 12567788877543 36888999988
Q ss_pred HHHHH
Q 002084 708 RALSL 712 (969)
Q Consensus 708 ~~l~~ 712 (969)
..+..
T Consensus 580 ~al~~ 584 (588)
T 1b3u_A 580 EALTV 584 (588)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.61 E-value=0.00019 Score=93.04 Aligned_cols=508 Identities=11% Similarity=0.085 Sum_probs=268.2
Q ss_pred hhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcCCC-hhHHHHhhhhhhH
Q 002084 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG-LPQALLCRVPFLK 285 (969)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~~~-~~~~l~~~~~~l~ 285 (969)
+.+++..+..-+...+..... ..+. -....+++.+++.|.++ +.+..|+.++..+.....+ ....+++.++
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~-~~~~--~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll--- 92 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSI-KLDD--DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLC--- 92 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCC-SCCT--THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH---
T ss_pred CHhHHHHHHHHHHHHHccccc-CCCh--hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---
Confidence 456888888877765553211 1111 12345778888888765 4678899999888765432 1222333322
Q ss_pred HhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhc---ChhHHHHHHHHHhccc-CCCCCchhhhhhHHHHHHHHHHh
Q 002084 286 ELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA---SPEALALADALLSCVA-FPSEDWEIADSTLQFWSTLASYI 361 (969)
Q Consensus 286 ~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~---~~~~~~ll~~lL~~~~-~p~~d~~v~~~~~~FW~~l~e~l 361 (969)
..+.+++.......+..+..+++.....-..+ ......++..|+.+.. .+ +..+...+++.|..+.+..
T Consensus 93 -----~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~--~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 93 -----TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE--DVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp -----HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS--CHHHHHHHHHHHHHHHHHT
T ss_pred -----HHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHh
Confidence 13334444443344444444444332110000 0123467777777766 34 5678888999998887643
Q ss_pred hccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcH---HHHH
Q 002084 362 LGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA---TFIQ 438 (969)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~---~~l~ 438 (969)
. ..+.|++.+++..++..+.-| + ...|......+-.+....+.. .++.
T Consensus 166 ~--------------~~l~~~~~~ll~~l~~~L~~~-------------~--~~vR~~a~~al~~l~~~~~~~~~~~~l~ 216 (1230)
T 1u6g_C 166 G--------------GLLVNFHPSILTCLLPQLTSP-------------R--LAVRKRTIIALGHLVMSCGNIVFVDLIE 216 (1230)
T ss_dssp C--------------SSCTTTHHHHHHHHGGGGGCS-------------S--HHHHHHHHHHHHHHTTTC----CTTHHH
T ss_pred H--------------hHHHHHHHHHHHHHHHHHcCC-------------c--HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 123345566666666655311 1 256777666666665555432 2344
Q ss_pred HHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHH
Q 002084 439 KVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK 518 (969)
Q Consensus 439 ~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~ 518 (969)
.+...+... .++.....++-+++.+++.+...-. ..++.++..+......+... +|..+ +..++.++.
T Consensus 217 ~l~~~L~~~----~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~l~~~ll~~l~d~~~~------vR~~a-~~~l~~l~~ 284 (1230)
T 1u6g_C 217 HLLSELSKN----DSMSTTRTYIQCIAAISRQAGHRIG-EYLEKIIPLVVKFCNVDDDE------LREYC-IQAFESFVR 284 (1230)
T ss_dssp HHHHHHHHT----CSSCSCTTHHHHHHHHHHHSSGGGT-TSCTTHHHHHHHHHSSCCTT------THHHH-HHHHHHHHH
T ss_pred HHHHHhccC----CchhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHHH
Confidence 444444321 1244556677888888776653211 12355666544433332211 45444 467766655
Q ss_pred HHHhC-hhchHHHHHHHHHhccc-C--------------------------------------chhHHHHHHHHHHHHHh
Q 002084 519 WISAF-QTNARPLLLFLAAGISE-A--------------------------------------VSSNACASALRKICEDA 558 (969)
Q Consensus 519 wl~~~-p~~L~~~l~~l~~~l~~-~--------------------------------------~~~~~Aa~al~~lc~~c 558 (969)
.+... ..|++.+++.++..+.. | .++.+|+.++..++...
T Consensus 285 ~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~ 364 (1230)
T 1u6g_C 285 RCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 364 (1230)
T ss_dssp CTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTC
T ss_pred HChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc
Confidence 43221 23778888888776631 1 14667888888887622
Q ss_pred hcccCCCccHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHhccCCchH-------------HHHHHHHHHHHHHHHHH
Q 002084 559 SALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNKE-------------LKNNLLARLLSSSYEAI 623 (969)
Q Consensus 559 ~~~l~~~~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~ii~~lp~~~-------------~~~~~l~~ll~p~~~~l 623 (969)
.. .+.+.+..+...+.. ..-....|...+++++.++....... .-...+..++..++..+
T Consensus 365 ~~-----~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 439 (1230)
T 1u6g_C 365 HE-----MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKAL 439 (1230)
T ss_dssp CT-----THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHH
T ss_pred hh-----HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHH
Confidence 21 123333333333322 12235567788888888887543200 00123445555555555
Q ss_pred HhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHH
Q 002084 624 GKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLS 703 (969)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~ 703 (969)
.+.+... ++... .. ++..++.+.+.+... .. +.+.+++|.+...+.. -..+.++.
T Consensus 440 ~~~l~~~-------~~~vr----~~---~~~~L~~l~~~~~~~-------l~---~~l~~ll~~l~~~L~d-~~~~~~v~ 494 (1230)
T 1u6g_C 440 HKQMKEK-------SVKTR----QC---CFNMLTELVNVLPGA-------LT---QHIPVLVPGIIFSLND-KSSSSNLK 494 (1230)
T ss_dssp HHHTTCS-------CHHHH----HH---HHHHHHHHHHHSTTT-------TG---GGHHHHHHHHHHHTTC-SSSCHHHH
T ss_pred HHHhccC-------CHHHH----HH---HHHHHHHHHHHchhh-------hH---HHHHHHHHHHHHHHcC-CCCcchHH
Confidence 5544421 11110 12 233344444432211 11 2456778888887752 21235788
Q ss_pred HHHHHHHHHHHHhhhhh-hHhhHHHHHHHHHHhhhhhcCc----ccHHHHHHHHHHHhcC-----CCCcchhHHHHHHHH
Q 002084 704 TAACRALSLAIQSSGQH-FVTLLPQVLDCLSTNFVSFQNH----ECYIRTASVVIEEFGH-----KDEYGPLFVTTFERF 773 (969)
Q Consensus 704 e~~c~~l~~~~~~~~~~-~~p~l~~l~~~l~~~~~~~~~~----~~~L~l~~~li~~~g~-----~~~~~~~~~~l~~~l 773 (969)
+.++..+...+...++. +.|+++.++..+...+.. +. ...+..+..++..+|. ...+.+.+..++..+
T Consensus 495 ~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~l 572 (1230)
T 1u6g_C 495 IDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD--PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCT 572 (1230)
T ss_dssp HHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 89999999888776654 666666666666554432 22 1245677778888876 123344445555443
Q ss_pred hhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhh
Q 002084 774 SQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR 810 (969)
Q Consensus 774 ~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p 810 (969)
.. .+. ..+.++++.+..+..++.+..+.+
T Consensus 573 l~-----~l~---~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 573 IK-----RLK---AADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HH-----HHS---CSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HH-----HHh---ccCCCHHHHHHHHHHHHHHHHHhC
Confidence 33 222 125667788877777777777643
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.60 E-value=0.0001 Score=87.35 Aligned_cols=473 Identities=13% Similarity=0.043 Sum_probs=263.0
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcC--h-HHHH----HHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCC
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT--D-AAWE----IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s--~-~aW~----~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l 81 (969)
+..++..+..+.++..|+.|-+.|.++-.. + .-|. +...+..++ +..+|-.|+.++..-..+ +
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~------~~~~R~~a~~~l~~~~~~----~ 157 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD------WFTSRTSACGLFSVCYPR----V 157 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS------SHHHHHHHGGGHHHHTTT----S
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHh----c
Confidence 444455555567788899999888887653 1 1232 333333322 357888888888765432 4
Q ss_pred ChHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHchhcc---CCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084 82 QSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (969)
Q Consensus 82 ~~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~l~~~~---W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~ 157 (969)
++.. ++.++..+.... ..++.||...+.+|+.++-.... ++..++.+...++.. +.......+..|..+.
T Consensus 158 ~~~~----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 158 SSAV----KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE--QDSVRLLAVEACVNIA 231 (588)
T ss_dssp CHHH----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHH
T ss_pred CHHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH
Confidence 4443 444444444433 45688999999999988765441 345555555555431 1111122334343333
Q ss_pred hccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhh
Q 002084 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (969)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i 237 (969)
+.+. ... ..+.++.++...+.. ++..++..+.+++....... +.+.
T Consensus 232 ~~~~----------~~~----------~~~~~~~~l~~~~~d--------~~~~vR~~a~~~l~~l~~~~-----~~~~- 277 (588)
T 1b3u_A 232 QLLP----------QED----------LEALVMPTLRQAAED--------KSWRVRYMVADKFTELQKAV-----GPEI- 277 (588)
T ss_dssp HHSC----------HHH----------HHHHTHHHHHHHHTC--------SSHHHHHHHHHTHHHHHHHH-----CHHH-
T ss_pred HhCC----------HHH----------HHHHHHHHHHHHccC--------CCHHHHHHHHHHHHHHHHHh-----Cccc-
Confidence 3221 100 112344444443332 23568889999998877632 1221
Q ss_pred cccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcCCC------hhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHH
Q 002084 238 AAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG------LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (969)
Q Consensus 238 ~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~~~------~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~ 309 (969)
....+++.+.+.+.++ +.+..|+.++..+...... +...++|.+.. ...+.+.......+..+.
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~--------~l~d~~~~vR~~a~~~l~ 349 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE--------LVSDANQHVKSALASVIM 349 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH--------HHTCSCHHHHHHHHTTGG
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHH
Confidence 2345778888888765 4678888888888775432 12233333321 234445544444444444
Q ss_pred HHhhhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHH
Q 002084 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDA 389 (969)
Q Consensus 310 ~~~e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (969)
.+++...... ....++..++.+...+ +.+|...++..+..+.+.+ ..+ ...+ .++..
T Consensus 350 ~l~~~~~~~~-----~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~---~~~------~~~~-------~~lp~ 406 (588)
T 1b3u_A 350 GLSPILGKDN-----TIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNEVI---GIR------QLSQ-------SLLPA 406 (588)
T ss_dssp GGHHHHCHHH-----HHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHHHS---CHH------HHHH-------HHHHH
T ss_pred HHHHHhhHhH-----HHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHhc---CHH------HHHH-------HHHHH
Confidence 4433221110 1123455566666654 4567666666666655542 110 0112 22222
Q ss_pred HHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcH----HHHHHHHhhhhcCCCCCCChhHhHHHHHHHH
Q 002084 390 LLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA----TFIQKVFFGSWGSANVPIPWKEVETKLFALN 465 (969)
Q Consensus 390 l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~----~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~ 465 (969)
+..-+. + .+ ...|....+.+..+...+|.+ .++..+...+ ...+|.-.++++-+++
T Consensus 407 l~~~~~---d---~~---------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-----~d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 407 IVELAE---D---AK---------WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL-----VDHVYAIREAATSNLK 466 (588)
T ss_dssp HHHHHT---C---SS---------HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG-----GCSSHHHHHHHHHHHH
T ss_pred HHHHhc---C---CC---------chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHH
Confidence 222211 1 01 256778888888887777764 2333333333 2346888999999999
Q ss_pred hhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccC--ch
Q 002084 466 VVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VS 543 (969)
Q Consensus 466 ~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~--~~ 543 (969)
.+++.+..+. ..+.++..+..+..++.. .+|.++ +..+|.+++.+... .+++.+++.+...+.++ .+
T Consensus 467 ~l~~~~~~~~---~~~~llp~l~~~~~~~~~------~~R~~a-~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~V 535 (588)
T 1b3u_A 467 KLVEKFGKEW---AHATIIPKVLAMSGDPNY------LHRMTT-LFCINVLSEVCGQD-ITTKHMLPTVLRMAGDPVANV 535 (588)
T ss_dssp HHHHHHCHHH---HHHHTHHHHHHTTTCSCH------HHHHHH-HHHHHHHHHHHHHH-HHHHHTHHHHHHGGGCSCHHH
T ss_pred HHHHHhCchh---HHHHHHHHHHHHhhCCCH------HHHHHH-HHHHHHHHHhcCHH-HHHHHHHHHHHhhCCCCCchH
Confidence 9988765321 123444444444444432 256666 59999998877653 37788999999999875 48
Q ss_pred hHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 002084 544 SNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (969)
Q Consensus 544 ~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~i 598 (969)
+..+++++..+++..+... ..+.+......+. ..-+.+.|....++++.+
T Consensus 536 r~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~-~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDNST----LQSEVKPILEKLT-QDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHc-CCCchhHHHHHHHHHHHh
Confidence 9999999999987654432 1233444443332 233566777777777654
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.31 E-value=0.35 Score=54.39 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=78.5
Q ss_pred CCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC--hhchH
Q 002084 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF--QTNAR 528 (969)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~--p~~L~ 528 (969)
..+|....++.-+++.+++...+ . .++.++..+......+..+ +|.++ +..+|..++-.... ..+++
T Consensus 339 ~~~~~~r~~a~~~L~~l~~~~~~--~--~~~~~~~~l~~~l~~~~~~------~r~aa-l~~l~~l~~~~~~~~~~~~l~ 407 (462)
T 1ibr_B 339 DDDWNPCKAAGVCLMLLATCCED--D--IVPHVLPFIKEHIKNPDWR------YRDAA-VMAFGCILEGPEPSQLKPLVI 407 (462)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTT--T--HHHHHHHHHHHHTTCSSHH------HHHHH-HHHHHHTSSSSCTTTTCTTTT
T ss_pred cccchHHHHHHHHHHHHHHhccH--H--HHHHHHHHHHHHhcCCChH------HHHHH-HHHHHHHhcCCcHHHHHHHHH
Confidence 35699999999999999988762 2 1466777666554444322 56656 58999988632211 24678
Q ss_pred HHHHHHHHhcccC--chhHHHHHHHHHHHHHhhcccCCCccHHHHHH
Q 002084 529 PLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMW 573 (969)
Q Consensus 529 ~~l~~l~~~l~~~--~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~ 573 (969)
.+++.++..+.++ .++..|+.++.++|+.+...+..+.+++.++.
T Consensus 408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~ 454 (462)
T 1ibr_B 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (462)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 8999999999875 48999999999999999886522235544443
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.97 E-value=0.27 Score=57.67 Aligned_cols=460 Identities=13% Similarity=0.066 Sum_probs=217.5
Q ss_pred hccCCChHHHHHHHHHHHHHhc-ChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHHHHH
Q 002084 16 LNHDTESCNRVAANQWLVQFQQ-TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALL 94 (969)
Q Consensus 16 ly~~~d~~~~~~A~~~L~~~Q~-s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~~Ll 94 (969)
+..++|...|+-+--++..+-+ .|+--.++..-|..+= .+.++.+|-.|..+|-.-. .++....+...+.
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL--~~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l~ 127 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDC--EDPNPLIRALAVRTMGCIR-------VDKITEYLCEPLR 127 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGS--SSSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHHH
Confidence 4455677777777777777655 3544333332222211 0234677777766664221 3344444444444
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHchhc-cCC--chHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCC
Q 002084 95 VAAKRFSSGPPQLLTQICLALSALILRAV-EHG--KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNIS 171 (969)
Q Consensus 95 ~~l~~~~~~~~~v~~kL~~aLa~l~l~~~-~W~--~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~ 171 (969)
..+ ...++.||.+-+.++..++-..+ .++ .+++.+...+... ++......+..|..+.++-.+..... +.
T Consensus 128 ~~L---~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~~~--l~ 200 (591)
T 2vgl_B 128 KCL---KDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSNLLD--LN 200 (591)
T ss_dssp HHS---SCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCSCC--CH
T ss_pred HHc---CCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCccchh--cc
Confidence 333 24678999999999999887554 244 3556666666532 23333445555555554321100001 11
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcC
Q 002084 172 SAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQ 251 (969)
Q Consensus 172 ~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~ 251 (969)
+..+..+.+.+... ++-.+..+++++.. ++ |.+.-....+++.+...|.
T Consensus 201 ---------------~~~~~~Ll~~l~~~--------~~~~q~~il~~l~~---l~-----~~~~~~~~~~l~~l~~~l~ 249 (591)
T 2vgl_B 201 ---------------PQNINKLLTALNEC--------TEWGQIFILDCLSN---YN-----PKDDREAQSICERVTPRLS 249 (591)
T ss_dssp ---------------HHHHHHHHHHHHHC--------CHHHHHHHHHHHHT---SC-----CCSHHHHHHHHHHHTTCSC
T ss_pred ---------------HHHHHHHHHcCCCC--------CchHHHHHHHHHHH---hC-----CCChHHHHHHHHHHHHHHc
Confidence 11111111111211 12344556665532 22 1111112456777777776
Q ss_pred CC--CcHHHHHHHHHHHHhc---CCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhcChhH
Q 002084 252 VQ--SSFDVAIEVLVELVGR---HEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEA 326 (969)
Q Consensus 252 ~~--~~~~~a~~~l~ei~~~---~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~ 326 (969)
+. .+.-.|+.++..+... ..+..+.+..++.. .+. .+.+.|.+.-.--.+.+..++..+...+.
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~---~L~--~L~~~d~~vr~~aL~~l~~i~~~~p~~~~------ 318 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAP---PLV--TLLSGEPEVQYVALRNINLIVQKRPEILK------ 318 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHH---HHH--HHTTSCHHHHHHHHHHHHHHHHHCCSTTT------
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH---HHH--HHhcCCccHHHHHHHHHHHHHHhChHHHH------
Confidence 53 4456677777665431 22333333333322 111 11224443222222333333333322111
Q ss_pred HHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCC
Q 002084 327 LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM 406 (969)
Q Consensus 327 ~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~ 406 (969)
..+..+ .|.... +..|-..+++.|+.+.+. . ... .++..+...+. +
T Consensus 319 -~~~~~~-~~~~~d--~~~Ir~~al~~L~~l~~~-----~-----------nv~----~iv~~L~~~l~---~------- 364 (591)
T 2vgl_B 319 -QEIKVF-FVKYND--PIYVKLEKLDIMIRLASQ-----A-----------NIA----QVLAELKEYAT---E------- 364 (591)
T ss_dssp -TCTTTT-SCCTTS--CHHHHHHHHHHHHHTCCS-----S-----------THH----HHHHHHHHHTT---S-------
T ss_pred -HHHHhh-eeccCC--hHHHHHHHHHHHHHHCCh-----h-----------hHH----HHHHHHHHHHh---c-------
Confidence 111111 122111 244556778777664421 0 111 22333333221 1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHH
Q 002084 407 VDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIM 484 (969)
Q Consensus 407 ~~e~d~f~~fR~~~~d~l~~~~~ilg~--~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~ 484 (969)
.| .+||+.+...+..++.-..+ +.++..+...+.. ..+|-.-|+ +.+++.+....++. .. ..+.
T Consensus 365 ---~d--~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~----~~~~v~~e~-i~~l~~ii~~~p~~-~~---~~v~ 430 (591)
T 2vgl_B 365 ---VD--VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT----KVNYVVQEA-IVVIRDIFRKYPNK-YE---SIIA 430 (591)
T ss_dssp ---SC--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----CCHHHHHHH-HHHHHHHHHHSCSS-CC---TTHH
T ss_pred ---CC--HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcc----cchHHHHHH-HHHHHHHHHHCcch-HH---HHHH
Confidence 01 36887777666666543222 2355555544432 234666666 45666665544421 11 1233
Q ss_pred HHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhccc
Q 002084 485 QLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI 562 (969)
Q Consensus 485 ~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l 562 (969)
.+...+.....+ .++..+ +|++|+|++++...+ .++..+...+.+ +.++..+..|+.++...+...
T Consensus 431 ~L~~~l~~~~~~------~~~~~~-~wilGey~~~~~~~~----~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~- 498 (591)
T 2vgl_B 431 TLCENLDSLDEP------DARAAM-IWIVGEYAERIDNAD----ELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE- 498 (591)
T ss_dssp HHHHTTTTCCSH------HHHHHH-HHHHHTTCTTCTTHH----HHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-
T ss_pred HHHHHHHhccCH------HHHHHH-HHHHHcccccccCHH----HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-
Confidence 333434322221 145544 599999999876533 455556655543 458888889999998654321
Q ss_pred CCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 002084 563 DEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597 (969)
Q Consensus 563 ~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ 597 (969)
..+.+..+.+.......+.+.|.+-++..+.
T Consensus 499 ----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 499 ----TQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp ----THHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 1234444444332233456777776665553
No 23
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.052 Score=55.88 Aligned_cols=157 Identities=13% Similarity=0.110 Sum_probs=104.6
Q ss_pred CCChhHhHHHHHHHHh-hhhccccCCc-ccchhHHHHHHHHhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHH-h-Ch-
Q 002084 451 PIPWKEVETKLFALNV-VSEVVLQEGQ-AFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWIS-A-FQ- 524 (969)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~-iae~~~~~~~-~~~l~~i~~ll~~l~-~~~~~~~~~~~~v~~~t~~~lig~ys~wl~-~-~p- 524 (969)
+.+|.+.-+++-.+.. +.+.++.-.. ...+..+++.+.... ..+.. .+|..+ +..+|.+++-+. . -.
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~------~v~~~A-~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI------QAVALA-AQSVELICDKLKTPGFSK 99 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH------HHHHHH-HHHHHHHHHHHCTTTSCH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH------HHHHHH-HHHHHHHHHhcccccccH
Confidence 4679999999999999 8765442110 111355666554433 44432 256655 599999999886 3 33
Q ss_pred hchHHHHHHHHHhcccC--chhHHHHHHHHHHHHHhhcccCCCccHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002084 525 TNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGS 601 (969)
Q Consensus 525 ~~L~~~l~~l~~~l~~~--~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (969)
.|...+++.++..+.++ .++.+|..|+..+|+.|...... .+++.++ .+...+... +...|+..+..++.++..
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH
Confidence 68999999999999985 48899999999999998663311 1244444 444444322 568899999999999988
Q ss_pred CCch-HHHHHHH-HHHHH
Q 002084 602 VSNK-ELKNNLL-ARLLS 617 (969)
Q Consensus 602 lp~~-~~~~~~l-~~ll~ 617 (969)
.+.. +....++ ..++.
T Consensus 177 ~~~~~~~l~~~l~~~iip 194 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVP 194 (249)
T ss_dssp CCSCSHHHHHHHTTTHHH
T ss_pred cCCcchhHHHHHHHHHHH
Confidence 7642 2233444 44443
No 24
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.39 E-value=1.4 Score=55.22 Aligned_cols=298 Identities=9% Similarity=0.049 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhhHHHHHh-ChhchHHHHHHHHHhcc----cCchhHHHHHHHHHHHHHhhcccCCCccHHHHH-HHHHHH
Q 002084 505 VYRSLADVIGSYSKWISA-FQTNARPLLLFLAAGIS----EAVSSNACASALRKICEDASALIDEPSNLEILM-WIGEAL 578 (969)
Q Consensus 505 ~~~t~~~lig~ys~wl~~-~p~~L~~~l~~l~~~l~----~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~-~~~~~l 578 (969)
+.++ +..+|..++-+.. ...+++.+++ ++..+. +|.++..|+.++.++|+-...+. .+++.++ .+...+
T Consensus 481 ~eaa-l~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~---~~l~~vl~~l~~~l 555 (971)
T 2x1g_F 481 LEAC-IYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP---AYIPPAINLLVRGL 555 (971)
T ss_dssp HHHH-HHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------CHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHh
Confidence 3434 4678888775543 2357788888 555555 45689999999999998776532 2444333 344444
Q ss_pred HhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhh
Q 002084 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGT 658 (969)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~ 658 (969)
+ ...+.....++..++...+ ..+...+.++++.+.+++.... .+... -...+.+++.
T Consensus 556 -~----~~v~~~A~~al~~l~~~~~------~~l~p~~~~ll~~l~~~l~~~~-----~~~~~-------~~~~~~ai~~ 612 (971)
T 2x1g_F 556 -N----SSMSAQATLGLKELCRDCQ------LQLKPYADPLLNACHASLNTGR-----MKNSD-------SVRLMFSIGK 612 (971)
T ss_dssp -H----SSCHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHSTT-----SCHHH-------HHHHHHHHHH
T ss_pred -C----hHHHHHHHHHHHHHHHHHH------HhccccHHHHHHHHHHHHcCCC-----CChHH-------HHHHHHHHHH
Confidence 2 3446666777777775543 2233444555566666655421 01111 1234556666
Q ss_pred hcccccccCCCCCCCCchHHHHHHhHHHH----HHHHHHhhhccchHHHH---HHHHHHHHHHHhhhh------------
Q 002084 659 VFSHLPVPLPTNPAGDDPIFALLRVFWPM----LEKLFRSEHMENGNLST---AACRALSLAIQSSGQ------------ 719 (969)
Q Consensus 659 i~~~l~~~~~~~~~~~~p~~~~~~~i~~~----l~~il~~~~~~~~~v~e---~~c~~l~~~~~~~~~------------ 719 (969)
++..+. + +-..+.++.+++. +.+++. .-..+.+-.. .+-..+..+++.++.
T Consensus 613 i~~~~~-~--------~~~~~~~~~ll~~l~~~l~~~~~-~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~ 682 (971)
T 2x1g_F 613 LMSLLR-P--------EEIPKYLDIIVSPCFEELQAICQ-ADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIV 682 (971)
T ss_dssp HHHTSC-T--------THHHHHHHHHHHHHHHHHHHHHT-C---CHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHhCC-H--------HHHHHHHHHHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCC
Confidence 554332 1 1122334443333 333332 1110221111 233344555555432
Q ss_pred -hhHhhHHHHHHHHHHhhhhhcCccc----HHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcH
Q 002084 720 -HFVTLLPQVLDCLSTNFVSFQNHEC----YIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDL 794 (969)
Q Consensus 720 -~~~p~l~~l~~~l~~~~~~~~~~~~----~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl 794 (969)
.+.++.+.+++.+...+......+. ...+.+.++..+|.+ +.+.+..+++.+... + ..++.
T Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~--~~p~l~~~~~~l~~~-----~------~~~~~- 748 (971)
T 2x1g_F 683 QPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS--FQPMLQDLCLFIVAS-----F------QTRCC- 748 (971)
T ss_dssp -CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHH-----C------C--CC-
T ss_pred CchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh--ccccHHHHHHHHHHH-----H------hcCCc-
Confidence 2344445455544443332211112 244666777778763 445555555433321 1 22222
Q ss_pred HHHHHHHHHHHHHhhhHH--HHhccccchHHHHHHHHHhhcc-------CchhHHHHHHHHHHHHHhhhh
Q 002084 795 VEAYTNFASTFVRTSRKE--VLAASGALLEVSFQKAAICCTA-------MHRGAALAAMSYLSCFLEECL 855 (969)
Q Consensus 795 ~~~~f~l~~~~l~~~p~~--ll~~~~~~l~~i~~~~l~~l~~-------~e~~~~~a~~~Fl~~li~~~~ 855 (969)
..++++++.+++..... ....-...+..++...+..+.. .+++..++.+.|+..++....
T Consensus 749 -~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p 817 (971)
T 2x1g_F 749 -APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817 (971)
T ss_dssp -HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG
T ss_pred -hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCc
Confidence 45888888888754321 0000002334444444433332 367888999999988886543
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.26 E-value=0.12 Score=52.79 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=100.2
Q ss_pred CCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-hhchH
Q 002084 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNAR 528 (969)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~-~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~-p~~L~ 528 (969)
+.+|....+++..|..+.+..+.-.. ..+..++..+..+. ..+.. .+|..+ +..+|.++.-+... ..|..
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~-~~~~~i~~~L~~~l~kd~~~------~V~~~a-~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLEN-GEYGALVSALKKVITKDSNV------VLVAMA-GKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCC-CCCHHHHHHHHHHHHHCSCH------HHHHHH-HHHHHHHHHHHGGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCC-CCHHHHHHHHHHHhccCCCH------HHHHHH-HHHHHHHHHHHhhhHHHHHH
Confidence 46799999999999998776432111 11356666555443 23332 256655 59999999766542 25888
Q ss_pred HHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHhccCCch
Q 002084 529 PLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (969)
Q Consensus 529 ~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~ 605 (969)
.+++.++..+.++. ++.+|+.|+..++..+. ++.++ .+...+. .-+...|...+..++.++....++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~ll~~l~~~l~--~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--------LEAQQESIVESLS--NKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999865 88999999999987532 22222 2233322 225778999999999998887543
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002084 606 ELKNNLLARLLSSSYEA 622 (969)
Q Consensus 606 ~~~~~~l~~ll~p~~~~ 622 (969)
.....++..++..+...
T Consensus 168 ~~~~~~l~~l~p~l~~~ 184 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKT 184 (242)
T ss_dssp GCCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH
Confidence 22245565655444433
No 26
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.74 E-value=1.6 Score=54.36 Aligned_cols=311 Identities=11% Similarity=0.015 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhhHHHHHh--ChhchHHHHHHHHHhccc-----Cc--hhHHHHHHHHHHHHHhhcccCCCccHHHHH-HH
Q 002084 505 VYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISE-----AV--SSNACASALRKICEDASALIDEPSNLEILM-WI 574 (969)
Q Consensus 505 ~~~t~~~lig~ys~wl~~--~p~~L~~~l~~l~~~l~~-----~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~-~~ 574 (969)
+-++ ++.+|+.++=... ...+++.++++|++-+.+ +. ++..++.++.++|+=.+.+ |.+++.++ .+
T Consensus 470 ~EA~-~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~---~~~L~~vl~~L 545 (1023)
T 4hat_C 470 INTL-SWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---WNFLRTVILKL 545 (1023)
T ss_dssp HHHH-HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC---HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHH
Confidence 4444 5899998764322 335889999998876652 32 5566778888888776542 22333332 23
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHH----HHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHH
Q 002084 575 GEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNN----LLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSAT 650 (969)
Q Consensus 575 ~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~----~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~ 650 (969)
.+.+... .+........++..+.+.-... ... .+...+.++++.+.++.... ++. ...
T Consensus 546 ~~~l~~~--~~~v~~~A~~al~~l~~~c~~~--l~~~~~~e~~p~~~~il~~l~~~~~~l-------~~~-------~~~ 607 (1023)
T 4hat_C 546 FEFMHET--HEGVQDMACDTFIKIVQKCKYH--FVIQQPRESEPFIQTIIRDIQKTTADL-------QPQ-------QVH 607 (1023)
T ss_dssp HHHTTCS--CHHHHHHHHHHHHHHHHHHTHH--HHSCCTTCSSCHHHHHHHTHHHHHTTS-------CHH-------HHH
T ss_pred HHHhhcC--CHHHHHHHHHHHHHHHHHHHHH--hhccCCCCCchhHHHHHHHHHHHHHhC-------CHH-------HHH
Confidence 3332111 1233444455555554432110 000 00113334444444444321 111 123
Q ss_pred HHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHh---hhc------cchHHHHHH---HHHHHHHHHhhh
Q 002084 651 RGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS---EHM------ENGNLSTAA---CRALSLAIQSSG 718 (969)
Q Consensus 651 ~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~---~~~------~~~~v~e~~---c~~l~~~~~~~~ 718 (969)
...+.++.+.+.+... .-....++++++.+.....+ ... .|.+.+..+ ++++......+|
T Consensus 608 ~lyeai~~vi~~~~~~--------~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg 679 (1023)
T 4hat_C 608 TFYKACGIIISEERSV--------AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG 679 (1023)
T ss_dssp HHHHHHHHHHTTCCSH--------HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCCH--------hhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777664421 00122334444333332221 111 233344444 445555667788
Q ss_pred hhhHhhHHHHHHHHHHhhhhhcC---------------ccc----------HHHHHHHHHHHhcCCCCc-chhHHHHHHH
Q 002084 719 QHFVTLLPQVLDCLSTNFVSFQN---------------HEC----------YIRTASVVIEEFGHKDEY-GPLFVTTFER 772 (969)
Q Consensus 719 ~~~~p~l~~l~~~l~~~~~~~~~---------------~~~----------~L~l~~~li~~~g~~~~~-~~~~~~l~~~ 772 (969)
..+.|.+.++...+...|..... .+. .|.++...+..-.+.+.. ...+..+++.
T Consensus 680 ~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~ 759 (1023)
T 4hat_C 680 ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNA 759 (1023)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHH
Confidence 88888888877777766553311 000 011112222211110000 0112223333
Q ss_pred HhhHHHHHHhhcCCCCCCCCcHH-HHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhc---cCchhHHHHHHHHHH
Q 002084 773 FSQAASVRALNSSYICDQEPDLV-EAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT---AMHRGAALAAMSYLS 848 (969)
Q Consensus 773 l~~~~~l~~l~~~~~~~~~pDl~-~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~---~~e~~~~~a~~~Fl~ 848 (969)
+..-+ . .+.|+.. -+++.+++.++++....+.+.-+..++.+|.+++.-++ ..+|+....-.+++.
T Consensus 760 vl~dY-----~-----~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~ 829 (1023)
T 4hat_C 760 VLEDY-----M-----NNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLK 829 (1023)
T ss_dssp HHHHH-----H-----HSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHH
T ss_pred HHHHH-----H-----hCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 22222 1 2334433 24667777777766543332212467788888887665 357888888888888
Q ss_pred HHHhhhh
Q 002084 849 CFLEECL 855 (969)
Q Consensus 849 ~li~~~~ 855 (969)
.++..+.
T Consensus 830 ~~~~~~f 836 (1023)
T 4hat_C 830 VINEKSF 836 (1023)
T ss_dssp HHHHHCT
T ss_pred HHHHHCh
Confidence 8876643
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.53 E-value=0.45 Score=53.38 Aligned_cols=335 Identities=11% Similarity=0.007 Sum_probs=163.8
Q ss_pred hhhhHHHHHHHHHHHHHccccccccchhhccc-chHHHHHhhcCCC---CcHHHHHHHHHHHHhcCCChhHHHH-hhhhh
Q 002084 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPF 283 (969)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~-~ll~~~~~~L~~~---~~~~~a~~~l~ei~~~~~~~~~~l~-~~~~~ 283 (969)
+..++..++.++..-+.... .-+...+... .+++.+.+.|.++ +....|+.++..+.....+....+. ...+
T Consensus 33 ~~~~r~~A~~~L~~l~~~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i- 109 (450)
T 2jdq_A 33 SPEQQLSATQKFRKLLSKEP--NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV- 109 (450)
T ss_dssp CHHHHHHHHHHHHHHHHSSS--SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH-
T ss_pred CHHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH-
Confidence 35688899999988765221 1121223334 7899999888765 4567888999888764322222221 1111
Q ss_pred hHHhhhhhhhccCchhHHhhHHHHHHHHhhhh---hHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHH
Q 002084 284 LKELLLLPALTDGDEKVIGGLACLMSEIGQAA---PSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASY 360 (969)
Q Consensus 284 l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~---~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~ 360 (969)
+.+. ..+.+++.+....-+..+..++... ...+.+ ...++.|+.+..... +.++...+......++..
T Consensus 110 --~~L~-~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-----~~~i~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 110 --PIFI-ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-----CNILPPLLQLFSKQN-RLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp --HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTCHHHHHHHTTSCC-CHHHHHHHHHHHHHHHCC
T ss_pred --HHHH-HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-----CCCHHHHHHHhcCCC-CHHHHHHHHHHHHHHhCC
Confidence 1111 2334556666555666666665532 111111 123555556555421 456777777666666532
Q ss_pred hhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCc-------
Q 002084 361 ILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS------- 433 (969)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~------- 433 (969)
- +... ..... ..++..++..+. + + + .+.|......+..++..-..
T Consensus 181 ~---~~~~------~~~~~----~~~l~~L~~~l~---~--------~--~--~~v~~~a~~~L~~l~~~~~~~~~~~~~ 232 (450)
T 2jdq_A 181 K---SPPP------EFAKV----SPCLNVLSWLLF---V--------S--D--TDVLADACWALSYLSDGPNDKIQAVID 232 (450)
T ss_dssp S---SSCC------CGGGT----GGGHHHHHHHTT---C--------C--C--HHHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred C---CCCC------CHHHH----HHHHHHHHHHHc---c--------C--C--HHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 1 0100 00111 222333333332 0 0 1 24455555555555421100
Q ss_pred HHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 002084 434 ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI 513 (969)
Q Consensus 434 ~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~li 513 (969)
...+..++..+ ...+|...+.++.+++.++...........-..++..+..+..++... +|..+ ++.+
T Consensus 233 ~~~i~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~------vr~~a-~~~L 300 (450)
T 2jdq_A 233 AGVCRRLVELL-----MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKES------IKKEA-CWTI 300 (450)
T ss_dssp TTTHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHH------HHHHH-HHHH
T ss_pred cCcHHHHHHHH-----CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHH------HHHHH-HHHH
Confidence 01122233222 235699999999999998765331000000012333333333344322 55555 4888
Q ss_pred HhhHHHHHhChh-ch-HHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhc-c---cCCCccHHHHHHHHHHHHhcCCCh
Q 002084 514 GSYSKWISAFQT-NA-RPLLLFLAAGISE--AVSSNACASALRKICEDASA-L---IDEPSNLEILMWIGEALEKRHLPL 585 (969)
Q Consensus 514 g~ys~wl~~~p~-~L-~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~-~---l~~~~~~~~l~~~~~~l~~~~l~~ 585 (969)
|..+..-..+-+ .+ ..+++.|+..+.+ +.++..|+.++.++|..+.. . +.....++.|..+. . .-+.
T Consensus 301 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~--~~~~ 375 (450)
T 2jdq_A 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL---T--VMDS 375 (450)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG---G--SSCH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh---c--CCCH
Confidence 887742111111 11 1455566666654 45899999999999976321 1 10001222222222 1 1145
Q ss_pred hhHHHHHHHHHHHhc
Q 002084 586 EDEEEVVGAISLILG 600 (969)
Q Consensus 586 ~~~~~l~eai~~ii~ 600 (969)
+.+...+.+++.++.
T Consensus 376 ~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 376 KIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666777776655
No 28
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.11 E-value=1.4 Score=55.55 Aligned_cols=394 Identities=12% Similarity=0.032 Sum_probs=181.7
Q ss_pred HHHHHHHHHHhhHHHHHhC--hhchHHHHHHHHHhcc-------cCchhHHHHHHHHHHHHHhhcccCCCccHHHHHH-H
Q 002084 505 VYRSLADVIGSYSKWISAF--QTNARPLLLFLAAGIS-------EAVSSNACASALRKICEDASALIDEPSNLEILMW-I 574 (969)
Q Consensus 505 ~~~t~~~lig~ys~wl~~~--p~~L~~~l~~l~~~l~-------~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~-~ 574 (969)
+-++ ++.+|+.++-+... ..+++.+++++..-.. +|.++..++.++.++|+-.+.+ |.+++.++. +
T Consensus 470 ~eaa-l~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~---~~~l~~vl~~l 545 (1049)
T 3m1i_C 470 INTL-SWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---WNFLRTVILKL 545 (1049)
T ss_dssp HHHH-HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC---HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHH
Confidence 4434 58888887643322 3468888888876221 2334555777777777665542 223332222 2
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHH----HHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHH
Q 002084 575 GEALEKRHLPLEDEEEVVGAISLILGSVSNKELKN----NLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSAT 650 (969)
Q Consensus 575 ~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~----~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~ 650 (969)
.+.+.. -+...+.....++..++...+. . .. ..+...+.++++.+.+++... ++.. ..
T Consensus 546 l~~l~~--~~~~V~~~A~~al~~l~~~~~~-~-l~~~~~~~~~p~~~~il~~l~~~~~~~-------~~~~-------~~ 607 (1049)
T 3m1i_C 546 FEFMHE--THEGVQDMACDTFIKIVQKCKY-H-FVIQQPRESEPFIQTIIRDIQKTTADL-------QPQQ-------VH 607 (1049)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHTH-H-HHSCCTTCSSCHHHHHHHTHHHHHTTS-------CHHH-------HH
T ss_pred HHHhcC--CCHHHHHHHHHHHHHHHHHHHH-H-hhcccCCCCCcHHHHHHHHHHHHHHhC-------CHHH-------HH
Confidence 232211 1245566666677777664321 1 11 000123444555555555431 1111 12
Q ss_pred HHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHH----HHHHh--h---hccchHHH---HHHHHHHHHHHHhhh
Q 002084 651 RGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLE----KLFRS--E---HMENGNLS---TAACRALSLAIQSSG 718 (969)
Q Consensus 651 ~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~----~il~~--~---~~~~~~v~---e~~c~~l~~~~~~~~ 718 (969)
...++++.+++..+. .+-..+.++.+++.+. .++.. . ...|.+.+ -.++.++..+.+.+|
T Consensus 608 ~~~eai~~ii~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~ 679 (1049)
T 3m1i_C 608 TFYKACGIIISEERS--------VAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG 679 (1049)
T ss_dssp HHHHHHHHHHHTCCS--------HHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666665544321 0112233444333322 22221 0 01133222 244667777788888
Q ss_pred hhhHhhHHHHHHHHHHhhhhh-----------c----Cccc------HHHHHHHHHHHhcCCCCcc-----hhHHHHHHH
Q 002084 719 QHFVTLLPQVLDCLSTNFVSF-----------Q----NHEC------YIRTASVVIEEFGHKDEYG-----PLFVTTFER 772 (969)
Q Consensus 719 ~~~~p~l~~l~~~l~~~~~~~-----------~----~~~~------~L~l~~~li~~~g~~~~~~-----~~~~~l~~~ 772 (969)
..+.|.++.+...+...|... + .++. +...+..++..|..+.... +.+..+++.
T Consensus 680 ~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ 759 (1049)
T 3m1i_C 680 ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNA 759 (1049)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 888887776555444333321 0 0111 0111222333333221111 111222222
Q ss_pred HhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhc---cCchhHHHHHHHHHHH
Q 002084 773 FSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT---AMHRGAALAAMSYLSC 849 (969)
Q Consensus 773 l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~---~~e~~~~~a~~~Fl~~ 849 (969)
+. ..+++. .... .| ..++.+++.++.+.+..+-+.-+..++.++.+++..+. ..+++...+...|+..
T Consensus 760 ll-----~~~~~~-~~~~-~~--~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~ 830 (1049)
T 3m1i_C 760 VL-----EDYMNN-VPDA-RD--AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKV 830 (1049)
T ss_dssp HH-----HHHHHS-CGGG-CC--THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHH
T ss_pred HH-----HHHHhC-Cccc-cc--HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHH
Confidence 22 222210 0010 11 45777788877776533221101345556666555453 3578889999999999
Q ss_pred HHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccccccccC
Q 002084 850 FLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILS 929 (969)
Q Consensus 850 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~~~~~~~~~~~~~~~~ 929 (969)
++..+... +-..-...-..++...+.+++ +..|.....-...+..+.... +....
T Consensus 831 i~~~~~~~----------------l~~~~~~~~~~v~~~~~~al~-~~~~~~~~~~l~~l~~l~~~~--------~~~~~ 885 (1049)
T 3m1i_C 831 INEKSFAA----------------FLELPPAAFKLFVDAICWAFK-HNNRDVEVNGLQIALDLVKNI--------ERMGN 885 (1049)
T ss_dssp HHHHCTHH----------------HHHSCHHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHHHHHH--------HHSCS
T ss_pred HHHhCHHH----------------HHcCCHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHHHHHH--------HhcCC
Confidence 88653321 100000112456677777775 556666666666666666321 10012
Q ss_pred hHHHHHHHHHHHhhhccccccceeeeccCCcee
Q 002084 930 WESLQGWLHSAVSLFLILIGFGLQLQTHPSGFL 962 (969)
Q Consensus 930 ~~~~~~Wl~~~l~~~~~~~~~~~~~~~~~~~~~ 962 (969)
+.....-..+-...+...--.++....|+++|+
T Consensus 886 ~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~ 918 (1049)
T 3m1i_C 886 VPFANEFHKNYFFIFVSETFFVLTDSDHKSGFS 918 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHH
Confidence 223333344444444444445555556776664
No 29
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.98 E-value=7.3 Score=45.35 Aligned_cols=413 Identities=11% Similarity=0.054 Sum_probs=196.7
Q ss_pred ccCCChHHHHHHHHHHHHHhcChHHHHH----HHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHHH
Q 002084 17 NHDTESCNRVAANQWLVQFQQTDAAWEI----ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNA 92 (969)
Q Consensus 17 y~~~d~~~~~~A~~~L~~~Q~s~~aW~~----~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~~ 92 (969)
..++|+..|..|-..|..+- +++.+.. ...+|.++ ++.||.-|+..+..-.+.+-+.++. ..
T Consensus 95 L~~~n~~ir~~AL~~L~~i~-~~~~~~~l~~~l~~~L~d~------~~~VRk~A~~al~~i~~~~p~~~~~-------~~ 160 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCIR-VDKITEYLCEPLRKCLKDE------DPYVRKTAAVCVAKLHDINAQMVED-------QG 160 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTCC-SGGGHHHHHHHHHHHSSCS------CHHHHHHHHHHHHHHHHSSCCCHHH-------HH
T ss_pred cCCCCHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHHHhhChhhccc-------cc
Confidence 44688899999988888875 6777766 55666543 4799999999998766643222211 12
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHHHchhc-c-CC----chHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccc
Q 002084 93 LLVAAKRF-SSGPPQLLTQICLALSALILRAV-E-HG----KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (969)
Q Consensus 93 Ll~~l~~~-~~~~~~v~~kL~~aLa~l~l~~~-~-W~----~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~ 165 (969)
++..+... ...++.|+..-..+|..+.-..+ . +- ..+..++..+... ++.....++.++..+..
T Consensus 161 ~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~--~~~~q~~il~~l~~l~~------- 231 (591)
T 2vgl_B 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC--TEWGQIFILDCLSNYNP------- 231 (591)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHTSCC-------
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC--CchHHHHHHHHHHHhCC-------
Confidence 33344332 24567788877777777765433 1 22 2355566665432 22222234444443321
Q ss_pred cccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhc--ccchH
Q 002084 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA--AHPLL 243 (969)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~--~~~ll 243 (969)
.+.. ....+++.+...+.+ .+..++..+.+|+........ -+.+.+. ...+.
T Consensus 232 ----~~~~-----------~~~~~l~~l~~~l~~--------~~~~V~~ea~~~i~~l~~~~~---~~~~~~~~~~~~~~ 285 (591)
T 2vgl_B 232 ----KDDR-----------EAQSICERVTPRLSH--------ANSAVVLSAVKVLMKFLELLP---KDSDYYNMLLKKLA 285 (591)
T ss_dssp ----CSHH-----------HHHHHHHHHTTCSCS--------STTHHHHHHHHHHHHSCCSCC---BTTBSHHHHHHHTH
T ss_pred ----CChH-----------HHHHHHHHHHHHHcC--------CChHHHHHHHHHHHHHhhccC---CCHHHHHHHHHHHH
Confidence 0111 123344444444333 234566666666554432100 0111111 11233
Q ss_pred HHHHhhc-CCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhc
Q 002084 244 NFVFNSL-QVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA 322 (969)
Q Consensus 244 ~~~~~~L-~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~ 322 (969)
+.+...+ .++++.-.|++.+..+.....+... +.+ . .+. ...+++....+.-+.++..++ +
T Consensus 286 ~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~---~~~---~-~~~--~~~~d~~~Ir~~al~~L~~l~---------~ 347 (591)
T 2vgl_B 286 PPLVTLLSGEPEVQYVALRNINLIVQKRPEILK---QEI---K-VFF--VKYNDPIYVKLEKLDIMIRLA---------S 347 (591)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTT---TCT---T-TTS--CCTTSCHHHHHHHHHHHHHTC---------C
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHhChHHHH---HHH---H-hhe--eccCChHHHHHHHHHHHHHHC---------C
Confidence 3333222 3456778888888888776533211 111 0 111 112333332222223333322 1
Q ss_pred ChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCC
Q 002084 323 SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN 402 (969)
Q Consensus 323 ~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~ 402 (969)
......++.-|+.+.... |.++...+..--..++ ..+.+.....++.++.-+..+
T Consensus 348 ~~nv~~iv~~L~~~l~~~--d~~~r~~~v~aI~~la------------------~~~~~~~~~~v~~Ll~ll~~~----- 402 (591)
T 2vgl_B 348 QANIAQVLAELKEYATEV--DVDFVRKAVRAIGRCA------------------IKVEQSAERCVSTLLDLIQTK----- 402 (591)
T ss_dssp SSTHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHTC-----
T ss_pred hhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH------------------HhChhHHHHHHHHHHHHHccc-----
Confidence 223345566666655543 4444333332211111 223344445555555544311
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccch
Q 002084 403 DDGMVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF 480 (969)
Q Consensus 403 ~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~--~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l 480 (969)
++ .-|.++...+.++..-... +..+..+...+. ....-....+++|++|-.++.+.. .
T Consensus 403 --------~~--~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~----~~~~~~~~~~~~wilGey~~~~~~--~---- 462 (591)
T 2vgl_B 403 --------VN--YVVQEAIVVIRDIFRKYPNKYESIIATLCENLD----SLDEPDARAAMIWIVGEYAERIDN--A---- 462 (591)
T ss_dssp --------CH--HHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTT----TCCSHHHHHHHHHHHHTTCTTCTT--H----
T ss_pred --------ch--HHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHH----hccCHHHHHHHHHHHHcccccccC--H----
Confidence 01 2233333344444322111 123344443332 122345578899999988776642 1
Q ss_pred hHHHH-HHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhc-c---cCchhHHHHHHHH
Q 002084 481 SVIMQ-LVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI-S---EAVSSNACASALR 552 (969)
Q Consensus 481 ~~i~~-ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l-~---~~~~~~~Aa~al~ 552 (969)
+.++. ++..+...+. .+|. .++..+.+.+.++|+...+.+..++... . +++++.+|....+
T Consensus 463 ~~~l~~l~~~~~~~~~-------~vr~----~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 463 DELLESFLEGFHDEST-------QVQL----TLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHHHSTTCSSSCH-------HHHH----HHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccCCH-------HHHH----HHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 33333 3333333222 1443 4455556666677876656666666543 2 3468888775544
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.76 E-value=1 Score=51.84 Aligned_cols=330 Identities=10% Similarity=-0.031 Sum_probs=163.7
Q ss_pred hhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC---CcHHHHHHHHHHHHhcCCChhHHHH-hhhhhh
Q 002084 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPFL 284 (969)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~---~~~~~a~~~l~ei~~~~~~~~~~l~-~~~~~l 284 (969)
+..++..++.++..-+.... .-+...+.....++.+++.|.++ ++...|+.++..+.....+....+. ...+.
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~--~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~- 176 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREH--RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP- 176 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSS--SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH-
T ss_pred CHHHHHHHHHHHHHHhCCCC--CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH-
Confidence 34577788888887655321 11122345567899999999865 4678899999888775432222222 11111
Q ss_pred HHhhhhhhhccCchhHHhhHHHHHHHHhhh---hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHh
Q 002084 285 KELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYI 361 (969)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l 361 (969)
.+. ..+.+.+.+....-+..+..++.. +...+.. ...++.|+.+...+ +.++...+......|+..-
T Consensus 177 --~Lv-~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-----~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 177 --LFI-QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-----CNAMEPILGLFNSN--KPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp --HHH-HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCCS
T ss_pred --HHH-HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-----cCcHHHHHHHhccC--CHHHHHHHHHHHHHHhCCC
Confidence 111 122345566666666666666543 1222221 12455566665554 4566666665555555321
Q ss_pred hccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHH-----
Q 002084 362 LGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF----- 436 (969)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~----- 436 (969)
+.. .-..+...++..++..+.- + + .+.|......+..++. +.+..
T Consensus 247 ---~~~----------~~~~~~~~~l~~L~~lL~~-----------~--d--~~v~~~a~~~L~~L~~--~~~~~~~~~~ 296 (530)
T 1wa5_B 247 ---KPQ----------PDWSVVSQALPTLAKLIYS-----------M--D--TETLVDACWAISYLSD--GPQEAIQAVI 296 (530)
T ss_dssp ---SSC----------CCHHHHGGGHHHHHHHTTC-----------C--C--HHHHHHHHHHHHHHHS--SCHHHHHHHH
T ss_pred ---CCC----------CcHHHHHhHHHHHHHHHcC-----------C--C--HHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 010 0011122334444444421 0 1 2455555555555542 11111
Q ss_pred ----HHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHH
Q 002084 437 ----IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADV 512 (969)
Q Consensus 437 ----l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~l 512 (969)
+..+...+ ...+|...+.++.+++.++...........-..++..+..+..++.. .++..+ ++.
T Consensus 297 ~~~~v~~Lv~lL-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~------~vr~~A-~~a 364 (530)
T 1wa5_B 297 DVRIPKRLVELL-----SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE------NIKKEA-CWT 364 (530)
T ss_dssp HTTCHHHHHHGG-----GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH------HHHHHH-HHH
T ss_pred hcCcHHHHHHHH-----CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH------HHHHHH-HHH
Confidence 12222222 13469999999999998875432110000001123333333333321 255555 488
Q ss_pred HHhhHHHHHhChhch-----HHHHHHHHHhcc--cCchhHHHHHHHHHHHHHhhc--c----cCCCccHHHHHHHHHHHH
Q 002084 513 IGSYSKWISAFQTNA-----RPLLLFLAAGIS--EAVSSNACASALRKICEDASA--L----IDEPSNLEILMWIGEALE 579 (969)
Q Consensus 513 ig~ys~wl~~~p~~L-----~~~l~~l~~~l~--~~~~~~~Aa~al~~lc~~c~~--~----l~~~~~~~~l~~~~~~l~ 579 (969)
++.++.. +++.. ..+++.|+..+. ++.++..|+.++..+|..+.. . +.....++.|..+. .
T Consensus 365 L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll---~ 438 (530)
T 1wa5_B 365 ISNITAG---NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL---E 438 (530)
T ss_dssp HHHHTTS---CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT---T
T ss_pred HHHHHcC---CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH---h
Confidence 8887742 22211 123444555554 355899999999999987542 1 10001222222222 1
Q ss_pred hcCCChhhHHHHHHHHHHHhcc
Q 002084 580 KRHLPLEDEEEVVGAISLILGS 601 (969)
Q Consensus 580 ~~~l~~~~~~~l~eai~~ii~~ 601 (969)
.-+...+...+.+++.++..
T Consensus 439 --~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 439 --IADNRIIEVTLDALENILKM 458 (530)
T ss_dssp --TCCHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHh
Confidence 12456667777777777654
No 31
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.66 E-value=4.4 Score=50.40 Aligned_cols=59 Identities=8% Similarity=0.058 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhc---cCchhHHHHHHHHHHHHHhhhhh
Q 002084 798 YTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT---AMHRGAALAAMSYLSCFLEECLA 856 (969)
Q Consensus 798 ~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~---~~e~~~~~a~~~Fl~~li~~~~~ 856 (969)
++.+++.++++....+.+.-+..++.+|.+.+.=++ ..+|+....-.+++..+...+..
T Consensus 802 vL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~ 863 (1073)
T 3gjx_A 802 VLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFP 863 (1073)
T ss_dssp HHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhH
Confidence 566666666665443332212567788888887665 56788888888888888877654
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.39 E-value=10 Score=44.35 Aligned_cols=467 Identities=12% Similarity=0.059 Sum_probs=208.4
Q ss_pred CCChHHHHHHHHHHHHHhcC-hHH-HHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHHHHHHH
Q 002084 19 DTESCNRVAANQWLVQFQQT-DAA-WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (969)
Q Consensus 19 ~~d~~~~~~A~~~L~~~Q~s-~~a-W~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~~Ll~~ 96 (969)
++|.+.|+-.--++..+-+. ++- -..+..|.+.=. +.++.+|-.|+.+|-.- . +++....+-..+...
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~---~~n~~vr~lAL~~L~~i-~------~~~~~~~l~~~l~~~ 150 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLN---HSTQFVQGLALCTLGCM-G------SSEMCRDLAGEVEKL 150 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHS---CSSSHHHHHHHHHHHHH-C------CHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC---CCCHhHHHHHHHHHHhc-C------CHHHHHHHHHHHHHH
Confidence 34555555555555555442 332 222222221111 22456777776666432 2 223333444444444
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHchhcc-CCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHH
Q 002084 97 AKRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHR 175 (969)
Q Consensus 97 l~~~~~~~~~v~~kL~~aLa~l~l~~~~-W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r 175 (969)
+. ..++.||++-+.++..++...++ =+++++.+...+... ++......+..|..+.+.- .
T Consensus 151 L~---~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~~-----------~--- 211 (618)
T 1w63_A 151 LK---TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK--NHGVLHTSVVLLTEMCERS-----------P--- 211 (618)
T ss_dssp HH---SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCSH-----------H---
T ss_pred Hc---CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHhC-----------h---
Confidence 43 46789999999999988876541 112222333333221 2222333444444333210 1
Q ss_pred HHHHHHHHhhhhHHHHHHHHhHhhccCCC--C-CcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCC
Q 002084 176 SQYGQELLSHTPMVVEFLMQQSDKRFDGG--V-PVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV 252 (969)
Q Consensus 176 ~~~~~~l~~~~~~v~~~l~~~l~~~~~~~--~-~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~ 252 (969)
...+.+....+.++..|.........++ . ...++-.+..+++++....... ++. ...+++.+...+..
T Consensus 212 -~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~------~~~--~~~~~~~L~~l~~~ 282 (618)
T 1w63_A 212 -DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND------DDS--SEAMNDILAQVATN 282 (618)
T ss_dssp -HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC------HHH--HHTTHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC------HHH--HHHHHHHHHHHHhc
Confidence 1123344566777777766543211100 0 0023446677888887654421 111 12233333333321
Q ss_pred C--------CcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhcCh
Q 002084 253 Q--------SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP 324 (969)
Q Consensus 253 ~--------~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~ 324 (969)
. ...-.|+.++..+ ... ..+...... .+. ..+.+.|.+.-.--...+..++..+...+
T Consensus 283 ~~~~~~~~~aV~~ea~~~i~~l---~~~--~~l~~~a~~---~L~-~~L~~~d~~vr~~aL~~L~~i~~~~p~~~----- 348 (618)
T 1w63_A 283 TETSKNVGNAILYETVLTIMDI---KSE--SGLRVLAIN---ILG-RFLLNNDKNIRYVALTSLLKTVQTDHNAV----- 348 (618)
T ss_dssp SCCSSTHHHHHHHHHHHHHHHS---CCC--HHHHHHHHH---HHH-HHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccchHHHHHHHHHHHHHhc---CCC--HHHHHHHHH---HHH-HHHhCCCCchHHHHHHHHHHHHhhCHHHH-----
Confidence 1 1222333444332 111 111111111 110 12233343321111233334443333222
Q ss_pred hHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCC
Q 002084 325 EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD 404 (969)
Q Consensus 325 ~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~ 404 (969)
......++.|...+ |..|...+++--+.+.+. ....+++ ..++..+.- .
T Consensus 349 --~~~~~~i~~~l~d~--d~~Ir~~alelL~~l~~~----------------~nv~~iv----~eL~~~l~~--~----- 397 (618)
T 1w63_A 349 --QRHRSTIVDCLKDL--DVSIKRRAMELSFALVNG----------------NNIRGMM----KELLYFLDS--C----- 397 (618)
T ss_dssp --GGGHHHHHHGGGSS--CHHHHHHHHHHHHHHCCS----------------SSTHHHH----HHHHHHHHH--C-----
T ss_pred --HHHHHHHHHHccCC--ChhHHHHHHHHHHHHccc----------------ccHHHHH----HHHHHHHHh--C-----
Confidence 23445666777765 566777777765544321 0112222 222222220 0
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhH
Q 002084 405 GMVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSV 482 (969)
Q Consensus 405 ~~~~e~d~f~~fR~~~~d~l~~~~~ilg~--~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~ 482 (969)
+ .+||..+...+-.++.-..+ ..++..++..+.... ++-.-| .+..+..+....+ +-....+..
T Consensus 398 ---d-----~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~----~~v~~~-~~~~l~~ii~~~p-~l~~~~v~~ 463 (618)
T 1w63_A 398 ---E-----PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG----SYVRDD-AVPNLIQLITNSV-EMHAYTVQR 463 (618)
T ss_dssp ---C-----HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG----GGSCSS-HHHHHHHHHHHSC-STHHHHHHH
T ss_pred ---C-----HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc----chhHHH-HHHHHHHHHhcCh-hHHHHHHHH
Confidence 0 36888877777777654332 345655554332211 111122 2233333333222 111111223
Q ss_pred HHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-----------ChhchHHHHHHHHHhc-ccCchhHHHHHH
Q 002084 483 IMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-----------FQTNARPLLLFLAAGI-SEAVSSNACASA 550 (969)
Q Consensus 483 i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~-----------~p~~L~~~l~~l~~~l-~~~~~~~~Aa~a 550 (969)
+...+..-..+.. +... +.|++|+|++.+.. +|..+...+.-++... .++.++..+..|
T Consensus 464 L~~~l~~~~~~~~--------~~~~-~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta 534 (618)
T 1w63_A 464 LYKAILGDYSQQP--------LVQV-AAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTA 534 (618)
T ss_dssp HHHHHHHCCSCSH--------HHHH-HHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHhcccccHH--------HHHH-HHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3333332111111 2233 46999999998864 3444555555555442 345688888899
Q ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 002084 551 LRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (969)
Q Consensus 551 l~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~i 598 (969)
+.++...+.. ..+.+..+..... ...+.+.|.+-++....+
T Consensus 535 ~~Kl~~~~~~------~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 535 IMKLSTRFTC------TVNRIKKVVSIYG-SSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHTTCSS------CHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcc------hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 9898875532 3445555554432 344567777766655443
No 33
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.35 E-value=2 Score=53.68 Aligned_cols=291 Identities=9% Similarity=0.048 Sum_probs=147.1
Q ss_pred HHHHhhHHHHHhChhchHHHHHHHHHhc----ccC--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCC
Q 002084 511 DVIGSYSKWISAFQTNARPLLLFLAAGI----SEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLP 584 (969)
Q Consensus 511 ~lig~ys~wl~~~p~~L~~~l~~l~~~l----~~~--~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~ 584 (969)
.++...+.-+ ..+.++.+++++-..+ ..+ ....+|..++..+++.|..... .+++.++.....+.. -.
T Consensus 429 ~~L~~~~~~~--~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~--~~l~~l~~~l~~l~~--~~ 502 (963)
T 2x19_B 429 DTLMYVYEML--GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS--DVVPGLIGLIPRISI--SN 502 (963)
T ss_dssp HHHHHHHHHH--THHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCC--SHHHHHHHHGGGSCC--CS
T ss_pred HHHHHHHHHc--cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhh--HHHHHHHHHHHhCCC--Cc
Confidence 5555544432 2456777777777776 333 2578889999999998876432 245544443222111 12
Q ss_pred hhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhccccc
Q 002084 585 LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLP 664 (969)
Q Consensus 585 ~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~ 664 (969)
...|...+..+|.....+... ..++..++ ..+-+.+.. +... ..+...+.+++. ...
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~---~~~l~~vl----~~l~~~l~~---------~~V~----~~A~~al~~l~~---~~~ 559 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADH---PVMINSVL----PLVLHALGN---------PELS----VSSVSTLKKICR---ECK 559 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHC---HHHHTTTH----HHHHHHTTC---------GGGH----HHHHHHHHHHHH---HTG
T ss_pred HHHHHHHHHHHHHHHHHHHhC---HHHHHHHH----HHHHHHhCC---------chHH----HHHHHHHHHHHH---HHH
Confidence 334555555555544332211 23344444 333333321 1111 134455555542 211
Q ss_pred ccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh-hhhHhhHHHHHHHHHHhhhhh--cC
Q 002084 665 VPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFVTLLPQVLDCLSTNFVSF--QN 741 (969)
Q Consensus 665 ~~~~~~~~~~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~-~~~~p~l~~l~~~l~~~~~~~--~~ 741 (969)
.. +.+.+..++..+..++. .-.-+.+..+.+..++...+...+ ....+++..+++.+...+... .+
T Consensus 560 ~~----------l~p~~~~il~~l~~~l~-~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 628 (963)
T 2x19_B 560 YD----------LPPYAANIVAVSQDVLM-KQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI 628 (963)
T ss_dssp GG----------CTTTHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HH----------HHhhHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 11234455555555554 222345677777788888776664 555666665555555433321 01
Q ss_pred --------cccHHHHHHHHHHHhcCCCC----------------cchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHH
Q 002084 742 --------HECYIRTASVVIEEFGHKDE----------------YGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEA 797 (969)
Q Consensus 742 --------~~~~L~l~~~li~~~g~~~~----------------~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~ 797 (969)
....+.+++.++..++.... ....+..++..+.... ...+.. ..+++++.+.
T Consensus 629 ~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~---~~~~~~v~e~ 704 (963)
T 2x19_B 629 PNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI-QKVLSK---WLNDAQVVEA 704 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH-HHHHHH---HTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH-HHHHHh---ccCchHHHHH
Confidence 11235567777777764210 1112333333332221 122221 2356899999
Q ss_pred HHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHh
Q 002084 798 YTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLE 852 (969)
Q Consensus 798 ~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~ 852 (969)
.+.++.+++...+..+. ++++.+++..+...... +. ...+.+...++.
T Consensus 705 ~~~~l~~~~~~~~~~~~----~~l~~~~~~l~~~~~~~-~~--~~~l~l~~~li~ 752 (963)
T 2x19_B 705 VCAIFEKSVKTLLDDFA----PMVPQLCEMLGRMYSTI-PQ--ASALDLTRQLVH 752 (963)
T ss_dssp HHHHHHHHHHHSSSTTG----GGHHHHHHHHHHHHHHS-CC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccc----ccHHHHHHHHHHHHHcC-Cc--cHHHHHHHHHHH
Confidence 99999998877665443 45666666666555432 11 234555555554
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.27 E-value=4.9 Score=46.01 Aligned_cols=341 Identities=12% Similarity=0.056 Sum_probs=167.7
Q ss_pred CChhHhHHHHHHHHhhhhccccCCccc--chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchH-
Q 002084 452 IPWKEVETKLFALNVVSEVVLQEGQAF--DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR- 528 (969)
Q Consensus 452 ~~W~~~Ea~Lf~l~~iae~~~~~~~~~--~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~- 528 (969)
.++.....++.+++.++..-..+.... .-..+..++..+....... ++..+ ++.++.++..-..+...+-
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~------v~~~A-~~~L~~l~~~~~~~~~~~~~ 158 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQ------LQFEA-AWALTNIASGTSENTKVVID 158 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHH------HHHHH-HHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHH------HHHHH-HHHHHHHhCCCHHHHHHHHh
Confidence 357777778888887744322111000 0011233333333221111 45545 4788877652111111111
Q ss_pred -HHHHHHHHhcccC--chhHHHHHHHHHHHHH---hhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccC
Q 002084 529 -PLLLFLAAGISEA--VSSNACASALRKICED---ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (969)
Q Consensus 529 -~~l~~l~~~l~~~--~~~~~Aa~al~~lc~~---c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~l 602 (969)
.+++.|+..+.++ .++..|+.++.+||.+ |+..+.....++.|..+.. ..-+...+.....+++.+...-
T Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~----~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 159 HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN----EHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC----TTCCHHHHHHHHHHHHHHHCSS
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh----cCCCHHHHHHHHHHHHHHHcCC
Confidence 4677788877754 5899999999999964 3333221113344433331 1235667888888999888775
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHH-HHH
Q 002084 603 SNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIF-ALL 681 (969)
Q Consensus 603 p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~-~~~ 681 (969)
|... .... ...+..+.+++... ++.. ...++..|..|+ .+- +... .++
T Consensus 235 ~~~~--~~~~----~~~l~~L~~lL~~~-------~~~v----~~~a~~aL~~l~---~~~-----------~~~~~~~~ 283 (528)
T 4b8j_A 235 PQPS--FEQT----RPALPALARLIHSN-------DEEV----LTDACWALSYLS---DGT-----------NDKIQAVI 283 (528)
T ss_dssp SCCC--HHHH----TTHHHHHHHHTTCC-------CHHH----HHHHHHHHHHHT---SSC-----------HHHHHHHH
T ss_pred CCCc--HHHH----HHHHHHHHHHHCCC-------CHHH----HHHHHHHHHHHH---cCC-----------HHHHHHHH
Confidence 4432 1222 23333334444321 2211 112333333332 110 1111 111
Q ss_pred -HhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhH-----hhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHH
Q 002084 682 -RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFV-----TLLPQVLDCLSTNFVSFQNHECYIRTASVVIEE 755 (969)
Q Consensus 682 -~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~-----p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~ 755 (969)
..++|.+..++. ..+..+.+.++.+++........... ..+|.+++.+... ..+....-+...+..
T Consensus 284 ~~g~v~~Lv~lL~---~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 284 EAGVCPRLVELLL---HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN-----LKKSIKKEACWTISN 355 (528)
T ss_dssp HTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC-----CCHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHc---CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC-----CcHHHHHHHHHHHHH
Confidence 245666666664 14678889999998887653222221 2344454444311 122322233333333
Q ss_pred hcCCCCcchhHHHHHH-HHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHh-hhHHHHhc-cccchHHHHHHHHHhh
Q 002084 756 FGHKDEYGPLFVTTFE-RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRT-SRKEVLAA-SGALLEVSFQKAAICC 832 (969)
Q Consensus 756 ~g~~~~~~~~~~~l~~-~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~-~p~~ll~~-~~~~l~~i~~~~l~~l 832 (969)
+.... ...+..++. .+.... +..+. ..++++.......+..+... .|...... ....++. .+..+
T Consensus 356 l~~~~--~~~~~~~~~~~~i~~L-~~lL~-----~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~----L~~lL 423 (528)
T 4b8j_A 356 ITAGN--KDQIQAVINAGIIGPL-VNLLQ-----TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP----LCDLL 423 (528)
T ss_dssp HHTSC--HHHHHHHHHTTCHHHH-HHHHH-----HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH----HHHGG
T ss_pred HHCCC--HHHHHHHHHCCCHHHH-HHHHh-----cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH----HHHHH
Confidence 33211 111222221 111111 12232 24788999988888888877 34432211 0134444 34457
Q ss_pred ccCchhHHHHHHHHHHHHHhhh
Q 002084 833 TAMHRGAALAAMSYLSCFLEEC 854 (969)
Q Consensus 833 ~~~e~~~~~a~~~Fl~~li~~~ 854 (969)
...+......++..+..++...
T Consensus 424 ~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 424 ICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 7788888999999988888654
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.60 E-value=17 Score=43.93 Aligned_cols=287 Identities=14% Similarity=0.053 Sum_probs=140.3
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhc---ChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChH
Q 002084 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (969)
Q Consensus 8 ~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~---s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~ 84 (969)
.+...|..|.+ ++...|..+-+.|....+ ...+|.....+|.++ +..+|--|+.+|..-...+ +
T Consensus 116 ~i~~lv~~L~~-~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~------d~~vr~~A~~~L~~L~~~~------~ 182 (780)
T 2z6g_A 116 AHPTNVQRLAE-PSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------A 182 (780)
T ss_dssp ----------C-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHTSH------H
T ss_pred cHHHHHHHhcC-ccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCC------CHHHHHHHHHHHHHHhCCC------h
Confidence 45666777764 455566666555543221 256788888888753 3689999999997644421 1
Q ss_pred HHH------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc-----cCCchHHHHHHHhhcccCCCcchHHHHHHH
Q 002084 85 AKD------ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (969)
Q Consensus 85 ~~~------~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~-----~W~~~i~~li~~l~~~~~~~~~~~~lL~~L 153 (969)
.+. ..-..|+..+.. ..+..++...+.+|..++.... .-...++.++..+++. ++......+..|
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL 258 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTL 258 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 221 233333444432 2367788888888888765321 1135677777777653 223334455555
Q ss_pred hhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccc
Q 002084 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (969)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~ 233 (969)
..|...-. ..+.. +.. ..++..|...+.. ++..++..++.|+..|..-. .-.
T Consensus 259 ~nLa~~~~-----------~~~~~----v~~--~g~v~~Lv~lL~~--------~~~~v~~~a~~aL~~La~~~---~e~ 310 (780)
T 2z6g_A 259 HNLLLHQE-----------GAKMA----VRL--AGGLQKMVALLNK--------TNVKFLAITTDCLQILAYGN---QES 310 (780)
T ss_dssp HHHHHHST-----------THHHH----HHH--TTHHHHHHHGGGC--------CCHHHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHhCCCh-----------hhHHH----HHH--cCCHHHHHHHHhc--------CCHHHHHHHHHHHHHHhcCC---hHH
Confidence 55544211 11111 111 1233334344443 23457788899999887421 001
Q ss_pred chhhcccchHHHHHhhcCCCC---cHHHHHHHHHHHHhcCCChhHHHH-hhhhhhHHhhhhhhhccCchhHHhhHHHHHH
Q 002084 234 QGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLVELVGRHEGLPQALL-CRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (969)
Q Consensus 234 ~~~i~~~~ll~~~~~~L~~~~---~~~~a~~~l~ei~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~ 309 (969)
...+.....++.+...|.+.+ ..+.++.++..+.. ..+....++ ...+ +.+. ..+.+.+.+..++.+..+.
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l---~~Ll-~lL~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGM---QALG-LHLTDPSQRLVQNCLWTLR 385 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHH---HHHG-GGTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchH---HHHH-HHHcCCchHHHHHHHHHHH
Confidence 112334456777777777553 23455666665543 322222222 1111 1111 1334456666666666666
Q ss_pred HHhhhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhH
Q 002084 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTL 351 (969)
Q Consensus 310 ~~~e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~ 351 (969)
.++..... .......+..|+.+...+ +.++.+.+.
T Consensus 386 ~L~~~~~~-----~~~~~~~i~~Lv~lL~~~--d~~vr~~A~ 420 (780)
T 2z6g_A 386 NLSDAATK-----QEGMEGLLGTLVQLLGSD--DINVVTCAA 420 (780)
T ss_dssp HHHTTCTT-----CSCCHHHHHHHHHHTTCS--CHHHHHHHH
T ss_pred HHhccchh-----hhhhhhHHHHHHHHHcCC--CHHHHHHHH
Confidence 66543321 111134566666666654 455554443
No 36
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.54 E-value=1.1 Score=45.34 Aligned_cols=150 Identities=12% Similarity=0.134 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHHhcCCCCc
Q 002084 683 VFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEY 762 (969)
Q Consensus 683 ~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~~g~~~~~ 762 (969)
++++.+...+. -..+..|.+.+|.+++...+.+|..+.++++.++..+...+.. +....-..+...+..+....
T Consensus 56 ~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d--~~~~vr~~a~~aL~~~~~~~-- 129 (242)
T 2qk2_A 56 ALVSALKKVIT--KDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKE--KKPNVVTALREAIDAIYAST-- 129 (242)
T ss_dssp HHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHcC--
Confidence 45666666663 1267889999999999999999998999998888888876652 33333233333333333221
Q ss_pred chhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhh-hHHHHhccccchHHHHHHHHHhhccCchhHHH
Q 002084 763 GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTS-RKEVLAASGALLEVSFQKAAICCTAMHRGAAL 841 (969)
Q Consensus 763 ~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~-p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~ 841 (969)
.+..++..+.. .+. ..+|.+....+.++.+++.++ |..+.. +.++.+++....++.-.++..-.
T Consensus 130 --~~~~ll~~l~~-----~l~-----~~~~~vr~~~l~~l~~~l~~~~~~~~~~---~~l~~l~p~l~~~l~D~~~~VR~ 194 (242)
T 2qk2_A 130 --SLEAQQESIVE-----SLS-----NKNPSVKSETALFIARALTRTQPTALNK---KLLKLLTTSLVKTLNEPDPTVRD 194 (242)
T ss_dssp --CHHHHHHHHHH-----HTT-----CSCHHHHHHHHHHHHHHHTTCCGGGCCH---HHHHHHHHHHHHHHTSSCHHHHH
T ss_pred --CHHHHHHHHHH-----HHc-----CCChHHHHHHHHHHHHHHHHcCCCCccH---HHHHHHHHHHHHHhcCCChHHHH
Confidence 13333333322 222 357999999999999998876 553222 35677888777788777777777
Q ss_pred HHHHHHHHHHhh
Q 002084 842 AAMSYLSCFLEE 853 (969)
Q Consensus 842 a~~~Fl~~li~~ 853 (969)
++..-+..+...
T Consensus 195 ~A~~~l~~l~~~ 206 (242)
T 2qk2_A 195 SSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666665544
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.02 E-value=23 Score=43.88 Aligned_cols=299 Identities=10% Similarity=0.023 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhhHHHHH--h-Chh------chHHH-HHHHHHhcccC-----chhHHHHHHHHHHHHHhhcccCCCccHH
Q 002084 505 VYRSLADVIGSYSKWIS--A-FQT------NARPL-LLFLAAGISEA-----VSSNACASALRKICEDASALIDEPSNLE 569 (969)
Q Consensus 505 ~~~t~~~lig~ys~wl~--~-~p~------~L~~~-l~~l~~~l~~~-----~~~~~Aa~al~~lc~~c~~~l~~~~~~~ 569 (969)
|.++ +..+|..++... . ... .+.+. .+.++..+.++ .++.+|+.++.++|+.. .+.++.
T Consensus 422 reaa-l~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-----~~~~l~ 495 (960)
T 1wa5_C 422 KDLY-IYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-----TKAQLI 495 (960)
T ss_dssp HHHH-HHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-----CHHHHH
T ss_pred HHHH-HHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-----CHHHHH
Confidence 4434 578888765421 1 111 34443 44566666544 48999999999988742 122222
Q ss_pred H-HHHHHHHHHhcCCChhhHHHHHHHHHHHhccCC---------chHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCc
Q 002084 570 I-LMWIGEALEKRHLPLEDEEEVVGAISLILGSVS---------NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNP 639 (969)
Q Consensus 570 ~-l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp---------~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~ 639 (969)
. +..+...+.. -+...+.....++..++.... ..+....++..+ ++.+-++++.......+...
T Consensus 496 ~~l~~l~~~L~d--~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~l----l~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 496 ELMPILATFLQT--DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEIL----LKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp HHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHH----HHHHHHHHHTTCCCHHHHTS
T ss_pred HHHHHHHHHhCC--CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHH----HHHHHHHHHhccCCCCcccc
Confidence 2 2223333221 134456777778887776321 112234444444 44444444432100000000
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHH-HHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Q 002084 640 ATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIF-ALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG 718 (969)
Q Consensus 640 ~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~-~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~ 718 (969)
.. ..+.+|+.+....... -.|+. .++..+..++..... -+.+..+...++.++...++..+
T Consensus 570 ~e---------~l~~al~~vv~~~~~~-------~~p~~~~l~~~L~~~l~~~~~--~~~~~~~~~~~~e~l~~l~~~~~ 631 (960)
T 1wa5_C 570 NE---------FLMRSIFRVLQTSEDS-------IQPLFPQLLAQFIEIVTIMAK--NPSNPRFTHYTFESIGAILNYTQ 631 (960)
T ss_dssp CH---------HHHHHHHHHHHHHTTT-------TGGGHHHHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHTSC
T ss_pred cH---------HHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHhcCC
Confidence 00 1233344333332211 12322 233333333333321 24566777778888888887644
Q ss_pred h-hhHhhHHHHHHHHHHhhhhh--cCcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHH
Q 002084 719 Q-HFVTLLPQVLDCLSTNFVSF--QNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLV 795 (969)
Q Consensus 719 ~-~~~p~l~~l~~~l~~~~~~~--~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~ 795 (969)
+ .+.++.+.++..+...+... .-.++.+.+.+.++... ..+.+.+.+++..+.... ... .++.+
T Consensus 632 ~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~l~~~~---------~~~-~~~~~ 698 (960)
T 1wa5_C 632 RQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS---ATIPESIKPLAQPLLAPN---------VWE-LKGNI 698 (960)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC---SSCCTTTGGGHHHHTSGG---------GGC-CTTTH
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc---cCCCHHHHHHHHHHcCHH---------Hhc-CCCCc
Confidence 3 23333333333333323221 12333455666666544 223333333333332111 111 13466
Q ss_pred HHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002084 796 EAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (969)
Q Consensus 796 ~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~ 853 (969)
.+..+.+..++...+..+.. ++.++...-..+.....+ ..++..+..++..
T Consensus 699 ~~~~~~L~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~--~~a~~ll~~i~~~ 749 (960)
T 1wa5_C 699 PAVTRLLKSFIKTDSSIFPD-----LVPVLGIFQRLIASKAYE--VHGFDLLEHIMLL 749 (960)
T ss_dssp HHHHHHHHHHHHHHGGGCSC-----SHHHHHHHHHHHTCTTTH--HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhChHHHHH-----HHHHHHHHHHHhCCCccc--chHHHHHHHHHHH
Confidence 67777777777766643331 233333222223332222 5666666666643
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=92.93 E-value=15 Score=41.90 Aligned_cols=298 Identities=11% Similarity=0.064 Sum_probs=136.0
Q ss_pred hhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC---CcHHHHHHHHHHHHhcCCChhHHHHh-hhhhh
Q 002084 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLC-RVPFL 284 (969)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~---~~~~~a~~~l~ei~~~~~~~~~~l~~-~~~~l 284 (969)
+...+..+++++..-+.... .-|.+.+...+.++.+.+.|... ++...|+.+|..+.....+..+.++. ..+
T Consensus 89 d~~~q~~a~~~~rklLs~~~--~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gai-- 164 (529)
T 3tpo_A 89 NLESQLQATQAARKLLSREK--QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI-- 164 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSSS--CCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH--
T ss_pred CHHHHHHHHHHHHHHHcCCC--CchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH--
Confidence 34566667777766554321 22334566788999999999643 46677888998887654332222221 111
Q ss_pred HHhhhhhhhccCchhHHhhHHHHHHHHhhh---hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhh-hH--HHHHHHH
Q 002084 285 KELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIADS-TL--QFWSTLA 358 (969)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~-~~--~FW~~l~ 358 (969)
+.+. ..+.+.+.+....-+..+..++.. +...+.+. ..++.|+.+...+ +.+.... .+ -.|. +.
T Consensus 165 -p~Lv-~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~-----g~i~~Ll~lL~~~--~~~~~~~~~~~~a~~~-L~ 234 (529)
T 3tpo_A 165 -PAFI-SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH-----GAIDPLLALLAVP--DLSTLACGYLRNLTWT-LS 234 (529)
T ss_dssp -HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHTTCSS--CGGGSCHHHHHHHHHH-HH
T ss_pred -HHHH-HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc-----CCcHHHHHHHhcc--chhHhHHHHHHHHHHH-HH
Confidence 1111 133455666555555555555321 22222211 2345555665554 2222111 11 1121 11
Q ss_pred HHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHH-
Q 002084 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFI- 437 (969)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l- 437 (969)
....+.+. ..-......++..+++-+..+. .+-+.+..-.+.++.. +++...
T Consensus 235 nl~~~~~~----------~~~~~~~~~~lp~L~~LL~~~~---------------~~v~~~a~~aL~~l~~--~~~~~~~ 287 (529)
T 3tpo_A 235 NLCRNKNP----------APPLDAVEQILPTLVRLLHHND---------------PEVLADSCWAISYLTD--GPNERIE 287 (529)
T ss_dssp HHHCCCTT----------CCCHHHHHHHHHHHHHHTTSSC---------------HHHHHHHHHHHHHHHS--SCHHHHH
T ss_pred HHHhcccc----------hhhHHHHhhHHHHHHHHhcCCc---------------HHHHHHHHHHHHHhhh--hhhhhHH
Confidence 11110000 0011112334444544443211 1233333333333321 122111
Q ss_pred --------HHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHH
Q 002084 438 --------QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSL 509 (969)
Q Consensus 438 --------~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~ 509 (969)
..+...+ .+.++...+.++.+++.++...........-...+..+..+..++... ++..+
T Consensus 288 ~v~~~g~i~~Lv~lL-----~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~------i~~~a- 355 (529)
T 3tpo_A 288 MVVKKGVVPQLVKLL-----GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN------IQKEA- 355 (529)
T ss_dssp HHHTTTCHHHHHHHH-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHH------HHHHH-
T ss_pred HHHhccchHHHHHHh-----cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHH------HHHHH-
Confidence 1222222 234677888999999988643321000000001112222333444322 45545
Q ss_pred HHHHHhhHHHHHhChhch--HHHHHHHHHhcccC--chhHHHHHHHHHHHHHhh
Q 002084 510 ADVIGSYSKWISAFQTNA--RPLLLFLAAGISEA--VSSNACASALRKICEDAS 559 (969)
Q Consensus 510 ~~lig~ys~wl~~~p~~L--~~~l~~l~~~l~~~--~~~~~Aa~al~~lc~~c~ 559 (969)
++.++..+..-..+.+.+ ..+++.|+..+.++ .++..|+.|+.++|..+.
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 488887764322221211 13556666666654 488999999999997654
No 39
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.49 E-value=18 Score=41.25 Aligned_cols=338 Identities=12% Similarity=0.051 Sum_probs=161.7
Q ss_pred CChhHhHHHHHHHHhhhhccccCCcc-c-chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhch--
Q 002084 452 IPWKEVETKLFALNVVSEVVLQEGQA-F-DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA-- 527 (969)
Q Consensus 452 ~~W~~~Ea~Lf~l~~iae~~~~~~~~-~-~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L-- 527 (969)
.++.....++.+++.+...-...... . .-..+..++..+...... .++..+ ++.++.++..-..+...+
T Consensus 99 ~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~------~v~~~A-~~~L~~l~~~~~~~~~~~~~ 171 (530)
T 1wa5_B 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE------MLQLEA-AWALTNIASGTSAQTKVVVD 171 (530)
T ss_dssp SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH------HHHHHH-HHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH------HHHHHH-HHHHHHHhCCCHHHHHHHHH
Confidence 35777777788887764322111000 0 001122333333322121 145545 477777664211111111
Q ss_pred HHHHHHHHHhcc--cCchhHHHHHHHHHHHHH---hhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccC
Q 002084 528 RPLLLFLAAGIS--EAVSSNACASALRKICED---ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (969)
Q Consensus 528 ~~~l~~l~~~l~--~~~~~~~Aa~al~~lc~~---c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~l 602 (969)
..+++.|+..+. ++.++..|+.++.+||.. ++..+.....++.|..+.. .-+...+...+.+++.+...-
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-----SNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG-----SCCHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc-----cCCHHHHHHHHHHHHHHhCCC
Confidence 133455555554 455899999999999953 4443321124455544432 135667888889999988654
Q ss_pred -CchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHH
Q 002084 603 -SNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL 681 (969)
Q Consensus 603 -p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~ 681 (969)
|... ......++.+ +-+++... ++.. ...++..|..|+ .+-. +....++
T Consensus 247 ~~~~~--~~~~~~~l~~----L~~lL~~~-------d~~v----~~~a~~~L~~L~---~~~~----------~~~~~~~ 296 (530)
T 1wa5_B 247 KPQPD--WSVVSQALPT----LAKLIYSM-------DTET----LVDACWAISYLS---DGPQ----------EAIQAVI 296 (530)
T ss_dssp SSCCC--HHHHGGGHHH----HHHHTTCC-------CHHH----HHHHHHHHHHHH---SSCH----------HHHHHHH
T ss_pred CCCCc--HHHHHhHHHH----HHHHHcCC-------CHHH----HHHHHHHHHHHh---CCCH----------HHHHHHH
Confidence 3222 1222333333 33333321 1111 122334444433 1100 1111122
Q ss_pred -HhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhH-----hhHHHHHHHHHHhhhhhcCcccHHHHHHHHHHH
Q 002084 682 -RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFV-----TLLPQVLDCLSTNFVSFQNHECYIRTASVVIEE 755 (969)
Q Consensus 682 -~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~-----p~l~~l~~~l~~~~~~~~~~~~~L~l~~~li~~ 755 (969)
..++|.+..++. ..+..+.+.++.+++......+.... ..+|.+++.+ . . +.+..-.-+...+..
T Consensus 297 ~~~~v~~Lv~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----~-~-~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 297 DVRIPKRLVELLS---HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL----S-S-PKENIKKEACWTISN 367 (530)
T ss_dssp HTTCHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT----T-C-SCHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHC---CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH----c-C-CCHHHHHHHHHHHHH
Confidence 245566666553 25678889999888877543222111 2334443333 2 1 223333333444444
Q ss_pred hcCCCCcchhHHHHHH-HHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhh-h--H---HHHhccccchHHHHHHH
Q 002084 756 FGHKDEYGPLFVTTFE-RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTS-R--K---EVLAASGALLEVSFQKA 828 (969)
Q Consensus 756 ~g~~~~~~~~~~~l~~-~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~-p--~---~ll~~~~~~l~~i~~~~ 828 (969)
+.... ...+..++. .+.... +..+. ..++++.......+..+.... | . .+... ..++.++
T Consensus 368 l~~~~--~~~~~~~~~~~~l~~L-~~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~--~~l~~L~--- 434 (530)
T 1wa5_B 368 ITAGN--TEQIQAVIDANLIPPL-VKLLE-----VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ--GCIKPLC--- 434 (530)
T ss_dssp HTTSC--HHHHHHHHHTTCHHHH-HHHHH-----HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHT--TCHHHHH---
T ss_pred HHcCC--HHHHHHHHHCCCHHHH-HHHHh-----cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHC--CCHHHHH---
Confidence 44311 111222221 111111 12222 356888888888888887753 2 2 22222 3444444
Q ss_pred HHhhccCchhHHHHHHHHHHHHHhhh
Q 002084 829 AICCTAMHRGAALAAMSYLSCFLEEC 854 (969)
Q Consensus 829 l~~l~~~e~~~~~a~~~Fl~~li~~~ 854 (969)
..+...++.....++..+..++...
T Consensus 435 -~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 435 -DLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp -HHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3566678888888888888888654
No 40
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.70 E-value=1.6 Score=44.63 Aligned_cols=151 Identities=7% Similarity=0.058 Sum_probs=88.3
Q ss_pred ChhHhHHHHHHHHhhhhccc-cCCc-ccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-h-hchH
Q 002084 453 PWKEVETKLFALNVVSEVVL-QEGQ-AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-Q-TNAR 528 (969)
Q Consensus 453 ~W~~~Ea~Lf~l~~iae~~~-~~~~-~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~-p-~~L~ 528 (969)
+-.-.++++.+++.+++... .+-. ......++.++..+.+... . |+... ...+-.+.+..... + .||+
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~-~------V~~aa-~~al~~i~~~~~~~~~~~~l~ 145 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKP-S------VIEAI-RKALLTICKYYDPLASSGRNE 145 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCH-H------HHHHH-HHHHHHHHHHSCTTCTTCTTH
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCH-H------HHHHH-HHHHHHHHHHccccccCCcHH
Confidence 35567899999999998886 4322 1211223445555543221 1 23211 23333333321111 1 3588
Q ss_pred HHHHHHHHhcccC--chhHHHHHHHHHHHHHhhc---ccCCCccH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccC
Q 002084 529 PLLLFLAAGISEA--VSSNACASALRKICEDASA---LIDEPSNL-EILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (969)
Q Consensus 529 ~~l~~l~~~l~~~--~~~~~Aa~al~~lc~~c~~---~l~~~~~~-~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~l 602 (969)
.+++-|+.++.++ .++..+...+.++++..+. .+. .++ +.++.....+. ..-+.+.|..-+++++.+...+
T Consensus 146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~--~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 146 DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ--RYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH--HHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH--HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999874 4888899999999988764 121 122 23332222222 1336778999999999999888
Q ss_pred CchHHHHHHHHHH
Q 002084 603 SNKELKNNLLARL 615 (969)
Q Consensus 603 p~~~~~~~~l~~l 615 (969)
+... +..++..|
T Consensus 223 G~~~-~~p~l~~L 234 (249)
T 2qk1_A 223 GMNT-FVKTLEHL 234 (249)
T ss_dssp CSGG-GHHHHHHS
T ss_pred CHHH-HHHHHHHH
Confidence 8654 45555554
No 41
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=90.47 E-value=24 Score=38.85 Aligned_cols=296 Identities=15% Similarity=0.083 Sum_probs=161.0
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhcC----------hHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCC
Q 002084 12 AVHVLNHDTESCNRVAANQWLVQFQQT----------DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (969)
Q Consensus 12 ai~~ly~~~d~~~~~~A~~~L~~~Q~s----------~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l 81 (969)
.+..|-++.++..|..|-..|..+-.. ..+......+|.++ ++++|..|+.+|.+-...
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~vr~~a~~~L~~l~~~----- 137 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE------FEDVQEQAVWALGNIAGD----- 137 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHccC-----
Confidence 344444333788888888888887652 23555666677653 468999999999865543
Q ss_pred ChHHHHHHH-HHHHHHHHHhcC--CChHHHHHHHHHHHHHHchh-c--c---CCchHHHHHHHhhcccCCCcchHHHHHH
Q 002084 82 QSAAKDALL-NALLVAAKRFSS--GPPQLLTQICLALSALILRA-V--E---HGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (969)
Q Consensus 82 ~~~~~~~Lr-~~Ll~~l~~~~~--~~~~v~~kL~~aLa~l~l~~-~--~---W~~~i~~li~~l~~~~~~~~~~~~lL~~ 152 (969)
+++.+..+. ...+..+.++-. .+..++...+.+|+.++... + . -...++.++..+... ++......++.
T Consensus 138 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~ 215 (450)
T 2jdq_A 138 STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS--DTDVLADACWA 215 (450)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHH
Confidence 223333332 234445544332 45789999999999998543 2 1 246778888877642 22333445556
Q ss_pred HhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccc
Q 002084 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (969)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~ 232 (969)
|..+.+.. ...+..+.+ ....+.++.++ .. ++..++..++.++..-.... .-
T Consensus 216 L~~l~~~~-----------~~~~~~~~~--~~~i~~L~~ll----~~--------~~~~v~~~a~~~L~~l~~~~---~~ 267 (450)
T 2jdq_A 216 LSYLSDGP-----------NDKIQAVID--AGVCRRLVELL----MH--------NDYKVVSPALRAVGNIVTGD---DI 267 (450)
T ss_dssp HHHHTSSS-----------HHHHHHHHH--TTTHHHHHHHT----TC--------SCHHHHHHHHHHHHHHTTSC---HH
T ss_pred HHHHHCCC-----------cHHHHHHHH--cCcHHHHHHHH----CC--------CchhHHHHHHHHHHHHhhCC---hH
Confidence 65555421 111111111 11334444433 32 23567888888887654321 00
Q ss_pred cchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcCCChhHHHHh-hhhhhHHhhhhhhhccCchhHHhhHHHHHH
Q 002084 233 SQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (969)
Q Consensus 233 ~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~ 309 (969)
....+...+.++.+.+.|.++ .....|+.++..+.....+..+.++. .++ +.+. ..+.+++.+.....+..+.
T Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l---~~L~-~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF---PALI-SILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH---HHHH-HHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH---HHHH-HHHhcCCHHHHHHHHHHHH
Confidence 011133456888888888865 46778888888877543322222221 111 1111 1333456666666677777
Q ss_pred HHhhh----hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHH
Q 002084 310 EIGQA----APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (969)
Q Consensus 310 ~~~e~----~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e 359 (969)
.++.. ....+.+ ...++.|+.+...+ +.++.+.++..-..+.+
T Consensus 344 ~l~~~~~~~~~~~l~~-----~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVE-----LGCIKPLCDLLTVM--DSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHCCHHHHHHHHH-----HTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH-----CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 66543 1111211 13556666666654 55666666555444443
No 42
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=90.02 E-value=30 Score=39.25 Aligned_cols=287 Identities=15% Similarity=0.076 Sum_probs=155.1
Q ss_pred ChHHHHHHHHHHHHHhcC-hH---------HHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHH
Q 002084 21 ESCNRVAANQWLVQFQQT-DA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALL 90 (969)
Q Consensus 21 d~~~~~~A~~~L~~~Q~s-~~---------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr 90 (969)
++..+.+|-..|..+-.. ++ +-.....+|.++ +.+++.-|+.+|.+-... +++.+..+.
T Consensus 131 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~------~~~v~~~a~~aL~~l~~~-----~~~~~~~i~ 199 (528)
T 4b8j_A 131 FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS------SDDVREQAVWALGNVAGD-----SPKCRDLVL 199 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHHT-----CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC------CHHHHHHHHHHHHHHhCC-----ChhhHHHHH
Confidence 378888888888888775 43 344455666543 368999999999766542 233333333
Q ss_pred H-HHHHHHHHhc--CCChHHHHHHHHHHHHHHchhc--c---CCchHHHHHHHhhcccCCCcchHHHHHHHhhchhcccc
Q 002084 91 N-ALLVAAKRFS--SGPPQLLTQICLALSALILRAV--E---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (969)
Q Consensus 91 ~-~Ll~~l~~~~--~~~~~v~~kL~~aLa~l~l~~~--~---W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~ 162 (969)
+ ..+..+...- ..+..++...+.+|+.++...+ . -...++.++..+.+. ++......+..|..+...-
T Consensus 200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~-- 275 (528)
T 4b8j_A 200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDGT-- 275 (528)
T ss_dssp HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSC--
T ss_pred HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCC--
Confidence 2 2344444432 3467899999999999986532 1 245677777777642 2333445555665554321
Q ss_pred ccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccch
Q 002084 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (969)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~l 242 (969)
..+...+.+ ....+.++.++ .. ++..++..++.++..-.... .-....+.....
T Consensus 276 ---------~~~~~~~~~--~g~v~~Lv~lL----~~--------~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~~~~ 329 (528)
T 4b8j_A 276 ---------NDKIQAVIE--AGVCPRLVELL----LH--------PSPSVLIPALRTVGNIVTGD---DAQTQCIIDHQA 329 (528)
T ss_dssp ---------HHHHHHHHH--TTCHHHHHHHT----TC--------SCHHHHHHHHHHHHHHTTSC---HHHHHHHHTTTH
T ss_pred ---------HHHHHHHHH--cCHHHHHHHHH----cC--------CChhHHHHHHHHHHHHHcCC---HHHHHHHHHhhh
Confidence 111111111 01233444333 33 23467888888887654311 001112345667
Q ss_pred HHHHHhhcCCC---CcHHHHHHHHHHHHhcCCChhHHHHh-hhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhh----
Q 002084 243 LNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA---- 314 (969)
Q Consensus 243 l~~~~~~L~~~---~~~~~a~~~l~ei~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~---- 314 (969)
++.+...|.++ .+...|+.++..+.....+....++. .++ +.+. ..+.++|.+.....+..+..++..
T Consensus 330 l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i---~~L~-~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 405 (528)
T 4b8j_A 330 LPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII---GPLV-NLLQTAEFDIKKEAAWAISNATSGGSHD 405 (528)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH---HHHH-HHHHHSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH---HHHH-HHHhcCCHHHHHHHHHHHHHHHcCCCHH
Confidence 88888888755 45678888888877643322222221 111 1111 123344666656666666666543
Q ss_pred hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHH
Q 002084 315 APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (969)
Q Consensus 315 ~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e 359 (969)
....+.+ ...++.|+.+...+ |.++...++.....+..
T Consensus 406 ~~~~l~~-----~~~i~~L~~lL~~~--d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 406 QIKYLVS-----EGCIKPLCDLLICP--DIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHH-----TTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----CCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Confidence 1222221 12455566666665 56676666666555543
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.31 E-value=44 Score=38.90 Aligned_cols=109 Identities=9% Similarity=-0.025 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccC--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhc
Q 002084 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKR 581 (969)
Q Consensus 504 v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~--~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~ 581 (969)
+|..+ +..+|... .|+..+.+++.+.+++.++ .++..|+.++.++++.+...+ +.+++.+.... .
T Consensus 123 vr~lA-L~~L~~i~-----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--~~~~~~l~~lL-----~ 189 (618)
T 1w63_A 123 VQGLA-LCTLGCMG-----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--EMFLPATKNLL-----N 189 (618)
T ss_dssp HHHHH-HHHHHHHC-----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--GGGGGGTTTST-----T
T ss_pred HHHHH-HHHHHhcC-----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--HHHHHHHHHHh-----C
Confidence 45545 47888765 4777788888888888764 499999999999999876533 11222221111 0
Q ss_pred CCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 002084 582 HLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID 628 (969)
Q Consensus 582 ~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~ 628 (969)
.-+...+...+.+++.+...-| + ....+..++..++..+.++..
T Consensus 190 D~d~~V~~~Al~~L~~i~~~~~--~-~~~~~~~~v~~l~~~L~~~~~ 233 (618)
T 1w63_A 190 EKNHGVLHTSVVLLTEMCERSP--D-MLAHFRKLVPQLVRILKNLIM 233 (618)
T ss_dssp CCCHHHHHHHHHHHHHHCCSHH--H-HHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHhCh--H-HHHHHHHHHHHHHHHHHHHHc
Confidence 1123344444555555543211 1 123344555555555555543
No 44
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=87.18 E-value=9.4 Score=39.92 Aligned_cols=170 Identities=14% Similarity=0.220 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHHHHccccccccchhh---cccchHHHHH-hhcC-CCCcHH-HHHHHHHHHHhcCCChhHHHHhhhhh-
Q 002084 211 DRNRKILRCLLSWVRAGCFTEISQGSL---AAHPLLNFVF-NSLQ-VQSSFD-VAIEVLVELVGRHEGLPQALLCRVPF- 283 (969)
Q Consensus 211 ~~~~~~l~cl~sWi~~~~~~~~~~~~i---~~~~ll~~~~-~~L~-~~~~~~-~a~~~l~ei~~~~~~~~~~l~~~~~~- 283 (969)
.+++.+|+-+..||.-.. +...+ ...|+++.++ +.-. .|+.++ ....++..++.+..+.....+|.++.
T Consensus 44 ~vKkeiLkLiet~i~~~~----d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~ 119 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSN----DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA 119 (321)
T ss_dssp HHHHHHHHHHHHHHTTCS----CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 367888888899997531 22222 1233443333 2222 244543 45677777777654433323333332
Q ss_pred -hHHhhhhhhhc---cCchhHHhhHHHHHHHHhhhhhHHHHhcCh-hHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHH
Q 002084 284 -LKELLLLPALT---DGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358 (969)
Q Consensus 284 -l~~~~~~~~~~---~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~ 358 (969)
+...+ ..+. ++-+|-..++.+++-++.++....+..-++ .+..+++.++....|+ +++|++..+.--..|.
T Consensus 120 VFe~TL--~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~--~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 120 VFECTL--NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT--MRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHH--HHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHH
Confidence 11111 1222 344677788999999998887777766554 5567899999999998 7899998888877777
Q ss_pred HHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHHcc
Q 002084 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ 395 (969)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 395 (969)
+.+.+ .+ +...+-|+.+|..++.-++.-+.
T Consensus 196 ~n~~~-~~------~~~~~Fy~~fy~~il~~if~VlT 225 (321)
T 1w9c_A 196 QNVAQ-EE------AAAQSFYQTYFCDILQHIFSVVT 225 (321)
T ss_dssp HHHHH-CH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-Ch------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66542 11 12345566667666666555443
No 45
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=87.07 E-value=63 Score=39.87 Aligned_cols=167 Identities=12% Similarity=-0.016 Sum_probs=86.4
Q ss_pred HHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhc-Cc-------------------
Q 002084 685 WPMLEKLFR--SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQ-NH------------------- 742 (969)
Q Consensus 685 ~~~l~~il~--~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~-~~------------------- 742 (969)
-|++..++. -....+..|..++|..+++..+.++..+.|+++.+++.+........ +.
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDF 613 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTH
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCc
Confidence 355555554 11234578999999999999999999999999998887765443210 10
Q ss_pred --ccHHH-HHHHHHHHhcCCCC-cchhHHHHHHHHhhHHHHHHhhcCCCCCCCCc--HHHHHHHHHHHHHHhhhHHHHhc
Q 002084 743 --ECYIR-TASVVIEEFGHKDE-YGPLFVTTFERFSQAASVRALNSSYICDQEPD--LVEAYTNFASTFVRTSRKEVLAA 816 (969)
Q Consensus 743 --~~~L~-l~~~li~~~g~~~~-~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pD--l~~~~f~l~~~~l~~~p~~ll~~ 816 (969)
-.+|+ .++.+++..+..++ ....+..++..+.+. +....+. ...+..+ .+...+.-++++.+-.+.. -..
T Consensus 614 ~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~--l~~~l~~-~~~~~~~~~~i~~~i~al~~lakgf~~~-~~~ 689 (980)
T 3ibv_A 614 NSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGK--ANAALSS-DLSALENIISVYCSLMAIGNFAKGFPAR-GSE 689 (980)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH--HHHHHTT-SCC--CHHHHHHHHHHHHHHHHHTSCSC-C-C
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH--HHHHHhh-cccCccHHHHHHHHHHHHHHHhccCCcc-cCC
Confidence 01233 56666666553221 122334444433332 1211111 1111122 3344455556666543221 000
Q ss_pred ccc---chHHHHHHHHHhhc--cCchhHHHHHHHHHHHHHhhhh
Q 002084 817 SGA---LLEVSFQKAAICCT--AMHRGAALAAMSYLSCFLEECL 855 (969)
Q Consensus 817 ~~~---~l~~i~~~~l~~l~--~~e~~~~~a~~~Fl~~li~~~~ 855 (969)
+.| .+..+.+..+.++. ..+.....+++.++..+|..-+
T Consensus 690 ~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg 733 (980)
T 3ibv_A 690 EVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG 733 (980)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 011 23344444545554 3455666777788888876543
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=85.38 E-value=31 Score=34.17 Aligned_cols=220 Identities=16% Similarity=0.109 Sum_probs=130.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChH----------HHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCc
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA----------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG 78 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~----------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~ 78 (969)
|...+..|. +++++.|..|-..|..+-.... +......+|.++ +.+++..|+.+|.+-...
T Consensus 4 i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~~-- 74 (252)
T 4hxt_A 4 VEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST------DSEVQKEAARALANIASG-- 74 (252)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHcC--
Confidence 444454454 5668889999999998865543 455666777653 368999999999866543
Q ss_pred CCCChHHHHHHHH-HHHHHHHHhc-CCChHHHHHHHHHHHHHHchhcc------CCchHHHHHHHhhcccCCCcchHHHH
Q 002084 79 YYLQSAAKDALLN-ALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVL 150 (969)
Q Consensus 79 ~~l~~~~~~~Lr~-~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~l~~~~------W~~~i~~li~~l~~~~~~~~~~~~lL 150 (969)
+++.+..+.+ ..+..+.+.- .++..++...+.+|..++..... -...++.++..+.+. ++......+
T Consensus 75 ---~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~ 149 (252)
T 4hxt_A 75 ---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAA 149 (252)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHH
T ss_pred ---ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH
Confidence 2344433332 2455554433 45678999999999999853221 235677788777653 233344555
Q ss_pred HHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccc
Q 002084 151 EMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (969)
Q Consensus 151 ~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~ 230 (969)
..|..+...- +..+..+.+ ..++..|...+.. ++..++..++.++..-....
T Consensus 150 ~~L~~l~~~~-----------~~~~~~~~~------~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~--- 201 (252)
T 4hxt_A 150 RALANIASGP-----------DEAIKAIVD------AGGVEVLVKLLTS--------TDSEVQKEAARALANIASGP--- 201 (252)
T ss_dssp HHHHHHTTSC-----------HHHHHHHHH------TTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSB---
T ss_pred HHHHHHHcCC-----------HHHHHHHHH------CcCHHHHHHHHCC--------CCHHHHHHHHHHHHHHHcCC---
Confidence 6665554421 112221111 1233334343343 23568888888888765421
Q ss_pred cccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcC
Q 002084 231 EISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (969)
Q Consensus 231 ~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~ 270 (969)
.-....+...+.++.+.+.+.++ ++.+.|+.++..+....
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 00111234567788888888754 45678888887776644
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=84.87 E-value=14 Score=37.01 Aligned_cols=191 Identities=15% Similarity=0.081 Sum_probs=111.3
Q ss_pred hHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHH-HHHHHHHHHHhc-CCChHHHHHHHHHHH
Q 002084 39 DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL-LNALLVAAKRFS-SGPPQLLTQICLALS 116 (969)
Q Consensus 39 ~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~L-r~~Ll~~l~~~~-~~~~~v~~kL~~aLa 116 (969)
+..|..-..+|.+++ .+++.-|+..|+..+.. +.+....+ ....+..+.++- .++..++...+.+|.
T Consensus 11 ~~~~~~~~~~L~s~~------~~~~~~a~~~L~~~l~~-----~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 79 (252)
T 4db8_A 11 GSELPQMTQQLNSDD------MQEQLSATRKFSQILSD-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79 (252)
T ss_dssp TCSHHHHHHHHHSSC------SSHHHHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCC------HHHHHHHHHHHHHHHcC-----CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344666677787654 68999999999877764 22233222 233445554432 455778888888899
Q ss_pred HHHchhcc------CCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHH
Q 002084 117 ALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVV 190 (969)
Q Consensus 117 ~l~l~~~~------W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~ 190 (969)
.++..... ....++.++..+.+. ++......+..|..+...- ..+...+.+ ..++
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~~------~~~i 140 (252)
T 4db8_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG-----------NEQIQAVID------AGAL 140 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSC-----------HHHHHHHHH------TTHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC-----------chHHHHHHH------CCCH
Confidence 88864321 245677777777652 3334455666666664421 111111111 1233
Q ss_pred HHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHh
Q 002084 191 EFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVG 268 (969)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~ 268 (969)
..+...+.. ++..++..++.++..-.... .-....+...+.++.+.+.|.++ ++...|+.++..+..
T Consensus 141 ~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 141 PALVQLLSS--------PNEQILQEALWALSNIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHGGGC--------SCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhC--------CCHHHHHHHHHHHHHHHcCC---hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 444444443 23567888888887655421 00111234567888888888765 467888888888875
Q ss_pred cC
Q 002084 269 RH 270 (969)
Q Consensus 269 ~~ 270 (969)
..
T Consensus 210 ~~ 211 (252)
T 4db8_A 210 GG 211 (252)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=84.83 E-value=65 Score=37.45 Aligned_cols=108 Identities=7% Similarity=0.046 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhc--cc--CchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHH
Q 002084 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI--SE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALE 579 (969)
Q Consensus 504 v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l--~~--~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~ 579 (969)
+|..+ +.++|... .|++.+.+++.+.+++ .+ |.++..|+.++.++++.+...+..+.+.+.+..+..
T Consensus 127 ir~lA-Lr~L~~i~-----~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~--- 197 (621)
T 2vgl_A 127 FMGLA-LHCIANVG-----SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN--- 197 (621)
T ss_dssp HHHHH-HHHHHHHC-----CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT---
T ss_pred HHHHH-HHHhhccC-----CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC---
Confidence 45444 47777754 4889999999999999 65 449999999999999988765531135555544331
Q ss_pred hcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 002084 580 KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID 628 (969)
Q Consensus 580 ~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~ 628 (969)
.-+.......+..++.+...-| .....+...++..+.+++.
T Consensus 198 --d~d~~V~~~a~~~l~~i~~~~~------~~~~~~~~~~~~~L~~ll~ 238 (621)
T 2vgl_A 198 --DQHLGVVTAATSLITTLAQKNP------EEFKTSVSLAVSRLSRIVT 238 (621)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHCH------HHHTTHHHHHHHHHHHHHH
T ss_pred --CCCccHHHHHHHHHHHHHHhCh------HHHHHHHHHHHHHHHHHHh
Confidence 1233334444444444433221 1223344445556666554
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=84.25 E-value=39 Score=34.39 Aligned_cols=217 Identities=14% Similarity=0.086 Sum_probs=119.1
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHH
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~ 88 (969)
+...+..| .++|+..|..|-..|.++. ++++......+|.+++ ..+|..|+..|.. +... ++....
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~~------~~vR~~A~~aL~~-l~~~-----~~~~~~ 90 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDKN------YIRRDIGAFILGQ-IKIC-----KKCEDN 90 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSS------HHHHHHHHHHHHH-SCCC-----TTTHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCCC------HHHHHHHHHHHHH-hccc-----cccchH
Confidence 44455555 4678999999999999987 6889998899997643 6899999998853 3211 112222
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhcc-CCchHHHHHHHhhcccCCCcchHHHHHHHhhchhc-cccc--c
Q 002084 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--Q 164 (969)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~~-W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE-~~~~--~ 164 (969)
+...+...+. ...+..|+...+.+|+.+....+. .+..++.++..+... ++.........|..+..+ .... +
T Consensus 91 l~~~L~~~~~--~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~~~~~~L~~ 166 (280)
T 1oyz_A 91 VFNILNNMAL--NDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK--STNVRRATAFAISVINDKATIPLLIN 166 (280)
T ss_dssp HHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---CCHHHHHH
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2222222222 245678999999898888644332 234556666555432 111112222222222111 0000 0
Q ss_pred ccccCCCHHHHHHHHHHHHh---hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccc
Q 002084 165 ASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (969)
Q Consensus 165 ~~~~~l~~~~r~~~~~~l~~---~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ 241 (969)
.+.. -....|......+.. ..+.++..+...+.. ++..++..++.++... + ...
T Consensus 167 ~l~d-~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~A~~aL~~~---~-----------~~~ 223 (280)
T 1oyz_A 167 LLKD-PNGDVRNWAAFAININKYDNSDIRDCFVEMLQD--------KNEEVRIEAIIGLSYR---K-----------DKR 223 (280)
T ss_dssp HHTC-SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC--------SCHHHHHHHHHHHHHT---T-----------CGG
T ss_pred HHcC-CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHh---C-----------CHh
Confidence 0000 122344444444433 245566666555442 2345777777666532 1 223
Q ss_pred hHHHHHhhcCCCCcHHHHHHHHHHH
Q 002084 242 LLNFVFNSLQVQSSFDVAIEVLVEL 266 (969)
Q Consensus 242 ll~~~~~~L~~~~~~~~a~~~l~ei 266 (969)
.++.+...|.+++.+..|++.+..+
T Consensus 224 ~~~~L~~~l~d~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 224 VLSVLCDELKKNTVYDDIIEAAGEL 248 (280)
T ss_dssp GHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred hHHHHHHHhcCccHHHHHHHHHHhc
Confidence 5667777778888888888877665
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=82.48 E-value=30 Score=34.26 Aligned_cols=185 Identities=13% Similarity=0.077 Sum_probs=107.3
Q ss_pred HHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHH-HHHHHHHHHhc-CCChHHHHHHHHHHHHHHchh
Q 002084 45 ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALL-NALLVAAKRFS-SGPPQLLTQICLALSALILRA 122 (969)
Q Consensus 45 ~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr-~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~l~~ 122 (969)
...+|.++ +.++|.-|+..|.+-...+ ++.+..+. ...+..+.++- .++..++...+.+|..++...
T Consensus 7 L~~~L~~~------~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 7 LVKLLTST------DSETQKEAARDLAEIASGP-----ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHTTCS------CHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCC------CHHHHHHHHHHHHHHhcCC-----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 34556543 3689999999998776643 23333333 23555554433 456789999999999998652
Q ss_pred cc------CCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHh
Q 002084 123 VE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQ 196 (969)
Q Consensus 123 ~~------W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~ 196 (969)
.. -.+.++.++..+.+. ++......+..|..+...- ...+..+.+ ....+.++ ..
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~~--~~~i~~L~----~~ 136 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGP-----------DEAIKAIVD--AGGVEVLV----KL 136 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSC-----------HHHHHHHHH--TTHHHHHH----HH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC-----------HHHHHHHHH--CCCHHHHH----HH
Confidence 21 135677777777652 2334455666666655421 112222211 11233333 33
Q ss_pred HhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcC
Q 002084 197 SDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (969)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~ 270 (969)
+.. ++..++..++.++..-.... .-....+...+.++.+.+.|.++ +....|+.++..+....
T Consensus 137 l~~--------~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 137 LTS--------TDSEVQKEAARALANIASGP---DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201 (252)
T ss_dssp TTC--------SCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB
T ss_pred HcC--------CCHHHHHHHHHHHHHHHcCC---HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 333 23568888988888765421 10112234567888888888765 56778888888777643
No 51
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=80.96 E-value=11 Score=36.61 Aligned_cols=188 Identities=15% Similarity=0.052 Sum_probs=106.2
Q ss_pred ChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHH-HHHHHHHHh-cCCChHHHHHHHHHH
Q 002084 38 TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLN-ALLVAAKRF-SSGPPQLLTQICLAL 115 (969)
Q Consensus 38 s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~-~Ll~~l~~~-~~~~~~v~~kL~~aL 115 (969)
.+..+.....||.++ +.+++.-|+..|.+-... +++.+..+.+ ..+..+.++ ..++..++..-+.+|
T Consensus 10 ~~~~~~~l~~LL~s~------~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L 78 (210)
T 4db6_A 10 HGSELPQMVQQLNSP------DQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 78 (210)
T ss_dssp ---CHHHHHHHTTCS------CHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCC------CHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 355567778888764 368999999999876543 2344333332 344444443 345678888989999
Q ss_pred HHHHchhc------cCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHH
Q 002084 116 SALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV 189 (969)
Q Consensus 116 a~l~l~~~------~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v 189 (969)
..++.... .....++.++..+.+. ++......+..|..+... ....+..+. . ..+
T Consensus 79 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~-----------~~~~~~~~~----~--~~~ 139 (210)
T 4db6_A 79 SNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----------GNEQIQAVI----D--AGA 139 (210)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS-----------CHHHHHHHH----H--TTH
T ss_pred HHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcC-----------CHHHHHHHH----H--cCc
Confidence 98875432 1356778888888653 233334455555555431 111222111 1 123
Q ss_pred HHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHH
Q 002084 190 VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVEL 266 (969)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei 266 (969)
+..|...+.. ++..++..++.++..-..... -....+...+.++.+.+.+.++ +..+.|+.++..+
T Consensus 140 i~~L~~ll~~--------~~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 140 LPALVQLLSS--------PNEQILQEALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHTTC--------SCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCHHHHHHHHHHHHHHHcCCc---HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3333333333 235688889888887665321 0111234566788888888754 4567777777654
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.61 E-value=63 Score=39.51 Aligned_cols=239 Identities=14% Similarity=0.152 Sum_probs=128.8
Q ss_pred HHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHh
Q 002084 458 ETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAG 537 (969)
Q Consensus 458 Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~ 537 (969)
|+++-++.++++........ -|.+..++..+...-.++. ..||..+ -..+..+.. .-+|.-+..+|+.|+.+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~~~~dk~---~~v~~aa-~~~~~~~~~--~~~~~a~~~~~~~~~~~ 141 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSV--EPYIVQLVPAICTNAGNKD---KEIQSVA-SETLISIVN--AVNPVAIKALLPHLTNA 141 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTT--HHHHHTTHHHHHHHTTCSS---HHHHHHH-HHHHHHHHH--HSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCc--ccchHHHHHHHHHHhcCCc---hHHHHHH-HHHHHHHHH--hCCHHHHHHHHHHHHHH
Confidence 99999999998766421111 1444444443321111110 1134322 133333222 33677788899999999
Q ss_pred cccCc---hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHH
Q 002084 538 ISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLAR 614 (969)
Q Consensus 538 l~~~~---~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ 614 (969)
|.... ....|-..+.++++.++..+.. .++.+.-+....+ .....+....-.+++-.+.+.+.+.+ +...+..
T Consensus 142 ~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~ 217 (986)
T 2iw3_A 142 IVETNKWQEKIAILAAFSAMVDAAKDQVAL--RMPELIPVLSETM-WDTKKEVKAAATAAMTKATETVDNKD-IERFIPS 217 (986)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHSHHHHHH--HHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHhHHHHHH--hccchhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHH
Confidence 86543 5677888999999998776632 5555554443321 23445555555666666666666544 2222222
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHHh
Q 002084 615 LLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS 694 (969)
Q Consensus 615 ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~~ 694 (969)
| -.++.. |. .+-.+++.|++. .+... -..| .+.-+.|+|.+-+..
T Consensus 218 ~--------~~~~~~---------p~-------~~~~~~~~l~~~--tfv~~------v~~~---~l~~~~p~l~r~l~~ 262 (986)
T 2iw3_A 218 L--------IQCIAD---------PT-------EVPETVHLLGAT--TFVAE------VTPA---TLSIMVPLLSRGLNE 262 (986)
T ss_dssp H--------HHHHHC---------TT-------HHHHHHHHHTTC--CCCSC------CCHH---HHHHHHHHHHHHHTS
T ss_pred H--------HHHhcC---------hh-------hhHHHHHHhhcC--eeEee------ecch---hHHHHHHHHHhhhcc
Confidence 2 223332 11 123457766521 01111 1233 345567988888752
Q ss_pred hhccchHHHHHHHHHHHHHHHhhh--hhhHhhHHHHHHHHHHhhhhhcCcccHHH
Q 002084 695 EHMENGNLSTAACRALSLAIQSSG--QHFVTLLPQVLDCLSTNFVSFQNHECYIR 747 (969)
Q Consensus 695 ~~~~~~~v~e~~c~~l~~~~~~~~--~~~~p~l~~l~~~l~~~~~~~~~~~~~L~ 747 (969)
....+-.+++-++..+.+-.. ....||+|.++..+...+... ..|..=.
T Consensus 263 ---~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~-~~pe~r~ 313 (986)
T 2iw3_A 263 ---RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI-ADPEARE 313 (986)
T ss_dssp ---SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC-CSHHHHH
T ss_pred ---CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc-CCHHHHH
Confidence 344444556666666555442 357788888888777666543 5555433
No 53
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.21 E-value=69 Score=35.27 Aligned_cols=132 Identities=9% Similarity=0.052 Sum_probs=72.0
Q ss_pred HHhHHHHHHHHHHh--hhc-cchHHHHHHHHHHHHHHHhh--hhhhHhhHHHHHHHHHHhhhhhcCcc-----cHHHHHH
Q 002084 681 LRVFWPMLEKLFRS--EHM-ENGNLSTAACRALSLAIQSS--GQHFVTLLPQVLDCLSTNFVSFQNHE-----CYIRTAS 750 (969)
Q Consensus 681 ~~~i~~~l~~il~~--~~~-~~~~v~e~~c~~l~~~~~~~--~~~~~p~l~~l~~~l~~~~~~~~~~~-----~~L~l~~ 750 (969)
.+++..++.....- .|. .|.+.+++...|+++++-.+ +.+...++.-+++.+.-.+..- +.+ -=|.++.
T Consensus 213 ~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L-~e~~~~~~~kL~LLK 291 (507)
T 3u0r_A 213 RQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTL-TTPVEGLDIQLEVLK 291 (507)
T ss_dssp HHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCC-CCC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhc-cccccchHHHHHHHH
Confidence 45666666665431 344 79999999999999997755 4456667777777766555432 111 2355666
Q ss_pred HHHHH--hcC-CCCcchhHHHHHHHHhhHHHHHHhhcC----CC-CCCCCc----HHHHHHHHHHHHHHhhhHHHHh
Q 002084 751 VVIEE--FGH-KDEYGPLFVTTFERFSQAASVRALNSS----YI-CDQEPD----LVEAYTNFASTFVRTSRKEVLA 815 (969)
Q Consensus 751 ~li~~--~g~-~~~~~~~~~~l~~~l~~~~~l~~l~~~----~~-~~~~pD----l~~~~f~l~~~~l~~~p~~ll~ 815 (969)
.+.+. |-. .+.....+..++..|... ++..... .+ -...|+ .++.++-.++++.+++|..+..
T Consensus 292 ~lAE~s~~~~~~e~a~~~l~~iy~~L~~y--mP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e 366 (507)
T 3u0r_A 292 LLAEMSSFCGDMEKLETNLRKLFDKLLEY--MPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA 366 (507)
T ss_dssp HHHHHHTTCCCCTTHHHHHHHHHHHHHTT--SCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred HHHHHccCCCccchHHHHHHHHHHHHHHH--CCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc
Confidence 55432 322 222222344444433321 1100000 00 001233 3677888889999999998855
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=79.81 E-value=85 Score=35.31 Aligned_cols=303 Identities=11% Similarity=0.099 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhhHHHHHhChhch--HHHHHHHHHhcccC--chhHHHHHHHHHHHHH---hhcccCCCccHHHHHHHHH
Q 002084 504 IVYRSLADVIGSYSKWISAFQTNA--RPLLLFLAAGISEA--VSSNACASALRKICED---ASALIDEPSNLEILMWIGE 576 (969)
Q Consensus 504 v~~~t~~~lig~ys~wl~~~p~~L--~~~l~~l~~~l~~~--~~~~~Aa~al~~lc~~---c~~~l~~~~~~~~l~~~~~ 576 (969)
++..+ ++.++..+.--..+...+ ..+++.|+..|.++ .++..|+.|+.+||.+ |+..+.....++.+..+..
T Consensus 117 lq~~A-a~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 117 IQFES-AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp HHHHH-HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHH-HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 34434 377777653211122222 14678888888865 4899999999999854 4544322123444444442
Q ss_pred HHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhh
Q 002084 577 ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRM 656 (969)
Q Consensus 577 ~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L 656 (969)
.-...............+++.+...-.+... ......++ ..+.+++... ++.. ...++..|..|
T Consensus 196 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~l----p~L~~LL~~~-------~~~v----~~~A~~aL~~L 259 (510)
T 3ul1_B 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPP-LDAVEQIL----PTLVRLLHHN-------DPEV----LADSCWAISYL 259 (510)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCSSCCC-HHHHHHHH----HHHHHHTTCS-------CHHH----HHHHHHHHHHH
T ss_pred hccchhhhHHHHHHHHHHHHHHhhcccchhH-HHHHHhHH----HHHHHHHhcC-------CHHH----HHHHHHHHHHH
Confidence 1001112223344555666666554322111 12222333 2333344321 1111 12334444443
Q ss_pred hhhcccccccCCCCCCCCchHHHH-HHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHH-HHHHHHHH
Q 002084 657 GTVFSHLPVPLPTNPAGDDPIFAL-LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLP-QVLDCLST 734 (969)
Q Consensus 657 ~~i~~~l~~~~~~~~~~~~p~~~~-~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~-~l~~~l~~ 734 (969)
+ .+-. +-...+ -..+.|.+..++. ..+..+.+.++++++.....-......++. ..+..+..
T Consensus 260 ~---~~~~----------~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~ 323 (510)
T 3ul1_B 260 T---DGPN----------ERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 323 (510)
T ss_dssp T---SSCH----------HHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-
T ss_pred h---hchh----------hhHHHHHhcccchhhhhhhc---CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHH
Confidence 3 1100 000011 1234566666664 256788888888888765432211111110 01111111
Q ss_pred hhhhhcCcccHHHHHHHHHHHhcCCCCcchhHHHHHH-HHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhh-hHH
Q 002084 735 NFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFE-RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTS-RKE 812 (969)
Q Consensus 735 ~~~~~~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~-~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~-p~~ 812 (969)
.. .. +....-.-+...+........ .....+.. .+.... +..+. ..++++.......+..+.... +..
T Consensus 324 LL-~~-~~~~v~~~A~~aL~nl~a~~~--~~~~~v~~~g~i~~L-v~lL~-----~~~~~v~~~Aa~aL~Nl~~~~~~~~ 393 (510)
T 3ul1_B 324 LL-TN-PKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFL-VGVLS-----KADFKTQKEAAWAITNYTSGGTVEQ 393 (510)
T ss_dssp CT-TC-SSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHH-HHHHH-----SSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred Hh-cC-CCHHHHHHHHHHHHHHHcCcH--HHHHHHHhcCCHHHH-HHHHc-----CCCHHHHHHHHHHHHHHHccCCHHH
Confidence 11 11 222233334444444433211 11111111 011111 12232 356788887776666666542 222
Q ss_pred ---HHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhh
Q 002084 813 ---VLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECL 855 (969)
Q Consensus 813 ---ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~ 855 (969)
+... +.++.+++ -|...++.....++..+.+++....
T Consensus 394 ~~~L~~~--g~i~~L~~----LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 394 IVYLVHC--GIIEPLMN----LLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHHHHT--TCHHHHHH----GGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 3322 45555544 5778888899999998888886543
No 55
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=76.83 E-value=11 Score=35.65 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=78.0
Q ss_pred HHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhc
Q 002084 459 TKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI 538 (969)
Q Consensus 459 a~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l 538 (969)
-.-|+++-|+...++ . ++.++.=+..+.+.|. +.. +. +++++||... ..|+.|..|-|+-|+.-|
T Consensus 126 n~~yaLeeIaranP~----l-~~~v~rdi~smltskd-~~D-----kl-~aLnFi~alG---en~~~yv~PfLprL~aLL 190 (253)
T 2db0_A 126 NVSYALEEIAKANPM----L-MASIVRDFMSMLSSKN-RED-----KL-TALNFIEAMG---ENSFKYVNPFLPRIINLL 190 (253)
T ss_dssp HHHHHHHHHHHHCHH----H-HHHHHHHHHHHTSCSS-HHH-----HH-HHHHHHHTCC---TTTHHHHGGGHHHHHGGG
T ss_pred cHHHHHHHHHHhChH----H-HHHHHHHHHHHhcCCC-hHH-----HH-HHHHHHHHHh---ccCccccCcchHHHHHHH
Confidence 345777777665542 1 3566664444444443 211 33 3368898887 478999999999999999
Q ss_pred ccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002084 539 SEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (969)
Q Consensus 539 ~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (969)
++.+ ++.+|..++-+++....+ .-+.+....+.+ ..-+......+.+|++.++-.
T Consensus 191 ~D~deiVRaSaVEtL~~lA~~npk------lRkii~~kl~e~--~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 191 HDGDEIVRASAVEALVHLATLNDK------LRKVVIKRLEEL--NDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp GCSSHHHHHHHHHHHHHHHTSCHH------HHHHHHHHHHHC--CCSCHHHHHHHHHHHHHHHHC
T ss_pred cCcchhhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHH
Confidence 9865 889999999999864333 223333333332 233466778889999987643
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=71.51 E-value=16 Score=38.03 Aligned_cols=139 Identities=10% Similarity=-0.006 Sum_probs=74.8
Q ss_pred CChhHhHHHHHHHHhhhhccccCCccc-chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh-ch-H
Q 002084 452 IPWKEVETKLFALNVVSEVVLQEGQAF-DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT-NA-R 528 (969)
Q Consensus 452 ~~W~~~Ea~Lf~l~~iae~~~~~~~~~-~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~-~L-~ 528 (969)
.+-.-.+.++++++.++...+.-.... ....+..++..+.+.+... ++..+ ++.|+..+.-....++ +. .
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~------v~~~A-~~ALsnl~~~~~~~~~~~~~~ 166 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT------VRVKA-LFAISCLVREQEAGLLQFLRL 166 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHH------HHHHH-HHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHH------HHHHH-HHHHHHHHcCCcHHHHHHHHC
Confidence 456778899999999876433100000 0012333333333232211 44444 4777775531111111 22 1
Q ss_pred HHHHHHHHhccc--CchhHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccC
Q 002084 529 PLLLFLAAGISE--AVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (969)
Q Consensus 529 ~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~---~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~l 602 (969)
..++.|...|.+ +.++..|+.++.++|..-.. .+.....++.|..+. .. -+...++....+++.++..-
T Consensus 167 ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL---~~--~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV---RT--EHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHH---TS--CCSTHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHH---cC--CChhHHHHHHHHHHHHHhCC
Confidence 356666666665 45899999999999976221 111111233333332 22 25678999999999999873
No 57
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=70.45 E-value=35 Score=43.35 Aligned_cols=64 Identities=3% Similarity=-0.106 Sum_probs=45.3
Q ss_pred CCCcHHHHHHHHHHHHHHhhhHHHHh----ccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002084 790 QEPDLVEAYTNFASTFVRTSRKEVLA----ASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (969)
Q Consensus 790 ~~pDl~~~~f~l~~~~l~~~p~~ll~----~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~ 853 (969)
++.|..+.+-+++..+....-..+.. ...+.+..+++..+..+..++.+....++.||..++..
T Consensus 314 ~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 314 KHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 35677777777777777643332221 12356778888888888888888888999999988854
No 58
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=69.93 E-value=1.5e+02 Score=33.31 Aligned_cols=262 Identities=12% Similarity=0.030 Sum_probs=140.2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHh---cCh--------HHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcC
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQ---QTD--------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q---~s~--------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~ 77 (969)
|+..|..++ +.|++.+.+|-+.++++= +.| .+-....++|...+ ++++|+-||-.|.+--.
T Consensus 59 i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~-----~~~lq~~Aa~aL~nias-- 130 (510)
T 3ul1_B 59 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-----CSPIQFESAWALTNIAS-- 130 (510)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT-----CHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC-----CHHHHHHHHHHHHHHhc--
Confidence 667777777 568888888888888762 222 13445567776543 36899999999976443
Q ss_pred cCCCChHHHHHHHHH-HHHHHHHh-cCCChHHHHHHHHHHHHHHchhcc------CCchHHHHHHHhhcccCCCc---ch
Q 002084 78 GYYLQSAAKDALLNA-LLVAAKRF-SSGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDN---GN 146 (969)
Q Consensus 78 ~~~l~~~~~~~Lr~~-Ll~~l~~~-~~~~~~v~~kL~~aLa~l~l~~~~------W~~~i~~li~~l~~~~~~~~---~~ 146 (969)
-++++...+.+. .+..+.++ ..++..|+.+.+.+|..++...+. -...++-++..+........ ..
T Consensus 131 ---~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~ 207 (510)
T 3ul1_B 131 ---GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207 (510)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred ---CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHH
Confidence 245555555443 44444443 356678999999999999865331 13445556666643210000 11
Q ss_pred HHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHc
Q 002084 147 MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRA 226 (969)
Q Consensus 147 ~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~ 226 (969)
......+..+...-. . . .... ....++..|...+.+ ++..++..+..|+..-...
T Consensus 208 ~~a~~~L~nl~~~~~---~-~--~~~~-----------~~~~~lp~L~~LL~~--------~~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKN---P-A--PPLD-----------AVEQILPTLVRLLHH--------NDPEVLADSCWAISYLTDG 262 (510)
T ss_dssp HHHHHHHHHHHCCCS---S-C--CCHH-----------HHHHHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhccc---c-h--hHHH-----------HHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHHHhhc
Confidence 223334443333211 0 0 0100 112333444444443 2345677777666543221
Q ss_pred cccccccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcCCChhHHHHh-hhhhhHHhhhhhhhccCchhHHhh
Q 002084 227 GCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGG 303 (969)
Q Consensus 227 ~~~~~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~d~~~~ 303 (969)
. .-....+.....++.+.+.|.++ .+...|+.++..+....+.....++. ..+. .+. ..+.+.+.+..+.
T Consensus 263 ~---~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~---~L~-~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 263 P---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA---VFP-SLLTNPKTNIQKE 335 (510)
T ss_dssp C---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG---GCC--CTTCSSHHHHHH
T ss_pred h---hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH---HHH-HHhcCCCHHHHHH
Confidence 1 00011234567788888888765 45678888888877654333333321 1111 111 1334556666666
Q ss_pred HHHHHHHHhh
Q 002084 304 LACLMSEIGQ 313 (969)
Q Consensus 304 l~~l~~~~~e 313 (969)
-|..+..++.
T Consensus 336 A~~aL~nl~a 345 (510)
T 3ul1_B 336 ATWTMSNITA 345 (510)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHc
Confidence 6666666643
No 59
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=69.83 E-value=1.5e+02 Score=33.39 Aligned_cols=294 Identities=11% Similarity=0.078 Sum_probs=134.4
Q ss_pred HHHHHhhHHHHHhChhch--HHHHHHHHHhcccC--chhHHHHHHHHHHHH---HhhcccCCCccHHHHHHHHHHHHhcC
Q 002084 510 ADVIGSYSKWISAFQTNA--RPLLLFLAAGISEA--VSSNACASALRKICE---DASALIDEPSNLEILMWIGEALEKRH 582 (969)
Q Consensus 510 ~~lig~ys~wl~~~p~~L--~~~l~~l~~~l~~~--~~~~~Aa~al~~lc~---~c~~~l~~~~~~~~l~~~~~~l~~~~ 582 (969)
++.++..+..-..+...+ ..+++.|+..+.++ .++..|+.|+.+||. .|+..+.....++.|..+...-....
T Consensus 141 a~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~ 220 (529)
T 3tpo_A 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLST 220 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhH
Confidence 367776653222222222 24678888888765 489999999999985 45554321113444444332100111
Q ss_pred CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhccc
Q 002084 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSH 662 (969)
Q Consensus 583 l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~ 662 (969)
........+..+++.+...-.+... ......++ ..+.+++... ++.. ...++..|..++ .+
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~l----p~L~~LL~~~-------~~~v----~~~a~~aL~~l~---~~ 281 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPP-LDAVEQIL----PTLVRLLHHN-------DPEV----LADSCWAISYLT---DG 281 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCC-HHHHHHHH----HHHHHHTTSS-------CHHH----HHHHHHHHHHHH---SS
T ss_pred hHHHHHHHHHHHHHHHHhcccchhh-HHHHhhHH----HHHHHHhcCC-------cHHH----HHHHHHHHHHhh---hh
Confidence 1223344555566665544322111 12222333 2333344322 1111 122333444333 11
Q ss_pred ccccCCCCCCCCchHHHH-HHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhH-----hhHHHHHHHHHHhh
Q 002084 663 LPVPLPTNPAGDDPIFAL-LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFV-----TLLPQVLDCLSTNF 736 (969)
Q Consensus 663 l~~~~~~~~~~~~p~~~~-~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~-----p~l~~l~~~l~~~~ 736 (969)
-. +-...+ -..+.|.+..++. ..+..+.+.++++++.....-..... ..++.++..+.
T Consensus 282 ~~----------~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--- 345 (529)
T 3tpo_A 282 PN----------ERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--- 345 (529)
T ss_dssp CH----------HHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT---
T ss_pred hh----------hhHHHHHhccchHHHHHHhc---CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc---
Confidence 00 000011 1335566666664 25778888888888876542211111 12222333221
Q ss_pred hhhcCcccHHHHHHHHHHHhcCCCCcchhHHHHHH-HHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhh-hHH--
Q 002084 737 VSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFE-RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTS-RKE-- 812 (969)
Q Consensus 737 ~~~~~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~-~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~-p~~-- 812 (969)
+ +....-.-+...+........ .....+.. .+.... +..+. ..++++.......+..+.... +..
T Consensus 346 --~-~~~~i~~~a~~aL~nl~~~~~--~~~~~v~~~g~i~~L-v~lL~-----~~~~~v~~~A~~aL~nl~~~~~~~~~~ 414 (529)
T 3tpo_A 346 --N-PKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFL-VGVLS-----KADFKTQKAAAWAITNYTSGGTVEQIV 414 (529)
T ss_dssp --C-SSHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHH-HHHHH-----SSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred --C-CCHHHHHHHHHHHHHHhcccH--HHHHHHHhcCcHHHH-HHHhc-----CCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 1 222222222233332222110 11111111 011111 12232 456788877776666666542 322
Q ss_pred -HHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhh
Q 002084 813 -VLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECL 855 (969)
Q Consensus 813 -ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~ 855 (969)
+... +.++.+++ -|...+......++..+.+++....
T Consensus 415 ~l~~~--g~i~~L~~----LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 415 YLVHC--GIIEPLMN----LLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHT--TCHHHHHH----GGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHC--cCHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 2322 45555444 5778888899999998888886543
No 60
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=68.47 E-value=1.1e+02 Score=31.12 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=65.1
Q ss_pred CchhhhhhHHHHHHHHHHhhccchhhhhhhhhhhhhhHHH-HHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHH
Q 002084 343 DWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSV-FSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLV 421 (969)
Q Consensus 343 d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~ 421 (969)
+..|..-++++-..+.+.+.+.+ ..+.++ ...++..++.|+- |.. ..+|..+.
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~-----------y~~~~~ea~~~lP~LveKlG------------d~k---~~vR~~~r 153 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTE-----------TPMSQEEVSAFVPYLLLKTG------------EAK---DNMRTSVR 153 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-----------CCCCHHHHHHHHHHHHHGGG------------CSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc-----------ccchHHHHHHHHHHHHHHhC------------CCh---HHHHHHHH
Confidence 45677788888777766543211 111111 2355667777873 111 46788999
Q ss_pred HHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhc
Q 002084 422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEV 470 (969)
Q Consensus 422 d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~ 470 (969)
+++..++.+..+..++..+.+++. +.+|+..|.+|..+.++-+.
T Consensus 154 ~il~~l~~v~~~~~v~~~l~~g~k-----sKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 154 DIVNVLSDVVGPLKMTPMLLDALK-----SKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHGGG-----CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHh
Confidence 999999988877777887777653 34699999999999887543
No 61
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=61.91 E-value=1e+02 Score=31.82 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHhccC-----------CChHHHHHHHHHHHHHhcCh---------HHHHHHHH-hhccCCCCCCccchh
Q 002084 4 DLQIKVAQAVHVLNHD-----------TESCNRVAANQWLVQFQQTD---------AAWEIATS-ILTSDRQSFLTDFEV 62 (969)
Q Consensus 4 ~~~~~v~~ai~~ly~~-----------~d~~~~~~A~~~L~~~Q~s~---------~aW~~~~~-LL~~~~~~~~~~~~v 62 (969)
+..+...+++..|-++ .+.+.|..|-.-|..+-+.. .+|..... +|.++ ++++
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~------~~~v 98 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG------AAGL 98 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS------SHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC------CHHH
Confidence 4566777888887653 12356777877777776653 24566667 78654 3699
Q ss_pred HHhhhHHHHHHhhcCcCCCChHHHHHHHH-HHHHHHHHhc--CCChHHHHHHHHHHHHHHchhcc------CCchHHHHH
Q 002084 63 EFFAAQILKRKIQNEGYYLQSAAKDALLN-ALLVAAKRFS--SGPPQLLTQICLALSALILRAVE------HGKPIEKLF 133 (969)
Q Consensus 63 ~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~-~Ll~~l~~~~--~~~~~v~~kL~~aLa~l~l~~~~------W~~~i~~li 133 (969)
|-.||.+|.+-... +++.+..+.+ ..+..|.++- ..+..++++.+-+|+.++-..+. -.+.++-++
T Consensus 99 r~~Aa~~Lg~ia~~-----n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~ 173 (296)
T 1xqr_A 99 RWRAAQLIGTCSQN-----VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM 173 (296)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhC-----CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH
Confidence 99999999876654 2333333322 2333333221 23568999999999999764331 134566666
Q ss_pred HHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhH
Q 002084 134 YSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRN 213 (969)
Q Consensus 134 ~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~ 213 (969)
..+++. +.....-..+.|..+...- .+.+..+.+ ....+.++.+| .. ++..++
T Consensus 174 ~lL~~~--d~~v~~~A~~aLs~L~~~~-----------~~~~~~vv~--~g~i~~Lv~LL----~~--------~d~~v~ 226 (296)
T 1xqr_A 174 RAMQQQ--VQKLKVKSAFLLQNLLVGH-----------PEHKGTLCS--MGMVQQLVALV----RT--------EHSPFH 226 (296)
T ss_dssp HHHHSS--CHHHHHHHHHHHHHHHHHC-----------GGGHHHHHH--TTHHHHHHHHH----TS--------CCSTHH
T ss_pred HHHcCC--CHHHHHHHHHHHHHHHhCC-----------hHHHHHHHH--cCCHHHHHHHH----cC--------CChhHH
Confidence 666642 2222233444444443320 111111111 11344445444 33 234588
Q ss_pred HHHHHHHHHHHHc
Q 002084 214 RKILRCLLSWVRA 226 (969)
Q Consensus 214 ~~~l~cl~sWi~~ 226 (969)
..++.++.+-+..
T Consensus 227 ~~al~aL~~l~~~ 239 (296)
T 1xqr_A 227 EHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 8999999887763
No 62
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=54.59 E-value=1.8e+02 Score=29.15 Aligned_cols=146 Identities=9% Similarity=-0.013 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHH-HhccC
Q 002084 415 QFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA-VLSAS 493 (969)
Q Consensus 415 ~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~-~l~~~ 493 (969)
..|......+.. +|.+..+..+...+. +.++.....++++|+.++..- .. ++.++.++. .+...
T Consensus 38 ~vr~~A~~~L~~----~~~~~~~~~L~~~l~-----d~~~~vR~~A~~aL~~l~~~~---~~---~~~l~~~L~~~~~~d 102 (280)
T 1oyz_A 38 LKRISSARVLQL----RGGQDAVRLAIEFCS-----DKNYIRRDIGAFILGQIKICK---KC---EDNVFNILNNMALND 102 (280)
T ss_dssp HHHHHHHHHHHH----HCCHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHSCCCT---TT---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc----cCCchHHHHHHHHHc-----CCCHHHHHHHHHHHHHhcccc---cc---chHHHHHHHHHHhcC
Confidence 345444444433 244445555554442 345777788889988775311 11 345555554 23333
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHH
Q 002084 494 RSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEIL 571 (969)
Q Consensus 494 ~~~~~~~~~~v~~~t~~~lig~ys~wl~~~p~~L~~~l~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~~~~~~~l 571 (969)
+.. .+|..+ +..+|.+.. .+|.+-+.+++.|...+.+++ ++..|+.++.++.. +...+.|
T Consensus 103 ~~~------~vr~~a-~~aL~~l~~---~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L 164 (280)
T 1oyz_A 103 KSA------CVRATA-IESTAQRCK---KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLL 164 (280)
T ss_dssp SCH------HHHHHH-HHHHHHHHH---HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHH
T ss_pred CCH------HHHHHH-HHHHHHHhc---cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHH
Confidence 331 256655 488887653 345566778888888888765 88888888877643 2245555
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHH
Q 002084 572 MWIGEALEKRHLPLEDEEEVVGAISLI 598 (969)
Q Consensus 572 ~~~~~~l~~~~l~~~~~~~l~eai~~i 598 (969)
..... .-+...|.....++|.+
T Consensus 165 ~~~l~-----d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 165 INLLK-----DPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHT-----CSSHHHHHHHHHHHHHH
T ss_pred HHHHc-----CCCHHHHHHHHHHHHhh
Confidence 55432 22456788888888876
No 63
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=54.29 E-value=3.4e+02 Score=32.27 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=134.3
Q ss_pred hccCCChHHHHHHHHHHHHHhc----------ChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHH
Q 002084 16 LNHDTESCNRVAANQWLVQFQQ----------TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (969)
Q Consensus 16 ly~~~d~~~~~~A~~~L~~~Q~----------s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~ 85 (969)
+..+.|+..|..|-.-|..+-+ .+++......+|..+. +.++|..|+.+|++ +..+ .+.
T Consensus 158 lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~-----d~~vr~~Aa~aL~~-Ls~~-----~~~ 226 (780)
T 2z6g_A 158 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTSGTLHN-LSHH-----REG 226 (780)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHH-HHTS-----HHH
T ss_pred HHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCC-----CHHHHHHHHHHHHH-HhCC-----chh
Confidence 3346788999999999988876 4456666666776532 47899999999997 5543 222
Q ss_pred HHHHHH-HHHHHHHHhc-CCChHHHHHHHHHHHHHHchhcc------CCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084 86 KDALLN-ALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (969)
Q Consensus 86 ~~~Lr~-~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~l~~~~------W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~ 157 (969)
+..+.+ ..+..|..+- .++..++..-+.+|..++..... =...++.++..+.+. +.......+..|..+.
T Consensus 227 ~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 227 LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILA 304 (780)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHh
Confidence 332222 3444554433 45677888888889988765321 135677777777652 2222333444444443
Q ss_pred hccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhh
Q 002084 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (969)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i 237 (969)
-. ..+.|..+.+. ...+.++.++ ... +.......+..++...-... -....+
T Consensus 305 ~~-----------~~e~~~~i~~~--~~i~~Lv~lL----~~~-------~~~~~~~~a~~aL~~Ls~~~----~~~~~i 356 (780)
T 2z6g_A 305 YG-----------NQESKLIILAS--GGPQALVNIM----RTY-------TYEKLLWTTSRVLKVLSVCS----SNKPAI 356 (780)
T ss_dssp TT-----------CHHHHHHHHTT--THHHHHHHHH----TTC-------CCHHHHHHHHHHHHHHHTST----THHHHH
T ss_pred cC-----------ChHHHHHHHHc--CCHHHHHHHH----hcC-------CHHHHHHHHHHHHHHhhcCh----HHHHHH
Confidence 21 11122211110 1233344433 321 12234444555555443211 112234
Q ss_pred cccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcCCCh--hHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhh
Q 002084 238 AAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGL--PQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (969)
Q Consensus 238 ~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~~~~--~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (969)
.....++.+...|.++ +....|+.++..+....... ...+++.+.. .+..+|.+.....+..+..++.
T Consensus 357 ~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~--------lL~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 357 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ--------LLGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH--------HTTCSCHHHHHHHHHHHHHHTS
T ss_pred HHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHh
Confidence 4566788888888765 35667777777776544321 1233333332 2234566666666666666644
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=51.37 E-value=1.6e+02 Score=27.75 Aligned_cols=137 Identities=17% Similarity=0.090 Sum_probs=86.6
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhc-ChH---------HHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCc
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQ-TDA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG 78 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~-s~~---------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~ 78 (969)
....+..|..++|+..+..|-..|..+-. +++ +......+|.++ +.+++..|+.+|.+-...
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~-- 84 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP------NEQILQEALWALSNIASG-- 84 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHTTS--
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC------CHHHHHHHHHHHHHHhcC--
Confidence 34456666667888999999999998874 343 345566777654 368999999999876542
Q ss_pred CCCChHHHHHHHH-HHHHHHHHh-cCCChHHHHHHHHHHHHHHchhcc------CCchHHHHHHHhhcccCCCcchHHHH
Q 002084 79 YYLQSAAKDALLN-ALLVAAKRF-SSGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVL 150 (969)
Q Consensus 79 ~~l~~~~~~~Lr~-~Ll~~l~~~-~~~~~~v~~kL~~aLa~l~l~~~~------W~~~i~~li~~l~~~~~~~~~~~~lL 150 (969)
+++.+..+.+ ..+..+..+ ..++..++...+.+|..++..... -...++.++..+.+. ++......+
T Consensus 85 ---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~ 159 (210)
T 4db6_A 85 ---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEAL 159 (210)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHH
T ss_pred ---CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHH
Confidence 2344433332 234444443 345678999999999999854321 245677788777652 233344555
Q ss_pred HHHhhchh
Q 002084 151 EMLTVLPE 158 (969)
Q Consensus 151 ~~L~~l~E 158 (969)
..|..+..
T Consensus 160 ~aL~~l~~ 167 (210)
T 4db6_A 160 WALSNIAS 167 (210)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555543
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.63 E-value=1.8e+02 Score=27.63 Aligned_cols=177 Identities=18% Similarity=0.087 Sum_probs=100.0
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHH
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~ 88 (969)
+...+..| .++++..|..|-..|.++.. +++......+|.++ +..+|..|+..|... . +++...
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~~------~~~vr~~a~~aL~~~-~------~~~~~~- 84 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE------DAWVRRAAADALGQI-G------DERAVE- 84 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------CHHHHHHHHHHHHHH-C------CGGGHH-
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcCC------CHHHHHHHHHHHHhh-C------CHHHHH-
Confidence 44445444 47799999999999999875 67777777888754 368999999988643 2 122222
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhc-cccc--cc
Q 002084 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--QA 165 (969)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE-~~~~--~~ 165 (969)
.|+..+ ...++.|+...+.+|+.+. .+..++.++..+... ++.........|..+.++ .... +.
T Consensus 85 ---~L~~~l---~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~ 151 (211)
T 3ltm_A 85 ---PLIKAL---KDEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKA 151 (211)
T ss_dssp ---HHHHHT---TCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred ---HHHHHH---cCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222222 2455778887777777653 245667777766532 222222333333333211 0000 00
Q ss_pred cccCCCHHHHHHHHHHHHh-hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHH
Q 002084 166 SDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSW 223 (969)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sW 223 (969)
+.. -....|......+.. ..+.++..|...+.. ++..++..+..++...
T Consensus 152 l~d-~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--------~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 152 LKD-EDGWVRQSAADALGEIGGERVRAAMEKLAET--------GTGFARKVAVNYLETH 201 (211)
T ss_dssp TTC-SSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH--------CCHHHHHHHHHHHHC-
T ss_pred HcC-CCHHHHHHHHHHHHHhCchhHHHHHHHHHhC--------CCHHHHHHHHHHHHhc
Confidence 000 123455555666655 445667777666554 2356888888887654
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=42.62 E-value=2.3e+02 Score=34.58 Aligned_cols=167 Identities=16% Similarity=0.212 Sum_probs=103.1
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHhccCCchH
Q 002084 529 PLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNKE 606 (969)
Q Consensus 529 ~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~ii~~lp~~~ 606 (969)
.++..+.+++.+..-...|+.++..||+.-... +...+.+..+...+-. ..-....|..--.++..++.++|++.
T Consensus 54 ~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~---~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTAANAMQAVAHIANQSNLS---PSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCC---TTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC---CCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 677777777776543488888899888654431 2245555444433321 23345677778889999999999754
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHH
Q 002084 607 LKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWP 686 (969)
Q Consensus 607 ~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~ 686 (969)
. ..++..++..+.. . ..|...+ .++..+..|. ... ++-+...+-.+.|
T Consensus 131 -~----~~~~~~~~~~~~~----~---------~kw~~k~-~~l~~~~~~~---~~~----------~~~~~~~~~~~~p 178 (986)
T 2iw3_A 131 -I----KALLPHLTNAIVE----T---------NKWQEKI-AILAAFSAMV---DAA----------KDQVALRMPELIP 178 (986)
T ss_dssp -H----HHHHHHHHHHHHH----C---------CCHHHHH-HHHHHHHHHH---HHS----------HHHHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHhcc----c---------cchHHHH-HHHHHHHHHH---HHh----------HHHHHHhccchhc
Confidence 3 3445444444421 1 0131111 2334444443 211 1123345677888
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhh-hhhHhhHHHHHHHHH
Q 002084 687 MLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFVTLLPQVLDCLS 733 (969)
Q Consensus 687 ~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~-~~~~p~l~~l~~~l~ 733 (969)
++...+ |....+|..+...++.+....++ .++.|++|.+++.+.
T Consensus 179 ~~~~~~---~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 179 VLSETM---WDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223 (986)
T ss_dssp HHHHHT---TCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH
T ss_pred chHhhc---ccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc
Confidence 888874 77788999999999888887764 589999999888775
No 67
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=42.60 E-value=2.8e+02 Score=27.95 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=98.1
Q ss_pred chhHHhhhHHHHHHhhcCcCCCChHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHchhccCCchHHHHHHHhhc
Q 002084 60 FEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAK-RFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQN 138 (969)
Q Consensus 60 ~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~~Ll~~l~-~~~~~~~~v~~kL~~aLa~l~l~~~~W~~~i~~li~~l~~ 138 (969)
..-+.=|...|...+.. .++.....-+-++.|+. ++...+..|..+....|..++-.+. .
T Consensus 60 ~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~--------------~ 120 (266)
T 2of3_A 60 FKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIR--------------D 120 (266)
T ss_dssp HHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH--------------h
Confidence 45556677777766653 23444445555788775 5666677787777777666653322 1
Q ss_pred ccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHH---HHh--hhhHHHHHHHHhHhhccCCCCCcchhhhH
Q 002084 139 LQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQE---LLS--HTPMVVEFLMQQSDKRFDGGVPVQLHDRN 213 (969)
Q Consensus 139 ~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~---l~~--~~~~v~~~l~~~l~~~~~~~~~~~~~~~~ 213 (969)
.+ ..-.-.-...++-.|.|-++|.+ +.-|..+++. +.. ....|+.++...+.+ .+...+
T Consensus 121 ~~-y~~~~~ea~~~lP~LveKlGd~k-------~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ks--------KN~R~R 184 (266)
T 2of3_A 121 TE-TPMSQEEVSAFVPYLLLKTGEAK-------DNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKS--------KNARQR 184 (266)
T ss_dssp TT-CCCCHHHHHHHHHHHHHGGGCSS-------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGC--------SCHHHH
T ss_pred cc-ccchHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHcc--------CCHHHH
Confidence 10 00001112234445556665431 2334433332 222 234477777766644 346789
Q ss_pred HHHHHHHHHHHHccccccccchhhcccchH---HHHHhhcCCC--CcHHHHHHHHHHHHhcCC
Q 002084 214 RKILRCLLSWVRAGCFTEISQGSLAAHPLL---NFVFNSLQVQ--SSFDVAIEVLVELVGRHE 271 (969)
Q Consensus 214 ~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll---~~~~~~L~~~--~~~~~a~~~l~ei~~~~~ 271 (969)
..++.++.+-|.-- ++++ ...+ +.+-..++++ +.+++|+.|+.++.....
T Consensus 185 ~e~l~~l~~li~~~---G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 185 SECLLVIEYYITNA---GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHHHHH---CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc---CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999988642 2221 2245 7777888866 579999999999876543
No 68
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=40.57 E-value=3.3e+02 Score=32.42 Aligned_cols=118 Identities=9% Similarity=0.098 Sum_probs=64.7
Q ss_pred HHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhh-----hcCcccHHHHHHHHHH
Q 002084 680 LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVS-----FQNHECYIRTASVVIE 754 (969)
Q Consensus 680 ~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~-----~~~~~~~L~l~~~li~ 754 (969)
..+.+.|++... .|.++..++...+.+++...---.....-++|.+++.+....+. +++....|..+..++.
T Consensus 336 fV~~l~p~~~~g---~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 336 IVEIFLNIISLG---SQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHH---HTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHH---hCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 345556655543 48899999999999988765422211233556777766655433 2233334555555544
Q ss_pred HhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhh
Q 002084 755 EFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR 810 (969)
Q Consensus 755 ~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p 810 (969)
..-..+.+.+.+..++..+ ++.+. .+||+-....+.|+..+...-|
T Consensus 413 ~lv~~~~yr~hl~~lL~l~-----LpgID-----~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 413 FIVMDKLYRVHITNVLSML-----VSKLD-----MNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHTTSTTGGGHHHHHHHHH-----HHTCC-----SSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHhcCcccHHHHHHHHHHH-----hccCC-----cccHHHHHHHHHHHHHHHHhcc
Confidence 4443334555554444422 11111 3556666667777777766544
No 69
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=36.66 E-value=1e+02 Score=31.22 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=46.6
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhh
Q 002084 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECL 855 (969)
Q Consensus 789 ~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~ 855 (969)
.-+|-++.+.+.++.++++.+....... .+.+..++.....++...++.+-.++.+++..+..+.+
T Consensus 150 ~Knpkv~~~~l~~l~~~l~~fg~~~~~~-k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 150 KKLPKLIAAAANCVYELMAAFGLTNVNV-QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTTTCCH-HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCcCCc-hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3579999999999999999864332221 13455566666677888888888888888777775544
No 70
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=36.42 E-value=3.1e+02 Score=26.62 Aligned_cols=133 Identities=17% Similarity=0.054 Sum_probs=83.3
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhc-ChH---------HHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCC
Q 002084 12 AVHVLNHDTESCNRVAANQWLVQFQQ-TDA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (969)
Q Consensus 12 ai~~ly~~~d~~~~~~A~~~L~~~Q~-s~~---------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l 81 (969)
.+..+..++++..+..|-..|..+-. +++ +......+|.++ +.+++..|+.+|.+-...
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~----- 126 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP------NEQILQEALWALSNIASG----- 126 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS------CHHHHHHHHHHHHHHTTS-----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC------CHHHHHHHHHHHHHhhcC-----
Confidence 34444456678889999999999887 444 556666777664 368999999999866442
Q ss_pred ChHH-HHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHchhcc------CCchHHHHHHHhhcccCCCcchHHHHHHH
Q 002084 82 QSAA-KDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (969)
Q Consensus 82 ~~~~-~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~l~~~~------W~~~i~~li~~l~~~~~~~~~~~~lL~~L 153 (969)
++.. ...+....+..+.++- .++..++...+.+|..++..... =...++.++..+.+. ++......+..|
T Consensus 127 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L 204 (252)
T 4db8_A 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWAL 204 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHH
T ss_pred CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHH
Confidence 2222 2223333555555533 45678899999999998864321 145677777777642 233344555566
Q ss_pred hhch
Q 002084 154 TVLP 157 (969)
Q Consensus 154 ~~l~ 157 (969)
..+.
T Consensus 205 ~~l~ 208 (252)
T 4db8_A 205 SNIA 208 (252)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5554
No 71
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=33.98 E-value=5.8e+02 Score=29.15 Aligned_cols=258 Identities=14% Similarity=0.049 Sum_probs=127.1
Q ss_pred hHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHH------HHHHHHHHHHHHhcCCChHHHHHHH
Q 002084 39 DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD------ALLNALLVAAKRFSSGPPQLLTQIC 112 (969)
Q Consensus 39 ~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~------~Lr~~Ll~~l~~~~~~~~~v~~kL~ 112 (969)
..+......+|..+ +..+|..|+.+|.+-.... +.+. ..-..|+..+.. ..+..++..-+
T Consensus 13 ~g~i~~Lv~lL~~~------~~~vr~~A~~~L~~La~~~------~~~~~i~~~~~~i~~Lv~~L~~--~~~~~~~~~A~ 78 (644)
T 2z6h_A 13 TRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------ASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTA 78 (644)
T ss_dssp TTTHHHHHHHHTCS------CHHHHHHHHHHHHHHHTST------THHHHHTTCHHHHHHHHHHHHS--CCCHHHHHHHH
T ss_pred hchHHHHHHHHcCC------CHHHHHHHHHHHHHHHCCC------hhHHHHHhccChHHHHHHHHhc--CCCHHHHHHHH
Confidence 33456666777643 3688888888887655432 1121 222333333331 22566777777
Q ss_pred HHHHHHHchhcc-----CCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhh
Q 002084 113 LALSALILRAVE-----HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187 (969)
Q Consensus 113 ~aLa~l~l~~~~-----W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~ 187 (969)
.+|..++..... =...++.++..+++. ++......+..|..+...-. ..+.. +.. .
T Consensus 79 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~-----------~~~~~----v~~--~ 139 (644)
T 2z6h_A 79 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQE-----------GAKMA----VRL--A 139 (644)
T ss_dssp HHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHST-----------THHHH----HHH--T
T ss_pred HHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcc-----------hhHHH----HHH--C
Confidence 777766543210 125667777777652 22233444555555443210 01111 111 1
Q ss_pred HHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCCC---cHHHHHHHHH
Q 002084 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLV 264 (969)
Q Consensus 188 ~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~~---~~~~a~~~l~ 264 (969)
.++..|...+... +..++..+..|+..|..-. .-....+.....++.+.+.|.+.. ....++.++.
T Consensus 140 g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~La~~~---~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 140 GGLQKMVALLNKT--------NVKFLAITTDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208 (644)
T ss_dssp THHHHHHHGGGCC--------CHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHCcC--------CHHHHHHHHHHHHHHHhcC---cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2333344444431 2457777888888887521 001112344566777777777653 3455666665
Q ss_pred HHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHHHHHHHHhhhhhHHHHhcChhHHHHHHHHHhcccCCCCCc
Q 002084 265 ELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDW 344 (969)
Q Consensus 265 ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~lL~~~~~p~~d~ 344 (969)
.+.. ..+....+... ...+.+. ..+.+.+.+..+..+..+..++..... .......+..|+.+...+ +.
T Consensus 209 nLs~-~~~~~~~l~~~--g~l~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~-----~~~~~~~i~~Lv~lL~~~--d~ 277 (644)
T 2z6h_A 209 VLSV-CSSNKPAIVEA--GGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSD--DI 277 (644)
T ss_dssp HHTT-CTTHHHHHHHT--THHHHHH-TTTTCSCHHHHHHHHHHHHHHGGGCTT-----CCSCHHHHHHHHHHTTCS--CH
T ss_pred HHhc-CcccHHHHHHC--CCHHHHH-HHHhcCCHHHHHHHHHHHHHHhhcchh-----hhhhhhHHHHHHHHHcCC--CH
Confidence 5543 22222222210 0011111 133445666667777777777554311 111235667777776664 45
Q ss_pred hhhhhhH
Q 002084 345 EIADSTL 351 (969)
Q Consensus 345 ~v~~~~~ 351 (969)
++.+.+.
T Consensus 278 ~v~~~a~ 284 (644)
T 2z6h_A 278 NVVTCAA 284 (644)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 72
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=26.30 E-value=7.7e+02 Score=28.10 Aligned_cols=216 Identities=15% Similarity=0.083 Sum_probs=117.4
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChH---------HHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcC
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY 79 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~---------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~ 79 (969)
+...+..|.++.+++.+..|-..|..+-+.++ +......+|.++ +..+++.|+.+|.+-....
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~nL~~~~-- 129 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP------VDSVLFYAITTLHNLLLHQ-- 129 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS------SHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHhCc--
Confidence 45555566655688889999999998887655 334445566543 4689999999998776642
Q ss_pred CCChHHHHHHH-HHHHHHHHHhc-CCChHHHHHHHHHHHHHHchhcc------CCchHHHHHHHhhcccCCCcchHHHHH
Q 002084 80 YLQSAAKDALL-NALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLE 151 (969)
Q Consensus 80 ~l~~~~~~~Lr-~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~l~~~~------W~~~i~~li~~l~~~~~~~~~~~~lL~ 151 (969)
++.+..++ ...+..+.++- .++..++...+.+|..++..... =.+.++.++..+.+.. .....+..+.
T Consensus 130 ---~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~ 205 (644)
T 2z6h_A 130 ---EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSR 205 (644)
T ss_dssp ---TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred ---chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHH
Confidence 23333333 34555555433 34555666666677777753210 1345677777776431 1122334455
Q ss_pred HHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHcccccc
Q 002084 152 MLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTE 231 (969)
Q Consensus 152 ~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~ 231 (969)
+|..+... ...|..+ ... .++..+...+.. .+..++..++.++..-....
T Consensus 206 ~L~nLs~~------------~~~~~~l----~~~--g~l~~L~~ll~~--------~~~~~~~~a~~~L~nL~~~~---- 255 (644)
T 2z6h_A 206 VLKVLSVC------------SSNKPAI----VEA--GGMQALGLHLTD--------PSQRLVQNCLWTLRNLSDAA---- 255 (644)
T ss_dssp HHHHHTTC------------TTHHHHH----HHT--THHHHHHTTTTC--------SCHHHHHHHHHHHHHHGGGC----
T ss_pred HHHHHhcC------------cccHHHH----HHC--CCHHHHHHHHhc--------CCHHHHHHHHHHHHHHhhcc----
Confidence 55555421 0112222 111 123333333332 23457777777777654432
Q ss_pred ccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHh
Q 002084 232 ISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVG 268 (969)
Q Consensus 232 ~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~ 268 (969)
+ ......+.++.+.+.|.++ +....|+.++..+..
T Consensus 256 -~-~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 256 -T-KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp -T-TCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred -h-hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1 1112235677777777643 445666666665544
No 73
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.52 E-value=2.1e+02 Score=27.10 Aligned_cols=122 Identities=16% Similarity=0.039 Sum_probs=78.2
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHH
Q 002084 11 QAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALL 90 (969)
Q Consensus 11 ~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr 90 (969)
..+..+..++++..|..|-..|.++.. +++......+|.++ +..+|..|+..|..- .. ++. .
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~------~~~vr~~a~~aL~~~-~~------~~~----~ 145 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD-ERAVEPLIKALKDE------DWFVRIAAAFALGEI-GD------ERA----V 145 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------SHHHHHHHHHHHHHH-CC------GGG----H
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHhCC------CHHHHHHHHHHHHHc-CC------HHH----H
Confidence 334444567899999999999999864 67788888888654 368999999999653 21 122 2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHchhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhcc
Q 002084 91 NALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEV 160 (969)
Q Consensus 91 ~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE~ 160 (969)
..|...+ ...++.|+...+.+|..+. -+..++.+...+... ++.......+.|..+...-
T Consensus 146 ~~L~~~l---~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKAL---KDEDGWVRQSAADALGEIG-----GERVRAAMEKLAETG--TGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHT---TCSSHHHHHHHHHHHHHHC-----SHHHHHHHHHHHHHC--CHHHHHHHHHHHHC-----
T ss_pred HHHHHHH---cCCCHHHHHHHHHHHHHhC-----chhHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCC
Confidence 2233322 2456789999999999984 245666677666642 3344556667776666543
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.16 E-value=4.1e+02 Score=24.59 Aligned_cols=175 Identities=18% Similarity=0.087 Sum_probs=95.0
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHH
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~ 88 (969)
....|..| .++|+..|..|-..|.++.. +.+......+|.++ +..+|..|+..|... . +++...
T Consensus 16 ~~~~i~~L-~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~~~------~~~vr~~a~~~L~~~-~------~~~~~~- 79 (201)
T 3ltj_A 16 VEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE------DAWVRRAAADALGQI-G------DERAVE- 79 (201)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------SHHHHHHHHHHHHHH-C------CGGGHH-
T ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHcCC------CHHHHHHHHHHHHhh-C------CHHHHH-
Confidence 44555555 46789999999999999875 45666667777643 368999999888643 2 112222
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhchhc-cccc--cc
Q 002084 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--QA 165 (969)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~EE-~~~~--~~ 165 (969)
.|+..+ ...++.|+...+.+|..+. -+..++.++..+... ++.......+.|..+..+ .... +.
T Consensus 80 ---~L~~~l---~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~ 146 (201)
T 3ltj_A 80 ---PLIKAL---KDEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKA 146 (201)
T ss_dssp ---HHHHHT---TCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred ---HHHHHH---cCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 222222 2455778887777777653 245667777766532 222222333333332211 0000 00
Q ss_pred cccCCCHHHHHHHHHHHHh-hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHH
Q 002084 166 SDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLL 221 (969)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~ 221 (969)
+.. -....|......+.. ..+.++..|...+.. ++..++..+.+.+.
T Consensus 147 l~d-~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d--------~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 147 LKD-EDGWVRQSAADALGEIGGERVRAAMEKLAET--------GTGFARKVAVNYLE 194 (201)
T ss_dssp TTC-SSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH--------CCHHHHHHHHHHHH
T ss_pred HcC-CCHHHHHHHHHHHHHhCchhHHHHHHHHHhC--------CCHHHHHHHHHHHH
Confidence 000 123455555555555 345666666665543 23456666666554
No 75
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.28 E-value=2.4e+02 Score=26.32 Aligned_cols=117 Identities=16% Similarity=0.044 Sum_probs=74.7
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHHHHHHHH
Q 002084 12 AVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLN 91 (969)
Q Consensus 12 ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~~~~Lr~ 91 (969)
.+..+..++++..|..|-..|.++.. +++......+|.++ +..+|..|+..|..- .. ++.. .
T Consensus 80 ~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~------~~~vr~~a~~aL~~~-~~------~~~~----~ 141 (201)
T 3ltj_A 80 PLIKALKDEDGWVRQSAAVALGQIGD-ERAVEPLIKALKDE------DWFVRIAAAFALGEI-GD------ERAV----E 141 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------SHHHHHHHHHHHHHH-TC------GGGH----H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHcCC------CHHHHHHHHHHHHHh-CC------HHHH----H
Confidence 34444557899999999999999864 67788888888654 368999999998643 21 1221 2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHchhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhc
Q 002084 92 ALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (969)
Q Consensus 92 ~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l 156 (969)
.|...+ ...++.|+...+.+|..+. .+..++.+...+... ++.......+.|..+
T Consensus 142 ~L~~~l---~d~~~~vr~~A~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 142 PLIKAL---KDEDGWVRQSAADALGEIG-----GERVRAAMEKLAETG--TGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHT---TCSSHHHHHHHHHHHHHHC-----SHHHHHHHHHHHHHC--CHHHHHHHHHHHHHC
T ss_pred HHHHHH---cCCCHHHHHHHHHHHHHhC-----chhHHHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 222222 2456788888888888883 345666666666542 233334444544443
No 76
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=22.67 E-value=7.7e+02 Score=26.86 Aligned_cols=220 Identities=13% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChH---------HHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcC
Q 002084 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY 79 (969)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~---------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~ 79 (969)
+...+..|.+++|+..+..|-..|..+-+.++ +-.....+|.+++ +.++..|+.+|.+-...+-+
T Consensus 61 i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~ 134 (529)
T 1jdh_A 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV------DSVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC------HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC------HHHHHHHHHHHHHHhcCCcc
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc------cCCchHHHHHHHhhcccCCCcchHHHHHHH
Q 002084 80 YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (969)
Q Consensus 80 ~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~------~W~~~i~~li~~l~~~~~~~~~~~~lL~~L 153 (969)
.-..-...+.-..|+..+. .++..++...+.+|..++.... .-.+.++.++..+.... ..........+|
T Consensus 135 ~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L 210 (529)
T 1jdh_A 135 AKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVL 210 (529)
T ss_dssp HHHHHHHHTHHHHHHHGGG---CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHH
Q ss_pred hhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccc
Q 002084 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (969)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~ 233 (969)
..+.. ....|..+.+. .++..+...+.. .+..++..++.++..-... +
T Consensus 211 ~~l~~------------~~~~~~~~~~~------g~~~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~------~ 258 (529)
T 1jdh_A 211 KVLSV------------CSSNKPAIVEA------GGMQALGLHLTD--------PSQRLVQNCLWTLRNLSDA------A 258 (529)
T ss_dssp HHHTT------------STTHHHHHHHT------THHHHHHTTTTS--------SCHHHHHHHHHHHHHHHTT------C
T ss_pred HHHhc------------CcccHHHHHHC------CCHHHHHHHHhC--------CChHHHHHHHHHHHHHhcC------C
Q ss_pred chhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHHhcC
Q 002084 234 QGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (969)
Q Consensus 234 ~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~~~~ 270 (969)
.......+.++.+.+.|.++ +....|+.++..+....
T Consensus 259 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
No 77
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=20.58 E-value=1.1e+03 Score=27.90 Aligned_cols=236 Identities=12% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHH--------hhccCCCCCCccchhHHhhhHHHHHHh----
Q 002084 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATS--------ILTSDRQSFLTDFEVEFFAAQILKRKI---- 74 (969)
Q Consensus 7 ~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~--------LL~~~~~~~~~~~~v~ffaA~tL~~kI---- 74 (969)
+.+...+..+.++.++..+.+|-..|......++....... |+...+ ..+|.+|+..|.+-=
T Consensus 289 ~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~------~~vr~~Al~~L~kl~s~~~ 362 (810)
T 3now_A 289 EGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKN------DGIRVRALVGLCKLGSYGG 362 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHHTTTT
T ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCC------HHHHHHHHHHHHHhccccc
Q ss_pred -hcCcCCCChHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHchhc---cC---CchHHHHHHHhhcccCCCcc
Q 002084 75 -QNEGYYLQSAAKDALLNALLVAAKRFSSG--PPQLLTQICLALSALILRAV---EH---GKPIEKLFYSLQNLQSQDNG 145 (969)
Q Consensus 75 -~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~--~~~v~~kL~~aLa~l~l~~~---~W---~~~i~~li~~l~~~~~~~~~ 145 (969)
...-..+.+.....|-..+..+|. ++ +.-++..-+.+|+.+..... .| ..+++.|+..+++. ++..
T Consensus 363 ~d~~~~~~~~g~i~~Lv~~l~~lL~---~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~--d~~i 437 (810)
T 3now_A 363 QDAAIRPFGDGAALKLAEACRRFLI---KPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG--NQSC 437 (810)
T ss_dssp TTTSCCSSTTTHHHHHHHHHHHHHH---CSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT--CGGG
T ss_pred cCccccchhhccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC--ChHH
Q ss_pred hHHHHHHHhhchhccc--------------cccccccCCCHHHHHHHH---HHHHhhhhHHHHHHHHhHhhccCCCCCcc
Q 002084 146 NMAVLEMLTVLPEEVI--------------DSQASDCNISSAHRSQYG---QELLSHTPMVVEFLMQQSDKRFDGGVPVQ 208 (969)
Q Consensus 146 ~~~lL~~L~~l~EE~~--------------~~~~~~~~l~~~~r~~~~---~~l~~~~~~v~~~l~~~l~~~~~~~~~~~ 208 (969)
....+.+|..|.-.-. ..+.....-....-..+. +.+.... ++..|.+.+.+ +
T Consensus 438 ~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG--aVp~LV~LL~s--------~ 507 (810)
T 3now_A 438 LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG--ITTALCALAKT--------E 507 (810)
T ss_dssp HHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT--HHHHHHHHHTC--------C
T ss_pred HHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc--CHHHHHHHHcC--------C
Q ss_pred hhhhHHHHHHHHHHHHHccccccccchhhcccchHHHHHhhcCCC--CcHHHHHHHHHHHH
Q 002084 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELV 267 (969)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~i~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei~ 267 (969)
++.++..+..++.+-.... . ....+...+.++.++..|.++ .....|+.++..+.
T Consensus 508 s~~vqe~Aa~aL~NLA~d~---~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~ 564 (810)
T 3now_A 508 SHNSQELIARVLNAVCGLK---E-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564 (810)
T ss_dssp CHHHHHHHHHHHHHHHTSH---H-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCH---H-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHh
Done!