BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002086
(969 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKT 147
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 200
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNA-DGKYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ GK+I+S S
Sbjct: 201 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 749 EDSQVYVWKRE 759
ED+ VY+W +
Sbjct: 260 EDNMVYIWNLQ 270
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 275 VQKLQGHTDVVISTACH 291
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR----GFRNTSSQISAAFNADG 741
T+ ++ +FSP N + +SAD I+I D KF G + S + A+++D
Sbjct: 26 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDV--AWSSDS 80
Query: 742 KYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 81 NLLVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 112
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKT 147
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 200
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNA-DGKYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ GK+I+S S
Sbjct: 201 VKFSP-NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 749 EDSQVYVWKRE 759
ED+ VY+W +
Sbjct: 260 EDNMVYIWNLQ 270
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D ++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 275 VQKLQGHTDVVISTACH 291
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR----GFRNTSSQISAAFNADG 741
T+ ++ +FSP N + +SAD I+I D KF G + S + A+++D
Sbjct: 26 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDV--AWSSDS 80
Query: 742 KYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 81 NLLVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 112
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKT 168
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 169 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 221
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNA-DGKYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ GK+I+S S
Sbjct: 222 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 749 EDSQVYVWKRE 759
ED+ VY+W +
Sbjct: 281 EDNLVYIWNLQ 291
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 295
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 296 VQKLQGHTDVVISTACH 312
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 47 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 103
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 104 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 133
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKT 166
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 167 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 219
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNA-DGKYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ GK+I+S S
Sbjct: 220 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 749 EDSQVYVWKRE 759
ED+ VY+W +
Sbjct: 279 EDNLVYIWNLQ 289
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 293
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 294 VQKLQGHTDVVISTACH 310
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 45 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 101
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 102 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 131
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKT 161
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 162 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 214
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNA-DGKYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ GK+I+S S
Sbjct: 215 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 749 EDSQVYVWKRE 759
ED+ VY+W +
Sbjct: 274 EDNLVYIWNLQ 284
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 288
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 289 VQKLQGHTDVVISTACH 305
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR----GFRNTSSQISAAFNADG 741
T+ ++ +FSP N + +SAD I+I D KF G + S + A+++D
Sbjct: 40 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDV--AWSSDS 94
Query: 742 KYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 95 NLLVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 126
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 83.2 bits (204), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 200
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 201 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 260 EDNLVYIW 267
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 275 VQKLQGHTDVVISTACH 291
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 26 TKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 82
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 83 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 112
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 83.2 bits (204), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 200
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 201 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 260 EDNLVYIW 267
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 275 VQKLQGHTDVVISTACH 291
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 26 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 82
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 83 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 112
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 83.2 bits (204), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 200
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 201 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 260 EDNLVYIW 267
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 275 VQKLQGHTDVVISTACH 291
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 26 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 82
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 83 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 112
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 82.8 bits (203), Expect = 9e-16, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 140
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 141 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 193
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 194 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 252
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 253 EDNLVYIW 260
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 267
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 268 VQKLQGHTDVVISTACH 284
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 19 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 75
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 76 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 105
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 82.8 bits (203), Expect = 9e-16, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 143
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 144 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 196
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 197 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 256 EDNLVYIW 263
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 270
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 271 VQKLQGHTDVVISTACH 287
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 22 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 78
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 79 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 108
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 82.8 bits (203), Expect = 9e-16, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 91 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 149
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 150 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 202
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 203 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 262 EDNLVYIW 269
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 276
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 277 VQKLQGHTDVVISTACH 293
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 28 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 84
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 85 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 114
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 82.8 bits (203), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 150
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 203
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 204 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 263 EDNLVYIW 270
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 278 VQKLQGHTDVVISTACH 294
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 29 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 85
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 86 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 115
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 144
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 197
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 198 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 257 EDNLVYIW 264
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 272 VQKLQGHTDVVISTACH 288
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 23 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 79
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 80 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 109
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 150
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 203
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 204 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 263 EDNLVYIW 270
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 278 VQKLQGHTDVVISTACH 294
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 29 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 85
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 86 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 115
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 144
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 197
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 198 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 257 EDNLVYIW 264
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 272 VQKLQGHTDVVISTACH 288
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 23 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 79
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 80 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 109
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 150
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 203
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 204 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 263 EDNLVYIW 270
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 278 VQKLQGHTDVVISTACH 294
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 29 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 85
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 86 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 115
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+++WD+ + CLK L H++YV C FNP + +SGS D VRIW + +
Sbjct: 87 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 145
Query: 633 TDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H + V+A + DG + S+ G CR++ + +T ++
Sbjct: 146 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-------LKTLIDDDNPPVSF 198
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADG-KYIISAS 748
+FSP N +L + D+ +++ D + + G +N I A F+ G K+I+S S
Sbjct: 199 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 749 EDSQVYVW 756
ED+ VY+W
Sbjct: 258 EDNLVYIW 265
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 573 MDKTVRLWDMETKSCLKLF-AHNDYVTCI--QFNPMDDDYFISGSLDAKVRIWSISDRLV 629
+D T++LWD CLK + H + CI F+ + +SGS D V IW++ + +
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 272
Query: 630 VDWTDLHE--MVTAACY 644
V H +++ AC+
Sbjct: 273 VQKLQGHTDVVISTACH 289
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
T+ ++ +FSP N + +SAD I+I D G + S + A+++D
Sbjct: 24 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNL 80
Query: 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++SAS+D + +W + S+GK + T + H ++
Sbjct: 81 LVSASDDKTLKIW------DVSSGK-CLKTLKGHSNY 110
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 19/222 (8%)
Query: 550 FIGHLDDVXXXXXX-XXXXXXXXXMDKTVRLWDM--ETKSCLKLFAHNDYVTCIQFNP-M 605
F+GH DV D +R+W++ E L AH D+V+C++F+P +
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSL 164
Query: 606 DDDYFISGSLDAKVRIWSIS-DRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664
D +SG D V++W ++ RLV D VT+ +PDG G RL+
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 665 IEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR 724
+ +K L+++ ++ I FSP+ T RI L+ DI+ +
Sbjct: 225 L--TKGEALSEM-------AAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELA 275
Query: 725 GFRNTSSQI-----SAAFNADGKYIISASEDSQVYVWKREEH 761
S +I S A++ADG + S D+ + VW E+
Sbjct: 276 PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMS-MSEGNLTP 495
DL+ L +++ H + ++ S D AS+ +D V +W++ + E +S M+ G P
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG--AP 239
Query: 496 IH 497
I+
Sbjct: 240 IN 241
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 444 CQ-EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEG 491
CQ + H + ++ FS D R + S G D + VW V+ + ++S G
Sbjct: 101 CQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG 149
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633
DKTV+LW+ + L H+ V + F+P DD S S D V++W+ + +L+ T
Sbjct: 406 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLLQTLT 464
Query: 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693
V ++PDGQ S + +L++ L L T SS R G
Sbjct: 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVR---GVA 515
Query: 694 FSPSNPSEVLVTSADSRIRILD-GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752
FSP + + S D +++ + ++ G ++SS AF+ DG+ I SAS D
Sbjct: 516 FSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASSDKT 572
Query: 753 VYVW 756
V +W
Sbjct: 573 VKLW 576
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 124/320 (38%), Gaps = 36/320 (11%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLC 501
L Q + H S+ + FS D + +ASA +D+ + +W + +++ G H S
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG-----HSSSV 265
Query: 502 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYVHVPETVFSLSEKPFCSFIGHLDDVXXXX 561
N +++ + + + GH V
Sbjct: 266 NGVAFRPDGQTIASASDDKTVK---------------LWNRNGQLLQTLTGHSSSVWGVA 310
Query: 562 XXXXXXXXXXXMD-KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVR 620
D KTV+LW+ + L H+ V + F+P D S S D V+
Sbjct: 311 FSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVK 369
Query: 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680
+W+ + +L+ T V ++PDGQ S + +L++ L L T
Sbjct: 370 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------T 423
Query: 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD-GLDIVHKFRGFRNTSSQISAAFNA 739
SS + G FSP + + + S D +++ + ++ G ++SS AF+
Sbjct: 424 GHSSS---VWGVAFSPDDQT-IASASDDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSP 477
Query: 740 DGKYIISASEDSQVYVWKRE 759
DG+ I SAS+D V +W R
Sbjct: 478 DGQTIASASDDKTVKLWNRN 497
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633
DKTV+LW+ + L H+ V + F+P D S S D V++W+ + +L+ T
Sbjct: 37 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLT 95
Query: 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693
V ++PDGQ S + +L++ L L T SS + G
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSS---VWGVA 146
Query: 694 FSPSNPSEVLVTSADSRIRILD-GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752
FSP + + S D +++ + ++ G ++SS AF+ DG+ I SAS+D
Sbjct: 147 FSPDGQT-IASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASDDKT 203
Query: 753 VYVWKRE 759
V +W R
Sbjct: 204 VKLWNRN 210
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633
DKTV+LW+ + L H+ V + F+P D S S D V++W+ + +L+ T
Sbjct: 201 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLT 259
Query: 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693
V + PDGQ S + +L++ L L T SS + G
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSS---VWGVA 310
Query: 694 FSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQV 753
FSP + + +++D + L + H ++SS AF+ DG+ I SAS+D V
Sbjct: 311 FSPDG--QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 754 YVWKRE 759
+W R
Sbjct: 369 KLWNRN 374
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633
DKTV+LW+ + L H+ V + F+P D S S D V++W+ + +L+ T
Sbjct: 160 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLT 218
Query: 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693
V ++PDGQ S + +L++ L L T SS + G
Sbjct: 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSS---VNGVA 269
Query: 694 FSPSNPSEVLVTSADSRIRILD-GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752
F P + + S D +++ + ++ G ++SS AF+ DG+ I SAS+D
Sbjct: 270 FRPDGQT-IASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASDDKT 326
Query: 753 VYVWKRE-EHRNASTG 767
V +W R +H TG
Sbjct: 327 VKLWNRNGQHLQTLTG 342
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633
DKTV+LW+ + L H+ V + F+P D S S D V++W+ + +L+ T
Sbjct: 78 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693
V ++PDGQ S + +L++ L L T SS + G
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSS---VWGVA 187
Query: 694 FSPSNPSEVLVTSADSRIRILD-GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752
FSP + + S D +++ + ++ G ++SS AF+ DG+ I SAS+D
Sbjct: 188 FSPDGQT-IASASDDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKT 244
Query: 753 VYVWKRE 759
V +W R
Sbjct: 245 VKLWNRN 251
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633
DKTV+LW+ + L H+ V + F+P D S S D V++W+ + +L+ T
Sbjct: 365 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693
V ++PD Q S + +L++ L L T SS R G
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVR---GVA 474
Query: 694 FSPSNPSEVLVTSADSRIRILD-GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752
FSP + + S D +++ + ++ G ++SS AF+ DG+ I SAS+D
Sbjct: 475 FSPDGQT-IASASDDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKT 531
Query: 753 VYVWKRE 759
V +W R
Sbjct: 532 VKLWNRN 538
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 582 METKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTA 641
M K +L AH+ V + F+P D S S D V++W+ + +L+ T V
Sbjct: 4 MGVKERNRLEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 62
Query: 642 ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701
++PDGQ S + +L++ L L T SS R G FSP +
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTL------TGHSSSVR---GVAFSPDGQT- 112
Query: 702 VLVTSADSRIRILD-GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759
+ S D +++ + ++ G ++SS AF+ DG+ I SAS+D V +W R
Sbjct: 113 IASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
L Q + H S+W + FS D + +ASA +D+ + +W
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
L Q + H S+W + FS D + +ASA +D+ + +W
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
L Q + H S+W + FS D + +ASA +D+ + +W
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
L Q + H S+W + FS D + +ASA D+ + +W
Sbjct: 540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
L Q + H S+ + FS D + +ASA +D+ + +W
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
L Q + H S+ + FS D + +ASA +D+ + +W
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
++AH S+ + FS D + +ASA +D+ + +W
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 16/202 (7%)
Query: 574 DKTVRLWDMETKSCLKLFA------HNDYVTCIQFNPMDDDYFISGSLDAKVRIWS--IS 625
D+T LWD+ T + +F H V + N ++ + FISGS D VR+W I+
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 626 DRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685
R V + + + + PDGQ GS G+CRL+ + HQL + + + +
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--HQLQVYNREPDRNDN 296
Query: 686 TRKI-TGFQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNT-SSQISA-AFNAD 740
I T FS S + ++ + D L ++V +N+ +IS ++D
Sbjct: 297 ELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355
Query: 741 GKYIISASEDSQVYVWKREEHR 762
G + + S D + +W HR
Sbjct: 356 GSALCTGSWDKNLKIWAFSGHR 377
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633
D+TVR+WD+ T C + D VT + +P D Y +GSLD VR+W +V+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 634 DLH--------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668
D + V + +T DGQ+ + GS S +L++++++
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 28/186 (15%)
Query: 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM-VTAACYTPDGQNALIG 654
Y+ + F+P D + +G+ D +RIW I +R +V HE + + Y P G + G
Sbjct: 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI----TGFQFSPSNPSEVLVTSADSR 710
S + R++ D +T + S T I T SP + + S D
Sbjct: 184 SGDRTVRIW-------------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 230
Query: 711 IRILD---GLDIVHKF-----RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762
+R+ D G +V + G + S S F DG+ ++S S D V +W +
Sbjct: 231 VRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Query: 763 NASTGK 768
N S K
Sbjct: 290 NKSDSK 295
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIH 497
I ++ FS D +FLA+ EDR+I +W+++ +++ + +G+ I+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 550 FIGHLDDVXXXX-XXXXXXXXXXXMDKTVRLWDM--ETKSCLKLFAHNDYVTCIQFNPMD 606
F+GH DV DKT++LW+ K ++ +H+++V+C++F+P
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 607 DD-YFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664
+ +S D V++W++++ +L + + +PDG G G L+
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 665 IEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF 723
+ + K L+ L+ D I FSP+ T +I L+G IV +
Sbjct: 221 LNEGKHLYTLDGGDI----------INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 270
Query: 724 RG-FRNTSSQ------ISAAFNADGKYIISASEDSQVYVWK 757
+ +TSS+ S A++ADG+ + + D+ V VW+
Sbjct: 271 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 574 DKTVRLWDM---ETKSCL---KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD- 626
DKT+ +W + ET + L H+ +V+ + + D + +SGS D +R+W ++
Sbjct: 37 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTG 95
Query: 627 ----RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682
R V D V + ++ D + + GS + +L+ + L + +
Sbjct: 96 TTTRRFVGHTKD----VLSVAFSSDNRQIVSGSRDKTIKLW-------NTLGVCKYTVQD 144
Query: 683 KSSTRKITGFQFSPSNPSEVLVTSA-DSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741
+S + ++ +FSP++ + ++V+ D +++ + + K +T + + DG
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 742 KYIISASEDSQVYVWKREEHRNAST 766
S +D Q +W E ++ T
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYT 229
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 550 FIGHLDDVXXXX-XXXXXXXXXXXMDKTVRLWDM--ETKSCLKLFAHNDYVTCIQFNPMD 606
F+GH DV DKT++LW+ K ++ +H+++V+C++F+P
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 607 DD-YFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664
+ +S D V++W++++ +L + + +PDG G G L+
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 665 IEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF 723
+ + K L+ L+ D I FSP+ T +I L+G IV +
Sbjct: 244 LNEGKHLYTLDGGDI----------INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 293
Query: 724 RG-FRNTSSQ------ISAAFNADGKYIISASEDSQVYVWK 757
+ +TSS+ S A++ADG+ + + D+ V VW+
Sbjct: 294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 574 DKTVRLWDM---ETKSCL---KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD- 626
DKT+ +W + ET + L H+ +V+ + + D + +SGS D +R+W ++
Sbjct: 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTG 118
Query: 627 ----RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682
R V D V + ++ D + + GS + +L+ + L + +
Sbjct: 119 TTTRRFVGHTKD----VLSVAFSSDNRQIVSGSRDKTIKLW-------NTLGVCKYTVQD 167
Query: 683 KSSTRKITGFQFSPSNPSEVLVTSA-DSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741
+S + ++ +FSP++ + ++V+ D +++ + + K +T + + DG
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 742 KYIISASEDSQVYVWKREEHRNAST 766
S +D Q +W E ++ T
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYT 252
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 574 DKTVRLWDMET-KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW-SISDRLVVD 631
DKT++++ ET + L++ AH D V C F+ DD + + S+D KV+IW S++ LV
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFST-DDRFIATCSVDKKVKIWNSMTGELVHT 700
Query: 632 WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
+ + E V +T + L+ + C L KL LNQ + + T +
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSDCFL------KLWDLNQKECRNTMFGHTNSVNH 754
Query: 692 FQFSPSNPSEVLVTSADSRIRILDG 716
+FSP + + SAD +++ D
Sbjct: 755 CRFSPDDKL-LASCSADGTLKLWDA 778
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 41/207 (19%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW---SISDRLV 629
D ++LWD+ K C +F H + V +F+P DD S S D +++W S ++R
Sbjct: 728 DCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWDATSANERKS 786
Query: 630 VD-----------WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678
++ D+ +V ++ DG ++ + K L+ I S L L ++
Sbjct: 787 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA-KNKIFLFDIHTSGL--LGEI-- 841
Query: 679 QTKKKSSTRKITGFQFSPSNPSEVLVTS--------ADSRIRILDGLDIVHKFRGFRNTS 730
T S+ I FSP N V+ S DSR ++ D RG + S
Sbjct: 842 HTGHHST---IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADC-------RG--HLS 889
Query: 731 SQISAAFNADGKYIISASEDSQVYVWK 757
F+ DG +++S+D + +W+
Sbjct: 890 WVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 574 DKTVRLWDMETKSCL-KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVD 631
DKT ++W + L +L HN V C F+ +D +G + ++RIW++S+ L+
Sbjct: 1112 DKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIRIWNVSNGELLHL 1170
Query: 632 WTDLHE--------MVTAACYTPDGQ 649
L E VT C++PDG+
Sbjct: 1171 CAPLSEEGAATHGGWVTDLCFSPDGK 1196
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVW 478
EI+AHE + FS D RF+A+ D+ + +W
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489
S+ L LH E++ H G + FS+D+ LA+ ++ I +W V E++ +
Sbjct: 1119 SFDLLLPLH---ELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLC 1171
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ 481
H+ ++W I+F+ D + L S+ +D I VW Q
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQ 1039
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624
D +++W+ + C+ L H + V F + + +S S D V++W+I
Sbjct: 1030 DAEIQVWNWQLDKCIFLRGHQETVK--DFRLLKNSRLLSWSFDGTVKVWNI 1078
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 550 FIGHLDDVXXXXXXXXXXXXXX-XMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNP---M 605
F+GH DV DKT+++W ++ + L HND+V+ ++ P
Sbjct: 103 FVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 606 DDD--YFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662
DDD IS D V+ W+++ ++ D+ + + +PDG G L
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL----D 718
+++ K S+ ++ FSP+ T+ ++ LD D
Sbjct: 223 WNLAAKK---------AXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 719 IVHKFRGFRNTSS--QISAAFNADGKYIISASEDSQVYVWK 757
+ +F G+ + +S A++ADG+ + + D+ + VW+
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 77/196 (39%), Gaps = 30/196 (15%)
Query: 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMD-DDYFISGSLDAKVRIWSISDRLVVD 631
D T LWD+E+ L+ F H V C+ P + + F+SG D K +W + V
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 632 WTDLHEM-VTAACYTPDGQNALIGSHKGSCRLYSI----------EDSKLHQLNQVDFQT 680
+ HE V + Y P G GS +CRLY + ++S + + VDF
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL 294
Query: 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD 740
S G+ N +VL SR+ IL G N S + + D
Sbjct: 295 ---SGRLLFAGYNDYTINVWDVL---KGSRVSIL---------FGHENRVSTLRVS--PD 337
Query: 741 GKYIISASEDSQVYVW 756
G S S D + VW
Sbjct: 338 GTAFCSGSWDHTLRVW 353
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623
D T+ +WD+ S + LF H + V+ ++ +P D F SGS D +R+W+
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 24/222 (10%)
Query: 550 FIGHLDDVXXXXX-XXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNP---M 605
F+GH DV DKT+++W ++ + L HND+V+ ++ P
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 606 DDD--YFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662
DDD IS D V+ W+++ ++ D+ + + +PDG G L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 663 YSIEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721
+++ K ++ L+ D ++ FSP+ T+ ++ LD +V
Sbjct: 223 WNLAAKKAMYTLSAQD----------EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 272
Query: 722 ----KFRGFRNTSS--QISAAFNADGKYIISASEDSQVYVWK 757
+F G+ + +S A++ADG+ + + D+ + VW+
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 24/222 (10%)
Query: 550 FIGHLDDVXXXXX-XXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNP---M 605
F+GH DV DKT+++W ++ + L HND+V+ ++ P
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 606 DDD--YFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662
DDD IS D V+ W+++ ++ D+ + + +PDG G L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 663 YSIEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721
+++ K ++ L+ D ++ FSP+ T+ ++ LD +V
Sbjct: 223 WNLAAKKAMYTLSAQD----------EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 272
Query: 722 ----KFRGFRNTSS--QISAAFNADGKYIISASEDSQVYVWK 757
+F G+ + +S A++ADG+ + + D+ + VW+
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 24/222 (10%)
Query: 550 FIGHLDDVXXXXX-XXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNP---M 605
F+GH DV DKT+++W ++ + L HND+V+ ++ P
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 606 DDD--YFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662
DDD IS D V+ W+++ ++ D+ + + +PDG G L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 663 YSIEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721
+++ K ++ L+ D ++ FSP+ T+ ++ LD +V
Sbjct: 223 WNLAAKKAMYTLSAQD----------EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 272
Query: 722 ----KFRGFRNTSS--QISAAFNADGKYIISASEDSQVYVWK 757
+F G+ + +S A++ADG+ + + D+ + VW+
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 24/222 (10%)
Query: 550 FIGHLDDVXXXXX-XXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNP---M 605
F+GH DV DKT+++W ++ + L HND+V+ ++ P
Sbjct: 97 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 606 DDD--YFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662
DDD IS D V+ W+++ ++ D+ + + +PDG G L
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 663 YSIEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721
+++ K ++ L+ D ++ FSP+ T+ ++ LD +V
Sbjct: 217 WNLAAKKAMYTLSAQD----------EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 266
Query: 722 ----KFRGFRNTSS--QISAAFNADGKYIISASEDSQVYVWK 757
+F G+ + +S A++ADG+ + + D+ + VW+
Sbjct: 267 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 24/222 (10%)
Query: 550 FIGHLDDVXXXXX-XXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNP---M 605
F+GH DV DKT+++W ++ + L HND+V+ ++ P
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 606 DDD--YFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662
DDD IS D V+ W+++ ++ D+ + + +PDG G L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 663 YSIEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721
+++ K ++ L+ D ++ FSP+ T+ ++ LD +V
Sbjct: 223 WNLAAKKAMYTLSAQD----------EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 272
Query: 722 ----KFRGFRNTSS--QISAAFNADGKYIISASEDSQVYVWK 757
+F G+ + +S A++ADG+ + + D+ + VW+
Sbjct: 273 DLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 574 DKTVRLWDMET-KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW-SISDRLVVD 631
DKT++++ ET + L + AH D V C F+ DD Y + S D KV+IW S + +LV
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHT 701
Query: 632 WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
+ + E V +T + L+ + GS + KL LNQ + + T +
Sbjct: 702 YDEHSEQVNCCHFTNKSNHLLLAT--GSNDFF----LKLWDLNQKECRNTMFGHTNSVNH 755
Query: 692 FQFSPSNPSEVLVT-SADSRIRILD 715
+FSP + E+L + SAD +R+ D
Sbjct: 756 CRFSPDD--ELLASCSADGTLRLWD 778
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 41/207 (19%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI---SDRLV 629
D ++LWD+ K C +F H + V +F+P DD+ S S D +R+W + ++R
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKS 787
Query: 630 VDWT-----------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678
++ D+ +V ++ DG ++ + K L+ I S L +
Sbjct: 788 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL----LAEI 842
Query: 679 QTKKKSSTRKITGFQFSPSNPSEVLVTS--------ADSRIRILDGLDIVHKFRGFRNTS 730
T S+ I FSP + V+ S DSR+++ D RG + S
Sbjct: 843 HTGHHST---IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-------RG--HLS 890
Query: 731 SQISAAFNADGKYIISASEDSQVYVWK 757
F+ DG ++AS+D + VW+
Sbjct: 891 WVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 574 DKTVRLWDMETKSCL-KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-- 630
DKT ++W + S L +L HN V C F+ +D +G + ++RIW++SD ++
Sbjct: 1113 DKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHS 1171
Query: 631 -------DWTDLH-EMVTAACYTPDGQ 649
+ T H VT C++PD +
Sbjct: 1172 CAPISVEEGTATHGGWVTDVCFSPDSK 1198
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE------CEVMS 487
S+ LS LH E++ H G + FSLD LA+ ++ I +W V + C +S
Sbjct: 1120 SFDLLSPLH---ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1176
Query: 488 MSEGNLT 494
+ EG T
Sbjct: 1177 VEEGTAT 1183
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 32/211 (15%)
Query: 577 VRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDWT 633
V L+D+ T L H+ + F+P D I+ S V +W+I RL V D
Sbjct: 828 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCR 886
Query: 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYS----IEDSKLHQLNQVD--FQTKKKS--S 685
V ++PDG + L S + R++ ++S + ++D FQ + +
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 686 TRKITGFQFSPSNPSE--------------------VLVTSADSRIRILDGLDIVHKFRG 725
I G Q + V D I+I++ + G
Sbjct: 947 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 1006
Query: 726 FRNTSSQISAAFNADGKYIISASEDSQVYVW 756
+ + F ADGK +IS+SEDS + VW
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ 481
H+ ++ I+F+ D + L S+ ED VI VW Q
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1040
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
+I+AHE + FS D ++A+ D+ + +W+
Sbjct: 659 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 574 DKTVRLWDMET-KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW-SISDRLVVD 631
DKT++++ ET + L + AH D V C F+ DD Y + S D KV+IW S + +LV
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHT 694
Query: 632 WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
+ + E V +T + L+ + GS + KL LNQ + + T +
Sbjct: 695 YDEHSEQVNCCHFTNKSNHLLLAT--GSNDFF----LKLWDLNQKECRNTMFGHTNSVNH 748
Query: 692 FQFSPSNPSEVLVT-SADSRIRILD 715
+FSP + E+L + SAD +R+ D
Sbjct: 749 CRFSPDD--ELLASCSADGTLRLWD 771
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 41/207 (19%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI---SDRLV 629
D ++LWD+ K C +F H + V +F+P DD+ S S D +R+W + ++R
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKS 780
Query: 630 VDWT-----------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678
++ D+ +V ++ DG ++ + K L+ I S L +
Sbjct: 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL----LAEI 835
Query: 679 QTKKKSSTRKITGFQFSPSNPSEVLVTS--------ADSRIRILDGLDIVHKFRGFRNTS 730
T S+ I FSP + V+ S DSR+++ D RG + S
Sbjct: 836 HTGHHST---IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-------RG--HLS 883
Query: 731 SQISAAFNADGKYIISASEDSQVYVWK 757
F+ DG ++AS+D + VW+
Sbjct: 884 WVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 574 DKTVRLWDMETKSCL-KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-- 630
DKT ++W + S L +L HN V C F+ +D +G + ++RIW++SD ++
Sbjct: 1106 DKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHS 1164
Query: 631 -------DWTDLH-EMVTAACYTPDGQ 649
+ T H VT C++PD +
Sbjct: 1165 CAPISVEEGTATHGGWVTDVCFSPDSK 1191
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE------CEVMS 487
S+ LS LH E++ H G + FSLD LA+ ++ I +W V + C +S
Sbjct: 1113 SFDLLSPLH---ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1169
Query: 488 MSEGNLT 494
+ EG T
Sbjct: 1170 VEEGTAT 1176
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 32/211 (15%)
Query: 577 VRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDWT 633
V L+D+ T L H+ + F+P D I+ S V +W+I RL V D
Sbjct: 821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCR 879
Query: 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYS----IEDSKLHQLNQVD--FQTKKKS--S 685
V ++PDG + L S + R++ ++S + ++D FQ + +
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 686 TRKITGFQFSPSNPSE--------------------VLVTSADSRIRILDGLDIVHKFRG 725
I G Q + V D I+I++ + G
Sbjct: 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999
Query: 726 FRNTSSQISAAFNADGKYIISASEDSQVYVW 756
+ + F ADGK +IS+SEDS + VW
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ 481
H+ ++ I+F+ D + L S+ ED VI VW Q
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624
D T+RLWD+E +CL++ H + V CI+F D+ +SG+ D K+++W +
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDL 363
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625
D T+++WD T C ++ H V C+Q+ D+ I+GS D+ VR+W ++
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVN 201
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 15/184 (8%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D TVR+WD+ T L L H + V ++FN + ++ S D + +W ++ +
Sbjct: 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692
+ AA D + I S G K+ + +F R I
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLNGHKRGIACL 302
Query: 693 QFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752
Q+ V+ S+D+ IR+ D ++ R ++ D K I+S + D +
Sbjct: 303 QY---RDRLVVSGSSDNTIRLWD-IECGACLRVLEG-HEELVRCIRFDNKRIVSGAYDGK 357
Query: 753 VYVW 756
+ VW
Sbjct: 358 IKVW 361
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 24/165 (14%)
Query: 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAA--CYTPDGQNALIG 654
V C+Q+ DD +SG D ++IW D+ ++ + T + C D + + G
Sbjct: 136 VYCLQY---DDQKIVSGLRDNTIKIW---DKNTLECKRILTGHTGSVLCLQYDERVIITG 189
Query: 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714
S + R++ + ++ LN + + R G + S + V S I
Sbjct: 190 SSDSTVRVWDVNTGEM--LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 247
Query: 715 DGLDIVHKFRGFRNTSSQISAAFNA---DGKYIISASEDSQVYVW 756
R AA N D KYI+SAS D + VW
Sbjct: 248 -----------LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGN 492
+ H ++ + F D +++ SA DR I VW CE + G+
Sbjct: 252 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D T+R+WD+ET CL L H V C+Q+ D +SG+ D V++W
Sbjct: 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETE----- 269
Query: 633 TDLHEMV--TAACYTP--DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688
T LH + T Y+ DG + + GS S R++ +E N + T +S T
Sbjct: 270 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG-----NCIHTLTGHQSLT-- 322
Query: 689 ITGFQFSPSNPSEVLVT-SADSRIRILD--GLDIVHKFRGFRNTSSQISA-AFNADGKYI 744
+G + + +LV+ +ADS ++I D + +G S ++ FN + ++
Sbjct: 323 -SGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FV 375
Query: 745 ISASEDSQVYVW 756
I++S+D V +W
Sbjct: 376 ITSSDDGTVKLW 387
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 574 DKTVRLWDMETKSCL-KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D V++WD ET++CL L H + V +QF+ + + +SGSLD +R+W + +
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVETGNCIHT 314
Query: 633 TDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
H+ +T+ D N L+ G+ + +++ I+ + L + K +S+ +T
Sbjct: 315 LTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQC--LQTLQGPNKHQSA---VTC 367
Query: 692 FQFSPSNPSEVLVTSADSRIRILD 715
QF N + V+ +S D +++ D
Sbjct: 368 LQF---NKNFVITSSDDGTVKLWD 388
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 24/190 (12%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D T+++W T CL+ L H V Q M D+ ISGS D +++W+ +
Sbjct: 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQ---MRDNIIISGSTDRTLKVWNAETGECIH- 193
Query: 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK-LHQLNQVDFQTKKKSSTRKITG 691
T T C + + GS + R++ IE + LH L +
Sbjct: 194 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL------------MGHVAA 241
Query: 692 FQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749
+ + V+ + D +++ D +H +G N + DG +++S S
Sbjct: 242 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR----VYSLQFDGIHVVSGSL 297
Query: 750 DSQVYVWKRE 759
D+ + VW E
Sbjct: 298 DTSIRVWDVE 307
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 573 MDKTVRLWDMETKSCL-KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624
+D ++R+WD+ET +C+ L H + ++ + D+ +SG+ D+ V+IW I
Sbjct: 297 LDTSIRVWDVETGNCIHTLTGHQSLTSGME---LKDNILVSGNADSTVKIWDI 346
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 27/223 (12%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD- 631
D T++LWD + C++ + H+ V+ + P + D+ +S S D +++W + V
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKT 229
Query: 632 WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL--------HQLNQVDFQTKKK 683
+T E V DG S+ + R++ + + H + + + +
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289
Query: 684 -SSTRKITGFQFSPSN-PSEVLVT-SADSRIRILD---GLDIVHKFRGFRNTSSQISAAF 737
SS + TG + S P L++ S D I++ D G+ ++ G N + F
Sbjct: 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM-TLVGHDNWVRGV--LF 346
Query: 738 NADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780
++ GK+I+S ++D + VW +++N KR + T HEHF
Sbjct: 347 HSGGKFILSCADDKTLRVW---DYKN----KRCMKTLNAHEHF 382
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622
DKT+R+WD + K C+K L AH +VT + F+ Y ++GS+D V++W
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 407
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 574 DKTVRLWDMETKSCLK--LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625
D TV+LW+ E L+ H +V C+ FNP D F SG LD V++WS+
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625
D T+++WD +TKSC+ L H V+ F+P ISGS D ++IW+ S
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSS 258
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 574 DKTVRLWDMETKSCLK--LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624
D TV+LW+ E L+ H +V C+ FNP D F SG LD V++WS+
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625
D T+++WD +TKSC+ L H V+ F+P ISGS D ++IW+ S
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSS 258
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 574 DKTVRLWDMETKSCLK--LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624
D TV+LW+ E L+ H +V C+ FNP D F SG LD V++WS+
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625
D T+++WD +TKSC+ L H V+ F+P ISGS D ++IW+ S
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSS 258
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 574 DKTVRLWDMETKSCLK--LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625
D TV+LW+ E L+ H +V C+ FNP D F SG LD V++WS+
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 574 DKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625
D T+++WD +TKSC+ L H V+ F+P ISGS D ++IW+ S
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSS 258
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 577 VRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW---SISDRLVVDWT 633
V L +M+ K L H VT + NP D + + S+D V+IW + + ++
Sbjct: 233 VILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 634 DLHEM-VTAACYTPDGQNALIGSHKGSCRLYS 664
H V AAC++PDG L K R+YS
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 577 VRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW---SISDRLVVDWT 633
V L +M+ K L H VT + NP D + + S+D V+IW + + ++
Sbjct: 234 VILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 293
Query: 634 DLHEM-VTAACYTPDGQNALIGSHKGSCRLYS 664
H V AAC++PDG L K R+YS
Sbjct: 294 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 325
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D T LWD+ET F H V + P D F+SG+ DA ++W + + +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 633 TDLHEM-VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
HE + A C+ P+G GS +CRL+ + + +Q + IT
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDL------RADQELMTYSHDNIICGITS 275
Query: 692 FQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNTSSQISAAFNADGKYIISASE 749
FS S +L D + D L D G N S + DG + + S
Sbjct: 276 VSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATGSW 332
Query: 750 DSQVYVWK 757
DS + +W
Sbjct: 333 DSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D T LWD+ET F H V + P D F+SG+ DA ++W + + +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 633 TDLHEM-VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
HE + A C+ P+G GS +CRL+ + + +Q + IT
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDL------RADQELMTYSHDNIICGITS 275
Query: 692 FQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNTSSQISAAFNADGKYIISASE 749
FS S +L D + D L D G N S + DG + + S
Sbjct: 276 VSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATGSW 332
Query: 750 DSQVYVWK 757
DS + +W
Sbjct: 333 DSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D T LWD+ET F H V + P D F+SG+ DA ++W + + +
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT 232
Query: 633 TDLHEM-VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
HE + A C+ P+G GS +CRL+ + + +Q + IT
Sbjct: 233 FTGHESDINAICFFPNGNAFATGSDDATCRLFDL------RADQELMTYSHDNIICGITS 286
Query: 692 FQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNTSSQISAAFNADGKYIISASE 749
FS S +L D + D L D G N S + DG + + S
Sbjct: 287 VSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATGSW 343
Query: 750 DSQVYVWK 757
DS + +W
Sbjct: 344 DSFLKIWN 351
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 577 VRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW---SISDRLVVDWT 633
V L +M+ K L H VT + NP D + + S+D V+IW + + ++
Sbjct: 233 VILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 634 DLHEM-VTAACYTPDGQNALIGSHKGSCRLYS 664
H V AAC++PDG L K R+YS
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D T LWD+ET F H V + P D F+SG+ DA ++W + + +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 633 TDLHEM-VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
HE + A C+ P+G GS +CRL+ + + +Q + IT
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDL------RADQELMTYSHDNIICGITS 275
Query: 692 FQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNTSSQISAAFNADGKYIISASE 749
FS S +L D + D L D G N S + DG + + S
Sbjct: 276 VSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATGSW 332
Query: 750 DSQVYVWK 757
DS + +W
Sbjct: 333 DSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 14/188 (7%)
Query: 574 DKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D T LWD+ET F H V + P D F+SG+ DA ++W + + +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 633 TDLHEM-VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691
HE + A C+ P+G GS +CRL+ + + +Q + IT
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDL------RADQELMTYSHDNIICGITS 275
Query: 692 FQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNTSSQISAAFNADGKYIISASE 749
FS S +L D + D L D G N S + DG + + S
Sbjct: 276 VSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATGSW 332
Query: 750 DSQVYVWK 757
DS + +W
Sbjct: 333 DSFLKIWN 340
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD---RLV 629
D +V++WD+ K+ LK + AH+ V C+ P D F+S D ++ +W
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219
Query: 630 VDWTDLHEMVTAACYTPDGQNAL-IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688
+D+ + T+ + P+ + G G+ L +I++ Q + V Q
Sbjct: 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ--------N 271
Query: 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR 724
ITG +S + + S D + +LD D FR
Sbjct: 272 ITGLAYSYHSSPFLASISEDCTVAVLDA-DFSEVFR 306
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKV 619
D TV + D + + +H D+VT + ++P+D F + D KV
Sbjct: 291 DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKV 336
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 13/185 (7%)
Query: 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D + +WD+ ++ ++ F H D +CI + D +G LD VR W + + +
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692
D + + Y P G+ +G + + + +QL+ ++ S G
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLSLKFAYCGK 278
Query: 693 QFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752
F + +L + R G I + +SS +S + D KYI++ S D +
Sbjct: 279 WFVSTGKDNLL-----NAWRTPYGASIFQS----KESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 753 VYVWK 757
V++
Sbjct: 330 ATVYE 334
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 43/185 (23%)
Query: 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKT+RLWD+ T + K F H V + F+P D+ +S + ++++W+I
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNI-------- 147
Query: 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692
G C+ S E N D+ + + S +
Sbjct: 148 ------------------------LGECKFSSAEKE-----NHSDWVSCVRYSPIMKSAN 178
Query: 693 QFSPSNPSEVLVTSADSRIRILD-GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS 751
+ P P V D R+++ + I + F+ + + +S + N GKYI + +D
Sbjct: 179 KVQPFAPYFASV-GWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPN--GKYIATGGKDK 235
Query: 752 QVYVW 756
++ +W
Sbjct: 236 KLLIW 240
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 550 FIGHLDDVXXXXXX-XXXXXXXXXMDKTVRLWDM--ETK-SCLKLFAHNDYVTCIQFNPM 605
F+GH +V ++ ++LW++ E K S + H+D+V+C++++P+
Sbjct: 114 FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI 173
Query: 606 DDD---------YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH 656
YF S D ++++W+ + ++ + V +P+G+ G
Sbjct: 174 MKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233
Query: 657 KGSCRLYSIEDSKLHQ--------LNQVDFQTK 681
++ I + Q +NQ+ F K
Sbjct: 234 DKKLLIWDILNLTYPQREFDAGSTINQIAFNPK 266
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEV-QECEVMSMSEGN 492
DL + H+ ++++ FS D R + SAG +R I +W + EC+ S + N
Sbjct: 104 DLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 541 SLSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLF-AHNDYVTC 599
S+++K GH V D+TVR+WD++ C +F HN V C
Sbjct: 149 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208
Query: 600 IQFNPMDD-DYFISGSLDAKVRIWSI 624
+ + Y ++GS D + +W +
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 66/331 (19%), Positives = 123/331 (37%), Gaps = 50/331 (15%)
Query: 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI-------HP 498
++ H+G +W +K++ L S DR + VW++++ + EG+ + + +
Sbjct: 157 QLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 499 SLCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXDY---VHVPETVFSLSEKPFCSFI--GH 553
++ DY H PE E P+ + GH
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE------ENPYFVGVLRGH 269
Query: 554 LDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFIS 612
V D T+ +WD+ CL + + H D + ++ + IS
Sbjct: 270 XASV-RTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDH-ERKRCIS 327
Query: 613 GSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY--SIEDSKL 670
S D +RIW + + YT G AL+G + S + + D +
Sbjct: 328 ASXDTTIRIWDLEN-------------GELXYTLQGHTALVGLLRLSDKFLVSAAADGSI 374
Query: 671 HQLNQVDFQTK---KKSSTRKITGFQFSPSNPSEVLVTSADSRIRI--LDGLDIVHKFRG 725
+ D+ K ++ IT F S + +LV+ ++++ I L +VH
Sbjct: 375 RGWDANDYSRKFSYHHTNLSAITTFYVSDN----ILVSGSENQFNIYNLRSGKLVHA--N 428
Query: 726 FRNTSSQISAAFNADGKYIISASE-DSQVYV 755
+ QI + N GK +++A E D Q ++
Sbjct: 429 ILKDADQIWSV-NFKGKTLVAAVEKDGQSFL 458
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 541 SLSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLF-AHNDYVTC 599
S+++K GH V D+TVR+WD++ C +F HN V C
Sbjct: 149 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208
Query: 600 IQFNPMDD-DYFISGSLDAKVRIWSI 624
+ + Y ++GS D + +W +
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 66/331 (19%), Positives = 127/331 (38%), Gaps = 50/331 (15%)
Query: 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI-------HP 498
++ H+G +W +K++ L S DR + VW++++ + EG+ + + +
Sbjct: 157 QLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 499 SLCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXDY---VHVPETVFSLSEKPFCSFI--GH 553
++ DY H PE E P+ + GH
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE------ENPYFVGVLRGH 269
Query: 554 LDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFIS 612
+ V D T+ +WD+ CL + + H D + ++ + IS
Sbjct: 270 MASV-RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCIS 327
Query: 613 GSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY--SIEDSKL 670
S+D +RIW + + ++ YT G AL+G + S + + D +
Sbjct: 328 ASMDTTIRIWDLENGELM-------------YTLQGHTALVGLLRLSDKFLVSAAADGSI 374
Query: 671 HQLNQVDFQTK---KKSSTRKITGFQFSPSNPSEVLVTSADSRIRI--LDGLDIVHKFRG 725
+ D+ K ++ IT F S + +LV+ ++++ I L +VH
Sbjct: 375 RGWDANDYSRKFSYHHTNLSAITTFYVSDN----ILVSGSENQFNIYNLRSGKLVHA--N 428
Query: 726 FRNTSSQISAAFNADGKYIISASE-DSQVYV 755
+ QI + N GK +++A E D Q ++
Sbjct: 429 ILKDADQIWSV-NFKGKTLVAAVEKDGQSFL 458
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 32/182 (17%)
Query: 592 AHNDYVTCIQFNPMDD-DYFISGSLDAKVRIWSISD----------RLVVDWTDLHEMVT 640
AH D VT I P+D+ D +S S D + +W ++ RL T V
Sbjct: 380 AHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL----TGHSHFVE 434
Query: 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK-KSSTRKITGFQFSPSNP 699
+ DGQ AL GS G RL+ + T++ T+ + FS N
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDL---------AAGVSTRRFVGHTKDVLSVAFSLDN- 484
Query: 700 SEVLVTSADSRIRILDGLD-----IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754
+++ S D I++ + L I G R+ S + + N I+SAS D V
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 755 VW 756
VW
Sbjct: 545 VW 546
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 574 DKTVRLWDMET-KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
DKTV++W++ K L H YV+ + +P D SG D V +W +++ +
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYS 598
Query: 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685
+ + ++ A C++P+ + L + + +++ +E + + +VD + + + +
Sbjct: 599 LEANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA 650
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496
+LS L + H G + T+ S D AS G+D V+ +W++ E + + E N + I
Sbjct: 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVI 605
Query: 497 HPSLC 501
H +LC
Sbjct: 606 H-ALC 609
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE-VQECEVMSMSEGN 492
DL+A + H + ++ FSLD R + SA DR I +W + EC+ ++SEG
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGG 513
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 573 MDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI-SDRLVV 630
+D +RLWD+E +K + A + F+P D Y +G+ KV I+ + S +
Sbjct: 100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK-LHQLNQVDFQTKKKSSTRKI 689
+ + + Y+PDG+ G+ G ++ I K LH L + I
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL---------EGHAMPI 209
Query: 690 TGFQFSPSNPSEVLVTSA-DSRIRILD 715
FSP S++LVT++ D I+I D
Sbjct: 210 RSLTFSPD--SQLLVTASDDGYIKIYD 234
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 612 SGSLDAKVRIWSISDRLVVDWTDLHEM-VTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670
S SLDA +R+W + + + D + ++PD Q G+H G ++ +E K
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK- 155
Query: 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA-DSRIRILDGL--DIVHKFRGFR 727
+ T+ K I +SP + L + A D I I D ++H G
Sbjct: 156 ---KEYSLDTRGKF----ILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEG-- 204
Query: 728 NTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST 766
+ S F+ D + +++AS+D + ++ + A T
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496
I +I +S D ++LAS D +I+++++ +++ EG+ PI
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622
D +++WD+ + L + AH VTC+ +P D F+S S D ++ +W
Sbjct: 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 574 DKTVRLWDMETKSCLK----LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RL 628
D+ + +WD + + K + AH V C+ FNP + +GS D V +W + + +L
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 629 VVDWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQLNQV--------DF 678
+ + H + + ++P + L S G+ R ++ D SK+ + +
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASS--GTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713
T KI+ F ++P+ P + S D+ ++I
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI 403
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 594 NDYVTCIQFNP--MDDDYFISGSLDAKVRIWSISD--RLVVDWTDLHEM-VTAACYTPDG 648
+D + C+ F+P + ++ I+GS VR W + D + + +H V C++ DG
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98
Query: 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681
S + +++ + ++ Q+ Q D K
Sbjct: 99 SKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK 131
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIW---SISDRLVVDWTDLHEM-VTAACYTP-D 647
H VT +FNP D + S+DA V++W +I D+ HE V AA + P D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 648 GQNALIGSHKGSCRLYSIED-SK-----LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701
L + R+YS D SK +H Q T K++ + + P +
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD 321
Query: 702 VLVTSADSRIRILDG--LDIVHKFRGFRNTSSQISA-AFNADGKYIISASEDSQVYVWKR 758
L+ + I I D +VH+ R N + IS F+ G ++++ + +W R
Sbjct: 322 QLLLNDKRTIDIYDANSGGLVHQLRD-PNAAGIISLNKFSPTGD-VLASGMGFNILIWNR 379
Query: 759 EE 760
E+
Sbjct: 380 ED 381
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 574 DKTVRLWDMETKSCLK----LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RL 628
D+ + +WD + + K + AH V C+ FNP + +GS D V +W + + +L
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 629 VVDWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQLNQV--------DF 678
+ + H + + ++P + L S G+ R ++ D SK+ + +
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASS--GTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713
T KI+ F ++P+ P + S D+ +I
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQI 403
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVW 478
C ++ HE ++W++ F + LAS +DR + +W
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 22/197 (11%)
Query: 574 DKTVRLWDMETKS--CLKLFA--HNDYVTCIQFNPMDDDYFISGSLDAKVRIW--SISDR 627
D+ +R+W E S C + + H V + ++P + Y S S DA IW + D
Sbjct: 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDATTCIWKKNQDDF 95
Query: 628 LVVDWTDLHE-MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686
V + HE V + + P G S S ++ +++ ++ V S T
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-----LNSHT 150
Query: 687 RKITGFQFSPSNPSEVLVT-SADSRIRIL----DGLDIVHKFRGFRNTSSQISAAFNADG 741
+ + + PS E+L + S D +++ D G +T S AF+ G
Sbjct: 151 QDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTV--WSLAFDPSG 206
Query: 742 KYIISASEDSQVYVWKR 758
+ + S S+D V +W++
Sbjct: 207 QRLASCSDDRTVRIWRQ 223
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 23/158 (14%)
Query: 574 DKTVRLWDMETKSCLK----LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI----- 624
D+ + +WD + + K + AH V C+ FNP + +GS D V +W +
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 308
Query: 625 ---------SDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675
+ V W+ +E + A+ T N S G + S ED+ +
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ--SPEDA---EDGP 363
Query: 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713
+ T KI+ F ++P+ P + S D+ +++
Sbjct: 364 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQV 401
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIW---SISDRLVVDWTDLHEM-VTAACYTP-D 647
H VT +FNP D + S+DA V++W +I D+ HE V AA + P D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 648 GQNALIGSHKGSCRLYSIED-SK-----LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701
L + R+YS D SK +H Q T K++ + + P +
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD 322
Query: 702 VLVTSADSRIRILDG--LDIVHKFRGFRNTSSQISA-AFNADGKYIISASEDSQVYVWKR 758
L+ + I I D +VH+ R N + IS F+ G ++++ + +W R
Sbjct: 323 QLLLNDKRTIDIYDANSGGLVHQLRD-PNAAGIISLNKFSPTGD-VLASGMGFNILIWNR 380
Query: 759 EE 760
E+
Sbjct: 381 ED 382
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 574 DKTVRLWDMETKSCLK----LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RL 628
D+ + +WD + K + AH V C+ FNP + +GS D V +W + + +L
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 629 VVDWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV--------DFQ 679
+ + H + + ++P + ++ S RL+ + SK+ + +
Sbjct: 315 KLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 373
Query: 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713
T KI+ F ++P+ P + S D+ +++
Sbjct: 374 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 407
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 574 DKTVRLWDMETKSCLK----LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RL 628
D+ + +WD + K + AH V C+ FNP + +GS D V +W + + +L
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 629 VVDWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV--------DFQ 679
+ + H + + ++P + ++ S RL+ + SK+ + +
Sbjct: 313 KLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 371
Query: 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713
T KI+ F ++P+ P + S D+ +++
Sbjct: 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 574 DKTVRLWDMETKSCLK----LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RL 628
D+ + +WD + K + AH V C+ FNP + +GS D V +W + + +L
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 629 VVDWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV--------DFQ 679
+ + H + + ++P + ++ S RL+ + SK+ + +
Sbjct: 317 KLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 375
Query: 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713
T KI+ F ++P+ P + S D+ +++
Sbjct: 376 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 409
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 77/200 (38%), Gaps = 33/200 (16%)
Query: 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQN- 650
H V +Q+ P D F S S D +++W + D + E V + +P
Sbjct: 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKH 156
Query: 651 --ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708
+G+ +L ++ + Q Q +I +SP + SAD
Sbjct: 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ--------EILAVSWSPRYDYILATASAD 208
Query: 709 SRIRILD-----GLDIV---HKFRGFRNTSSQISA--------AFNADGKYIISASEDSQ 752
SR+++ D G I H + + S +A F +DG ++++ D++
Sbjct: 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268
Query: 753 VYVWKREEHRNASTGKRAII 772
+ +W N+S G+ ++
Sbjct: 269 MRLW------NSSNGENTLV 282
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 574 DKTVRLW---DMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630
D T+R+W + +++C + H+ + + + DD IS S+D VR+WS+ ++
Sbjct: 268 DGTLRIWHGGNGNSQNCF--YGHSQSIVSASW--VGDDKVISCSMDGSVRLWSLKQNTLL 323
Query: 631 DWTDLHEM-VTAACYTPDGQNALIGSHKGSCRLYSIE 666
+ + + + A + DGQ + G +Y ++
Sbjct: 324 ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV 485
AH GS++ + +S D +ASA D+ I +W V +V
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEV 480
+ L E H G +W++ ++L L+SAG+D + +W+
Sbjct: 296 VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEV 480
+ L E H G +W++ ++L L+SAG+D + +W+
Sbjct: 294 VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 333
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEV 480
+ L E H G +W++ ++L L+SAG+D + +W+
Sbjct: 296 VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 544 EKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603
E P + IGH +V DKT ++W E L AHN V +
Sbjct: 94 EDPLYTLIGHQGNVCSLSFQDGVVISGS-WDKTAKVWK-EGSLVYNLQAHNASVWDAKVV 151
Query: 604 PMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662
++ F++ S D +++W +D+++ ++ +H V D + + S+ G +L
Sbjct: 152 SFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKL 209
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 362 ANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGD 408
A YL KS++M KR G L ++I+ SM + + CI+ N L +
Sbjct: 139 ARRYLEKSIKMGKRNGLHLSEHIRNEIKSMKKRMSELCIDFNKNLNE 185
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 362 ANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGD 408
A YL KS++M KR G L ++I+ SM + + CI+ N L +
Sbjct: 139 ARRYLEKSIKMGKRNGLHLSEHIRNEIKSMKKRMSELCIDFNKNLNE 185
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 771 IITTRNHEHFQCKDVSVAIP 790
II T NHEH++CK V AIP
Sbjct: 244 IIETLNHEHYECKYVINAIP 263
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 771 IITTRNHEHFQCKDVSVAIP 790
II T NHEH++CK V AIP
Sbjct: 255 IIETLNHEHYECKYVINAIP 274
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 771 IITTRNHEHFQCKDVSVAIP 790
II T NHEH++CK V AIP
Sbjct: 244 IIETLNHEHYECKYVINAIP 263
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 771 IITTRNHEHFQCKDVSVAIP 790
I+ T NHEH++CK V AIP
Sbjct: 263 IVETLNHEHYECKYVISAIP 282
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 439 SALHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIH 497
+A++ H S+ T+KF+ LAS G + I +W++ +C + S N TP+
Sbjct: 101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC---TESPSNYTPLT 157
Query: 498 P 498
P
Sbjct: 158 P 158
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 94 PDYDVWMLAPGSITERRKRLFQDMGLSRD 122
P +DVW+ P + + ++ D+GL RD
Sbjct: 22 PTFDVWLWEPNEMLSCLEHMYHDLGLVRD 50
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 573 MDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625
+D T+ +++ LK + HN +T + NP+ ISGS D ++ WS S
Sbjct: 317 LDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSS 365
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 577 VRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI-SDRLVVDWTD 634
+R+ + T C+K + H + + ++F+P D + +S S D +R+W+I +D LV +
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 635 LH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670
+ + V +A Y G+ + S +L+ I ++
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVW 478
A H + H + ++++ D R LAS G D +++VW
Sbjct: 230 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 425 WVKVRQSGKSYK-DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE 482
W K + ++++ DL A+ I+ HE + + +S D +LA+ D+ + +WE E
Sbjct: 85 WAKEESADRTFEMDLLAI-----IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 577 VRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI-SDRLV 629
+R+ + T C+K + H + + ++F+P D + +S S D +R+W+I +D LV
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 146
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVW 478
A H + H + ++++ D R LAS G D +++VW
Sbjct: 219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 577 VRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI-SDRLV 629
+R+ + T C+K + H + + ++F+P D + +S S D +R+W+I +D LV
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 151
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 577 VRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI-SDRLV 629
+R+ + T C+K + H + + ++F+P D + +S S D +R+W+I +D LV
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 150
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 577 VRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI-SDRLV 629
+R+ + T C+K + H + + ++F+P D + +S S D +R+W+I +D LV
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 150
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 573 MDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622
+D T+ +++ LK + HN +T + NP+ ISGS D ++ W
Sbjct: 317 LDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIXEW 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,254,976
Number of Sequences: 62578
Number of extensions: 790798
Number of successful extensions: 2985
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 2190
Number of HSP's gapped (non-prelim): 545
length of query: 969
length of database: 14,973,337
effective HSP length: 108
effective length of query: 861
effective length of database: 8,214,913
effective search space: 7073040093
effective search space used: 7073040093
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)