Query 002086
Match_columns 969
No_of_seqs 985 out of 5072
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 16:11:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 4.7E-71 1E-75 635.3 45.8 589 297-966 106-712 (712)
2 KOG0318 WD40 repeat stress pro 100.0 7.4E-40 1.6E-44 357.6 38.0 399 299-761 115-562 (603)
3 KOG0271 Notchless-like WD40 re 100.0 1.3E-36 2.8E-41 321.0 27.4 328 332-757 109-479 (480)
4 KOG0271 Notchless-like WD40 re 100.0 4.3E-36 9.2E-41 317.1 26.4 335 423-870 87-465 (480)
5 KOG0286 G-protein beta subunit 100.0 7.9E-33 1.7E-37 284.4 31.2 288 443-757 47-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-34 5.1E-39 308.1 19.9 289 441-757 165-458 (459)
7 KOG0319 WD40-repeat-containing 100.0 4.6E-33 9.9E-38 315.3 28.4 434 290-766 63-584 (775)
8 KOG0279 G protein beta subunit 100.0 8.4E-32 1.8E-36 275.6 29.1 302 440-843 4-312 (315)
9 KOG0291 WD40-repeat-containing 100.0 1.7E-30 3.8E-35 294.1 41.8 513 265-848 63-616 (893)
10 KOG0279 G protein beta subunit 100.0 2.9E-31 6.2E-36 271.7 29.5 291 331-759 8-313 (315)
11 KOG0291 WD40-repeat-containing 100.0 8.7E-31 1.9E-35 296.5 34.7 377 315-765 169-618 (893)
12 KOG0315 G-protein beta subunit 100.0 5.5E-31 1.2E-35 265.2 29.2 290 464-784 11-307 (311)
13 KOG0318 WD40 repeat stress pro 100.0 3.8E-29 8.1E-34 274.1 42.1 465 267-875 28-548 (603)
14 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-31 9.9E-36 283.0 17.6 281 335-715 172-458 (459)
15 KOG0263 Transcription initiati 100.0 4.5E-30 9.7E-35 294.5 26.0 211 439-720 439-652 (707)
16 KOG0263 Transcription initiati 100.0 8.3E-30 1.8E-34 292.3 24.3 275 446-761 373-651 (707)
17 KOG0306 WD40-repeat-containing 100.0 2.8E-28 6E-33 276.2 35.7 479 315-880 89-659 (888)
18 KOG0275 Conserved WD40 repeat- 100.0 3.2E-31 6.9E-36 274.1 10.6 265 591-869 210-492 (508)
19 KOG0282 mRNA splicing factor [ 100.0 1.9E-30 4.1E-35 282.5 17.1 286 440-796 203-500 (503)
20 KOG0284 Polyadenylation factor 100.0 3.7E-30 8.1E-35 274.6 16.1 285 382-761 93-382 (464)
21 KOG0265 U5 snRNP-specific prot 100.0 6.3E-29 1.4E-33 256.7 24.5 267 444-785 40-316 (338)
22 KOG0319 WD40-repeat-containing 100.0 8.5E-29 1.8E-33 280.8 27.0 451 267-760 72-620 (775)
23 KOG0286 G-protein beta subunit 100.0 3.4E-28 7.3E-33 250.4 28.1 289 332-715 49-343 (343)
24 KOG0265 U5 snRNP-specific prot 100.0 2E-28 4.3E-33 253.0 25.6 249 446-757 85-336 (338)
25 KOG0295 WD40 repeat-containing 100.0 7.6E-29 1.7E-33 261.6 23.0 274 440-790 97-389 (406)
26 KOG0273 Beta-transducin family 100.0 1.6E-27 3.5E-32 258.6 31.3 241 451-763 235-486 (524)
27 KOG0282 mRNA splicing factor [ 100.0 3.4E-29 7.3E-34 272.8 16.0 278 542-867 202-485 (503)
28 KOG0285 Pleiotropic regulator 100.0 6E-28 1.3E-32 253.6 23.0 288 441-760 141-440 (460)
29 KOG0316 Conserved WD40 repeat- 100.0 2E-27 4.3E-32 237.8 25.2 245 443-762 9-260 (307)
30 KOG0295 WD40 repeat-containing 100.0 6.9E-28 1.5E-32 254.4 22.1 252 437-758 136-405 (406)
31 cd00200 WD40 WD40 domain, foun 100.0 3.5E-26 7.5E-31 245.8 34.3 284 444-757 2-289 (289)
32 KOG0293 WD40 repeat-containing 100.0 1.7E-27 3.7E-32 254.2 22.7 289 442-805 215-510 (519)
33 KOG0273 Beta-transducin family 100.0 2E-26 4.3E-31 250.1 29.6 245 443-759 268-523 (524)
34 KOG0266 WD40 repeat-containing 100.0 1.7E-26 3.8E-31 270.9 31.1 246 443-759 195-454 (456)
35 KOG0645 WD40 repeat protein [G 100.0 2.5E-26 5.5E-31 234.5 27.2 283 441-759 4-311 (312)
36 KOG0315 G-protein beta subunit 100.0 6.6E-26 1.4E-30 228.7 28.8 290 349-737 9-308 (311)
37 KOG0306 WD40-repeat-containing 100.0 8.2E-26 1.8E-30 256.3 32.9 283 445-760 367-665 (888)
38 KOG0266 WD40 repeat-containing 99.9 7.1E-26 1.5E-30 265.7 32.1 251 444-761 151-411 (456)
39 PLN00181 protein SPA1-RELATED; 99.9 2.2E-25 4.7E-30 279.8 38.5 253 446-761 478-740 (793)
40 KOG0645 WD40 repeat protein [G 99.9 4.5E-26 9.7E-31 232.8 25.2 296 330-716 6-310 (312)
41 KOG0292 Vesicle coat complex C 99.9 1.3E-25 2.8E-30 257.6 29.8 257 434-760 34-322 (1202)
42 KOG0292 Vesicle coat complex C 99.9 3.7E-26 7.9E-31 262.1 25.2 291 447-808 5-321 (1202)
43 KOG0296 Angio-associated migra 99.9 1.7E-25 3.7E-30 236.6 28.2 324 380-759 59-398 (399)
44 KOG0281 Beta-TrCP (transducin 99.9 2E-27 4.3E-32 248.4 13.0 245 435-761 221-479 (499)
45 KOG0643 Translation initiation 99.9 2.4E-25 5.1E-30 226.8 26.1 244 447-760 6-318 (327)
46 PLN00181 protein SPA1-RELATED; 99.9 1.5E-24 3.3E-29 272.1 39.4 244 450-758 531-792 (793)
47 KOG0293 WD40 repeat-containing 99.9 5.3E-26 1.2E-30 242.8 21.6 301 325-760 211-514 (519)
48 KOG1407 WD40 repeat protein [F 99.9 3.6E-25 7.9E-30 224.9 22.7 249 445-762 14-264 (313)
49 KOG0275 Conserved WD40 repeat- 99.9 9.7E-26 2.1E-30 233.6 18.4 255 449-763 211-471 (508)
50 KOG0296 Angio-associated migra 99.9 1.4E-24 3E-29 229.7 27.5 268 444-781 57-372 (399)
51 KOG0277 Peroxisomal targeting 99.9 1.3E-25 2.9E-30 227.2 18.7 242 450-758 59-308 (311)
52 KOG2106 Uncharacterized conser 99.9 1.3E-23 2.8E-28 229.4 35.1 415 299-786 166-605 (626)
53 KOG0281 Beta-TrCP (transducin 99.9 3E-26 6.6E-31 239.6 13.9 233 450-764 196-433 (499)
54 KOG0284 Polyadenylation factor 99.9 2.6E-25 5.6E-30 237.8 19.9 240 450-760 95-338 (464)
55 KOG1446 Histone H3 (Lys4) meth 99.9 1.6E-23 3.5E-28 219.1 31.7 255 440-761 3-264 (311)
56 KOG0313 Microtubule binding pr 99.9 2.1E-24 4.5E-29 229.3 25.0 272 422-759 114-418 (423)
57 KOG0276 Vesicle coat complex C 99.9 1.1E-24 2.4E-29 242.7 23.6 249 443-763 5-261 (794)
58 KOG0285 Pleiotropic regulator 99.9 1.3E-24 2.8E-29 228.7 22.3 214 539-763 136-352 (460)
59 KOG0276 Vesicle coat complex C 99.9 4.6E-24 1E-28 237.7 27.8 251 435-755 39-295 (794)
60 KOG0294 WD40 repeat-containing 99.9 8E-24 1.7E-28 220.3 26.4 244 442-761 34-283 (362)
61 KOG0310 Conserved WD40 repeat- 99.9 4.8E-24 1E-28 233.3 25.0 248 442-760 59-310 (487)
62 KOG0278 Serine/threonine kinas 99.9 1.5E-24 3.2E-29 218.8 17.7 249 439-761 47-299 (334)
63 cd00200 WD40 WD40 domain, foun 99.9 9E-23 1.9E-27 219.2 31.0 284 332-715 3-289 (289)
64 KOG0772 Uncharacterized conser 99.9 3.8E-24 8.3E-29 234.0 19.6 288 544-875 157-476 (641)
65 KOG0274 Cdc4 and related F-box 99.9 3.2E-23 6.9E-28 243.6 28.6 251 435-764 232-487 (537)
66 KOG1539 WD repeat protein [Gen 99.9 7E-23 1.5E-27 235.3 30.4 422 288-760 180-649 (910)
67 KOG0316 Conserved WD40 repeat- 99.9 1.2E-23 2.5E-28 210.9 20.6 280 543-875 6-289 (307)
68 PTZ00421 coronin; Provisional 99.9 2.1E-22 4.5E-27 236.3 33.9 256 450-762 19-293 (493)
69 KOG0772 Uncharacterized conser 99.9 7.6E-24 1.6E-28 231.7 20.1 302 443-759 159-487 (641)
70 KOG0288 WD40 repeat protein Ti 99.9 5.7E-24 1.2E-28 228.0 18.4 248 441-757 209-459 (459)
71 KOG1408 WD40 repeat protein [F 99.9 1E-21 2.2E-26 221.1 35.1 506 288-862 56-689 (1080)
72 KOG0278 Serine/threonine kinas 99.9 6.9E-24 1.5E-28 214.0 15.5 288 444-847 7-300 (334)
73 KOG0313 Microtubule binding pr 99.9 7.8E-23 1.7E-27 217.4 24.1 253 450-783 104-395 (423)
74 PTZ00421 coronin; Provisional 99.9 4.1E-22 8.8E-27 233.8 32.5 251 446-760 70-332 (493)
75 PTZ00420 coronin; Provisional 99.9 7.3E-22 1.6E-26 232.8 33.9 256 441-759 64-334 (568)
76 KOG0973 Histone transcription 99.9 2E-22 4.2E-27 239.0 28.3 270 441-762 59-358 (942)
77 KOG0274 Cdc4 and related F-box 99.9 2.5E-22 5.4E-27 236.0 28.6 236 450-764 207-446 (537)
78 KOG0647 mRNA export protein (c 99.9 2.6E-22 5.7E-27 208.0 24.9 246 449-764 25-286 (347)
79 KOG0268 Sof1-like rRNA process 99.9 7.4E-24 1.6E-28 223.7 13.0 287 442-761 57-347 (433)
80 KOG0305 Anaphase promoting com 99.9 2.3E-22 5E-27 228.4 26.0 252 437-761 203-463 (484)
81 KOG0640 mRNA cleavage stimulat 99.9 9.2E-23 2E-27 211.1 20.4 217 445-717 106-335 (430)
82 PTZ00420 coronin; Provisional 99.9 2E-21 4.2E-26 229.2 34.6 205 547-761 67-295 (568)
83 KOG0288 WD40 repeat protein Ti 99.9 2.1E-23 4.6E-28 223.6 15.9 245 445-761 169-419 (459)
84 KOG0299 U3 snoRNP-associated p 99.9 2.5E-22 5.4E-27 218.3 23.8 236 448-747 199-443 (479)
85 KOG2106 Uncharacterized conser 99.9 5.4E-20 1.2E-24 201.3 40.5 402 286-758 63-520 (626)
86 KOG0289 mRNA splicing factor [ 99.9 6.4E-22 1.4E-26 213.2 24.2 252 437-758 247-505 (506)
87 KOG0300 WD40 repeat-containing 99.9 3.5E-22 7.6E-27 207.0 20.9 251 441-762 138-431 (481)
88 KOG0299 U3 snoRNP-associated p 99.9 8.9E-22 1.9E-26 214.0 24.8 261 444-761 135-412 (479)
89 KOG1539 WD repeat protein [Gen 99.9 2.7E-21 5.8E-26 222.5 29.3 406 309-763 179-610 (910)
90 KOG0640 mRNA cleavage stimulat 99.9 4.8E-22 1E-26 205.9 20.5 210 547-763 105-339 (430)
91 KOG0277 Peroxisomal targeting 99.9 5.6E-22 1.2E-26 201.1 20.2 201 553-761 59-267 (311)
92 KOG0641 WD40 repeat protein [G 99.9 1E-20 2.2E-25 188.3 28.6 248 445-759 83-349 (350)
93 KOG0264 Nucleosome remodeling 99.9 9.7E-22 2.1E-26 214.1 21.8 254 449-760 122-405 (422)
94 KOG1036 Mitotic spindle checkp 99.9 4.6E-21 1E-25 199.8 25.3 241 450-762 12-265 (323)
95 KOG1407 WD40 repeat protein [F 99.9 1E-21 2.2E-26 200.0 19.4 268 548-869 14-285 (313)
96 KOG0283 WD40 repeat-containing 99.9 9.3E-22 2E-26 228.3 21.7 299 336-717 265-576 (712)
97 KOG1063 RNA polymerase II elon 99.9 1.9E-20 4.1E-25 211.8 31.0 359 440-869 180-677 (764)
98 KOG0289 mRNA splicing factor [ 99.9 4.2E-21 9E-26 207.0 24.5 238 451-760 219-463 (506)
99 KOG1332 Vesicle coat complex C 99.9 1.1E-21 2.3E-26 198.1 17.8 249 448-760 8-287 (299)
100 KOG0300 WD40 repeat-containing 99.9 3.5E-21 7.6E-26 199.6 21.7 321 291-717 148-476 (481)
101 KOG0310 Conserved WD40 repeat- 99.9 4.4E-21 9.5E-26 210.2 23.6 274 339-715 27-307 (487)
102 KOG0308 Conserved WD40 repeat- 99.9 1.1E-21 2.4E-26 220.2 18.5 248 450-761 20-287 (735)
103 KOG1408 WD40 repeat protein [F 99.9 1E-20 2.2E-25 213.2 25.5 365 288-761 325-715 (1080)
104 KOG2096 WD40 repeat protein [G 99.9 5.2E-21 1.1E-25 199.1 21.2 300 443-757 78-400 (420)
105 KOG0301 Phospholipase A2-activ 99.9 2.1E-20 4.6E-25 211.6 25.1 245 439-760 2-250 (745)
106 KOG0301 Phospholipase A2-activ 99.9 1.2E-20 2.6E-25 213.6 21.2 202 435-716 85-287 (745)
107 KOG1036 Mitotic spindle checkp 99.9 8.5E-20 1.8E-24 190.4 25.8 253 429-749 33-294 (323)
108 KOG0973 Histone transcription 99.9 3.4E-20 7.3E-25 220.2 24.8 260 449-762 11-315 (942)
109 KOG0646 WD40 repeat protein [G 99.9 5E-20 1.1E-24 200.9 22.9 220 435-715 107-348 (476)
110 KOG0643 Translation initiation 99.9 1.6E-19 3.4E-24 184.5 25.0 215 549-766 5-227 (327)
111 KOG0264 Nucleosome remodeling 99.9 2.7E-20 5.8E-25 202.9 20.7 224 441-718 167-405 (422)
112 KOG0269 WD40 repeat-containing 99.9 4.5E-21 9.7E-26 219.2 15.1 244 453-761 89-342 (839)
113 KOG1274 WD40 repeat protein [G 99.9 2.6E-19 5.7E-24 208.5 29.5 252 448-762 10-265 (933)
114 KOG0268 Sof1-like rRNA process 99.8 1.2E-20 2.5E-25 199.7 16.4 247 435-716 93-344 (433)
115 KOG0647 mRNA export protein (c 99.8 9.2E-20 2E-24 189.2 22.6 238 445-748 66-312 (347)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.1E-18 2.4E-23 192.2 32.7 260 437-762 17-282 (300)
117 KOG1446 Histone H3 (Lys4) meth 99.8 5.1E-19 1.1E-23 185.6 27.9 276 547-875 7-293 (311)
118 KOG0321 WD40 repeat-containing 99.8 1.1E-19 2.4E-24 203.9 22.6 293 455-808 53-391 (720)
119 KOG1273 WD40 repeat protein [G 99.8 8.2E-20 1.8E-24 190.1 19.5 286 557-880 26-317 (405)
120 KOG0302 Ribosome Assembly prot 99.8 1.6E-19 3.4E-24 192.1 21.9 261 446-757 146-436 (440)
121 KOG2048 WD40 repeat protein [G 99.8 5.9E-18 1.3E-22 191.8 33.8 249 450-761 24-277 (691)
122 KOG0308 Conserved WD40 repeat- 99.8 5.6E-20 1.2E-24 206.7 17.4 249 443-760 65-328 (735)
123 KOG4283 Transcription-coupled 99.8 3.3E-19 7.1E-24 184.0 21.4 289 550-885 39-364 (397)
124 KOG0646 WD40 repeat protein [G 99.8 4.9E-19 1.1E-23 193.2 23.2 203 553-766 80-314 (476)
125 KOG0267 Microtubule severing p 99.8 9E-21 2E-25 215.1 10.1 236 445-751 22-260 (825)
126 KOG0305 Anaphase promoting com 99.8 8.2E-19 1.8E-23 199.6 25.1 205 443-718 251-462 (484)
127 KOG1063 RNA polymerase II elon 99.8 1.3E-18 2.9E-23 197.0 26.0 285 447-761 263-650 (764)
128 KOG0641 WD40 repeat protein [G 99.8 2.1E-17 4.6E-22 164.7 31.3 270 441-760 23-304 (350)
129 KOG2445 Nuclear pore complex c 99.8 3.3E-18 7.1E-23 178.1 25.9 250 448-759 10-318 (361)
130 KOG0639 Transducin-like enhanc 99.8 3.7E-19 7.9E-24 194.3 19.2 238 450-758 464-703 (705)
131 KOG0650 WD40 repeat nucleolar 99.8 5E-19 1.1E-23 197.2 20.5 304 442-756 391-732 (733)
132 KOG0270 WD40 repeat-containing 99.8 4.9E-19 1.1E-23 192.1 19.3 205 550-762 239-452 (463)
133 KOG0321 WD40 repeat-containing 99.8 1.4E-18 3E-23 195.3 21.5 252 444-761 93-393 (720)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2E-17 4.3E-22 182.2 30.7 284 463-863 1-297 (300)
135 KOG4283 Transcription-coupled 99.8 8E-18 1.7E-22 173.8 24.7 227 447-720 39-279 (397)
136 KOG2055 WD40 repeat protein [G 99.8 5.3E-18 1.2E-22 184.6 23.2 304 370-759 198-512 (514)
137 KOG1273 WD40 repeat protein [G 99.8 6.2E-18 1.3E-22 176.2 22.7 240 454-762 26-283 (405)
138 KOG0639 Transducin-like enhanc 99.8 1.9E-18 4E-23 188.8 18.6 243 449-760 417-664 (705)
139 KOG0267 Microtubule severing p 99.8 1.6E-19 3.5E-24 205.1 10.1 190 447-707 66-258 (825)
140 KOG4328 WD40 protein [Function 99.8 9.8E-18 2.1E-22 182.5 23.3 262 437-761 172-452 (498)
141 KOG0269 WD40 repeat-containing 99.8 5.6E-18 1.2E-22 194.1 21.6 198 556-761 89-298 (839)
142 KOG0294 WD40 repeat-containing 99.8 3.4E-17 7.4E-22 171.1 25.0 218 419-718 60-282 (362)
143 KOG1034 Transcriptional repres 99.8 1.6E-17 3.5E-22 174.3 19.6 246 449-759 87-383 (385)
144 KOG2096 WD40 repeat protein [G 99.8 3.7E-17 8E-22 170.6 20.3 289 549-880 81-397 (420)
145 KOG4328 WD40 protein [Function 99.8 3.6E-17 7.8E-22 178.2 20.7 205 548-759 180-399 (498)
146 KOG1332 Vesicle coat complex C 99.8 1.4E-17 3E-22 168.5 16.2 210 441-715 46-284 (299)
147 KOG4378 Nuclear protein COP1 [ 99.8 3.3E-17 7.3E-22 179.0 20.3 210 565-788 91-304 (673)
148 KOG0303 Actin-binding protein 99.8 4.1E-17 8.9E-22 174.6 20.2 251 447-760 77-338 (472)
149 KOG2055 WD40 repeat protein [G 99.8 7.5E-17 1.6E-21 175.8 22.5 285 451-843 213-511 (514)
150 KOG0302 Ribosome Assembly prot 99.7 3.3E-17 7.1E-22 174.6 16.9 212 441-711 201-433 (440)
151 KOG2048 WD40 repeat protein [G 99.7 1.4E-15 3E-20 172.8 30.7 244 442-760 59-320 (691)
152 KOG0642 Cell-cycle nuclear pro 99.7 1.3E-17 2.9E-22 185.8 13.5 261 446-763 289-565 (577)
153 KOG0270 WD40 repeat-containing 99.7 3E-17 6.6E-22 178.3 15.8 207 447-720 239-452 (463)
154 KOG0644 Uncharacterized conser 99.7 5.2E-18 1.1E-22 194.7 9.5 250 439-762 178-471 (1113)
155 KOG0650 WD40 repeat nucleolar 99.7 3.2E-16 6.9E-21 175.1 20.4 288 545-880 391-730 (733)
156 KOG1538 Uncharacterized conser 99.7 4.6E-16 1E-20 174.6 20.3 247 437-760 39-294 (1081)
157 KOG0307 Vesicle coat complex C 99.7 5.3E-17 1.2E-21 193.9 13.5 249 452-762 65-330 (1049)
158 KOG1188 WD40 repeat protein [G 99.7 4.2E-16 9.1E-21 164.7 17.9 267 433-760 52-347 (376)
159 KOG1445 Tumor-specific antigen 99.7 1.9E-15 4.2E-20 169.0 23.6 123 639-762 630-753 (1012)
160 KOG2445 Nuclear pore complex c 99.7 6.1E-15 1.3E-19 153.9 25.5 207 551-760 10-257 (361)
161 KOG4378 Nuclear protein COP1 [ 99.7 7.7E-16 1.7E-20 168.5 19.7 197 434-697 104-304 (673)
162 KOG1274 WD40 repeat protein [G 99.7 3.3E-15 7.2E-20 174.6 26.0 232 450-756 55-297 (933)
163 KOG2919 Guanine nucleotide-bin 99.7 4E-15 8.6E-20 156.0 21.8 249 454-761 52-329 (406)
164 KOG4227 WD40 repeat protein [G 99.7 1.6E-15 3.4E-20 161.6 18.5 257 445-760 50-323 (609)
165 KOG2919 Guanine nucleotide-bin 99.7 4.2E-15 9E-20 155.8 21.3 282 557-880 52-363 (406)
166 KOG1034 Transcriptional repres 99.7 2.2E-15 4.9E-20 158.3 17.4 207 553-762 88-340 (385)
167 KOG1009 Chromatin assembly com 99.7 7.3E-15 1.6E-19 158.4 21.5 271 439-762 53-375 (434)
168 COG2319 FOG: WD40 repeat [Gene 99.7 9.7E-13 2.1E-17 148.4 40.2 289 446-762 60-362 (466)
169 KOG0303 Actin-binding protein 99.6 5E-15 1.1E-19 158.8 18.6 203 549-760 76-295 (472)
170 KOG1587 Cytoplasmic dynein int 99.6 1.7E-14 3.7E-19 169.0 24.2 249 450-761 241-518 (555)
171 COG2319 FOG: WD40 repeat [Gene 99.6 1.1E-12 2.3E-17 148.0 37.7 254 436-761 139-402 (466)
172 KOG1334 WD40 repeat protein [G 99.6 1.9E-15 4.1E-20 165.8 13.6 265 438-763 129-428 (559)
173 KOG1272 WD40-repeat-containing 99.6 1.9E-15 4.1E-20 164.9 11.0 284 557-883 132-417 (545)
174 KOG0322 G-protein beta subunit 99.6 8E-15 1.7E-19 150.2 14.1 249 444-758 7-322 (323)
175 KOG0290 Conserved WD40 repeat- 99.6 5.9E-14 1.3E-18 145.5 19.4 245 449-755 94-361 (364)
176 KOG1007 WD repeat protein TSSC 99.6 3.4E-14 7.4E-19 147.0 17.3 223 438-717 109-361 (370)
177 KOG1538 Uncharacterized conser 99.6 2.4E-12 5.1E-17 145.3 33.1 270 293-666 14-293 (1081)
178 PRK11028 6-phosphogluconolacto 99.6 1.1E-12 2.3E-17 148.3 31.1 256 442-760 26-305 (330)
179 KOG0307 Vesicle coat complex C 99.6 8E-15 1.7E-19 175.5 14.2 211 440-717 105-327 (1049)
180 KOG1310 WD40 repeat protein [G 99.6 1E-14 2.2E-19 161.5 13.8 242 440-763 39-307 (758)
181 KOG1517 Guanine nucleotide bin 99.6 2.3E-13 5E-18 160.5 24.5 276 421-761 1085-1383(1387)
182 KOG1007 WD repeat protein TSSC 99.6 1.2E-13 2.7E-18 142.9 19.5 255 445-760 57-362 (370)
183 KOG1445 Tumor-specific antigen 99.5 4.8E-14 1.1E-18 157.9 14.4 249 450-760 626-888 (1012)
184 KOG4227 WD40 repeat protein [G 99.5 4.2E-13 9.1E-18 143.3 20.5 207 549-761 51-276 (609)
185 KOG1188 WD40 repeat protein [G 99.5 6.7E-13 1.4E-17 140.7 20.6 247 464-777 41-315 (376)
186 KOG1963 WD40 repeat protein [G 99.5 1E-11 2.2E-16 145.9 32.2 254 449-761 203-540 (792)
187 KOG2110 Uncharacterized conser 99.5 5.8E-12 1.3E-16 135.0 27.2 236 451-762 5-251 (391)
188 KOG0290 Conserved WD40 repeat- 99.5 4.5E-13 9.7E-18 139.0 17.9 245 389-708 100-357 (364)
189 KOG1963 WD40 repeat protein [G 99.5 2.1E-12 4.5E-17 151.5 25.6 315 434-764 40-380 (792)
190 KOG1240 Protein kinase contain 99.5 1.5E-12 3.2E-17 156.2 24.6 262 440-762 1037-1337(1431)
191 KOG1524 WD40 repeat-containing 99.5 3.5E-13 7.5E-18 149.1 17.7 191 543-758 93-285 (737)
192 KOG1587 Cytoplasmic dynein int 99.5 1.4E-12 3.1E-17 152.9 23.3 207 553-761 241-474 (555)
193 KOG1517 Guanine nucleotide bin 99.5 3.9E-12 8.4E-17 150.4 24.6 247 449-760 1062-1334(1387)
194 KOG0642 Cell-cycle nuclear pro 99.5 4E-13 8.7E-18 150.4 14.8 221 441-722 334-566 (577)
195 KOG2321 WD40 repeat protein [G 99.5 1.3E-12 2.8E-17 146.1 18.5 281 439-760 40-344 (703)
196 KOG0771 Prolactin regulatory e 99.5 4.9E-13 1.1E-17 145.6 14.9 190 455-715 148-352 (398)
197 KOG1524 WD40 repeat-containing 99.5 8E-13 1.7E-17 146.3 16.6 188 440-714 93-283 (737)
198 KOG0771 Prolactin regulatory e 99.5 4.6E-12 9.9E-17 138.1 21.6 197 558-760 148-355 (398)
199 KOG1523 Actin-related protein 99.5 5E-12 1.1E-16 133.2 21.1 252 447-759 6-278 (361)
200 KOG0649 WD40 repeat protein [G 99.4 1.8E-11 3.9E-16 124.3 22.6 247 451-760 10-275 (325)
201 KOG1009 Chromatin assembly com 99.4 4.6E-12 1E-16 137.0 18.9 166 451-669 13-198 (434)
202 KOG2110 Uncharacterized conser 99.4 1E-10 2.2E-15 125.6 28.6 234 450-760 86-331 (391)
203 KOG0649 WD40 repeat protein [G 99.4 5.2E-11 1.1E-15 121.1 24.2 245 445-757 56-314 (325)
204 KOG0322 G-protein beta subunit 99.4 8E-12 1.7E-16 128.4 17.8 262 436-716 40-322 (323)
205 PRK11028 6-phosphogluconolacto 99.4 1.4E-10 3E-15 131.1 30.0 201 555-760 35-259 (330)
206 PRK01742 tolB translocation pr 99.4 1.4E-11 3E-16 144.3 21.3 235 574-868 183-427 (429)
207 KOG1310 WD40 repeat protein [G 99.4 2E-12 4.4E-17 143.5 11.9 174 548-721 44-235 (758)
208 KOG2394 WD40 protein DMR-N9 [G 99.4 2E-11 4.3E-16 135.9 19.4 165 565-738 185-383 (636)
209 KOG0644 Uncharacterized conser 99.4 6.5E-13 1.4E-17 153.4 8.0 278 545-844 181-468 (1113)
210 KOG1523 Actin-related protein 99.4 4.7E-11 1E-15 126.0 20.9 208 549-762 5-239 (361)
211 KOG1334 WD40 repeat protein [G 99.4 3.5E-12 7.7E-17 140.5 12.3 301 331-761 135-468 (559)
212 KOG2111 Uncharacterized conser 99.4 3.4E-10 7.3E-15 119.6 26.1 176 575-761 75-258 (346)
213 PRK01742 tolB translocation pr 99.3 7.9E-11 1.7E-15 137.9 23.6 206 539-759 188-401 (429)
214 KOG1240 Protein kinase contain 99.3 5.4E-10 1.2E-14 134.7 27.0 220 534-761 1028-1275(1431)
215 KOG1272 WD40-repeat-containing 99.3 1.4E-11 2.9E-16 135.2 10.4 231 452-758 130-361 (545)
216 PRK03629 tolB translocation pr 99.3 9.2E-10 2E-14 128.9 26.5 218 446-739 193-427 (429)
217 KOG3881 Uncharacterized conser 99.3 4E-10 8.7E-15 121.9 21.1 203 552-763 103-324 (412)
218 PRK03629 tolB translocation pr 99.3 1.6E-09 3.4E-14 126.9 27.5 207 540-760 184-407 (429)
219 PF02239 Cytochrom_D1: Cytochr 99.2 6.6E-09 1.4E-13 118.7 31.3 263 435-762 20-350 (369)
220 PRK04922 tolB translocation pr 99.2 1.3E-09 2.9E-14 127.8 24.7 219 445-739 197-432 (433)
221 PRK05137 tolB translocation pr 99.2 2.3E-09 4.9E-14 126.0 25.9 206 542-760 189-413 (435)
222 KOG2139 WD40 repeat protein [G 99.2 1.7E-09 3.6E-14 115.8 22.1 300 451-759 98-431 (445)
223 PRK04922 tolB translocation pr 99.2 2.7E-09 5.9E-14 125.2 26.0 207 541-760 190-412 (433)
224 PRK05137 tolB translocation pr 99.2 2.3E-09 4.9E-14 126.0 25.1 221 444-739 194-432 (435)
225 KOG4497 Uncharacterized conser 99.2 9.5E-11 2.1E-15 123.6 11.8 347 456-885 13-390 (447)
226 KOG2139 WD40 repeat protein [G 99.2 9E-10 1.9E-14 117.9 19.2 194 554-760 98-310 (445)
227 PRK02889 tolB translocation pr 99.2 2.3E-09 5.1E-14 125.5 23.8 176 574-761 175-362 (427)
228 PRK02889 tolB translocation pr 99.2 5.7E-09 1.2E-13 122.2 25.6 220 445-739 189-424 (427)
229 KOG2394 WD40 protein DMR-N9 [G 99.1 1.1E-09 2.3E-14 122.4 16.7 101 545-646 281-384 (636)
230 KOG0974 WD-repeat protein WDR6 99.1 2.3E-08 4.9E-13 120.0 29.0 119 446-626 170-289 (967)
231 PF08662 eIF2A: Eukaryotic tra 99.1 5.5E-09 1.2E-13 108.7 21.1 113 553-669 58-182 (194)
232 KOG1354 Serine/threonine prote 99.1 2.4E-09 5.3E-14 113.9 17.6 259 450-761 24-361 (433)
233 PF08662 eIF2A: Eukaryotic tra 99.1 7.2E-09 1.6E-13 107.8 20.9 148 598-760 9-180 (194)
234 KOG2111 Uncharacterized conser 99.1 4E-08 8.7E-13 104.2 26.0 197 553-759 93-322 (346)
235 PF10282 Lactonase: Lactonase, 99.1 8E-07 1.7E-11 101.2 38.6 250 451-760 36-323 (345)
236 KOG1409 Uncharacterized conser 99.1 3.2E-09 7E-14 113.1 16.9 343 331-760 17-395 (404)
237 TIGR02800 propeller_TolB tol-p 99.1 2E-08 4.2E-13 117.3 25.3 203 544-759 179-397 (417)
238 TIGR02800 propeller_TolB tol-p 99.1 1.7E-08 3.8E-13 117.7 24.7 190 445-708 183-385 (417)
239 KOG3881 Uncharacterized conser 99.1 1E-08 2.2E-13 111.2 20.0 204 447-719 101-322 (412)
240 KOG2315 Predicted translation 99.0 9.4E-08 2E-12 108.1 27.4 273 453-760 75-391 (566)
241 KOG0974 WD-repeat protein WDR6 99.0 1.6E-08 3.4E-13 121.2 19.1 195 555-761 88-290 (967)
242 PRK00178 tolB translocation pr 99.0 1.1E-07 2.4E-12 111.6 26.3 204 543-759 187-406 (430)
243 PRK00178 tolB translocation pr 99.0 1.4E-07 3.1E-12 110.7 26.0 200 445-717 192-406 (430)
244 PRK04792 tolB translocation pr 98.9 1.1E-07 2.4E-12 111.9 24.9 220 446-739 212-446 (448)
245 PF02239 Cytochrom_D1: Cytochr 98.9 3.4E-07 7.3E-12 104.7 27.7 194 566-761 6-204 (369)
246 KOG2041 WD40 repeat protein [G 98.9 1.2E-08 2.7E-13 116.6 14.8 250 451-750 14-279 (1189)
247 KOG4497 Uncharacterized conser 98.9 8.5E-08 1.8E-12 101.7 19.9 260 437-761 35-393 (447)
248 PRK04792 tolB translocation pr 98.9 1.8E-07 4E-12 110.1 25.1 200 548-759 211-425 (448)
249 TIGR02658 TTQ_MADH_Hv methylam 98.9 3.6E-06 7.9E-11 94.6 33.6 268 435-763 31-334 (352)
250 KOG2321 WD40 repeat protein [G 98.9 7.9E-08 1.7E-12 108.4 19.7 183 437-669 161-346 (703)
251 KOG1409 Uncharacterized conser 98.9 5.6E-08 1.2E-12 103.9 16.0 251 441-761 14-272 (404)
252 KOG0280 Uncharacterized conser 98.8 3.1E-07 6.8E-12 96.5 19.8 195 557-760 124-334 (339)
253 PF10282 Lactonase: Lactonase, 98.8 1E-05 2.2E-10 92.2 34.2 199 556-760 38-276 (345)
254 KOG4547 WD40 repeat-containing 98.8 9.5E-07 2.1E-11 100.9 24.1 139 566-715 71-218 (541)
255 KOG1064 RAVE (regulator of V-A 98.8 2.4E-08 5.3E-13 124.2 11.8 197 446-674 2203-2406(2439)
256 PLN02919 haloacid dehalogenase 98.8 5.9E-06 1.3E-10 106.3 33.9 206 556-762 625-891 (1057)
257 COG5354 Uncharacterized protei 98.8 2.9E-06 6.2E-11 95.2 26.6 273 451-760 71-396 (561)
258 COG2706 3-carboxymuconate cycl 98.8 4.5E-05 9.7E-10 83.2 34.6 253 447-760 35-322 (346)
259 KOG1064 RAVE (regulator of V-A 98.8 3E-08 6.6E-13 123.4 11.7 194 550-766 2204-2405(2439)
260 KOG0280 Uncharacterized conser 98.7 5.5E-07 1.2E-11 94.7 16.5 162 549-714 160-330 (339)
261 PRK01029 tolB translocation pr 98.7 4.4E-06 9.5E-11 97.9 25.7 203 547-760 177-404 (428)
262 KOG2315 Predicted translation 98.7 2.8E-05 6.2E-10 88.5 30.5 289 451-765 34-350 (566)
263 COG2706 3-carboxymuconate cycl 98.7 3.4E-05 7.4E-10 84.0 30.0 203 552-760 37-275 (346)
264 PF04762 IKI3: IKI3 family; I 98.7 1.5E-05 3.3E-10 100.8 31.8 290 450-761 119-458 (928)
265 KOG1354 Serine/threonine prote 98.7 1.5E-06 3.4E-11 93.0 19.2 165 551-717 161-359 (433)
266 KOG4190 Uncharacterized conser 98.6 1.3E-07 2.8E-12 105.5 11.0 240 444-755 777-1032(1034)
267 KOG2314 Translation initiation 98.6 2.9E-06 6.2E-11 95.8 21.4 290 441-760 241-574 (698)
268 KOG4190 Uncharacterized conser 98.6 6.1E-08 1.3E-12 108.1 8.3 245 444-757 728-986 (1034)
269 KOG4547 WD40 repeat-containing 98.6 3.1E-06 6.6E-11 96.8 21.3 185 565-760 5-221 (541)
270 PRK01029 tolB translocation pr 98.6 8.9E-06 1.9E-10 95.3 25.9 173 557-740 233-425 (428)
271 COG5170 CDC55 Serine/threonine 98.6 2.2E-06 4.8E-11 90.5 16.6 251 450-760 25-368 (460)
272 KOG4532 WD40-like repeat conta 98.5 2.5E-05 5.4E-10 81.5 21.8 189 566-760 129-332 (344)
273 PF15492 Nbas_N: Neuroblastoma 98.5 5.2E-05 1.1E-09 80.4 24.5 189 557-763 46-263 (282)
274 PF08450 SGL: SMP-30/Gluconola 98.5 0.00039 8.5E-09 75.1 31.8 219 456-747 4-243 (246)
275 PF00400 WD40: WD domain, G-be 98.4 5.1E-07 1.1E-11 67.8 6.4 38 442-479 2-39 (39)
276 KOG4714 Nucleoporin [Nuclear s 98.4 3.5E-06 7.6E-11 87.4 14.2 182 565-757 101-316 (319)
277 COG4946 Uncharacterized protei 98.4 0.00021 4.5E-09 79.8 28.5 175 561-748 328-507 (668)
278 COG4946 Uncharacterized protei 98.4 0.00017 3.7E-09 80.4 27.8 245 449-760 357-655 (668)
279 PRK04043 tolB translocation pr 98.4 0.00012 2.5E-09 85.5 28.2 190 556-760 189-401 (419)
280 PF13360 PQQ_2: PQQ-like domai 98.4 0.0002 4.3E-09 76.5 27.9 190 565-762 36-233 (238)
281 TIGR03300 assembly_YfgL outer 98.4 4.6E-05 1E-09 87.8 24.3 188 565-762 105-300 (377)
282 KOG1912 WD40 repeat protein [G 98.4 2.1E-05 4.5E-10 92.0 20.0 260 435-764 39-369 (1062)
283 TIGR03300 assembly_YfgL outer 98.3 0.00015 3.2E-09 83.6 25.9 180 565-762 145-341 (377)
284 COG5354 Uncharacterized protei 98.3 0.00014 3E-09 82.1 24.1 239 447-761 28-308 (561)
285 PLN02919 haloacid dehalogenase 98.3 0.00016 3.4E-09 93.5 28.4 201 558-760 571-834 (1057)
286 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.0011 2.4E-08 74.9 31.1 180 573-761 75-289 (352)
287 KOG4532 WD40-like repeat conta 98.3 5.1E-05 1.1E-09 79.2 18.7 197 559-761 72-284 (344)
288 KOG4714 Nucleoporin [Nuclear s 98.3 3.7E-06 8.1E-11 87.2 10.1 71 556-626 181-255 (319)
289 KOG0882 Cyclophilin-related pe 98.3 5.4E-06 1.2E-10 91.6 11.4 205 553-765 8-237 (558)
290 KOG0309 Conserved WD40 repeat- 98.2 3.9E-06 8.4E-11 97.2 10.2 237 420-716 79-338 (1081)
291 KOG2695 WD40 repeat protein [G 98.2 2E-06 4.4E-11 92.2 7.3 151 611-766 228-383 (425)
292 KOG2041 WD40 repeat protein [G 98.2 3.9E-05 8.4E-10 88.8 17.4 249 437-758 57-336 (1189)
293 KOG3914 WD repeat protein WDR4 98.2 1.8E-05 3.9E-10 86.9 13.8 155 600-767 68-231 (390)
294 PRK04043 tolB translocation pr 98.2 0.00059 1.3E-08 79.7 27.0 190 452-716 188-399 (419)
295 KOG2695 WD40 repeat protein [G 98.2 5.4E-06 1.2E-10 89.0 8.9 140 553-696 251-402 (425)
296 COG5170 CDC55 Serine/threonine 98.2 7.7E-06 1.7E-10 86.5 9.9 206 553-761 25-311 (460)
297 KOG1912 WD40 repeat protein [G 98.2 0.00017 3.7E-09 84.6 21.6 211 549-760 50-305 (1062)
298 KOG0309 Conserved WD40 repeat- 98.2 8.5E-06 1.8E-10 94.5 10.8 197 557-760 70-278 (1081)
299 KOG2314 Translation initiation 98.1 0.00025 5.5E-09 80.6 21.4 241 454-760 213-526 (698)
300 PF08450 SGL: SMP-30/Gluconola 98.1 0.0022 4.7E-08 69.3 28.4 187 559-759 4-213 (246)
301 KOG3914 WD repeat protein WDR4 98.1 3.4E-05 7.3E-10 84.8 13.9 153 559-721 67-227 (390)
302 PF04762 IKI3: IKI3 family; I 98.0 0.0048 1E-07 78.6 32.1 291 450-760 208-565 (928)
303 KOG1275 PAB-dependent poly(A) 98.0 0.00015 3.2E-09 86.7 16.4 179 565-757 147-340 (1118)
304 KOG1832 HIV-1 Vpr-binding prot 98.0 5E-06 1.1E-10 97.9 3.9 203 437-672 1087-1297(1516)
305 KOG1832 HIV-1 Vpr-binding prot 98.0 4.1E-06 8.9E-11 98.5 3.2 199 545-765 1092-1297(1516)
306 KOG0882 Cyclophilin-related pe 97.9 0.00021 4.5E-09 79.5 15.0 254 449-763 7-309 (558)
307 KOG2066 Vacuolar assembly/sort 97.9 0.00057 1.2E-08 81.1 19.0 187 451-717 39-233 (846)
308 PF15492 Nbas_N: Neuroblastoma 97.9 0.0027 5.8E-08 67.7 22.2 193 454-721 46-263 (282)
309 PF00400 WD40: WD domain, G-be 97.8 3E-05 6.5E-10 58.0 5.2 37 545-581 2-39 (39)
310 KOG1645 RING-finger-containing 97.8 0.00086 1.9E-08 73.9 17.8 82 546-627 185-268 (463)
311 PF13360 PQQ_2: PQQ-like domai 97.8 0.0063 1.4E-07 64.8 24.6 145 565-723 76-236 (238)
312 KOG1275 PAB-dependent poly(A) 97.8 0.00024 5.3E-09 84.9 14.1 164 437-664 163-340 (1118)
313 PRK11138 outer membrane biogen 97.8 0.016 3.6E-07 67.2 29.2 179 565-758 205-393 (394)
314 KOG1008 Uncharacterized conser 97.8 4E-05 8.7E-10 88.3 6.5 198 553-760 55-276 (783)
315 PF07433 DUF1513: Protein of u 97.7 0.0068 1.5E-07 66.4 23.1 200 559-764 9-252 (305)
316 KOG1920 IkappaB kinase complex 97.7 0.0015 3.2E-08 80.9 19.7 195 555-760 69-323 (1265)
317 PRK02888 nitrous-oxide reducta 97.7 0.0055 1.2E-07 72.9 23.7 186 565-760 141-405 (635)
318 PF07433 DUF1513: Protein of u 97.6 0.039 8.5E-07 60.6 27.0 231 456-753 9-279 (305)
319 PF11768 DUF3312: Protein of u 97.6 0.0017 3.7E-08 75.4 17.3 122 631-760 200-330 (545)
320 KOG2066 Vacuolar assembly/sort 97.6 0.0015 3.2E-08 77.7 16.8 184 555-760 40-234 (846)
321 KOG1645 RING-finger-containing 97.6 0.0012 2.6E-08 72.8 14.7 82 441-584 183-267 (463)
322 KOG2114 Vacuolar assembly/sort 97.5 0.024 5.2E-07 68.3 25.3 143 566-718 78-244 (933)
323 KOG1920 IkappaB kinase complex 97.5 0.019 4.2E-07 71.5 25.2 240 450-759 67-365 (1265)
324 PRK11138 outer membrane biogen 97.5 0.013 2.7E-07 68.2 22.7 190 565-762 120-315 (394)
325 PF06977 SdiA-regulated: SdiA- 97.5 0.047 1E-06 58.9 24.9 204 549-756 16-247 (248)
326 PF11768 DUF3312: Protein of u 97.4 0.00089 1.9E-08 77.7 11.7 112 556-669 207-332 (545)
327 PF08596 Lgl_C: Lethal giant l 97.4 0.02 4.4E-07 66.1 22.0 276 453-758 3-334 (395)
328 KOG2114 Vacuolar assembly/sort 97.3 0.015 3.2E-07 70.0 20.4 189 565-760 35-244 (933)
329 COG0823 TolB Periplasmic compo 97.3 0.025 5.4E-07 66.0 21.5 194 546-750 184-390 (425)
330 KOG3617 WD40 and TPR repeat-co 97.3 0.0065 1.4E-07 72.3 16.0 68 557-625 62-131 (1416)
331 PF00780 CNH: CNH domain; Int 97.2 0.098 2.1E-06 57.3 25.0 194 557-764 38-260 (275)
332 PF03178 CPSF_A: CPSF A subuni 97.2 0.068 1.5E-06 60.2 23.8 177 565-755 42-261 (321)
333 PF08596 Lgl_C: Lethal giant l 97.2 0.041 8.8E-07 63.6 22.0 203 556-761 3-292 (395)
334 PF08553 VID27: VID27 cytoplas 97.2 0.0058 1.3E-07 75.2 15.7 147 607-759 493-647 (794)
335 smart00320 WD40 WD40 repeats. 97.2 0.00085 1.9E-08 47.7 5.4 38 442-479 3-40 (40)
336 KOG1008 Uncharacterized conser 97.2 0.00027 5.9E-09 81.7 3.7 162 550-716 98-274 (783)
337 PF04053 Coatomer_WDAD: Coatom 97.1 0.12 2.6E-06 60.6 25.0 180 558-760 72-263 (443)
338 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.089 1.9E-06 55.5 20.4 220 606-844 22-249 (354)
339 PF03178 CPSF_A: CPSF A subuni 97.0 0.12 2.5E-06 58.3 23.6 173 575-760 2-203 (321)
340 PF06433 Me-amine-dh_H: Methyl 97.0 0.52 1.1E-05 52.6 27.0 185 574-762 117-323 (342)
341 KOG3617 WD40 and TPR repeat-co 97.0 0.013 2.7E-07 70.0 14.6 69 454-583 62-131 (1416)
342 PF14583 Pectate_lyase22: Olig 96.9 0.59 1.3E-05 53.1 27.2 177 565-750 92-303 (386)
343 cd00216 PQQ_DH Dehydrogenases 96.9 0.21 4.6E-06 59.8 25.4 177 573-764 173-429 (488)
344 COG3391 Uncharacterized conser 96.8 0.27 6E-06 56.8 24.7 199 558-761 77-285 (381)
345 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.046 9.9E-07 50.9 14.0 102 597-712 2-109 (111)
346 KOG3621 WD40 repeat-containing 96.8 0.011 2.4E-07 69.7 12.2 149 555-711 34-192 (726)
347 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.27 5.8E-06 52.0 20.7 106 565-672 23-129 (354)
348 PF08553 VID27: VID27 cytoplas 96.7 0.054 1.2E-06 66.9 18.2 133 572-715 501-645 (794)
349 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.089 1.9E-06 49.0 15.3 99 557-661 2-109 (111)
350 PF05096 Glu_cyclase_2: Glutam 96.6 0.98 2.1E-05 48.9 24.8 199 442-705 34-249 (264)
351 KOG2395 Protein involved in va 96.6 0.056 1.2E-06 62.1 16.0 146 609-759 348-500 (644)
352 cd00216 PQQ_DH Dehydrogenases 96.6 0.68 1.5E-05 55.5 26.2 155 566-724 111-326 (488)
353 KOG3621 WD40 repeat-containing 96.5 0.032 6.9E-07 66.1 13.7 114 601-718 40-155 (726)
354 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.22 4.8E-06 57.0 20.6 162 576-748 159-346 (353)
355 PF06977 SdiA-regulated: SdiA- 96.5 1.5 3.3E-05 47.4 25.4 205 445-714 15-247 (248)
356 PRK02888 nitrous-oxide reducta 96.4 0.12 2.7E-06 61.8 18.3 150 565-718 236-405 (635)
357 PF04841 Vps16_N: Vps16, N-ter 96.4 0.53 1.2E-05 55.0 23.7 173 576-760 62-247 (410)
358 PF02897 Peptidase_S9_N: Proly 96.4 2.9 6.4E-05 48.7 29.8 194 560-761 175-406 (414)
359 KOG4640 Anaphase-promoting com 96.1 0.023 5E-07 66.4 9.5 91 554-646 20-115 (665)
360 COG3391 Uncharacterized conser 96.1 2.2 4.9E-05 49.3 26.0 155 557-719 118-285 (381)
361 COG3386 Gluconolactonase [Carb 96.0 1.7 3.6E-05 48.7 23.3 174 565-748 77-274 (307)
362 smart00320 WD40 WD40 repeats. 95.9 0.015 3.3E-07 40.9 4.9 36 546-581 4-40 (40)
363 COG0823 TolB Periplasmic compo 95.9 0.22 4.8E-06 58.2 16.8 155 594-760 192-359 (425)
364 KOG4640 Anaphase-promoting com 95.8 0.037 7.9E-07 64.8 9.7 95 594-696 20-115 (665)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.4 7.7 0.00017 46.9 27.9 54 618-671 272-338 (527)
366 PF04841 Vps16_N: Vps16, N-ter 95.4 3 6.5E-05 48.8 23.6 188 537-742 63-272 (410)
367 KOG1897 Damage-specific DNA bi 95.3 6 0.00013 49.4 25.9 159 592-760 446-614 (1096)
368 PF14727 PHTB1_N: PTHB1 N-term 95.1 5 0.00011 46.7 23.6 188 566-760 146-361 (418)
369 PF14583 Pectate_lyase22: Olig 95.0 8.7 0.00019 43.9 26.4 173 575-759 168-381 (386)
370 KOG4441 Proteins containing BT 95.0 2.2 4.7E-05 52.1 21.5 191 558-760 326-547 (571)
371 COG3204 Uncharacterized protei 94.9 3.5 7.6E-05 44.9 19.9 167 551-718 82-264 (316)
372 KOG2444 WD40 repeat protein [G 94.5 0.063 1.4E-06 55.9 5.6 143 609-760 32-178 (238)
373 COG3386 Gluconolactonase [Carb 94.3 7.5 0.00016 43.5 22.1 186 561-759 31-243 (307)
374 COG3204 Uncharacterized protei 94.3 2.9 6.4E-05 45.5 17.7 181 577-760 65-264 (316)
375 TIGR03074 PQQ_membr_DH membran 94.0 10 0.00022 47.8 24.5 110 565-674 194-352 (764)
376 PF04053 Coatomer_WDAD: Coatom 94.0 2.9 6.3E-05 49.2 18.8 132 565-715 117-260 (443)
377 PRK13616 lipoprotein LpqB; Pro 93.8 1.8 3.9E-05 52.9 17.3 161 593-759 348-525 (591)
378 PHA02713 hypothetical protein; 93.8 1.4 3.1E-05 53.6 16.5 187 563-761 302-535 (557)
379 PRK13616 lipoprotein LpqB; Pro 93.8 3.2 6.9E-05 50.8 19.3 184 555-751 350-560 (591)
380 PF00930 DPPIV_N: Dipeptidyl p 93.7 2.1 4.5E-05 49.0 16.8 81 574-656 22-120 (353)
381 PF00780 CNH: CNH domain; Int 93.7 2.7 5.9E-05 45.9 17.2 151 606-761 6-167 (275)
382 PF06433 Me-amine-dh_H: Methyl 93.6 16 0.00034 41.2 23.2 146 565-720 147-323 (342)
383 KOG2079 Vacuolar assembly/sort 93.4 1.4 3.1E-05 55.0 15.1 99 565-666 99-203 (1206)
384 PF05694 SBP56: 56kDa selenium 93.4 8.6 0.00019 44.5 20.2 192 566-764 88-347 (461)
385 KOG2395 Protein involved in va 93.2 0.95 2.1E-05 52.4 12.4 138 566-715 347-498 (644)
386 PF15390 DUF4613: Domain of un 93.1 4 8.6E-05 48.3 17.3 151 554-717 19-186 (671)
387 KOG3630 Nuclear pore complex, 92.8 0.68 1.5E-05 57.9 11.2 123 638-760 102-229 (1405)
388 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.8 12 0.00027 45.2 22.1 196 565-764 69-338 (527)
389 PF05096 Glu_cyclase_2: Glutam 92.8 17 0.00037 39.5 23.5 184 556-748 46-249 (264)
390 PF05694 SBP56: 56kDa selenium 92.6 9.1 0.0002 44.3 19.0 183 565-748 141-392 (461)
391 PF14870 PSII_BNR: Photosynthe 92.5 16 0.00035 40.7 20.8 156 592-756 142-301 (302)
392 PF14655 RAB3GAP2_N: Rab3 GTPa 92.3 27 0.00059 40.7 23.4 39 566-604 80-118 (415)
393 KOG4441 Proteins containing BT 92.2 3.6 7.8E-05 50.2 16.7 184 565-760 285-500 (571)
394 PF12894 Apc4_WD40: Anaphase-p 92.1 0.52 1.1E-05 37.0 6.0 32 728-759 10-41 (47)
395 KOG4499 Ca2+-binding protein R 92.0 14 0.0003 39.1 17.9 186 565-762 27-244 (310)
396 COG3490 Uncharacterized protei 92.0 8.3 0.00018 41.9 16.6 199 559-763 72-314 (366)
397 PHA03098 kelch-like protein; P 91.5 4.9 0.00011 48.6 16.9 183 564-760 294-512 (534)
398 PF12894 Apc4_WD40: Anaphase-p 91.4 0.49 1.1E-05 37.2 5.2 33 451-484 11-43 (47)
399 KOG3630 Nuclear pore complex, 91.4 2 4.4E-05 54.0 12.9 128 566-698 115-255 (1405)
400 PF14655 RAB3GAP2_N: Rab3 GTPa 91.4 33 0.00072 40.0 22.4 87 560-646 7-118 (415)
401 PF14727 PHTB1_N: PTHB1 N-term 91.3 9.3 0.0002 44.5 17.8 151 606-760 36-205 (418)
402 PF07995 GSDH: Glucose / Sorbo 91.2 31 0.00067 39.1 26.5 69 686-754 252-330 (331)
403 PF02897 Peptidase_S9_N: Proly 91.0 36 0.00079 39.6 25.4 111 557-668 126-262 (414)
404 KOG2444 WD40 repeat protein [G 91.0 0.56 1.2E-05 49.1 6.7 103 565-667 70-178 (238)
405 KOG2079 Vacuolar assembly/sort 90.7 1 2.2E-05 56.3 9.5 102 606-715 98-201 (1206)
406 PF15390 DUF4613: Domain of un 90.6 6.5 0.00014 46.6 15.4 156 593-760 18-187 (671)
407 COG5167 VID27 Protein involved 90.1 4.1 8.9E-05 47.2 12.9 147 606-760 478-633 (776)
408 PF14870 PSII_BNR: Photosynthe 90.0 36 0.00079 38.0 22.4 187 557-760 64-261 (302)
409 TIGR02604 Piru_Ver_Nterm putat 89.4 12 0.00026 43.1 16.7 149 595-748 14-202 (367)
410 COG3490 Uncharacterized protei 89.2 6 0.00013 42.9 12.7 69 593-664 278-346 (366)
411 PF14761 HPS3_N: Hermansky-Pud 88.7 17 0.00037 38.1 15.4 147 608-759 29-214 (215)
412 PF10647 Gmad1: Lipoprotein Lp 88.2 23 0.0005 38.4 17.1 149 596-752 25-188 (253)
413 PF10168 Nup88: Nuclear pore c 88.2 11 0.00023 47.3 16.0 81 637-718 85-180 (717)
414 COG5276 Uncharacterized conser 87.6 48 0.0011 36.4 20.3 160 588-762 80-244 (370)
415 PF14781 BBS2_N: Ciliary BBSom 87.1 17 0.00036 35.3 13.0 109 561-670 5-129 (136)
416 PF12234 Rav1p_C: RAVE protein 86.8 17 0.00036 44.5 16.1 113 637-759 30-156 (631)
417 KOG1916 Nuclear protein, conta 86.7 0.063 1.4E-06 64.9 -4.1 160 558-718 184-375 (1283)
418 PHA02713 hypothetical protein; 86.6 21 0.00045 43.6 17.2 96 575-672 272-381 (557)
419 PHA02790 Kelch-like protein; P 86.5 21 0.00045 42.7 16.9 181 565-760 272-471 (480)
420 PF03022 MRJP: Major royal jel 86.3 44 0.00095 37.1 18.2 171 576-748 35-254 (287)
421 KOG2280 Vacuolar assembly/sort 86.3 18 0.00039 44.2 15.5 197 555-763 44-250 (829)
422 PF13449 Phytase-like: Esteras 86.0 41 0.00088 38.0 18.2 150 594-746 19-231 (326)
423 PF08728 CRT10: CRT10; InterP 85.0 39 0.00084 41.9 18.0 108 557-665 103-245 (717)
424 PHA03098 kelch-like protein; P 84.3 48 0.001 40.1 18.9 107 564-672 342-470 (534)
425 PF10647 Gmad1: Lipoprotein Lp 83.6 71 0.0015 34.6 20.5 148 556-707 25-185 (253)
426 TIGR02604 Piru_Ver_Nterm putat 82.9 24 0.00052 40.5 14.8 98 556-655 73-202 (367)
427 COG3823 Glutamine cyclotransfe 82.7 56 0.0012 34.2 15.2 137 555-705 101-247 (262)
428 TIGR03074 PQQ_membr_DH membran 82.3 1.5E+02 0.0033 37.6 24.4 68 565-632 260-351 (764)
429 KOG4460 Nuclear pore complex, 82.3 23 0.0005 41.5 13.6 86 638-723 105-204 (741)
430 PF10313 DUF2415: Uncharacteri 81.7 3.7 8.1E-05 31.5 4.9 31 452-482 1-34 (43)
431 PF12234 Rav1p_C: RAVE protein 81.2 41 0.00089 41.2 16.1 103 607-715 41-154 (631)
432 PF07569 Hira: TUP1-like enhan 80.9 12 0.00025 39.9 10.3 71 595-669 13-98 (219)
433 PRK13684 Ycf48-like protein; P 80.8 1.1E+02 0.0023 34.8 20.6 155 594-758 172-330 (334)
434 PLN02153 epithiospecifier prot 80.7 1.1E+02 0.0023 34.7 21.3 105 564-671 32-172 (341)
435 PRK10115 protease 2; Provision 80.5 1.7E+02 0.0036 36.8 31.7 190 559-761 176-396 (686)
436 PF07995 GSDH: Glucose / Sorbo 80.2 31 0.00068 39.0 14.2 111 638-752 3-136 (331)
437 PF10214 Rrn6: RNA polymerase 79.9 83 0.0018 40.0 19.3 128 634-763 77-236 (765)
438 PF02333 Phytase: Phytase; In 79.8 1.2E+02 0.0027 34.9 19.0 150 606-759 67-237 (381)
439 PF14781 BBS2_N: Ciliary BBSom 78.5 41 0.00088 32.7 12.0 106 600-716 4-124 (136)
440 PF08728 CRT10: CRT10; InterP 78.5 47 0.001 41.2 15.5 106 606-716 113-245 (717)
441 PLN00033 photosystem II stabil 78.0 1.4E+02 0.0031 34.7 23.6 150 598-756 242-396 (398)
442 KOG1916 Nuclear protein, conta 77.6 1.4 3.1E-05 53.9 2.4 116 549-666 127-265 (1283)
443 PF14761 HPS3_N: Hermansky-Pud 76.7 1.1E+02 0.0023 32.4 16.6 109 559-669 22-166 (215)
444 PF07569 Hira: TUP1-like enhan 76.6 11 0.00023 40.1 8.5 70 644-716 18-94 (219)
445 COG5167 VID27 Protein involved 75.9 30 0.00065 40.5 11.9 138 567-715 482-630 (776)
446 KOG2247 WD40 repeat-containing 75.8 0.42 9E-06 54.8 -2.5 146 598-755 38-184 (615)
447 TIGR03606 non_repeat_PQQ dehyd 75.5 85 0.0018 37.2 16.1 114 636-750 29-166 (454)
448 PF10168 Nup88: Nuclear pore c 75.1 1.3E+02 0.0028 37.9 18.4 35 552-586 144-182 (717)
449 KOG1898 Splicing factor 3b, su 75.0 1.8E+02 0.0039 37.4 18.9 172 576-760 854-1049(1205)
450 PLN02193 nitrile-specifier pro 74.6 1.9E+02 0.0042 34.4 20.9 146 565-719 176-353 (470)
451 PF10313 DUF2415: Uncharacteri 74.4 8.8 0.00019 29.5 5.0 32 595-626 1-34 (43)
452 smart00036 CNH Domain found in 73.8 1.5E+02 0.0034 33.0 25.0 203 553-763 41-274 (302)
453 PHA02790 Kelch-like protein; P 70.4 2.4E+02 0.0052 33.7 19.8 102 565-671 319-428 (480)
454 TIGR03548 mutarot_permut cycli 70.3 1.9E+02 0.004 32.4 17.2 106 564-671 72-199 (323)
455 TIGR03118 PEPCTERM_chp_1 conse 69.7 1.9E+02 0.0041 32.2 24.1 206 556-762 24-282 (336)
456 PRK13684 Ycf48-like protein; P 69.3 2E+02 0.0044 32.5 18.6 151 554-715 172-329 (334)
457 PLN00033 photosystem II stabil 69.2 2.3E+02 0.005 33.0 18.5 146 557-714 241-396 (398)
458 TIGR03547 muta_rot_YjhT mutatr 68.4 2.1E+02 0.0046 32.3 18.2 41 617-657 168-210 (346)
459 KOG1983 Tomosyn and related SN 67.6 63 0.0014 42.2 13.9 26 738-763 243-268 (993)
460 TIGR03606 non_repeat_PQQ dehyd 65.8 2.9E+02 0.0062 32.8 18.0 54 594-648 29-90 (454)
461 PRK05560 DNA gyrase subunit A; 65.1 4E+02 0.0086 34.2 27.3 195 564-760 547-773 (805)
462 KOG2247 WD40 repeat-containing 62.8 1 2.2E-05 51.8 -3.0 140 559-710 39-181 (615)
463 PLN02153 epithiospecifier prot 62.6 2.7E+02 0.0058 31.4 20.1 105 565-672 86-231 (341)
464 TIGR03032 conserved hypothetic 61.9 1.1E+02 0.0025 34.1 12.4 104 579-697 189-315 (335)
465 smart00036 CNH Domain found in 60.3 2.6E+02 0.0056 31.2 15.6 60 608-669 14-76 (302)
466 KOG1897 Damage-specific DNA bi 58.7 5.1E+02 0.011 33.4 33.2 159 550-715 484-657 (1096)
467 KOG2280 Vacuolar assembly/sort 58.3 2.5E+02 0.0054 34.9 15.3 47 538-584 67-113 (829)
468 KOG2377 Uncharacterized conser 58.3 1.8E+02 0.004 33.9 13.4 106 635-747 65-171 (657)
469 TIGR01063 gyrA DNA gyrase, A s 58.1 5.1E+02 0.011 33.2 27.2 196 564-760 545-770 (800)
470 PRK14131 N-acetylneuraminic ac 57.9 3.4E+02 0.0074 31.1 17.4 38 618-656 190-230 (376)
471 PF12768 Rax2: Cortical protei 57.1 1.7E+02 0.0037 32.4 13.0 93 574-667 15-122 (281)
472 PF08801 Nucleoporin_N: Nup133 55.2 2.1E+02 0.0045 33.4 14.5 31 730-760 190-220 (422)
473 PF13449 Phytase-like: Esteras 55.1 3.5E+02 0.0076 30.4 18.0 148 554-704 19-231 (326)
474 PF10214 Rrn6: RNA polymerase 54.9 5.6E+02 0.012 32.7 27.8 159 552-718 77-277 (765)
475 PF07250 Glyoxal_oxid_N: Glyox 54.8 1E+02 0.0023 33.2 10.7 87 578-665 49-147 (243)
476 KOG1983 Tomosyn and related SN 54.5 5.6E+02 0.012 33.8 19.0 36 452-487 36-71 (993)
477 KOG1900 Nuclear pore complex, 53.2 1E+02 0.0023 40.3 11.7 146 571-718 95-273 (1311)
478 PF02333 Phytase: Phytase; In 53.2 4.2E+02 0.009 30.7 21.4 141 575-717 127-290 (381)
479 PLN02193 nitrile-specifier pro 53.1 4.6E+02 0.01 31.2 18.6 104 565-672 229-357 (470)
480 KOG4499 Ca2+-binding protein R 52.7 3.2E+02 0.007 29.3 20.2 143 594-739 108-263 (310)
481 KOG1900 Nuclear pore complex, 51.2 1E+02 0.0022 40.4 11.2 144 615-760 97-273 (1311)
482 PF11715 Nup160: Nucleoporin N 50.6 37 0.0008 41.3 7.4 33 731-763 216-252 (547)
483 COG4257 Vgb Streptogramin lyas 50.3 3.8E+02 0.0083 29.5 16.7 179 558-757 65-260 (353)
484 KOG3616 Selective LIM binding 50.1 75 0.0016 38.8 9.1 72 592-666 12-83 (1636)
485 PF12768 Rax2: Cortical protei 50.0 2.8E+02 0.0061 30.7 13.3 100 617-720 16-126 (281)
486 PF10395 Utp8: Utp8 family; I 49.6 5.4E+02 0.012 32.0 16.5 154 554-716 129-304 (670)
487 PF08149 BING4CT: BING4CT (NUC 48.8 6.6 0.00014 34.3 0.4 38 846-883 10-47 (80)
488 PF11715 Nup160: Nucleoporin N 48.5 28 0.00062 42.2 5.9 39 452-490 215-257 (547)
489 KOG1896 mRNA cleavage and poly 46.9 3.3E+02 0.0072 35.7 14.4 139 566-715 1047-1211(1366)
490 COG4247 Phy 3-phytase (myo-ino 45.2 4.4E+02 0.0095 28.6 14.8 156 597-760 58-233 (364)
491 COG3823 Glutamine cyclotransfe 44.6 4.1E+02 0.0088 28.1 13.9 114 559-674 50-166 (262)
492 PF07676 PD40: WD40-like Beta 43.5 84 0.0018 22.9 5.7 32 447-478 4-38 (39)
493 PF08801 Nucleoporin_N: Nup133 40.7 3.4E+02 0.0073 31.7 13.2 31 687-718 190-220 (422)
494 COG1520 FOG: WD40-like repeat 40.5 6E+02 0.013 28.9 20.5 191 565-764 68-273 (370)
495 KOG4460 Nuclear pore complex, 37.7 3.1E+02 0.0068 32.7 11.4 75 688-763 105-202 (741)
496 PF11635 Med16: Mediator compl 36.7 1E+03 0.022 30.4 21.1 68 686-754 259-345 (753)
497 TIGR00664 DNA_III_psi DNA poly 36.6 16 0.00035 35.4 0.9 21 107-127 2-26 (133)
498 TIGR02276 beta_rpt_yvtn 40-res 36.2 1.1E+02 0.0023 22.4 5.4 39 606-644 2-41 (42)
499 PF12657 TFIIIC_delta: Transcr 36.0 1.5E+02 0.0033 29.9 8.1 72 641-714 9-118 (173)
500 COG4590 ABC-type uncharacteriz 35.6 1.6E+02 0.0035 34.2 8.6 162 593-762 219-389 (733)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-71 Score=635.27 Aligned_cols=589 Identities=47% Similarity=0.750 Sum_probs=424.1
Q ss_pred CCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccc--cccCC-CCccccccccccc--cc
Q 002086 297 LDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVN--RINDS-AGKFSANSYLSKS--LR 371 (969)
Q Consensus 297 ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~--~~~t~-s~d~~v~~~~~~~--~~ 371 (969)
+++|.++++.+...++++.++-|++++.++++++|+...|.+..|..++.+++.. ...+. .++. .+. ..
T Consensus 106 ~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~------s~s~~~~ 179 (712)
T KOG0283|consen 106 LDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGESSRVKELGDRENADLDEMLTKYNDDV------SGSVLLR 179 (712)
T ss_pred ecccceeeEeeccCccccccccCCCcccccccccccCCcCcccchhhhhhhcccccchhhccccccc------ccccccc
Confidence 5899999999999999999999999999999999999999999999999655443 11111 1111 111 11
Q ss_pred ccccccccccceeeeeEEEeeecCC--ccc----cCCCCcccchHHHHH---HhhccccCcceEEEccCCCcccccccce
Q 002086 372 MSKRRGAALLKNIKGVAHSMSVKGD--KEC----INPNPLLGDQREQKE---QKQNKNVSNHWVKVRQSGKSYKDLSALH 442 (969)
Q Consensus 372 ~~k~~~~~~l~~v~gv~~s~~~~gd--~~~----~~~~~l~~~~~~~~~---~~~~~~~~~~~v~v~~~~~~l~dl~~~~ 442 (969)
..+.+...+++.++.++... .+. ... ............... ........+.++++.+.++..++|.++.
T Consensus 180 ~~~r~~~~~l~~~k~~~~~~--s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~ 257 (712)
T KOG0283|consen 180 KSKRYGKRWLKSLKVVAHSL--SSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALT 257 (712)
T ss_pred hhhhhhhhhhhhcccccccc--ccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeE
Confidence 12222223455555444443 111 000 000000000000000 0001123448999999999999999999
Q ss_pred eeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
..++++ +|.++|++|+||+||+||||||+|+.|+||.+...+......+...+++..............-. .......
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~-~~~~~~~ 336 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE-EKISSRT 336 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc-ccccccc
Confidence 999999 99999999999999999999999999999999876665444443333332222211100000000 0000000
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~ 601 (969)
.............++..++.+..+|++.|.||.+.|.+|.|+.+++|++++.|+||+||++...+|+++|.|.+.|+||+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 01111122233778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
|+|.|++||++|+.||+|+||++...+++.+......|++++|.|+|++.++|+.+|.+++|++...++....++.....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888777
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC--CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG--LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~--~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
++.....|++++|.|..+..+++++.|..|||||+ ..++++|+++......+...|+.||++|+++++|..|+||++.
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 66666699999999988888999999999999999 7789999999998888999999999999999999999999997
Q ss_pred CCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCccc-ccCCCCCCccccCCCCcc
Q 002086 760 EHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSA-TSSPTKEGSPAGHSRRLL 838 (969)
Q Consensus 760 t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~-~~SP~~~~i~~~~~~~~L 838 (969)
...... ........+..++|.|..++++++|.+....... ....+... ...|..++..+.
T Consensus 577 ~~~~~~-~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~n~s------------s~~p~~~~~~~~~~~~~~~s~------ 637 (712)
T KOG0283|consen 577 SFNSEA-SHKKTKSIRSYEHFSSVDVSVAIPWPGFHAHNPS------------SNLPPLIKAALRPVNEFKLSS------ 637 (712)
T ss_pred CCcccc-cccccccccccccccccccccccccccccccccc------------ccCCCCcccccCcccccccCC------
Confidence 653322 2234556778899999999999999999765530 00000000 011111111110
Q ss_pred ccCCCCCCccccCCCCCCCCccccccCCCCCCccccCCCccccCCCCCCcccCCCCCCCCCCCCCCCcccccccCCCCCC
Q 002086 839 PPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSNSSSIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSS 918 (969)
Q Consensus 839 ~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s~~~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (969)
+..+-.-....++|++.+.... .++ . ++
T Consensus 638 ---~~~~~~~~~s~t~~e~~~~~s~----------------------~~~-----~----------------------~~ 665 (712)
T KOG0283|consen 638 ---PMRSLNSRGSATWPEEKLLDSP----------------------GAS-----A----------------------SS 665 (712)
T ss_pred ---ccccccccccccCccccccccc----------------------Ccc-----c----------------------cc
Confidence 1111111112256666543221 111 0 12
Q ss_pred ccccccccccCCCCCCccccceeeEEEEEeecCCEEEEEEeeCCcccc
Q 002086 919 FTNWSSWFDVGSHSSHTVQATAWGLVIVTATLGGEIKTYQNFGIPRRL 966 (969)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~g~~~vt~g~dg~~r~~~~~~~~~~~ 966 (969)
+..+ +++.+..+..+..++++||+|||||+|||.||+|||||||+++
T Consensus 666 ~~~~-~~~~S~~~~~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 666 RSSI-KFLMSGCQRSSSSSPHAWGMVIVTSTLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred cccc-ccccCCCccccccccCCCcceeeeccccceEEEEEecCCCCCC
Confidence 2222 4555554555566699999999999999999999999999985
No 2
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.4e-40 Score=357.64 Aligned_cols=399 Identities=18% Similarity=0.256 Sum_probs=309.3
Q ss_pred CCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeee-cccccccccCCCCccccccccccccccccccc
Q 002086 299 TGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELM-RRENVNRINDSAGKFSANSYLSKSLRMSKRRG 377 (969)
Q Consensus 299 ~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~-~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~ 377 (969)
+.+..+|.|+.+ ++.+++-|++|..+ ..+.||++.|++|+ ++.+|++++|+++|+++++|++++|||+....
T Consensus 115 s~RI~avGEGre--rfg~~F~~DSG~Sv-----Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 115 SKRIAAVGEGRE--RFGHVFLWDSGNSV-----GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred CcEEEEEecCcc--ceeEEEEecCCCcc-----ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc
Confidence 333344455444 46677777777763 56699999999999 78999999999999999999999999998754
Q ss_pred ccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEE
Q 002086 378 AALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTI 457 (969)
Q Consensus 378 ~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l 457 (969)
.|.+++++++|++ .|.... + ...++++++|++++++++.++.. -.+|.+.|++|
T Consensus 188 -~HskFV~~VRysP--DG~~Fa--t---------------~gsDgki~iyDGktge~vg~l~~------~~aHkGsIfal 241 (603)
T KOG0318|consen 188 -EHSKFVNCVRYSP--DGSRFA--T---------------AGSDGKIYIYDGKTGEKVGELED------SDAHKGSIFAL 241 (603)
T ss_pred -ccccceeeEEECC--CCCeEE--E---------------ecCCccEEEEcCCCccEEEEecC------CCCccccEEEE
Confidence 5788999999888 444433 1 45788999999988887766653 34899999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc----CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 458 KFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT----PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 458 ~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~----~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
+|+||++.|+|++.|.++||||+.+.+++.++..... .+..+.........++.|.......
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~-------------- 307 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP-------------- 307 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc--------------
Confidence 9999999999999999999999999998886543222 0000000011111222222221111
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYF 610 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L 610 (969)
....++..+.||...|+++..++ +.+|++|+.||.|.-||..++..-+.+ .|...|.+++-+ ....+
T Consensus 308 --------~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~--~~~~~ 377 (603)
T KOG0318|consen 308 --------SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS--ESGEL 377 (603)
T ss_pred --------cCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec--CCCcE
Confidence 23447778999999999999999 899999999999999999999988775 799999999987 35788
Q ss_pred EEEECCCeEEEEeCCCce------------E--------------------EEE--------ecCCCCEEEEEEccCCCE
Q 002086 611 ISGSLDAKVRIWSISDRL------------V--------------------VDW--------TDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~~------------~--------------------~~~--------~~~~~~V~sv~fspdg~~ 650 (969)
++++.|.++++.++..+. + +-+ ........+++++|++..
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 899999999999773310 0 001 112234688999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee-cCC
Q 002086 651 ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF-RNT 729 (969)
Q Consensus 651 Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~-~~~ 729 (969)
+++|+.||.|+||.+....+.... ....|..+|++++|+|++ .+|+++...+.+.+||........... -|.
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee~------~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~~~~w~FHt 530 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEEA------KLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREVKTNRWAFHT 530 (603)
T ss_pred EEEecccceEEEEEecCCccccee------eeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCceecceeeeee
Confidence 999999999999999987653322 226789999999999999 899999999999999976544333333 378
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 730 SSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..|.+++|+|+..+||||+.|-+|.||+++.+
T Consensus 531 akI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 531 AKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 88999999999999999999999999999986
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=321.00 Aligned_cols=328 Identities=17% Similarity=0.281 Sum_probs=277.6
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
..+.||...|.++.|..++..+++|++|.++.+|+ +......+.++.+..-+.+++.+||...++++.
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD-----~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~------- 176 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWD-----LDTETPLFTCKGHKNWVLCVAWSPDGKKIASGS------- 176 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeec-----cCCCCcceeecCCccEEEEEEECCCcchhhccc-------
Confidence 45689999999999988999999999999998775 444444455666666777777788888877652
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeC-----CCCEEEEEeCCCcEEEEecccceEE
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSL-----DARFLASAGEDRVIHVWEVQECEVM 486 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSp-----Dg~~LaTgs~DgtVrIWDl~tg~~l 486 (969)
.++.+.++..+++. +....|.+|...|++|+|.| ..++||+++.||.|+|||+..+.++
T Consensus 177 --------~dg~I~lwdpktg~--------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 177 --------KDGSIRLWDPKTGQ--------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred --------cCCeEEEecCCCCC--------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE
Confidence 23334444433443 34567999999999999986 6779999999999999999876665
Q ss_pred EeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCc
Q 002086 487 SMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSH 566 (969)
Q Consensus 487 ~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~ 566 (969)
. .+.||+.+|+|+.|--..
T Consensus 241 ~-------------------------------------------------------------~lsgHT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 241 R-------------------------------------------------------------TLSGHTASVTCVRWGGEG 259 (480)
T ss_pred E-------------------------------------------------------------EeccCccceEEEEEcCCc
Confidence 4 677899999999998889
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEe-----------c------------------------CCCCEE
Q 002086 567 LLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFN-----------P------------------------MDDDYF 610 (969)
Q Consensus 567 ~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fs-----------p------------------------~~~~~L 610 (969)
+|++||.|++|++|+...|.+...+ +|...|+.|+.+ | ..+..+
T Consensus 260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 9999999999999999999988877 899999999877 2 123459
Q ss_pred EEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 611 ISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
++|+.|.++.+|+....+ +....+|..-|+.+.|+||++++|+++-|..|++||.++++.+.. ..+|...
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las--------fRGHv~~ 411 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS--------FRGHVAA 411 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh--------hhhccce
Confidence 999999999999986433 446778889999999999999999999999999999999986544 3889999
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
|+.++|+.|. .+|++|+.|.++++|++++.........|...|.++.|+|||+.+++|+.|..+++|.
T Consensus 412 VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 412 VYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eEEEEeccCc-cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999987 8999999999999999988888788888899999999999999999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-36 Score=317.07 Aligned_cols=335 Identities=20% Similarity=0.298 Sum_probs=272.0
Q ss_pred cceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCccccccc
Q 002086 423 NHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCN 502 (969)
Q Consensus 423 ~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~ 502 (969)
.....+.+.....+.-.-.++...+.||.++|.|+.|+|+|.+||||+.|.++|+||+.+.
T Consensus 87 ~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te------------------- 147 (480)
T KOG0271|consen 87 DVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE------------------- 147 (480)
T ss_pred heeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-------------------
Confidence 3333344444433333445677889999999999999999999999999999999999753
Q ss_pred CCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEE
Q 002086 503 SSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWD 581 (969)
Q Consensus 503 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWD 581 (969)
.|..+.++|...|.|++|+| +..|++|+.||+|++||
T Consensus 148 ------------------------------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 148 ------------------------------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred ------------------------------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34457889999999999999 89999999999999999
Q ss_pred CCCCcEEEE-e-ecCCCeEEEEEecC----CCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEE
Q 002086 582 METKSCLKL-F-AHNDYVTCIQFNPM----DDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 582 l~t~~~i~~-~-~h~~~V~sv~fsp~----~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasg 654 (969)
..+++++-. + +|...|++++|.|. ...+|++++.||.|+|||+..+.++ .+.+|..+|+|+.|--+| ++++|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEec
Confidence 999987743 3 89999999999873 3468999999999999999988654 567788999999998664 89999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc-----------CC------------------------CC
Q 002086 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS-----------PS------------------------NP 699 (969)
Q Consensus 655 s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs-----------pd------------------------~~ 699 (969)
+.|++|++|+...+.+.. ..++|...|+.++.+ |. ++
T Consensus 265 S~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred CCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 999999999999887543 337888888888876 22 23
Q ss_pred ceEEEEeCCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCC
Q 002086 700 SEVLVTSADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHE 778 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~ 778 (969)
..+++|+.|.++.+|+..... ...+...|..-|+.+.||||++|+|+++-|..|++|+-.+++.+.+.+ .+..
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR------GHv~ 410 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR------GHVA 410 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh------hccc
Confidence 469999999999999966543 334456677889999999999999999999999999999966555433 2211
Q ss_pred ceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCC
Q 002086 779 HFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEE 858 (969)
Q Consensus 779 ~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~ 858 (969)
.+. - .+.|.+..++.+.+.|..|..|...+.++..-|.+|..+
T Consensus 411 ~VY------q-------------------------------vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 411 AVY------Q-------------------------------VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred eeE------E-------------------------------EEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce
Confidence 111 1 123556667889999999999999999999999999999
Q ss_pred ccccccCCCCCC
Q 002086 859 LSLISHDPGISE 870 (969)
Q Consensus 859 l~~is~hP~~~~ 870 (969)
+.++-|.|...-
T Consensus 454 Vf~vDwspDG~r 465 (480)
T KOG0271|consen 454 VFAVDWSPDGQR 465 (480)
T ss_pred EEEEEecCCCce
Confidence 999999999553
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.9e-33 Score=284.35 Aligned_cols=288 Identities=20% Similarity=0.323 Sum_probs=242.2
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
..++|+||.+.|+++.|++|.++|++++.||.+.|||.-+...+..+......+-...+.+.....+..|-.+.
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~------ 120 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK------ 120 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCce------
Confidence 44789999999999999999999999999999999999887776665555555555555554443333322111
Q ss_pred cCCCCCCCCcccccceeeecC-------CCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 523 KKGKHSSPDYVHVPETVFSLS-------EKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~-------~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
..+|.+. .+....+.+|++-+.|+.|.++..|+|+|.|.++.+||+++++.+..| +|.
T Consensus 121 --------------Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 121 --------------CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHT 186 (343)
T ss_pred --------------eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCc
Confidence 1111111 123457899999999999999999999999999999999999999998 899
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
+.|.++.+.|.+++.|++|+-|+..++||++.+..++ +.+|...|++++|.|+|.-|++|+.|+++++||++..+.+..
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV 266 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee
Confidence 9999999999889999999999999999999987664 667888999999999999999999999999999999876655
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
.. ......+|++++|+..| ++|++|..|.++.+||..+.........|...|.++..+|||.-|+||+.|.+|
T Consensus 267 ys------~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 267 YS------HDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred ec------cCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 43 24456789999999988 899999999999999988777777777888899999999999999999999999
Q ss_pred EEEE
Q 002086 754 YVWK 757 (969)
Q Consensus 754 ~IWd 757 (969)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=308.12 Aligned_cols=289 Identities=22% Similarity=0.379 Sum_probs=248.0
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCC-CCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSD-KASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~-~~~~~~g~~~~~~~ 519 (969)
+.+...--|-+.+|..+.|+.|++.|||||.+|.++||+..++..+..+.+|...+....+.+.. ......+..
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~----- 239 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASA----- 239 (459)
T ss_pred hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeecc-----
Confidence 33333344778999999999999999999999999999999999999999998888777777663 211111111
Q ss_pred ccccCCCCCCCCcccccceeeecCC-CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSE-KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~-k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
.....+|..+. .++..+.||...|..++|+| |++|+|++.|.+-++||+.++..+... +|...
T Consensus 240 --------------Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 240 --------------DGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred --------------CCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence 11223444444 78889999999999999999 999999999999999999999877655 99999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
|.+++|++ +|.++++|+.|..-+|||++++..+ .+.+|..+|..|+|+|+|..||+|+.|++++|||++.......
T Consensus 306 v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~-- 382 (459)
T KOG0272|consen 306 VFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT-- 382 (459)
T ss_pred cceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee--
Confidence 99999999 9999999999999999999998765 4566789999999999999999999999999999998776433
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
..+|..-|+.+.|+|..+.+|++++.|++++||........-....|...|.++.+++|+.+|+|++.|.+|++
T Consensus 383 ------ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 383 ------IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred ------cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 27899999999999977799999999999999998887776667778889999999999999999999999999
Q ss_pred EE
Q 002086 756 WK 757 (969)
Q Consensus 756 Wd 757 (969)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-33 Score=315.27 Aligned_cols=434 Identities=19% Similarity=0.246 Sum_probs=306.1
Q ss_pred cEEEEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccC-CCcceeeeecccccccccCCCCcccccccccc
Q 002086 290 AFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVG-HSPVVKELMRRENVNRINDSAGKFSANSYLSK 368 (969)
Q Consensus 290 ~~~~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~G-Hs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~ 368 (969)
..+.-.+++-.+++++..+ .++.+++|++.+|+. ++...+ |+.+|.-+++...+..+++|+-|..+.
T Consensus 63 d~ita~~l~~d~~~L~~a~--rs~llrv~~L~tgk~-----irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~----- 130 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTAS--RSQLLRVWSLPTGKL-----IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVK----- 130 (775)
T ss_pred hhhheeeecCCccEEEEee--ccceEEEEEcccchH-----hHhHhhccCCCeEEEEEcCCCceEEeccccceEE-----
Confidence 3333344443344444332 368899999999987 466666 999999999877778899999999764
Q ss_pred cccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccc-eeeeEe
Q 002086 369 SLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSAL-HLCQEI 447 (969)
Q Consensus 369 ~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~-~l~~~L 447 (969)
+|++....+.+.++++.|++.++.|+++... .++.. +....-+++| ++... .++.++
T Consensus 131 VWdi~~~~~th~fkG~gGvVssl~F~~~~~~----~lL~s-----------g~~D~~v~vw-------nl~~~~tcl~~~ 188 (775)
T KOG0319|consen 131 VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR----WLLAS-----------GATDGTVRVW-------NLNDKRTCLHTM 188 (775)
T ss_pred EEEeeCCEEEEEecCCCceEEEEEeCCccch----hheee-----------cCCCceEEEE-------EcccCchHHHHH
Confidence 5567888889999999999999999988765 22222 2222233333 33211 157889
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc---Cc-----------ccccccCCCCCccCC--
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT---PI-----------HPSLCNSSDKASSLD-- 511 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~---~v-----------~~~~~~~~~~~~~~~-- 511 (969)
+.|...|++++|++|+.-++++|.|..|.|||+.+.+.+........ .+ .....+.......++
T Consensus 189 ~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e 268 (775)
T KOG0319|consen 189 ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE 268 (775)
T ss_pred HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc
Confidence 99999999999999999999999999999999876554432211000 00 000000000000000
Q ss_pred --------------------------------CCCCCCCc--cccc-----CCCC---CCCCccc------------ccc
Q 002086 512 --------------------------------GSSPNPPP--EKKK-----KGKH---SSPDYVH------------VPE 537 (969)
Q Consensus 512 --------------------------------g~~~~~~~--~~~~-----~~~~---~~~~~~~------------~~~ 537 (969)
........ .... .+.. ..-.+.. ...
T Consensus 269 s~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 269 SGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred cchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCce
Confidence 00000000 0000 0000 0000000 011
Q ss_pred eeeecCCCceeEeccCCCCEEEEE-ecCCcEEEEEeCCCcEEEEECCCCcEEEE-----eecCCCeEEEEEecCCCCEEE
Q 002086 538 TVFSLSEKPFCSFIGHLDDVLDLS-WSRSHLLLSSSMDKTVRLWDMETKSCLKL-----FAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 538 ~v~~~~~k~~~~l~gH~~~I~~l~-fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~-----~~h~~~V~sv~fsp~~~~~L~ 611 (969)
+++...+..-..+.||+..|.++. |+.+.+|+||+.|++|++|.++.+..... .+|++.|.+++++.....+|+
T Consensus 349 r~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 349 RLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred EEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence 233334444456789999999999 55578999999999999999855543322 289999999999875667999
Q ss_pred EEECCCeEEEEeCCCce----EE------EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 612 SGSLDAKVRIWSISDRL----VV------DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~----~~------~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+++.|++|++|++...+ +. ....|...|++++++|+.+++++|+.|.+.+||+++.......
T Consensus 429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-------- 500 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-------- 500 (775)
T ss_pred EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE--------
Confidence 99999999999997621 11 2345778899999999999999999999999999996655433
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..+|...|.++.|+|.+ +.++++|.|++|+||.+.+..+.-...+|...|..+.|-.+|+.|++++.||.|+||++++.
T Consensus 501 LsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeCCccceEEEEecccc-ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 38999999999999977 89999999999999998876666555667888999999999999999999999999999996
Q ss_pred CccCC
Q 002086 762 RNAST 766 (969)
Q Consensus 762 ~~~~t 766 (969)
++..+
T Consensus 580 eC~~t 584 (775)
T KOG0319|consen 580 ECEMT 584 (775)
T ss_pred hhhhh
Confidence 65443
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-32 Score=275.56 Aligned_cols=302 Identities=19% Similarity=0.281 Sum_probs=249.1
Q ss_pred cceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.+.+..+|++|.+.|+.++..+. ...|++++.|.++.+|++.....
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~--------------------------------- 50 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI--------------------------------- 50 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc---------------------------------
Confidence 35567789999999999999987 45899999999999999874211
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
.-+.+++.+.||...|..+..++ +++.++++.|+++++||+.+++..+.| +|...
T Consensus 51 -----------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 51 -----------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD 107 (315)
T ss_pred -----------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc
Confidence 12456678999999999999998 899999999999999999999888777 99999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC--CCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL--HEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~--~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
|.+++|++ +..+|++|+.|.+|++|++........... .+.|+|+.|+|+ ..+|+.++.|++|++||+++.+...
T Consensus 108 Vlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 108 VLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred eEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 99999999 999999999999999999998887777665 688999999998 6789999999999999999887544
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
. ..+|.+.++.+.++||| .+.++|+.||.+.+||+.+... +....+...|.+++|+|+.-.|+.+. +..
T Consensus 187 ~--------~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~-lysl~a~~~v~sl~fspnrywL~~at-~~s 255 (315)
T KOG0279|consen 187 T--------FIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN-LYSLEAFDIVNSLCFSPNRYWLCAAT-ATS 255 (315)
T ss_pred c--------cccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce-eEeccCCCeEeeEEecCCceeEeecc-CCc
Confidence 3 37899999999999999 8999999999999999888776 44456778899999999865555544 566
Q ss_pred EEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc
Q 002086 753 VYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG 832 (969)
Q Consensus 753 I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~ 832 (969)
|+|||++++..+..-+.-..-. ..+.....-..+++|++|+.++++
T Consensus 256 IkIwdl~~~~~v~~l~~d~~g~----------------------------------s~~~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 256 IKIWDLESKAVVEELKLDGIGP----------------------------------SSKAGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred eEEEeccchhhhhhcccccccc----------------------------------ccccCCcEEEEEEEcCCCcEEEee
Confidence 9999999865554332111000 111222334456789999999999
Q ss_pred CCCCccccCCC
Q 002086 833 HSRRLLPPLPK 843 (969)
Q Consensus 833 ~~~~~L~~~~~ 843 (969)
..+..+.+|..
T Consensus 302 ~td~~irv~qv 312 (315)
T KOG0279|consen 302 YTDNVIRVWQV 312 (315)
T ss_pred ecCCcEEEEEe
Confidence 99999998854
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-30 Score=294.11 Aligned_cols=513 Identities=15% Similarity=0.165 Sum_probs=336.9
Q ss_pred CCCCccccccccCccccccccccCCcEEEEeeCCCCcEEEEeeccCCCce--------eEEEecCCCce---eeeeehhh
Q 002086 265 SSGNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEFIVNEYSENGMW--------NKLSDLQTGKQ---LTMEEFEK 333 (969)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ld~g~~~vv~~~~~dg~~--------~~lWd~~tgk~---l~~~E~~~ 333 (969)
-||++.-.+.+..++-+.+-+.-..-++.-.++.. -+-+..|++||.. +.+|..-.-.. ..+.-.++
T Consensus 63 lSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~--~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~ 140 (893)
T KOG0291|consen 63 LSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKR--GVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRT 140 (893)
T ss_pred eCCCceEEEEEcCCCcEEEEecccceeeEEEeecC--ccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeee
Confidence 34666666666655544443332333332223222 2334445555544 47787743322 22333456
Q ss_pred ccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHH
Q 002086 334 SVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQK 413 (969)
Q Consensus 334 ~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~ 413 (969)
..||...|.++.+..+...++++++|.++..|....++- .....+.+++..+-+-.|.-+...++...
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---~~~~~l~gHkd~VvacfF~~~~~~l~tvs--------- 208 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---LFTYALNGHKDYVVACFFGANSLDLYTVS--------- 208 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEeccccc---cceEeccCCCcceEEEEeccCcceEEEEe---------
Confidence 689999999999999999999999999887765443222 11223333333222222332322222110
Q ss_pred HHhhccccCcceEEEcc---------------------CCCc-cccccccee-eeEecccccCEEEEEEeCCCCEEEEEe
Q 002086 414 EQKQNKNVSNHWVKVRQ---------------------SGKS-YKDLSALHL-CQEIQAHEGSIWTIKFSLDARFLASAG 470 (969)
Q Consensus 414 ~~~~~~~~~~~~v~v~~---------------------~~~~-l~dl~~~~l-~~~L~gH~~~I~~l~fSpDg~~LaTgs 470 (969)
.++....|-+... .++. .......+. ..-|..-...|+|.+|++.-++||+|-
T Consensus 209 ----kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF 284 (893)
T KOG0291|consen 209 ----KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF 284 (893)
T ss_pred ----cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence 0011111111100 0000 000000000 111223347899999999999999999
Q ss_pred CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeec-CCCceeE
Q 002086 471 EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSL-SEKPFCS 549 (969)
Q Consensus 471 ~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~k~~~~ 549 (969)
..|...+|++....++..+.....++..+.+...+.-.++.+... ....+|.. .+.-+..
T Consensus 285 ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~kl-------------------gQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 285 SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKL-------------------GQLLVWEWQSESYVLK 345 (893)
T ss_pred cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCcc-------------------ceEEEEEeeccceeee
Confidence 999999999999988887766656665555554333222222110 01123333 2334456
Q ss_pred eccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
.+||...|.+++++| +++++||+.||.|+|||..++-|+.+| .|+..|+.+.|+. .++.+++.+.||+|+.||+...
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccc
Confidence 789999999999999 899999999999999999999999999 8999999999999 9999999999999999999988
Q ss_pred eEEEEecCCCC--EEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 628 LVVDWTDLHEM--VTAACYTPDGQNALIGSHKG-SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 628 ~~~~~~~~~~~--V~sv~fspdg~~Lasgs~dg-~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
.....+....+ ..|++..|.|..+++|+.|. .|++|++.+++++... .+|.++|.+++|+|.+ ..|++
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL--------sGHEgPVs~l~f~~~~-~~LaS 495 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL--------SGHEGPVSGLSFSPDG-SLLAS 495 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh--------cCCCCcceeeEEcccc-CeEEe
Confidence 87777766654 57888899999999999876 7999999999976553 8999999999999998 79999
Q ss_pred EeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeee
Q 002086 705 TSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKD 784 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~ 784 (969)
++.|.+|++||+.......+.......++.++|.|||+-|++++.||.|.+||.+......+-. .-...
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id------grkD~----- 564 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID------GRKDL----- 564 (893)
T ss_pred ccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc------chhhc-----
Confidence 9999999999977655555555666779999999999999999999999999998743321100 00000
Q ss_pred eEEeecCCCcccCCCCCccEEEccccc-ccCCCCcccccCCCCCCccccCCCCccccCCCCCCcc
Q 002086 785 VSVAIPWPGMVKGEPPPTPVQTKKHAK-RISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKV 848 (969)
Q Consensus 785 ~s~~~~w~~~i~G~~~~~~v~~~~~~~-~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~ 848 (969)
..|. ...-. ..... ..+-.+...+.|++|..|.+++....+..|....+.+
T Consensus 565 ----------~~gR-~~~D~--~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 565 ----------SGGR-KETDR--ITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred ----------cccc-cccce--eehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 0000 00000 00011 1122345667788888888888877776666554433
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-31 Score=271.67 Aligned_cols=291 Identities=22% Similarity=0.384 Sum_probs=237.2
Q ss_pred hhhccCCCcceeeee-cccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 331 FEKSVGHSPVVKELM-RRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~-~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
...+.||.+-|.+++ .+.++..+++++.|..+..|. +.+.
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~-----L~~d---------------------------------- 48 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWK-----LTSD---------------------------------- 48 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEE-----eccC----------------------------------
Confidence 356789999999999 566788888888887665543 1111
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEee
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~ 489 (969)
|...+..++.|+||+..|..+..++||++.++++.|+++++||+.+|+..+
T Consensus 49 ---------------------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~-- 99 (315)
T KOG0279|consen 49 ---------------------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR-- 99 (315)
T ss_pred ---------------------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE--
Confidence 112223455688999999999999999999999999999999999875543
Q ss_pred cCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE
Q 002086 490 EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL 568 (969)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L 568 (969)
.|.||...|.+++|++ +..+
T Consensus 100 -----------------------------------------------------------~f~GH~~dVlsva~s~dn~qi 120 (315)
T KOG0279|consen 100 -----------------------------------------------------------RFVGHTKDVLSVAFSTDNRQI 120 (315)
T ss_pred -----------------------------------------------------------EEEecCCceEEEEecCCCcee
Confidence 6889999999999999 7899
Q ss_pred EEEeCCCcEEEEECCCCcEEEEee--cCCCeEEEEEecCC-CCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEE
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMD-DDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACY 644 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~-~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~f 644 (969)
++|+.|++|++||+.......... +.+.|.|+.|+|.. ..+|++++.|++|++||+++.++.. +.+|.+.++.+++
T Consensus 121 vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 121 VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV 200 (315)
T ss_pred ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEE
Confidence 999999999999998776666553 47899999999943 6799999999999999999988664 6678899999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE--
Q 002086 645 TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK-- 722 (969)
Q Consensus 645 spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~-- 722 (969)
+|||...++|+.||.+.+||++.++.... ..+...|.+++|+|.. +.++...+..|+|||.......
T Consensus 201 SpDGslcasGgkdg~~~LwdL~~~k~lys---------l~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 201 SPDGSLCASGGKDGEAMLWDLNEGKNLYS---------LEAFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred CCCCCEEecCCCCceEEEEEccCCceeEe---------ccCCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhh
Confidence 99999999999999999999999887544 5678899999999974 6666677777999996532221
Q ss_pred ----EEee---cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 723 ----FRGF---RNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 723 ----~~~~---~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+.+. .......+++|++||..|++|-.|+.|++|.+.
T Consensus 270 l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 LKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1111 123345688999999999999999999999875
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.7e-31 Score=296.52 Aligned_cols=377 Identities=20% Similarity=0.301 Sum_probs=279.1
Q ss_pred eEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccc--cccccc------------------
Q 002086 315 NKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSK--SLRMSK------------------ 374 (969)
Q Consensus 315 ~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~--~~~~~k------------------ 374 (969)
.|||.+...+-+. ...+.||...|-++.+..+...+.|.+.|+.+..|.-- +...++
T Consensus 169 ~rl~~v~~~k~~~---~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~E 245 (893)
T KOG0291|consen 169 ARLFGVDGNKNLF---TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGE 245 (893)
T ss_pred EEEEEeccccccc---eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccch
Confidence 3899998877644 46678999999999999888889999999999888522 211111
Q ss_pred ---------ccccccc----ceeeeeEE-------EeeecCCc--cccCCCCcccch---HHHHHHhhccccCcceEEEc
Q 002086 375 ---------RRGAALL----KNIKGVAH-------SMSVKGDK--ECINPNPLLGDQ---REQKEQKQNKNVSNHWVKVR 429 (969)
Q Consensus 375 ---------~~~~~~l----~~v~gv~~-------s~~~~gd~--~~~~~~~l~~~~---~~~~~~~~~~~~~~~~v~v~ 429 (969)
+...+.+ ..+.+.++ .+.|..-. ....|...+-.. .++....-.-+....|+-.+
T Consensus 246 ek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g 325 (893)
T KOG0291|consen 246 EKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFG 325 (893)
T ss_pred hhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEc
Confidence 0000111 11111111 11111111 111121111110 00111111234456677665
Q ss_pred cCC---CcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCC
Q 002086 430 QSG---KSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDK 506 (969)
Q Consensus 430 ~~~---~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~ 506 (969)
..+ --+|+++....+...+||...|+|++++|||+++|||+.||.|||||...|-++.
T Consensus 326 ~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v------------------- 386 (893)
T KOG0291|consen 326 CSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV------------------- 386 (893)
T ss_pred CCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE-------------------
Confidence 444 2368899888999999999999999999999999999999999999998766544
Q ss_pred CccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC
Q 002086 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK 585 (969)
Q Consensus 507 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~ 585 (969)
+|..|+..|+++.|+. ++.+++++.||+|+.||+...
T Consensus 387 ------------------------------------------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 387 ------------------------------------------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ------------------------------------------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 6778999999999998 899999999999999999999
Q ss_pred cEEEEeec--CCCeEEEEEecCCCCEEEEEECCCe-EEEEeCCCceEEEE-ecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 002086 586 SCLKLFAH--NDYVTCIQFNPMDDDYFISGSLDAK-VRIWSISDRLVVDW-TDLHEMVTAACYTPDGQNALIGSHKGSCR 661 (969)
Q Consensus 586 ~~i~~~~h--~~~V~sv~fsp~~~~~L~sgs~Dg~-I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~~Lasgs~dg~I~ 661 (969)
.+.++|.. .-...|++..| .+.++.+|+.|.. |++|++++|+++.. .+|.++|.+++|+|++..|++++.|.+|+
T Consensus 425 rNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 99999944 44567889988 8999999988864 99999999998874 56889999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE------------------
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF------------------ 723 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~------------------ 723 (969)
+||+-...-.. .. -.....++.++|.|+| ..|++++.||.|.+||........
T Consensus 504 iW~if~s~~~v-Et-------l~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 504 IWDIFSSSGTV-ET-------LEIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred EEEeeccCcee-ee-------EeeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence 99996652211 11 2346779999999999 899999999999999955433221
Q ss_pred --EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccC
Q 002086 724 --RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAS 765 (969)
Q Consensus 724 --~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~ 765 (969)
+........+.+++++||.+|++|+....|+||++.++-.++
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 011123567899999999999999999999999999865543
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.5e-31 Score=265.24 Aligned_cols=290 Identities=20% Similarity=0.368 Sum_probs=240.5
Q ss_pred CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeee--
Q 002086 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS-- 541 (969)
Q Consensus 464 ~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 541 (969)
-+|||+|.|.+||+|...+|.+..+++.....+..+...+.....+..+.... .+|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhv---------------------RlyD~~ 69 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHV---------------------RLYDLN 69 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCee---------------------EEEEcc
Confidence 48999999999999999999999998887777776666655444444333222 2222
Q ss_pred -cCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 542 -LSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 542 -~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
....|+..+.+|++.|+++.|.. +..++||+.||+++|||++...+.+.+.|..+|++|..+| +...|++|..+|.|
T Consensus 70 S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~i 148 (311)
T KOG0315|consen 70 SNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNI 148 (311)
T ss_pred CCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcE
Confidence 23458899999999999999997 8999999999999999999999999999999999999999 88999999999999
Q ss_pred EEEeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 620 RIWSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
++||+....+....- ....|.++...|||.+++.+...|++++|++-..... ..+....+...|.+-+..+.++|+
T Consensus 149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~--s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA--SELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc--ccceEhhheecccceEEEEEECCC
Confidence 999999875544332 3367999999999999999999999999999875432 223344556899999999999999
Q ss_pred CCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEeccc
Q 002086 698 NPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRN 776 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~ 776 (969)
+ ++|++++.|.+++||+.... ........|...+..++||.||+||+||+.|+.+++|++.. ++.+.....+
T Consensus 227 ~-k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~------~k~v~qy~gh 299 (311)
T KOG0315|consen 227 V-KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA------GKEVRQYQGH 299 (311)
T ss_pred C-cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc------CceeeecCCc
Confidence 8 89999999999999997766 44444556778899999999999999999999999999998 5666666677
Q ss_pred CCceeeee
Q 002086 777 HEHFQCKD 784 (969)
Q Consensus 777 ~~~~~~~~ 784 (969)
+....|..
T Consensus 300 ~K~~vc~~ 307 (311)
T KOG0315|consen 300 HKAAVCVA 307 (311)
T ss_pred ccccEEEE
Confidence 76666543
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=3.8e-29 Score=274.06 Aligned_cols=465 Identities=18% Similarity=0.223 Sum_probs=319.7
Q ss_pred CCccccccccCccccccccccCCcEEEEeeCCCCcEEEEeeccCCCcee---------EEEecCCCceeeeeehhhccCC
Q 002086 267 GNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEFIVNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGH 337 (969)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ld~g~~~vv~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GH 337 (969)
|-+.+++-.||+- +.+-.++....+-|+.-. .-...|+.+++.|.++ |+||.....-+-+.||+-+.
T Consensus 28 pkgd~ilY~nGks-v~ir~i~~~~~~~iYtEH-~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a-- 103 (603)
T KOG0318|consen 28 PKGDNILYTNGKS-VIIRNIDNPASVDIYTEH-AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA-- 103 (603)
T ss_pred CCCCeEEEeCCCE-EEEEECCCccceeeeccc-cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc--
Confidence 3344555445532 233333333344444433 2334556677777776 99999775555557887776
Q ss_pred CcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCcc-ccCCCCcccchHHHHHHh
Q 002086 338 SPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKE-CINPNPLLGDQREQKEQK 416 (969)
Q Consensus 338 s~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~-~~~~~~l~~~~~~~~~~~ 416 (969)
++|..++...+..+++..++-. -+ .+..|.+........+..+.....++.|.+.+. ++.++
T Consensus 104 -G~I~Di~Wd~ds~RI~avGEGr-er--fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~------------- 166 (603)
T KOG0318|consen 104 -GPIKDISWDFDSKRIAAVGEGR-ER--FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATG------------- 166 (603)
T ss_pred -cccccceeCCCCcEEEEEecCc-cc--eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEec-------------
Confidence 4899999887777766432211 11 123333333332223333333333443333322 11111
Q ss_pred hccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 417 QNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 417 ~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
..+..+-+ .+=+++++..+++.|..-|.|+.|+|||.++||+|.||+|.|||-.+|+.+..+..
T Consensus 167 --sdDn~v~f---------feGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~----- 230 (603)
T KOG0318|consen 167 --SDDNTVAF---------FEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED----- 230 (603)
T ss_pred --cCCCeEEE---------eeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-----
Confidence 12222222 24566778888999999999999999999999999999999999999988875431
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK 575 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg 575 (969)
-.+|.+.|++|+|+| +..|+|++.|+
T Consensus 231 -----------------------------------------------------~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 231 -----------------------------------------------------SDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred -----------------------------------------------------CCCccccEEEEEECCCCceEEEecCCc
Confidence 136999999999999 89999999999
Q ss_pred cEEEEECCCCcEEEEeecC----CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCE
Q 002086 576 TVRLWDMETKSCLKLFAHN----DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~~h~----~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~ 650 (969)
+++|||+.+.++++++... +.-..+.| .+..|++.+.+|+|.+++.....+. ...+|...|+++..++++++
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEE---eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 9999999999999988433 33445556 3689999999999999999887754 46778899999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------------
Q 002086 651 ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD------------ 718 (969)
Q Consensus 651 Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------------ 718 (969)
|++|+.||.|.-|+...+..... ....|...|.+++-+..+ .+++.+.|.++++.+...
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~-------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg 405 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRL-------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLG 405 (603)
T ss_pred EEeeccCceEEEEecCCcccccc-------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecC
Confidence 99999999999999988764322 125688889999888754 788889999999885210
Q ss_pred --c----------eE---------EEEee------cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeE
Q 002086 719 --I----------VH---------KFRGF------RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAI 771 (969)
Q Consensus 719 --~----------~~---------~~~~~------~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~ 771 (969)
. .. .+..+ .-.-...+++++|++.+++.|+.||.|+||.+........ .
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee----~ 481 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE----A 481 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce----e
Confidence 0 00 00000 0112235788999999999999999999999986432111 1
Q ss_pred EecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccC
Q 002086 772 ITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERV 851 (969)
Q Consensus 772 ~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~ 851 (969)
.... ..+.....+.||++.+++++...+.+.+|...+......
T Consensus 482 ~~~~-------------------------------------h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 482 KLLE-------------------------------------HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN 524 (603)
T ss_pred eeec-------------------------------------ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc
Confidence 1111 122334556799999999999999999998887766433
Q ss_pred CC-CCCCCccccccCCCCCCccccC
Q 002086 852 PS-PPEEELSLISHDPGISESFTSN 875 (969)
Q Consensus 852 l~-~pee~l~~is~hP~~~~~~~~s 875 (969)
.. -|...+.+++|.|. +..++++
T Consensus 525 ~w~FHtakI~~~aWsP~-n~~vATG 548 (603)
T KOG0318|consen 525 RWAFHTAKINCVAWSPN-NKLVATG 548 (603)
T ss_pred eeeeeeeeEEEEEeCCC-ceEEEec
Confidence 33 38999999999998 4455554
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.5e-31 Score=282.96 Aligned_cols=281 Identities=15% Similarity=0.274 Sum_probs=234.1
Q ss_pred cCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCC--ccccCCCCcccchHHH
Q 002086 335 VGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGD--KECINPNPLLGDQREQ 412 (969)
Q Consensus 335 ~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd--~~~~~~~~l~~~~~~~ 412 (969)
.|-+.+|..+.++.+...++||+-.+.+..|... .......++.+...+..+.|+|. ..++++..
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~-----~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s-------- 238 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP-----QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS-------- 238 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecC-----CcceeEEEeccccceeeEEEccCCCccceeeec--------
Confidence 5778889999999999999999988877666543 22333345555555556666655 23333331
Q ss_pred HHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCC
Q 002086 413 KEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGN 492 (969)
Q Consensus 413 ~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~ 492 (969)
.++.. ++|.+.+-..++.|.||...|..++|+|+|++|+|++.|.+-++||+.+++.+.
T Consensus 239 -----~Dgtv-----------klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL----- 297 (459)
T KOG0272|consen 239 -----ADGTV-----------KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL----- 297 (459)
T ss_pred -----cCCce-----------eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-----
Confidence 22222 234566667888999999999999999999999999999999999999765433
Q ss_pred ccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEE
Q 002086 493 LTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSS 571 (969)
Q Consensus 493 ~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg 571 (969)
...||...|.+++|.+ |.+++||
T Consensus 298 --------------------------------------------------------~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 298 --------------------------------------------------------LQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred --------------------------------------------------------hhcccccccceeEecCCCceeecc
Confidence 3468999999999999 8999999
Q ss_pred eCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEcc-CC
Q 002086 572 SMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTP-DG 648 (969)
Q Consensus 572 s~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fsp-dg 648 (969)
+.|..-+|||++++.++..+ +|..+|.+|+|+| +|..|++|+.|++++|||++....+. +..|.+-|+.|.|+| .|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 99999999999999999888 8999999999999 99999999999999999999876554 556778899999999 78
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 649 ~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.+|++++.|++++||...+..+.... .+|.+.|.++.+++++ +.+++++.|.+|++|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~~~~ksL--------aGHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTWSPLKSL--------AGHEGKVISLDISPDS-QAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCcccchhh--------cCCccceEEEEeccCC-ceEEEeccCceeeecc
Confidence 89999999999999999998865443 7899999999999998 8999999999999995
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=4.5e-30 Score=294.53 Aligned_cols=211 Identities=27% Similarity=0.531 Sum_probs=190.5
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.......+|.||+++|+.+.|+|+.++|++||+|++||+|.+.+...+-
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V------------------------------- 487 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------------- 487 (707)
T ss_pred cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE-------------------------------
Confidence 3344456699999999999999999999999999999999998755433
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
.+.||..+|+++.|+| |-+|+|+|.|++.++|.......++++ +|...
T Consensus 488 ------------------------------~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD 537 (707)
T KOG0263|consen 488 ------------------------------IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD 537 (707)
T ss_pred ------------------------------EecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence 5678999999999999 999999999999999999999999988 89999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
|.|+.|+| +.+|+++||.|.+|++||+.+|..+. +.+|..+|.+++|+|+|++|++|+.||.|.|||+.++.++...
T Consensus 538 V~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l- 615 (707)
T KOG0263|consen 538 VDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL- 615 (707)
T ss_pred cceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh-
Confidence 99999999 99999999999999999999987655 5678899999999999999999999999999999998865432
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
.+|.+.|.++.|+.+| ..|++|+.|.+|++||..+..
T Consensus 616 -------~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 616 -------KGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred -------hcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhc
Confidence 7789999999999999 899999999999999965433
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=8.3e-30 Score=292.33 Aligned_cols=275 Identities=24% Similarity=0.347 Sum_probs=223.4
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
++.--...++|+.|++|+.+||.|-.|..|++|.+...++.. ++..... ........
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~-lk~~~~l-------~~~d~~sa--------------- 429 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK-LKDASDL-------SNIDTESA--------------- 429 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcc-ccchhhh-------cccccccc---------------
Confidence 333345679999999999999999999999999998543221 1110000 00000000
Q ss_pred CCCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 526 KHSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
.......+. .......+.||+++|+.+.|+| .++|+++|.|++||+|.+.+..++..+ +|..+|+.+.|
T Consensus 430 --------d~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 430 --------DVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF 501 (707)
T ss_pred --------chhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEe
Confidence 000011111 2223346899999999999999 899999999999999999999999888 89999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+| .|-+|++++.|++.++|......... +.+|...|.|+.|+|+..|+++|+.|.+|++||+.++..+..+
T Consensus 502 ~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF------- 573 (707)
T KOG0263|consen 502 AP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF------- 573 (707)
T ss_pred cC-CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-------
Confidence 99 89999999999999999998876655 4567788999999999999999999999999999999876554
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+|..+|++++|+|+| .+|++|+.|+.|.+||+...........|.+.|.++.|+.||..||+|+.|.+|++||+...
T Consensus 574 -~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 574 -TGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -cCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 7899999999999988 89999999999999998876655555566888999999999999999999999999999864
No 17
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.8e-28 Score=276.23 Aligned_cols=479 Identities=17% Similarity=0.240 Sum_probs=329.3
Q ss_pred eEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeec
Q 002086 315 NKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVK 394 (969)
Q Consensus 315 ~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~ 394 (969)
+++|+.+++.. +-++.||...|+.+.+...+.++++|+.|..+..|+. -.......+++++....-..|.
T Consensus 89 Vqif~~~s~~~-----~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDl-----V~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 89 VQIFSLESEEI-----LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDL-----VGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred EEeeccCCCce-----eeeecccccceEEEEEcccCceEeecCCCccEEEEEe-----ccceeeEEeecchHHHhHHhcc
Confidence 49999998854 5678999999999999999999999999998888852 1111111111111111101011
Q ss_pred CCccccCCCCcccchHHHHHHhhccccCcceEEEc-cCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCC
Q 002086 395 GDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVR-QSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDR 473 (969)
Q Consensus 395 gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~Dg 473 (969)
+.....|.+. .+.-++|+|.+-++..+.-+|++.|+++++.+ +.+++++.|+
T Consensus 159 -------------------------~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~ds 211 (888)
T KOG0306|consen 159 -------------------------NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDS 211 (888)
T ss_pred -------------------------CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCC
Confidence 1111111111 22335779999999999999999999999987 7899999999
Q ss_pred cEEEEeccc----------------ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc-------------cc---
Q 002086 474 VIHVWEVQE----------------CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP-------------EK--- 521 (969)
Q Consensus 474 tVrIWDl~t----------------g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~-------------~~--- 521 (969)
.++||++.. |...+. +....+... ....+......|....... .+
T Consensus 212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq--sk~R~i~l~-~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k 288 (888)
T KOG0306|consen 212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQ--SKGREINLV-TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK 288 (888)
T ss_pred ceEEEEeecccccccccccceeeccceeeec--cCCceeEEe-ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence 999999821 111110 000011000 0000000000000000000 00
Q ss_pred --ccCCC-----------------------------------CCCCC-----cccccceeeecCC--Cc--------eeE
Q 002086 522 --KKKGK-----------------------------------HSSPD-----YVHVPETVFSLSE--KP--------FCS 549 (969)
Q Consensus 522 --~~~~~-----------------------------------~~~~~-----~~~~~~~v~~~~~--k~--------~~~ 549 (969)
++... ..... +.......+.+.. +. ...
T Consensus 289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~ 368 (888)
T KOG0306|consen 289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE 368 (888)
T ss_pred HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence 00000 00000 0111111222221 11 146
Q ss_pred eccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE
Q 002086 550 FIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 550 l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
+.||...|.+++++.++.++..+..+.|+||+..+.+|++++... .+.+..|-| .+.++++|...|.+.+||+....+
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehhhh
Confidence 789999999999999887777788899999999999999999766 899999999 899999999999999999998876
Q ss_pred EEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce-----eeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 630 VDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL-----HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 630 ~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~-----~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
+... .|.+.|..++.+||+..+++|+.|.+|++||..--.. .....+ .....-.-...|.|+.++|++ .+|+
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl-~~~rtLel~ddvL~v~~Spdg-k~La 524 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL-KHTRTLELEDDVLCVSVSPDG-KLLA 524 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee-ccceEEeccccEEEEEEcCCC-cEEE
Confidence 6544 5889999999999999999999999999999752111 000000 001112346789999999998 8999
Q ss_pred EEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeee
Q 002086 704 VTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCK 783 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~ 783 (969)
++--|.++.||-+.+....+..++|.-+|.|+.++||+++++||+.|.+|+||-++=+.+... +..+...+.
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS------~fAHdDSvm-- 596 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS------FFAHDDSVM-- 596 (888)
T ss_pred EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh------hhcccCcee--
Confidence 999999999999888888888889999999999999999999999999999999986543221 111111111
Q ss_pred eeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccccc
Q 002086 784 DVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLIS 863 (969)
Q Consensus 784 ~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is 863 (969)
...|-|...+.++.+.++.+.-|........+++..|..++.+++
T Consensus 597 -----------------------------------~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa 641 (888)
T KOG0306|consen 597 -----------------------------------SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA 641 (888)
T ss_pred -----------------------------------EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE
Confidence 112345666778889999999999888889999999999999999
Q ss_pred cCCCCCCccccC-CCccc
Q 002086 864 HDPGISESFTSN-SSSIR 880 (969)
Q Consensus 864 ~hP~~~~~~~~s-~~~~r 880 (969)
-.|..+=.+++| ++++|
T Consensus 642 v~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 642 VSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred EcCCCCeEEeccCCceeE
Confidence 888877666666 68888
No 18
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.2e-31 Score=274.15 Aligned_cols=265 Identities=25% Similarity=0.327 Sum_probs=228.5
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE---------EecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD---------WTDLHEMVTAACYTPDGQNALIGSHKGSCR 661 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~---------~~~~~~~V~sv~fspdg~~Lasgs~dg~I~ 661 (969)
|+....+.|..|+| ++++|++|+.||.|.+|+..+|++.. +.-+..+|.|++|+.|...+++|+.||.|+
T Consensus 210 Fg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 210 FGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred cccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 46677889999999 99999999999999999999987653 344567899999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg 741 (969)
+|.+.++.+...+ .+.|...|+|+.|+.|+ ..+++++.|.+++|.-+......-....|...|+.+.|++||
T Consensus 289 vWri~tG~ClRrF-------drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 289 VWRIETGQCLRRF-------DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred EEEEecchHHHHh-------hhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC
Confidence 9999999875432 26899999999999998 789999999999999876655544445677889999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccCCCce---------eEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccc
Q 002086 742 KYIISASEDSQVYVWKREEHRNASTGKR---------AIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKR 812 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t~~~~~t~k~---------~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~ 812 (969)
.++++++.||+|++|+.++.+++.+.++ ++++....+++..++.+..+. .-.-.++.++++.++++
T Consensus 361 ~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~-----imn~qGQvVrsfsSGkR 435 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVY-----IMNMQGQVVRSFSSGKR 435 (508)
T ss_pred CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEE-----EEeccceEEeeeccCCc
Confidence 9999999999999999999998887663 455666667765444443332 23447889999999999
Q ss_pred cCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCC
Q 002086 813 ISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGIS 869 (969)
Q Consensus 813 ~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~ 869 (969)
+++.++.++.||.|+|+||.++|+++|+|...++.++++++.||++++++.|||.-+
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 999999999999999999999999999999999999999999999999999999955
No 19
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=282.49 Aligned_cols=286 Identities=23% Similarity=0.401 Sum_probs=241.0
Q ss_pred cceeeeEecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
+-+++.++.||+..|+++.|.| .+.+|++||.|+.|+||++.. +.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~--------------------------------- 249 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR--------------------------------- 249 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc---------------------------------
Confidence 3466788999999999999999 899999999999999999864 33
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY 596 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~ 596 (969)
.+.++.||..+|.+++|++ +..|++++.|+.|++||+++|+++..|.....
T Consensus 250 ----------------------------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~ 301 (503)
T KOG0282|consen 250 ----------------------------CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKV 301 (503)
T ss_pred ----------------------------eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCC
Confidence 3347889999999999998 99999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
++|+.|+|.+.+.|++|+.|+.|+.||++++++++.+.+ -+.|..+.|-++|..+++.+.|++++||+.+........
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i- 380 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI- 380 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh-
Confidence 999999995559999999999999999999998876654 488999999999999999999999999999877553321
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-----cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL-----DIVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-----~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
.........++..+|.+ .++++-+.|..|.++.+. +....+++|...+.-..+.|||||.+|++|+.|
T Consensus 381 ------~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 381 ------ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred ------cchhhccCcceecCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 13445567789999988 789999999999999854 345677888888889999999999999999999
Q ss_pred CcEEEEEcCCCCccCCCc---eeEEecccCCceeeeeeEEeecCCCccc
Q 002086 751 SQVYVWKREEHRNASTGK---RAIITTRNHEHFQCKDVSVAIPWPGMVK 796 (969)
Q Consensus 751 g~I~IWdl~t~~~~~t~k---~~~~~~~~~~~~~~~~~s~~~~w~~~i~ 796 (969)
|.+++||.++-+.+.+.+ ..++....|.+.+ ...+++.|.|.++
T Consensus 454 G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~--Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 454 GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP--SKVATCGWDGLIK 500 (503)
T ss_pred ccEEEeechhhhhhhccccCCcceEEEEecCCCc--ceeEecccCceeE
Confidence 999999999976665544 3455555555544 3344555777653
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.7e-30 Score=274.65 Aligned_cols=285 Identities=19% Similarity=0.303 Sum_probs=234.5
Q ss_pred ceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeC
Q 002086 382 KNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSL 461 (969)
Q Consensus 382 ~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSp 461 (969)
..+++++..+...|+...+..+. ..+. -.+|+...+..-..+++|..+|.+|.|++
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs---------------~SGE---------FtLWNg~~fnFEtilQaHDs~Vr~m~ws~ 148 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGS---------------QSGE---------FTLWNGTSFNFETILQAHDSPVRTMKWSH 148 (464)
T ss_pred cccccceeeEEEcCCCceeEeec---------------cccc---------EEEecCceeeHHHHhhhhcccceeEEEcc
Confidence 44667788887788866644331 1111 12455555555566899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeee
Q 002086 462 DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541 (969)
Q Consensus 462 Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 541 (969)
+|.+++||+.+|.||+|+..-..
T Consensus 149 ~g~wmiSgD~gG~iKyWqpnmnn--------------------------------------------------------- 171 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPNMNN--------------------------------------------------------- 171 (464)
T ss_pred CCCEEEEcCCCceEEecccchhh---------------------------------------------------------
Confidence 99999999999999999965211
Q ss_pred cCCCceeEecc-CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCe
Q 002086 542 LSEKPFCSFIG-HLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAK 618 (969)
Q Consensus 542 ~~~k~~~~l~g-H~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~ 618 (969)
++.+.. |...|.+++|+| +..|++++.||+|+|||....+....+ +|.-.|.+++|+| ...+|++|+.|..
T Consensus 172 -----Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnl 245 (464)
T KOG0284|consen 172 -----VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNL 245 (464)
T ss_pred -----hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCce
Confidence 112333 458999999999 899999999999999999988776655 8999999999999 8999999999999
Q ss_pred EEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 619 VRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 619 I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
|++||.+++.++ .+..|...|..+.|++++++|++++.|..+++||+++.+.+.. .++|...++++.|+|-
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~--------~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT--------YRGHKKDVTSLTWHPL 317 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH--------hhcchhhheeeccccc
Confidence 999999998765 4667889999999999999999999999999999995543322 2789999999999999
Q ss_pred CCceEEEEeCCCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 698 NPSEVLVTSADSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+.+|.+|+.||.|..|... +.......+.|...|.+++|+|-|.+|++|+.|.++++|.-.-+
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 98999999999999999966 22223345678889999999999999999999999999987643
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=6.3e-29 Score=256.71 Aligned_cols=267 Identities=25% Similarity=0.389 Sum_probs=227.2
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+..+.+|++.|+++.|+|+|.+|||||.|..|.+|++....
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------------------- 80 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--------------------------------------- 80 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc---------------------------------------
Confidence 44578999999999999999999999999999999975311
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
+.+..+++|.+.|..+.|.+ +..|++++.|++|+.||+++|++++.+ .|...|+++.
T Consensus 81 ---------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 81 ---------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred ---------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC
Confidence 11236779999999999998 899999999999999999999999887 7999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
-......++.+++.|+++++||+++...++.+.....++++.|..++..+++|+-|+.|++||++.+......
T Consensus 140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l------- 212 (338)
T KOG0265|consen 140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL------- 212 (338)
T ss_pred ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEe-------
Confidence 6654456788899999999999999999998888899999999999999999999999999999888765443
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------ceEEEEeecCCC--CeEEEEEeCCCCEEEEEeCCCcE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD------IVHKFRGFRNTS--SQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------~~~~~~~~~~~~--~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
.+|..+|+.+..+|+| .++++-+.|.++++||.+. ++..+.++.|.- ....++|+|++.++..|+.|..+
T Consensus 213 -sGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 213 -SGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred -ecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 8999999999999998 8999999999999999653 356666665543 34578999999999999999999
Q ss_pred EEEEcCCCCccCCCceeEEecccCCceeeeee
Q 002086 754 YVWKREEHRNASTGKRAIITTRNHEHFQCKDV 785 (969)
Q Consensus 754 ~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~ 785 (969)
++||... .+.++.+..+...+.|.++
T Consensus 291 yvwd~~~------r~~lyklpGh~gsvn~~~F 316 (338)
T KOG0265|consen 291 YVWDTTS------RRILYKLPGHYGSVNEVDF 316 (338)
T ss_pred EEeeccc------ccEEEEcCCcceeEEEeee
Confidence 9999986 3455556555555554333
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.5e-29 Score=280.76 Aligned_cols=451 Identities=16% Similarity=0.203 Sum_probs=288.6
Q ss_pred CCccccccccCccccccccccCCcEEEEeeCCCCcE----------EEEeeccCCCceeEEEecCCCceeeeeehhhccC
Q 002086 267 GNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKE----------FIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVG 336 (969)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ld~g~~----------~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~G 336 (969)
+|....++..++....+++...+.+++.|......- .++..++.||. ++|||+..+.. ...+.|
T Consensus 72 ~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~-v~VWdi~~~~~-----th~fkG 145 (775)
T KOG0319|consen 72 PDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGR-VKVWDIKNGYC-----THSFKG 145 (775)
T ss_pred CCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccce-EEEEEeeCCEE-----EEEecC
Confidence 445555565555555555555555555555421111 23344555444 48999999977 468899
Q ss_pred CCcceeeeecccccc--cccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCC------------
Q 002086 337 HSPVVKELMRRENVN--RINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINP------------ 402 (969)
Q Consensus 337 Hs~~V~~l~~~~~~~--~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~------------ 402 (969)
|-+.|.++.|.++.. .++.|..|..+..|.... +..+.+.++.+.+.+.++.|..|...+.+
T Consensus 146 ~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~----~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 146 HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND----KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred CCceEEEEEeCCccchhheeecCCCceEEEEEccc----CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 999999999766554 477888999888886442 22245555666666666666555332111
Q ss_pred --------CCcccchHHHHHHhhccccCcceEEE---------------------------------------------c
Q 002086 403 --------NPLLGDQREQKEQKQNKNVSNHWVKV---------------------------------------------R 429 (969)
Q Consensus 403 --------~~l~~~~~~~~~~~~~~~~~~~~v~v---------------------------------------------~ 429 (969)
.|+.-.....-..+...+....|+.. .
T Consensus 222 ~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta 301 (775)
T KOG0319|consen 222 VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA 301 (775)
T ss_pred hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc
Confidence 11100000000000000000011110 0
Q ss_pred cCCCcccccccceeeeEecccccCEEEEEEe-CCCCEEEEEeCCCcEEEEeccc--ceEEEeecCCccCcccccccCCCC
Q 002086 430 QSGKSYKDLSALHLCQEIQAHEGSIWTIKFS-LDARFLASAGEDRVIHVWEVQE--CEVMSMSEGNLTPIHPSLCNSSDK 506 (969)
Q Consensus 430 ~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fS-pDg~~LaTgs~DgtVrIWDl~t--g~~l~~~~~~~~~v~~~~~~~~~~ 506 (969)
...-.+.|..++++...+-|..+.|..|+|- |+.++||.++..+.+|++++.+ .+++. +|...+..+......
T Consensus 302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~---GH~e~vlSL~~~~~g- 377 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIP---GHTEAVLSLDVWSSG- 377 (775)
T ss_pred cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEe---CchhheeeeeecccC-
Confidence 0001122334444444455555556665554 2344555555555566665442 22222 111111100000000
Q ss_pred CccCCCCCCCCCcccccCCCCCCCCcccccceeeecC-----CCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEE
Q 002086 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS-----EKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRL 579 (969)
Q Consensus 507 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~I 579 (969)
.....+.. .....+|.+. ..++....||+..|.+++++. -.+|+++|.|++|++
T Consensus 378 ~llat~sK-------------------D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 378 DLLATGSK-------------------DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred cEEEEecC-------------------CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 00000000 0001112111 112335678999999999987 579999999999999
Q ss_pred EECCCCcE----EEE------eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCC
Q 002086 580 WDMETKSC----LKL------FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 580 WDl~t~~~----i~~------~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg 648 (969)
|++...+. +.. ..|...|+|++++| ++.+|+|||.|.+.+||++....+. .+.+|...|.++.|++..
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d 517 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND 517 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEecccc
Confidence 99976221 111 16999999999999 9999999999999999999977655 466788999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC
Q 002086 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN 728 (969)
Q Consensus 649 ~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~ 728 (969)
+.+++++.|++|+||.+.+..+...+ .+|...|..+.|-.++ ..|++++.||-|++|+..+..+....-.|
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~--------eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTF--------EGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNECEMTLDAH 588 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeee--------cCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence 99999999999999999999887654 7899999999999887 89999999999999998877777677778
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 729 TSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
...|.+++.++.+.+++||+.||.|.+|.=.+
T Consensus 589 ~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 589 NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 88899999999999999999999999998554
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=3.4e-28 Score=250.35 Aligned_cols=289 Identities=17% Similarity=0.281 Sum_probs=229.9
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
+.+.||...|.++.+..+...+++++-|+.+..|+.-. ..+.+-+.-...-+...+|.|....++.+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~T-----tnK~haipl~s~WVMtCA~sPSg~~VAcGG------- 116 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFT-----TNKVHAIPLPSSWVMTCAYSPSGNFVACGG------- 116 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccc-----ccceeEEecCceeEEEEEECCCCCeEEecC-------
Confidence 45689999999999999999999999999888776332 111222222223344444555543322221
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecC
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEG 491 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~ 491 (969)
-+-..-||.-...+ .-......++|.+|++-+.|+.|-+|+ .|+|++.|.++.+||+++|+.+.
T Consensus 117 --------LdN~Csiy~ls~~d---~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~---- 180 (343)
T KOG0286|consen 117 --------LDNKCSIYPLSTRD---AEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQ---- 180 (343)
T ss_pred --------cCceeEEEeccccc---ccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEE----
Confidence 11112233222110 011224567899999999999999854 79999999999999999988765
Q ss_pred CccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEE
Q 002086 492 NLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLL 569 (969)
Q Consensus 492 ~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~ 569 (969)
.|.||.+.|.++.++| .+.|+
T Consensus 181 ---------------------------------------------------------~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 181 ---------------------------------------------------------VFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred ---------------------------------------------------------EecCCcccEEEEecCCCCCCeEE
Confidence 6779999999999999 68999
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC---CCEEEEEEc
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYT 645 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~fs 645 (969)
+|+.|++.+|||++.+.+.++| +|...|++|.|.| ++.-|++|+.|++.++||++..+.+..+.+. ..|++++|+
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 9999999999999999999998 8999999999999 9999999999999999999998777666654 579999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 646 PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 646 pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
..|++|++|..|.++.+||.-.++..... .+|...|+++..+|+| .-+++|+.|.+++||.
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L--------~GHeNRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGERVGVL--------AGHENRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccEEEeeecCCceeEeeccccceEEEe--------eccCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence 99999999999999999999877654332 7899999999999999 8999999999999994
No 24
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=2e-28 Score=253.04 Aligned_cols=249 Identities=21% Similarity=0.344 Sum_probs=216.8
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+++|.++|..+.|.+|++.|+++|.|++|+.||+++|+.+.
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r-------------------------------------- 126 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR-------------------------------------- 126 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee--------------------------------------
Confidence 367999999999999999999999999999999999988765
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
.+++|..-|..+.-+. -.++.+|+.|++++|||+++..+++++....+++++.|.
T Consensus 127 -----------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 127 -----------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFK 183 (338)
T ss_pred -----------------------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEec
Confidence 4567888888888554 368889999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
. ....+++|+-|+.|++||++.+... .+.+|.+.|+.+..+++|.++++-+.|.++++||++.....+....-+....
T Consensus 184 d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 184 D-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred c-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 8 8899999999999999999887655 5667889999999999999999999999999999987654332111123333
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
.........++|+|++ ..+.+|+.|..+++||.......+....|.+.|+++.|+|...+|.+++.|.+|++=.
T Consensus 263 hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhhhhcceeeccCCC-CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 4445667788999988 8999999999999999888788888888999999999999999999999999999743
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.6e-29 Score=261.63 Aligned_cols=274 Identities=25% Similarity=0.399 Sum_probs=236.6
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
...+.+.+.+|..+|+.+-|+|+-.++++++.|++|++||..+|++..
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~-------------------------------- 144 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER-------------------------------- 144 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh--------------------------------
Confidence 344566788999999999999999999999999999999999887643
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-CcEEEEe-ecCCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-KSCLKLF-AHNDY 596 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-~h~~~ 596 (969)
.++||++.|.+|.|+. +.+|++++.|-.+++||..+ .+|++.. +|...
T Consensus 145 -----------------------------~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~ 195 (406)
T KOG0295|consen 145 -----------------------------SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG 195 (406)
T ss_pred -----------------------------hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc
Confidence 5789999999999998 99999999999999999987 4565554 99999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
|.+++|-| .+++|++++.|.+|+.|++.++.++. +.+|...|..+..+.||..+++++.|.++++|-+.+.++...
T Consensus 196 vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~-- 272 (406)
T KOG0295|consen 196 VSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE-- 272 (406)
T ss_pred eeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh--
Confidence 99999999 88999999999999999999998765 556778999999999999999999999999999998865433
Q ss_pred eeecccccCCCCCeEEEEEcCC--------------CCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC
Q 002086 676 VDFQTKKKSSTRKITGFQFSPS--------------NPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd--------------~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg 741 (969)
...|..+|-+++|.|. +..++.+++.|++|++||+..+.+.+....|...|..++|+|.|
T Consensus 273 ------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G 346 (406)
T KOG0295|consen 273 ------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG 346 (406)
T ss_pred ------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence 2778899999999873 23589999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCce-eeeeeEEeec
Q 002086 742 KYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF-QCKDVSVAIP 790 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~-~~~~~s~~~~ 790 (969)
+||+++.+|+++++||+++.++.. ....|++| +|.++-...+
T Consensus 347 kyi~ScaDDktlrvwdl~~~~cmk-------~~~ah~hfvt~lDfh~~~p 389 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQCMK-------TLEAHEHFVTSLDFHKTAP 389 (406)
T ss_pred eEEEEEecCCcEEEEEeccceeee-------ccCCCcceeEEEecCCCCc
Confidence 999999999999999999854433 33366666 4555555443
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.6e-27 Score=258.55 Aligned_cols=241 Identities=22% Similarity=0.401 Sum_probs=212.4
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|++|+|+.+|.+||||+.||.++||+.... +
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l--------------------------------------------- 268 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-L--------------------------------------------- 268 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch-h---------------------------------------------
Confidence 457999999999999999999999999997532 1
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDD 608 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~ 608 (969)
+.+|..|.++|.++.|+. +.+|++++.|+++.|||..++.....|. |..+-..|.|- +..
T Consensus 269 ----------------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~ 330 (524)
T KOG0273|consen 269 ----------------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SND 330 (524)
T ss_pred ----------------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCc
Confidence 125667999999999998 9999999999999999999999999884 66665889997 588
Q ss_pred EEEEEECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 609 YFISGSLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
.|++++.|+.|+|+.+.... +..+.+|++.|.++.|+|.|.+|++++.|++++||.+....... ....|..
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~--------~l~~Hsk 402 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH--------DLQAHSK 402 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh--------hhhhhcc
Confidence 99999999999999997654 55677899999999999999999999999999999987665432 2377899
Q ss_pred CeEEEEEcCCCC--------ceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 688 KITGFQFSPSNP--------SEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 688 ~It~l~fspd~~--------~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.|+.+.|+|.++ ..+++++.|++|++||....++......|..+|.+++|+|+|+|||+|+.||.|.||+.+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 999999999763 478999999999999999988888888899999999999999999999999999999999
Q ss_pred CCCc
Q 002086 760 EHRN 763 (969)
Q Consensus 760 t~~~ 763 (969)
+++.
T Consensus 483 ~~~l 486 (524)
T KOG0273|consen 483 TGKL 486 (524)
T ss_pred chhe
Confidence 8443
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3.4e-29 Score=272.79 Aligned_cols=278 Identities=22% Similarity=0.309 Sum_probs=235.6
Q ss_pred cCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCC-CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCC
Q 002086 542 LSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMET-KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDA 617 (969)
Q Consensus 542 ~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg 617 (969)
+..+.+..+.||+..|.++.|.| +.+|++++.|+.|+||++-. +.|+++| +|..+|..++|++ ++..|++++.|+
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDR 280 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecce
Confidence 45566789999999999999999 78999999999999999977 8899988 8999999999999 999999999999
Q ss_pred eEEEEeCCCceEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 618 KVRIWSISDRLVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.|++||+++|++...+.....++|+.|+|++ +.|++|+.|+.|+.||++++++++. ...|.+.|..+.|-+
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe--------Yd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE--------YDRHLGAILDITFVD 352 (503)
T ss_pred eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH--------HHhhhhheeeeEEcc
Confidence 9999999999999999999999999999998 7899999999999999999986543 367889999999999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecc
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTR 775 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~ 775 (969)
.+ ..+++++.|++++||+..... ..+....+.....+|..+|+++++++-+.|+.|.||.+..+-.....+
T Consensus 353 ~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK------- 424 (503)
T KOG0282|consen 353 EG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK------- 424 (503)
T ss_pred CC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh-------
Confidence 88 899999999999999966433 223333334456689999999999999999999999977532111110
Q ss_pred cCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCC
Q 002086 776 NHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPP 855 (969)
Q Consensus 776 ~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~p 855 (969)
-.+.. ...+-..-+.|||+|.++.++..++.++.|..++-++...+..|
T Consensus 425 ~feGh-------------------------------~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 425 RFEGH-------------------------------SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred hhcce-------------------------------eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 01111 01122334568999999999999999999999999999999999
Q ss_pred CCCccccccCCC
Q 002086 856 EEELSLISHDPG 867 (969)
Q Consensus 856 ee~l~~is~hP~ 867 (969)
.+.++++.|||.
T Consensus 474 ~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 474 DQPCIGVDWHPV 485 (503)
T ss_pred CcceEEEEecCC
Confidence 999999999999
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=6e-28 Score=253.65 Aligned_cols=288 Identities=18% Similarity=0.350 Sum_probs=235.7
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.++.+.+++|.+.|.|+++.|..++|+||+.|++|+|||+.+|++..++.++...+..+.+...-......+..
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged------ 214 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED------ 214 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC------
Confidence 46678899999999999999999999999999999999999999999988887776665554432221111110
Q ss_pred cccCCCCCCCCcccccceeeecC-CCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLS-EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~-~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
...+.|++. .+.+..+.||-..|+|++.+| .+.|++|+.|.+++|||+++...+.++ +|..+|
T Consensus 215 --------------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V 280 (460)
T KOG0285|consen 215 --------------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV 280 (460)
T ss_pred --------------CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence 112344443 355678899999999999999 899999999999999999999998888 799999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
..+.+.| .+..+++|+.|++|++||++.++. .....|...|.+++.+|....|++++.| .|+-|++..+.....
T Consensus 281 ~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n--- 355 (460)
T KOG0285|consen 281 ASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN--- 355 (460)
T ss_pred eeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc---
Confidence 9999999 778899999999999999998865 4566777889999999999888888866 689999988875433
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE--EE---E---eecCCCCeEEEEEeCCCCEEEEEe
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--KF---R---GFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--~~---~---~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
..+|..-|.++..+.|+ ++++|+.+|.|.+||-..... .. . .......|.+.+|...|..|+||.
T Consensus 356 -----lsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 356 -----LSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred -----cccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 37888999999999886 999999999999999543221 11 1 122345688999999999999999
Q ss_pred CCCcEEEEEcCC
Q 002086 749 EDSQVYVWKREE 760 (969)
Q Consensus 749 ~Dg~I~IWdl~t 760 (969)
.|.+|++|.-++
T Consensus 429 adKtIk~~keDe 440 (460)
T KOG0285|consen 429 ADKTIKMYKEDE 440 (460)
T ss_pred CCcceEEEeccc
Confidence 999999998765
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=237.81 Aligned_cols=245 Identities=25% Similarity=0.489 Sum_probs=215.3
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+..|..|+++|.++.|+-||+|.+|||.|++|++|+...|.+++
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik----------------------------------- 53 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK----------------------------------- 53 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-----------------------------------
Confidence 355688999999999999999999999999999999998777665
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCI 600 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv 600 (969)
++.||..+|.+++.+. +..|++|+.|+.|.+||+.+|+.++.+ +|.+.|+.+
T Consensus 54 --------------------------tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 54 --------------------------TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV 107 (307)
T ss_pred --------------------------eecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence 6778999999999886 789999999999999999999999988 899999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
+|+. +...+++|+.|.+|++||-++. ++++.+ ...+.|.++.+. +..|++|+.||+++.||++.+.+..
T Consensus 108 ~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s----- 179 (307)
T KOG0316|consen 108 RFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS----- 179 (307)
T ss_pred EecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh-----
Confidence 9998 8889999999999999999875 344443 345778888876 5689999999999999999987642
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC--CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG--LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~--~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
.....+|+++.|++++ +..++++.|++|++.|- .+....+++|.+...-..++++.....+++|++||.|++
T Consensus 180 -----Dy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~ 253 (307)
T KOG0316|consen 180 -----DYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF 253 (307)
T ss_pred -----hhcCCcceeEEecCCC-CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEE
Confidence 3346789999999998 89999999999999994 456778889988888889999998999999999999999
Q ss_pred EEcCCCC
Q 002086 756 WKREEHR 762 (969)
Q Consensus 756 Wdl~t~~ 762 (969)
||+.+..
T Consensus 254 wdLvd~~ 260 (307)
T KOG0316|consen 254 WDLVDET 260 (307)
T ss_pred EEeccce
Confidence 9998743
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.9e-28 Score=254.43 Aligned_cols=252 Identities=22% Similarity=0.407 Sum_probs=224.1
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
|+.++++...|+||+++|..|.|+..|++|||++.|=.+++||.++..
T Consensus 136 D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~-------------------------------- 183 (406)
T KOG0295|consen 136 DTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF-------------------------------- 183 (406)
T ss_pred EccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH--------------------------------
Confidence 666777788899999999999999999999999999999999987521
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
..+..+.+|...|.++.|-| ++++++++.|.+|+.|++.++.|+++| +|.
T Consensus 184 ----------------------------~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ 235 (406)
T KOG0295|consen 184 ----------------------------RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS 235 (406)
T ss_pred ----------------------------HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch
Confidence 11225678999999999999 999999999999999999999999999 899
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccC---------------CCEEEEEeCCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPD---------------GQNALIGSHKG 658 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspd---------------g~~Lasgs~dg 658 (969)
..|..++.+. ++.++++++.|.+|++|-+.++++. .+..|..+|.|++|.|. ++++++++.|+
T Consensus 236 ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 236 EWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred HhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 9999999998 9999999999999999999998654 35567788999999772 35899999999
Q ss_pred cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe
Q 002086 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 659 ~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs 738 (969)
+|++||+.++.++... .+|...|..++|+|.| ++|+++..|+++++||..+..+......|..-++++.|+
T Consensus 315 tIk~wdv~tg~cL~tL--------~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTL--------VGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred eEEEEeccCCeEEEEE--------ecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC
Confidence 9999999999876443 7899999999999987 899999999999999988877766666778889999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 002086 739 ADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 739 pdg~~LaSgs~Dg~I~IWdl 758 (969)
.+..|++||+-|..+++|..
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999974
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3.5e-26 Score=245.76 Aligned_cols=284 Identities=26% Similarity=0.460 Sum_probs=223.1
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+++|++|.+.|++++|+|++++|++++.||.|++|++.+++.......+...+..+.+..........+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------- 71 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---------- 71 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC----------
Confidence 3567899999999999999999999999999999999988766665555444433333332211111110
Q ss_pred CCCCCCCCcccccceeeecCC-CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSE-KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCI 600 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~-k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv 600 (969)
.....+|.... +....+..|...|.++.|++ +.++++++.|+.|++||+.+++....+ .|...|.++
T Consensus 72 ----------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 72 ----------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred ----------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 11123344433 46667888999999999998 577888888999999999988887777 588999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
+|+| ++.++++++.|+.|++||++.++... +..+...+.+++|+|+++.+++++.++.|++||+..++.....
T Consensus 142 ~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~----- 215 (289)
T cd00200 142 AFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL----- 215 (289)
T ss_pred EEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-----
Confidence 9999 78888888889999999999776554 4455568999999999999999999999999999886654332
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
..+...+.++.|+|++ .++++++.|+.|++|+............+...+.+++|++++.+|++++.||.|++|+
T Consensus 216 ---~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 ---RGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---hhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 3567799999999985 6777777799999999875444444445667899999999999999999999999996
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=254.16 Aligned_cols=289 Identities=26% Similarity=0.437 Sum_probs=240.8
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+..+.|+.|++.|+-+.||++|+||||++.|.+..||++.....+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~----------------------------------- 259 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF----------------------------------- 259 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce-----------------------------------
Confidence 345678999999999999999999999999999999998632211
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVT 598 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~ 598 (969)
+..+++.||..+|..+.|+| +.+|++++.|..+.+||+.+|.+...+++. ..+.
T Consensus 260 -----------------------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~ 316 (519)
T KOG0293|consen 260 -----------------------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS 316 (519)
T ss_pred -----------------------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc
Confidence 22447889999999999999 899999999999999999999999998655 8999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
+++|.| ++..|++|+.|++|..||+.....-.+.+.. ..|.++++.+||+++++.+.|..|++|+..+.....
T Consensus 317 sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~----- 390 (519)
T KOG0293|consen 317 SCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG----- 390 (519)
T ss_pred eeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----
Confidence 999999 9999999999999999999988777666655 459999999999999999999999999987654322
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVY 754 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~ 754 (969)
......+|++++.+.++ .++++.-.+..|++||..+ ...++.++.....+..-||-- +..++++|++|+.|+
T Consensus 391 ----lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 391 ----LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred ----cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence 13456789999999998 7888999999999999775 456677777777788888865 558999999999999
Q ss_pred EEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEE
Q 002086 755 VWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQ 805 (969)
Q Consensus 755 IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~ 805 (969)
||+..+ ++.+..+..+...+.|+.|....+.....+|+++.+.+|
T Consensus 466 IWhr~s------gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 466 IWHRIS------GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred EEEccC------CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 999998 677777777777777766665554444445566666666
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2e-26 Score=250.11 Aligned_cols=245 Identities=20% Similarity=0.354 Sum_probs=214.2
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
++.+|.-|.++|++|+|+.+|+||++++.|+++.|||..+|+...
T Consensus 268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q----------------------------------- 312 (524)
T KOG0273|consen 268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ----------------------------------- 312 (524)
T ss_pred hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-----------------------------------
Confidence 345577899999999999999999999999999999998887765
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
.+.-|..+-.+|.|-.+..|++++.|+.|+|+.+....++.++ +|.+.|.+|.
T Consensus 313 --------------------------~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 313 --------------------------QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred --------------------------eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 3334666667889988899999999999999999998888877 8999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCC---------CEEEEEeCCCcEEEEEcCCCcee
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDG---------QNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg---------~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
|+| .+.+|++++.|++++||.+... ....+..|...|..+.|+|.| ..+++++.|++|++||+..+.+.
T Consensus 367 ~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 367 WNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred ECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 999 9999999999999999997655 455677788899999999964 57899999999999999999876
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
..+ ..|..+|++++|+|++ .++++|+.||.|.||+..... .++.......|..++|+.+|.+|..+-.|+
T Consensus 446 ~~f--------~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 446 HTL--------MKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred Eee--------ccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCCCEEEEEecCC
Confidence 542 6899999999999998 899999999999999965433 345555677799999999999999999999
Q ss_pred cEEEEEcC
Q 002086 752 QVYVWKRE 759 (969)
Q Consensus 752 ~I~IWdl~ 759 (969)
.+++-|+.
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99999875
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=270.85 Aligned_cols=246 Identities=23% Similarity=0.414 Sum_probs=208.1
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecc-cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ-ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~-tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+++.+|...|.+++|+||+++|++|+.|++|+|||+. .+..+
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~----------------------------------- 239 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL----------------------------------- 239 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE-----------------------------------
Confidence 566678999999999999999999999999999999993 33333
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
.++.+|...|++++|+| ++++++|+.|++|+|||+.+++++..+ +|.+.|++
T Consensus 240 --------------------------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 240 --------------------------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred --------------------------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 37889999999999999 889999999999999999999999888 89999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceE--E-EEecCCC--CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLV--V-DWTDLHE--MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~-~~~~~~~--~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
++|++ ++++|++++.|+.|+|||+.++.. + ....+.. .+++++|+|++.++++++.|+.+++||+..+......
T Consensus 294 ~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 294 LAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 99999 999999999999999999999983 3 3334433 5899999999999999999999999999988765443
Q ss_pred eeeecccccCCCC---CeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC-CCCeEEEEEeCCCCEEEEEe--
Q 002086 675 QVDFQTKKKSSTR---KITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN-TSSQISAAFNADGKYIISAS-- 748 (969)
Q Consensus 675 ~~~~~~~~~~h~~---~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~-~~~V~sl~fspdg~~LaSgs-- 748 (969)
..|.. .+.+..+++.+ .++++|+.|+.|++|+............| ...+..+.++|...++++++
T Consensus 373 --------~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~ 443 (456)
T KOG0266|consen 373 --------TGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFE 443 (456)
T ss_pred --------cccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcC
Confidence 23333 33444455655 89999999999999997765444444444 77889999999999999998
Q ss_pred CCCcEEEEEcC
Q 002086 749 EDSQVYVWKRE 759 (969)
Q Consensus 749 ~Dg~I~IWdl~ 759 (969)
.|+.|++|..+
T Consensus 444 ~d~~~~~w~~~ 454 (456)
T KOG0266|consen 444 GDGLIRLWKYD 454 (456)
T ss_pred CCceEEEecCC
Confidence 68999999865
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.5e-26 Score=234.54 Aligned_cols=283 Identities=18% Similarity=0.353 Sum_probs=217.8
Q ss_pred ceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccc---eEEEe-ecCCccCcccccccCCCCCcc---CCC
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQEC---EVMSM-SEGNLTPIHPSLCNSSDKASS---LDG 512 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg---~~l~~-~~~~~~~v~~~~~~~~~~~~~---~~g 512 (969)
+-+++.+++|.+.|+.++|+|- |..|||||.|+.||||+...+ .+... .+++...+..+.+.+....+. ++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 899999999999999999842 22222 234555555555554433221 111
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc---EE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS---CL 588 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~---~i 588 (969)
....+... ...-+.+..+.||...|.|++|++ +.+|++++.|+.|-||.+..+. |+
T Consensus 84 t~~Iw~k~--------------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 84 TVVIWKKE--------------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred eEEEeecC--------------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 11111100 012244668999999999999999 9999999999999999998554 55
Q ss_pred EEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 589 KLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 589 ~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
.++ .|...|..+.|+| ...+|++++.|.+|++|+-..+ .+..+.+|...|.+++|++.|..|++++.|++++||
T Consensus 144 aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred eeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 555 8999999999999 8999999999999999987733 245566777899999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc------eEEE-EeecCCCCeEEEE
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI------VHKF-RGFRNTSSQISAA 736 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~------~~~~-~~~~~~~~V~sl~ 736 (969)
-....-. ..|...++.+.|. + ..|++++.|+.|++|..... .... ....|...|+++.
T Consensus 223 ~~~~~~~------------~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~ 287 (312)
T KOG0645|consen 223 RLYTDLS------------GMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQ 287 (312)
T ss_pred eeccCcc------------hhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEE
Confidence 8653211 4577889999999 3 48999999999999973321 1111 2345677899999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEcC
Q 002086 737 FNAD-GKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 737 fspd-g~~LaSgs~Dg~I~IWdl~ 759 (969)
|.|. ..+|++|+.||.|++|.+.
T Consensus 288 w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCCceeecCCCceEEEEEec
Confidence 9994 6899999999999999975
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=6.6e-26 Score=228.72 Aligned_cols=290 Identities=12% Similarity=0.209 Sum_probs=223.6
Q ss_pred ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEE
Q 002086 349 NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKV 428 (969)
Q Consensus 349 ~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v 428 (969)
.+..+++++=|.++.+|.- ..+++...++.-.+.+..+.+.++...++.. +-..+.+|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa-----~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa----------------~~qhvRlyD 67 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQA-----LTGICSRTIQHPDSQVNRLEITPDKKDLAAA----------------GNQHVRLYD 67 (311)
T ss_pred CceEEEeccCcceeeeeeh-----hcCeEEEEEecCccceeeEEEcCCcchhhhc----------------cCCeeEEEE
Confidence 4566888889998888762 2333333333334667777777777654432 333444443
Q ss_pred ccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCc
Q 002086 429 RQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKAS 508 (969)
Q Consensus 429 ~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~ 508 (969)
-..+. ...+.++.+|++.|+++.|..||++++|||+||++||||+....+.
T Consensus 68 ~~S~n-------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q---------------------- 118 (311)
T KOG0315|consen 68 LNSNN-------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ---------------------- 118 (311)
T ss_pred ccCCC-------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc----------------------
Confidence 33322 1357889999999999999999999999999999999999853221
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC 587 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~ 587 (969)
....|..+|+++..+| ...|++|..+|.|++||+.+..|
T Consensus 119 ----------------------------------------R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 119 ----------------------------------------RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred ----------------------------------------hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 2234779999999999 67999999999999999999887
Q ss_pred EEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-------EEEEecCCCCEEEEEEccCCCEEEEEeCCC
Q 002086 588 LKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-------VVDWTDLHEMVTAACYTPDGQNALIGSHKG 658 (969)
Q Consensus 588 i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-------~~~~~~~~~~V~sv~fspdg~~Lasgs~dg 658 (969)
...+ .....|.++...| ++.+++.+...|..++|++-+.. +.++..|..-+..+.|+|++++|++++.|.
T Consensus 159 ~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred ccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence 7665 4567899999999 99999999999999999997643 234667888899999999999999999999
Q ss_pred cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEE
Q 002086 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAF 737 (969)
Q Consensus 659 ~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~f 737 (969)
+++||++++. +... ....+|...+..++|+.++ .+|++++.|+.+++|++...........|.....|++.
T Consensus 238 tv~iwn~~~~-~kle------~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 238 TVKIWNTDDF-FKLE------LVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eEEEEecCCc-eeeE------EEeecCCceEEeeeeccCc-cEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999987 2222 2237888999999999998 89999999999999997765544443444444555554
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=8.2e-26 Score=256.30 Aligned_cols=283 Identities=20% Similarity=0.340 Sum_probs=225.9
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
-++.||...|.+++||.|...++||+ .+.|+||+..+.++++++.... +....+.+.+........ .
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y--~l~~~Fvpgd~~Iv~G~k----------~ 433 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGY--ILASKFVPGDRYIVLGTK----------N 433 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecccc--EEEEEecCCCceEEEecc----------C
Confidence 35789999999999999988888876 5679999999999998766441 111112222211111111 0
Q ss_pred CCCCCCCcccccceeeecC-CCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-----C---cEE-----E
Q 002086 525 GKHSSPDYVHVPETVFSLS-EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-----K---SCL-----K 589 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~-~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-----~---~~i-----~ 589 (969)
+ ...+|++. ...+.....|.+.|+.++.+| +..+++||.|++|++||..- + +.+ +
T Consensus 434 G----------el~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 434 G----------ELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred C----------ceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 1 11223322 222335678999999999999 88999999999999999742 1 111 2
Q ss_pred EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 590 LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 590 ~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
++.....|.|+.++| ++.+|+++-.|.+|+||-+.+-+ .+.+++|.-+|.|+.++||++.+++|+.|.+|+||-+.-+
T Consensus 504 tLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred EEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence 346678999999999 99999999999999999999876 5678999999999999999999999999999999999988
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
.+.... .+|...|.++.|.|.. ..+++++.|+.|+-||..+.........|...|.+++.+|+|.|+++++
T Consensus 583 DCHKS~--------fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 583 DCHKSF--------FAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred hhhhhh--------hcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 875443 6899999999999976 8999999999999999877766666677788899999999999999999
Q ss_pred CCCcEEEEEcCC
Q 002086 749 EDSQVYVWKREE 760 (969)
Q Consensus 749 ~Dg~I~IWdl~t 760 (969)
.|.+|++|.-..
T Consensus 654 hD~sIRlwE~td 665 (888)
T KOG0306|consen 654 HDKSIRLWERTD 665 (888)
T ss_pred CCceeEeeeccC
Confidence 999999999765
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=7.1e-26 Score=265.69 Aligned_cols=251 Identities=31% Similarity=0.532 Sum_probs=207.2
Q ss_pred eeEeccc-ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 444 CQEIQAH-EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 444 ~~~L~gH-~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+.+.+| ...|+++.|+++|++|++++.|+.+++|+...++.
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------------------------------- 193 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------------------------------- 193 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence 3445455 88999999999999999999999999999854331
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEEC-CCCcEEEEe-ecCCCeEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDM-ETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl-~t~~~i~~~-~h~~~V~s 599 (969)
.....+.+|...|.+++|++ +.++++++.|++|+|||+ ..+.+++++ +|...|++
T Consensus 194 ----------------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~ 251 (456)
T KOG0266|consen 194 ----------------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTS 251 (456)
T ss_pred ----------------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEE
Confidence 01124578999999999999 789999999999999999 555788887 99999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee--eeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH--QLNQV 676 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~--~~~~~ 676 (969)
++|+| .++++++|+.|++|+|||+++++++. +..|...|++++|++++.+|++++.|+.|+|||+.++... ...
T Consensus 252 ~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-- 328 (456)
T KOG0266|consen 252 VAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL-- 328 (456)
T ss_pred EEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc--
Confidence 99999 77999999999999999999987665 5667789999999999999999999999999999999843 111
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEEeecCC-CCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFRGFRNT-SSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~-~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
....... .+++++|+|++ .++++++.|+.+++||+.... ..+.++... ..+.+..+++.+.++++|+.|+.|
T Consensus 329 ---~~~~~~~-~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 329 ---SGAENSA-PVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred ---cCCCCCC-ceeEEEECCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence 1111222 69999999988 899999999999999977543 344444333 234455667899999999999999
Q ss_pred EEEEcCCC
Q 002086 754 YVWKREEH 761 (969)
Q Consensus 754 ~IWdl~t~ 761 (969)
++|++.+.
T Consensus 404 ~~~~~~s~ 411 (456)
T KOG0266|consen 404 YVWDSSSG 411 (456)
T ss_pred EEEeCCcc
Confidence 99999974
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=2.2e-25 Score=279.76 Aligned_cols=253 Identities=18% Similarity=0.338 Sum_probs=202.8
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.+|.+.|++++|+|+|++||||+.|++|+||++....... .
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~----~--------------------------------- 520 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG----R--------------------------------- 520 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc----c---------------------------------
Confidence 355699999999999999999999999999999975311000 0
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
....+...+. +...|.+++|++ +.+|++++.||+|+|||+.+++.+..+ +|...|++++|
T Consensus 521 ----------------~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~ 583 (793)
T PLN00181 521 ----------------DIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDY 583 (793)
T ss_pred ----------------ccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEE
Confidence 0000111222 346789999987 689999999999999999999888777 89999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYT-PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fs-pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+|.++.+|++|+.||+|++||++++..+........+.++.|+ ++|.+|++|+.||.|++||++...... ..
T Consensus 584 ~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~-------~~ 656 (793)
T PLN00181 584 SSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL-------CT 656 (793)
T ss_pred cCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccc-------eE
Confidence 9757889999999999999999998877766666789999995 578999999999999999998764211 11
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
..+|...|.++.|.+ + ..|++++.|++|+|||.... ........|...+..++|++++.+|++|+.|+.|+|
T Consensus 657 ~~~h~~~V~~v~f~~-~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~i 734 (793)
T PLN00181 657 MIGHSKTVSYVRFVD-S-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFV 734 (793)
T ss_pred ecCCCCCEEEEEEeC-C-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEE
Confidence 257889999999974 4 68999999999999997531 122223345667889999999999999999999999
Q ss_pred EEcCCC
Q 002086 756 WKREEH 761 (969)
Q Consensus 756 Wdl~t~ 761 (969)
|+...+
T Consensus 735 w~~~~~ 740 (793)
T PLN00181 735 YHKAFP 740 (793)
T ss_pred EECCCC
Confidence 998763
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.5e-26 Score=232.76 Aligned_cols=296 Identities=17% Similarity=0.247 Sum_probs=229.1
Q ss_pred ehhhccCCCcceeeeecccc-cccccCCCCcccccccccc---cccccccccccccceeeeeEEEeeecCCccccCCCCc
Q 002086 330 EFEKSVGHSPVVKELMRREN-VNRINDSAGKFSANSYLSK---SLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPL 405 (969)
Q Consensus 330 E~~~~~GHs~~V~~l~~~~~-~~~~~t~s~d~~v~~~~~~---~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l 405 (969)
+++.+.||.++|..++..+. +..+++++.|..+..|... .|.........|.+.++.++.++ +|...+ .
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~g~~La--~--- 78 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--HGRYLA--S--- 78 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--CCcEEE--E---
Confidence 46778999999999996554 7789999999999988755 35555554446888898888887 555433 2
Q ss_pred ccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceE
Q 002086 406 LGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV 485 (969)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~ 485 (969)
+..+....|+- . .-..++++.+|.||+..|.|++|+++|+|||||+.|+.|-||.+..+..
T Consensus 79 ------------aSFD~t~~Iw~--k-----~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 79 ------------ASFDATVVIWK--K-----EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred ------------eeccceEEEee--c-----CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 11222222221 1 1234678999999999999999999999999999999999999875433
Q ss_pred EEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-
Q 002086 486 MSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR- 564 (969)
Q Consensus 486 l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~- 564 (969)
.. ....|++|+..|..+.|+|
T Consensus 140 fe----------------------------------------------------------c~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 140 FE----------------------------------------------------------CIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EE----------------------------------------------------------EEeeeccccccccEEEEcCC
Confidence 22 1236889999999999999
Q ss_pred CcEEEEEeCCCcEEEEECCC---CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE
Q 002086 565 SHLLLSSSMDKTVRLWDMET---KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t---~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~ 640 (969)
..+|+++|+|.+|++|+-.. -+|.+++ +|...|.+++|++ .+..|++++.|++|+||-....- ...|...++
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y 237 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALY 237 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccCc---chhcccceE
Confidence 89999999999999998772 3466666 7999999999999 89999999999999999866321 123457788
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
.+.|. ...|++++.|+.|++|............. +......|...|++++|.|....+|++++.||.|++|.+
T Consensus 238 ~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l-~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 238 DVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL-LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eeeec--ccceEeccCCCEEEEEEecCCCCCchHHH-HHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 99998 45899999999999998774322111111 122336788899999999976689999999999999974
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-25 Score=257.56 Aligned_cols=257 Identities=25% Similarity=0.448 Sum_probs=221.6
Q ss_pred cccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 434 ~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
.+||..=..++..|..|.|+|.+++|+|++.++++||.|-.|+||+..+.+++.
T Consensus 34 QlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf-------------------------- 87 (1202)
T KOG0292|consen 34 QLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF-------------------------- 87 (1202)
T ss_pred eeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh--------------------------
Confidence 467888788899999999999999999999999999999999999998765543
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF- 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~- 591 (969)
++.||-+-|..+.|++ -..++++|.|.+|+||++++++|+.++
T Consensus 88 -----------------------------------tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 88 -----------------------------------TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred -----------------------------------hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 6789999999999998 789999999999999999999999988
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----------------------------eEE--EEecCCCCEEE
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----------------------------LVV--DWTDLHEMVTA 641 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----------------------------~~~--~~~~~~~~V~s 641 (969)
+|+..|.|..|+| ..++++++|.|.+|+|||+..- .++ .+.+|...|+-
T Consensus 133 GHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred cCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 9999999999999 8999999999999999998431 011 24567788999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE
Q 002086 642 ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721 (969)
Q Consensus 642 v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~ 721 (969)
++|+|.-..|++|+.|..|++|.+...+..... ...+|...|+++.|+|.. .++++.+.|++|+|||+.+...
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD------tcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD------TCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeeh------hhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccc
Confidence 999999999999999999999999876654332 238999999999999976 7999999999999999876555
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.............++-+|..++++.|- |+-+.+|.++.
T Consensus 285 v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 285 VQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLER 322 (1202)
T ss_pred eeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcc
Confidence 555445566788999999998777665 77788999874
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.7e-26 Score=262.06 Aligned_cols=291 Identities=17% Similarity=0.292 Sum_probs=241.1
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
|..-+..|.+++|+|...+++++-..|.|.+||..-+.++.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------------------------------------- 45 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------------------------------------- 45 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---------------------------------------
Confidence 44567789999999999999999999999999988554433
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEec
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp 604 (969)
.|..|.++|..++|+| ..+|++|+.|..|++|+..+.+|+.++ +|-+.|..+.|++
T Consensus 46 ----------------------rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 46 ----------------------RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred ----------------------hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC
Confidence 5778999999999999 899999999999999999999999876 9999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee--------
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ-------- 675 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~-------- 675 (969)
.-..|+++|.|.+|+||+..++.++. +.+|...|.|..|+|....+++++-|.+|+|||+...+......
T Consensus 104 -eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 -EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred -CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 88999999999999999999987664 66788999999999999999999999999999997644322111
Q ss_pred -------------eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEEeecCCCCeEEEEEeCC
Q 002086 676 -------------VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 676 -------------~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~~~V~sl~fspd 740 (969)
.-++....+|...|+-++|+|.. .++++|+.|..|++|...... ..-....|...|.++-|+|.
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH 261 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc
Confidence 11233457899999999999988 699999999999999965432 22234456778999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcc
Q 002086 741 GKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKK 808 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~ 808 (969)
..++++.|+|++|+|||+... ..+..+.+.++.|.|.+. ...-+...+|.+.+..|+.+.
T Consensus 262 q~lIlSnsEDksirVwDm~kR------t~v~tfrrendRFW~laa--hP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKR------TSVQTFRRENDRFWILAA--HPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred cceeEecCCCccEEEEecccc------cceeeeeccCCeEEEEEe--cCCcceeeeecCCceEEEEEc
Confidence 999999999999999999874 344555677787764332 223566678889999998543
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=236.65 Aligned_cols=324 Identities=15% Similarity=0.190 Sum_probs=250.6
Q ss_pred ccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEE
Q 002086 380 LLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKF 459 (969)
Q Consensus 380 ~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~f 459 (969)
.+..+....|+++++|+.....+ .+++...+ +|++.++....++.+|.+.|+|+.|
T Consensus 59 tF~~H~~svFavsl~P~~~l~aT---------------GGgDD~Af---------lW~~~~ge~~~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVAT---------------GGGDDLAF---------LWDISTGEFAGELTGHKDSVTCCSF 114 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEe---------------cCCCceEE---------EEEccCCcceeEecCCCCceEEEEE
Confidence 44455566788877774322111 22333333 4466667778889999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccccccee
Q 002086 460 SLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETV 539 (969)
Q Consensus 460 SpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 539 (969)
+.||.|||||+.+|.|+||+..++.....+......+..+.+.+....+ +.|..... .=.
T Consensus 115 shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~il-lAG~~DGs-------------------vWm 174 (399)
T KOG0296|consen 115 SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL-LAGSTDGS-------------------VWM 174 (399)
T ss_pred ccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEE-EeecCCCc-------------------EEE
Confidence 9999999999999999999999998877665444444444444432222 11111110 113
Q ss_pred eecCC-CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEEC
Q 002086 540 FSLSE-KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSL 615 (969)
Q Consensus 540 ~~~~~-k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~ 615 (969)
|.+.. ...+.+.||+.++++=.|.| ++.++++..||+|++||..+++++..+. ......++.++. .+..++.|+.
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~ 253 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNS 253 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccC
Confidence 33444 45668899999999999999 9999999999999999999999988773 345678899988 8899999999
Q ss_pred CCeEEEEeCCCceEEEEecC---------CCCEEEEEE---ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 616 DAKVRIWSISDRLVVDWTDL---------HEMVTAACY---TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 616 Dg~I~IWDl~~~~~~~~~~~---------~~~V~sv~f---spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
++.+++-...+++++..... ...+.++.+ +..=.+.|+|+-||+|.|||+...++... -
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~---------c 324 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI---------C 324 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee---------c
Confidence 99999999999988765542 233444444 44556789999999999999988765433 4
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.|...|+.+.|-++ .+|++++.+|.|+.||.+....++....|...|.+++++|++++++|++.|++.+||++.
T Consensus 325 ~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 325 EHEDGVTKLKWLNT--DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCceEEEEEcCc--chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 57888999999983 699999999999999999999888888999999999999999999999999999999875
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=2e-27 Score=248.44 Aligned_cols=245 Identities=22% Similarity=0.422 Sum_probs=208.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+||...+.++..|.||+|.|.|+.|. .+.|++|+.|.+|+|||+++|+.+.
T Consensus 221 iWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~--------------------------- 271 (499)
T KOG0281|consen 221 IWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN--------------------------- 271 (499)
T ss_pred EeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh---------------------------
Confidence 45777788999999999999999996 5699999999999999999887655
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEE----
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKL---- 590 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~---- 590 (969)
++.+|...|..+.|+. +++++++.|.+|.+||+....-+..
T Consensus 272 ----------------------------------tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVL 316 (499)
T KOG0281|consen 272 ----------------------------------TLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVL 316 (499)
T ss_pred ----------------------------------HHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHH
Confidence 5667999999999985 8999999999999999987764332
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.+|...|+.+.|+ ..++++++.|.+|++|++.+++.+. +.+|...|.|+.+ .|+++++|+.|.+|++||+..+.
T Consensus 317 vGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 317 VGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred hhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccH
Confidence 2899999999995 5799999999999999999998775 4567788888877 57899999999999999999998
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---------eEEEEeecCCCCeEEEEEeCC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---------VHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---------~~~~~~~~~~~~V~sl~fspd 740 (969)
++... .+|..-|.++.|.. ..+++|..||+|++||.... .+......|.+.|..+.| |
T Consensus 392 cLRvL--------eGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D 458 (499)
T KOG0281|consen 392 CLRVL--------EGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--D 458 (499)
T ss_pred HHHHH--------hchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--c
Confidence 76543 78999999999975 68999999999999995432 223344567788999988 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 002086 741 GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
...+++++.|.+|.|||+.++
T Consensus 459 ~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 459 EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ceEEEeccCCCeEEEEEcCCC
Confidence 568999999999999999874
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-25 Score=226.79 Aligned_cols=244 Identities=25% Similarity=0.367 Sum_probs=210.7
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
|+||+.+|+-|+++.+|.+|+||+.|.++.||-..+|+.+.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--------------------------------------- 46 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--------------------------------------- 46 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---------------------------------------
Confidence 78999999999999999999999999999999887777765
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM 605 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~ 605 (969)
++.||++.|+|+.... ...++||+.|.+++|||+.+|+++..+....+|..+.|++
T Consensus 47 ----------------------ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~- 103 (327)
T KOG0643|consen 47 ----------------------TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF- 103 (327)
T ss_pred ----------------------eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-
Confidence 6778999999999987 7999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEC-----CCeEEEEeCCC-------ce-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 606 DDDYFISGSL-----DAKVRIWSISD-------RL-VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 606 ~~~~L~sgs~-----Dg~I~IWDl~~-------~~-~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
++++++.+.. .+.|.++|++. .+ .+.+..+...++.+-|.|-+++|++|..+|.|.+||+++++...
T Consensus 104 ~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 104 GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELV 183 (327)
T ss_pred CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceee
Confidence 8888877654 36799999973 33 55666777899999999999999999999999999999986532
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EE----------------------------
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HK---------------------------- 722 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~---------------------------- 722 (969)
.....|...|+.++++++. .++++++.|.+-++||...+. ..
T Consensus 184 -------~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 184 -------DSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred -------echhhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceee
Confidence 2225688899999999998 899999999999999843211 00
Q ss_pred -----------E--------------EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 723 -----------F--------------RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 -----------~--------------~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+ ....|-++|++++|+|+|+..++|++||.|++.-++.
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0 1124568899999999999999999999999987765
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.5e-24 Score=272.14 Aligned_cols=244 Identities=15% Similarity=0.209 Sum_probs=200.3
Q ss_pred cccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+...|.+++|++ ++.+||+++.||+|+|||+.+++.+.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~----------------------------------------- 569 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT----------------------------------------- 569 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE-----------------------------------------
Confidence 456899999987 57899999999999999998765543
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~ 606 (969)
.+.+|.+.|++++|++ +.+|++|+.|++|++||+.++.++..+.+...|.++.|++.+
T Consensus 570 --------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 570 --------------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred --------------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 5668999999999996 579999999999999999999999888777899999997657
Q ss_pred CCEEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 607 DDYFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
+.+|++|+.||.|++||++... ...+..|...|.++.|. ++.+|++++.|++|+|||+........ ........+
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~--~~~l~~~~g 706 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN--ETPLHSFMG 706 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC--CcceEEEcC
Confidence 8999999999999999998764 34566788899999997 678999999999999999975321000 001112357
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE--EE-----------eecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK--FR-----------GFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~--~~-----------~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
|...+..+.|+|++ .+|++|+.|+.|++|+....... +. ...+...|.+++|+|++.+|++|+.||
T Consensus 707 h~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 707 HTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred CCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 88889999999987 79999999999999995432211 11 122345689999999999999999999
Q ss_pred cEEEEEc
Q 002086 752 QVYVWKR 758 (969)
Q Consensus 752 ~I~IWdl 758 (969)
.|+||++
T Consensus 786 ~I~i~~~ 792 (793)
T PLN00181 786 NIKILEM 792 (793)
T ss_pred cEEEEec
Confidence 9999996
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.3e-26 Score=242.77 Aligned_cols=301 Identities=19% Similarity=0.278 Sum_probs=241.7
Q ss_pred eeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCC
Q 002086 325 QLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNP 404 (969)
Q Consensus 325 ~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~ 404 (969)
++..+|.+.+..|+.-|.-+.++.++..+++++.|.+...|..
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v------------------------------------- 253 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIV------------------------------------- 253 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEE-------------------------------------
Confidence 5556677778888888888888888888888877776554430
Q ss_pred cccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce
Q 002086 405 LLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE 484 (969)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~ 484 (969)
+. +. .+++.++|.+|..+|.-+.||||.+||++|+.|..+++||+.+|+
T Consensus 254 -----------------------~~-------d~-~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 254 -----------------------VY-------DV-HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred -----------------------ec-------Cc-ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 00 11 145667899999999999999999999999999999999999988
Q ss_pred EEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC
Q 002086 485 VMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR 564 (969)
Q Consensus 485 ~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~ 564 (969)
....+. .+|...+.+++|.|
T Consensus 303 ~~~~y~------------------------------------------------------------~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 303 LRHLYP------------------------------------------------------------SGLGFSVSSCAWCP 322 (519)
T ss_pred hhhhcc------------------------------------------------------------cCcCCCcceeEEcc
Confidence 765322 12557789999999
Q ss_pred -CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEE
Q 002086 565 -SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAA 642 (969)
Q Consensus 565 -~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv 642 (969)
+..+++|+.|++|..||+.....-.--+ ....|.+++..+ ++.++++.+.|..|++|+..+...+.......+|+++
T Consensus 323 Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~ 401 (519)
T KOG0293|consen 323 DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSF 401 (519)
T ss_pred CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEE
Confidence 8899999999999999998654322212 235699999999 9999999999999999999888777777788899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
+++.+++++++.-.+..|++||+...+++.... .......|..-+|--.+..++++|+.|+.|+||+.......
T Consensus 402 ~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~------Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQEIHLWDLEENKLVRKYF------GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred EEcCCCcEEEEEcccCeeEEeecchhhHHHHhh------cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 999999999999999999999999766543321 12233456666777666689999999999999997766655
Q ss_pred EEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 002086 723 FRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t 760 (969)
....+|...|++++|+| +-.++|+|+.||+|+||....
T Consensus 476 ~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 476 AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 55666778899999999 557899999999999999875
No 48
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.6e-25 Score=224.89 Aligned_cols=249 Identities=22% Similarity=0.338 Sum_probs=223.4
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+++++|.+.|.+++|+.+|..|++|+.|++++||+++.......
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------------ 57 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------------ 57 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------------
Confidence 67889999999999999999999999999999999986532221
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQF 602 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~f 602 (969)
....+|.+.|-.++|+| .+.|++++.|++|++||++.++++......+.-.-+.|
T Consensus 58 -----------------------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~w 114 (313)
T KOG1407|consen 58 -----------------------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITW 114 (313)
T ss_pred -----------------------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEE
Confidence 14568999999999998 78999999999999999999999999988887788899
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
+| ++.++++++.|..|.+.|.++.+++........+..++|+-++.+++.....|+|.|......+.++. .
T Consensus 115 sp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~s--------i 185 (313)
T KOG1407|consen 115 SP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQS--------I 185 (313)
T ss_pred cC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccc--------c
Confidence 99 99999999999999999999999998888888899999998888888888889999998886665433 3
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
..|.....||.|+|+| .++++|+.|..+-+||+.++++.-....+.-+|..++|+.||++||+|++|-.|-|=+++++.
T Consensus 186 ~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred ccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 7899999999999999 899999999999999999988877777788899999999999999999999999999999853
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=9.7e-26 Score=233.65 Aligned_cols=255 Identities=25% Similarity=0.435 Sum_probs=218.2
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
|....+-|..|||||+||++|+.||.|.||+..+|++-+.++-
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY------------------------------------- 253 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY------------------------------------- 253 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhh-------------------------------------
Confidence 4566788999999999999999999999999998876542210
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~ 605 (969)
+....|.-|...|.|+.|+. ..+|++|+.||.|++|.+.+|.|++.| .|+..|+|+.|+.
T Consensus 254 ----------------QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr- 316 (508)
T KOG0275|consen 254 ----------------QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR- 316 (508)
T ss_pred ----------------hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-
Confidence 01113455889999999998 789999999999999999999999998 7999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
++..+++++.|.+++|--+.+|+++. +.+|...|+.+.|.++|.++++++.||+|++|+..+.++...+.. .+
T Consensus 317 D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~------~~ 390 (508)
T KOG0275|consen 317 DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP------LG 390 (508)
T ss_pred CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC------CC
Confidence 99999999999999999999998765 667888999999999999999999999999999999888665432 45
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...+|..+-.-|.++..++++...++|+|.++.. .+..+. +....+...+++.+|.|.++.+.++|+.++.|.+.+++
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 6778999999999999999999999999999654 334343 34455667889999999999999999999999998854
Q ss_pred c
Q 002086 763 N 763 (969)
Q Consensus 763 ~ 763 (969)
.
T Consensus 471 L 471 (508)
T KOG0275|consen 471 L 471 (508)
T ss_pred e
Confidence 3
No 50
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.4e-24 Score=229.74 Aligned_cols=268 Identities=18% Similarity=0.300 Sum_probs=217.3
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.+|..|++.|++++.+|+.+++||||.|....||++.+|+.+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~------------------------------------ 100 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG------------------------------------ 100 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee------------------------------------
Confidence 56789999999999999999999999999999999999876433
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
.+.+|.+.|+++.|+. +.+|+||..+|.|+||+..++.....+ ..-..|.-+.
T Consensus 101 -------------------------eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 101 -------------------------ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred -------------------------EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence 6778999999999998 899999999999999999999887776 4677899999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCC-ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-----
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ----- 675 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~----- 675 (969)
|+| ....|++|+.||.|.+|.+.+ +.+..+.+|..++++-.|.|+|+.++++..||+|++|+..+++......
T Consensus 156 WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~ 234 (399)
T KOG0296|consen 156 WHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGL 234 (399)
T ss_pred ecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccC
Confidence 999 999999999999999999998 5566677888999999999999999999999999999999987654322
Q ss_pred -eee-----------------------------c--------ccccCCCCCeEEEEEcCCCC--ceEEEEeCCCcEEEEe
Q 002086 676 -VDF-----------------------------Q--------TKKKSSTRKITGFQFSPSNP--SEVLVTSADSRIRILD 715 (969)
Q Consensus 676 -~~~-----------------------------~--------~~~~~h~~~It~l~fspd~~--~~l~sgs~Dg~I~IwD 715 (969)
... . .....+...+.++.+.|... .+.++|+.||+|.|||
T Consensus 235 ~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD 314 (399)
T KOG0296|consen 235 ELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYD 314 (399)
T ss_pred cCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEe
Confidence 000 0 00012223334444444221 3678889999999999
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCcee
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQ 781 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~ 781 (969)
......... ..|...|+.+.|-+ ..+|++++.||.|++||.++ |+....+..+..++.
T Consensus 315 ~a~~~~R~~-c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt------G~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 315 LAASTLRHI-CEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART------GQLKFTYTGHQMGIL 372 (399)
T ss_pred cccchhhee-ccCCCceEEEEEcC-cchheeeccCceEEeeeccc------cceEEEEecCchhee
Confidence 765443332 34677799999998 78999999999999999999 555566666666654
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=227.21 Aligned_cols=242 Identities=20% Similarity=0.341 Sum_probs=205.1
Q ss_pred cccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
-.+.++.++|++.. ..+++++.||.++|||+.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~----------------------------------------------- 91 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLT----------------------------------------------- 91 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccC-----------------------------------------------
Confidence 47889999999954 588999999999999953
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
...+|+..++.|..+|.++.|++ ...++++|.|++|++|+...++.+.+| +|...|...+|+|.
T Consensus 92 -------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 92 -------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH 158 (311)
T ss_pred -------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC
Confidence 13346678899999999999998 678899999999999999999999988 89999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCC-ceEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDDYFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
..++|++++.|+++++||++. ++.+.+..|...|.++.|+. +...|++|+.|+.|++||++..+.. .....
T Consensus 159 ~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p-------l~eL~ 231 (311)
T KOG0277|consen 159 IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP-------LFELN 231 (311)
T ss_pred CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc-------ceeec
Confidence 999999999999999999975 56666777888999999998 4567889999999999999987642 22337
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEc
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl 758 (969)
+|.-.|..++|+|....+|++++.|-+++|||....- ..-....|..-+..+.|++ ++.++|+++.|+.++||+-
T Consensus 232 gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 232 GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 8999999999999888899999999999999965321 1112224555677889988 7789999999999999983
No 52
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.3e-23 Score=229.40 Aligned_cols=415 Identities=18% Similarity=0.204 Sum_probs=279.2
Q ss_pred CCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeee-cccccccccCCCCcccccccccccccccccc-
Q 002086 299 TGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELM-RRENVNRINDSAGKFSANSYLSKSLRMSKRR- 376 (969)
Q Consensus 299 ~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~-~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~- 376 (969)
+|..+++.-.......+.||||+.+..+. |+ .--+..|..+. .|.++..+++.++ ..+.||....--+.+..
T Consensus 166 ~~G~~l~~vD~s~~h~lSVWdWqk~~~~~--~v---k~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~ 239 (626)
T KOG2106|consen 166 NGGSLLCAVDDSNPHMLSVWDWQKKAKLG--PV---KTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQG 239 (626)
T ss_pred CCCceEEEecCCCccccchhhchhhhccC--cc---eeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEee
Confidence 44444443333345567899999998854 22 33356667777 6889999999854 44788864443333331
Q ss_pred --cccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCE
Q 002086 377 --GAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSI 454 (969)
Q Consensus 377 --~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I 454 (969)
.....+++.++.|.. .||... ++....+.+|.. ...+..++..+|.+.|
T Consensus 240 ~fek~ekk~Vl~v~F~e--ngdviT--------------------gDS~G~i~Iw~~-------~~~~~~k~~~aH~ggv 290 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLE--NGDVIT--------------------GDSGGNILIWSK-------GTNRISKQVHAHDGGV 290 (626)
T ss_pred ccccccceEEEEEEEcC--CCCEEe--------------------ecCCceEEEEeC-------CCceEEeEeeecCCce
Confidence 112236666666654 344333 223333333322 3344555556999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe--ecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 455 WTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM--SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 455 ~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~--~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.+|+...+|.+|- |+.|+.|..|| ..-+.++. +.....++..+.....+ .+.|........
T Consensus 291 ~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d---i~vGTtrN~iL~------------ 353 (626)
T KOG2106|consen 291 FSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD---ILVGTTRNFILQ------------ 353 (626)
T ss_pred EEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCCCc---EEEeeccceEEE------------
Confidence 9999999997555 99999999999 32222221 22222222222222111 111111111000
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~ 611 (969)
=.+.........+|....+.++.+| .++++|++.|++|++|+ ..+.+.......++.|+.|+| .+ .++
T Consensus 354 -------Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va 422 (626)
T KOG2106|consen 354 -------GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVA 422 (626)
T ss_pred -------eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEE
Confidence 0122233346789999999999999 88999999999999999 666777777889999999999 66 999
Q ss_pred EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEE
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~ 691 (969)
.|...|...+.|.++..++.......+++++.|+|+|.+||+|+.|+.|+||-+......... ..+.+..+|+.
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r------~~k~~gs~ith 496 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR------VGKCSGSPITH 496 (626)
T ss_pred EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE------eeeecCceeEE
Confidence 999999999999999888887777899999999999999999999999999999876543221 11334489999
Q ss_pred EEEcCCCCceEEEEeCCCcEEEEeCCcce--------------EE--EE--eecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 692 FQFSPSNPSEVLVTSADSRIRILDGLDIV--------------HK--FR--GFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 692 l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--------------~~--~~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
+.|++|+ +++.+-+.|-.|..|...... ++ |. +-.+...|..++-+.+.++||+|.+.|+|
T Consensus 497 LDwS~Ds-~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v 575 (626)
T KOG2106|consen 497 LDWSSDS-QFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV 575 (626)
T ss_pred eeecCCC-ceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE
Confidence 9999998 899999999999999632211 01 11 11234455667778888999999999999
Q ss_pred EEEEcCCCCccCCCceeEEecccCCceeeeeeE
Q 002086 754 YVWKREEHRNASTGKRAIITTRNHEHFQCKDVS 786 (969)
Q Consensus 754 ~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s 786 (969)
++|...-- +..........+..++.|+++.
T Consensus 576 ~lf~yPc~---s~rA~~he~~ghs~~vt~V~Fl 605 (626)
T KOG2106|consen 576 HLFSYPCS---SPRAPSHEYGGHSSHVTNVAFL 605 (626)
T ss_pred EEEccccC---CCcccceeeccccceeEEEEEe
Confidence 99987531 1122455566666676654444
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=3e-26 Score=239.60 Aligned_cols=233 Identities=20% Similarity=0.351 Sum_probs=196.1
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
....|+|+.+. ...+++|..|++|+|||..+.+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~------------------------------------------ 231 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK------------------------------------------ 231 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH------------------------------------------
Confidence 45789999985 5579999999999999988654433
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~ 608 (969)
.+.||++.|.|+.|.. ..|++|+.|.+|+|||+++++++.++ .|...|..+.|+ +.
T Consensus 232 -------------------~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng 288 (499)
T KOG0281|consen 232 -------------------ILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NG 288 (499)
T ss_pred -------------------hhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---CC
Confidence 6789999999999985 69999999999999999999999876 899999999995 68
Q ss_pred EEEEEECCCeEEEEeCCCceEE----EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 609 YFISGSLDAKVRIWSISDRLVV----DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~----~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
++++++.|.+|.+||+....-. .+.+|...|+.+.|+ .+++++++.|.+|++|++.+.+.+.. ..+
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt--------l~g 358 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT--------LNG 358 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehh--------hhc
Confidence 9999999999999999775422 356788899999996 46999999999999999999886544 378
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
|...|.|+++.. .++++|+.|.+|++||.....+.-...+|..-|.++.| |.+.+++|+.||+|+|||+.....+
T Consensus 359 HkRGIAClQYr~---rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 359 HKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred ccccceehhccC---eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCC
Confidence 999999998863 79999999999999997654433333345566888888 5678999999999999999886544
No 54
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=237.83 Aligned_cols=240 Identities=15% Similarity=0.259 Sum_probs=207.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-+-.|..+.|.|+|+.|+||+..|.+.||+......
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------------------------------------------- 130 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------------------------------------------- 130 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH--------------------------------------------
Confidence 356899999999999999999999999999642100
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeec-CCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAH-NDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-~~~V~sv~fsp~~~ 607 (969)
...++.|...|.++.|+. +..+++|+.+|.|++|+...........| ...|++++|+| ++
T Consensus 131 -----------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nD 192 (464)
T KOG0284|consen 131 -----------------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-ND 192 (464)
T ss_pred -----------------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-CC
Confidence 014578999999999998 89999999999999999987666555554 59999999999 99
Q ss_pred CEEEEEECCCeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 608 DYFISGSLDAKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
..|++++.||+|+|||....+. ..+.+|.-.|.++.|+|.-.+|++|+.|..|++||.+++.++... ..|.
T Consensus 193 skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl--------h~HK 264 (464)
T KOG0284|consen 193 SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL--------HGHK 264 (464)
T ss_pred ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh--------hhcc
Confidence 9999999999999999987543 345678888999999999999999999999999999999876443 6789
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t 760 (969)
..|..+.|+|++ .+|++++.|..++++|++.....+....|...++++.|+| ...+|.+|+.||.|..|.+..
T Consensus 265 ntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 265 NTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred ceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc
Confidence 999999999998 8999999999999999886555555556777899999999 567899999999999999984
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-23 Score=219.14 Aligned_cols=255 Identities=24% Similarity=0.448 Sum_probs=205.7
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.++..+.|+.-.+.|++|.|+++|.+|++++.|.+|+|||..+++.+.+
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t------------------------------- 51 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT------------------------------- 51 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-------------------------------
Confidence 3445556666788999999999999999999999999999998877663
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEECCCCcEEEEe-ecCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWDMETKSCLKLF-AHND 595 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWDl~t~~~i~~~-~h~~ 595 (969)
+..+...|..++|.. ...++.++. |.+|+..++.+.+.++.| +|..
T Consensus 52 ------------------------------i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~ 101 (311)
T KOG1446|consen 52 ------------------------------INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKK 101 (311)
T ss_pred ------------------------------eecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCc
Confidence 333445566777765 666666665 899999999999999999 8999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
.|.+|+.+| -++.|++++.|++|++||++..++...+.... -..++|.|+|-++|++...+.|++||++....-+...
T Consensus 102 ~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t 179 (311)
T KOG1446|consen 102 RVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT 179 (311)
T ss_pred eEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence 999999999 67999999999999999999777666555443 3467999999999999998899999999764433222
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCe-EEEEEeCCCCEEEEEeCCCc
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQ-ISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V-~sl~fspdg~~LaSgs~Dg~ 752 (969)
+.+. .......+.+.|+|+| +.++.+...+.+++.|... ....+..+.....+ ...+|+||++++++|+.||+
T Consensus 180 f~i~---~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 180 FSIT---DNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT 255 (311)
T ss_pred EccC---CCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc
Confidence 2221 2556789999999999 7999999999999999554 44555555444422 47889999999999999999
Q ss_pred EEEEEcCCC
Q 002086 753 VYVWKREEH 761 (969)
Q Consensus 753 I~IWdl~t~ 761 (969)
|++|+++++
T Consensus 256 i~vw~~~tg 264 (311)
T KOG1446|consen 256 IHVWNLETG 264 (311)
T ss_pred EEEEEcCCC
Confidence 999999883
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=2.1e-24 Score=229.32 Aligned_cols=272 Identities=18% Similarity=0.298 Sum_probs=225.5
Q ss_pred CcceEEEccCCCc--ccccccceeeeEecccccCEEEEEEeCCC---CEEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 422 SNHWVKVRQSGKS--YKDLSALHLCQEIQAHEGSIWTIKFSLDA---RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 422 ~~~~v~v~~~~~~--l~dl~~~~l~~~L~gH~~~I~~l~fSpDg---~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
...||..+.+... +|+++ ++...++.||.++|.+++|.-.. ..|+++|.|.++++|.++.++....
T Consensus 114 ~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~-------- 184 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK-------- 184 (423)
T ss_pred cCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh--------
Confidence 3667777666554 44554 67888899999999988886533 3699999999999999886554321
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK 575 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg 575 (969)
.+..-.||...|-++...+ +..+++|+.|.
T Consensus 185 -------------------------------------------------~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 185 -------------------------------------------------ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred -------------------------------------------------HHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 1112348999999999887 89999999999
Q ss_pred cEEEEECCC-------------------------CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE
Q 002086 576 TVRLWDMET-------------------------KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 576 tV~IWDl~t-------------------------~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
+|+||+..+ +.++.++ +|..+|.+|.|.+ ...+++++.|.+|+.||+.++..
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccc
Confidence 999999421 1122233 8999999999985 88999999999999999999999
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 630 VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 630 ~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
.........++++.++|..++|++|+.|..|++||.+++.-.. ......+|...|.++.|+|.+...|++++.|+
T Consensus 294 ~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-----v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 294 KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-----VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce-----eEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 9888888999999999999999999999999999999874321 12233789999999999999999999999999
Q ss_pred cEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 710 RIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 710 ~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
++++||.+... ..+....|...|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus 369 t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999998766 677788889999999998 56799999999999998764
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=242.68 Aligned_cols=249 Identities=16% Similarity=0.305 Sum_probs=213.7
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
..++|..|...|.++.|+|...+++++-..|.|.||+.++...++.+
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf--------------------------------- 51 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF--------------------------------- 51 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee---------------------------------
Confidence 34557779999999999999999999999999999999987766533
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCI 600 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv 600 (969)
.-..-+|.+..|-. .+.+++|+.|..|+||+..+++.++.| +|.+.|.||
T Consensus 52 ----------------------------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~i 103 (794)
T KOG0276|consen 52 ----------------------------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSI 103 (794)
T ss_pred ----------------------------eecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeee
Confidence 23445677788876 799999999999999999999999999 899999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
+.+| ...++++++.|-+|++||...+ ....+.+|...|.+++|.| |.+.+++++-|++|+||.+.......+
T Consensus 104 avHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT---- 178 (794)
T KOG0276|consen 104 AVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT---- 178 (794)
T ss_pred eecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee----
Confidence 9999 8899999999999999999886 3456778889999999999 567999999999999999987664332
Q ss_pred ecccccCCCCCeEEEEEcCCC-CceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSN-PSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~-~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
..+|...|.|+.|-+.+ ..+|++|+.|.+|+|||..+ ++.++.+| ...|..++|+|.-..++||++||+|+
T Consensus 179 ----l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~fhp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 179 ----LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVFFHPELPIIISGSEDGTVR 252 (794)
T ss_pred ----eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEEecCCCcEEEEecCCccEE
Confidence 27899999999998854 34899999999999999665 45555554 55688999999999999999999999
Q ss_pred EEEcCCCCc
Q 002086 755 VWKREEHRN 763 (969)
Q Consensus 755 IWdl~t~~~ 763 (969)
||.-.+-+.
T Consensus 253 iWhs~Ty~l 261 (794)
T KOG0276|consen 253 IWNSKTYKL 261 (794)
T ss_pred EecCcceeh
Confidence 999887543
No 58
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=228.71 Aligned_cols=214 Identities=19% Similarity=0.274 Sum_probs=193.5
Q ss_pred eeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECC
Q 002086 539 VFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 539 v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
-|....+....+.||.+.|.|+++.| +..|++|+.|++|+|||+.++++..++ +|...|..+++++ ...|+++++.|
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~ged 214 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGED 214 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCC
Confidence 45556677788999999999999999 899999999999999999999998888 7999999999999 88999999999
Q ss_pred CeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 617 AKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 617 g~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
+.|+.||+...+++ .+.+|-..|.|++.+|.-..|++|+.|.+++|||+++...+... .+|..+|..+.+.
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l--------~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL--------SGHTNPVASVMCQ 286 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe--------cCCCCcceeEEee
Confidence 99999999988765 46778899999999999999999999999999999988755443 7899999999999
Q ss_pred CCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 696 PSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 696 pd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
|.+ ..+++|+.|++|++||............|...|.+++.+|....+|+++.| .|+.|++..+..
T Consensus 287 ~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f 352 (460)
T KOG0285|consen 287 PTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF 352 (460)
T ss_pred cCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccch
Confidence 988 589999999999999998888777888889999999999999999999977 699999998543
No 59
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.6e-24 Score=237.70 Aligned_cols=251 Identities=21% Similarity=0.317 Sum_probs=219.8
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|+.++..+++.+.-..-+|.+++|-+..+++++|+.|..|+||+..+++.+.
T Consensus 39 IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--------------------------- 91 (794)
T KOG0276|consen 39 IWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--------------------------- 91 (794)
T ss_pred EEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE---------------------------
Confidence 45777778888999999999999999999999999999999999999887765
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC-cEEEEe-
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK-SCLKLF- 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~-~~i~~~- 591 (969)
.|..|.+-|.+++.+| ..+++|+|.|-+|++||.+.+ .|.++|
T Consensus 92 ----------------------------------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 92 ----------------------------------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred ----------------------------------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 6778999999999999 899999999999999999875 567777
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCC
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDG--QNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg--~~Lasgs~dg~I~IwDl~~~ 668 (969)
+|+..|.+|+|+|.+.+.|++++.|++|+||.+.... ...+.+|...|+|++|-+.| .+|++|+.|.+|+|||..+.
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 8999999999999999999999999999999998764 45677889999999999865 59999999999999999998
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
.+++.. .+|...|..+.|+|.- ..+++|+.||+++||+..+....-...-....+.+++-.+.+..++.|.
T Consensus 218 ~CV~TL--------eGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 218 SCVQTL--------EGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred HHHHHh--------hcccccceEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 876543 7899999999999987 6999999999999999776554444444566789999889888889988
Q ss_pred CCCcEEE
Q 002086 749 EDSQVYV 755 (969)
Q Consensus 749 ~Dg~I~I 755 (969)
..|.|.|
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 7776654
No 60
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8e-24 Score=220.29 Aligned_cols=244 Identities=21% Similarity=0.354 Sum_probs=205.8
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
..+..+++|.++|++++.+ +.|+|+||.|-+|+|||+.....+.
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---------------------------------- 77 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---------------------------------- 77 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc----------------------------------
Confidence 3455688999999999996 8999999999999999998644332
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS---HLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~---~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
.+..|.+.|+++.|.+. ..|++|+.||.|.+|++..-.++..+ +|.+.|
T Consensus 78 ---------------------------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V 130 (362)
T KOG0294|consen 78 ---------------------------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV 130 (362)
T ss_pred ---------------------------ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence 45679999999999873 49999999999999999999999988 899999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
+.++++| .+.+.++.+.|+.+++||+-.|+...........+.+.|+|.|.+++++..+ .|-||.+.+..+....
T Consensus 131 t~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i--- 205 (362)
T KOG0294|consen 131 TDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI--- 205 (362)
T ss_pred ceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh---
Confidence 9999999 9999999999999999999998877777777777779999999999988755 6889998876653321
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEE--eCCCCEEEEEeCCCcEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAF--NADGKYIISASEDSQVYV 755 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~f--spdg~~LaSgs~Dg~I~I 755 (969)
.....+.++.|... ..+++|..|+.|.+||............|...|-.+.+ .|++.||+|++.||.|+|
T Consensus 206 ------~~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 206 ------ENPKRILCATFLDG--SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred ------hccccceeeeecCC--ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 12356777777654 59999999999999998766666666677778888774 567899999999999999
Q ss_pred EEcCCC
Q 002086 756 WKREEH 761 (969)
Q Consensus 756 Wdl~t~ 761 (969)
||++..
T Consensus 278 Wd~~~~ 283 (362)
T KOG0294|consen 278 WDIDME 283 (362)
T ss_pred EEcccc
Confidence 999874
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.8e-24 Score=233.28 Aligned_cols=248 Identities=20% Similarity=0.359 Sum_probs=210.0
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
...+++.-....|++++|-.||++||.|...|.|+|+|..+...
T Consensus 59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i------------------------------------ 102 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI------------------------------------ 102 (487)
T ss_pred hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH------------------------------------
Confidence 33444556788999999999999999999999999999654222
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVT 598 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~ 598 (969)
+..+.+|+.+|..+.|+| +..|++|+.|+.+++||+.+......+ +|++.|.
T Consensus 103 -------------------------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 103 -------------------------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred -------------------------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 225778999999999998 688999999999999999998864333 8999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
|.+|+|.++..+++|+.||+|++||++.. ..+..+.|..+|..+.+-|.|..|++++ ...|+|||+.++.....
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~---- 232 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLT---- 232 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehh----
Confidence 99999988889999999999999999987 7778889999999999999999999876 45899999996654322
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
....|.+.|+|+.+..++ ..|++++-|+.+++||+.+... .......++|.+++.+||++.++.|-.||.+.+=+
T Consensus 233 ---~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv-v~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 233 ---SMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV-VHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred ---hhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEE-EEeeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 224589999999999987 8999999999999999655444 34456788999999999999999999999988875
Q ss_pred cCC
Q 002086 758 REE 760 (969)
Q Consensus 758 l~t 760 (969)
...
T Consensus 308 ~~~ 310 (487)
T KOG0310|consen 308 REV 310 (487)
T ss_pred hhc
Confidence 544
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=218.82 Aligned_cols=249 Identities=18% Similarity=0.282 Sum_probs=213.4
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.++.-+.+|.||.++|+...+..+...-|+++.|-+.+|||..+|..+..+
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf----------------------------- 97 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF----------------------------- 97 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-----------------------------
Confidence 344457789999999999999999999999999999999999887665432
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE-EE-EeecCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC-LK-LFAHND 595 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~-i~-~~~h~~ 595 (969)
.|..-|.+++|+. .++|++|+.++.++|||++..+. .. .-+|.+
T Consensus 98 ---------------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 98 ---------------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred ---------------------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 3777899999998 78999999999999999987653 23 338999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
.|..+.|.. .++.|++...|++||+||.+++..++.+.....|+++.++++|++|.++ ..+.|.+||..+..++...
T Consensus 145 ~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~- 221 (334)
T KOG0278|consen 145 GIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY- 221 (334)
T ss_pred cceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeec-
Confidence 999999998 7888999999999999999999999999999999999999999877665 4678999999988766543
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
.....|.+...+|.. ..+++|+.|..++.||..+....-. ...|.++|.|+.|+|||...++|++||+|+
T Consensus 222 --------k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 222 --------KMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred --------cCccccccccccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEE
Confidence 335568889999987 8999999999999999665444333 356889999999999999999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
||....+
T Consensus 293 lWQt~~~ 299 (334)
T KOG0278|consen 293 LWQTTPG 299 (334)
T ss_pred EEEecCC
Confidence 9998764
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=9e-23 Score=219.20 Aligned_cols=284 Identities=24% Similarity=0.400 Sum_probs=216.0
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
..+.+|...|.++.+..+...+++++.+..+..|...... ....+.........+.+.++...+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~--------- 68 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLAS--------- 68 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEE---------
Confidence 5567999999999987777777777777777766533211 11111111122223333333322111
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecC
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEG 491 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~ 491 (969)
...++... ++++...+....+.+|...|.+++|++++++|++++.|+.|++||+.+++...
T Consensus 69 ------~~~~~~i~---------i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---- 129 (289)
T cd00200 69 ------GSSDKTIR---------LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---- 129 (289)
T ss_pred ------EcCCCeEE---------EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE----
Confidence 11122222 33455556677788999999999999999999999999999999998655433
Q ss_pred CccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEE
Q 002086 492 NLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLS 570 (969)
Q Consensus 492 ~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~S 570 (969)
.+..|...|.++.|++ +.++++
T Consensus 130 ---------------------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 130 ---------------------------------------------------------TLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred ---------------------------------------------------------EeccCCCcEEEEEEcCcCCEEEE
Confidence 3446888999999999 778888
Q ss_pred EeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCC
Q 002086 571 SSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDG 648 (969)
Q Consensus 571 gs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg 648 (969)
++.|+.|++||+.+++.+..+ .|...|.++.|+| ++..|++++.|+.|++||+..++.+... .+...+.+++|+|++
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred EcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 888999999999988887776 6778999999999 8889999999999999999988777666 677899999999998
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 649 ~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.++++++.+|.|++|++..++..... ..|...|.+++|+|++ ..+++++.|+.|++|+
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQTL--------SGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEEEc--------cccCCcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence 88888888999999999876654332 3567789999999987 7999999999999996
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=3.8e-24 Score=234.04 Aligned_cols=288 Identities=16% Similarity=0.221 Sum_probs=219.8
Q ss_pred CCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE----EEEe--ecCCCeEEEEEecCCCCEEEEEECC
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC----LKLF--AHNDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~----i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
...-..+.+|+..|.++++.| |..|++|+.|.+|++||+..... .+.+ .....|.+++|++ .++.|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecC
Confidence 334457889999999999998 99999999999999999986432 1222 3567899999999 89999999888
Q ss_pred CeEEEEeCCCceEEE-------------EecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 617 AKVRIWSISDRLVVD-------------WTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 617 g~I~IWDl~~~~~~~-------------~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
...+|+|-...+++. ..+|...++|.+|+|.. +.|++++.||+++|||+...+..... + .....
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV-i-k~k~~ 313 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV-I-KTKPA 313 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE-E-eeccC
Confidence 999999987655443 45667789999999975 47889999999999999887643221 1 11122
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-----ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-----IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-----~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
.+..-+++.++|++++ .+|++|+.||.|.+|+... ....-..|.....|+++.||+||++|++-+.|+++++||
T Consensus 314 ~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 3556688999999999 6799999999999999543 233334555566899999999999999999999999999
Q ss_pred cCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc-----
Q 002086 758 REEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG----- 832 (969)
Q Consensus 758 l~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~----- 832 (969)
++..+. ++.........| ...-++|||+...|+++
T Consensus 393 Lrq~kk-----pL~~~tgL~t~~-----------------------------------~~tdc~FSPd~kli~TGtS~~~ 432 (641)
T KOG0772|consen 393 LRQFKK-----PLNVRTGLPTPF-----------------------------------PGTDCCFSPDDKLILTGTSAPN 432 (641)
T ss_pred cccccc-----chhhhcCCCccC-----------------------------------CCCccccCCCceEEEecccccC
Confidence 997321 111111111111 12356788888887765
Q ss_pred -CCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccC
Q 002086 833 -HSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSN 875 (969)
Q Consensus 833 -~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s 875 (969)
...+.|+.|...+......+..+...+..+.|||.++++|+.+
T Consensus 433 ~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 433 GMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred CCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 2334688888887777777778888999999999999999987
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=3.2e-23 Score=243.55 Aligned_cols=251 Identities=23% Similarity=0.377 Sum_probs=212.2
Q ss_pred ccccccceeeeE-ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 435 YKDLSALHLCQE-IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 435 l~dl~~~~l~~~-L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
+|+....+.+.. |.||.+.|++++|..-+.+|++|+.|.+++|||+.+|+++.
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-------------------------- 285 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-------------------------- 285 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE--------------------------
Confidence 446666666666 99999999999999878899999999999999999888766
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA- 592 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~- 592 (969)
.+.||.+.|.++...+ ..+++|+.|.+|++|++.++.++.++.
T Consensus 286 -----------------------------------~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 286 -----------------------------------SLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred -----------------------------------EecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEecc
Confidence 6778999999998875 778889999999999999999999996
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ce
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS-KL 670 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~-~~ 670 (969)
|.++|.++..+ +.++++|+.|++|++||+.+++++. +.+|...|.++.+... ..+++|+.|++|++||+++. ++
T Consensus 330 h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c 405 (537)
T KOG0274|consen 330 HTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC 405 (537)
T ss_pred ccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh
Confidence 99999999995 7999999999999999999988775 5668899999988766 89999999999999999998 54
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec-CCCCeEEEEEeCCCCEEEEEeC
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR-NTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~-~~~~V~sl~fspdg~~LaSgs~ 749 (969)
... ...|..-+..+.+.. .+|++++.|++|++||..+......... +...|..+++. ...+++++.
T Consensus 406 ~~t--------l~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~ 472 (537)
T KOG0274|consen 406 IHT--------LQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD 472 (537)
T ss_pred hhh--------hcCCccccccccccc---ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec
Confidence 333 267777777777654 6899999999999999766544444333 55677777765 467999999
Q ss_pred CCcEEEEEcCCCCcc
Q 002086 750 DSQVYVWKREEHRNA 764 (969)
Q Consensus 750 Dg~I~IWdl~t~~~~ 764 (969)
||.+++||+.+++..
T Consensus 473 ~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLI 487 (537)
T ss_pred CCeeEEEecccCchh
Confidence 999999999986543
No 66
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=7e-23 Score=235.35 Aligned_cols=422 Identities=18% Similarity=0.203 Sum_probs=290.8
Q ss_pred CCcEEEEeeCCCCcEEEEe--------------------eccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecc
Q 002086 288 LGAFFLIKNLDTGKEFIVN--------------------EYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRR 347 (969)
Q Consensus 288 ~~~~~~i~~ld~g~~~vv~--------------------~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~ 347 (969)
.++.+.|||+.+|+++... -+-.+|. +.+.++..++.|. +| ..--+.|.+|.|+
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~-ViifNlK~dkil~--sF---k~d~g~VtslSFr 253 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGT-VIIFNLKFDKILM--SF---KQDWGRVTSLSFR 253 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCce-EEEEEcccCcEEE--EE---EccccceeEEEec
Confidence 5788999999999887432 2455555 4689999998854 23 3225899999998
Q ss_pred ccccc-ccCCCCcccccccccccccccccccccccceee--eeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcc
Q 002086 348 ENVNR-INDSAGKFSANSYLSKSLRMSKRRGAALLKNIK--GVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNH 424 (969)
Q Consensus 348 ~~~~~-~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~--gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (969)
+++.. ++++..-+...+| ++.+++...-++... ++...-.+.|.+..+... .++.-..
T Consensus 254 tDG~p~las~~~~G~m~~w-----DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~--------------~DnSlk~ 314 (910)
T KOG1539|consen 254 TDGNPLLASGRSNGDMAFW-----DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG--------------ADNSLKV 314 (910)
T ss_pred cCCCeeEEeccCCceEEEE-----EcCCCeeeeeeeccccCCcccceecCCCceEeecc--------------CCCceeE
Confidence 77654 4444333445555 455555444444322 233333223333332222 4567777
Q ss_pred eEEEccCCCcccccccceeeeEecccccCEEEEEEe-CCCCEEEEEeCCCcEEEEecccceEEEeecC-------CccCc
Q 002086 425 WVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFS-LDARFLASAGEDRVIHVWEVQECEVMSMSEG-------NLTPI 496 (969)
Q Consensus 425 ~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fS-pDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~-------~~~~v 496 (969)
|+.+...+. .++++.-.||..+-.||.|. .+|.++.+++.|++.+.+++.....-+.+.. .....
T Consensus 315 ~vfD~~dg~-------pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 315 WVFDSGDGV-------PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred EEeeCCCCc-------chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 877643332 34566678999999999998 6889999999999999998753221111000 00000
Q ss_pred c-cccccCCCCCccCCCCCCCCCcccccCCCCCCCCc---ccccceeeecCCCcee-------EeccCCCCEEEEEecC-
Q 002086 497 H-PSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY---VHVPETVFSLSEKPFC-------SFIGHLDDVLDLSWSR- 564 (969)
Q Consensus 497 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~k~~~-------~l~gH~~~I~~l~fs~- 564 (969)
. .............. .......+.+... -......|....+... .++.-...+++++.++
T Consensus 388 ~~~~~~k~p~i~~fa~--------~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C 459 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAF--------ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC 459 (910)
T ss_pred cchhhhcCCcceeeec--------ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc
Confidence 0 00000000000000 0000000111000 1111233443333321 1122346788999998
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~ 640 (969)
|++.+.|...|+|-+|++++|-....| .|..+|++++... .+..+++++.+|.+++||..+..++........+.
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~ 538 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT 538 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcc
Confidence 999999999999999999999999888 7999999999987 77899999999999999999999888888899999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
++.++.....++++..|-.|+++|+.+.+... ...+|...|+.++|+|+| .+|++++.|++|++||+....
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR--------~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR--------EFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhH--------HhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcc
Confidence 99999999999999999999999998877543 337899999999999999 899999999999999976644
Q ss_pred EEEEeecCCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEcCC
Q 002086 721 HKFRGFRNTSSQISAAFNADGKYIISASED-SQVYVWKREE 760 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~~LaSgs~D-g~I~IWdl~t 760 (969)
. +....-..+++++.|+|+|.+|||...| .-|++|--.+
T Consensus 610 l-ID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 610 L-IDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred e-eeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 3 3444456778999999999999999999 5699998654
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=210.87 Aligned_cols=280 Identities=16% Similarity=0.203 Sum_probs=230.3
Q ss_pred CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEE
Q 002086 543 SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVR 620 (969)
Q Consensus 543 ~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~ 620 (969)
..+....+..|+++|.++.|+- +++.++++.|++|++|+...+.+++++ +|...|..++.+. ++..|++|+.|..|.
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQ 84 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEE
Confidence 3445667889999999999997 999999999999999999999999999 8999999999998 899999999999999
Q ss_pred EEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 621 IWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 621 IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+||+.+|++.. +.+|...|+.+.|+.+...+++|+.|..+++||.+.....+...+ ......|.++....
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil------dea~D~V~Si~v~~--- 155 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL------DEAKDGVSSIDVAE--- 155 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh------hhhcCceeEEEecc---
Confidence 99999998765 566779999999999999999999999999999998765443322 44567788988875
Q ss_pred ceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCc
Q 002086 700 SEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEH 779 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~ 779 (969)
..+++|+.||+++.||++........+ ..+|++++|++|++.++.++.|++|++.|-.+++.+..-+ .+...
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk------Ghkn~ 227 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK------GHKNM 227 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc------ccccc
Confidence 689999999999999988765544433 3469999999999999999999999999999966554322 11111
Q ss_pred eeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCC-
Q 002086 780 FQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEE- 858 (969)
Q Consensus 780 ~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~- 858 (969)
.. -.-+++.....+++++++++.+|.|..........+..|...
T Consensus 228 ey-----------------------------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~ 272 (307)
T KOG0316|consen 228 EY-----------------------------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVI 272 (307)
T ss_pred ee-----------------------------------eeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCcee
Confidence 00 012334444557889999999999998888777777777776
Q ss_pred ccccccCCCCCCccccC
Q 002086 859 LSLISHDPGISESFTSN 875 (969)
Q Consensus 859 l~~is~hP~~~~~~~~s 875 (969)
+.+++.||.....|+..
T Consensus 273 v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 273 VTDLSCHPTMDDFITAT 289 (307)
T ss_pred EEeeecccCccceeEec
Confidence 77889999998888773
No 68
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=2.1e-22 Score=236.26 Aligned_cols=256 Identities=14% Similarity=0.223 Sum_probs=192.4
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
|-..|.....++|+..+++++.+..+..|+...+..+..... .++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~--------------------------------~G~--- 63 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTD--------------------------------YGK--- 63 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccc--------------------------------ccc---
Confidence 455667777888988899999999999998765533221100 000
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc-------EEEEe-ecCCCeEE
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS-------CLKLF-AHNDYVTC 599 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~-------~i~~~-~h~~~V~s 599 (969)
.. .....+.+|.+.|++++|+| +++|++|+.|++|+|||+.++. ++..+ +|...|.+
T Consensus 64 ------------~~-~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~ 130 (493)
T PTZ00421 64 ------------LA-SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130 (493)
T ss_pred ------------CC-CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEE
Confidence 00 00124779999999999998 5799999999999999997653 33334 89999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++|+|..+++|++++.|++|+|||+.+++.+.. ..|...|.+++|+|+|.+|++++.|+.|+|||+++++.....
T Consensus 131 l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl---- 206 (493)
T PTZ00421 131 VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV---- 206 (493)
T ss_pred EEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE----
Confidence 999994457999999999999999998876654 457788999999999999999999999999999988754332
Q ss_pred cccccCCCC-CeEEEEEcCCCCceEEEEe----CCCcEEEEeCCcceEEEEe--ecCCCCeEEEEEeCCCCEEEEEe-CC
Q 002086 679 QTKKKSSTR-KITGFQFSPSNPSEVLVTS----ADSRIRILDGLDIVHKFRG--FRNTSSQISAAFNADGKYIISAS-ED 750 (969)
Q Consensus 679 ~~~~~~h~~-~It~l~fspd~~~~l~sgs----~Dg~I~IwD~~~~~~~~~~--~~~~~~V~sl~fspdg~~LaSgs-~D 750 (969)
..|.. .+..+.|.+++. .+++++ .|+.|++||.++....+.. ......+....|++++.+|++++ .|
T Consensus 207 ----~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 207 ----EAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred ----ecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence 34443 345678888774 555443 4799999998764433322 22334455678999999999888 49
Q ss_pred CcEEEEEcCCCC
Q 002086 751 SQVYVWKREEHR 762 (969)
Q Consensus 751 g~I~IWdl~t~~ 762 (969)
+.|++||+.+++
T Consensus 282 g~Iriwdl~~~~ 293 (493)
T PTZ00421 282 GNIRCFELMNER 293 (493)
T ss_pred CeEEEEEeeCCc
Confidence 999999998743
No 69
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=7.6e-24 Score=231.72 Aligned_cols=302 Identities=16% Similarity=0.236 Sum_probs=210.4
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe----e-cCCccCcccccccCC-CCCccCCCCCCC
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM----S-EGNLTPIHPSLCNSS-DKASSLDGSSPN 516 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~----~-~~~~~~v~~~~~~~~-~~~~~~~g~~~~ 516 (969)
.-..|++|+..|.++++.|.|-.|+|||.|.+|++||+........ + ......+..+.+... +..+.+.|....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 3455899999999999999999999999999999999875332111 0 111112222222222 112222222222
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc-EEEEe--
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS-CLKLF-- 591 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~-~i~~~-- 591 (969)
...+.... ....+......+ .-+...+||...++|.+|+| .+.|+|++.||+++|||+...+ .+.++
T Consensus 239 kl~DRdG~---~~~e~~KGDQYI-----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 239 KLLDRDGF---EIVEFSKGDQYI-----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred eEEccCCc---eeeeeeccchhh-----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 11110000 000011110011 11224579999999999999 6899999999999999998644 34444
Q ss_pred ----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE----EEEecCCC--CEEEEEEccCCCEEEEEeCCCcEE
Q 002086 592 ----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV----VDWTDLHE--MVTAACYTPDGQNALIGSHKGSCR 661 (969)
Q Consensus 592 ----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~----~~~~~~~~--~V~sv~fspdg~~Lasgs~dg~I~ 661 (969)
+..-+++.++|++ ++..|++|+.||.|.+|+.....+ .....|.. .|+||.|+++|++|++-+.|++++
T Consensus 311 k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 2345789999999 999999999999999999865422 22334444 799999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe------CCCcEEEEeCCcceEEEEeecCCCCeEEE
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS------ADSRIRILDGLDIVHKFRGFRNTSSQISA 735 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs------~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl 735 (969)
+||++..+....... ......+-+.++|+|+. .+|++|. ..+.+++||..+...+++.......|..+
T Consensus 390 vWDLrq~kkpL~~~t-----gL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRT-----GLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC 463 (641)
T ss_pred eeeccccccchhhhc-----CCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEE
Confidence 999998764321111 12334566789999998 7888874 35679999988887777777778889999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 736 AFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.|+|.-+.|+.|+.||+++||==.
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eecchhhheeeecCCCceEEEECc
Confidence 999998889999999999987433
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=5.7e-24 Score=227.99 Aligned_cols=248 Identities=24% Similarity=0.342 Sum_probs=213.7
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
..+..+|.|-.+.|+.++|.+++++++.++.|+.+++|++...+...
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~--------------------------------- 255 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH--------------------------------- 255 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh---------------------------------
Confidence 34677889999999999999999999999999999999998755433
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC 599 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~-~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~s 599 (969)
+|.||++.|+++.|..+ ..+++|+.|.+|++||+....|.+++-....+..
T Consensus 256 ----------------------------TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnD 307 (459)
T KOG0288|consen 256 ----------------------------TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCND 307 (459)
T ss_pred ----------------------------hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccc
Confidence 67889999999999884 4499999999999999999999999877788888
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
|... ...+++|-.|++|++||+++..+.......+.|+++..+++|..|++++.|.++.+.|+++..........
T Consensus 308 I~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-- 382 (459)
T KOG0288|consen 308 IVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-- 382 (459)
T ss_pred eEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc--
Confidence 8875 57799999999999999999999888888889999999999999999999999999999998876554322
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR--NTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~--~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
........+.+.|+|++ .++++|+.||.|+||++.+......... ....|++++|+|.|.+|++++.++.+.+|.
T Consensus 383 --g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 383 --GFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred --ccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 12223448999999998 8999999999999999776555544433 333699999999999999999999999993
No 71
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1e-21 Score=221.09 Aligned_cols=506 Identities=17% Similarity=0.181 Sum_probs=309.7
Q ss_pred CCcEEEEeeCCCC----------cEEEEeeccCCCcee-----------EEEecCCCceeeeeehhhccCCCcceeeeec
Q 002086 288 LGAFFLIKNLDTG----------KEFIVNEYSENGMWN-----------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMR 346 (969)
Q Consensus 288 ~~~~~~i~~ld~g----------~~~vv~~~~~dg~~~-----------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~ 346 (969)
.+=++.++|.+.. +.+.+..|+++|+++ +||++++--++ ..+.-|.=.|.+++|
T Consensus 56 AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vV-----AEfvdHKY~vtcvaF 130 (1080)
T KOG1408|consen 56 AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVV-----AEFVDHKYNVTCVAF 130 (1080)
T ss_pred cCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccch-----hhhhhccccceeeee
Confidence 3445666666633 445566788888887 99999998873 445889999999998
Q ss_pred ccccccccCCC--CcccccccccccccccccccccccceeeeeEEEeeecCCccc--------------------cCCCC
Q 002086 347 RENVNRINDSA--GKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKEC--------------------INPNP 404 (969)
Q Consensus 347 ~~~~~~~~t~s--~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~--------------------~~~~~ 404 (969)
......+++.+ -|+.++.|. |+..... .-..+..++..++|+.|... -++-|
T Consensus 131 sp~~kyvvSVGsQHDMIVnv~d---Wr~N~~~---asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 131 SPGNKYVVSVGSQHDMIVNVND---WRVNSSG---ASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred cCCCcEEEeeccccceEEEhhh---hhhcccc---cccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCcc
Confidence 66555555433 344566664 3333221 23445566666666666532 11222
Q ss_pred cccchHHHHHHhhccccCcceEEEc-------------cCCCcccccccceeeeEe-cccccCEEEEEEeCCCCEEEEEe
Q 002086 405 LLGDQREQKEQKQNKNVSNHWVKVR-------------QSGKSYKDLSALHLCQEI-QAHEGSIWTIKFSLDARFLASAG 470 (969)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~v~v~-------------~~~~~l~dl~~~~l~~~L-~gH~~~I~~l~fSpDg~~LaTgs 470 (969)
+++-..... .---+.|.-+. .....+.++...+++-.+ +--+..-.||+.+ .++++.|+
T Consensus 205 l~gRs~~lg-----~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgC 277 (1080)
T KOG1408|consen 205 LPGRSYFLG-----NLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGC 277 (1080)
T ss_pred ccchhhhcc-----ccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEee
Confidence 221100000 00000010000 000001111111111100 0113334566665 67999999
Q ss_pred CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEe
Q 002086 471 EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSF 550 (969)
Q Consensus 471 ~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l 550 (969)
.+|+|+||+-.+.+.+.++...... ......+.. ++..+.. .-
T Consensus 278 a~g~vrlFnp~tL~y~~Tlpr~hal----------g~d~a~~~q---------------------~~~~~s~------~~ 320 (1080)
T KOG1408|consen 278 AKGMVRLFNPETLDYAGTLPRSHAL----------GSDTANLSQ---------------------PEPKNSE------SS 320 (1080)
T ss_pred ccceeeecCcchhhhcccccccccc----------ccchhhccc---------------------ccccccc------cC
Confidence 9999999998876665543321000 000000000 0000000 00
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC----CcEEEEeecCCCeEEEEEecC----------CCCEEEEEEC
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET----KSCLKLFAHNDYVTCIQFNPM----------DDDYFISGSL 615 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t----~~~i~~~~h~~~V~sv~fsp~----------~~~~L~sgs~ 615 (969)
.+---...++.|.+ .+.|...-.|..++|||++. +++...+-|...|+.|...|- -...|++++.
T Consensus 321 ~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 321 PAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred cccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecC
Confidence 01112345778887 78888889999999999976 455566689999998877661 1346999999
Q ss_pred CCeEEEEeCCCc---eEE-----------------------------------EEecCCCCEEEEEEccCCCEEEEEeCC
Q 002086 616 DAKVRIWSISDR---LVV-----------------------------------DWTDLHEMVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 616 Dg~I~IWDl~~~---~~~-----------------------------------~~~~~~~~V~sv~fspdg~~Lasgs~d 657 (969)
|++|++||+..+ .+. ...+....+.+++.+|+|++|++|..-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 999999999652 110 112223459999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC--CCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEE
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS--NPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQIS 734 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd--~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~s 734 (969)
|+++||++....... ....|...|.|+.|+.- +..+|++++.|.-|.|||.... ...-..-.|...|++
T Consensus 481 GnlrVy~Lq~l~~~~--------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTC--------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred CceEEEEehhhhhhh--------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 999999998766432 23789999999999852 2368999999999999996543 222334456888999
Q ss_pred EEEeCCC--CEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCC---ceeeeeeEEeecCCCcc-cCCCCCccEEEcc
Q 002086 735 AAFNADG--KYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHE---HFQCKDVSVAIPWPGMV-KGEPPPTPVQTKK 808 (969)
Q Consensus 735 l~fspdg--~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~---~~~~~~~s~~~~w~~~i-~G~~~~~~v~~~~ 808 (969)
+.|--.| ..+++++.|..|.+=-... ...+ .++.+++. +-+--+..+...|..++ .+++..+.++...
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk---~~~g---~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQK---ASSG---RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhcc---ccCc---eeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 9998877 7899999998876432221 1112 22222222 11222444455554444 3466666666555
Q ss_pred cccc---------cCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCcccc
Q 002086 809 HAKR---------ISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLI 862 (969)
Q Consensus 809 ~~~~---------~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~i 862 (969)
.+|+ ..+...-...-|.|.++++-..+..|-.+..-++....++++|.|-+.++
T Consensus 627 sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 627 SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence 5543 34566667778999999999999999999999998888888888876544
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=6.9e-24 Score=213.98 Aligned_cols=288 Identities=17% Similarity=0.279 Sum_probs=238.7
Q ss_pred eeEecccccCEEEEEEeC---CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 444 CQEIQAHEGSIWTIKFSL---DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSp---Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
-.+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi---------------------------------- 52 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI---------------------------------- 52 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE----------------------------------
Confidence 345789999999999996 8999999999997766655554333
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC 599 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~s 599 (969)
.+|.||.+.|+...... ...-++++.|-+.+|||.-+|..+..|.|..-|.+
T Consensus 53 ---------------------------gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~ 105 (334)
T KOG0278|consen 53 ---------------------------GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKA 105 (334)
T ss_pred ---------------------------EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeee
Confidence 37889999999999987 46778899999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
++|+. +.++|++|+.+..++|||++.. .+..+.+|...|..+.|....+.|++...|++||+||.+++...+...+
T Consensus 106 ~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF- 183 (334)
T ss_pred EEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-
Confidence 99999 9999999999999999999865 4667888999999999999999999999999999999999988766433
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
..+|+++.++++| .+++....+.|.+||..... .++...-+..|.+.+++|+..++++|++|+.++.||
T Consensus 184 --------~s~VtSlEvs~dG--~ilTia~gssV~Fwdaksf~-~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 184 --------NSPVTSLEVSQDG--RILTIAYGSSVKFWDAKSFG-LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred --------CCCCcceeeccCC--CEEEEecCceeEEecccccc-ceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence 5679999999997 67888888999999965432 344455567789999999999999999999999999
Q ss_pred cCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCc
Q 002086 758 REEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRL 837 (969)
Q Consensus 758 l~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~ 837 (969)
+.+++.+.. ....++..+. +..|||+|+..+++++|+.
T Consensus 253 y~TgeEi~~-----~nkgh~gpVh-------------------------------------cVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 253 YNTGEEIGS-----YNKGHFGPVH-------------------------------------CVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ccCCceeee-----cccCCCCceE-------------------------------------EEEECCCCceeeccCCCce
Confidence 999543221 0122222222 3457999999999999999
Q ss_pred cccCCCCCCc
Q 002086 838 LPPLPKKTNK 847 (969)
Q Consensus 838 L~~~~~~s~~ 847 (969)
+..|....++
T Consensus 291 irlWQt~~~~ 300 (334)
T KOG0278|consen 291 IRLWQTTPGK 300 (334)
T ss_pred EEEEEecCCC
Confidence 9999876554
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=7.8e-23 Score=217.38 Aligned_cols=253 Identities=19% Similarity=0.332 Sum_probs=205.0
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
|.+.|.++... +++++||+.||+++|||.. |
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-G---------------------------------------------- 134 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-G---------------------------------------------- 134 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-C----------------------------------------------
Confidence 99999999988 7899999999999999975 2
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-C---cEEEEEeCCCcEEEEECCCCcEEE-----EeecCCCeEEE
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-S---HLLLSSSMDKTVRLWDMETKSCLK-----LFAHNDYVTCI 600 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~---~~L~Sgs~DgtV~IWDl~t~~~i~-----~~~h~~~V~sv 600 (969)
+....+.||.++|.+++|.. + ..|++++.|.++++|.++.++... ..+|...|.+|
T Consensus 135 ---------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 135 ---------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred ---------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 22346789999999998864 3 469999999999999998776432 12899999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCc--------------------------eEEEEecCCCCEEEEEEccCCCEEEEE
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDR--------------------------LVVDWTDLHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~--------------------------~~~~~~~~~~~V~sv~fspdg~~Lasg 654 (969)
...+ ++..|++|+.|.+|+||+..+. .++.+.+|..+|.++.|++ ...++++
T Consensus 200 sv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~ 277 (423)
T KOG0313|consen 200 SVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSV 277 (423)
T ss_pred EecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEee
Confidence 9999 9999999999999999993210 2346778889999999998 6789999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCC
Q 002086 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSS 731 (969)
Q Consensus 655 s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~ 731 (969)
+.|.+|+.||+.++..... ......++++.++|.. .+|++|+.|..|++||.+.. ........|...
T Consensus 278 SwDHTIk~WDletg~~~~~---------~~~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw 347 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKST---------LTTNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW 347 (423)
T ss_pred cccceEEEEEeecccceee---------eecCcceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence 9999999999999886544 2345779999999977 89999999999999997642 333444556778
Q ss_pred eEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeee
Q 002086 732 QISAAFNADG-KYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCK 783 (969)
Q Consensus 732 V~sl~fspdg-~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~ 783 (969)
|.++.|+|.. ..|++|+.|+++++||+++.+ .+++...++.+.+.|.
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k-----~plydI~~h~DKvl~v 395 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK-----APLYDIAGHNDKVLSV 395 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCC-----CcceeeccCCceEEEE
Confidence 9999999955 568899999999999999832 2556666665544433
No 74
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=4.1e-22 Score=233.83 Aligned_cols=251 Identities=17% Similarity=0.228 Sum_probs=185.5
Q ss_pred EecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 446 EIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
.|.||.+.|++++|+| ++++||||+.|++|+|||+.++....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~------------------------------------- 112 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ------------------------------------- 112 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-------------------------------------
Confidence 4789999999999999 88999999999999999987532210
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
....++..+.+|...|.+++|+| +++|++|+.|++|+|||+.+++.+..+ .|...|.+++
T Consensus 113 -----------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 113 -----------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred -----------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 01124457889999999999998 369999999999999999999988777 6999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCC-EEEEEEccCCCEEEEEe----CCCcEEEEEcCCCceeeeee
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEM-VTAACYTPDGQNALIGS----HKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~-V~sv~fspdg~~Lasgs----~dg~I~IwDl~~~~~~~~~~ 675 (969)
|+| ++.+|++++.|++|+|||+++++.+.. ..|... +..+.|.+++..+++++ .|+.|++||++........
T Consensus 176 ~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~- 253 (493)
T PTZ00421 176 WNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST- 253 (493)
T ss_pred EEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE-
Confidence 999 999999999999999999998876544 445443 45778899888877654 4789999999875422110
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
. .......+....|++++ .+|++++ .|+.|++||+.+....+. .+.....+..++|.|.-..=+..+ -..
T Consensus 254 ~-----~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~--Ei~ 325 (493)
T PTZ00421 254 V-----DLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKC--EIA 325 (493)
T ss_pred e-----ccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccccccce--eee
Confidence 0 01233456667788887 5666665 699999999775443332 223444567788887532222222 234
Q ss_pred EEEEcCC
Q 002086 754 YVWKREE 760 (969)
Q Consensus 754 ~IWdl~t 760 (969)
++|.+..
T Consensus 326 r~~~l~~ 332 (493)
T PTZ00421 326 RFYALTY 332 (493)
T ss_pred EEEEecC
Confidence 6666643
No 75
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=7.3e-22 Score=232.84 Aligned_cols=256 Identities=16% Similarity=0.245 Sum_probs=186.8
Q ss_pred ceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
...+..|.+|.+.|++++|+|+ +.+||||+.|++|+|||+.++.....
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~------------------------------- 112 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK------------------------------- 112 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------------------
Confidence 3457789999999999999996 78999999999999999875321000
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCCCe
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V 597 (969)
....++..+.+|...|.+++|+| +. +|++++.|++|+|||+.+++.+..+.|...|
T Consensus 113 ----------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V 170 (568)
T PTZ00420 113 ----------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKL 170 (568)
T ss_pred ----------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcE
Confidence 00123446788999999999999 54 5679999999999999999988777788899
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEE-----EEEEccCCCEEEEEeCCC----cEEEEEcCC
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVT-----AACYTPDGQNALIGSHKG----SCRLYSIED 667 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~-----sv~fspdg~~Lasgs~dg----~I~IwDl~~ 667 (969)
.+++|+| ++.+|++++.|+.|+|||+++++++. +..|.+.+. ...|++++.+|++++.++ .|+|||++.
T Consensus 171 ~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 171 SSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 9999999 99999999999999999999987665 445655433 234568889999887764 799999996
Q ss_pred C-ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 668 S-KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 668 ~-~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
. +......+ ..+...+... |.++.+.++++|+.|++|++|+.... ...+..+.+..++.+++|.|....=+
T Consensus 250 ~~~pl~~~~l------d~~~~~L~p~-~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~~dv 322 (568)
T PTZ00420 250 TTSALVTMSI------DNASAPLIPH-YDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQICDV 322 (568)
T ss_pred CCCceEEEEe------cCCccceEEe-eeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccccCc
Confidence 3 33222111 2223333333 33444488999999999999997543 34444555667788999999654322
Q ss_pred EEeCCCcEEEEEcC
Q 002086 746 SASEDSQVYVWKRE 759 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~ 759 (969)
..++ ..++|.+.
T Consensus 323 ~~cE--i~R~~kl~ 334 (568)
T PTZ00420 323 YKCE--IGRVYKNE 334 (568)
T ss_pred hhhh--HhHHhhhc
Confidence 2222 34555554
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2e-22 Score=239.02 Aligned_cols=270 Identities=25% Similarity=0.374 Sum_probs=209.3
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+++.++..|.+.|+|+.|++||++||+||.|+.|.||+.... .... ..|.....
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~---------------------~fgs~g~~--- 113 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGT---------------------VFGSTGGA--- 113 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCcc---------------------cccccccc---
Confidence 3566778899999999999999999999999999999997641 0000 00000000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVT 598 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~ 598 (969)
......+.+..+.+|...|.+++|+| +.+|++++.|++|.|||..+.++++++ +|...|.
T Consensus 114 ------------------~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK 175 (942)
T KOG0973|consen 114 ------------------KNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK 175 (942)
T ss_pred ------------------cccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc
Confidence 00012345678999999999999999 899999999999999999999988887 8999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec-------CCCCEEEEEEccCCCEEEEEeC----CCcEEEEEcCC
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD-------LHEMVTAACYTPDGQNALIGSH----KGSCRLYSIED 667 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-------~~~~V~sv~fspdg~~Lasgs~----dg~I~IwDl~~ 667 (969)
.+.|.| -+.||++-+.|++|+||.+.+-.+.+... .....+.+.|+|||++|++.-. ..++.|.+-.+
T Consensus 176 Gvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 176 GVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred ceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 999999 99999999999999999976644433322 2244789999999999998532 23677776655
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCC----CCc------------eEEEEeCCCcEEEEeCCcceEEEEeec-CCC
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPS----NPS------------EVLVTSADSRIRILDGLDIVHKFRGFR-NTS 730 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd----~~~------------~l~sgs~Dg~I~IwD~~~~~~~~~~~~-~~~ 730 (969)
.+.. ....+|..++.++.|+|. ... .+++|+.|++|-||........+..+. ...
T Consensus 255 Wk~~--------~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 255 WKVD--------KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred ceee--------eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 4422 223789999999999982 111 678899999999999765554444332 346
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 731 SQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 731 ~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.|..++|+|||-.|+.++.||+|.+..+++.+
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 79999999999999999999999999998753
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=236.03 Aligned_cols=236 Identities=21% Similarity=0.383 Sum_probs=204.8
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
|...|.+..|. ..++++++.|++|++||..++..+..
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~----------------------------------------- 243 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT----------------------------------------- 243 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe-----------------------------------------
Confidence 67778999998 56899999999999999988776541
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
.+.||.+.|++++|.. +.+|++|+.|.++++||+.+++|..++ +|...|.++... +
T Consensus 244 -------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~---~ 301 (537)
T KOG0274|consen 244 -------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID---P 301 (537)
T ss_pred -------------------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc---C
Confidence 4789999999999987 899999999999999999999999998 799999999984 5
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
.++++|+.|.+|++|++.++..+.+.. |..+|.++.++ +.++++|+.|++|++||+.+++++... .+|.
T Consensus 302 ~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl--------~gH~ 371 (537)
T KOG0274|consen 302 FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL--------SGHT 371 (537)
T ss_pred ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee--------cCCc
Confidence 889999999999999999999998888 99999999998 789999999999999999988765543 7799
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
..|+++.+.+. ..+++|+.|++|++||..+. .+......|...+..+ ...+++|++++.|+.|++||..+++++
T Consensus 372 ~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 372 GRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred ceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccccccEEEeecccCcee
Confidence 99999988874 58999999999999998876 5555555555555444 346789999999999999999985443
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.6e-22 Score=207.98 Aligned_cols=246 Identities=22% Similarity=0.329 Sum_probs=199.2
Q ss_pred ccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccc-eEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 449 AHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQEC-EVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 449 gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
.-++.|.+|+||| ...+|+.+|.|++||+|+++.. ....
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------------------------------- 65 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--------------------------------------- 65 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc---------------------------------------
Confidence 4578999999999 5567779999999999999752 2111
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM 605 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~ 605 (969)
+....|.++|.+++|+. +..+++|+.|+.+++||+.+++...+-.|.++|.++.|-+
T Consensus 66 ---------------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~- 123 (347)
T KOG0647|consen 66 ---------------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP- 123 (347)
T ss_pred ---------------------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-
Confidence 13456999999999998 8999999999999999999999999999999999999987
Q ss_pred CCC--EEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDD--YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~--~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
... .|++|+.|.+|+.||.+....+......+.++++..- ..+++++..+..|.+|++++..... .....
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~------k~~~S 195 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEF------KRIES 195 (347)
T ss_pred CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchh------hhhcC
Confidence 444 8999999999999999999999999999988888765 3588899999999999998764321 11112
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----ceEEEEeecC-------CCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD----IVHKFRGFRN-------TSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----~~~~~~~~~~-------~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
...-.+.|++..++. ...+.|+-+|.+.|..+.. ....|+.|.. -..|++++|+|.-..|+|++.||+
T Consensus 196 pLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred cccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence 344567888888877 5669999999998887543 2345555653 235778999999999999999999
Q ss_pred EEEEEcCCCCcc
Q 002086 753 VYVWKREEHRNA 764 (969)
Q Consensus 753 I~IWdl~t~~~~ 764 (969)
+.+||-+....+
T Consensus 275 f~FWDkdar~kL 286 (347)
T KOG0647|consen 275 FSFWDKDARTKL 286 (347)
T ss_pred EEEecchhhhhh
Confidence 999998864433
No 79
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=7.4e-24 Score=223.69 Aligned_cols=287 Identities=16% Similarity=0.289 Sum_probs=221.0
Q ss_pred eeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
-++..|.||.+.|.|++=+|.. ..+|||+.||.|+|||+...+++..++.+...+..+.+.........++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdD-------- 128 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDD-------- 128 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCC--------
Confidence 3456689999999999999976 6899999999999999999888888777766665555444111110000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVT 598 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~ 598 (969)
...+.|.+.+.+..++.+ ...+..|..+. ++.++|++.+ |-|||.....++..+. ..+.|.
T Consensus 129 --------------KtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 129 --------------KTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSIS 191 (433)
T ss_pred --------------cceeeeeccCCcceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCcee
Confidence 011233344445555544 34466677665 6788888764 8899998888888774 456799
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++.|+|.....|++|+.|+.|.+||++.+.++......-.-+.|+|+|.+-.|++|.+|..++.||++......
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~------ 265 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL------ 265 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccc------
Confidence 99999987888999999999999999999888777777777899999988889999999999999998765321
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
....+|...|..+.|+|.| +.+++|+.|.+|+||........-.- ...-..|.++.||-|.+|+++|+.|+.|++|.
T Consensus 266 -~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 266 -NVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred -hhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 1227899999999999999 89999999999999986543221111 12235689999999999999999999999999
Q ss_pred cCCC
Q 002086 758 REEH 761 (969)
Q Consensus 758 l~t~ 761 (969)
....
T Consensus 344 a~As 347 (433)
T KOG0268|consen 344 AKAS 347 (433)
T ss_pred cchh
Confidence 8753
No 80
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.3e-22 Score=228.35 Aligned_cols=252 Identities=20% Similarity=0.301 Sum_probs=209.7
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
+-..........-++..|+++.|+++|.+||.|..+|.|.|||..+.+.+.
T Consensus 203 ~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~----------------------------- 253 (484)
T KOG0305|consen 203 SASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR----------------------------- 253 (484)
T ss_pred ecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-----------------------------
Confidence 333333344444458999999999999999999999999999988654433
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEecc-CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEE-e-ec
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIG-HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKL-F-AH 593 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~g-H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~-~-~h 593 (969)
.+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... + +|
T Consensus 254 --------------------------------~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H 300 (484)
T KOG0305|consen 254 --------------------------------TLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGH 300 (484)
T ss_pred --------------------------------cccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence 3444 89999999999 68999999999999999998775544 3 79
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEEecCCCCEEEEEEccC-CCEEEEE--eCCCcEEEEEcCCCc
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPD-GQNALIG--SHKGSCRLYSIEDSK 669 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~~~V~sv~fspd-g~~Lasg--s~dg~I~IwDl~~~~ 669 (969)
...|..+.|++ ++.+|++|+.|+.+.|||... ..++.+..|...|.+++|+|- ...||+| +.|++|++||+.++.
T Consensus 301 ~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 301 RQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred cceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 99999999999 999999999999999999955 456678889999999999994 5577774 579999999999888
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE--eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT--SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg--s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
.... ......|..|.|++.. ..|+++ ..+..|.||+............|...|..++++|||.++++|
T Consensus 380 ~i~~---------vdtgsQVcsL~Wsk~~-kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 380 RIDS---------VDTGSQVCSLIWSKKY-KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred Eecc---------cccCCceeeEEEcCCC-CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 7544 3456789999999987 445544 456789999977766666667788889999999999999999
Q ss_pred eCCCcEEEEEcCCC
Q 002086 748 SEDSQVYVWKREEH 761 (969)
Q Consensus 748 s~Dg~I~IWdl~t~ 761 (969)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999999764
No 81
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=9.2e-23 Score=211.15 Aligned_cols=217 Identities=19% Similarity=0.363 Sum_probs=177.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceE----EEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV----MSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~----l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
..+..|.+++.+.+|++||.++|||+.|..|+|.|++..-. ..+..+..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~--------------------------- 158 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT--------------------------- 158 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc---------------------------
Confidence 44778999999999999999999999999999999873110 00000000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc---EEEEeecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS---CLKLFAHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~---~i~~~~h~~~ 596 (969)
......+.+|..|.++|.++.|+| ...|++|+.|++|++||+.... ..+.|....+
T Consensus 159 --------------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~ 218 (430)
T KOG0640|consen 159 --------------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP 218 (430)
T ss_pred --------------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccce
Confidence 001234568899999999999999 8999999999999999997643 3345678889
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE----ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW----TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~----~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
|.+|.|+| .|.+|++|..-.++++||+.+-++... ..|.+.|+++.+++.|++.++|+.||.|+|||--.++++.
T Consensus 219 vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 219 VRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred eeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 99999999 999999999999999999999877643 4566889999999999999999999999999988877654
Q ss_pred eeeeeecccccCC-CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 673 LNQVDFQTKKKSS-TRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 673 ~~~~~~~~~~~~h-~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
... ..| ...|.+..|..++ .++++.+.|..+++|.+.
T Consensus 298 t~~-------~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 298 TIG-------NAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEIS 335 (430)
T ss_pred HHH-------hhcCCceeeeEEEccCC-eEEeecCCcceeeeeeec
Confidence 321 334 4578889999987 899999999999999854
No 82
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=2e-21 Score=229.22 Aligned_cols=205 Identities=15% Similarity=0.200 Sum_probs=158.4
Q ss_pred eeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc--------EEEE-eecCCCeEEEEEecCCCC-EEEEEE
Q 002086 547 FCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS--------CLKL-FAHNDYVTCIQFNPMDDD-YFISGS 614 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~--------~i~~-~~h~~~V~sv~fsp~~~~-~L~sgs 614 (969)
+..+.+|.+.|.+++|+| +.+|++|+.|++|+|||+.++. ++.. .+|...|.+++|+| ++. +|++++
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSgS 145 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSSG 145 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEEe
Confidence 346789999999999998 5799999999999999998642 2223 37999999999999 565 567899
Q ss_pred CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEE---
Q 002086 615 LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG--- 691 (969)
Q Consensus 615 ~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~--- 691 (969)
.|++|+|||+++++......+...|.+++|+|+|.+|++++.|+.|+|||+++++..... .+|.+.+..
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl--------~gH~g~~~s~~v 217 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF--------HIHDGGKNTKNI 217 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE--------ecccCCceeEEE
Confidence 999999999999887665567788999999999999999999999999999998765332 445554432
Q ss_pred --EEEcCCCCceEEEEeCCC----cEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 692 --FQFSPSNPSEVLVTSADS----RIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 692 --l~fspd~~~~l~sgs~Dg----~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..|++++ .+|++++.|+ +|+|||.+.. ............+......++|.++++|+.|+.|++|++..+
T Consensus 218 ~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 218 WIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 3355776 6788777664 7999997742 333333333333333444556899999999999999999763
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=2.1e-23 Score=223.59 Aligned_cols=245 Identities=22% Similarity=0.454 Sum_probs=205.9
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
..+..|.+.|..+.|-++...|+|||.|..|++|++...+.
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~--------------------------------------- 209 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS--------------------------------------- 209 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------------------------
Confidence 44778999999999999988999999999999999874331
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
..+.+|.|..+.|+.+.|.+ +.++++++.|+.+++|++...+...++ +|++.|+++.|
T Consensus 210 --------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 210 --------------------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF 269 (459)
T ss_pred --------------------hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence 01225677889999999987 899999999999999999999998887 89999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
.. ....+++|+.|.+|++||+....+....-....+..|+.+ ...+++|-.|+.|++||++...+....
T Consensus 270 ~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv-------- 338 (459)
T KOG0288|consen 270 KL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV-------- 338 (459)
T ss_pred hc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe--------
Confidence 87 5556999999999999999998877766666667777776 567888999999999999998875542
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEE--eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFR--GFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
...+.|+++..++++ ..|++++.|.++.+.|++. ....+. ++......+.+.|||++.|+++|+.||.|+||++
T Consensus 339 -~~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 339 -PLGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred -ecCcceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 234589999999988 7888889999999999765 333343 3344455889999999999999999999999999
Q ss_pred CCC
Q 002086 759 EEH 761 (969)
Q Consensus 759 ~t~ 761 (969)
.++
T Consensus 417 ~tg 419 (459)
T KOG0288|consen 417 FTG 419 (459)
T ss_pred cCc
Confidence 984
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.5e-22 Score=218.30 Aligned_cols=236 Identities=23% Similarity=0.365 Sum_probs=195.8
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
++|...|.+++.|+||+|||||+.|..|.||+.++++.++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---------------------------------------- 238 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK---------------------------------------- 238 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh----------------------------------------
Confidence 3899999999999999999999999999999998765543
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
.+.+|.+.|.+++|-. .+.|++++.|++|++|+++....+.++ +|.+.|.+|....
T Consensus 239 ---------------------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~- 296 (479)
T KOG0299|consen 239 ---------------------VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS- 296 (479)
T ss_pred ---------------------cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-
Confidence 5778999999999987 689999999999999999988877654 9999999999886
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc----
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK---- 681 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~---- 681 (969)
.+..+-+|+.|.++++|++.....+.+.++...+-|++|-.+ ..|++|+.+|.|.+|++...+++..........
T Consensus 297 reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~ 375 (479)
T KOG0299|consen 297 RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD 375 (479)
T ss_pred ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcc
Confidence 566666677999999999988888888888889999999865 689999999999999999887765443321111
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
...+...|++++..|.. .++++|+.+|.|++|.+... ...+....-.+.|++++|+++|+.|++|
T Consensus 376 ~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 376 PVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 01223489999999966 89999999999999986654 3344444466779999999999977666
No 85
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=5.4e-20 Score=201.31 Aligned_cols=402 Identities=17% Similarity=0.220 Sum_probs=270.5
Q ss_pred ccCCcEEEEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccc-
Q 002086 286 SRLGAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANS- 364 (969)
Q Consensus 286 ~~~~~~~~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~- 364 (969)
=|.+-..-+|-+-+|+.+.-.. ....|++++...| +...||+..|.++....+..++++|-.-..-..
T Consensus 63 RG~dcR~Nly~lptgE~vyfvA-----~V~Vl~n~ee~~Q------r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~ 131 (626)
T KOG2106|consen 63 RGVDCRNNLYLLPTGELVYFVA-----AVGVLYNWEERSQ------RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRP 131 (626)
T ss_pred cceeeeceeEEccCccEEEEec-----cEEEEEeehhhhc------ccccCCCCceEEEeecCCceeeccCcccccCCCc
Confidence 3556666678888887755431 3456888877665 678999999999997777777776521111000
Q ss_pred --cccccccccccccc----cccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCccccc
Q 002086 365 --YLSKSLRMSKRRGA----ALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDL 438 (969)
Q Consensus 365 --~~~~~~~~~k~~~~----~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl 438 (969)
-..++|+-.++... ..-+.+.+++|+..-.|...+. .+...... -.+|++
T Consensus 132 ~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~-----------------vD~s~~h~-------lSVWdW 187 (626)
T KOG2106|consen 132 LQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCA-----------------VDDSNPHM-------LSVWDW 187 (626)
T ss_pred CCCeeeecccccceeeeeeccccccceeeeecccCCCceEEE-----------------ecCCCccc-------cchhhc
Confidence 11122322222111 2234566677766433333330 11111111 134455
Q ss_pred ccceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEe---ecCCcc-CcccccccCCCCCccCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSM---SEGNLT-PIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~---~~~~~~-~v~~~~~~~~~~~~~~~g~ 513 (969)
+........+.-...|..+.|+|. .++++|+| -+.+..|+...+.+.+. ++.... .+..+.+...+... .|.
T Consensus 188 qk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi--TgD 264 (626)
T KOG2106|consen 188 QKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI--TGD 264 (626)
T ss_pred hhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE--eec
Confidence 655566666778889999999994 55777776 57799999998877663 333222 12222222222211 111
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCC-CceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCC--------
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSE-KPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMET-------- 584 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t-------- 584 (969)
... ...+|.... +..+....|.+.|.+++...+..|++|+.|..|..||-.-
T Consensus 265 S~G-------------------~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 265 SGG-------------------NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETEL 325 (626)
T ss_pred CCc-------------------eEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccC
Confidence 111 112222221 2223344899999999999988888899999999998421
Q ss_pred ---------------------------------CcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE
Q 002086 585 ---------------------------------KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 585 ---------------------------------~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
+-.+.+++|....+.++.+| +.++|++++.|+.+++|+ ..++.-
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~w 402 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEW 402 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeE
Confidence 00112347889999999999 899999999999999999 566666
Q ss_pred EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 632 WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 632 ~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
.....+++.|+.|+|.| .+++|+..|...+.|.++..++... . ...+++++.|+|+| .+|++|+.|+.|
T Consensus 403 t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~--------~-d~~~ls~v~ysp~G-~~lAvgs~d~~i 471 (626)
T KOG2106|consen 403 TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH--------T-DNEQLSVVRYSPDG-AFLAVGSHDNHI 471 (626)
T ss_pred EEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE--------e-cCCceEEEEEcCCC-CEEEEecCCCeE
Confidence 66677889999999999 9999999999999999986654432 2 27889999999999 899999999999
Q ss_pred EEEeCCcceEEEE--eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 712 RILDGLDIVHKFR--GFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 712 ~IwD~~~~~~~~~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
+||-+......+. +..+..+|+.+.|++|++||.+-+.|-.|..|.-
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 9998554333222 2223388999999999999999999999999943
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=6.4e-22 Score=213.23 Aligned_cols=252 Identities=21% Similarity=0.303 Sum_probs=213.7
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
+.+..+++.+|+||...|+.+.|+++...+++++.|..|+||.+......
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~------------------------------ 296 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP------------------------------ 296 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc------------------------------
Confidence 55667788899999999999999999999999999999999997642211
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecC-
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHN- 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~- 594 (969)
.....|..+|+.+..+| +.||++++.||+..+.|++++.++....+.
T Consensus 297 -------------------------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 297 -------------------------------TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred -------------------------------cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 13456999999999999 999999999999999999999999888664
Q ss_pred --CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 595 --DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 595 --~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
-.+++++|+| ++..|.+|..||.|+|||+..+.. ..+-+|.++|..++|+.+|-+|++++.|+.|++||++..+..
T Consensus 346 s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 346 SDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred ccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 3589999999 999999999999999999988764 456678899999999999999999999999999999987754
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC--CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG--LDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~--~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
+.... .....+..+.|.+.| .+|++++.|-.|++++. .+.......+.|.+..+.+.|....+++++++.
T Consensus 425 kt~~l-------~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 425 KTIQL-------DEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred ceeec-------cccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc
Confidence 44332 233479999999988 88999988888888883 234444455556677889999999999999999
Q ss_pred CCcEEEEEc
Q 002086 750 DSQVYVWKR 758 (969)
Q Consensus 750 Dg~I~IWdl 758 (969)
|..++++.+
T Consensus 497 d~~l~~~a~ 505 (506)
T KOG0289|consen 497 DAILRLYAL 505 (506)
T ss_pred hhheEEeec
Confidence 999998865
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.5e-22 Score=207.02 Aligned_cols=251 Identities=18% Similarity=0.373 Sum_probs=215.5
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+++++|.||.+.|+.++.......+.|++.|.+.+||.+++|.++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~--------------------------------- 184 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA--------------------------------- 184 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee---------------------------------
Confidence 45778899999999999998877899999999999999999887765
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEEC------CC---------
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDM------ET--------- 584 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl------~t--------- 584 (969)
.+.||.+.|.+|.|++ +.++++++.|++..||.. ..
T Consensus 185 ----------------------------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSs 236 (481)
T KOG0300|consen 185 ----------------------------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSS 236 (481)
T ss_pred ----------------------------eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCc
Confidence 5778999999999999 899999999999999972 10
Q ss_pred ---------------------CcEE----EEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCC
Q 002086 585 ---------------------KSCL----KLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHE 637 (969)
Q Consensus 585 ---------------------~~~i----~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~ 637 (969)
+..+ ..+ +|...|.+..|.. .++.+++++.|.+..+||+++++++. +.+|..
T Consensus 237 EeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ 315 (481)
T KOG0300|consen 237 EEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDS 315 (481)
T ss_pred hhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcch
Confidence 1111 112 7999999999998 89999999999999999999999876 456778
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
..+.++-+|..+++++.+.|-+.++||++.. +... ..+.+|...|+++.|.-+. .+++|+.|.+|++||++
T Consensus 316 ELtHcstHptQrLVvTsSrDtTFRLWDFRea-I~sV------~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 316 ELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-IQSV------AVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLR 386 (481)
T ss_pred hccccccCCcceEEEEeccCceeEeccchhh-ccee------eeecccccceeEEEEecCC--ceeecCCCceEEEeeec
Confidence 8999999999999999999999999999832 2222 2237899999999999875 89999999999999988
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+....+.......+++.++.+..+..|+.--.+..|++||++..+
T Consensus 387 NMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 387 NMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred cccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 877777667778889999999988899999999999999998754
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=8.9e-22 Score=214.04 Aligned_cols=261 Identities=21% Similarity=0.287 Sum_probs=213.4
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe-ecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM-SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~-~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
...+..|.-+|+||+++||++++++++.|++|.=|++.+|..... .+...
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~e----------------------------- 185 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDE----------------------------- 185 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccch-----------------------------
Confidence 566788999999999999999999999999999999998875521 11000
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEe-ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSF-IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l-~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
+....+.++..- .+|...|.+++.++ +.+|++|+.|..|.||+.++.+.++.+ +|.+.|.+
T Consensus 186 ----------------v~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~ 249 (479)
T KOG0299|consen 186 ----------------VLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSS 249 (479)
T ss_pred ----------------hhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceee
Confidence 000001111111 48999999999999 899999999999999999999999997 89999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++|-. ..+.+++++.|.+|++|++..... -.+++|++.|..|....-++.+-+|+.|.++++|++.......
T Consensus 250 L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli------ 322 (479)
T KOG0299|consen 250 LAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI------ 322 (479)
T ss_pred eeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceee------
Confidence 99987 778999999999999999987654 4578899999999999888888889999999999995543321
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee------------cCCCCeEEEEEeCCCCEEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF------------RNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~------------~~~~~V~sl~fspdg~~LaS 746 (969)
..++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+....+... .+...|++++..|...++++
T Consensus 323 ---frg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~as 397 (479)
T KOG0299|consen 323 ---FRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLAS 397 (479)
T ss_pred ---eeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEe
Confidence 2677889999999876 499999999999999976654444321 11126889999999999999
Q ss_pred EeCCCcEEEEEcCCC
Q 002086 747 ASEDSQVYVWKREEH 761 (969)
Q Consensus 747 gs~Dg~I~IWdl~t~ 761 (969)
|+.+|.|++|.+.++
T Consensus 398 GS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 398 GSWSGCVRLWKIEDG 412 (479)
T ss_pred cCCCCceEEEEecCC
Confidence 999999999999985
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=222.46 Aligned_cols=406 Identities=15% Similarity=0.170 Sum_probs=270.0
Q ss_pred cCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeE
Q 002086 309 SENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVA 388 (969)
Q Consensus 309 ~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~ 388 (969)
++.|. ++||++.++|. +..+.++-..|+++...+--+.++-|-.++.+..+. ++..+..-.++.-.|.+
T Consensus 179 s~~G~-lql~Nvrt~K~-----v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifN-----lK~dkil~sFk~d~g~V 247 (910)
T KOG1539|consen 179 SSQGR-LQLWNVRTGKV-----VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFN-----LKFDKILMSFKQDWGRV 247 (910)
T ss_pred ecCCc-EEEEEeccCcE-----EEEecccccceeEeccCCcceEEEEeccCceEEEEE-----cccCcEEEEEEccccce
Confidence 34344 57999999998 456678889999999766666666554555443332 22223222333334667
Q ss_pred EEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEec-ccccCEEEEEEeCCCCEEE
Q 002086 389 HSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ-AHEGSIWTIKFSLDARFLA 467 (969)
Q Consensus 389 ~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~La 467 (969)
.+++|.-|... +++. +.....+ .+|||..-++...++ +|.+.|..+.|.|....|+
T Consensus 248 tslSFrtDG~p-----~las-----------~~~~G~m-------~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ 304 (910)
T KOG1539|consen 248 TSLSFRTDGNP-----LLAS-----------GRSNGDM-------AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLV 304 (910)
T ss_pred eEEEeccCCCe-----eEEe-----------ccCCceE-------EEEEcCCCeeeeeeeccccCCcccceecCCCceEe
Confidence 77776644432 2222 1111112 245777666666666 9999999999999999999
Q ss_pred EEeCCCcEEEEecccc----eEEEeecCCccCcccccccCCCCCccCCCCCCC-CCcccccCCCCCCCCcccccceeeec
Q 002086 468 SAGEDRVIHVWEVQEC----EVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN-PPPEKKKKGKHSSPDYVHVPETVFSL 542 (969)
Q Consensus 468 Tgs~DgtVrIWDl~tg----~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 542 (969)
|++.|+.+++|=.+++ .+++...||..|...+.+............... ........ ......... .....
T Consensus 305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~-e~~~~~l~~---~~~~~ 380 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS-ESQSQELGQ---LHNKK 380 (910)
T ss_pred eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH-HHHhHhhcc---ccccc
Confidence 9999999999977644 345556677766665555543322221111111 00000000 000000000 00000
Q ss_pred CCCcee---EeccCCCCEEEEEecC------CcEEEEEeCCCcEEEEECCCCcE-EEEeecC------CCeEEEEEecCC
Q 002086 543 SEKPFC---SFIGHLDDVLDLSWSR------SHLLLSSSMDKTVRLWDMETKSC-LKLFAHN------DYVTCIQFNPMD 606 (969)
Q Consensus 543 ~~k~~~---~l~gH~~~I~~l~fs~------~~~L~Sgs~DgtV~IWDl~t~~~-i~~~~h~------~~V~sv~fsp~~ 606 (969)
..+.+. ...-.-.+|..+++.. ++.++..-.+..++.|++++... ..++.+. ..+++++.++ +
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-C 459 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-C 459 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-c
Confidence 000110 1112234667777653 35566666778899999998766 4455554 7899999999 9
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEe----cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWT----DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~----~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
|++.+.|+..|.|-+|++++|.....+ .|..+|+.++...-++.+++++.+|.+.+||.....+....
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-------- 531 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL-------- 531 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee--------
Confidence 999999999999999999999887766 67899999999999999999999999999999887654332
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.-...++++.++... ..++++..|-.|+++|.......-....|...|++++|||||++|++++.|++|++||+.++.
T Consensus 532 -~l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 532 -RLGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred -ccCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 234567788888766 688999999999999965433333334456779999999999999999999999999999854
Q ss_pred c
Q 002086 763 N 763 (969)
Q Consensus 763 ~ 763 (969)
+
T Consensus 610 l 610 (910)
T KOG1539|consen 610 L 610 (910)
T ss_pred e
Confidence 3
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=4.8e-22 Score=205.87 Aligned_cols=210 Identities=25% Similarity=0.418 Sum_probs=177.8
Q ss_pred eeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-----------------C-cEEEEe-ecCCCeEEEEEecCC
Q 002086 547 FCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-----------------K-SCLKLF-AHNDYVTCIQFNPMD 606 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-----------------~-~~i~~~-~h~~~V~sv~fsp~~ 606 (969)
.+.+..|..++.+.+|++ |.++++|+.|..|+|.|++. + ..++++ .|.++|+++.|+| .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 346778999999999999 89999999999999999861 1 234444 8999999999999 8
Q ss_pred CCEEEEEECCCeEEEEeCCCce---EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 607 DDYFISGSLDAKVRIWSISDRL---VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~---~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
...|++|+.|++|++||+.... -.+.+....+|.++.|+|.|.+|++|....++++||+.+.++.... ....
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-----nPd~ 258 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-----NPDD 258 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-----Cccc
Confidence 9999999999999999997643 3345556688999999999999999999999999999988764332 2337
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.|...|+++.+++.+ .+.++++.||.|+|||.- .++..+........|.+..|+.+|+||++.+.|..|++|.+.++
T Consensus 259 qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 789999999999988 899999999999999954 34555555555677999999999999999999999999999985
Q ss_pred Cc
Q 002086 762 RN 763 (969)
Q Consensus 762 ~~ 763 (969)
+.
T Consensus 338 R~ 339 (430)
T KOG0640|consen 338 RM 339 (430)
T ss_pred ce
Confidence 43
No 91
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.6e-22 Score=201.07 Aligned_cols=201 Identities=19% Similarity=0.333 Sum_probs=170.0
Q ss_pred CCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC-cEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 553 HLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK-SCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 553 H~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~-~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
-.+.+.+++|++ .+.+++++.||+++|||+... .++..+ .|...|.++.|++.....+++++.|++|++|+.....
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 457789999998 789999999999999996543 345555 7999999999999888899999999999999997655
Q ss_pred -EEEEecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 629 -VVDWTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 629 -~~~~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
+..+.+|...|....|+|. .+.+++++.|+++++||++....... ...|...|.++.|+..+...+++|+
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEeccceeEeecccccCCcEEEecC
Confidence 5567788899999999995 67899999999999999986543222 2567889999999999989999999
Q ss_pred CCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCC
Q 002086 707 ADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNAD-GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.|+.|++||+++.. ..+....|.-.|..+.|||. ...|++++.|-+++|||...+
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 99999999987643 34455677888999999995 478999999999999999864
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-20 Score=188.29 Aligned_cols=248 Identities=21% Similarity=0.303 Sum_probs=201.9
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+.-+.|.+.|+|.+|+|+|++||||+.|++|++.-+....+..
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~------------------------------------- 125 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA------------------------------------- 125 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc-------------------------------------
Confidence 3456799999999999999999999999999997654321110
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-----CcEEEEEe-CCCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-----SHLLLSSS-MDKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-----~~~L~Sgs-~DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
..+-.+|.-|.+.|.+++|.. +.+|++++ .|..|++-|..+|+....+ +|++.|
T Consensus 126 -------------------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 126 -------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred -------------------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 001125667999999999964 45677665 5778888899999988777 899999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.++--- ++-.|++|+.|.+|++||++-...+...+.. ..|.+++..|.|++|++|-.|..+.+||++.+.
T Consensus 187 lalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 187 LALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc
Confidence 887543 6899999999999999999987776554321 469999999999999999999999999999999
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----ceEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD----IVHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----~~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
+++.+ ..|...|.++.|+|.- .++++++.|..|++-|+.. .........|...+..+.|+|..--++
T Consensus 265 ~iq~f--------~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 265 MIQRF--------HPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred eeeee--------CCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceee
Confidence 76654 6789999999999966 8999999999999999542 223334455677788999999988899
Q ss_pred EEeCCCcEEEEEcC
Q 002086 746 SASEDSQVYVWKRE 759 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~ 759 (969)
+.+.|.++.+|-+.
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 99999999999874
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=9.7e-22 Score=214.12 Aligned_cols=254 Identities=21% Similarity=0.329 Sum_probs=203.2
Q ss_pred ccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 449 AHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 449 gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
-|.+.|+.+.+.|.. ..+||++..+.|.|||..+-.-.....
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------------------------------------- 164 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------------------------------------- 164 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------------------------------------
Confidence 599999999999965 477888889999999987422111000
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE-------EEEe-ecCCCe
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC-------LKLF-AHNDYV 597 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~-------i~~~-~h~~~V 597 (969)
....|-..|.||.+.=++|+|++ ...|++++.|++|++||+..... ...+ +|...|
T Consensus 165 --------------~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~V 230 (422)
T KOG0264|consen 165 --------------GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVV 230 (422)
T ss_pred --------------ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcce
Confidence 01234447899999889999998 68999999999999999975433 1223 899999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCC--ceE-EEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISD--RLV-VDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~--~~~-~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
..++|++.+..+|.+++.|+.+.|||+++ .++ .....|...|.|++|+|-+ ..||+|+.|++|.+||+++....
T Consensus 231 eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~-- 308 (422)
T KOG0264|consen 231 EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP-- 308 (422)
T ss_pred ehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--
Confidence 99999998889999999999999999995 332 3456678999999999954 56778999999999999987652
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--------------EEEEeecCCCCeEEEEEeC
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--------------HKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--------------~~~~~~~~~~~V~sl~fsp 739 (969)
.....+|...|.++.|+|.....|++++.|+.+.+||+.... ..|.--+|...|..+.|+|
T Consensus 309 -----lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp 383 (422)
T KOG0264|consen 309 -----LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP 383 (422)
T ss_pred -----ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC
Confidence 223378999999999999998999999999999999954322 1244445777899999999
Q ss_pred CCC-EEEEEeCCCcEEEEEcCC
Q 002086 740 DGK-YIISASEDSQVYVWKREE 760 (969)
Q Consensus 740 dg~-~LaSgs~Dg~I~IWdl~t 760 (969)
+.. .|++.++|+.+.||+...
T Consensus 384 ~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 384 NEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCeEEEEecCCceEEEeeccc
Confidence 765 577889999999999874
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.6e-21 Score=199.76 Aligned_cols=241 Identities=19% Similarity=0.299 Sum_probs=199.3
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-++.|..|.|+|.+..|+.++.||.+++||+...++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~------------------------------------------ 49 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL------------------------------------------ 49 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh------------------------------------------
Confidence 47889999999998889989999999999987543221
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCE
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDY 609 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~ 609 (969)
...|..++.+++|.+...+++|+.||.|+.+|+.++.....-.|..+|.||.+.+ ..+.
T Consensus 50 --------------------~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~ 108 (323)
T KOG1036|consen 50 --------------------KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGC 108 (323)
T ss_pred --------------------heecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCe
Confidence 2248899999999998999999999999999999999999999999999999998 8899
Q ss_pred EEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 610 FISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 610 L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
+++|+.|++|++||.+.......+.....|.++... |+.|++|+.+..+.+||+++..... +.....-...+
T Consensus 109 vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~------q~reS~lkyqt 180 (323)
T KOG1036|consen 109 VISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF------QRRESSLKYQT 180 (323)
T ss_pred EEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh------hhccccceeEE
Confidence 999999999999999987666666666788888775 6799999999999999999876532 12224456678
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEe--CC----cceEEEEeecC-------CCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILD--GL----DIVHKFRGFRN-------TSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD--~~----~~~~~~~~~~~-------~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
.|+++.|.+ .-+++++-||.|.+=. .. ...-.|+.|.. ..+|++++|+|--+.||||+.||.|.+|
T Consensus 181 R~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 181 RCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW 259 (323)
T ss_pred EEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc
Confidence 999999955 6789999999988743 32 22333444432 2468899999999999999999999999
Q ss_pred EcCCCC
Q 002086 757 KREEHR 762 (969)
Q Consensus 757 dl~t~~ 762 (969)
|+.+.+
T Consensus 260 d~~~rK 265 (323)
T KOG1036|consen 260 DLFNRK 265 (323)
T ss_pred cCcchh
Confidence 999854
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1e-21 Score=199.96 Aligned_cols=268 Identities=21% Similarity=0.334 Sum_probs=217.7
Q ss_pred eEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 548 CSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
..+.+|...|.+|+|+- +..|++|+.|+++.+|++......+.. +|.+.|-.++|+|...++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 36788999999999997 899999999999999999988655543 79999999999998889999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 624 ISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 624 l~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
++.+++.........-.-++|+|+|++++++..|..|.+.|.++.+.....+ ....+..+.|+-++ .+++
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~---------~~~e~ne~~w~~~n-d~Ff 163 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ---------FKFEVNEISWNNSN-DLFF 163 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc---------ccceeeeeeecCCC-CEEE
Confidence 9999988888777777789999999999999999999999999887755432 34567788899666 6888
Q ss_pred EEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeee
Q 002086 704 VTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCK 783 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~ 783 (969)
.....|+|.|.....+........|.....|+.|+|+|+|||+|+.|-.+-+||+++.- |.
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi-------------------C~ 224 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI-------------------CE 224 (313)
T ss_pred EecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh-------------------hh
Confidence 88888999998877766666777788889999999999999999999999999998722 11
Q ss_pred eeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccccc
Q 002086 784 DVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLIS 863 (969)
Q Consensus 784 ~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is 863 (969)
....-..|+ .....||-+|+.++++++|+.+-+-...++.-.-.. ..+.+...++
T Consensus 225 R~isRldwp------------------------VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~~~~~t~tVA 279 (313)
T KOG1407|consen 225 RCISRLDWP------------------------VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-PCEGPTFTVA 279 (313)
T ss_pred eeeccccCc------------------------eEEEEeccCcceeeccCccceEEeEecccCCeEEEe-eccCCceeEE
Confidence 111111111 123457888999999999998877777766544332 3455667899
Q ss_pred cCCCCC
Q 002086 864 HDPGIS 869 (969)
Q Consensus 864 ~hP~~~ 869 (969)
|||.-.
T Consensus 280 WHPk~~ 285 (313)
T KOG1407|consen 280 WHPKRP 285 (313)
T ss_pred ecCCCc
Confidence 999944
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.3e-22 Score=228.33 Aligned_cols=299 Identities=16% Similarity=0.226 Sum_probs=205.5
Q ss_pred CCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHH
Q 002086 336 GHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQ 415 (969)
Q Consensus 336 GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~ 415 (969)
.|.+.|.++.|..++..+|+|+.|..+..|....-.. ... .+....+..+.+.-.+....+.+.. ........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~-~~~~~~~~~~~~~~~s~~~p~~s~~---~~~~~~~s 337 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRV-AEGDSSCMYFEYNANSQIEPSTSSE---EKISSRTS 337 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch---hcc-cccccchhhhhhhhccccCcccccc---cccccccc
Confidence 8999999999999999999999999887774221000 000 1111111111111011100000000 00000000
Q ss_pred hh-ccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc
Q 002086 416 KQ-NKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT 494 (969)
Q Consensus 416 ~~-~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~ 494 (969)
.. ....... +....+.-.+ .-+.+++|+||.+.|..|.||.+ .+|+|+|.|+|||||++...+++..+
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f----~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----- 406 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVF----SEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----- 406 (712)
T ss_pred ccccccCCcc-ccCCCccccc----cccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-----
Confidence 00 0000000 1111111001 12456789999999999999965 48999999999999999987776532
Q ss_pred CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEe
Q 002086 495 PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSS 572 (969)
Q Consensus 495 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs 572 (969)
.|.+-|+||+|+| +++|++|+
T Consensus 407 ---------------------------------------------------------~HndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 407 ---------------------------------------------------------SHNDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred ---------------------------------------------------------ecCCeeEEEEecccCCCcEeecc
Confidence 3999999999999 79999999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec---------CCCCEEEEE
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---------LHEMVTAAC 643 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---------~~~~V~sv~ 643 (969)
.||.|+||++...+.+.-..-..-|++++|.| +|++.+.|+.+|.+++|+....++..... ....|+.+.
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence 99999999999998888777779999999999 89999999999999999998876653221 123699999
Q ss_pred EccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 644 YTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 644 fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
|.|.. ..+++.+.|..|+|||.++..++..+. .......-....|+.+| .+|++++.|..|+||+..
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK------G~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK------GFRNTSSQISASFSSDG-KHIVSASEDSWVYIWKND 576 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccchhhhhhhc------ccccCCcceeeeEccCC-CEEEEeecCceEEEEeCC
Confidence 99854 468899999999999998776543321 11223334566788887 899999999999999954
No 97
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=1.9e-20 Score=211.81 Aligned_cols=359 Identities=17% Similarity=0.213 Sum_probs=239.7
Q ss_pred cceeeeEecccccCEEEEEEeCCCC---EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDAR---FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~---~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
.++.+.+|.||++.|.+|+|...+. +|||+|+|.+||||.+.-+............ .
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~-------------------t- 239 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL-------------------T- 239 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc-------------------c-
Confidence 5678899999999999999997544 8999999999999998633211100000000 0
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc--EEEE--e
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS--CLKL--F 591 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~--~i~~--~ 591 (969)
.....+.+.......+.+. .-..+.||.+.|+++.|+| +-.|++++.|+++.+|...+.. -+.. +
T Consensus 240 --------~~~~~~~f~~l~~i~~~is--~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl 309 (764)
T KOG1063|consen 240 --------TLSNLPVFMILEEIQYRIS--FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL 309 (764)
T ss_pred --------cccCCceeeeeeeEEEEEe--hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEe
Confidence 0000000000000000000 0124569999999999999 6699999999999999877652 2222 2
Q ss_pred ----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 592 ----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 592 ----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
+.....+...|+| +++.+++-+.-|..++|-.... ......+|.+.|..++|+|.|++|++.+.|.+-|+|
T Consensus 310 Ge~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 310 GEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred ecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeee
Confidence 2345689999999 8999999999999999994432 223455678899999999999999999999988886
Q ss_pred EcCCCc--------------------eee---------------eeee--------------------------------
Q 002086 664 SIEDSK--------------------LHQ---------------LNQV-------------------------------- 676 (969)
Q Consensus 664 Dl~~~~--------------------~~~---------------~~~~-------------------------------- 676 (969)
---..+ .++ .+..
T Consensus 389 a~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 389 ARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred cccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 432000 000 0000
Q ss_pred -----------------------------------------------eecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 677 -----------------------------------------------DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 677 -----------------------------------------------~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
+-..+..+|...|++++.+|++ +++++++...
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~ 547 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSS 547 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhC
Confidence 0112457889999999999988 7888886543
Q ss_pred -----cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeee
Q 002086 710 -----RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKD 784 (969)
Q Consensus 710 -----~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~ 784 (969)
.|++|+............|.-.|+.++|||||+||++.+.|.++.+|...+..... .. |
T Consensus 548 ~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e--~~----------f---- 611 (764)
T KOG1063|consen 548 LKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE--FR----------F---- 611 (764)
T ss_pred CccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh--hh----------h----
Confidence 49999988877666677788899999999999999999999999999986531110 00 1
Q ss_pred eEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCC--ccccC--CCCCCCCcc
Q 002086 785 VSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTN--KVERV--PSPPEEELS 860 (969)
Q Consensus 785 ~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~--~~~~~--l~~pee~l~ 860 (969)
....++...+| .+.++|++-..++.++|..+.+|..... +-+.. .....+.+.
T Consensus 612 ----------a~~k~HtRIIW-------------dcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVT 668 (764)
T KOG1063|consen 612 ----------ACLKAHTRIIW-------------DCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVT 668 (764)
T ss_pred ----------ccccccceEEE-------------EcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCcee
Confidence 11223344444 3456777776778888888888865433 11111 123445666
Q ss_pred ccccCCCCC
Q 002086 861 LISHDPGIS 869 (969)
Q Consensus 861 ~is~hP~~~ 869 (969)
+++++|.+.
T Consensus 669 Av~~~~~~~ 677 (764)
T KOG1063|consen 669 AVAYLPVDH 677 (764)
T ss_pred eEEeecccc
Confidence 777766544
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=4.2e-21 Score=207.00 Aligned_cols=238 Identities=18% Similarity=0.316 Sum_probs=202.6
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|+++...+....++|||.|.++.++|...++.+.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~------------------------------------------- 255 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA------------------------------------------- 255 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh-------------------------------------------
Confidence 3578899999887899999999999999988665543
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~ 608 (969)
.|.||+..|+.+.|++ ...+++++.|..|+||......+.... .|..+|+.+..+| ++.
T Consensus 256 ------------------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tge 316 (506)
T KOG0289|consen 256 ------------------TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGE 316 (506)
T ss_pred ------------------hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCc
Confidence 6789999999999999 788999999999999999877765554 8999999999999 999
Q ss_pred EEEEEECCCeEEEEeCCCceEEEEecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 609 YFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
||++++.||+..+.|++++..+....+. -.+++++|+|||..|.+|..||.++|||+....... ++.+|
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a--------~Fpgh 388 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA--------KFPGH 388 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc--------cCCCC
Confidence 9999999999999999999877665553 348999999999999999999999999998876432 23779
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.++|..++|+.+| .+|++++.|+.|++||+++... .+... ....+.+++|.+.|.||+.++.|=.|++++-.+
T Consensus 389 t~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 389 TGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 9999999999987 9999999999999999886542 23222 223688999999999999998887777776544
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.1e-21 Score=198.10 Aligned_cols=249 Identities=18% Similarity=0.301 Sum_probs=200.6
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
..|++.|-.+...--|++||||+.|++|||+.+.....
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 47999999888888899999999999999999875321
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEec-C--CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS-R--SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQ 601 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~ 601 (969)
.+++.+|.||.++|+.++|. | +.+|++++.||.|.||.-.+++-.+.. .|...|++|+
T Consensus 46 ----------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~ 109 (299)
T KOG1332|consen 46 ----------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVA 109 (299)
T ss_pred ----------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeec
Confidence 12345899999999999995 5 899999999999999999998655444 7999999999
Q ss_pred EecCC-CCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccC---C-----------CEEEEEeCCCcEEE
Q 002086 602 FNPMD-DDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPD---G-----------QNALIGSHKGSCRL 662 (969)
Q Consensus 602 fsp~~-~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspd---g-----------~~Lasgs~dg~I~I 662 (969)
|.|.+ +-.|++++.||.|.|.+.+.. .......|.-.|++++|.|. | +.|++|+.|..|+|
T Consensus 110 wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vki 189 (299)
T KOG1332|consen 110 WAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKI 189 (299)
T ss_pred ccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceee
Confidence 99943 347889999999999998765 12234567778999999985 4 56999999999999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC---CceEEEEeCCCcEEEEeCCcceEEE---EeecCCCCeEEEE
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN---PSEVLVTSADSRIRILDGLDIVHKF---RGFRNTSSQISAA 736 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~---~~~l~sgs~Dg~I~IwD~~~~~~~~---~~~~~~~~V~sl~ 736 (969)
|+...+... ......+|...|..++|.|.. ...|++++.||++.||......... ..+.....+..++
T Consensus 190 W~~~~~~w~------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vS 263 (299)
T KOG1332|consen 190 WKFDSDSWK------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVS 263 (299)
T ss_pred eecCCcchh------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEE
Confidence 999887432 223358899999999999964 3579999999999999854321111 1223456688999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 737 FNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 737 fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
||..|.+|+.++.|+.|.+|.=+.
T Consensus 264 WS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 264 WSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EeccccEEEEecCCcEEEEEEeCC
Confidence 999999999999999999998653
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.5e-21 Score=199.65 Aligned_cols=321 Identities=18% Similarity=0.285 Sum_probs=234.8
Q ss_pred EEEEeeCC--CCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccc
Q 002086 291 FFLIKNLD--TGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSK 368 (969)
Q Consensus 291 ~~~i~~ld--~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~ 368 (969)
.-.||+.. .++- ++..-+.| +..++|.+++|+. +.+..||.+.|+++.+.+....+.|+++|.+.-.|.-.
T Consensus 148 kDGiW~Vaa~~tqp-i~gtASAD-hTA~iWs~Esg~C-----L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 148 KDGIWHVAADSTQP-ICGTASAD-HTARIWSLESGAC-----LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred ccceeeehhhcCCc-ceeecccc-cceeEEeeccccc-----eeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 33467753 4444 66666774 5578999999998 46789999999999999999999999999876666421
Q ss_pred c-ccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEe
Q 002086 369 S-LRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEI 447 (969)
Q Consensus 369 ~-~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L 447 (969)
+ |...+... -..+ +++.+.-.... ......+.......-|+ -.+..|
T Consensus 221 v~~~vP~~~a---~~~h---------SsEeE~e~sDe------~~~d~d~~~~sD~~tiR--------------vPl~~l 268 (481)
T KOG0300|consen 221 VNWEVPSNNA---PSDH---------SSEEEEEHSDE------HNRDTDSSEKSDGHTIR--------------VPLMRL 268 (481)
T ss_pred hcCcCCCCCC---CCCC---------Cchhhhhcccc------cccccccccccCCceee--------------eeeeee
Confidence 1 11111100 0000 00000000000 00000000000000111 235679
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.+|.+.|.++.|-..|+.++|++.|.+..+||+++|+++.
T Consensus 269 tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~---------------------------------------- 308 (481)
T KOG0300|consen 269 TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN---------------------------------------- 308 (481)
T ss_pred eccccceEehhhhcCcceeeeeeccccceeeeeccCceec----------------------------------------
Confidence 9999999999999999999999999999999999988765
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc-EEEEe-ecCCCeEEEEEec
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS-CLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~-~i~~~-~h~~~V~sv~fsp 604 (969)
.+.||....+.++-+| ..++++++.|.+.++||++..- .+.+| +|...|+++.|..
T Consensus 309 ---------------------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 309 ---------------------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred ---------------------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 5668888999899898 7889999999999999998432 34455 8999999999985
Q ss_pred CCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
+..+++|+.|.+|+|||+++. ..+..+....+++.++.+..+..|+.--.+..|++||+....+... ......
T Consensus 368 --dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl----PrtsRq 441 (481)
T KOG0300|consen 368 --DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL----PRTSRQ 441 (481)
T ss_pred --CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccC----Cccccc
Confidence 788999999999999999875 4667777888999999999888999999999999999998776433 223347
Q ss_pred CCCCCeEEEEEcCCCC-ceEEEEeCCCcEEEEeCC
Q 002086 684 SSTRKITGFQFSPSNP-SEVLVTSADSRIRILDGL 717 (969)
Q Consensus 684 ~h~~~It~l~fspd~~-~~l~sgs~Dg~I~IwD~~ 717 (969)
+|..-|+|++|..+-+ ..|++++.|..+.-|.+.
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 8999999999986432 358889999999999854
No 101
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.4e-21 Score=210.20 Aligned_cols=274 Identities=19% Similarity=0.288 Sum_probs=205.8
Q ss_pred cceeeeec-ccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhh
Q 002086 339 PVVKELMR-RENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQ 417 (969)
Q Consensus 339 ~~V~~l~~-~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~ 417 (969)
..|.++++ ++.|+-++..+... +..|....-... ..+-..+-.+++..|..|...+..+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~r-vqly~~~~~~~~-----k~~srFk~~v~s~~fR~DG~LlaaG-------------- 86 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVR-VQLYSSVTRSVR-----KTFSRFKDVVYSVDFRSDGRLLAAG-------------- 86 (487)
T ss_pred CcceeEecCCCCCCceEEecccE-EEEEecchhhhh-----hhHHhhccceeEEEeecCCeEEEcc--------------
Confidence 56888885 66776655443332 222321111001 1122233455666665555443332
Q ss_pred ccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 418 NKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 418 ~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
+..+.+-|+ |+++-..++.+++|+.+|..+.|+|+ +..|++|+.|+.+++||+.+....
T Consensus 87 -D~sG~V~vf---------D~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~---------- 146 (487)
T KOG0310|consen 87 -DESGHVKVF---------DMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ---------- 146 (487)
T ss_pred -CCcCcEEEe---------ccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE----------
Confidence 233333333 44445567789999999999999994 568899999999999999875531
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCC
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMD 574 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~D 574 (969)
..+.+|++.|.|.+|+| +.+++||++|
T Consensus 147 ---------------------------------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 147 ---------------------------------------------------AELSGHTDYVRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred ---------------------------------------------------EEecCCcceeEeeccccCCCeEEEecCCC
Confidence 26788999999999999 6799999999
Q ss_pred CcEEEEECCCC-cEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEEe-cCCCCEEEEEEccCCCEE
Q 002086 575 KTVRLWDMETK-SCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDWT-DLHEMVTAACYTPDGQNA 651 (969)
Q Consensus 575 gtV~IWDl~t~-~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~-~~~~~V~sv~fspdg~~L 651 (969)
|+|++||++.. ..+..+.|..+|..+.+.| .+..|++++. ..|+|||+.+ ++.+... .|+..|+|+++..++..|
T Consensus 176 g~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 176 GKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred ceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence 99999999987 7888889999999999999 8899998874 6799999985 4555444 488999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 652 LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 652 asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
++|+-|+.+++||+.+.+..... ...++|.+++.+|++ +.+++|-.+|.+.+-+
T Consensus 254 lS~sLD~~VKVfd~t~~Kvv~s~---------~~~~pvLsiavs~dd-~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTNYKVVHSW---------KYPGPVLSIAVSPDD-QTVVIGMSNGLVSIRR 307 (487)
T ss_pred eecccccceEEEEccceEEEEee---------ecccceeeEEecCCC-ceEEEecccceeeeeh
Confidence 99999999999998887765442 346899999999987 8999999999887763
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-21 Score=220.22 Aligned_cols=248 Identities=20% Similarity=0.326 Sum_probs=204.7
Q ss_pred cccCEE---EEEEe-CCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 450 HEGSIW---TIKFS-LDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 450 H~~~I~---~l~fS-pDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
|...|. .+..+ |.++||+|||.||.|++|++.......
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------------------------------- 61 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-------------------------------------- 61 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence 444454 34444 367789999999999999986321100
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC--cEEEEe-ecCCCeEEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK--SCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~--~~i~~~-~h~~~V~sv~ 601 (969)
+......+..|.++|.++.... ++.|+++|.|-+|++|+...+ -|+.++ .|.+.|.|++
T Consensus 62 -----------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla 124 (735)
T KOG0308|consen 62 -----------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLA 124 (735)
T ss_pred -----------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeee
Confidence 0011336778999999999887 789999999999999999887 466666 7999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceE--E---------EEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLV--V---------DWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~---------~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
+-..+..++++|+.|+.|.+||+.++.- + .+. ++...|++++.++.|..|+.|+..+.+++||.++.+
T Consensus 125 ~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 125 YIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred ecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc
Confidence 9333888999999999999999997621 1 122 566789999999999999999999999999999987
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
.... ..+|...|.++..+++| ..+++++.||+|++||+....+....+.|...|.++..+|+-.++++|+.
T Consensus 205 kimk--------LrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 205 KIMK--------LRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred ceee--------eeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC
Confidence 5432 26899999999999998 89999999999999999887777777778888999999999999999999
Q ss_pred CCcEEEEEcCCC
Q 002086 750 DSQVYVWKREEH 761 (969)
Q Consensus 750 Dg~I~IWdl~t~ 761 (969)
||.|+.=|+.++
T Consensus 276 d~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 276 DGNIYRTDLRNP 287 (735)
T ss_pred CCcEEecccCCc
Confidence 999999999985
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1e-20 Score=213.16 Aligned_cols=365 Identities=16% Similarity=0.155 Sum_probs=256.8
Q ss_pred CCcEEEEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeee-cccc----------cccccCC
Q 002086 288 LGAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELM-RREN----------VNRINDS 356 (969)
Q Consensus 288 ~~~~~~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~-~~~~----------~~~~~t~ 356 (969)
-|..-+.+|..+.+...|-. .+-+.|||+..=+.++ ....+.-|+.-|..+. .+-+ +..++|+
T Consensus 325 PD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~~kvg--k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TC 398 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYN----DHSLYVWDVRDVNKVG--KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTC 398 (1080)
T ss_pred CceeEEEecCCCceEEEEEc----CceEEEEecccccccc--ceeeeeeccceeeeeccccccccCcccccCCccceeEe
Confidence 56667777766666655542 4557899998766554 2455677888888887 3311 2347788
Q ss_pred CCcccccccccccccccccccccccceeeeeEEEeeecCCccc-cCCCCcccchHHHHHHhhccccCcceEEEccCCCcc
Q 002086 357 AGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKEC-INPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSY 435 (969)
Q Consensus 357 s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l 435 (969)
+.|.++..|.... -..... ..+++. +.+... .+. .+..+.+.+...+..-
T Consensus 399 SsD~TIRlW~l~~---ctnn~v-yrRNil--------s~~l~ki~y~-----------------d~~~q~~~d~~~~~fd 449 (1080)
T KOG1408|consen 399 SSDGTIRLWDLAF---CTNNQV-YRRNIL--------SANLSKIPYE-----------------DSTQQIMHDASAGIFD 449 (1080)
T ss_pred cCCCcEEEeeccc---ccccce-eecccc--------hhhhhcCccc-----------------cCchhhhhhccCCccc
Confidence 8888887765211 000000 001110 000000 000 0000111111000000
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
+. ...+-+-.-.|.+++.+|+|++||+|..-|+++||++...+.+
T Consensus 450 ka------~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~----------------------------- 494 (1080)
T KOG1408|consen 450 KA------LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT----------------------------- 494 (1080)
T ss_pred cc------chhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh-----------------------------
Confidence 01 1123356778999999999999999999999999999864432
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC----CcEEEEEeCCCcEEEEECCCCc-EEEE
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR----SHLLLSSSMDKTVRLWDMETKS-CLKL 590 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~----~~~L~Sgs~DgtV~IWDl~t~~-~i~~ 590 (969)
+.+..|..+|.|+.|+. .++|++++.|.-|.|+|+...- ++.+
T Consensus 495 --------------------------------~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qt 542 (1080)
T KOG1408|consen 495 --------------------------------CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQT 542 (1080)
T ss_pred --------------------------------hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhh
Confidence 24567999999999985 5799999999999999997654 4445
Q ss_pred e-ecCCCeEEEEEecCCC--CEEEEEECCCeEEEEeCCC---ceEEEE---ecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 002086 591 F-AHNDYVTCIQFNPMDD--DYFISGSLDAKVRIWSISD---RLVVDW---TDLHEMVTAACYTPDGQNALIGSHKGSCR 661 (969)
Q Consensus 591 ~-~h~~~V~sv~fsp~~~--~~L~sgs~Dg~I~IWDl~~---~~~~~~---~~~~~~V~sv~fspdg~~Lasgs~dg~I~ 661 (969)
+ +|...|++|.|.- ++ ..+++++.|..|.+--.+. +.+... .-.+..++.++..|..+++++++.|..|+
T Consensus 543 ld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred hcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 5 8999999999987 44 5789999998776443331 222211 11235689999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg 741 (969)
|||+.+++....+.- ...|.+....+...|.+ .++++.+.|.++.++|.....+....+.|...|+.+.|.+|-
T Consensus 622 if~i~sgKq~k~FKg-----s~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKG-----SRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred EEeccccceeeeecc-----cccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence 999999987665422 25677889999999998 899999999999999987777777777888899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 002086 742 KYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+.|++.+.||.|+||.+...
T Consensus 696 kHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hhheeecCCceEEEEECchh
Confidence 99999999999999999753
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.2e-21 Score=199.06 Aligned_cols=300 Identities=20% Similarity=0.298 Sum_probs=193.6
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEE--eecCCcc--CcccccccCCCCCccC---CCCCC
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMS--MSEGNLT--PIHPSLCNSSDKASSL---DGSSP 515 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~--~~~~~~~--~v~~~~~~~~~~~~~~---~g~~~ 515 (969)
.+..|++|.+.|++|+|+.||++|||++.|++|+||++.+.+... .+..... ....+.+.+....... .|...
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 356799999999999999999999999999999999998643211 0100000 0011111111111000 00000
Q ss_pred -CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-
Q 002086 516 -NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA- 592 (969)
Q Consensus 516 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~- 592 (969)
.....+.+.+.... .++. ...+..-..|.-.|..+-... +.+|++++.|.+|.||++. |+.+..+.
T Consensus 158 ~vyk~~K~~dG~~~~-~~v~---------~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSH-HFVH---------IDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred EEEEeeecccCCCCc-cccc---------ccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 00000011111000 0000 000111234666777777665 7899999999999999999 88887773
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeC---CCc------eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI---SDR------LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl---~~~------~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
....-+..+.+| +|.++++++.---|++|.+ +.| ++..+.+|...|..++|+++...+++.+.||+++||
T Consensus 227 nq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 227 NQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 444566778999 9999999999999999987 223 356788999999999999999999999999999999
Q ss_pred EcCCCceeeeeeeeec---ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-EeecCCCCeEEEEEeC
Q 002086 664 SIEDSKLHQLNQVDFQ---TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-RGFRNTSSQISAAFNA 739 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~---~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~~~~~~~~V~sl~fsp 739 (969)
|+.-.....+....+. .........-..+..+|.+ .+++.+....|.+|........- ....|...|.+++|++
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC--cEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 9864321111000000 1112233444589999987 45555666788888755422111 1124677899999999
Q ss_pred CCCEEEEEeCCCcEEEEE
Q 002086 740 DGKYIISASEDSQVYVWK 757 (969)
Q Consensus 740 dg~~LaSgs~Dg~I~IWd 757 (969)
+|+|++|++ |..++++.
T Consensus 384 ~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 384 DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCcEEeeec-ceeeeeec
Confidence 999999998 77888876
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=2.1e-20 Score=211.56 Aligned_cols=245 Identities=20% Similarity=0.338 Sum_probs=203.7
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
..+++.++|.||...|..+++.+ +..++++|.||++++|+-...+.+.
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~------------------------------- 49 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLE------------------------------- 49 (745)
T ss_pred CcceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCccccc-------------------------------
Confidence 34678899999999999999875 4589999999999999976544332
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEE-EEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLD-LSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~-l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
...+.+|.+.|.. ++|.+ +..|++|+.|++|.+|...+..++.++ +|.
T Consensus 50 ----------------------------~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~ 101 (745)
T KOG0301|consen 50 ----------------------------THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK 101 (745)
T ss_pred ----------------------------ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc
Confidence 1245667777776 88875 567999999999999999999998877 999
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
..|.|+.... ++. +++|+.|.++++|-..... ..+.+|...|.++.+-|++ .+++|+.|.+|++|.-. +...
T Consensus 102 snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~-~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~--~~l~-- 173 (745)
T KOG0301|consen 102 SNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELV-YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG--TLLK-- 173 (745)
T ss_pred cceeeeecCC-cCc-eEecccccceEEecchhhh-cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC--chhh--
Confidence 9999999875 444 9999999999999875432 2378899999999999987 89999999999999863 3222
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
...+|..-|.++++-+++ .+++++.||.|++|+. .....++.+.|...+.+++...++..++++++|++++
T Consensus 174 ------tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 174 ------TFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred ------hhccchhheeeeEEecCC--CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 237899999999999975 7999999999999997 4455566677888899999888889999999999999
Q ss_pred EEEcCC
Q 002086 755 VWKREE 760 (969)
Q Consensus 755 IWdl~t 760 (969)
||+...
T Consensus 245 iW~~~e 250 (745)
T KOG0301|consen 245 IWKKDE 250 (745)
T ss_pred EeecCc
Confidence 999873
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=1.2e-20 Score=213.55 Aligned_cols=202 Identities=21% Similarity=0.346 Sum_probs=173.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
++.+.....+.+|+||+..|+|+....++. |+|||.|.+++||-....
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l------------------------------- 132 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL------------------------------- 132 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh-------------------------------
Confidence 335566677888999999999999988887 999999999999976521
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ec
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AH 593 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h 593 (969)
...+.+|+..|+++.+-|.+.++|||.|++|++|.- ++++++| +|
T Consensus 133 --------------------------------~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gH 178 (745)
T KOG0301|consen 133 --------------------------------VYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGH 178 (745)
T ss_pred --------------------------------hcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccc
Confidence 114778999999999999779999999999999987 6778877 89
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
++.|..+++.+ +..|++|+.||.|++|++....+....+|..-|+++....++..++++++|++++||+.. .+.+.
T Consensus 179 tD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~ 254 (745)
T KOG0301|consen 179 TDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQV 254 (745)
T ss_pred hhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEE
Confidence 99999999986 778999999999999999888888999999999999988888999999999999999987 33333
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
. ......|.++.+-+.| -+++|+.||.||||..
T Consensus 255 I--------~lPttsiWsa~~L~Ng--DIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 255 I--------TLPTTSIWSAKVLLNG--DIVVGGSDGRVRVFTV 287 (745)
T ss_pred E--------ecCccceEEEEEeeCC--CEEEeccCceEEEEEe
Confidence 2 2234478888888876 7999999999999973
No 107
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8.5e-20 Score=190.38 Aligned_cols=253 Identities=18% Similarity=0.272 Sum_probs=201.7
Q ss_pred ccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCc
Q 002086 429 RQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKAS 508 (969)
Q Consensus 429 ~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~ 508 (969)
|...-.+++.....+...++ |..+|++++|.+ ...+++|+.||.|+++|+.++...
T Consensus 33 WDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~---------------------- 88 (323)
T KOG1036|consen 33 WDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED---------------------- 88 (323)
T ss_pred ccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce----------------------
Confidence 44444455666555555555 999999999986 457999999999999999876432
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC 587 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~ 587 (969)
.+..|...|.||.+++ .+.+++|+.|++|++||.+...+
T Consensus 89 ----------------------------------------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~ 128 (323)
T KOG1036|consen 89 ----------------------------------------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV 128 (323)
T ss_pred ----------------------------------------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc
Confidence 3456999999999998 79999999999999999998777
Q ss_pred EEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE---EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002086 588 LKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD---WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 588 i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~---~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD 664 (969)
...+.....|.|+.. .++.|++|+.|..|.+||+++..... .......+.|+++.|++.-+++++-||.|.+=.
T Consensus 129 ~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 129 VGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred ccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 777777779999998 57899999999999999999865432 333456799999999999999999999999877
Q ss_pred cCCCceeeeeeeeecccc-----cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 665 IEDSKLHQLNQVDFQTKK-----KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 665 l~~~~~~~~~~~~~~~~~-----~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
+......+...+.+..+. .....+|.+|+|+|-. ..|++|+.||.|.+||..+.......+.....|.+++|+.
T Consensus 206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred cCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 766533222222222211 2223579999999986 7899999999999999887777666677778899999999
Q ss_pred CCCEEEEEeC
Q 002086 740 DGKYIISASE 749 (969)
Q Consensus 740 dg~~LaSgs~ 749 (969)
||..||+++.
T Consensus 285 dG~~LAia~s 294 (323)
T KOG1036|consen 285 DGSLLAIASS 294 (323)
T ss_pred CCCeEEEEec
Confidence 9999999985
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=3.4e-20 Score=220.19 Aligned_cols=260 Identities=20% Similarity=0.296 Sum_probs=204.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEe--CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAG--EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs--~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
.|+..|++++.+|||..+|||| .|+.++||+.+.- +....
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~v--l~~~~------------------------------------ 52 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPV--LDEKE------------------------------------ 52 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccc--cchhh------------------------------------
Confidence 3556799999999999999999 8999999997621 00000
Q ss_pred CCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC----------C--------c
Q 002086 527 HSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET----------K--------S 586 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t----------~--------~ 586 (969)
.+.. -.+.++....|.+.|.|+.|++ +.+||+|+.|+.|.||.... | +
T Consensus 53 ------------~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk 120 (942)
T KOG0973|consen 53 ------------EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK 120 (942)
T ss_pred ------------hhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceee
Confidence 0000 2456678889999999999999 89999999999999999872 0 1
Q ss_pred EEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002086 587 CLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 587 ~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD 664 (969)
+..++ +|...|..++|+| ++.+|++++.|++|.||+..+.+.+ .+.+|...|-.+.|.|-|+||++-+.|++|+||.
T Consensus 121 ~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 121 VVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred EEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEE
Confidence 23333 8999999999999 9999999999999999999987655 4567889999999999999999999999999999
Q ss_pred cCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe----CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC-
Q 002086 665 IEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS----ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA- 739 (969)
Q Consensus 665 l~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs----~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp- 739 (969)
+.+..+.....-+ .........+..+.|+||| .+|++.. .-.++.|.+-.+........+|..++.++.|+|
T Consensus 200 t~dw~i~k~It~p--f~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 200 TSDWGIEKSITKP--FEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred cccceeeEeeccc--hhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 8776554332221 1223445567889999999 7777762 334688888666666666777888999999998
Q ss_pred ----CCC------------EEEEEeCCCcEEEEEcCCCC
Q 002086 740 ----DGK------------YIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 740 ----dg~------------~LaSgs~Dg~I~IWdl~t~~ 762 (969)
..+ .+|+|+.|++|-||....++
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 112 57899999999999997643
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5e-20 Score=200.90 Aligned_cols=220 Identities=20% Similarity=0.291 Sum_probs=179.2
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|++.++.++..+.+|-..|+||.|+-||.+|+|||.||.|.+|++.+- +...
T Consensus 107 lWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l--v~a~------------------------- 159 (476)
T KOG0646|consen 107 LWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL--VSAD------------------------- 159 (476)
T ss_pred EEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee--cccc-------------------------
Confidence 5689999999999999999999999999999999999999999997631 0000
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
-....+|++.|.+|+-+|+++.... +.+|+|+|.|.++++||+..+..+..+
T Consensus 160 -------------------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 160 -------------------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred -------------------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 0013567889999999999999876 579999999999999999999999999
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-----------------eEEEEecCCC--CEEEEEEccCCCEEE
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-----------------LVVDWTDLHE--MVTAACYTPDGQNAL 652 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-----------------~~~~~~~~~~--~V~sv~fspdg~~La 652 (969)
.....+.+++.+| .+..+++|+.+|.|.+.++..- +...+.+|.+ .|+|++++-||..|+
T Consensus 215 ~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 215 TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 9999999999999 8999999999999999887431 2334667776 899999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 653 IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 653 sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
+|+.||.++|||+.+.+++... ....++|+.+.+.|--+..++.-...-.+-.|+
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl--------~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~ 348 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTL--------QTSKGPVTNLQINPLERGIILFEHKQPSLPNPH 348 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHH--------hhhccccceeEeeccccceecccccCccCCchH
Confidence 9999999999999988765442 225688999998775433333333333344444
No 110
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=1.6e-19 Score=184.53 Aligned_cols=215 Identities=19% Similarity=0.261 Sum_probs=183.6
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
.++||..+++.|.|+. +++|.+++.|.++.||--.+|+.+-++ +|.+.|+|++.+. +..++++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 5789999999999998 999999999999999999999999988 9999999999998 889999999999999999999
Q ss_pred ceEEEEecCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 627 RLVVDWTDLHEMVTAACYTPDGQNALIGSH-----KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 627 ~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-----dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
|+++.......+|..+.|+++|++++..+. .+.|.++|++.........- ...+...+...++.+.|.|-+ ..
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e-p~~kI~t~~skit~a~Wg~l~-~~ 161 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE-PYLKIPTPDSKITSALWGPLG-ET 161 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC-ceEEecCCccceeeeeecccC-CE
Confidence 999999999999999999999998887764 46899999985442111110 111224566899999999988 89
Q ss_pred EEEEeCCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCC
Q 002086 702 VLVTSADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST 766 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t 766 (969)
|++|..||.|.+||..+...... ...|...|+.+.|++|..+++|++.|.+-++||+.+-+.+.+
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 99999999999999887544333 355677899999999999999999999999999998655444
No 111
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=2.7e-20 Score=202.91 Aligned_cols=224 Identities=19% Similarity=0.348 Sum_probs=180.4
Q ss_pred ceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
...-..|.||++.=++|+|++... +|++|+.|++|++||+.......
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-------------------------------- 214 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED-------------------------------- 214 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC--------------------------------
Confidence 344457999999999999999544 89999999999999987422100
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCC--CcEEEEe-ecC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMET--KSCLKLF-AHN 594 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t--~~~i~~~-~h~ 594 (969)
....+...+.+|...|.+++|++ ..+|++++.|+.+.|||+++ .++.... +|.
T Consensus 215 ----------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 215 ----------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS 272 (422)
T ss_pred ----------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence 01123457899999999999998 78999999999999999995 3333333 899
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCcee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+.|.|++|+|.++..|++|+.|++|++||+++. .+..+..|...|.+|.|+|+. ..|++++.|+.+.|||+..-...
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999999999988899999999999999999874 466788899999999999975 46778889999999999753222
Q ss_pred ee------eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 672 QL------NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 672 ~~------~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
+. ....+.....+|...|..+.|+|..+..|++.+.|+.+.||+...
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 11 111122334789999999999999999999999999999999653
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.5e-21 Score=219.19 Aligned_cols=244 Identities=18% Similarity=0.310 Sum_probs=200.7
Q ss_pred CEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 453 SIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 453 ~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
.+..++|.. +.++|||++..|.|.+||+...
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------------ 120 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------------ 120 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------------
Confidence 345667765 5679999999999999998741
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCC
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~ 608 (969)
...+.+..|..|...|.++.|++ ..+|++||.||+|++||++..+...++ +....|..|.|+|..++
T Consensus 121 ----------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 121 ----------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred ----------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc
Confidence 11233346788999999999998 789999999999999999998877766 77889999999998899
Q ss_pred EEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 609 YFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
+|+++...|.+++||++... .+++..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+......+ ...
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-------nTi 263 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-------NTI 263 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-------eec
Confidence 99999999999999998754 456788999999999999999999999999999999998765444332 346
Q ss_pred CCeEEEEEcCCCCceEEEEe--CCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC
Q 002086 687 RKITGFQFSPSNPSEVLVTS--ADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs--~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+|.++.|-|....+|++++ .|-.|+|||++... .......|...++.++|.. |...|.+++.||+|..-.+++.
T Consensus 264 apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 264 APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 78999999999988888875 47789999987644 3334455677788888865 5678999999999988777653
No 113
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.6e-19 Score=208.49 Aligned_cols=252 Identities=19% Similarity=0.286 Sum_probs=203.6
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.+|++.-+.|+|.|+|++|+||+.||.|++|+....+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 47999999999999999999999999999999753210
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCC
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMD 606 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~ 606 (969)
.|- .+.-+...|.+++.. ..+|++|+.+++|.+|.+.+++.-..+ ..+-++.+++|+. +
T Consensus 48 -----------------~P~-ti~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~ 107 (933)
T KOG1274|consen 48 -----------------EPE-TIDISGELVSSIACY-SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-S 107 (933)
T ss_pred -----------------CCc-hhhccCceeEEEeec-ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-C
Confidence 000 111266777777765 369999999999999999998877555 6788999999998 8
Q ss_pred CCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 607 DDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
+.+++.|+.|-.|++.++.+. ....+.+|..+|.++.|+|++++||+.+.||.|+|||+.++.+...............
T Consensus 108 g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~ 187 (933)
T KOG1274|consen 108 GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL 187 (933)
T ss_pred CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc
Confidence 999999999999999999775 5667788999999999999999999999999999999998876543322111111122
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE--eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR--GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...+..++|+|++ ..+++.+.|+.|.+|+.......+. ...+...+..+.|+|+|+|||+++.||.|.|||+++.+
T Consensus 188 s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 188 SRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred cceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 5567889999998 6788889999999999776554443 33444558899999999999999999999999999743
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=199.69 Aligned_cols=247 Identities=17% Similarity=0.281 Sum_probs=186.5
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|++....+..+|++|.|.|.+|++.. ..++|+|.|++|+.|.++. ..+.++.+..... .+........+...|
T Consensus 93 iWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~-gIdh~~~~~~FaTcG-- 166 (433)
T KOG0268|consen 93 IWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYL-GIDHHRKNSVFATCG-- 166 (433)
T ss_pred EEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecccccc-ccccccccccccccC--
Confidence 446666677788999999999999987 6799999999999999764 2222222110000 000000000000000
Q ss_pred CCCCcccccCCCCCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
-...+|+. ...|++.+.--.+.|.++.|+| ...|++|+.|+.|.|||++++.+++..
T Consensus 167 --------------------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV 226 (433)
T KOG0268|consen 167 --------------------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV 226 (433)
T ss_pred --------------------ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee
Confidence 01123433 4568888888889999999999 578888889999999999999999888
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
-..-.-+.|+|+| +...|++|+.|..++.||++.- .+....+|...|..+.|+|.|+.|++|+.|.+|+||....+.
T Consensus 227 i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 227 ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 7777778999999 8999999999999999999864 344567788999999999999999999999999999998776
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
...... ...-..|.|+.|+-|. +++++|+.|+.|++|..
T Consensus 306 SRdiYh-------tkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 306 SRDIYH-------TKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKA 344 (433)
T ss_pred chhhhh-------HhhhheeeEEEEeccc-cEEEecCCCcceeeeec
Confidence 432211 1223468999999988 89999999999999983
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=9.2e-20 Score=189.21 Aligned_cols=238 Identities=15% Similarity=0.243 Sum_probs=191.9
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+....|.++|.+++|+.||..+++|+.|+.+++||+.+++..
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-------------------------------------- 107 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-------------------------------------- 107 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee--------------------------------------
Confidence 446679999999999999999999999999999999987653
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~ 601 (969)
.+..|.++|.++.|-+ -.+|+|||.|++|+.||.+....+.++.-.+.|+++.
T Consensus 108 ------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D 163 (347)
T KOG0647|consen 108 ------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD 163 (347)
T ss_pred ------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehh
Confidence 3456999999999987 3589999999999999999999999999999999998
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEE---EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVV---DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~---~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
.- ..+++++..+..|.+|+++++... ......-.+.||+..++.+..+.|+-+|.+.|..+........+.+..
T Consensus 164 v~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 164 VL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred cc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 84 578889999999999999776432 122244668999999999999999999999999998864422222211
Q ss_pred ccc---ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 679 QTK---KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 679 ~~~---~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
... .......|.+|+|+|.. ..|++++.||++.+||............+..+|++++|+.+|.++|-+.
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 111 01123467889999976 7999999999999999655444445567888999999999999887653
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=1.1e-18 Score=192.17 Aligned_cols=260 Identities=16% Similarity=0.201 Sum_probs=186.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++.+.+.++.+.+|.. +.+++|+|++++| ++++.|+.|++||+.+++.+..+
T Consensus 17 d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------------------------- 69 (300)
T TIGR03866 17 DTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-------------------------- 69 (300)
T ss_pred ECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--------------------------
Confidence 5555666777776654 6789999999976 67778999999999877654321
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEeec
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLFAH 593 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~~h 593 (969)
..+. .+..+.|++ ++.++ +++.|+.|++||+.+++.+..+.+
T Consensus 70 -----------------------------------~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 70 -----------------------------------PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred -----------------------------------cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 1111 234678888 56554 456789999999999888888876
Q ss_pred CCCeEEEEEecCCCCEEEEEECCC-eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDA-KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLH 671 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg-~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~ 671 (969)
...+.+++|+| ++.+++++..++ .+.+||..+++..........+..++|+|++++|++++ .++.|++||+.+++..
T Consensus 114 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 114 GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 66788999999 899999888775 46788998887765544455678899999999886554 6899999999988754
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE-eCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA-SED 750 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg-s~D 750 (969)
.......... .........++|+|++...+++...++.|.+||..+...... ......+.+++|+|+|++|+++ +.+
T Consensus 193 ~~~~~~~~~~-~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 193 KKITFEIPGV-HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY-LLVGQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred eeeeeccccc-ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE-EEeCCCcceEEECCCCCEEEEEcCCC
Confidence 4322111000 011223456889999854445556677899999765433222 2233468899999999999886 468
Q ss_pred CcEEEEEcCCCC
Q 002086 751 SQVYVWKREEHR 762 (969)
Q Consensus 751 g~I~IWdl~t~~ 762 (969)
|.|++||+.+.+
T Consensus 271 ~~i~v~d~~~~~ 282 (300)
T TIGR03866 271 NDVSVIDVAALK 282 (300)
T ss_pred CeEEEEECCCCc
Confidence 999999999843
No 117
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.1e-19 Score=185.57 Aligned_cols=276 Identities=20% Similarity=0.228 Sum_probs=214.9
Q ss_pred eeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEEC--CCeEEEE
Q 002086 547 FCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSL--DAKVRIW 622 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~--Dg~I~IW 622 (969)
.+.+..-.+.|.++.|++ |.+|++++.|.+|+|||..+++.++++ .+...|..++|.. ..+.++.++. |.+|+..
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEE
Confidence 345556778999999998 899999999999999999999999988 4567888899987 5666666666 8899999
Q ss_pred eCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 623 SISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 623 Dl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
++.+.+.+. +.+|...|..++.+|-++.+++++.|++|++||++..+++... +...-..++|.|.| -+
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l----------~~~~~pi~AfDp~G-Li 154 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL----------NLSGRPIAAFDPEG-LI 154 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE----------ecCCCcceeECCCC-cE
Confidence 999887665 5568899999999999999999999999999999977654332 22334567899998 67
Q ss_pred EEEEeCCCcEEEEeCCcc----eEEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEeccc
Q 002086 702 VLVTSADSRIRILDGLDI----VHKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRN 776 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~----~~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~ 776 (969)
++++.....|++||.+.. ...+... ......+.+.|||||++|+.++..+.+++.|.-++....+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t---------- 224 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST---------- 224 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee----------
Confidence 777777779999997642 3333332 3456688999999999999999999999999877432111
Q ss_pred CCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCC-
Q 002086 777 HEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPP- 855 (969)
Q Consensus 777 ~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~p- 855 (969)
+......+.-+..++++|+++++.++..++.++.|...+++....+..|
T Consensus 225 ------------------------------fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~ 274 (311)
T KOG1446|consen 225 ------------------------------FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN 274 (311)
T ss_pred ------------------------------EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC
Confidence 1111112223467789999999999999999999999888777766665
Q ss_pred CCCccccccCCCCCCccccC
Q 002086 856 EEELSLISHDPGISESFTSN 875 (969)
Q Consensus 856 ee~l~~is~hP~~~~~~~~s 875 (969)
..++.++-+.|... +|+++
T Consensus 275 ~~~~~~~~fnP~~~-mf~sa 293 (311)
T KOG1446|consen 275 GGPVSCVRFNPRYA-MFVSA 293 (311)
T ss_pred CCCccccccCCcee-eeeec
Confidence 66667777888876 45543
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=203.95 Aligned_cols=293 Identities=18% Similarity=0.278 Sum_probs=206.7
Q ss_pred EEEEEeC---CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 455 WTIKFSL---DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 455 ~~l~fSp---Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
++..|++ ....|+.+.+||.|.++|......
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------------------------------- 86 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------------------------------- 86 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc----------------------------------------------
Confidence 4466765 345899999999999999864221
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEE---eecCCCeEEEEEecCCC
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKL---FAHNDYVTCIQFNPMDD 607 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~---~~h~~~V~sv~fsp~~~ 607 (969)
...+..+..+..|-..|.++.|.| ...|++++.|.++++||+.+..++.. ++|.+.|.+++|.|.+.
T Consensus 87 ---------r~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~ 157 (720)
T KOG0321|consen 87 ---------RLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP 157 (720)
T ss_pred ---------chhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCC
Confidence 112223345677999999999999 67899999999999999999998865 49999999999999888
Q ss_pred CEEEEEECCCeEEEEeCCCceE----------------------------EEEecCCCCEEE---EEEccCCCEEEEEeC
Q 002086 608 DYFISGSLDAKVRIWSISDRLV----------------------------VDWTDLHEMVTA---ACYTPDGQNALIGSH 656 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~----------------------------~~~~~~~~~V~s---v~fspdg~~Lasgs~ 656 (969)
..|++|+.||.|.|||++-..+ .....+...|.. +.+..|...||+++.
T Consensus 158 ~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga 237 (720)
T KOG0321|consen 158 AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA 237 (720)
T ss_pred cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC
Confidence 9999999999999999864321 012222333444 556667888998776
Q ss_pred -CCcEEEEEcCCCceeeeeeeeecccccC---CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc----eEEEEeecC
Q 002086 657 -KGSCRLYSIEDSKLHQLNQVDFQTKKKS---STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI----VHKFRGFRN 728 (969)
Q Consensus 657 -dg~I~IwDl~~~~~~~~~~~~~~~~~~~---h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~----~~~~~~~~~ 728 (969)
|+.|+|||++.........-.-...... ....++++.....| .+|++.+.|+.|++|++... ...+.++..
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~ 316 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN 316 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCccc
Confidence 9999999999876432211111111111 24567888888877 57777777999999996542 333333333
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcc
Q 002086 729 TSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKK 808 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~ 808 (969)
...-..-..+||+.+|++|+.|...++|.+.+.+. ....+..+.-+++|+.|.-...-+.+.+.++..+.+|...
T Consensus 317 ~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-----~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 317 SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-----PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ceeeeeeecCCCCceEeccCCCcceeeeeecCccC-----ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 33333456799999999999999999999998643 3344555555666666655443344445577777777553
No 119
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.2e-20 Score=190.06 Aligned_cols=286 Identities=15% Similarity=0.166 Sum_probs=209.3
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD 634 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~ 634 (969)
..|+.|++ |.+|++|+.||.|.|||+.+...-+++ +|..+|++++|++ ++.+|++++.|..|.+||+..+.++....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999 999999999999999999998877777 8999999999999 99999999999999999999999999999
Q ss_pred CCCCEEEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 635 LHEMVTAACYTPDGQN-ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 635 ~~~~V~sv~fspdg~~-Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
...+|+.+.|+|.... +++.-.+..-.+.++...+.. ..... ........-.+..|.+.| .++++|...|.+.+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d---~d~dln~sas~~~fdr~g-~yIitGtsKGkllv 179 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKD---DDGDLNSSASHGVFDRRG-KYIITGTSKGKLLV 179 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCC---CccccccccccccccCCC-CEEEEecCcceEEE
Confidence 9999999999996543 333334444556666543221 11100 001111112233577777 89999999999999
Q ss_pred EeCCcceEEEEeecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCC
Q 002086 714 LDGLDIVHKFRGFRN-TSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWP 792 (969)
Q Consensus 714 wD~~~~~~~~~~~~~-~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~ 792 (969)
+|..+.......... ...|..+.|+..|++|+.-+.|..|+.|++..-... ++.
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~--~r~----------------------- 234 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE--GRD----------------------- 234 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc--Ccc-----------------------
Confidence 996654333322222 356888999999999999999999999998752111 110
Q ss_pred CcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc-CCCCccccCCCCCCccccCCCCCC-CCccccccCCCCCC
Q 002086 793 GMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG-HSRRLLPPLPKKTNKVERVPSPPE-EELSLISHDPGISE 870 (969)
Q Consensus 793 ~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~-~~~~~L~~~~~~s~~~~~~l~~pe-e~l~~is~hP~~~~ 870 (969)
|+... -.....--...++..++||.+|+++.++ ...+.||.|.+..|++.+.|.+++ |.++.+.|||-.+.
T Consensus 235 ----~e~e~---~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 235 ----GEVEP---EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred ----CCcCh---hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee
Confidence 00000 0000000123456778889999997765 455689999999999999999999 99999999999886
Q ss_pred ccccCCCccc
Q 002086 871 SFTSNSSSIR 880 (969)
Q Consensus 871 ~~~~s~~~~r 880 (969)
+.+-.+.+++
T Consensus 308 i~si~sg~v~ 317 (405)
T KOG1273|consen 308 IASIASGVVY 317 (405)
T ss_pred eeeccCCceE
Confidence 6655444333
No 120
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=192.07 Aligned_cols=261 Identities=22% Similarity=0.296 Sum_probs=204.5
Q ss_pred EecccccCEEEEEEeCCC--CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 446 EIQAHEGSIWTIKFSLDA--RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg--~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..-+|.+.|+.+..++-+ .+.|+=+..|.|.||++... +..+.....
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~----------------------------- 194 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEPGL----------------------------- 194 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcCccc-----------------------------
Confidence 355799999999988855 47777788999999998631 111000000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEE----EeecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLK----LFAHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~----~~~h~~~V 597 (969)
.+-....+|+.++.+|...=++|+|+| ...|++|..-+.|++|...++.-.. ..+|+..|
T Consensus 195 --------------~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SV 260 (440)
T KOG0302|consen 195 --------------EVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSV 260 (440)
T ss_pred --------------cccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccch
Confidence 000124567889999999999999999 6789999999999999999876432 33799999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCc---eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDR---LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
-.++|+|.....|++|+.||+|+|||++.+ ..+....|...|+.|.|+..-.+|++|+.||+++|||++..+..+
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~-- 338 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ-- 338 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC--
Confidence 999999988899999999999999999988 566778899999999999998899999999999999999876531
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------------------ceEEEEeecCCCCeEEEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD------------------IVHKFRGFRNTSSQISAA 736 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------------------~~~~~~~~~~~~~V~sl~ 736 (969)
.....+.|..+|++|.|+|.....|++++.|.+|.|||+.- ..+.+..|.....+..+.
T Consensus 339 ---pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Kevh 415 (440)
T KOG0302|consen 339 ---PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVH 415 (440)
T ss_pred ---cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhhe
Confidence 22334779999999999998889999999999999999421 012334455566677889
Q ss_pred EeCC-CCEEEEEeCCCcEEEEE
Q 002086 737 FNAD-GKYIISASEDSQVYVWK 757 (969)
Q Consensus 737 fspd-g~~LaSgs~Dg~I~IWd 757 (969)
|++. ..+|++.+.|| +.||.
T Consensus 416 WH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 416 WHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eccCCCCeEEEecccc-eeEEE
Confidence 9985 45788888887 45554
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.9e-18 Score=191.80 Aligned_cols=249 Identities=15% Similarity=0.232 Sum_probs=205.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-..+|.+|+|+.+.+.||.+-.||.|-||++..+=...
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~------------------------------------------ 61 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE------------------------------------------ 61 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee------------------------------------------
Confidence 46789999999999999999999999999987532222
Q ss_pred CCcccccceeeecCCCceeEeccC-CCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGH-LDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH-~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
..+.|+ ...|.+++|+++..|.+.+.+|.|.-||+.+++.+..+ ...+.|++++.+| .+
T Consensus 62 ------------------~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~ 122 (691)
T KOG2048|consen 62 ------------------PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN 122 (691)
T ss_pred ------------------EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence 133344 45799999999999999999999999999999998887 5678999999999 88
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEE---ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDW---TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~---~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
..++.|+.||.++.++...+.+... ....+.|.++.|+|++..++.|+.||.|++||...+.........+....+.
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence 9999999999888888888776542 2334789999999999999999999999999999988766444434333344
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
...-|.++.|-.++ .|++|...|+|.+||.......-....|...|.+++..+++.++++++.|+.|..|...+.
T Consensus 203 ~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 203 EPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 55667888888765 8999999999999996654433333446677999999999999999999999999998874
No 122
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=5.6e-20 Score=206.71 Aligned_cols=249 Identities=19% Similarity=0.302 Sum_probs=206.6
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
....++.|.+.|..+....+|+.|+++|.|-+|++|+...+..
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------------------------------------- 107 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------------------------------------- 107 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-------------------------------------
Confidence 4677999999999999999999999999999999999874320
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEe-cC-CcEEEEEeCCCcEEEEECCCCc--EEEEe-------
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSW-SR-SHLLLSSSMDKTVRLWDMETKS--CLKLF------- 591 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~f-s~-~~~L~Sgs~DgtV~IWDl~t~~--~i~~~------- 591 (969)
-.+.++..|.+-|.|+++ -+ ..++++|+.|+.|.|||+.++. .+..+
T Consensus 108 ----------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 108 ----------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred ----------------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 011256779999999999 45 7899999999999999999873 22222
Q ss_pred ---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 592 ---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 592 ---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
++...|++++.++ .+..|++|+..+.|++||.+++ +++.+.+|...|.++..++||..+++++.||+|++||+..
T Consensus 166 l~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 6888999999999 8889999999999999999986 4667889999999999999999999999999999999998
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
.+++... ..|...|.++..+|+- ..+++|+.|+.|+.-|+++............+|..+..+...+-+-++
T Consensus 245 QrCl~T~--------~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~Wvt 315 (735)
T KOG0308|consen 245 QRCLATY--------IVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVT 315 (735)
T ss_pred cceeeeE--------EeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceee
Confidence 8876654 4577889999999977 799999999999999987754333334445566667666544555777
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.|+.|+-|...-
T Consensus 316 Ttds~I~rW~~~~ 328 (735)
T KOG0308|consen 316 TTDSSIKRWKLEP 328 (735)
T ss_pred eccccceecCCcc
Confidence 8899999998764
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=3.3e-19 Score=184.02 Aligned_cols=289 Identities=18% Similarity=0.220 Sum_probs=217.7
Q ss_pred eccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc------------EEEE----eecCCCeEEEEEecCCCCEEE
Q 002086 550 FIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS------------CLKL----FAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 550 l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~------------~i~~----~~h~~~V~sv~fsp~~~~~L~ 611 (969)
...|.+.|.++...+ +.++++|+.||.|.+||++... |+.. -+|...|.++.|-|.+...|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 456899999999987 8999999999999999997532 1111 158889999999999999999
Q ss_pred EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPD---GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspd---g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
+++.|.++++||..+-+....+...+.|++-+++|- .-++|+|..+-.|++.|+..+..... ..+|...
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--------LsGHr~~ 190 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--------LSGHRDG 190 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--------eccccCc
Confidence 999999999999999999988899999999999984 34788899999999999999986544 3789999
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEE------------eecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFR------------GFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~------------~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
|.++.|+|.....|++|+.||.|++||++.. ...+. ...|.+.+..++|+.||.++++++.|..+
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 9999999999888999999999999996643 22221 23456778999999999999999999999
Q ss_pred EEEEcCCCCccCCCc-eeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc
Q 002086 754 YVWKREEHRNASTGK-RAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG 832 (969)
Q Consensus 754 ~IWdl~t~~~~~t~k-~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~ 832 (969)
++|+..+++...... ++......+..+. +......+ ....
T Consensus 271 r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-------------~~~~~s~v--------------------------fv~~ 311 (397)
T KOG4283|consen 271 RVWNMESGRNTLREFGPIIHNQTTSFAVH-------------IQSMDSDV--------------------------FVLF 311 (397)
T ss_pred EEeecccCcccccccccccccccccceEE-------------Eeecccce--------------------------EEEE
Confidence 999999865422111 1111111111110 00000111 1122
Q ss_pred CCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccCCCccccCCCC
Q 002086 833 HSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSNSSSIRSGDSP 885 (969)
Q Consensus 833 ~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s~~~~r~~~~~ 885 (969)
..+..++.+...++...+.+..|-+.+.+....|.|.+-|+.+=...-+-++|
T Consensus 312 p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 312 PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 23355667777777778888888888888889999999998853333344444
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.9e-19 Score=193.24 Aligned_cols=203 Identities=22% Similarity=0.358 Sum_probs=170.5
Q ss_pred CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC----
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD---- 626 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~---- 626 (969)
-.++|.+++-+| +.+|+.|+..|.|++|.+.+|..+.++ +|-..|+|+.|+- ++.+|++|+.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence 346799999999 777777779999999999999999887 8999999999998 999999999999999998732
Q ss_pred ------ceEEEEecCCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 627 ------RLVVDWTDLHEMVTAACYTPDG--QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 627 ------~~~~~~~~~~~~V~sv~fspdg--~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
.....+..|.-+|+.+...+.| .+|++++.|.+|++||+..+.++.... ....+.+++.+|.+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~---------fp~si~av~lDpae 229 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT---------FPSSIKAVALDPAE 229 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe---------cCCcceeEEEcccc
Confidence 2244566788889998887753 589999999999999999998765533 35679999999987
Q ss_pred CceEEEEeCCCcEEEEeCCc------------------ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 699 PSEVLVTSADSRIRILDGLD------------------IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 699 ~~~l~sgs~Dg~I~IwD~~~------------------~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+++|+.+|.|.+.+..+ ....+.++.+...|+|++++-||.+|++|+.||.|+|||+.+
T Consensus 230 -~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 230 -RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred -cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 8999999999999987332 123445555556899999999999999999999999999998
Q ss_pred CCccCC
Q 002086 761 HRNAST 766 (969)
Q Consensus 761 ~~~~~t 766 (969)
.+++.+
T Consensus 309 ~Q~iRt 314 (476)
T KOG0646|consen 309 KQCIRT 314 (476)
T ss_pred HHHHHH
Confidence 766544
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=9e-21 Score=215.11 Aligned_cols=236 Identities=25% Similarity=0.454 Sum_probs=204.0
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+++-+|...|.|+..-..++.+++|+.|..+-||.+..-.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------------------- 61 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------------------- 61 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----------------------------------------
Confidence 3467899999999997788999999999999999875211
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
.+..|.+|..+|.+|.|+. ..+|++|+.+|+|++||++..+.++++ +|...+.+|.|
T Consensus 62 ---------------------~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 62 ---------------------AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred ---------------------hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee
Confidence 1124789999999999998 788999999999999999999887766 99999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCC-CceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSIS-DRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~-~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+| -+.+++.|+.|+.+++||++ .|....+..|...+.++.|+|+|++++.|+.|.+++|||+..+++...+
T Consensus 121 ~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef------- 192 (825)
T KOG0267|consen 121 HP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF------- 192 (825)
T ss_pred cc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc-------
Confidence 99 89999999999999999999 4555566667788999999999999999999999999999988865443
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
..|...+..+.|+|.. .+++.|+.|++|++||+.+....-.+......|.+..|+|++..+++|..+.
T Consensus 193 -~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 193 -KSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -ccccccccccccCchh-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 6789999999999987 7888999999999999887666555555677899999999999999887654
No 126
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.2e-19 Score=199.56 Aligned_cols=205 Identities=20% Similarity=0.344 Sum_probs=176.1
Q ss_pred eeeEecc-cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQA-HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~g-H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
.+.++.+ |...|-+++|. +..|.+|+.|+.|..+|+...+...
T Consensus 251 ~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~---------------------------------- 294 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV---------------------------------- 294 (484)
T ss_pred ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh----------------------------------
Confidence 3444555 99999999998 6789999999999999987543221
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
..+.+|...|..+.|++ +.+|++|+.|+.|.|||....+.+..+ .|...|.+
T Consensus 295 --------------------------~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 295 --------------------------STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred --------------------------hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence 02678999999999999 899999999999999999766666555 99999999
Q ss_pred EEEecCCCCEEEEE--ECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE--EeCCCcEEEEEcCCCceeeeee
Q 002086 600 IQFNPMDDDYFISG--SLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI--GSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 600 v~fsp~~~~~L~sg--s~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las--gs~dg~I~IwDl~~~~~~~~~~ 675 (969)
++|+|....+||+| +.|+.|++||..++..+........|..+.|++..+.|++ |..++.|.||+..+.+...
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~--- 425 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA--- 425 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee---
Confidence 99999888999986 5699999999999999999999999999999999877765 6678899999998855433
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
...+|...|..++++|++ ..+++|+.|.++++|+...
T Consensus 426 -----~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 426 -----ELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -----eecCCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence 237899999999999998 8999999999999999665
No 127
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=1.3e-18 Score=196.95 Aligned_cols=285 Identities=21% Similarity=0.326 Sum_probs=206.5
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEE-------EeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVM-------SMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l-------~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
+.||++.|+++.|+|++..|++++.|+++.||.-.+..-+ ....+.........+.+........+....+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~-- 340 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF-- 340 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE--
Confidence 4599999999999999999999999999999987654111 1111111112222222222111111111111
Q ss_pred ccccCCCCCCCCcccccceeeecCC----CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-CcEEEEe--
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSE----KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-KSCLKLF-- 591 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~----k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-- 591 (969)
..|.... .+...+.||.+.|++++|.| +.+|++.+.|.+-||+-.-. ......+
T Consensus 341 ------------------hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 341 ------------------HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred ------------------EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc
Confidence 1111111 22335689999999999999 99999999999999987652 2223333
Q ss_pred --ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-------------------------------------------
Q 002086 592 --AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD------------------------------------------- 626 (969)
Q Consensus 592 --~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~------------------------------------------- 626 (969)
-|...++|++|-+ ....|++|.....+|+|+...
T Consensus 403 PQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred cccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 5999999999997 578899999999999998511
Q ss_pred c----------------------------------eEEEEecCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCC
Q 002086 627 R----------------------------------LVVDWTDLHEMVTAACYTPDGQNALIGSHKG-----SCRLYSIED 667 (969)
Q Consensus 627 ~----------------------------------~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg-----~I~IwDl~~ 667 (969)
+ ++.++++|...|++++.+|+++++|+++... .|++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 0 0014567778899999999999999988644 689999987
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-EEEE---eecCCCCeEEEEEeCCCCE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV-HKFR---GFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~-~~~~---~~~~~~~V~sl~fspdg~~ 743 (969)
....+ ....|.-.|+.++|+|++ .+|++.+.|.++.+|...+.. ..+. ...|..-|.+++|+|++.+
T Consensus 562 W~~~~--------~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 562 WLQVQ--------ELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred hhhhh--------eecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 76543 237899999999999999 899999999999999854321 1111 3456667889999999999
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 002086 744 IISASEDSQVYVWKREEH 761 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t~ 761 (969)
++|++.|.+|++|.....
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 999999999999999874
No 128
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.1e-17 Score=164.72 Aligned_cols=270 Identities=14% Similarity=0.185 Sum_probs=202.0
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
+..+..|. ...+|.+++|+|.|.+.|.|+..++.+|-....-..++ .++..+..+
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r--~~hea~~~p---------------------- 77 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR--HAHEAAKQP---------------------- 77 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcc--cccccccCC----------------------
Confidence 34444454 57789999999999999999999999987643211110 011000000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE------EEEeec
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC------LKLFAH 593 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~------i~~~~h 593 (969)
.....+.-+.|.+.|+|.+|+| +++|++|+.|++|++.-+....+ +..--|
T Consensus 78 ----------------------p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmh 135 (350)
T KOG0641|consen 78 ----------------------PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMH 135 (350)
T ss_pred ----------------------CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeec
Confidence 0001123456899999999999 99999999999999987765433 233369
Q ss_pred CCCeEEEEEecC---CCCEEEEEE-CCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 594 NDYVTCIQFNPM---DDDYFISGS-LDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 594 ~~~V~sv~fsp~---~~~~L~sgs-~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
.+.|..++|... .+.+|++++ .|..|++-|...++.+. +.+|.+-|.++ ++-+|-++++|+.|.+|++||++-.
T Consensus 136 dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 136 DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc
Confidence 999999999641 234566654 47788888888887655 55666777665 5567889999999999999999987
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
..+......+... .-....|..++..|.| .+|++|-.|....+||++........+.|...|.++.|+|...||++|+
T Consensus 215 ~~v~~l~~~~~~~-glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 215 SCVNTLDNDFHDG-GLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS 292 (350)
T ss_pred ceeeeccCcccCC-CcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec
Confidence 7665433222111 1223679999999998 8999999999999999998888888889999999999999999999999
Q ss_pred CCCcEEEEEcCC
Q 002086 749 EDSQVYVWKREE 760 (969)
Q Consensus 749 ~Dg~I~IWdl~t 760 (969)
.|..|++-|+..
T Consensus 293 yd~~ikltdlqg 304 (350)
T KOG0641|consen 293 YDMKIKLTDLQG 304 (350)
T ss_pred ccceEEEeeccc
Confidence 999999999975
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.3e-18 Score=178.09 Aligned_cols=250 Identities=19% Similarity=0.314 Sum_probs=186.4
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.+|.+-|.|+.|.+-|+.+|||+.|++|+|||.....-.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~----------------------------------------- 48 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT----------------------------------------- 48 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc-----------------------------------------
Confidence 479999999999999999999999999999997532110
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCC-------c--EEE-EeecC
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETK-------S--CLK-LFAHN 594 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~-------~--~i~-~~~h~ 594 (969)
-.....++.|.+.|..|.|.+ |+.+++++.|++|.||.=... + ... .....
T Consensus 49 ----------------W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr 112 (361)
T KOG2445|consen 49 ----------------WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR 112 (361)
T ss_pred ----------------eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC
Confidence 011125778999999999964 899999999999999975311 1 112 22677
Q ss_pred CCeEEEEEecC-CCCEEEEEECCCeEEEEeCCCceEE------EEe--------cCCCCEEEEEEccC---CCEEEEEeC
Q 002086 595 DYVTCIQFNPM-DDDYFISGSLDAKVRIWSISDRLVV------DWT--------DLHEMVTAACYTPD---GQNALIGSH 656 (969)
Q Consensus 595 ~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWDl~~~~~~------~~~--------~~~~~V~sv~fspd---g~~Lasgs~ 656 (969)
..|+.|.|.|. -+-.+++++.||.||||+.-.---+ ..+ .+.....|+.|+|. ..+|++|+.
T Consensus 113 ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~ 192 (361)
T KOG2445|consen 113 SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSD 192 (361)
T ss_pred cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcc
Confidence 89999999993 2457999999999999997542111 111 24456789999974 468888887
Q ss_pred C-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC---ceEEEEeCCCcEEEEeCCc----------
Q 002086 657 K-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP---SEVLVTSADSRIRILDGLD---------- 718 (969)
Q Consensus 657 d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~---~~l~sgs~Dg~I~IwD~~~---------- 718 (969)
+ +.++||....+..... .......|..+|+.|+|.|.-+ .+|++++.|| |+||.+..
T Consensus 193 e~a~~~~~~~Iye~~e~~rKw~----kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~ 267 (361)
T KOG2445|consen 193 EDAPHLNKVKIYEYNENGRKWL----KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEV 267 (361)
T ss_pred cCCccccceEEEEecCCcceee----eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcc
Confidence 6 5788887765432111 2233368999999999999532 4688999999 99998542
Q ss_pred ---------ceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 719 ---------IVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 719 ---------~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+.+.. .-.|.+.|..+.|+-.|..|++.|.||+|++|...
T Consensus 268 ~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 268 LAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 112222 33567789999999999999999999999999875
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.82 E-value=3.7e-19 Score=194.27 Aligned_cols=238 Identities=20% Similarity=0.350 Sum_probs=200.7
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-..-|.++.+.|||+-|++||.-.+|.|||+..-.....
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik----------------------------------------- 502 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK----------------------------------------- 502 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchh-----------------------------------------
Confidence 356799999999999999999999999999874322110
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
.++..-.-..++++.+| .+..+++..||.|.|||+.+...+..| +|.+.+.||.+++ ++
T Consensus 503 ------------------aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dG 563 (705)
T KOG0639|consen 503 ------------------AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DG 563 (705)
T ss_pred ------------------hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CC
Confidence 01112223456788888 678888999999999999999999888 8999999999999 99
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
..|-+|+.|.+|+.||++.+..+........|.++.++|++.+|++|-+++.+.|......+..+. ..|..
T Consensus 564 tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql---------hlheS 634 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL---------HLHES 634 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceee---------ccccc
Confidence 999999999999999999998887777888999999999999999999999999988876654332 56788
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
-|.++.|.+.| +++++.+.|.-+..|.+--....|... ....|+++.++.|.+||+||+.|..-.||.+
T Consensus 635 cVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 635 CVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEEEecccC-ceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999998 899999999999999966555555543 4567999999999999999999988888875
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=5e-19 Score=197.20 Aligned_cols=304 Identities=17% Similarity=0.317 Sum_probs=214.9
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCC---ccCCCCCC-CC
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKA---SSLDGSSP-NP 517 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~---~~~~g~~~-~~ 517 (969)
.+...++||++.|.||...|.|.+||+|+.||+|+||.+.+|.++....... .+..+.+.+.... ....+... ..
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceEEe
Confidence 4556789999999999999999999999999999999999999998644321 2223333332221 11111110 00
Q ss_pred -CcccccCCC---------CCCCCcccccceeeecC-----CCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEE
Q 002086 518 -PPEKKKKGK---------HSSPDYVHVPETVFSLS-----EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVR 578 (969)
Q Consensus 518 -~~~~~~~~~---------~~~~~~~~~~~~v~~~~-----~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~ 578 (969)
.....+... ......-......|... .+.++....|...|..|.|+. |.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 000000000 00000000011223222 233567778999999999998 9999998654 5789
Q ss_pred EEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeC
Q 002086 579 LWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSH 656 (969)
Q Consensus 579 IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~ 656 (969)
|.++.......-| ...+.|.++.|+| ...+|++++. ..|+|||+..+.++. +......|..++++|.|..|++|+.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 9999887766666 5678899999999 6667776664 679999998876553 4455577999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-------c----ceEEEEe
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL-------D----IVHKFRG 725 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-------~----~~~~~~~ 725 (969)
|+.+..||+.-.... ......|...++.++|++.- .++++|+.||++.|+... + .+..+.+
T Consensus 628 d~k~~WfDldlsskP-------yk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKP-------YKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred CCeeEEEEcccCcch-------hHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 999999999765321 22336789999999999987 689999999999998621 1 2233444
Q ss_pred ec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 726 FR--NTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 726 ~~--~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
|. ....|..+.|+|...+|++++.||+|++|
T Consensus 700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceeecccceEeecccCCCceEEecCCCceEEee
Confidence 43 23558889999999999999999999998
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=4.9e-19 Score=192.12 Aligned_cols=205 Identities=21% Similarity=0.304 Sum_probs=164.0
Q ss_pred eccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 550 FIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 550 l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
-.+|++.|.++.|+. .+.|++||.|.+|++||+.++++..++. |.+.|.++.|+|....+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 457999999999997 7899999999999999999999999995 8999999999998889999999999999999985
Q ss_pred c-eEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCc-eeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 627 R-LVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 627 ~-~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~-~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
. ..-......+.|-.++|.|... .+++++.||+++-+|++... +.. ..+.|..+|.+|++++..+.+++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw--------t~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW--------TLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee--------EEEeccCCcceEEecCCCCccee
Confidence 2 2223334456799999999754 67788899999999999874 222 22789999999999999999999
Q ss_pred EEeCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCC
Q 002086 704 VTSADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADG-KYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+++.|+.|++|+...... .....-.-+...|.++.|+- -+|+.|+..+.++|||+.+..
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 999999999999543211 11111111224566777765 457788888899999998743
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=1.4e-18 Score=195.30 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=186.0
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+....+|.++|..++|-|...+|++++.|.++++||+.+.++...
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~----------------------------------- 137 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG----------------------------------- 137 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc-----------------------------------
Confidence 456779999999999999666999999999999999998766541
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE--------------
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC-------------- 587 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~-------------- 587 (969)
..+.||++.|.+++|.+ ...|++|+.||.|.|||++....
T Consensus 138 ------------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 138 ------------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred ------------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 14678999999999998 57999999999999999863220
Q ss_pred ------EE--------EeecCCC----eEEEEEecCCCCEEEEEEC-CCeEEEEeCCCceEEE---------EecC---C
Q 002086 588 ------LK--------LFAHNDY----VTCIQFNPMDDDYFISGSL-DAKVRIWSISDRLVVD---------WTDL---H 636 (969)
Q Consensus 588 ------i~--------~~~h~~~----V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~~~~~~---------~~~~---~ 636 (969)
.+ -..+... |+.+.|- |+..|++++. |+.|+|||++...... +..+ .
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs 271 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS 271 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence 00 0123333 5555554 7889999888 9999999998754321 1122 2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
..+.++.....|.+|++.+.|+.|++|++..........+. ..........-..+|++ .++++|+.|...++|.+
T Consensus 272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s----g~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS----GKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVV 346 (720)
T ss_pred eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc----CcccceeeeeeecCCCC-ceEeccCCCcceeeeee
Confidence 35788888888999999999999999999887654332211 01111122233467887 89999999999999997
Q ss_pred CcceEEE-EeecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCC
Q 002086 717 LDIVHKF-RGFRNTSSQISAAFNAD-GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 717 ~~~~~~~-~~~~~~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
....... ....|...|++++|.|. -.-++|+++|..++||++..+
T Consensus 347 s~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 347 SSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 6543322 23456677999999883 345777799999999999765
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=2e-17 Score=182.18 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=193.5
Q ss_pred CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeec
Q 002086 463 ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSL 542 (969)
Q Consensus 463 g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 542 (969)
+.+++|++.|+.|++||+.+++.+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~------------------------------------------------------ 26 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRT------------------------------------------------------ 26 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEE------------------------------------------------------
Confidence 35789999999999999987765442
Q ss_pred CCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEE-EECCCeE
Q 002086 543 SEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFIS-GSLDAKV 619 (969)
Q Consensus 543 ~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~s-gs~Dg~I 619 (969)
+.+|. .+.+++|++ +..+ ++++.++.|++||+.+++.+..+.....+..++|+| +++.+++ ++.++.|
T Consensus 27 -------~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 27 -------FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLV 97 (300)
T ss_pred -------EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeE
Confidence 22232 356789998 5555 677889999999999998887665444567889999 7776654 5568999
Q ss_pred EEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 620 RIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG-SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg-~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
++||+.+...+........+..++|+|+|.+++++..++ .+.+||..+.+...... ....+..++|+|++
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~~~~~~~~s~dg 168 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQRPRFAEFTADG 168 (300)
T ss_pred EEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCCCccEEEECCCC
Confidence 999999887776666555678999999999999988765 56778988766533211 12345678999998
Q ss_pred CceEEEEeCCCcEEEEeCCcceE--EEEeec-----CCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCCccCCCcee
Q 002086 699 PSEVLVTSADSRIRILDGLDIVH--KFRGFR-----NTSSQISAAFNADGKYIIS-ASEDSQVYVWKREEHRNASTGKRA 770 (969)
Q Consensus 699 ~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~~-----~~~~V~sl~fspdg~~LaS-gs~Dg~I~IWdl~t~~~~~t~k~~ 770 (969)
..+++++..++.|++||...... .+.... .......++|+|++++++. .+.++.|.+||+.+. +..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------~~~ 242 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------EVL 242 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------cEE
Confidence 43334555799999999765432 222111 1112346889999998654 455678999999763 211
Q ss_pred EEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc-CCCCccccCCCCCCccc
Q 002086 771 IITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG-HSRRLLPPLPKKTNKVE 849 (969)
Q Consensus 771 ~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~-~~~~~L~~~~~~s~~~~ 849 (969)
...... ..+....++|+++++++. ..++.+..|...++...
T Consensus 243 ~~~~~~--------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 243 DYLLVG--------------------------------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred EEEEeC--------------------------------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 110000 001133468888888765 45788999998888765
Q ss_pred cCCCCCCCCccccc
Q 002086 850 RVPSPPEEELSLIS 863 (969)
Q Consensus 850 ~~l~~pee~l~~is 863 (969)
..+... +.+.++.
T Consensus 285 ~~~~~~-~~~~~~~ 297 (300)
T TIGR03866 285 KSIKVG-RLPWGVV 297 (300)
T ss_pred EEEEcc-cccceeE
Confidence 554433 3334443
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=8e-18 Score=173.83 Aligned_cols=227 Identities=22% Similarity=0.346 Sum_probs=175.5
Q ss_pred ecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 447 IQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 447 L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
..-|.|.|+++...+ .|+|+++|+.||.|.|||++........ + .+ ...
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-~---li----------------------~k~---- 88 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-G---LI----------------------AKH---- 88 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-c---ce----------------------ehe----
Confidence 346999999999998 7899999999999999999853211100 0 00 000
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
.. + .....-.+|.-.|..+.|-| ..+|.+++.|.++++||..+-+....|...+.|++-+++
T Consensus 89 -------------~c-~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS 152 (397)
T KOG4283|consen 89 -------------KC-I--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS 152 (397)
T ss_pred -------------ee-e--ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcC
Confidence 00 0 00012357899999999999 689999999999999999999999999999999999999
Q ss_pred cCC--CCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCc-eee------
Q 002086 604 PMD--DDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSK-LHQ------ 672 (969)
Q Consensus 604 p~~--~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~-~~~------ 672 (969)
|.. ..++++|..|-.|++-|+.+|..-. +.+|.+.|.++.|+|..+++ ++|+.||.|++||++... +..
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 953 3577888888999999999997654 66788999999999988765 579999999999998641 111
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
....+.......|.+.+.+++|..++ .++++.+.|..+++|+..+..
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred CccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCc
Confidence 11111222346789999999999998 899999999999999965443
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.3e-18 Score=184.60 Aligned_cols=304 Identities=15% Similarity=0.216 Sum_probs=221.9
Q ss_pred ccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecc
Q 002086 370 LRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQA 449 (969)
Q Consensus 370 ~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~g 449 (969)
+.+.+.+..+.-..-.+.+.++.||+....+.. ++ .++...++-.+++.+. +++.+.-
T Consensus 198 l~~krlkDaNa~~ps~~~I~sv~FHp~~plllv----aG---------~d~~lrifqvDGk~N~---------~lqS~~l 255 (514)
T KOG2055|consen 198 LNIKRLKDANAAHPSHGGITSVQFHPTAPLLLV----AG---------LDGTLRIFQVDGKVNP---------KLQSIHL 255 (514)
T ss_pred eeeEeecccccCCcCcCCceEEEecCCCceEEE----ec---------CCCcEEEEEecCccCh---------hheeeee
Confidence 334444444444445566777888877654222 22 2233334433443333 4455555
Q ss_pred cccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
-.-+|.+++|.|+|. .++++|.-..+..||+.+.+....-
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~--------------------------------------- 296 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK--------------------------------------- 296 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeecccccccccc---------------------------------------
Confidence 678999999999999 9999999999999999887664410
Q ss_pred CCCcccccceeeecCCCceeEeccC-CCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGH-LDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH-~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~ 606 (969)
.+.|+ ...+.....++ +++|+..+..|.|.|....+++.+..+.-.+.|..++|+. +
T Consensus 297 --------------------~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-d 355 (514)
T KOG2055|consen 297 --------------------PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-D 355 (514)
T ss_pred --------------------CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-C
Confidence 11122 23445566677 7899999999999999999999999999999999999997 8
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEecCCCCE--EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWTDLHEMV--TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V--~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
+..|++++.+|.|.+||++...++..+...+.| +++|.++++.+||+|+..|.|.|||..+...... .........
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~--PkPik~~dN 433 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN--PKPIKTVDN 433 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC--CCchhhhhh
Confidence 899999999999999999999888777666655 5778889999999999999999999765322110 001112244
Q ss_pred CCCCeEEEEEcCCCCceEEEEeC--CCcEEEEeCCcceEEEEee----cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 685 STRKITGFQFSPSNPSEVLVTSA--DSRIRILDGLDIVHKFRGF----RNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~--Dg~I~IwD~~~~~~~~~~~----~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
-...|+.++|+++. +.|+.++. +..+++-.+..+. +|..+ ..-+.|+|++|+|.|.|||.|.++|.|.+|.+
T Consensus 434 Ltt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 434 LTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hheeeeeeeeCcch-hhhhhhhhccccceEEEecccee-eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 56789999999998 77777754 5678887744322 22221 23456899999999999999999999999998
Q ss_pred C
Q 002086 759 E 759 (969)
Q Consensus 759 ~ 759 (969)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 5
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.2e-18 Score=176.21 Aligned_cols=240 Identities=20% Similarity=0.337 Sum_probs=188.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
-.|+.|++-|.+||.|+.||.|.|||+.+...-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia----------------------------------------------- 58 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA----------------------------------------------- 58 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-----------------------------------------------
Confidence 789999999999999999999999999864321
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFIS 612 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~s 612 (969)
..+.+|..+|.+++|++ +..|+|+|.|..|.+||+..|.+++.+....+|+.+.|+|.+.+.+++
T Consensus 59 --------------r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va 124 (405)
T KOG1273|consen 59 --------------RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVA 124 (405)
T ss_pred --------------hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEE
Confidence 15678999999999999 899999999999999999999999999999999999999977788877
Q ss_pred EECCCeEEEEeCCCceEEEE--ec---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 613 GSLDAKVRIWSISDRLVVDW--TD---LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~~~~~--~~---~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
.-.+..-.+-++.......+ .. ......+..|.+.|+++++|...|.+.+||..+.++...+.+. ...
T Consensus 125 ~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit-------s~~ 197 (405)
T KOG1273|consen 125 TIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT-------SVQ 197 (405)
T ss_pred EEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec-------hhe
Confidence 77666666666655322211 11 1122345579999999999999999999999998876654432 135
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE-----------EEeecCCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK-----------FRGFRNTSSQISAAFNADGKYIISASE-DSQVYV 755 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~-----------~~~~~~~~~V~sl~fspdg~~LaSgs~-Dg~I~I 755 (969)
.|..+.|+..+ ..|++.+.|..||.|+....... +....+...-.+++|+.||.|++.++. -..++|
T Consensus 198 ~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYI 276 (405)
T KOG1273|consen 198 AIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYI 276 (405)
T ss_pred eeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEE
Confidence 68888898877 89999999999999996543221 111122333457899999999988875 345999
Q ss_pred EEcCCCC
Q 002086 756 WKREEHR 762 (969)
Q Consensus 756 Wdl~t~~ 762 (969)
|.-..+.
T Consensus 277 WE~~~Gs 283 (405)
T KOG1273|consen 277 WEKSIGS 283 (405)
T ss_pred EecCCcc
Confidence 9988753
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=1.9e-18 Score=188.81 Aligned_cols=243 Identities=16% Similarity=0.330 Sum_probs=198.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|..-|.++.+|...+++.|||. |.|+|||+... +...++..+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~p-------g~k~PvsqLd---------------------------- 460 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQP-------GNKSPVSQLD---------------------------- 460 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCC-------CCCCcccccc----------------------------
Confidence 59999999999999999999985 66999998642 1111111110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEec
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNP 604 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp 604 (969)
......-|..+...+ +..|++|+.-.+|.|||+......... ...-..++++.+|
T Consensus 461 ---------------------cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp 519 (705)
T KOG0639|consen 461 ---------------------CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 519 (705)
T ss_pred ---------------------ccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC
Confidence 111234577778887 899999999999999999876543222 2234678899999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
+.+..+++..||.|.|||+.+..++ .+.+|.+.+.||.++++|..|.+|+-|.+|+-||++.+...+..
T Consensus 520 -DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--------- 589 (705)
T KOG0639|consen 520 -DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--------- 589 (705)
T ss_pred -ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh---------
Confidence 9999999999999999999988655 57788899999999999999999999999999999998765543
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.....|.++.++|.+ .+|++|-.++.+.|..... ..++..+.|...|.++.|.+.|+++++.+.|+.+..|...-
T Consensus 590 dF~SQIfSLg~cP~~-dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 590 DFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred hhhhhheecccCCCc-cceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCcc
Confidence 335679999999988 8999999999999988554 34577788899999999999999999999999999999876
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.6e-19 Score=205.06 Aligned_cols=190 Identities=23% Similarity=0.480 Sum_probs=168.6
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
|.+|+.+|-+|.|+++..+|++|+.+|+|++||+++++.++
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr--------------------------------------- 106 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR--------------------------------------- 106 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh---------------------------------------
Confidence 78999999999999999999999999999999998655433
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEec
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp 604 (969)
+|.||...+..+.|+| +.++++|+.|+.+++||++...|...+ +|...|.++.|+|
T Consensus 107 ----------------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 107 ----------------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP 164 (825)
T ss_pred ----------------------hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC
Confidence 6778999999999999 899999999999999999999999888 6999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
+|.+++.|+.|.+++|||+..|++...+. |...+..+.|+|..-+++.|+.|+++++||+++.+.+... .
T Consensus 165 -~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~--------~ 235 (825)
T KOG0267|consen 165 -DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG--------K 235 (825)
T ss_pred -CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc--------C
Confidence 99999999999999999999999886555 8899999999999999999999999999999987654332 4
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.....|.++.|+|++ ..+++|..
T Consensus 236 ~~~~~v~~~~fn~~~-~~~~~G~q 258 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDG-KIVLSGEQ 258 (825)
T ss_pred CccCCceeeeecCCc-eeeecCch
Confidence 447889999999998 55655543
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=9.8e-18 Score=182.50 Aligned_cols=262 Identities=17% Similarity=0.228 Sum_probs=199.1
Q ss_pred ccccceeeeEecccccCEEEEEEeCCC--CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDA--RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg--~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
++..+......+-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+.
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----------------------------- 222 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----------------------------- 222 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------------
Confidence 444555667788899999999999954 4899999999999999963211
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF- 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~- 591 (969)
....+..+..|..+|.++.|+| ...+++.|+||+|++-|++......++
T Consensus 223 ----------------------------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s 274 (498)
T KOG4328|consen 223 ----------------------------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLS 274 (498)
T ss_pred ----------------------------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhh
Confidence 1112346778999999999999 579999999999999999987654444
Q ss_pred --ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcC
Q 002086 592 --AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 592 --~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~ 666 (969)
.....+.++.|+. +...++.+..=|.+.+||++++. ...+.-|...|..|+++|.. .+|++++.|++.+|||++
T Consensus 275 ~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 275 LDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred cCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 2345677888887 66667777777799999998764 34455566789999999965 467899999999999998
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC----cceEEEE-eecC----CCCeEEEEE
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL----DIVHKFR-GFRN----TSSQISAAF 737 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~----~~~~~~~-~~~~----~~~V~sl~f 737 (969)
........ ......|...|.+..|+|.+.. |++.+.|..|+|||.. ....... .|.+ ........|
T Consensus 354 ~l~~K~sp----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W 428 (498)
T KOG4328|consen 354 QLRGKASP----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAW 428 (498)
T ss_pred hhcCCCCc----ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhhee
Confidence 75443220 1122578999999999999965 9999999999999963 1111111 1111 223456789
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 738 NADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 738 spdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.|+..++++|..-..|-|+|-..+
T Consensus 429 ~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 429 DPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred CCCccEEEEeccCcceeEEcCCCC
Confidence 999999999999999999998763
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=5.6e-18 Score=194.06 Aligned_cols=198 Identities=18% Similarity=0.375 Sum_probs=160.8
Q ss_pred CEEEEEecC--CcEEEEEeCCCcEEEEECCC---CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE
Q 002086 556 DVLDLSWSR--SHLLLSSSMDKTVRLWDMET---KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 556 ~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t---~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
.+.+|.|.. .++|+|++..|.|.+||+.. .+.+..| .|+..+.++.|++...++|++|+.||+|++||++...-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 345678876 79999999999999999987 4455555 89999999999998899999999999999999998765
Q ss_pred EE-EecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 630 VD-WTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 630 ~~-~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.. +......|..|.|+|. +.+|+++...|.+.+||++.... ...++..|.++|.|+.|+|+. .+|++|+.
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-------~~~k~~AH~GpV~c~nwhPnr-~~lATGGR 240 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-------CEKKLTAHNGPVLCLNWHPNR-EWLATGGR 240 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-------HHHHhhcccCceEEEeecCCC-ceeeecCC
Confidence 44 4445578999999994 67899999999999999997654 223347899999999999955 89999999
Q ss_pred CCcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCE-EEEEeC--CCcEEEEEcCCC
Q 002086 708 DSRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKY-IISASE--DSQVYVWKREEH 761 (969)
Q Consensus 708 Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~-LaSgs~--Dg~I~IWdl~t~ 761 (969)
|+.|+|||..... ..........+|.++.|-|+..+ |++++. |-.|+|||+..+
T Consensus 241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 9999999966322 22223345567899999998765 566554 778999999864
No 142
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.4e-17 Score=171.13 Aligned_cols=218 Identities=20% Similarity=0.301 Sum_probs=177.5
Q ss_pred cccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCC--EEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 419 KNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDAR--FLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 419 ~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~--~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
..+..+.|| |++....++.|-.|.+.|++|.|.++-. .|++|+.||.|.+|++..-+++.
T Consensus 60 ssDetI~IY---------Dm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~--------- 121 (362)
T KOG0294|consen 60 SSDETIHIY---------DMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK--------- 121 (362)
T ss_pred CCCCcEEEE---------eccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee---------
Confidence 345556655 5555556677888999999999999765 89999999999999998655443
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK 575 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg 575 (969)
.+++|.+.|+.++.+| +++-++.+.|+
T Consensus 122 ----------------------------------------------------slK~H~~~Vt~lsiHPS~KLALsVg~D~ 149 (362)
T KOG0294|consen 122 ----------------------------------------------------SLKAHKGQVTDLSIHPSGKLALSVGGDQ 149 (362)
T ss_pred ----------------------------------------------------eecccccccceeEecCCCceEEEEcCCc
Confidence 6788999999999999 88889999999
Q ss_pred cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 576 TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
.+++||+-+|+.-....-...-+.|.|+| .+.+|+.++.+ .|-||.+.+..+.........+.|+.|. ++..|++|.
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGG 226 (362)
T ss_pred eeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEec
Confidence 99999999998777765555555699999 89988888775 4999999988877766666778888877 456899999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc--CCCCceEEEEeCCCcEEEEeCCc
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS--PSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs--pd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
.++.|.+||..+..+... ..+|..+|..+.+- |.+ .+|++++.||.|++||...
T Consensus 227 d~~~i~~~D~ds~~~~~~--------~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTE--------FLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred CCceEEEeccCCCcccee--------eecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccc
Confidence 999999999998554322 27899999999843 344 7999999999999999653
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=1.6e-17 Score=174.29 Aligned_cols=246 Identities=22% Similarity=0.367 Sum_probs=185.0
Q ss_pred ccccCEEEEEEeCC----CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 449 AHEGSIWTIKFSLD----ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 449 gH~~~I~~l~fSpD----g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
.|...-+.++|+-| ..+||.||.-|.|+|.|+.++++..
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~------------------------------------- 129 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK------------------------------------- 129 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------------------------------------
Confidence 48888999999874 3489999999999999998766543
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe----ecCCCeE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF----AHNDYVT 598 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~~V~ 598 (969)
.+.+|...|..|.|+| .++++++|.|.+|++||+++..|+.+| +|.+.|.
T Consensus 130 ------------------------~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 130 ------------------------NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred ------------------------ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 5678999999999999 579999999999999999999999998 6999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-----------------------------EecCCCCEEEEEEccCCC
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-----------------------------WTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-----------------------------~~~~~~~V~sv~fspdg~ 649 (969)
++.|++ ++.+|++++.|..|++|++...+... ..-|...|-|+.|- |+
T Consensus 186 SvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd 262 (385)
T KOG1034|consen 186 SVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD 262 (385)
T ss_pred EEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh
Confidence 999999 99999999999999999997432110 11123344455554 57
Q ss_pred EEEEEeCCCcEEEEEcCC-Ccee-e----eeeeeecccccCCCCCeEE--EEEcCCCCceEEEEeCCCcEEEEeCCcce-
Q 002086 650 NALIGSHKGSCRLYSIED-SKLH-Q----LNQVDFQTKKKSSTRKITG--FQFSPSNPSEVLVTSADSRIRILDGLDIV- 720 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~-~~~~-~----~~~~~~~~~~~~h~~~It~--l~fspd~~~~l~sgs~Dg~I~IwD~~~~~- 720 (969)
++++=+.++.|..|..-. .+.. . ...........-....|.- .+|.|-. ..|+.|...|.|++||+....
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCC
Confidence 889988889999998721 1110 0 0000011111222334444 4556655 789999999999999976432
Q ss_pred ---EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 721 ---HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 721 ---~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.++........|...+|+.||.+|+..++|++|.-||..
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 233334455678899999999999999999999999864
No 144
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.7e-17 Score=170.61 Aligned_cols=289 Identities=17% Similarity=0.222 Sum_probs=201.0
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc-----EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEE
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS-----CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~-----~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IW 622 (969)
.|+||.+.|++++|+. +++|+|++.|++|+||+++... +++.--.-+..+.+.|.|.....++++-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 6899999999999997 8999999999999999997532 333222233668899999555566677777789999
Q ss_pred eCCCce-------EEEE------ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 623 SISDRL-------VVDW------TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 623 Dl~~~~-------~~~~------~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
-+...+ .+.+ ..|.-.+..+-...++.+|++++.|..|.+|+++ ++.+... ......-
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i--------dtnq~~n 231 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI--------DTNQSSN 231 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee--------ccccccc
Confidence 874321 1111 1223346667777788999999999999999999 5443322 3345556
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEeC--------CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILDG--------LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD~--------~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+..+.+|+| .++++++..--|++|.. .+....+....|...|..++|+++...++|.+.||+++|||++-.
T Consensus 232 ~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 232 YDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred cceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 778899998 89999999999999982 234566677788899999999999999999999999999998741
Q ss_pred CccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccC
Q 002086 762 RNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPL 841 (969)
Q Consensus 762 ~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~ 841 (969)
-.. ++...++.. . ...-...+..|.....||.++- ++++....|..|
T Consensus 311 Y~~--~qDpk~Lk~-----------------------------g-~~pl~aag~~p~RL~lsP~g~~-lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 311 YEA--GQDPKILKE-----------------------------G-SAPLHAAGSEPVRLELSPSGDS-LAVSFGSDLKVF 357 (420)
T ss_pred Eec--CCCchHhhc-----------------------------C-CcchhhcCCCceEEEeCCCCcE-EEeecCCceEEE
Confidence 000 000000000 0 0111223445555667777743 445555566666
Q ss_pred CCCCCccccCC-CCCCCCccccccCCCCCCccccCCCccc
Q 002086 842 PKKTNKVERVP-SPPEEELSLISHDPGISESFTSNSSSIR 880 (969)
Q Consensus 842 ~~~s~~~~~~l-~~pee~l~~is~hP~~~~~~~~s~~~~r 880 (969)
....++.+..+ ..|++++.+|+|.|..--+.+.++-.+|
T Consensus 358 ~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vr 397 (420)
T KOG2096|consen 358 ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVR 397 (420)
T ss_pred EcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeee
Confidence 65555554443 6799999999999876666666665555
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=3.6e-17 Score=178.16 Aligned_cols=205 Identities=17% Similarity=0.286 Sum_probs=170.1
Q ss_pred eEeccCCCCEEEEEecC--C-cEEEEEeCCCcEEEEECCCCcE----EEEe-ecCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 548 CSFIGHLDDVLDLSWSR--S-HLLLSSSMDKTVRLWDMETKSC----LKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~--~-~~L~Sgs~DgtV~IWDl~t~~~----i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
....-|.+.|++++|+| . +++++|..-|+|-+||+.+.+. +..+ .|..+|.+|.|+|.+...+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 35667899999999999 4 7899999999999999963332 2233 8999999999999888999999999999
Q ss_pred EEEeCCCceEEE---EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 620 RIWSISDRLVVD---WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 620 ~IWDl~~~~~~~---~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
++-|+.+...-. .......+..+.|+.+...++++..=|...+||+++..... .....|...|..++++|
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-------~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY-------ENLRLHKKKITSVALNP 332 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-------hhhhhhhcccceeecCC
Confidence 999998865333 33334567888999998999999988899999999876421 11255777999999999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceE----EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVH----KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~----~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
..+.+|++++.|++++|||+++... .+....|...|.++.|||.+..|+|.+.|..|+|||..
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 9999999999999999999775432 35566788899999999988889999999999999984
No 146
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.4e-17 Score=168.50 Aligned_cols=210 Identities=18% Similarity=0.315 Sum_probs=168.1
Q ss_pred ceeeeEecccccCEEEEEEeC--CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 441 LHLCQEIQAHEGSIWTIKFSL--DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSp--Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.+++.+|.||+++|+.++|-. -|.+||+|+.||.|.||.-++|+-.+
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k------------------------------- 94 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK------------------------------- 94 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh-------------------------------
Confidence 356788999999999999987 79999999999999999977653211
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCC-c-EE--EEe
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETK-S-CL--KLF 591 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~-~-~i--~~~ 591 (969)
......|...|++++|.| +-.|++++.||.|.|.+++.. . .. ..+
T Consensus 95 ----------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 95 ----------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred ----------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 124567999999999998 678999999999999998765 2 22 233
Q ss_pred ecCCCeEEEEEecCC--C-----------CEEEEEECCCeEEEEeCCCce---EEEEecCCCCEEEEEEccCC----CEE
Q 002086 592 AHNDYVTCIQFNPMD--D-----------DYFISGSLDAKVRIWSISDRL---VVDWTDLHEMVTAACYTPDG----QNA 651 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~--~-----------~~L~sgs~Dg~I~IWDl~~~~---~~~~~~~~~~V~sv~fspdg----~~L 651 (969)
.|.-.|++++|.|.. + ..|++|+.|..|+||+...+. -..+.+|.+.|+.++|.|.- .+|
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence 899999999999831 2 469999999999999998863 22367788999999999964 479
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 652 LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 652 asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
++++.||++.||..+......... ........+..+.|+..| ..|++++.|+.|.+|.
T Consensus 227 AS~SqDg~viIwt~~~e~e~wk~t-----ll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEEYEPWKKT-----LLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWK 284 (299)
T ss_pred EEecCCCcEEEEEecCccCccccc-----ccccCCcceEEEEEeccc-cEEEEecCCcEEEEEE
Confidence 999999999999887332111111 113356779999999998 8999999999999997
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=3.3e-17 Score=179.01 Aligned_cols=210 Identities=18% Similarity=0.294 Sum_probs=169.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CCEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EMVTA 641 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~V~s 641 (969)
..++++|+..++|+|||++...+.+.+ +|...|++|.++- .+.+|++++..|.|.|-.+.++.....+.+. ..|.-
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 489999999999999999976666655 8999999999998 8899999999999999999998776666655 45679
Q ss_pred EEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 642 ACYTPDGQNAL-IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 642 v~fspdg~~La-sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
+.|++..++++ +++.+|.|.+||+....... .....|..+...|+|+|.++.+|++.+.|..|++||.....
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCccc-------chhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 99999877654 68999999999998765422 22367899999999999999999999999999999976432
Q ss_pred EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEe
Q 002086 721 HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVA 788 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~ 788 (969)
. ........+...++|.++|.+|+.|+..|.|+.||++..+ .++.....+...++|..|...
T Consensus 243 s-~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-----~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 243 S-TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-----APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred c-cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC-----CCceEeeecccceeEEEeeec
Confidence 2 2222345567899999999999999999999999999732 234444444455677766654
No 148
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=4.1e-17 Score=174.60 Aligned_cols=251 Identities=22% Similarity=0.305 Sum_probs=192.3
Q ss_pred ecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 447 IQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 447 L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
+.||+++|..++|+| +...||+||.|.+|.||++-.+.+...
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------- 119 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------- 119 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------------------------------------
Confidence 679999999999999 667999999999999999875433221
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
...|+..|.||+..|--+.|+| .+.|++++.|.+|.|||+.+++.+..+.|.+.|+++.|+
T Consensus 120 -----------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn 182 (472)
T KOG0303|consen 120 -----------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFN 182 (472)
T ss_pred -----------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEec
Confidence 1256678999999999999999 799999999999999999999999889999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCC-CCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeeeee
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLH-EMVTAACYTPDGQNALIGS---HKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~-~~V~sv~fspdg~~Lasgs---~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
. ++.+|++++.|.+|+|||.++++++... .|. .....+.|-.+|..+-+|- .+..+-+||..+.......+
T Consensus 183 ~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~--- 258 (472)
T KOG0303|consen 183 R-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ--- 258 (472)
T ss_pred c-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE---
Confidence 9 9999999999999999999999988765 444 3355677888888555554 46789999987654321111
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
.......|.---|.++..-.+++|-.|+.||.|...+ ..+.+..+....+...+.|-|...+=+ +..-..++
T Consensus 259 ---elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRGl~V--s~cEI~rf 333 (472)
T KOG0303|consen 259 ---ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRGLDV--SKCEIARF 333 (472)
T ss_pred ---EeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccccccc--hHHHHHHH
Confidence 1233455666668888866778888999999999654 245555555566667777777543222 22334556
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|++.+
T Consensus 334 yKl~~ 338 (472)
T KOG0303|consen 334 YKLHE 338 (472)
T ss_pred HHhhc
Confidence 66554
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.5e-17 Score=175.76 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=216.2
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
.+.|++|.|+|...+|++||.|++++||.++....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------------- 247 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------------- 247 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC---------------------------------------------
Confidence 57899999999999999999999999999863111
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEe---ecC-CCeEEEEEec
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLF---AHN-DYVTCIQFNP 604 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~-~~V~sv~fsp 604 (969)
..++.+.--..+|.+.+|.| +. .+++++....++.||+.+.+..+.- ++. ..+....++|
T Consensus 248 --------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 248 --------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred --------------hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC
Confidence 01123333456889999999 65 8999999999999999998877654 343 4577778889
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
++++|+..+..|.|.+....+++.+..+...+.|..++|+.+++.|++.+.+|.|.+||++...+.....- .
T Consensus 314 -d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-------~ 385 (514)
T KOG2055|consen 314 -DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-------D 385 (514)
T ss_pred -CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-------c
Confidence 99999999999999999999999999999999999999999999999999999999999999876554321 1
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------ceEEEEeecCCCCeEEEEEeCCCCEEEEEeC--CCcEEEE
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLD------IVHKFRGFRNTSSQISAAFNADGKYIISASE--DSQVYVW 756 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~--Dg~I~IW 756 (969)
..-.-+.++.++++ .+|++|+..|.|.|||... .........-...|+++.|++|+++||.++. +..+++-
T Consensus 386 G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLV 464 (514)
T KOG2055|consen 386 GSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLV 464 (514)
T ss_pred CccceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEE
Confidence 12234567777877 7999999999999999433 2222233334567899999999999998875 4566666
Q ss_pred EcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCC
Q 002086 757 KREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRR 836 (969)
Q Consensus 757 dl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~ 836 (969)
-+.+. ++-.-||.. ...-+...+..|||.+-+++-+.+.+
T Consensus 465 HvPS~------------------------TVFsNfP~~----------------n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 465 HVPSC------------------------TVFSNFPTS----------------NTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred eccce------------------------eeeccCCCC----------------CCcccceEEEEecCCCceEEeecCCC
Confidence 55541 111112222 11112344677899888888888888
Q ss_pred ccccCCC
Q 002086 837 LLPPLPK 843 (969)
Q Consensus 837 ~L~~~~~ 843 (969)
.+..|..
T Consensus 505 rv~l~kL 511 (514)
T KOG2055|consen 505 RVHLFKL 511 (514)
T ss_pred ceeeEee
Confidence 8888853
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=3.3e-17 Score=174.57 Aligned_cols=212 Identities=19% Similarity=0.324 Sum_probs=164.8
Q ss_pred ceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.+.+.++.+|.+.=++|+|||-. -.|+||.--+.|++|...+|.-..
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-------------------------------- 248 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-------------------------------- 248 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee--------------------------------
Confidence 45567789999999999999932 258888888899999987643211
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC---cEEEEeecC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK---SCLKLFAHN 594 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~---~~i~~~~h~ 594 (969)
... -|.+|+..|-+|+|+| ...|++||.||+|+|||++.+ .++.+-.|.
T Consensus 249 -----------------------d~~---Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 249 -----------------------DQR---PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred -----------------------cCc---cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 111 3567999999999999 789999999999999999988 567777999
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCc
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~ 669 (969)
..|+.|.|+. ...+|++|+.||+++|||++.-+ +..+..|..+|++|.|+|.. ..|++++.|..|.|||+.-..
T Consensus 303 sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 303 SDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999998 66699999999999999998643 34677888999999999964 567788999999999996432
Q ss_pred e------eeee---eeeeccc-ccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 670 L------HQLN---QVDFQTK-KKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 670 ~------~~~~---~~~~~~~-~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
- .... .++.+.. ....+..+..+.|+++.+.++++++.||--
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 2 0000 0000000 022356788899999998999999988853
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.4e-15 Score=172.83 Aligned_cols=244 Identities=16% Similarity=0.219 Sum_probs=195.0
Q ss_pred eeeeEeccccc-CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 442 HLCQEIQAHEG-SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 442 ~l~~~L~gH~~-~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+...|.||++ .|-+|+|+ ++..|++.+.+|.|.-||+.+++...
T Consensus 59 ~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~--------------------------------- 104 (691)
T KOG2048|consen 59 FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKY--------------------------------- 104 (691)
T ss_pred eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeE---------------------------------
Confidence 34556777764 69999999 55678899999999999999877655
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEE--e-ecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKL--F-AHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~--~-~h~~~ 596 (969)
.+....+.|++++.+| +..++.|+.||.+.+++...++.... + ..++.
T Consensus 105 ----------------------------~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sR 156 (691)
T KOG2048|consen 105 ----------------------------NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSR 156 (691)
T ss_pred ----------------------------EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccce
Confidence 3444668899999999 88999999999888888887776543 2 45689
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-----EecCC----CCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-----WTDLH----EMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-----~~~~~----~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
|.++.|+| ++..|++|+.||.|++||...+.-+. +.... .-|.++.|-.+ ..|++|...|+|.+||...
T Consensus 157 vLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 157 VLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF 234 (691)
T ss_pred EEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC
Confidence 99999999 89999999999999999999887555 22222 34788888855 5899999999999999999
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc----eEEEEeecCCCCeEEEEEeCCCCE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI----VHKFRGFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~----~~~~~~~~~~~~V~sl~fspdg~~ 743 (969)
+.+.+.. ..|...|.+++..+++ ..+++++.|+.|..|..... +.......|...|.+++..++ .
T Consensus 235 gTLiqS~--------~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~ 303 (691)
T KOG2048|consen 235 GTLIQSH--------SCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--A 303 (691)
T ss_pred cchhhhh--------hhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--e
Confidence 8865443 6789999999999987 79999999999988874432 222233346667889988877 8
Q ss_pred EEEEeCCCcEEEEEcCC
Q 002086 744 IISASEDSQVYVWKREE 760 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t 760 (969)
|++|+.|..+.+-....
T Consensus 304 l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 304 LISGGRDFTLAICSSRE 320 (691)
T ss_pred EEecceeeEEEEccccc
Confidence 99999999999877665
No 152
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.3e-17 Score=185.77 Aligned_cols=261 Identities=20% Similarity=0.286 Sum_probs=192.4
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
++..|.+.|..+.|.+-...|++|+.||+|++|+++....-
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--------------------------------------- 329 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--------------------------------------- 329 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------------------------------
Confidence 78899999999999999999999999999999999531000
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc----------EE-EEeec
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS----------CL-KLFAH 593 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----------~i-~~~~h 593 (969)
-...-+++.+|.+|.++|.|+++.. +..+++|+.||+|+.|++.... .. ...+|
T Consensus 330 --------------~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh 395 (577)
T KOG0642|consen 330 --------------AEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH 395 (577)
T ss_pred --------------cccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecc
Confidence 0023467789999999999999998 8999999999999999765211 11 23399
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
++.|+.+++++ ....|++++.||+|++|+........+.. ..+..+.+.+-... ++....+.....+++.+.+..
T Consensus 396 tdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~ 472 (577)
T KOG0642|consen 396 TDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVV 472 (577)
T ss_pred ccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhhh
Confidence 99999999999 78889999999999999998877633222 22344555554432 222222333444444333322
Q ss_pred eeeeeeec--ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 672 QLNQVDFQ--TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 672 ~~~~~~~~--~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
....+... .........+..+.++|.+ .+.+++..|+.|+++|.......+....|...++++++.|+|.+|++++.
T Consensus 473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 473 SDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred hheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecC
Confidence 22111100 0011223457778888887 79999999999999998877777777778889999999999999999999
Q ss_pred CCcEEEEEcCCCCc
Q 002086 750 DSQVYVWKREEHRN 763 (969)
Q Consensus 750 Dg~I~IWdl~t~~~ 763 (969)
|+.|++|++..+.+
T Consensus 552 d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 552 DGSVRLWKLDVKTC 565 (577)
T ss_pred Cceeehhhccchhe
Confidence 99999999987543
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=3e-17 Score=178.33 Aligned_cols=207 Identities=18% Similarity=0.276 Sum_probs=171.0
Q ss_pred ecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 447 IQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
-.+|+++|..|.|+..- +.||+||.|.+|++||+.+|++..
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-------------------------------------- 280 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-------------------------------------- 280 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce--------------------------------------
Confidence 45899999999999854 489999999999999999877644
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc-EEEEeecCCCeEEEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS-CLKLFAHNDYVTCIQF 602 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~-~i~~~~h~~~V~sv~f 602 (969)
.+..|.+.|.++.|++ ...|++|+.|++|.+.|.+... .-..+...+.|-.++|
T Consensus 281 -----------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 281 -----------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred -----------------------ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence 4556999999999998 7899999999999999999533 3345578899999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
.|.....|+++..||+|+-+|++.. .+.....|...|.++++++.- .++++++.++.+++|++..........-
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~--- 414 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH--- 414 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc---
Confidence 9988899999999999999999875 355677899999999999865 4677899999999999987654322211
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
....+...|+++.|+-+..++.|+..+.++|||+....
T Consensus 415 ---~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 415 ---SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ---cccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 11233478889999988899999999999999976543
No 154
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=5.2e-18 Score=194.73 Aligned_cols=250 Identities=20% Similarity=0.389 Sum_probs=189.9
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
+..+.+..|.||..+|+|+.|...|.+++||+.|..|+||..+++.++.
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA------------------------------- 226 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA------------------------------- 226 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-------------------------------
Confidence 3445566788999999999999999999999999999999988766544
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
...||.+.|++++.+. +.+++++|.|..|++|.+..+.++.++ +|++.
T Consensus 227 ------------------------------s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga 276 (1113)
T KOG0644|consen 227 ------------------------------SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA 276 (1113)
T ss_pred ------------------------------cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence 5678999999999987 778999999999999999999998776 99999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-----ecCCCCEEEEEEccCCCEEEEEeCCC-------------
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-----TDLHEMVTAACYTPDGQNALIGSHKG------------- 658 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-----~~~~~~V~sv~fspdg~~Lasgs~dg------------- 658 (969)
|++|+|+| +.+.+.||++++||.+-...... .....-+.++.|..++..+++|+.|+
T Consensus 277 vtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 277 VTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred eeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 99999999 33788999999999872111110 01112233344444444444444443
Q ss_pred ------------------------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 659 ------------------------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 659 ------------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
.+.+|++.++.+. ....+|...+..+.++|.++.....++.||.+.||
T Consensus 352 ~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~--------H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 352 SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL--------HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIW 423 (1113)
T ss_pred ccceEEEeccccccccceeeeeeeEeeeeecccchhh--------hhhcccccceeeeeecCCCcHhhhhccCCCceEee
Confidence 4445555544432 22367888999999999998888999999999999
Q ss_pred eCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 715 DGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 715 D~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
|+......-........+....||+||..++....-|.++|...-..+
T Consensus 424 di~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 424 DIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 977644332222335667788999999999999999999998876543
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.2e-16 Score=175.09 Aligned_cols=288 Identities=18% Similarity=0.209 Sum_probs=200.7
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.....+.||++.|.+|...+ +..|++|+.||+|+||.+.++.|+.++...+.|.||+|+|.....++++.....+.|.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 34457899999999999999 99999999999999999999999999999999999999995444555555555555554
Q ss_pred CCCc--------------------------------------eEEEEecCCCCEEEEEEccCCCEEEEEeCC---CcEEE
Q 002086 624 ISDR--------------------------------------LVVDWTDLHEMVTAACYTPDGQNALIGSHK---GSCRL 662 (969)
Q Consensus 624 l~~~--------------------------------------~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~I 662 (969)
..-| -+...+.+...|..+.|+..|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 3111 012345566789999999999999987654 47889
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK 742 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~ 742 (969)
+++.....+.. .....+.|.++.|+|..+ +|+++ ....|+|||+.....+-+.......|..++++|.|.
T Consensus 551 HQLSK~~sQ~P--------F~kskG~vq~v~FHPs~p-~lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 551 HQLSKRKSQSP--------FRKSKGLVQRVKFHPSKP-YLFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred EecccccccCc--------hhhcCCceeEEEecCCCc-eEEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 99876654321 244567899999999874 44443 356799999765443333444556688999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCC-CCccEEEcccccccCCCCcccc
Q 002086 743 YIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEP-PPTPVQTKKHAKRISSNPTSAT 821 (969)
Q Consensus 743 ~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~-~~~~v~~~~~~~~~~~~~~~~~ 821 (969)
.|+.|+.|+.++.||++- +...+...+.|+... ..+.+.-.++.+..|.+ +.+.++.-
T Consensus 621 nli~gs~d~k~~WfDldl------sskPyk~lr~H~~av-r~Va~H~ryPLfas~sdDgtv~Vfhg-------------- 679 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDL------SSKPYKTLRLHEKAV-RSVAFHKRYPLFASGSDDGTVIVFHG-------------- 679 (733)
T ss_pred eEEEecCCCeeEEEEccc------CcchhHHhhhhhhhh-hhhhhccccceeeeecCCCcEEEEee--------------
Confidence 999999999999999986 333344444444321 23444445555555533 44444411
Q ss_pred cCCCCCCccccCCCC----ccccCCCCCCccccCCCCCCCC----ccccccCCCCCCccccC-CCccc
Q 002086 822 SSPTKEGSPAGHSRR----LLPPLPKKTNKVERVPSPPEEE----LSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 822 ~SP~~~~i~~~~~~~----~L~~~~~~s~~~~~~l~~pee~----l~~is~hP~~~~~~~~s-~~~~r 880 (969)
.+..|. .+.|. +.+.+|+.. ++..-|||..++.|+++ +.++|
T Consensus 680 ---------~VY~Dl~qnpliVPl--------K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 680 ---------MVYNDLLQNPLIVPL--------KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred ---------eeehhhhcCCceEee--------eeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 111111 22222 334556655 77778999999999998 55666
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=4.6e-16 Score=174.63 Aligned_cols=247 Identities=15% Similarity=0.290 Sum_probs=191.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
|...+.++++|+||.+.|+|++|+.||+++|+|+.|+.|.||.-.-...+
T Consensus 39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L------------------------------ 88 (1081)
T KOG1538|consen 39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL------------------------------ 88 (1081)
T ss_pred eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee------------------------------
Confidence 55666788999999999999999999999999999999999985421111
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND 595 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~ 595 (969)
-..|++.|.|+.|+| .+.|++++-. ..-+|........ ......
T Consensus 89 ---------------------------------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~kss~ 133 (1081)
T KOG1538|consen 89 ---------------------------------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHKSSS 133 (1081)
T ss_pred ---------------------------------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhhhhe
Confidence 135999999999999 8888888754 3567876644322 223455
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec---CCCCEEEEEEccCC-----CEEEEEeCCCcEEEEEcCC
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---LHEMVTAACYTPDG-----QNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~~~V~sv~fspdg-----~~Lasgs~dg~I~IwDl~~ 667 (969)
.|.+++|.. +|.+|+.|-.+|+|.|-+-...+...... .+.+|.+++|+|.. ..+++.....++.+|.+..
T Consensus 134 R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 134 RIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred eEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 788899998 99999999999999998766555444444 56789999999963 5788888888999998876
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
...-.. +.-.-...|+.+.++| .++++|+.|+.+.+|.- +.+..-..-.....|..+...|++++++.|
T Consensus 213 ~~Igk~---------r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 213 KQIGKD---------RALNFDPCCISYFTNG-EYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred eeeccc---------ccCCCCchhheeccCC-cEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEE
Confidence 443211 3334456789999988 89999999999999973 333333333356679999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.||+|..|++..
T Consensus 282 CqDGTiACyNl~f 294 (1081)
T KOG1538|consen 282 CQDGTIACYNLIF 294 (1081)
T ss_pred EccCeeehhhhHH
Confidence 9999999999754
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.3e-17 Score=193.87 Aligned_cols=249 Identities=16% Similarity=0.240 Sum_probs=194.2
Q ss_pred cCEEEEEEeCCCC----EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 452 GSIWTIKFSLDAR----FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 452 ~~I~~l~fSpDg~----~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
..-+.|+|.+.|. +||.|..||.|.+||...- +. +
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~---~------------------------------------ 103 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IA---N------------------------------------ 103 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhh--cc---C------------------------------------
Confidence 3456888988665 4899999999999997641 00 0
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQF 602 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~f 602 (969)
.....+..+..|++.|..+.|++ ++.|++|+.||.|.|||+..-+.-... ...+.|.+++|
T Consensus 104 --------------~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 104 --------------ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred --------------cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 01122335677999999999998 679999999999999999875544443 35678999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceE-EEEecCC--CCEEEEEEccCCC-EEEEEeCCC---cEEEEEcCCCceeeeee
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDLH--EMVTAACYTPDGQ-NALIGSHKG---SCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~--~~V~sv~fspdg~-~Lasgs~dg---~I~IwDl~~~~~~~~~~ 675 (969)
+......|++++.+|.+.|||++..+. +.+..+. ..+..++|+|+.. .|++++.|. .|.+||++.-...
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP---- 245 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP---- 245 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc----
Confidence 986677899999999999999998754 4444333 3478999999864 566666554 7999998865431
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC-EEEEEeCCCcEE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK-YIISASEDSQVY 754 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~-~LaSgs~Dg~I~ 754 (969)
.....+|...|.++.|++.++.++++++.|+.|.+|+..+.............+..+.|+|... .|++++-||.|-
T Consensus 246 ---~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 246 ---LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred ---hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 1222689999999999999989999999999999999887665555555667789999999654 888899999999
Q ss_pred EEEcCCCC
Q 002086 755 VWKREEHR 762 (969)
Q Consensus 755 IWdl~t~~ 762 (969)
||.+....
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99998753
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.2e-16 Score=164.71 Aligned_cols=267 Identities=16% Similarity=0.290 Sum_probs=186.3
Q ss_pred CcccccccceeeeEecccccCEEEEEEeC--CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccC
Q 002086 433 KSYKDLSALHLCQEIQAHEGSIWTIKFSL--DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSL 510 (969)
Q Consensus 433 ~~l~dl~~~~l~~~L~gH~~~I~~l~fSp--Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~ 510 (969)
.++++..+++.+.++++|...+..++|.. ....+.+|+.||+||+||+........
T Consensus 52 v~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---------------------- 109 (376)
T KOG1188|consen 52 VRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---------------------- 109 (376)
T ss_pred EEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----------------------
Confidence 34567777888999999999999999987 456899999999999999986433221
Q ss_pred CCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC-CCEEEEEecC-CcEEEEEe----CCCcEEEEECCC
Q 002086 511 DGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL-DDVLDLSWSR-SHLLLSSS----MDKTVRLWDMET 584 (969)
Q Consensus 511 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~-~~I~~l~fs~-~~~L~Sgs----~DgtV~IWDl~t 584 (969)
..+.+|. .+..+++-.- ++.+++|. .|-.|.+||++.
T Consensus 110 -------------------------------------~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~ 152 (376)
T KOG1188|consen 110 -------------------------------------ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRS 152 (376)
T ss_pred -------------------------------------eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecc
Confidence 1222333 3455666553 56666664 467899999998
Q ss_pred CcE-EEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCC-CEEEEEeC
Q 002086 585 KSC-LKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDG-QNALIGSH 656 (969)
Q Consensus 585 ~~~-i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg-~~Lasgs~ 656 (969)
.+. +..+ .|.+.|++|.|+|.+.++|++|+.||.|.|||+... .++..+.+...|.++.|..++ +.|.+-+.
T Consensus 153 ~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH 232 (376)
T KOG1188|consen 153 EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH 232 (376)
T ss_pred ccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc
Confidence 776 5555 799999999999999999999999999999999754 356677778889999999887 46888899
Q ss_pred CCcEEEEEcCCCceeeeeeeeecc----cccCCCCCeEEEEEcCCCCceEEEEeC-CCcEEEEeCC--------cceEEE
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQT----KKKSSTRKITGFQFSPSNPSEVLVTSA-DSRIRILDGL--------DIVHKF 723 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~----~~~~h~~~It~l~fspd~~~~l~sgs~-Dg~I~IwD~~--------~~~~~~ 723 (969)
.++..+|++..+........+... ........+... .+|.+...+++++. -+...++-.. +....+
T Consensus 233 ~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l 311 (376)
T KOG1188|consen 233 METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL 311 (376)
T ss_pred cCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccc
Confidence 999999999988743222111000 001111111111 23444345555544 4555554321 112222
Q ss_pred EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 724 RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 724 ~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.+ .|..-|.++.|...+.++.||++||.+.+|..+.
T Consensus 312 ~g-~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 312 QG-GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cC-CcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 22 1445567888888899999999999999999754
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=1.9e-15 Score=168.96 Aligned_cols=123 Identities=21% Similarity=0.309 Sum_probs=103.8
Q ss_pred EEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 639 VTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 639 V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
|+.+.|.| |...|++++.||.|++|.+..+...... .........|...|+.+.|+|--...|++++.|.+|++||+.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~-~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE-MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCccc-CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 77788888 5678999999999999999876543221 123334478999999999999877899999999999999998
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+.........|...|..++|||||+.+|+.+.||+|++|+-.+.+
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 877777777788899999999999999999999999999987654
No 160
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6.1e-15 Score=153.94 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=156.6
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc----EEEEe-ecCCCeEEEEEec-CCCCEEEEEECCCeEEEEe
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS----CLKLF-AHNDYVTCIQFNP-MDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----~i~~~-~h~~~V~sv~fsp-~~~~~L~sgs~Dg~I~IWD 623 (969)
.+|.+-|.++.|.. |..+++|+.|++|+|||..... +.... .|.+.|..|.|.+ .-|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47899999999998 9999999999999999975432 33333 7999999999965 3478999999999999997
Q ss_pred CCCc----------eEEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc-------ccC
Q 002086 624 ISDR----------LVVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK-------KKS 684 (969)
Q Consensus 624 l~~~----------~~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~-------~~~ 684 (969)
-... +...+......|+.+.|.|. |-.+++++.||.+|||+..+.--.. +..+..+ ...
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs--~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS--QWTLQHEIQNVIDPPGK 167 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc--cchhhhhhhhccCCccc
Confidence 6211 23345566688999999995 6789999999999999876533221 1222222 235
Q ss_pred CCCCeEEEEEcCCC--CceEEEEeCC-----CcEEEEeCC----cceEEEEeecCCCCeEEEEEeCC----CCEEEEEeC
Q 002086 685 STRKITGFQFSPSN--PSEVLVTSAD-----SRIRILDGL----DIVHKFRGFRNTSSQISAAFNAD----GKYIISASE 749 (969)
Q Consensus 685 h~~~It~l~fspd~--~~~l~sgs~D-----g~I~IwD~~----~~~~~~~~~~~~~~V~sl~fspd----g~~LaSgs~ 749 (969)
+..+..|+.|+|.. ..+|++|+.+ +.++||... +....-+...+..+|+.++|.|+ -.+||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 67788999999742 3467777766 478888743 33444445578889999999995 257999999
Q ss_pred CCcEEEEEcCC
Q 002086 750 DSQVYVWKREE 760 (969)
Q Consensus 750 Dg~I~IWdl~t 760 (969)
|| |+||++..
T Consensus 248 Dg-v~I~~v~~ 257 (361)
T KOG2445|consen 248 DG-VRIFKVKV 257 (361)
T ss_pred Cc-EEEEEEee
Confidence 99 99999985
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.69 E-value=7.7e-16 Score=168.50 Aligned_cols=197 Identities=20% Similarity=0.293 Sum_probs=167.6
Q ss_pred cccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 434 ~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
++|||+...+.+.|++|+..|+++.++....|||+++..|-|.|..+.++.....+.
T Consensus 104 kiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~----------------------- 160 (673)
T KOG4378|consen 104 KIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT----------------------- 160 (673)
T ss_pred eehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee-----------------------
Confidence 467888878888999999999999999999999999999999999988765432111
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
.+....|.-+.|++ ..+|.+++.+|.|.+||+.....+..+
T Consensus 161 -------------------------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 161 -------------------------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred -------------------------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 11233456888998 567889999999999999988888766
Q ss_pred --ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 --AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 --~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.|..+...|+|+|.+..+|++.+.|..|.+||+........+....+...++|.++|.+|++|...|.|..||++..+
T Consensus 204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 799999999999988889999999999999999998888888888899999999999999999999999999999876
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
... .....|...|++++|-|.
T Consensus 284 ~Pv-------~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 284 APV-------AVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCc-------eEeeecccceeEEEeeec
Confidence 422 122678888999999885
No 162
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.3e-15 Score=174.63 Aligned_cols=232 Identities=17% Similarity=0.259 Sum_probs=185.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
|...|.+++.. +.+|++|+.+++|.+|.+..++.-.
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~------------------------------------------ 90 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDT------------------------------------------ 90 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccc------------------------------------------
Confidence 78888888875 5589999999999999987654321
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
.+.-.+-++.+++|+. +.+++.||.|-.|++-++......+.+ +|.++|.+|.|+| .+
T Consensus 91 -------------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~ 150 (933)
T KOG1274|consen 91 -------------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KG 150 (933)
T ss_pred -------------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CC
Confidence 2223456789999997 899999999999999999887776666 9999999999999 99
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEecC---------CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWTDL---------HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~~~---------~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++|++.+.||.|+|||+.++.+...... ...+..++|+|+|..|++.+.|+.|++|+..+........
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--- 227 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--- 227 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec---
Confidence 9999999999999999998866543321 2456789999999999999999999999999887653322
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
...+...+.+++|+|.| .+|++++.||.|.|||..+ ...|.....|.+++|.|++.-|-.-...|...+|
T Consensus 228 ---~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t----~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 228 ---DKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDT----HERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ---ccccccceEEEEEcCCC-cEEeeeccCCcEEEEeccc----chhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 23444559999999997 8999999999999999776 2225556678999999988766555445544444
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.68 E-value=4e-15 Score=155.98 Aligned_cols=249 Identities=19% Similarity=0.303 Sum_probs=177.1
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
..++.|+|||..|++-+.|..+++|++-..-.-.... +...
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~---------------------~~~~------------------ 92 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD---------------------GPLN------------------ 92 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCC---------------------Cccc------------------
Confidence 3478999999999999999999999985211100000 0000
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEec-------C-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCC---eEE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWS-------R-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDY---VTC 599 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-------~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~---V~s 599 (969)
....+. .-......|+..+|- | ..++++.+.+.-|++||.-+|+....+ .|... ..+
T Consensus 93 --------~~~~~~-~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhs 163 (406)
T KOG2919|consen 93 --------FSKHLS-YRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHS 163 (406)
T ss_pred --------ccccee-EEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhee
Confidence 000000 011133456777774 2 478999999999999999999988776 45554 468
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeC-CCce---EEEE-----ecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCc
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSI-SDRL---VVDW-----TDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl-~~~~---~~~~-----~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~ 669 (969)
++|+| ++.+|++|. ...|++||+ +.|. +... ++..+.|.+++|+|.. ..+++|+...++-||.-....
T Consensus 164 L~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~ 241 (406)
T KOG2919|consen 164 LQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR 241 (406)
T ss_pred EEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC
Confidence 99999 999998874 678999999 4442 2222 2335778999999965 589999999999999888777
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcceEE---EEeecC-CCCeEEEEEeCCCCEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDIVHK---FRGFRN-TSSQISAAFNADGKYI 744 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~~~~---~~~~~~-~~~V~sl~fspdg~~L 744 (969)
+.... .+|.+.|+.++|.++| ..|++|. .|-.|..||++..... +..+.. ...-+-....|++++|
T Consensus 242 pl~ll--------ggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 242 PLQLL--------GGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL 312 (406)
T ss_pred ceeee--------cccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCcee
Confidence 65443 6899999999999999 5666665 5778999998764332 222222 2222335567899999
Q ss_pred EEEeCCCcEEEEEcCCC
Q 002086 745 ISASEDSQVYVWKREEH 761 (969)
Q Consensus 745 aSgs~Dg~I~IWdl~t~ 761 (969)
++|+.||.|++||+++.
T Consensus 313 asG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDL 329 (406)
T ss_pred eccCCCccEEEEecCCC
Confidence 99999999999999973
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=161.57 Aligned_cols=257 Identities=21% Similarity=0.270 Sum_probs=186.8
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+.+.+|.+.|.+|.|+.++++||+||.|..++||.++..-.-
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-------------------------------------- 91 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-------------------------------------- 91 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh--------------------------------------
Confidence 447799999999999999999999999999999998742110
Q ss_pred CCCCCCCcccccceeeecCCCceeEe-ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC---CeEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSF-IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND---YVTC 599 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l-~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~---~V~s 599 (969)
...+|+... ..|...|.|++|.- +..|++|..+++|.+-|+.+.+.+.++.|.. .|+.
T Consensus 92 -----------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~ 154 (609)
T KOG4227|consen 92 -----------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYH 154 (609)
T ss_pred -----------------cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceee
Confidence 112333332 23668999999987 7899999999999999999999999998776 9999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
+..+| ..+.|++.+.++.|.+||.+..+ ++...........+.|+|.. .+|++.+..+-+.+||++........
T Consensus 155 m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~ 233 (609)
T KOG4227|consen 155 MDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ 233 (609)
T ss_pred cccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh
Confidence 99999 68999999999999999998754 44444555678899999965 57778999999999999865432111
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEEee------cCCCCeEEEEEeCCCCEEEEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFRGF------RNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~------~~~~~V~sl~fspdg~~LaSg 747 (969)
.............-.++.|+|.| ..+++--....-.+||... ...+++.- .+...+.+++|--|- .+++|
T Consensus 234 -~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tG 310 (609)
T KOG4227|consen 234 -RSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATG 310 (609)
T ss_pred -hhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeecc
Confidence 00000011112234678899998 4555444444445567443 23333322 223345677887554 49999
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.+-.|+||.+..
T Consensus 311 SD~~~i~~WklP~ 323 (609)
T KOG4227|consen 311 SDHWGIHIWKLPR 323 (609)
T ss_pred CcccceEEEecCC
Confidence 9999999999864
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.67 E-value=4.2e-15 Score=155.85 Aligned_cols=282 Identities=16% Similarity=0.205 Sum_probs=203.5
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCC-------c-------EEEEeecCCCeEEEEEec------CCCCEEEEEEC
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETK-------S-------CLKLFAHNDYVTCIQFNP------MDDDYFISGSL 615 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~-------~-------~i~~~~h~~~V~sv~fsp------~~~~~L~sgs~ 615 (969)
...+.|+| +..|++-+.|..+.+|++... . ....+.....|...+|-+ .+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45689999 899999999999999998521 1 111224566788888752 16689999999
Q ss_pred CCeEEEEeCCCceEEEEe---cCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEc-CCCceeeeeeeeecccccCCCCC
Q 002086 616 DAKVRIWSISDRLVVDWT---DLH---EMVTAACYTPDGQNALIGSHKGSCRLYSI-EDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 616 Dg~I~IWDl~~~~~~~~~---~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl-~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
+.-|++||.-+|++...+ .|. ....+++|+|||.+|++|. ...|++||+ +.+........ +...+.+..+-
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t-~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT-VTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh-hhcccccccce
Confidence 999999999999876433 233 3457899999999998876 679999999 55554333222 11223556788
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCCccCCC
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE-DSQVYVWKREEHRNASTG 767 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~-Dg~I~IWdl~t~~~~~t~ 767 (969)
|.+++|+|.....+++++....+-||.-......+..+.|.+.|+.+.|.+||+.|++|.. |-.|.+||++.-+
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----- 284 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----- 284 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-----
Confidence 9999999999889999999888777664444444455577888999999999999999886 7789999998721
Q ss_pred ceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCC-C
Q 002086 768 KRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKT-N 846 (969)
Q Consensus 768 k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s-~ 846 (969)
.+++.+.++.. +..+.+. --.-|.++|+++++.++.+..|..+. +
T Consensus 285 ~pv~~L~rhv~--------------------~TNQRI~--------------FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 285 DPVYALERHVG--------------------DTNQRIL--------------FDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred chhhhhhhhcc--------------------CccceEE--------------EecCCCCceeeccCCCccEEEEecCCCC
Confidence 12232322222 1122222 12357888999999999999998765 6
Q ss_pred ccccCCCCCCCCccccccCCCCCCccccCCCccc
Q 002086 847 KVERVPSPPEEELSLISHDPGISESFTSNSSSIR 880 (969)
Q Consensus 847 ~~~~~l~~pee~l~~is~hP~~~~~~~~s~~~~r 880 (969)
+....+......+.+++.||-++ |++.++...+
T Consensus 331 n~~sv~~~~sd~vNgvslnP~mp-ilatssGqr~ 363 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQRI 363 (406)
T ss_pred CcccccccccccccceecCcccc-eeeeccCcee
Confidence 65566667778899999999966 7766443333
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.66 E-value=2.2e-15 Score=158.34 Aligned_cols=207 Identities=18% Similarity=0.303 Sum_probs=159.2
Q ss_pred CCCCEEEEEecC-----CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 553 HLDDVLDLSWSR-----SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 553 H~~~I~~l~fs~-----~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
|....+.++|+- +.+|+.|+.-|.|+|.|+.++++...+ +|...|+.|.|+|...+++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 566677777763 468999999999999999999998877 99999999999997788999999999999999999
Q ss_pred ceEEEEe----cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--------------------eeeeecccc
Q 002086 627 RLVVDWT----DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL--------------------NQVDFQTKK 682 (969)
Q Consensus 627 ~~~~~~~----~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~--------------------~~~~~~~~~ 682 (969)
..++..+ +|.+.|.++.|+++|.+|++++.|..|++|++...+.... ..++.-...
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 9888755 4778999999999999999999999999999984332111 011111133
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE-------------EEeec-CCCCe--EEEEEeCCCCEEEE
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK-------------FRGFR-NTSSQ--ISAAFNADGKYIIS 746 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~-------------~~~~~-~~~~V--~sl~fspdg~~LaS 746 (969)
..|...|.|+.|-- .++++-+-++.|..|...+.... +..+. ....+ ...+|.|-++.||.
T Consensus 248 diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred ccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 55667777777764 58888899999999985321111 11111 11223 34566777899999
Q ss_pred EeCCCcEEEEEcCCCC
Q 002086 747 ASEDSQVYVWKREEHR 762 (969)
Q Consensus 747 gs~Dg~I~IWdl~t~~ 762 (969)
|...|.|++||++..+
T Consensus 325 gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNE 340 (385)
T ss_pred ccCCCcEEEEECCCCC
Confidence 9999999999999743
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=7.3e-15 Score=158.43 Aligned_cols=271 Identities=22% Similarity=0.359 Sum_probs=187.4
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
...+.+..|..|..+|+++.|+|+|.+||||+.+|.|.+|....-... . . +.
T Consensus 53 ~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~-------------~------d~------ 104 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---D-------------A------DT------ 104 (434)
T ss_pred eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---c-------------c------cc------
Confidence 345677889999999999999999999999999999999986530000 0 0 00
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
....+.........+.+|...|+.++|++ +.++++++.|.++++||+..|+.+..+ .|...
T Consensus 105 -----------------e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 105 -----------------EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred -----------------hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 00000011123346788999999999999 899999999999999999999999888 89999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec--------------------CC----CCEEEEEEccCCCEEE
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD--------------------LH----EMVTAACYTPDGQNAL 652 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~--------------------~~----~~V~sv~fspdg~~La 652 (969)
|..++|.| .++++++-+.|...+++++...+++.... |. .-...++|+|+|.+++
T Consensus 168 vqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 168 VQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred cceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 99999999 88999999999888888775543322111 11 1245678999999998
Q ss_pred EEeC----CCc-----EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC-------C---------CceEEEEeC
Q 002086 653 IGSH----KGS-----CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS-------N---------PSEVLVTSA 707 (969)
Q Consensus 653 sgs~----dg~-----I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd-------~---------~~~l~sgs~ 707 (969)
+... .+. .++|+-...+.. . ........+...+.|+|- . -..+++...
T Consensus 247 tPag~~~~g~~~~~n~tYvfsrk~l~rP-~------~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt 319 (434)
T KOG1009|consen 247 TPAGLFKVGGGVFRNTSYVFSRKDLKRP-A------ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT 319 (434)
T ss_pred cccceeeeCCceeeceeEeeccccccCc-e------eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence 7532 222 344433322110 0 111233344444444431 0 023444455
Q ss_pred CCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 708 DSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...|+|||.......+. ...|-..++.++|++||.+|+..+.||..-+--++..+
T Consensus 320 ~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 320 KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 67899999876443332 23466789999999999999999999998888777643
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=9.7e-13 Score=148.41 Aligned_cols=289 Identities=26% Similarity=0.431 Sum_probs=207.2
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce-EEEeecCCcc-Ccccccc-cCCCCCccCCCCCCCCCcccc
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE-VMSMSEGNLT-PIHPSLC-NSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~-~l~~~~~~~~-~v~~~~~-~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... .+..... .......
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 125 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI-------------- 125 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceE--------------
Confidence 467899999999999999999999999999999998876 4444333211 1111111 0000000
Q ss_pred cCCCCCCCCcccccceeeecC--CCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 523 KKGKHSSPDYVHVPETVFSLS--EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~--~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
............+|... ......+..|...|.++.|++ +..+++++. |+.+++|++..+..+..+ .|...|
T Consensus 126 ----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 126 ----LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred ----EeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 00000011123445544 366778899999999999999 668888885 999999999998877777 689999
Q ss_pred EEEEEecCCCC-EEEEEECCCeEEEEeCCCceEEE--EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 598 TCIQFNPMDDD-YFISGSLDAKVRIWSISDRLVVD--WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 598 ~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~~--~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
.+++|+| ++. .+++++.|+.|++||...+.... +..+.... ...|++++.++++++.++.+++|++...... ..
T Consensus 202 ~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~ 278 (466)
T COG2319 202 SSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-LR 278 (466)
T ss_pred EEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE-EE
Confidence 9999998 776 55566999999999998777665 45555554 3389999989999999999999999876651 11
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee--cCCCCeEEEEEeCCCCEEEEE-eCCC
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF--RNTSSQISAAFNADGKYIISA-SEDS 751 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~--~~~~~V~sl~fspdg~~LaSg-s~Dg 751 (969)
. . ..|...+.++.|.|++ ..+++++.|+.+.+|+........... .+...+..+.|.+++..++.+ ..|+
T Consensus 279 ~--~----~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 279 T--L----SGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred E--E----ecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCC
Confidence 0 1 4568899999999966 566668888889999866544333322 445568888884343566665 6889
Q ss_pred cEEEEEcCCCC
Q 002086 752 QVYVWKREEHR 762 (969)
Q Consensus 752 ~I~IWdl~t~~ 762 (969)
.+.+|++....
T Consensus 352 ~~~~~~~~~~~ 362 (466)
T COG2319 352 TIRLWDLRTGK 362 (466)
T ss_pred cEEeeecCCCc
Confidence 99999998753
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.65 E-value=5e-15 Score=158.81 Aligned_cols=203 Identities=17% Similarity=0.306 Sum_probs=161.2
Q ss_pred EeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE--------EEEeecCCCeEEEEEecCCCCEEEEEECCCe
Q 002086 549 SFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC--------LKLFAHNDYVTCIQFNPMDDDYFISGSLDAK 618 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~--------i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~ 618 (969)
.+.||+++|.+++|+| ++.|++||.|.+|.||.+..+.. ....+|...|--|+|+|...+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5679999999999999 78999999999999999875432 2334899999999999988899999999999
Q ss_pred EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC-CCeEEEEEcCC
Q 002086 619 VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST-RKITGFQFSPS 697 (969)
Q Consensus 619 I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~-~~It~l~fspd 697 (969)
|.+|++.+++.+..+.|.+.|++++|+.+|.+|++.+.|..|+|||.+.++.+... ..|. ..-..+.|-.+
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--------~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--------VAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--------ccccCCCcceeEEecc
Confidence 99999999987777779999999999999999999999999999999999876543 2332 23445567666
Q ss_pred CCceEEEE---eCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 698 NPSEVLVT---SADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 698 ~~~~l~sg---s~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
+ ..+.+| ..+.++-+||..+... .+........|.---|.+|...|..++ .|+.|+.|.+.+
T Consensus 228 g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 228 G-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred C-ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 6 333333 3567899999554332 233334455566667788888776554 599999999976
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=1.7e-14 Score=168.95 Aligned_cols=249 Identities=17% Similarity=0.213 Sum_probs=183.9
Q ss_pred cccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
-...|+|++|+| +..+||.|..+|.|.+||+..+.....
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------------------------------- 280 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------------------------------- 280 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC----------------------------------------
Confidence 467899999999 567889999999999999986543110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEE------EEe-------e
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCL------KLF-------A 592 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i------~~~-------~ 592 (969)
...-.....|..+++.+.|.. +.-|++++.||.|..|+++.-.+. ... .
T Consensus 281 ---------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~ 345 (555)
T KOG1587|consen 281 ---------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSS 345 (555)
T ss_pred ---------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccc
Confidence 000012346999999999976 456999999999999988753321 111 2
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeC---CCce------EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI---SDRL------VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl---~~~~------~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
-...++++.|.+.+.+.|+.|+.+|.|..=+. +... ......|.+.|+++.++|-+..++..+.|.+++||
T Consensus 346 ~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriW 425 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIW 425 (555)
T ss_pred cccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEec
Confidence 23578999999988899999999999987333 2222 22455677899999999988766665569999999
Q ss_pred EcC-CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc--eEEEEeecCCCCeEEEEEeCC
Q 002086 664 SIE-DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI--VHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 664 Dl~-~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~--~~~~~~~~~~~~V~sl~fspd 740 (969)
... ....... ...+...|++++|+|..+..++++..||.|.|||+... .............+.+.|+++
T Consensus 426 s~~~~~~Pl~~--------~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 426 SEDVIASPLLS--------LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN 497 (555)
T ss_pred cccCCCCcchh--------hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCC
Confidence 987 3332211 14455669999999999999999999999999996532 122222222445567788888
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 002086 741 GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|+.|++|...|.|++|++...
T Consensus 498 g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 498 GKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CcEEEEecCCCcEEEEEcCch
Confidence 999999999999999999763
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=1.1e-12 Score=148.04 Aligned_cols=254 Identities=28% Similarity=0.489 Sum_probs=193.5
Q ss_pred ccccc-ceeeeEecccccCEEEEEEeCCCCEEEEEeC-CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 436 KDLSA-LHLCQEIQAHEGSIWTIKFSLDARFLASAGE-DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 436 ~dl~~-~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~-DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
+++.. ......+.+|...|.+++|+|++.++++++. |+.+++|++..+..+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 191 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL--------------------------- 191 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceE---------------------------
Confidence 34444 6778889999999999999999999999986 999999998753332
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEE-E
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLK-L 590 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~-~ 590 (969)
..+.+|...|.+++|++ +. .+++++.|+.|++||...+..+. .
T Consensus 192 ----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~ 237 (466)
T COG2319 192 ----------------------------------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237 (466)
T ss_pred ----------------------------------EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee
Confidence 24556999999999998 54 55555999999999999888887 3
Q ss_pred e-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 591 F-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 591 ~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
+ .|...+ ...|++ ++.++++++.|+.+++|++..... .....|...+.++.|.|++..+++++.|+.+.+|++..
T Consensus 238 ~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 238 LSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315 (466)
T ss_pred cCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence 4 677775 448998 678899999999999999986553 33346678899999999888888898899999999887
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE-eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT-SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg-s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
........ ...|...+..+.| +.+...++.+ ..|+.+.+|+..... ..........+..+.+.+ ...++.
T Consensus 316 ~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~ 386 (466)
T COG2319 316 GKLLSSLT------LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVS 386 (466)
T ss_pred CceEEEee------ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCceEEEEEECC-CCCEEE
Confidence 76544332 2355667999999 4222345555 688999999976655 222222222278888988 544444
Q ss_pred -EeCCCcEEEEEcCCC
Q 002086 747 -ASEDSQVYVWKREEH 761 (969)
Q Consensus 747 -gs~Dg~I~IWdl~t~ 761 (969)
+..++.+.+|+....
T Consensus 387 ~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 387 SGSTDGTVRLWDLSTG 402 (466)
T ss_pred EecCCCceEEEecccC
Confidence 688999999999874
No 172
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.9e-15 Score=165.83 Aligned_cols=265 Identities=19% Similarity=0.301 Sum_probs=203.0
Q ss_pred cccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 438 LSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
++.+.+...|..|.|.|..|.|+..|..|+|||.|..|.+||+..+.....
T Consensus 129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------------------------- 179 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS----------------------------- 179 (559)
T ss_pred HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc-----------------------------
Confidence 445566677999999999999999999999999999999999987654332
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCC-CcEEE---E
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMET-KSCLK---L 590 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t-~~~i~---~ 590 (969)
-..||...|....|.| ...+++++.||.|++=.+.. +.+.. .
T Consensus 180 -------------------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 180 -------------------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred -------------------------------cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 1246777787777877 57899999999999987654 44432 3
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE----EEecCCC---CEEEEEEccCCC-EEEEEeCCCcEEE
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV----DWTDLHE---MVTAACYTPDGQ-NALIGSHKGSCRL 662 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~----~~~~~~~---~V~sv~fspdg~-~Lasgs~dg~I~I 662 (969)
..|.++|..++.-|.....|++++.|+.+.-+|++.+... ....... ....++..|... .+++|+.|..+++
T Consensus 229 ~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~Rv 308 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARV 308 (559)
T ss_pred ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhh
Confidence 3799999999999978889999999999999999876432 2222222 467889999765 7899999999999
Q ss_pred EEcCCCceeeee----eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--------------cc-eEEE
Q 002086 663 YSIEDSKLHQLN----QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL--------------DI-VHKF 723 (969)
Q Consensus 663 wDl~~~~~~~~~----~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--------------~~-~~~~ 723 (969)
||.+.-...... .+............|++++|+.++ ..++++..|-.|+++... .. .+.|
T Consensus 309 YD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 309 YDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred hcccchhhccccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 998864432111 111111122445679999999877 678888899999999611 11 2348
Q ss_pred EeecCCCCeEEEEE-eCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 724 RGFRNTSSQISAAF-NADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 724 ~~~~~~~~V~sl~f-spdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
++|.+...|..+-| -|...|+++|+.-|.|+||+-.+.+.
T Consensus 388 KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred cccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 88988888888866 57889999999999999999988544
No 173
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1.9e-15 Score=164.91 Aligned_cols=284 Identities=14% Similarity=0.144 Sum_probs=211.6
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~ 635 (969)
-+.+.|+. |.+|+.|+..|.|-.+|+.++++...+.-...|.++.|.. +.++|+++ ....++|||-..-++..+ ..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~GtElHCl-k~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDNNGTELHCL-KR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecCCCcEEeeh-hh
Confidence 35688887 8999999999999999999999999999999999999997 56666555 668899999766555444 44
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 636 HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
...|..+.|.|..-+|++++..|.++.-|+..++++... ....+.+..+.-+|-+ ..+-+|...|+|.+|.
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~--------~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI--------RTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWS 279 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHH--------HccCCccchhhcCCcc-ceEEEcCCCceEEecC
Confidence 566999999999999999999999999999999875443 4456778888899988 7899999999999999
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcc
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMV 795 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i 795 (969)
........+...|.++|.++++.++|+|+||.+.|..|+|||++.-..+.+-. . .+. .-.++++..++.
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~------t---p~~--a~~ls~SqkglL 348 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR------T---PHP--ASNLSLSQKGLL 348 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee------c---CCC--ccccccccccce
Confidence 77666666677789999999999999999999999999999999843222211 1 111 111222233333
Q ss_pred c-CCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCcccc
Q 002086 796 K-GEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTS 874 (969)
Q Consensus 796 ~-G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~ 874 (969)
+ |...-+.+|..... .|| .....|.-..-.+.++....+|.|++++|+|--||.++++|
T Consensus 349 A~~~G~~v~iw~d~~~-----------~s~---------~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVP 408 (545)
T KOG1272|consen 349 ALSYGDHVQIWKDALK-----------GSG---------HGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVP 408 (545)
T ss_pred eeecCCeeeeehhhhc-----------CCC---------CCCcchhhhccCcccccceeccHHHeeeccccCCceeEecc
Confidence 2 22233333311100 011 11222222333345666678999999999999999999999
Q ss_pred CCCccccCC
Q 002086 875 NSSSIRSGD 883 (969)
Q Consensus 875 s~~~~r~~~ 883 (969)
++.++++-.
T Consensus 409 GsGePN~Ds 417 (545)
T KOG1272|consen 409 GSGEPNYDS 417 (545)
T ss_pred CCCCCCcch
Confidence 999998665
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.60 E-value=8e-15 Score=150.16 Aligned_cols=249 Identities=16% Similarity=0.223 Sum_probs=171.2
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
...|++|.+.|+++.|-.+++ |.+|..-|.|++|++++...+..+.+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-------------------------------- 53 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-------------------------------- 53 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--------------------------------
Confidence 445779999999999998775 99999999999999987544332221
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-----------------
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS----------------- 586 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~----------------- 586 (969)
.|...|+.+...|+..|.+-+.|..+.+|++..+.
T Consensus 54 ----------------------------~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrf 105 (323)
T KOG0322|consen 54 ----------------------------FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRF 105 (323)
T ss_pred ----------------------------hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccc
Confidence 13333444444444444444444444444443211
Q ss_pred ------------------------------E--EEEe-----ecCCCeEEEEEecCCCC--EEEEEECCCeEEEEeCCCc
Q 002086 587 ------------------------------C--LKLF-----AHNDYVTCIQFNPMDDD--YFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 587 ------------------------------~--i~~~-----~h~~~V~sv~fsp~~~~--~L~sgs~Dg~I~IWDl~~~ 627 (969)
. +... +..+.+.|..+...++. ++++|.++|.|.+||+.++
T Consensus 106 Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 106 SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 1 1111 23455666665443333 5678889999999999986
Q ss_pred eE-----------EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 628 LV-----------VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 628 ~~-----------~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.. .....|..+|.++.|.+.-..=++|+.+..+..|++........ +........-.|..+.+-|
T Consensus 186 ~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq----~~~e~~lknpGv~gvrIRp 261 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ----IRKEITLKNPGVSGVRIRP 261 (323)
T ss_pred ceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc----ccceEEecCCCccceEEcc
Confidence 32 23345778899999998777778889999999998875422111 1111223345688889999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
|+ +.+++++.|+.||||.-++.........|...|++++|+||..++|.++.|++|-+|++
T Consensus 262 D~-KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 262 DG-KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CC-cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 98 89999999999999985554433333445688999999999999999999999999997
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.59 E-value=5.9e-14 Score=145.48 Aligned_cols=245 Identities=15% Similarity=0.230 Sum_probs=178.5
Q ss_pred ccccCEEEEEEeCCCC-----EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDAR-----FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~-----~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
.|.-+++.+-|.|+.. +|||++ ..+|||.+...+.....+. +..
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~---------~L~-------------------- 142 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQS---------VLN-------------------- 142 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhh---------hhc--------------------
Confidence 5999999999999763 778765 4699999874211100000 000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE----EEEeecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC----LKLFAHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~----i~~~~h~~~V 597 (969)
...-..+.++++++.|+. .++|.++|-|-+..|||++++.. .+.++|..+|
T Consensus 143 -----------------------~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 143 -----------------------NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred -----------------------cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 001123667999999997 68999999999999999999743 3455999999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceE---EEEecC-CCCEEEEEEccCC-CEEEE-EeCCCcEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLV---VDWTDL-HEMVTAACYTPDG-QNALI-GSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~~~-~~~V~sv~fspdg-~~Las-gs~dg~I~IwDl~~~~~~ 671 (969)
..|+|....-+.|++++.||.|++||++..+- +..-.. ..+...++|+++. +++|+ +-....|.|.|++....
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t- 278 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT- 278 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-
Confidence 99999975567999999999999999987542 222222 4678899999854 56665 44556899999986543
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-----EEEeecCCCCeEEEEEeC-CCCEEE
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-----KFRGFRNTSSQISAAFNA-DGKYII 745 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-----~~~~~~~~~~V~sl~fsp-dg~~La 745 (969)
......+|...|.+++|.|.....|++++.|..+.|||+.+... ....+...+.|..+.|++ .+..|+
T Consensus 279 ------pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 279 ------PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred ------ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEE
Confidence 22344889999999999999989999999999999999654332 122233566799999996 566777
Q ss_pred EEeCCCcEEE
Q 002086 746 SASEDSQVYV 755 (969)
Q Consensus 746 Sgs~Dg~I~I 755 (969)
.+.. ..+.|
T Consensus 353 i~~~-kklei 361 (364)
T KOG0290|consen 353 ICFG-KKLEI 361 (364)
T ss_pred EEec-CeeeE
Confidence 7763 34443
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.59 E-value=3.4e-14 Score=147.04 Aligned_cols=223 Identities=20% Similarity=0.270 Sum_probs=168.1
Q ss_pred cccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEE-EeecCCccCcccccccCCCCCccCCCCCC
Q 002086 438 LSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVM-SMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 438 l~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l-~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
..+++++..|. .|-+.|.|+.|.|++..||+-. |..|.+|+++.+..+ ..+..
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s------------------------ 163 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS------------------------ 163 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc------------------------
Confidence 34456666676 6778999999999999999886 888999999875442 11000
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe--
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-- 591 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-- 591 (969)
..-.+|....++-+|+| +..-+....|+++..||+++..+...+
T Consensus 164 --------------------------------s~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 164 --------------------------------SESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred --------------------------------cccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 00112566777888998 444445566899999999998888776
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCC
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~ 668 (969)
+|...|..+.|+|....+|++|+.||.|+|||.+..+ +..+.+|...|.++.|+|. .++|++|+.|..|.+|....-
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 7999999999999666789999999999999998753 5567788899999999995 467789999999999976532
Q ss_pred ceeeeeee---------------------eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 669 KLHQLNQV---------------------DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 669 ~~~~~~~~---------------------~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
...+.... ........|...|++++|+.-++-.+++-+.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 21110000 01123467889999999999998888899999999886543
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.59 E-value=2.4e-12 Score=145.26 Aligned_cols=270 Identities=17% Similarity=0.242 Sum_probs=189.4
Q ss_pred EEeeC---CCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCccccccccccc
Q 002086 293 LIKNL---DTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKS 369 (969)
Q Consensus 293 ~i~~l---d~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~ 369 (969)
+|.|+ -+|.+++++. |..+-++|...|.+ ++++.||.+.|++++...++.++++|+.|..+..|..+.
T Consensus 14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~l-----lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTL-----LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEec----CCEEEEEeCCCccc-----ccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 55554 3777877775 44577999999998 578899999999999999999999999999898887431
Q ss_pred ccccccccccccce-eeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEec
Q 002086 370 LRMSKRRGAALLKN-IKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ 448 (969)
Q Consensus 370 ~~~~k~~~~~~l~~-v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~ 448 (969)
.. .++. +..+..++.|.|-...+.+..+ .+-..|- ... +.++ -+
T Consensus 85 ---EG-----~LkYSH~D~IQCMsFNP~~h~LasCsL--------------sdFglWS----~~q--K~V~-------K~ 129 (1081)
T KOG1538|consen 85 ---EG-----ILKYSHNDAIQCMSFNPITHQLASCSL--------------SDFGLWS----PEQ--KSVS-------KH 129 (1081)
T ss_pred ---cc-----eeeeccCCeeeEeecCchHHHhhhcch--------------hhccccC----hhh--hhHH-------hh
Confidence 11 2222 2234444544444333333321 1111120 000 0110 01
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.-...|.+++|..||++|+-|-.||+|.|-+-...+.+..
T Consensus 130 kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I---------------------------------------- 169 (1081)
T KOG1538|consen 130 KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI---------------------------------------- 169 (1081)
T ss_pred hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE----------------------------------------
Confidence 1245688999999999999999999999886432221110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC------CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEE
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR------SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQF 602 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~------~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~f 602 (969)
..-.|.+.+|++++|+| ...+++.....++.++.+.....-+.-.-.-...|+.+
T Consensus 170 -------------------~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 170 -------------------ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISY 230 (1081)
T ss_pred -------------------eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhee
Confidence 12235678999999997 25788888888888888865433333344556678999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
.+ +|.+++.|+.|+.+.+|.-..-.+-..-....+|+.++..|++++++.|+.||+|..|++-
T Consensus 231 f~-NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 231 FT-NGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cc-CCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99 9999999999999999986654444455566889999999999999999999999998864
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.59 E-value=1.1e-12 Score=148.26 Aligned_cols=256 Identities=15% Similarity=0.230 Sum_probs=164.6
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAG-EDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs-~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.+++.+. +.+....|+++|++++|+.++ .++.|.+|++.. +++... .
T Consensus 26 ~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~-~----------------------------- 74 (330)
T PRK11028 26 TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA-A----------------------------- 74 (330)
T ss_pred eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe-e-----------------------------
Confidence 3445554 346677899999999886654 588899999862 322110 0
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCCC----cEEEEeec
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDMETK----SCLKLFAH 593 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t~----~~i~~~~h 593 (969)
.. ...+....+.|+| +++|++++ .++.|.+|++.+. +.+..+.+
T Consensus 75 -----------------------------~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~ 124 (330)
T PRK11028 75 -----------------------------ES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG 124 (330)
T ss_pred -----------------------------ee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC
Confidence 00 0112345789998 67777766 4899999999742 23333344
Q ss_pred CCCeEEEEEecCCCCEEEE-EECCCeEEEEeCCCceEEE-------EecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEE
Q 002086 594 NDYVTCIQFNPMDDDYFIS-GSLDAKVRIWSISDRLVVD-------WTDLHEMVTAACYTPDGQNALIGSH-KGSCRLYS 664 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~s-gs~Dg~I~IWDl~~~~~~~-------~~~~~~~V~sv~fspdg~~Lasgs~-dg~I~IwD 664 (969)
.....+++++| +++++++ ...++.|.+||+.+...+. ..........++|+|+|++++++.. ++.|.+|+
T Consensus 125 ~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 125 LEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred CCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence 45678889999 7877755 4556999999997632221 1122345678999999999988876 89999999
Q ss_pred cCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcc--eEEEEeec-CCCCeEEEEEe
Q 002086 665 IED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDI--VHKFRGFR-NTSSQISAAFN 738 (969)
Q Consensus 665 l~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~--~~~~~~~~-~~~~V~sl~fs 738 (969)
+.. ++......+........+......+.|+|++ .+++++. .++.|.+|+.... ...+..+. .......+.|+
T Consensus 204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~ 282 (330)
T PRK11028 204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNID 282 (330)
T ss_pred EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEEC
Confidence 974 3332222111110001122234468899998 5666664 5789999986321 22222221 11234578999
Q ss_pred CCCCEEEEEeC-CCcEEEEEcCC
Q 002086 739 ADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 739 pdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
|||++|++++. +++|.+|+++.
T Consensus 283 ~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 283 HSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCCEEEEEEccCCcEEEEEEcC
Confidence 99999998876 89999999864
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=8e-15 Score=175.50 Aligned_cols=211 Identities=18% Similarity=0.280 Sum_probs=169.8
Q ss_pred cceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
...++.++..|+|.|.+|.|++... +||+|+.||.|.|||+..-+.-... +
T Consensus 105 ~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~----------------------~------ 156 (1049)
T KOG0307|consen 105 SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP----------------------G------ 156 (1049)
T ss_pred chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC----------------------C------
Confidence 3456777889999999999999655 9999999999999999752210000 0
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEee-c--
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA-H-- 593 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h-- 593 (969)
-..-.+.|.+++|+. .+.|++++.+|.+.|||++..+.+..+. +
T Consensus 157 -------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 157 -------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred -------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC
Confidence 012457899999997 6899999999999999999987776663 2
Q ss_pred CCCeEEEEEecCCCCEEEEEECCC---eEEEEeCCCc--eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDA---KVRIWSISDR--LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg---~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~ 667 (969)
...+..|+|+|.....|++++.|. .|.+||++.- .+..+..|...|.++.|++.+ .++++++.|+.|.+|+..+
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 235889999996667888888764 4999999753 233445788999999999977 7888999999999999999
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
++.+... ......+..+.|+|.++..+++++.||.|-||.+.
T Consensus 286 gEvl~~~--------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 286 GEVLGEL--------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ceEeeec--------CCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 8875443 44678899999999999999999999999999854
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1e-14 Score=161.51 Aligned_cols=242 Identities=19% Similarity=0.357 Sum_probs=166.1
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.+.+-++|.||+|.|+||+|+.||.+|++|+.|-.+.|||.-..+++..
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------------------------------- 87 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------------------------------- 87 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee-------------------------------
Confidence 3556678999999999999999999999999999999999875554432
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc----------
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS---------- 586 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~---------- 586 (969)
.-.||...|.++.|.| +.++++|..|..|+++|+...+
T Consensus 88 -----------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~ 138 (758)
T KOG1310|consen 88 -----------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE 138 (758)
T ss_pred -----------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccc
Confidence 2358999999999998 6789999999999999998521
Q ss_pred EEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-----------EEecCCCCEEEEEEccCC-CEEEE
Q 002086 587 CLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-----------DWTDLHEMVTAACYTPDG-QNALI 653 (969)
Q Consensus 587 ~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-----------~~~~~~~~V~sv~fspdg-~~Las 653 (969)
....+ .|...|..|+..|...+.|.+++.||+|+-+|++..... .....--...|+.++|.. .+|++
T Consensus 139 ~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV 218 (758)
T KOG1310|consen 139 TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV 218 (758)
T ss_pred hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe
Confidence 22222 689999999999955589999999999999999863211 111112346789999965 57889
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE-EcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCe
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ-FSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQ 732 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~-fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V 732 (969)
|+.|-..++||.+......... .. ..........|+. |+|.. + ...+|.+.. ....+
T Consensus 219 GgsdpfarLYD~Rr~lks~~s~--~~-~~~~pp~~~~cv~yf~p~h---l--kn~~gn~~~--------------~~~~~ 276 (758)
T KOG1310|consen 219 GGSDPFARLYDRRRVLKSFRSD--GT-MNTCPPKDCRCVRYFSPGH---L--KNSQGNLDR--------------YITCC 276 (758)
T ss_pred cCCCchhhhhhhhhhccCCCCC--cc-ccCCCCcccchhheecCcc---c--cCccccccc--------------ceeee
Confidence 9999999999965322110000 00 0001111222222 33322 1 111221110 11225
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
+-+.|+|+|.-|+..-....|+++|+...+.
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 6788999997666655556899999988644
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.3e-13 Score=160.46 Aligned_cols=276 Identities=18% Similarity=0.264 Sum_probs=188.9
Q ss_pred cCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeC--CCCEEEEEeCCCcEEEEecccc-----eEEEeecCCc
Q 002086 421 VSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSL--DARFLASAGEDRVIHVWEVQEC-----EVMSMSEGNL 493 (969)
Q Consensus 421 ~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSp--Dg~~LaTgs~DgtVrIWDl~tg-----~~l~~~~~~~ 493 (969)
-..+.|+.+..++.+.-+.... .-...|+.|++-. |..+|++|+.||.||||+--.. +++....
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~--- 1155 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGA------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS--- 1155 (1387)
T ss_pred cceEEEEecccCceeccccCCC------CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec---
Confidence 3445556666555544333222 2345799999986 5569999999999999974311 1111000
Q ss_pred cCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe
Q 002086 494 TPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS 572 (969)
Q Consensus 494 ~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs 572 (969)
+ +.+ .+.+-.+.=.-+.|.. ..+|++++
T Consensus 1156 ------------------~-----------------------------Ls~----~~~~~r~~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1156 ------------------S-----------------------------LSD----QLPGARGTGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred ------------------c-----------------------------ccc----cCccCCCCCeeeehhhhCCeEEecC
Confidence 0 000 0011111114466776 56777777
Q ss_pred CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCCCC--EEEEEE
Q 002086 573 MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLHEM--VTAACY 644 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~~~--V~sv~f 644 (969)
.-..|+|||.....+..-+ +....|+++.-+-..++.|++|..||.|++||.+... +..+..|... |..+.+
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 7899999999998888766 5667788888776578999999999999999997643 3455666665 999999
Q ss_pred ccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEE
Q 002086 645 TPDGQN-ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHK 722 (969)
Q Consensus 645 spdg~~-Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~ 722 (969)
.+.|-. |++|+.+|.|++||++.........+... ....+..+++..+++. ..+++|+. +.|.||++.. ....
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~---~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH---WEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeec---cccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhcc
Confidence 997765 99999999999999998533222222110 1113359999999987 67888877 9999999542 1111
Q ss_pred EE---ee--cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 723 FR---GF--RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 723 ~~---~~--~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++ ++ ...+.+.+++|+|-.-+||+|+.|.+|.||....+
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 11 11 23356789999999999999999999999998764
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.57 E-value=1.2e-13 Score=142.92 Aligned_cols=255 Identities=18% Similarity=0.250 Sum_probs=182.0
Q ss_pred eEecccccCEEEEEEeC-CCCEEEEEeCC-------CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 445 QEIQAHEGSIWTIKFSL-DARFLASAGED-------RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSp-Dg~~LaTgs~D-------gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
..|..|.+.|+.|+-+| |.+.|+|+-.| -.+-||.+....... ..
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S---------------------------~~ 109 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS---------------------------NS 109 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc---------------------------cc
Confidence 45778999999999999 56678887543 235678765311000 00
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEec-cCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE-EEe--
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFI-GHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL-KLF-- 591 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~-gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i-~~~-- 591 (969)
..-..+..+. .+-+.|.|+.|.| +..+++- .|..|.+|++..+..+ ..+
T Consensus 110 -------------------------~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~s 163 (370)
T KOG1007|consen 110 -------------------------STLECVASLDTEAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLS 163 (370)
T ss_pred -------------------------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecc
Confidence 0001112232 3556899999999 4455544 4899999999987763 222
Q ss_pred ----ecCCCeEEEEEec-CCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCE-EEEEeCCCcEEEE
Q 002086 592 ----AHNDYVTCIQFNP-MDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQN-ALIGSHKGSCRLY 663 (969)
Q Consensus 592 ----~h~~~V~sv~fsp-~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~-Lasgs~dg~I~Iw 663 (969)
.+....++-+|+| .+++.+++. .|+++..||+++......+ .|...|..+.|+|+-++ |++|+.||.|+||
T Consensus 164 s~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 164 SESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW 242 (370)
T ss_pred cccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence 4677888999999 455666655 5899999999987644332 35677999999998764 6678999999999
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-----------------------ce
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-----------------------IV 720 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-----------------------~~ 720 (969)
|++..+.. .....+|...|.++.|+|.-.+++++++.|..|.+|-... ..
T Consensus 243 D~R~tk~p-------v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 243 DTRKTKFP-------VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred eccCCCcc-------ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 99976642 2334789999999999998889999999999999995110 00
Q ss_pred ------EEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 002086 721 ------HKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 721 ------~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t 760 (969)
.......|...|.+++|+. |--.+|+-+.||.+.|=++..
T Consensus 316 kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0112234677899999987 566788899999999877653
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.54 E-value=4.8e-14 Score=157.90 Aligned_cols=249 Identities=15% Similarity=0.220 Sum_probs=170.0
Q ss_pred cccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
....|+.+.|.| |...||.++.||.|+||.+..+.+-.
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e----------------------------------------- 664 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE----------------------------------------- 664 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-----------------------------------------
Confidence 346799999999 88899999999999999987543211
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
....|...+.+|...|+.+.|+| .+.|+++++|-+|+|||+.+++....+ +|++.|..++|+|
T Consensus 665 -------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp- 730 (1012)
T KOG1445|consen 665 -------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP- 730 (1012)
T ss_pred -------------ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-
Confidence 12234457889999999999999 799999999999999999998876555 9999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecC---CCCEEEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeee
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDL---HEMVTAACYTPDGQNALIGSHKG----SCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~---~~~V~sv~fspdg~~Lasgs~dg----~I~IwDl~~~~~~~~~~~~~ 678 (969)
++..+++.+.||+|++|..+.++.-...+. ...--.|.|.-+|+++++.+.|. .|.+||..+..........+
T Consensus 731 dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l 810 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL 810 (1012)
T ss_pred CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence 999999999999999999987653322221 12345678888999988876554 68888876544221111100
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
. -.-.+.--.+.+|...++++|-.|..|++|.+.. ....+..+.....-..++|.+..+.=+..- ..-+.
T Consensus 811 D-----vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K~~CdV~~V--Ef~~c 883 (1012)
T KOG1445|consen 811 D-----VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQKLKCDVMAV--EFQVC 883 (1012)
T ss_pred c-----ccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeecccccceeee--ehhhh
Confidence 0 0001111125566667888899999999998543 222233333333333556655433211111 12345
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|.+..
T Consensus 884 ~RL~~ 888 (1012)
T KOG1445|consen 884 WRLSD 888 (1012)
T ss_pred hhhcc
Confidence 66654
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.2e-13 Score=143.32 Aligned_cols=207 Identities=14% Similarity=0.201 Sum_probs=166.9
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC------CcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET------KSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t------~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
.+.+|.+.|.+|.|+. +++|++|+.|..+++|++.. .+++.+. .|...|.|++|.- .+.++++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 5679999999999998 89999999999999999853 4566666 4678999999998 77899999999999
Q ss_pred EEEeCCCceEEEEecCCC---CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 620 RIWSISDRLVVDWTDLHE---MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~~~~---~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.+-|+.+.+.+....+.. .|+.+..+|..+.|++.+.++.|.+||.+.......... ..........+.|+|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-----~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-----PANSGKNFYTAEFHP 204 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-----ecCCCccceeeeecC
Confidence 999999999888887775 899999999999999999999999999987652211111 134456778899999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceEEE---Eee---c-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVHKF---RGF---R-NTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~~~---~~~---~-~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..+.+|++.+..+.+-+||.+.....+ .++ . ....-+++.|+|.|..|++--....-.+||+.++
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 999999999999999999976533221 111 1 1222357889999999988877777788998873
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6.7e-13 Score=140.74 Aligned_cols=247 Identities=15% Similarity=0.196 Sum_probs=167.2
Q ss_pred CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecC
Q 002086 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS 543 (969)
Q Consensus 464 ~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 543 (969)
..+|++-..|.|+|||..+++.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~-------------------------------------------------------- 64 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE-------------------------------------------------------- 64 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh--------------------------------------------------------
Confidence 568888889999999999877655
Q ss_pred CCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEe---ecC-CCeEEEEEecCCCCEEEEEEC-
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLF---AHN-DYVTCIQFNPMDDDYFISGSL- 615 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~-~~V~sv~fsp~~~~~L~sgs~- 615 (969)
.+++|...+..+.|.. .+.+++|+.||+|++||++.......+ ++. .+..|++.+- .++.+++|..
T Consensus 65 -----~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~ 138 (376)
T KOG1188|consen 65 -----EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTEL 138 (376)
T ss_pred -----eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEecccc
Confidence 4555666666777754 578999999999999999987766555 343 4677777764 5666776643
Q ss_pred ---CCeEEEEeCCCceE-EE--EecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 616 ---DAKVRIWSISDRLV-VD--WTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 616 ---Dg~I~IWDl~~~~~-~~--~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
|-.|.+||++..+. +. ...|.+.|+++.|+|. .++|++|+.||.|.|||+........ ......+...
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa-----L~~viN~~sS 213 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA-----LLHVINHGSS 213 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh-----HHHhhcccce
Confidence 56799999998754 32 3457789999999995 56889999999999999976532110 1111456778
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec------------CCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR------------NTSSQISAAFNADGKYIISASE-DSQVYV 755 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~------------~~~~V~sl~fspdg~~LaSgs~-Dg~I~I 755 (969)
|.++.|...+-..|.+-+...+..+|+............ ...++.......++.+++.++. -+...+
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~ 293 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTI 293 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeE
Confidence 999999987756799999999999999654332221111 1122333222335555555555 566666
Q ss_pred EEcCCCCccCCCceeEEecccC
Q 002086 756 WKREEHRNASTGKRAIITTRNH 777 (969)
Q Consensus 756 Wdl~t~~~~~t~k~~~~~~~~~ 777 (969)
+-+.........+.+.++...+
T Consensus 294 ~~~~~~~s~~~~~~~a~l~g~~ 315 (376)
T KOG1188|consen 294 FPLVDTSSGSLLTEPAILQGGH 315 (376)
T ss_pred EEeeecccccccCccccccCCc
Confidence 6666433333334444444433
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1e-11 Score=145.89 Aligned_cols=254 Identities=20% Similarity=0.266 Sum_probs=182.9
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|.-.++|.++||.++++|+|..||.|.+|.--..+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-------------------------------------------- 238 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-------------------------------------------- 238 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc--------------------------------------------
Confidence 477789999999999999999999999999732100
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDD 607 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~ 607 (969)
........+.-|...|.++.|+. +.+|++|+..|-+.+|.+.+++....-.-.++|..+.++| ++
T Consensus 239 -------------~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds 304 (792)
T KOG1963|consen 239 -------------DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DS 304 (792)
T ss_pred -------------cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CC
Confidence 00111236778999999999998 9999999999999999999999333336789999999999 99
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEe------------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWT------------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~------------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
++.+....|..|.+....+....... ...+-.+.++++|.-+.++..+..|.|.+||+.+.......+
T Consensus 305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 305 DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 99999999999999988554332111 112346778888877777888888888888876544322111
Q ss_pred ee-----------------------------------------------------------ecc-cccCCCCCeEEEEEc
Q 002086 676 VD-----------------------------------------------------------FQT-KKKSSTRKITGFQFS 695 (969)
Q Consensus 676 ~~-----------------------------------------------------------~~~-~~~~h~~~It~l~fs 695 (969)
+. +.. -...|...+...+|.
T Consensus 385 v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~ 464 (792)
T KOG1963|consen 385 VCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFL 464 (792)
T ss_pred EEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEe
Confidence 10 000 013344444444444
Q ss_pred C-CCCceEEEEeCCCcEEEEeC------C----cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 696 P-SNPSEVLVTSADSRIRILDG------L----DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 696 p-d~~~~l~sgs~Dg~I~IwD~------~----~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+ ......++++.||.++||-. . ...+...+.-+..++++++|+.||..| +.+.|+.|.|||..+.
T Consensus 465 ~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 465 NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTK 540 (792)
T ss_pred cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCCh
Confidence 3 33237888999999999974 1 234445555577889999999999655 5556889999999983
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=5.8e-12 Score=135.05 Aligned_cols=236 Identities=14% Similarity=0.195 Sum_probs=177.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|..+.|..|...|..|+.|| .+++.....+...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~------------------------------------------- 40 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF------------------------------------------- 40 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-------------------------------------------
Confidence 45677888999999999999999 4788766422100
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCC--cEEEEECCCCcEEEEeecCCCeEEEEEecCCCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDK--TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~ 608 (969)
........|.-+-|+. .+++..+.+. .+++.+++.+..+..+.....|.+|.++. +
T Consensus 41 ------------------~~~~~~~~IvEmLFSS-SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~ 98 (391)
T KOG2110|consen 41 ------------------SKDTEGVSIVEMLFSS-SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR---K 98 (391)
T ss_pred ------------------cccCCCeEEEEeeccc-ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---c
Confidence 0000112334444553 5555555443 49999999999999888999999999964 6
Q ss_pred EEEEEECCCeEEEEeCCCceEEEEecCC----CCEEEEEEccCCCEEEEE--eCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 609 YFISGSLDAKVRIWSISDRLVVDWTDLH----EMVTAACYTPDGQNALIG--SHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~~~~~~~----~~V~sv~fspdg~~Lasg--s~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
.|+++-.+. |+|||+++.+++..+... ..+.++++++.+.+++.- ...|.|.|||+.+.+.....
T Consensus 99 RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I-------- 169 (391)
T KOG2110|consen 99 RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI-------- 169 (391)
T ss_pred eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE--------
Confidence 666666554 999999999988755433 446666666667788863 35789999999887755433
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCc-EEEEeCCcceEEEEeec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSR-IRILDGLDIVHKFRGFR--NTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~-I~IwD~~~~~~~~~~~~--~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
..|.+.+.+++|+++| .+|++++..|+ |||+.+.+....++... ....|.+++|+||+++|++.+..++|+||+++
T Consensus 170 ~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 6899999999999999 89999999997 79999876665554433 24567899999999999999999999999998
Q ss_pred CCC
Q 002086 760 EHR 762 (969)
Q Consensus 760 t~~ 762 (969)
...
T Consensus 249 ~~~ 251 (391)
T KOG2110|consen 249 KVS 251 (391)
T ss_pred ccc
Confidence 743
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.52 E-value=4.5e-13 Score=139.03 Aligned_cols=245 Identities=14% Similarity=0.261 Sum_probs=176.1
Q ss_pred EEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCc--ccccccceeeeEecccccCEEEEEEeC-CCCE
Q 002086 389 HSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKS--YKDLSALHLCQEIQAHEGSIWTIKFSL-DARF 465 (969)
Q Consensus 389 ~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~--l~dl~~~~l~~~L~gH~~~I~~l~fSp-Dg~~ 465 (969)
..+.|.|+....++. ++ .....++++|..+.. -..++..--...-..|..++++..|+. |-++
T Consensus 100 tK~~wiPd~~g~~pd-lL-------------ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPD-LL-------------ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred cceEecCCccccCcc-hh-------------hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence 334456677666663 22 233445666666532 112221111122345778999999997 7789
Q ss_pred EEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCC
Q 002086 466 LASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEK 545 (969)
Q Consensus 466 LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k 545 (969)
|.|+|-|-+..|||++++.. +.
T Consensus 166 igtSSiDTTCTiWdie~~~~----------------------------------------------------------~~ 187 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVS----------------------------------------------------------GT 187 (364)
T ss_pred eEeecccCeEEEEEEeeccc----------------------------------------------------------cc
Confidence 99999999999999987521 00
Q ss_pred ceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe---e-cCCCeEEEEEecCCCCEEEEEECC-Ce
Q 002086 546 PFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF---A-HNDYVTCIQFNPMDDDYFISGSLD-AK 618 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~-h~~~V~sv~fsp~~~~~L~sgs~D-g~ 618 (969)
....|..|..+|++|+|.. -+.|++.+.||.||+||++..+.-.++ . ...+..-++|++.+.+++++-..| ..
T Consensus 188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK 267 (364)
T ss_pred eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence 1125778999999999998 589999999999999999987765554 2 267889999999888899886665 56
Q ss_pred EEEEeCCCc--eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 619 VRIWSISDR--LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 619 I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
|.|.|++.. .+..+..|...|+.++|.|.. ..|++++.|..+.|||+...-..... -..........|..++|+
T Consensus 268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~---dPilay~a~~EVNqi~Ws 344 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE---DPILAYTAGGEVNQIQWS 344 (364)
T ss_pred EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC---Cchhhhhccceeeeeeec
Confidence 999999874 466788899999999999964 68889999999999999764321111 011112357789999999
Q ss_pred CCCCceEEEEeCC
Q 002086 696 PSNPSEVLVTSAD 708 (969)
Q Consensus 696 pd~~~~l~sgs~D 708 (969)
+..+..++++...
T Consensus 345 ~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 345 SSQPDWIAICFGK 357 (364)
T ss_pred ccCCCEEEEEecC
Confidence 9887788777543
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.1e-12 Score=151.53 Aligned_cols=315 Identities=14% Similarity=0.188 Sum_probs=210.1
Q ss_pred cccccccceeeeEecccccCEEEEEEeCCC---CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccc-cCCC-CCc
Q 002086 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDA---RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLC-NSSD-KAS 508 (969)
Q Consensus 434 ~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg---~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~-~~~~-~~~ 508 (969)
.++...++.++..|.+|..+++.+.+.|.. .++++++.||+|++||...+++++.+............ .... ...
T Consensus 40 ~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~ 119 (792)
T KOG1963|consen 40 KVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISAN 119 (792)
T ss_pred EEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccce
Confidence 445667778888999999999999999854 47889999999999999999999987655443322221 0000 000
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCL 588 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i 588 (969)
...+........ ............. .+-.........+..|.. -.+|.+++...+.....+..+.+|++.++...
T Consensus 120 ~~~s~~~~~~~~-~~s~~~~~q~~~~---~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~ 194 (792)
T KOG1963|consen 120 VYVSVEDYSILT-TFSKKLSKQSSRF---VLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH 194 (792)
T ss_pred eEeecccceeee-ecccccccceeee---EeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEeccccee
Confidence 000000000000 0000000000000 000011111122333433 35677787666666666778999999886521
Q ss_pred E-----EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-----ceEEEEecCCCCEEEEEEccCCCEEEEEeCCC
Q 002086 589 K-----LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-----RLVVDWTDLHEMVTAACYTPDGQNALIGSHKG 658 (969)
Q Consensus 589 ~-----~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-----~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg 658 (969)
. ...|...++|.+++| +++++++|..||.|.+|.--. .....+.-|...|++++|+++|.+|++|+..|
T Consensus 195 ~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred eccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce
Confidence 1 115788899999999 999999999999999996433 23445556888999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEEee---------c
Q 002086 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFRGF---------R 727 (969)
Q Consensus 659 ~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~---------~ 727 (969)
.+.+|.+.+++.... ..-..+|..+.++||+ ...++...|..|.+....+.. ....+. .
T Consensus 274 VLv~Wq~~T~~kqfL---------PRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 274 VLVLWQLETGKKQFL---------PRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred EEEEEeecCCCcccc---------cccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence 999999999873222 4457899999999998 788888889999998743221 111111 1
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 728 NTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
...-.+.++++|--+.++-.+..|.|.+||+-+.+.+
T Consensus 344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred ccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 1233567889997778888899999999999875544
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=1.5e-12 Score=156.20 Aligned_cols=262 Identities=13% Similarity=0.199 Sum_probs=183.3
Q ss_pred cceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.+.++..|..|...|..++.+++. .+|+|||.||+||||+...-..-. .
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~------------------------ 1086 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------G------------------------ 1086 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------c------------------------
Confidence 367888999999999999999865 899999999999999986421100 0
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE-------EE
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL-------KL 590 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i-------~~ 590 (969)
..+...++.-....+.++.+.+ ++.++.++.||.|++.++...... ..
T Consensus 1087 ------------------------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri 1142 (1431)
T KOG1240|consen 1087 ------------------------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRI 1142 (1431)
T ss_pred ------------------------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeec
Confidence 0011123333567888999888 899999999999999999862211 11
Q ss_pred e--ecCCC-eEEEEEecCCCC-EEEEEECCCeEEEEeCCCceEEE---EecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 591 F--AHNDY-VTCIQFNPMDDD-YFISGSLDAKVRIWSISDRLVVD---WTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 591 ~--~h~~~-V~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~~---~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
. ...+. |..-+|...... .++.+...+.|..||+++..... ....++.|++++.+|.+.++++|+..|.+.+|
T Consensus 1143 ~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1143 PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred ccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEE
Confidence 1 12233 344455443444 77788888999999998865443 33345789999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC--ceEEEEe--CCCcEEEEeCCcceEEEEeecC-----------
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP--SEVLVTS--ADSRIRILDGLDIVHKFRGFRN----------- 728 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~--~~l~sgs--~Dg~I~IwD~~~~~~~~~~~~~----------- 728 (969)
|++-+....... ..+..+|..+..+|..+ ...++++ ..+.|.+|+..+..+.......
T Consensus 1223 DLRF~~~i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~P 1295 (1431)
T KOG1240|consen 1223 DLRFRVPILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALP 1295 (1431)
T ss_pred EeecCceeeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcc
Confidence 999776544332 34557777777776544 4555543 5778999996654333222111
Q ss_pred --------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 729 --------TSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 729 --------~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
......+++..-+.++++|+.|+.|+.||...++
T Consensus 1296 s~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1296 SNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 1122344555567799999999999999998754
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.51 E-value=3.5e-13 Score=149.13 Aligned_cols=191 Identities=16% Similarity=0.301 Sum_probs=147.8
Q ss_pred CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEE
Q 002086 543 SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRI 621 (969)
Q Consensus 543 ~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~I 621 (969)
.++....+..|.+.|.+-.|++ |.-|++++.||.|++|.-...-.-.......+|.|++|.|...+.+++.+ +.+.|
T Consensus 93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~I 170 (737)
T KOG1524|consen 93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISI 170 (737)
T ss_pred cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEE
Confidence 4444556788999999999999 88999999999999998653322223367889999999995455555543 45666
Q ss_pred EeCCC-ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 622 WSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 622 WDl~~-~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
=.+.. .+++.+..|.+-|.++.|++..+.+++|++|-..+|||-....+.. ...|..+|++++|.|+ .
T Consensus 171 KpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~---------S~~~ey~ITSva~npd--~ 239 (737)
T KOG1524|consen 171 KPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT---------SAAEEYAITSVAFNPE--K 239 (737)
T ss_pred eecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc---------CChhccceeeeeeccc--c
Confidence 66654 4688999999999999999999999999999999999987654422 2678999999999998 4
Q ss_pred eEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 701 EVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.+++++.+ ++| +. ....+.|..++||+||..+++|+..|.+.+=-+
T Consensus 240 ~~~v~S~n-t~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 240 DYLLWSYN-TAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ceeeeeee-eee----------ec-CCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 56665532 233 11 235678999999999999999999998765433
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.50 E-value=1.4e-12 Score=152.89 Aligned_cols=207 Identities=14% Similarity=0.167 Sum_probs=154.6
Q ss_pred CCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE--E-----EEeecCCCeEEEEEecCCCC--EEEEEECCCeEEE
Q 002086 553 HLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC--L-----KLFAHNDYVTCIQFNPMDDD--YFISGSLDAKVRI 621 (969)
Q Consensus 553 H~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~--i-----~~~~h~~~V~sv~fsp~~~~--~L~sgs~Dg~I~I 621 (969)
-...|.|+.|+| .++++.|+.+|.|.+||+..+.. . ....|..+|+.+.|.. +.. -|++++.||.|..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICS 319 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEee
Confidence 457899999999 68999999999999999987665 2 2227999999999987 443 4999999999999
Q ss_pred EeCCCceE------EEEe-------cCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 622 WSISDRLV------VDWT-------DLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 622 WDl~~~~~------~~~~-------~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
|+++.-.. .... .....++++.|.+. -..|++|+..|.|.--+-...................|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98865321 1111 22245899999984 4678999999998874444333222111122233467899
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCC
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADG-KYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+|+.+.++|-....+++++ |.+++||... .....+....+...+++++|||-. ..|+++..||.|.|||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999999866666666 9999999966 555555555666779999999965 57788888999999999864
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.9e-12 Score=150.39 Aligned_cols=247 Identities=18% Similarity=0.217 Sum_probs=174.4
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+..++-..+.|+|=...++++...-.|+|||.+.++.+..+....
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----------------------------------- 1106 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA----------------------------------- 1106 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-----------------------------------
Confidence 334466778899988889999877889999999888765332110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEEC-CC----CcEEEEe--------e
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDM-ET----KSCLKLF--------A 592 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl-~t----~~~i~~~--------~ 592 (969)
.....|+.+.+-. ..++++|+.||.|+||+- .. .+.+..+ +
T Consensus 1107 -----------------------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~ 1163 (1387)
T KOG1517|consen 1107 -----------------------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPG 1163 (1387)
T ss_pred -----------------------CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCcc
Confidence 1234577777765 478999999999999963 22 2333322 1
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC--CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL--HEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~--~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
-.+.-.-+.|.. ...+|+++|.-..|+|||.....++.-... ...|+++.-+- .|+.|++|..||.|++||.+...
T Consensus 1164 ~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1164 ARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP 1242 (1387)
T ss_pred CCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC
Confidence 112224567877 555666666678999999998877765443 34566665443 47999999999999999998754
Q ss_pred eeeeeeeeecccccCCCCC--eEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEE-Ee--ec-CCCCeEEEEEeCCCC
Q 002086 670 LHQLNQVDFQTKKKSSTRK--ITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKF-RG--FR-NTSSQISAAFNADGK 742 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~--It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~-~~--~~-~~~~V~sl~fspdg~ 742 (969)
.... ....+.|... |..+.+.+.|-..|++|+.||.|++||++. ....+ .. +. .....+++..+++..
T Consensus 1243 ~ds~-----v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1243 PDSL-----VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP 1317 (1387)
T ss_pred cccc-----ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC
Confidence 4211 1112445555 999999998866899999999999999775 22211 11 11 123589999999999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 002086 743 YIISASEDSQVYVWKREE 760 (969)
Q Consensus 743 ~LaSgs~Dg~I~IWdl~t 760 (969)
.+|+|+. +.|+||++..
T Consensus 1318 iiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred eeeecCc-ceEEEEecCh
Confidence 9999998 9999999985
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=4e-13 Score=150.39 Aligned_cols=221 Identities=17% Similarity=0.188 Sum_probs=159.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+.+.+|++|.++|.|+++.+.+.++.+||.||+|+.|++-...- .+.. .
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds---------------------~------- 383 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD--PDDS---------------------Y------- 383 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC--cccc---------------------c-------
Confidence 456778999999999999999999999999999999998751100 0000 0
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~ 596 (969)
-.......+.||++.|+.++++. ...|++++.||+|++|+...... .+| ...+.
T Consensus 384 ---------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 384 ---------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred ---------------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 00011226889999999999998 78899999999999999987776 444 23445
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC--------CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL--------HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~--------~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
-.++.|-.......++...-+.--++++....-+.++.. ...+..+.++|.+.+.+++..|+.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 567777541222333333333333344443333332221 134778899999999999999999999999998
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
++.... ..|...++++++.|.+ -+|++++.|+.+++|......+.
T Consensus 522 ~~l~s~--------~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 KILHSM--------VAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ccchhe--------eeccceecceeecCCC-ceEEeecCCceeehhhccchhee
Confidence 865432 6788899999999988 79999999999999986544433
No 195
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.3e-12 Score=146.12 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=192.3
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
+..++++.|. |...-+.|..+|||+|| |||-.--.|++||+....+-..-......+........ .+..
T Consensus 40 ~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD-------~SK~-- 109 (703)
T KOG2321|consen 40 QRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDD-------YSKS-- 109 (703)
T ss_pred HHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccc-------hhhh--
Confidence 3345555554 88999999999999965 66777889999999865443211111111111111000 0000
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEecc----C-C----CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIG----H-L----DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC 587 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~g----H-~----~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~ 587 (969)
++ +.......|.. | . ..-.+++++. ..-|+.++....|+-+++..|..
T Consensus 110 ---------------------v~-L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf 167 (703)
T KOG2321|consen 110 ---------------------VF-LQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF 167 (703)
T ss_pred ---------------------eE-eecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc
Confidence 00 00000001110 0 0 1123566664 55566666667899999999999
Q ss_pred EEEeec-CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------------CCEEEEEEccCCCEEEEE
Q 002086 588 LKLFAH-NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------------EMVTAACYTPDGQNALIG 654 (969)
Q Consensus 588 i~~~~h-~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------------~~V~sv~fspdg~~Lasg 654 (969)
+..+.. .+.+++|..++ ...+|++|+.+|.|-.||.++...+...... ..|+++.|+.+|-.+++|
T Consensus 168 L~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVG 246 (703)
T KOG2321|consen 168 LNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVG 246 (703)
T ss_pred ccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEee
Confidence 998854 48999999999 8889999999999999999987655433322 239999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEE
Q 002086 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQIS 734 (969)
Q Consensus 655 s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~s 734 (969)
+.+|.+.|||++..+.... +......+|..+.|.+.+.+-.++......++|||-..... +........+..
T Consensus 247 ts~G~v~iyDLRa~~pl~~-------kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~-~asiEpt~~lND 318 (703)
T KOG2321|consen 247 TSTGSVLIYDLRASKPLLV-------KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP-MASIEPTSDLND 318 (703)
T ss_pred ccCCcEEEEEcccCCceee-------cccCCccceeeecccccCCCceEEecchHHhhhcccccCCc-eeeccccCCcCc
Confidence 9999999999999876533 22456778999999887655566666677899999554333 223344556889
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+|+-|++.+++++-+++.+..|=+..
T Consensus 319 ~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 319 FCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eeeecCCceEEEecCCCcceeEEccc
Confidence 99999999999999999888887765
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.9e-13 Score=145.59 Aligned_cols=190 Identities=23% Similarity=0.348 Sum_probs=146.6
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccc
Q 002086 455 WTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVH 534 (969)
Q Consensus 455 ~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (969)
.+++|+.+|..|+||+.||++|||++.....+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~------------------------------------------------ 179 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI------------------------------------------------ 179 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh------------------------------------------------
Confidence 78999999999999999999999997643322
Q ss_pred ccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCC---
Q 002086 535 VPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDD--- 607 (969)
Q Consensus 535 ~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~--- 607 (969)
.....|.+.|.++.|+| ++.|++-+.| ..+||+++++.++... ........+.|+. ++
T Consensus 180 -------------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~ 244 (398)
T KOG0771|consen 180 -------------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQE 244 (398)
T ss_pred -------------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCc
Confidence 13456999999999999 7799999999 9999999999777655 3344566777876 44
Q ss_pred CEEEE--EECCCeEEEEeCCCc------eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 608 DYFIS--GSLDAKVRIWSISDR------LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 608 ~~L~s--gs~Dg~I~IWDl~~~------~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
.+++. ...-+.|+.||+..- +..+.......|++++.+++|++++.|+.+|.|.||+..+.+..+..
T Consensus 245 ~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v----- 319 (398)
T KOG0771|consen 245 TLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV----- 319 (398)
T ss_pred eEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee-----
Confidence 33332 233455777665321 22233344567999999999999999999999999999887764432
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
...|...|+.+.|+|+. ++++..+.+.++.+..
T Consensus 320 --k~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 320 --KEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTK 352 (398)
T ss_pred --hhhheeeeeeEEEcCCc-CcccccccCCceeEEE
Confidence 37899999999999987 7888888888877765
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.47 E-value=8e-13 Score=146.32 Aligned_cols=188 Identities=16% Similarity=0.339 Sum_probs=146.9
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
..+.-+.+.+|.++|.|-.|+|||.-|+|+|+||.|++|.-.. -+
T Consensus 93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-ML---------------------------------- 137 (737)
T KOG1524|consen 93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-ML---------------------------------- 137 (737)
T ss_pred cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hH----------------------------------
Confidence 3445566889999999999999999999999999999998532 10
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc-EEEEeecCCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS-CLKLFAHNDY 596 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~-~i~~~~h~~~ 596 (969)
..++.....+|+|++|.| ++.+++. .+.+.|=-+.... .++--.|.+-
T Consensus 138 ---------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGi 188 (737)
T KOG1524|consen 138 ---------------------------RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGL 188 (737)
T ss_pred ---------------------------HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeecccccceeEEeccCcE
Confidence 002333567899999999 3344433 3556666655443 4444589999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
|.++.|++ ..+++++|+.|-..+|||.....+.....|..+|++++|.|+ +.+++++.+ ++++
T Consensus 189 iL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~-------------- 251 (737)
T KOG1524|consen 189 VLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF-------------- 251 (737)
T ss_pred EEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee-eeee--------------
Confidence 99999999 899999999999999999998888888889999999999999 777777643 3331
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
.+...+.|..++|++|| ..+++|+..|.+.+-
T Consensus 252 -----~~p~~GSifnlsWS~DG-TQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 252 -----SSPRVGSIFNLSWSADG-TQATCGTSTGQLIVA 283 (737)
T ss_pred -----cCCCccceEEEEEcCCC-ceeeccccCceEEEe
Confidence 14557789999999999 789999999987663
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.6e-12 Score=138.15 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=153.4
Q ss_pred EEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec-
Q 002086 558 LDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD- 634 (969)
Q Consensus 558 ~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~- 634 (969)
.+++|+. +..|++|+.||++|||++.....+... .|...|.++.|+| ++.+|++.+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899998 799999999999999998776665544 8999999999999 99999999999 89999999996655444
Q ss_pred --CCCCEEEEEEccCC---CE--EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 635 --LHEMVTAACYTPDG---QN--ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 635 --~~~~V~sv~fspdg---~~--Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.......+.|+.++ .+ ++....-+.|+.|++......... ...+.......|++++.+++| .+++.|+.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l---~~~~~~~~~~siSsl~VS~dG-kf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL---RLRKKIKRFKSISSLAVSDDG-KFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc---chhhhhhccCcceeEEEcCCC-cEEEEecc
Confidence 23446778888776 32 233445567787777543321110 111113345689999999998 89999999
Q ss_pred CCcEEEEeCCcceEEE-EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 708 DSRIRILDGLDIVHKF-RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
||.|-|++..+....+ ....|...|+.+.|+||.+++++-+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999987765544 3456778999999999999999999999999988865
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.46 E-value=5e-12 Score=133.19 Aligned_cols=252 Identities=17% Similarity=0.276 Sum_probs=184.4
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+.--..+|+|.+|++|+..+|.+-....|.||.....+.
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~----------------------------------------- 44 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----------------------------------------- 44 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------------------------
Confidence 333467999999999999999999999999998764331
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC-c---EEEEeecCCCeEEEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK-S---CLKLFAHNDYVTCIQ 601 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~-~---~i~~~~h~~~V~sv~ 601 (969)
.++..++..|...|++|+|.| .+.|++++.|..-++|....+ + .+.++.++..+++|.
T Consensus 45 -----------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~ 107 (361)
T KOG1523|consen 45 -----------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVK 107 (361)
T ss_pred -----------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEe
Confidence 233457888999999999999 789999999999999999443 3 233458999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEE-----EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee----
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVV-----DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ---- 672 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-----~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~---- 672 (969)
|+| .++.|++|+.-..|.||-++...-- ....+...|+++.|+|++-+|++|+.|+.++||..--.....
T Consensus 108 WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap 186 (361)
T KOG1523|consen 108 WSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAP 186 (361)
T ss_pred ecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCC
Confidence 999 9999999999999999988765422 223345679999999999999999999999999753211100
Q ss_pred ---eeeee---ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-EEEeecCCCCeEEEEEeCCCCEEE
Q 002086 673 ---LNQVD---FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-KFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 673 ---~~~~~---~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-~~~~~~~~~~V~sl~fspdg~~La 745 (969)
-..++ +..+.....+.+..+.|+|+| ..|+-.+.|.++.+-|...... .........+..++.|-.+. .++
T Consensus 187 ~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv 264 (361)
T KOG1523|consen 187 TPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVV 264 (361)
T ss_pred CCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-cee
Confidence 00000 111223567889999999998 7899999999999999554321 11111222556677776543 456
Q ss_pred EEeCCCcEEEEEcC
Q 002086 746 SASEDSQVYVWKRE 759 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~ 759 (969)
.++.|..=.++...
T Consensus 265 ~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 265 AAGYDCGPVLFVTD 278 (361)
T ss_pred ecCCCCCceEEEec
Confidence 66666544444443
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.8e-11 Score=124.34 Aligned_cols=247 Identities=11% Similarity=0.128 Sum_probs=174.6
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|++-+++|.+++|+.|..+|+|-+..+.....- +.
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~--------------------------sa---------------- 47 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG--------------------------SA---------------- 47 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc--------------------------cc----------------
Confidence 456778899999999999999999999988641100 00
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcE-------EEEe--ec-----CCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSC-------LKLF--AH-----NDY 596 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~-------i~~~--~h-----~~~ 596 (969)
......++..+++|.++|+.++|. +.+|++|+. |.|+-|..+.... .... .| -..
T Consensus 48 ---------~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPe 116 (325)
T KOG0649|consen 48 ---------EPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPE 116 (325)
T ss_pred ---------CCCCCcceeeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCc
Confidence 001123344568999999999999 466776665 9999998765332 1111 12 246
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
|+++-..| ..+-++.++.|+.++.||+++|++.. +.+|.+.|.++.--.....+++|++||+++|||+++.+......
T Consensus 117 INam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 117 INAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred cceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 89999999 55666666689999999999998765 56788999999986666789999999999999999998876543
Q ss_pred eeeccc-ccC-CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 676 VDFQTK-KKS-STRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 676 ~~~~~~-~~~-h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
...... .+. -...|-+++.+.+ +++ ++..-.+.+|.++. ..+.+.. ...+..+.|.. ..+++++..+
T Consensus 196 ~yk~~~~lRp~~g~wigala~~ed---Wlv-CGgGp~lslwhLrsse~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~ 266 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAVNED---WLV-CGGGPKLSLWHLRSSESTCVFPI---PARVHLVDFVD--DCVLIGGEGN 266 (325)
T ss_pred cccChhhcCcccCceeEEEeccCc---eEE-ecCCCceeEEeccCCCceEEEec---ccceeEeeeec--ceEEEecccc
Confidence 321111 122 3455777877652 444 45566789999764 3344433 34566777854 4788888888
Q ss_pred cEEEEEcCC
Q 002086 752 QVYVWKREE 760 (969)
Q Consensus 752 ~I~IWdl~t 760 (969)
.|.-|.+..
T Consensus 267 ~v~~~~l~G 275 (325)
T KOG0649|consen 267 HVQSYTLNG 275 (325)
T ss_pred ceeeeeecc
Confidence 999999874
No 201
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.43 E-value=4.6e-12 Score=137.03 Aligned_cols=166 Identities=24% Similarity=0.401 Sum_probs=133.1
Q ss_pred ccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 451 EGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 451 ~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
..+|..+.|.++.. .|||||.|..|+||.+..++.-.. .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------------------~---------------- 52 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------------------D---------------- 52 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------------------c----------------
Confidence 45799999998766 999999999999999875432110 0
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC--------C-----Cc---EEEEe-
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME--------T-----KS---CLKLF- 591 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~--------t-----~~---~i~~~- 591 (969)
..-+.+..|..|...|+++.|+| +++|++|+.+|.|.+|-.. + .+ ..+..
T Consensus 53 ------------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr 120 (434)
T KOG1009|consen 53 ------------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR 120 (434)
T ss_pred ------------eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec
Confidence 00012236788999999999999 8999999999999999776 3 11 11222
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
+|...|..++|+| +++++++++.|..+++||+..+++.... .|...+..++|.|-++++++-+.|...+++.+...+
T Consensus 121 ~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 121 GHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 7999999999999 9999999999999999999999887655 566889999999999999999888877777665443
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=1e-10 Score=125.57 Aligned_cols=234 Identities=15% Similarity=0.207 Sum_probs=157.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
....|.++.++. +.|+.+=++. |.|||+.+.+++.+++.
T Consensus 86 fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t-------------------------------------- 124 (391)
T KOG2110|consen 86 FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIET-------------------------------------- 124 (391)
T ss_pred cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhc--------------------------------------
Confidence 356788888874 4577776655 99999999888775331
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEE--eCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSS--SMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg--s~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
...+...+.++.++. +.+|+.= ...|.|.|||+.+-+.+..+ .|.+.+.|++|++
T Consensus 125 --------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~- 183 (391)
T KOG2110|consen 125 --------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP- 183 (391)
T ss_pred --------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-
Confidence 112444566666666 4566543 24689999999999888777 8999999999999
Q ss_pred CCCEEEEEECCCe-EEEEeCCCceEEEEecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 606 DDDYFISGSLDAK-VRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 606 ~~~~L~sgs~Dg~-I~IWDl~~~~~~~~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+|.+|++++..|+ |||+.+.+|+.+..+... ..|.+++|+|++++|++.+..++|+||.+........... ..
T Consensus 184 ~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p---~~ 260 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESP---TA 260 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCC---CC
Confidence 9999999999998 799999999877655543 4589999999999999999999999999976542111000 00
Q ss_pred ccCCCCCe--EEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe--CCCCEEEEEeCCCcEEEEE
Q 002086 682 KKSSTRKI--TGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN--ADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 682 ~~~h~~~I--t~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs--pdg~~LaSgs~Dg~I~IWd 757 (969)
...-...+ ..+.+.|. +.-.+||........+...... -..+.+. +...++..++.||.++.|.
T Consensus 261 ~~~~~~~~sk~~~sylps-----------~V~~~~~~~R~FAt~~l~~s~~-~~~~~l~~~~~~~~v~vas~dG~~y~y~ 328 (391)
T KOG2110|consen 261 GTSWFGKVSKAATSYLPS-----------QVSSVLDQSRKFATAKLPESGR-KNICSLSSIQKIPRVLVASYDGHLYSYR 328 (391)
T ss_pred CCcccchhhhhhhhhcch-----------hhhhhhhhccceeEEEccCCCc-cceEEeeccCCCCEEEEEEcCCeEEEEE
Confidence 00000000 00011111 1112355444333333322221 1233444 5788999999999999999
Q ss_pred cCC
Q 002086 758 REE 760 (969)
Q Consensus 758 l~t 760 (969)
+.-
T Consensus 329 l~~ 331 (391)
T KOG2110|consen 329 LPP 331 (391)
T ss_pred cCC
Confidence 975
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=5.2e-11 Score=121.07 Aligned_cols=245 Identities=18% Similarity=0.270 Sum_probs=165.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
-..++|.++|+.++|. ..+|++|+ ||.|+=|.....+.-...+ +.
T Consensus 56 v~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K----~l---------------------------- 100 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATK----RL---------------------------- 100 (325)
T ss_pred eeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccch----hh----------------------------
Confidence 3458999999999998 45688876 6999999987532210000 00
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
|.. ..|.+.-.-.--.|+++...| .+-+++++.|+.++-||+++|+....+ +|++.|.++.-
T Consensus 101 ---------------we~-~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 101 ---------------WEV-KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred ---------------hhh-cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 000 000000011224678888887 566667779999999999999999988 89999999998
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-----------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-----------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-----------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
-. ....+++|+.||+++|||.++++.+..+... ..|.+++. +..++++|+ ...+.+|.++..+..
T Consensus 165 R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 165 RN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred cc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCce
Confidence 55 6778999999999999999999877655432 23455554 455777765 567999999998887
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC-CCEEEEEeCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD-GKYIISASED 750 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd-g~~LaSgs~D 750 (969)
..+.+ ...+..+.|.. ..+++++....|.-|............. ....++..|+.. -++|-.++..
T Consensus 241 ~vfpi---------pa~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gvl~a~ip~~-s~~c~s~s~~~~p~k~~s~ag~s 307 (325)
T KOG0649|consen 241 CVFPI---------PARVHLVDFVD---DCVLIGGEGNHVQSYTLNGVLQANIPVE-STACYSASWQTSPIKFISIAGFS 307 (325)
T ss_pred EEEec---------ccceeEeeeec---ceEEEeccccceeeeeeccEEEEeccCC-ccceeeecccCCceEEEEecccc
Confidence 66544 34567777875 4688888888899998655444332222 223344444432 2455555666
Q ss_pred CcEEEEE
Q 002086 751 SQVYVWK 757 (969)
Q Consensus 751 g~I~IWd 757 (969)
..+.|+.
T Consensus 308 ~~~~i~~ 314 (325)
T KOG0649|consen 308 NKLHILK 314 (325)
T ss_pred eeeeeee
Confidence 6666653
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.41 E-value=8e-12 Score=128.41 Aligned_cols=262 Identities=18% Similarity=0.178 Sum_probs=168.3
Q ss_pred cccccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 436 KDLSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 436 ~dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
|.+++.+-.-.++ .|...|+.+.-.|+ ..|.|-+.|+++.+|++..+..+.......+.+..+.+.............
T Consensus 40 w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll 118 (323)
T KOG0322|consen 40 WVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLL 118 (323)
T ss_pred EEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhhe
Confidence 3555555555666 68889999999997 468899999999999998766555322211221111111100000000000
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--C--cEEEEEeCCCcEEEEECCCCcEEEE
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--S--HLLLSSSMDKTVRLWDMETKSCLKL 590 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~--~~L~Sgs~DgtV~IWDl~t~~~i~~ 590 (969)
...........+.. ......+..... .-.+..+.+.|..+.- + -+|++|-.+|.|.+||+.++..+..
T Consensus 119 ~yp~rgsde~h~~D----~g~~tqv~i~dd----~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~ 190 (323)
T KOG0322|consen 119 EYPSRGSDETHKQD----GGDTTQVQIADD----SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ 190 (323)
T ss_pred ecCCcccchhhhhc----cCccceeEccCc----hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec
Confidence 00000000000000 000000000000 1124566788877643 2 3677788999999999999743322
Q ss_pred -----------eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eE--E-EEecCCCCEEEEEEccCCCEEEEE
Q 002086 591 -----------FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LV--V-DWTDLHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 591 -----------~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~--~-~~~~~~~~V~sv~fspdg~~Lasg 654 (969)
..|..+|.++.|.+ ..+.=++|+.+..+..|++... .+ . ...-.+-.|..+.+-||++.+|++
T Consensus 191 ~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATA 269 (323)
T KOG0322|consen 191 LPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATA 269 (323)
T ss_pred cccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeec
Confidence 26999999999988 5666778888889999988643 21 1 122233458889999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 655 s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
+.|+.|+||..++...+... +-|...|.+++|+|+. .++++++.|++|-+|++
T Consensus 270 GWD~RiRVyswrtl~pLAVL--------kyHsagvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 270 GWDHRIRVYSWRTLNPLAVL--------KYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEEEEeccCCchhhh--------hhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 99999999999998876543 5688999999999986 69999999999999985
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.41 E-value=1.4e-10 Score=131.08 Aligned_cols=201 Identities=14% Similarity=0.157 Sum_probs=131.9
Q ss_pred CCEEEEEecC-CcEEEEE-eCCCcEEEEECC-CCcE--EEEeecCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCCC-c
Q 002086 555 DDVLDLSWSR-SHLLLSS-SMDKTVRLWDME-TKSC--LKLFAHNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSISD-R 627 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~-t~~~--i~~~~h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~-~ 627 (969)
+....+.++| +++|+++ ..++.|.+|++. .+.. +...........++|+| ++++|++++. ++.|.+|++.. +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence 3455788998 6777665 458899999997 3433 22333445678899999 8888877764 88999999964 2
Q ss_pred ---eEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeee-eeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 628 ---LVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQL-NQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 628 ---~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~-~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
+.+...........++++|+++++++++ .++.|.+||+.+...... ...... .........+.|+|++ .++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~---~~~g~~p~~~~~~pdg-~~l 189 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT---TVEGAGPRHMVFHPNQ-QYA 189 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee---cCCCCCCceEEECCCC-CEE
Confidence 2223233334567889999999886655 569999999976332211 000000 1112346689999998 566
Q ss_pred EEEe-CCCcEEEEeCCc----c--eEEEEeec----CCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 002086 703 LVTS-ADSRIRILDGLD----I--VHKFRGFR----NTSSQISAAFNADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 703 ~sgs-~Dg~I~IwD~~~----~--~~~~~~~~----~~~~V~sl~fspdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
+++. .+++|.+|+... . ...+.... +......+.|+|+|++|+++.. ++.|.+|+++.
T Consensus 190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 5555 489999999652 1 11111111 1122346889999999999865 78899999975
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.4e-11 Score=144.35 Aligned_cols=235 Identities=14% Similarity=0.158 Sum_probs=154.1
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCE
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD---AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D---g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~ 650 (969)
+..|.+||...........|...+.+.+|+| +++.|+.++.+ ..|++||+.+++...+.........++|+|||+.
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 5789999998776555557888999999999 99988887654 3699999998865444444444557899999998
Q ss_pred EEEEe-CCCcEEEE--EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--cceEEEEe
Q 002086 651 ALIGS-HKGSCRLY--SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRG 725 (969)
Q Consensus 651 Lasgs-~dg~I~Iw--Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--~~~~~~~~ 725 (969)
|+++. .+|.+.|| |+.++..... ..+...+....|+|++..+++++..++...||+.. .......
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~l---------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQL---------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEee---------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence 88764 67766555 6655543221 23445678899999985445555567888888642 2222111
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEE
Q 002086 726 FRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQ 805 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~ 805 (969)
.+.. ....|+|||++|+..+.++ |.+||+.++ +...+... ..
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g------~~~~lt~~-~~--------------------------- 373 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSG------STEVLSST-FL--------------------------- 373 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCC------CeEEecCC-CC---------------------------
Confidence 1222 3578999999999888764 666998773 21111100 00
Q ss_pred EcccccccCCCCcccccCCCCCCccccCCCCccccCCC--CCCccccCCCCCCCCccccccCCCC
Q 002086 806 TKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPK--KTNKVERVPSPPEEELSLISHDPGI 868 (969)
Q Consensus 806 ~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~--~s~~~~~~l~~pee~l~~is~hP~~ 868 (969)
...+.++|++.+++....++....|.. ..+...+.+..++..+....|+|-+
T Consensus 374 -----------~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 374 -----------DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred -----------CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 012346888888887766665554432 2355556666666667777777754
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2e-12 Score=143.50 Aligned_cols=174 Identities=21% Similarity=0.370 Sum_probs=138.7
Q ss_pred eEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCC-CEEEEEECCCeEEEEe
Q 002086 548 CSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDD-DYFISGSLDAKVRIWS 623 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~-~~L~sgs~Dg~I~IWD 623 (969)
.+|.||++.|.|+.|+. |.+|++||.|-.+.|||.-..+.+..+ +|...|.++.|.|..+ .++++|..|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 47899999999999998 899999999999999999988888887 8999999999999544 5788999999999999
Q ss_pred CCCc-----------eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeee-ee-ecccccCCCCCe
Q 002086 624 ISDR-----------LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQ-VD-FQTKKKSSTRKI 689 (969)
Q Consensus 624 l~~~-----------~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~-~~-~~~~~~~h~~~I 689 (969)
+... ....+..|...|..++..|++ ..+.++++||+|+-||++......... .. .........-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9741 123355677888899999998 788899999999999999743221110 00 000112233567
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEeCCcceE
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~ 721 (969)
.++.++|..+.+|++|+.|--.++||.+....
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhcc
Confidence 89999999999999999999999999654433
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.37 E-value=2e-11 Score=135.89 Aligned_cols=165 Identities=20% Similarity=0.263 Sum_probs=133.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe-----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-------------
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF-----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD------------- 626 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~-----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~------------- 626 (969)
+--|+.|=.-|.|.+.|....+..+.+ -....|+|+.|-|.+...|+++-.+|.+++||..-
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 455777777788888887765444444 24578999999998888999999999999997621
Q ss_pred -c---eE------------EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 627 -R---LV------------VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 627 -~---~~------------~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+ .+ ..+.-....|...+|+|||++||+.+.||.++|||..+.+++... +...+...
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m--------kSYFGGLL 336 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM--------KSYFGGLL 336 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH--------HhhccceE
Confidence 1 01 122223356889999999999999999999999999887654332 55678899
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs 738 (969)
|++|+||+ ++|++|+.|.-|.||...+..-+..++.|...|..++|.
T Consensus 337 CvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 337 CVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99999999 899999999999999999888888999999999999998
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.37 E-value=6.5e-13 Score=153.42 Aligned_cols=278 Identities=18% Similarity=0.248 Sum_probs=194.6
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEE
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IW 622 (969)
+.+..+.||...|+|+.|.. +.++++|+.|..|+||.+.++.|+... +|.+.|+.++.+. +..++++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEE
Confidence 34456889999999999998 999999999999999999999999887 9999999999997 77889999999999999
Q ss_pred eCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 623 SISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 623 Dl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
-+..+.++. +.+|.+.|++++|+|-. +.+.||++++||.+-. ..... ...........+..+.|...+ ..
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~~y~---prp~~~~~~~~~~s~~~~~~~-~~ 330 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PRIYV---PRPLKFTEKDLVDSILFENNG-DR 330 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc-ccccC---CCCCCcccccceeeeeccccc-cc
Confidence 999998775 56788999999999964 6778999999999811 11110 000111223455666676655 78
Q ss_pred EEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCce
Q 002086 702 VLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD-GKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~ 780 (969)
+++++.|+.-..|....... +...+.-+.++.| ..+.+++-.+-.+++|++.++.. ......+.+..
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l------~H~l~ghsd~~ 398 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL------LHNLMGHSDEV 398 (1113)
T ss_pred cccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchh------hhhhcccccce
Confidence 99999999998887433211 1111111222222 25677888888999999998533 22233333333
Q ss_pred eeeeeEEeecCCCcccCCCCCccEEEcccccc------cCCCCcccccCCCCCCccccCCCCccccCCCC
Q 002086 781 QCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKR------ISSNPTSATSSPTKEGSPAGHSRRLLPPLPKK 844 (969)
Q Consensus 781 ~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~------~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~ 844 (969)
...++..-.+--.+-+|.++...+|....+.. .....+...||++|..+++...-+.+|.+.++
T Consensus 399 yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 399 YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 32222222222333467777777775544432 13456678899999998888888888777543
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.37 E-value=4.7e-11 Score=125.97 Aligned_cols=208 Identities=15% Similarity=0.236 Sum_probs=166.5
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE---EEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC---LKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~---i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.+.--..+|+|.+|++ ...++.+.....|.||.....+. ..++ .|...|++|+|.| ..+.|++|+.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 3334457899999998 78899999999999999887763 3344 7999999999999 889999999999999999
Q ss_pred CC-Cc---eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 624 IS-DR---LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 624 l~-~~---~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
.. .+ ..+.++.++..++++.|+|.++.|++|+....|.||-++...---. .+..++.+...|+++.|+|.+
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV----sKhikkPirStv~sldWhpnn- 158 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV----SKHIKKPIRSTVTSLDWHPNN- 158 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh----hhhhCCccccceeeeeccCCc-
Confidence 94 43 3566788899999999999999999999999999998876543211 122336678899999999987
Q ss_pred ceEEEEeCCCcEEEEeCC-----c------------ceEEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 700 SEVLVTSADSRIRILDGL-----D------------IVHKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~-----~------------~~~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
-++++|+.|+..|++... + ........ ...+.+..+.|+|+|..|+=.+.|+.|.+=|...+
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 789999999999998621 0 00011111 45677899999999999999999999999998775
Q ss_pred C
Q 002086 762 R 762 (969)
Q Consensus 762 ~ 762 (969)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 3
No 211
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=3.5e-12 Score=140.46 Aligned_cols=301 Identities=17% Similarity=0.168 Sum_probs=209.8
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
.+++.+|.+.|+.|.|-..+..++++++|..+..|. |.... ..+++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~Wd------W~~~~-~~l~f--------------------------- 180 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWD------WVSGS-PKLSF--------------------------- 180 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeeh------hhccC-ccccc---------------------------
Confidence 355678888888888888888888888888776664 21110 01111
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeC--CCCEEEEEeCCCcEEEEecccceEEEe
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSL--DARFLASAGEDRVIHVWEVQECEVMSM 488 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSp--Dg~~LaTgs~DgtVrIWDl~tg~~l~~ 488 (969)
..||...|...+|-| +.+-|++++.||.|++=.+.......
T Consensus 181 ------------------------------------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e- 223 (559)
T KOG1334|consen 181 ------------------------------------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVE- 223 (559)
T ss_pred ------------------------------------ccccccchhhhhccCCCCCcCceeccccCceeeeeecccccee-
Confidence 235777777777777 44579999999999986654211111
Q ss_pred ecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--Cc
Q 002086 489 SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SH 566 (969)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~ 566 (969)
....+..|.+.|..++.-| ..
T Consensus 224 ---------------------------------------------------------~t~rl~~h~g~vhklav~p~sp~ 246 (559)
T KOG1334|consen 224 ---------------------------------------------------------NTKRLAPHEGPVHKLAVEPDSPK 246 (559)
T ss_pred ---------------------------------------------------------cceecccccCccceeeecCCCCC
Confidence 0124566999999999988 57
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe----ecCC---CeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-------EEEE
Q 002086 567 LLLSSSMDKTVRLWDMETKSCLKLF----AHND---YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-------VVDW 632 (969)
Q Consensus 567 ~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~---~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-------~~~~ 632 (969)
.|++++.|+.|.-+|++++.....+ .+.. ....|+.+|.+.++|++++.|..+++||.+.-. +-++
T Consensus 247 ~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f 326 (559)
T KOG1334|consen 247 PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKF 326 (559)
T ss_pred cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhc
Confidence 8999999999999999887655443 3444 678999999777899999999999999986521 1112
Q ss_pred e------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee---eee--eeeecccccCC--CCCeEEEEEcCCCC
Q 002086 633 T------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH---QLN--QVDFQTKKKSS--TRKITGFQFSPSNP 699 (969)
Q Consensus 633 ~------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~---~~~--~~~~~~~~~~h--~~~It~l~fspd~~ 699 (969)
. ...-.|++++|+.++.-|++...|-.|+++.-..+.-. ... ........++| ...|.++-|---..
T Consensus 327 ~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs 406 (559)
T KOG1334|consen 327 CPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS 406 (559)
T ss_pred CCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc
Confidence 1 12245999999999988999999999999954332220 000 00011112333 34577777764334
Q ss_pred ceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 700 SEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.++++|+.-|.|.||+... .+..+.+-.+ -|+|+.=+|--..||+++-|..|+||--.+.
T Consensus 407 EyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 407 EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 7999999999999999554 3344444433 6889999999999999999999999987543
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.35 E-value=3.4e-10 Score=119.62 Aligned_cols=176 Identities=14% Similarity=0.273 Sum_probs=132.3
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEe---cCCCCEEEEEEccCCCE
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWT---DLHEMVTAACYTPDGQN 650 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~---~~~~~V~sv~fspdg~~ 650 (969)
..|.|||=....++..+....+|.+|.+.+ +.|++.- .+.|+||...+. +.+..+ .....+.+++-..+..+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 579999988888999999999999999975 5566554 578999998743 333222 22233333333334445
Q ss_pred EEE-EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc-EEEEeCCcce--EEEEee
Q 002086 651 ALI-GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR-IRILDGLDIV--HKFRGF 726 (969)
Q Consensus 651 Las-gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~-I~IwD~~~~~--~~~~~~ 726 (969)
||. |-.-|.|.|-|+...+..... ...+|...|.|++.+.+| ..+++++..|+ |||||..... ..++.-
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~------~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPS------IINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCce------EEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 554 557799999999876652111 127899999999999998 89999999998 8999976544 344434
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 727 RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.....|.+++|||+..+|+++|+.|+|+||.+...
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 45667999999999999999999999999999874
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=7.9e-11 Score=137.95 Aligned_cols=206 Identities=16% Similarity=0.131 Sum_probs=142.1
Q ss_pred eeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEE
Q 002086 539 VFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 539 v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs 614 (969)
+++..+.....+..|...+....|+| ++.|+.++.+ ..|++||+.+++........+....++|+| +++.|+.++
T Consensus 188 i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~ 266 (429)
T PRK01742 188 VADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFAS 266 (429)
T ss_pred EECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEE
Confidence 34444544556778888999999999 7788877654 469999999887544433334455789999 888887764
Q ss_pred -CCCeEE--EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 615 -LDAKVR--IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 615 -~Dg~I~--IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
.+|.+. +||+.++....+..+...+....|+|||+.|+..+ .+|...||++........ . + .+.. .
T Consensus 267 ~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~--l-----~~~~--~ 336 (429)
T PRK01742 267 SKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-L--V-----GGRG--Y 336 (429)
T ss_pred ecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-E--e-----cCCC--C
Confidence 677655 55777777777777777788999999999877655 578888887754321111 0 0 1111 3
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
...|+|++ ..|+.++.+ .+.+||............ .....+.|+|||++|+.++.++.+.+|.+.
T Consensus 337 ~~~~SpDG-~~ia~~~~~-~i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 337 SAQISADG-KTLVMINGD-NVVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CccCCCCC-CEEEEEcCC-CEEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 57899998 566666665 466689765432211111 123467899999999999999999888864
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.30 E-value=5.4e-10 Score=134.72 Aligned_cols=220 Identities=15% Similarity=0.158 Sum_probs=159.2
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC-------cEEEEee-cCCCeEEEEEe
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK-------SCLKLFA-HNDYVTCIQFN 603 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~-------~~i~~~~-h~~~V~sv~fs 603 (969)
..+...|...+..+..+..|...|..++.++ +.+|+|||.||+|++||...- ++..++. ....+.++.+.
T Consensus 1028 ~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1028 GSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence 3444567778888889999999999999987 489999999999999998642 2333443 67889999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceE-------EEEec-C-CCC-EEEEEEccC-CC-EEEEEeCCCcEEEEEcCCCcee
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLV-------VDWTD-L-HEM-VTAACYTPD-GQ-NALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~-------~~~~~-~-~~~-V~sv~fspd-g~-~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+ .++.+++++.||.|++.++..... ..... + .+. |..-+|... +. .++.+...+.|..||++.....
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 8 899999999999999999875211 11111 1 122 333344332 23 6778899999999999876543
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCC---CCEEEEE
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-FRNTSSQISAAFNAD---GKYIISA 747 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspd---g~~LaSg 747 (969)
...+ .....+-|++++.+|.+ .++++|+..|.+.+||++=....... +.+...+..+..+|- ....+++
T Consensus 1187 w~lk------~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1187 WRLK------NQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred Hhhh------cCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 3222 24456889999999988 79999999999999997643333322 344567777777663 3455555
Q ss_pred e--CCCcEEEEEcCCC
Q 002086 748 S--EDSQVYVWKREEH 761 (969)
Q Consensus 748 s--~Dg~I~IWdl~t~ 761 (969)
+ ..+.|-+|++.++
T Consensus 1260 ~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cccCCCceeeeecccC
Confidence 4 4678999999985
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.27 E-value=1.4e-11 Score=135.17 Aligned_cols=231 Identities=13% Similarity=0.177 Sum_probs=183.4
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
-.-+.+.++.+|++|+.||.-|.|-.+|+.++.+...+.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----------------------------------------- 168 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----------------------------------------- 168 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-----------------------------------------
Confidence 345678999999999999999999999999887765321
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~ 611 (969)
-...|.++.|..+..+++......++|||-. |..+..+.....|..+.|.| ..-+|+
T Consensus 169 ---------------------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~rLeFLP-yHfLL~ 225 (545)
T KOG1272|consen 169 ---------------------VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVARLEFLP-YHFLLV 225 (545)
T ss_pred ---------------------hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchhhhcccc-hhheee
Confidence 1245677888776666666777889999965 55566666677899999999 788889
Q ss_pred EEECCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+++..|.++.-|+.+|+++..+. ..+.+..++-+|-+..+-+|...|+|.+|.....+.+. +...|.++|.
T Consensus 226 ~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~V~ 297 (545)
T KOG1272|consen 226 AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGPVS 297 (545)
T ss_pred ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCCcc
Confidence 99999999999999998876444 45778889999998899999999999999987766432 2367999999
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
+|++.++| .++++++.|..++|||++........+. ......++||..| |++.+....|.||.=
T Consensus 298 siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 298 SIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred eEEECCCC-cEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 99999988 8999999999999999888765544443 4556778888765 344444558999963
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.2e-10 Score=128.86 Aligned_cols=218 Identities=13% Similarity=0.073 Sum_probs=146.5
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeC---CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGE---DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~---DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+..+...+.+.+|||||+.|+..+. +..|.+|++.+++.....
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--------------------------------- 239 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------------------------- 239 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc---------------------------------
Confidence 35557788999999999998886542 457889998776543210
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEE-eCCC--cEEEEECCCCcEEEEeecCCCeE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSS-SMDK--TVRLWDMETKSCLKLFAHNDYVT 598 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg-s~Dg--tV~IWDl~t~~~i~~~~h~~~V~ 598 (969)
.+.+| +..+.|+| ++.|+.. +.+| .|++||+.+++......+...+.
T Consensus 240 --------------------------~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~ 290 (429)
T PRK03629 240 --------------------------SFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT 290 (429)
T ss_pred --------------------------CCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcC
Confidence 11122 23578999 6666644 4455 59999999998877666666788
Q ss_pred EEEEecCCCCEEEEEECC-C--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceee
Q 002086 599 CIQFNPMDDDYFISGSLD-A--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKLHQ 672 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~D-g--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~~~ 672 (969)
...|+| +++.|+..+.+ + .|+++|+.++....+...........|+|+|++|+..+.+ ..|.+||+.++....
T Consensus 291 ~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 291 EPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred ceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 999999 89988777654 3 4556677777665555444556778999999999876543 358889998876432
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc---EEEEeCCc-ceEEEEeecCCCCeEEEEEeC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR---IRILDGLD-IVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~---I~IwD~~~-~~~~~~~~~~~~~V~sl~fsp 739 (969)
.. . ........|+|++ ..|+.++.++. +++++... ....+. .+...+...+|+|
T Consensus 370 Lt--------~--~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~--~~~~~~~~p~Wsp 427 (429)
T PRK03629 370 LT--------D--TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLP--ATDGQVKFPAWSP 427 (429)
T ss_pred eC--------C--CCCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECc--cCCCCcCCcccCC
Confidence 21 0 1122356799998 66777766654 66677532 223333 3445667778876
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=4e-10 Score=121.86 Aligned_cols=203 Identities=11% Similarity=0.061 Sum_probs=155.5
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc----EEEEeecCCCeEEEEEecCCCCEEEEEECC--CeEEEEeCC
Q 002086 552 GHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS----CLKLFAHNDYVTCIQFNPMDDDYFISGSLD--AKVRIWSIS 625 (969)
Q Consensus 552 gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~----~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D--g~I~IWDl~ 625 (969)
..++.|..+... +..|++|-.+|.+.+|....+. .+..+.....+..|.-++.....+++|+.. ..+.|||+.
T Consensus 103 l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 345566666655 4788999999999999998443 233334557777788787666777889998 889999998
Q ss_pred CceEEEE--------ec--CCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE
Q 002086 626 DRLVVDW--------TD--LHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 626 ~~~~~~~--------~~--~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
..+.+.. ++ ..-+++.+.|-+. ...|++++.-+.+++||.+.+.. ++..+ .....+|+++.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~f------d~~E~~is~~~ 254 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQF------DFLENPISSTG 254 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-ceeEe------ccccCcceeee
Confidence 8743321 11 1134788999987 88999999999999999996543 22222 34478899999
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
..|.+ .++++|..-+.+..||.+....... .....+.|.++..+|.+++|++++-|..|+|+|+++.+.
T Consensus 255 l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 255 LTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ecCCC-cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 99988 8999999999999999887554433 234467799999999999999999999999999998443
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.6e-09 Score=126.88 Aligned_cols=207 Identities=12% Similarity=0.103 Sum_probs=141.7
Q ss_pred eecCCCceeEeccCCCCEEEEEecC-CcEEEEEe---CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEE-E
Q 002086 540 FSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS---MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISG-S 614 (969)
Q Consensus 540 ~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs---~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sg-s 614 (969)
++..+.....+..+...+...+|+| ++.|+..+ .+..|.+||+.+++........+.+..+.|+| ++..|+.. +
T Consensus 184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~ 262 (429)
T PRK03629 184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALS 262 (429)
T ss_pred EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEc
Confidence 3334444455666777899999999 67777654 34579999999987666555555566789999 88877754 4
Q ss_pred CCC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 615 LDA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK-G--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 615 ~Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d-g--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
.+| .|++||+.++.+..+......+....|+|+|+.|+..+.+ + .|+++|+.++..... .......
T Consensus 263 ~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---------t~~~~~~ 333 (429)
T PRK03629 263 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---------TWEGSQN 333 (429)
T ss_pred CCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---------ecCCCCc
Confidence 455 5999999998887777666678899999999998877654 4 455556666543221 1122345
Q ss_pred EEEEEcCCCCceEEEEe-CC--CcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc---EEEEEcCC
Q 002086 690 TGFQFSPSNPSEVLVTS-AD--SRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQ---VYVWKREE 760 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs-~D--g~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~---I~IWdl~t 760 (969)
....|+|++ ..|+..+ .+ ..|++||..... ..+.. ........|+|||++|+.++.++. +++++++.
T Consensus 334 ~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 334 QDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred cCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 578899999 4555543 33 358888865432 22221 122346789999999999998765 67777753
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.25 E-value=6.6e-09 Score=118.69 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=165.0
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+.|..+.+.+.++..+...-..+.|+|||+++++++.||.|.++|+.+++.+.....
T Consensus 20 viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----------------------- 76 (369)
T PF02239_consen 20 VIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----------------------- 76 (369)
T ss_dssp EEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------------------------
T ss_pred EEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----------------------
Confidence 346667777888876655455688999999999999999999999999887764321
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCCCcEEEEee
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDMETKSCLKLFA 592 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t~~~i~~~~ 592 (969)
.....++++++ +++++++. ..+.|.++|.++.+.++.+.
T Consensus 77 ---------------------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 77 ---------------------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp ---------------------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred ---------------------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 12346789998 77777665 68999999999999998772
Q ss_pred --------cCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEE-eCCCcE
Q 002086 593 --------HNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIG-SHKGSC 660 (969)
Q Consensus 593 --------h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~I 660 (969)
....+.+|..+| ....++..-. -+.|.+.|..... ...............|+|++++++++ ...+.|
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp --EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred cccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 234678888888 5665555544 4889888987654 33455566778899999999988775 456688
Q ss_pred EEEEcCCCceeeeeeee-----------------------------------------------ecccccCCCCCeEEEE
Q 002086 661 RLYSIEDSKLHQLNQVD-----------------------------------------------FQTKKKSSTRKITGFQ 693 (969)
Q Consensus 661 ~IwDl~~~~~~~~~~~~-----------------------------------------------~~~~~~~h~~~It~l~ 693 (969)
-++|..+++........ ..........+ .-+.
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 88888877654321100 00001111222 4567
Q ss_pred EcCCCCceEEEE----eCCCcEEEEeCCcceEEEEeec-CCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCC
Q 002086 694 FSPSNPSEVLVT----SADSRIRILDGLDIVHKFRGFR-NTSSQISAAFNADGKYIISASEDS--QVYVWKREEHR 762 (969)
Q Consensus 694 fspd~~~~l~sg----s~Dg~I~IwD~~~~~~~~~~~~-~~~~V~sl~fspdg~~LaSgs~Dg--~I~IWdl~t~~ 762 (969)
.+|++ .++.+. .....|.++|..+......... ....+..+.|++||+++..+..++ .|.|||..+.+
T Consensus 276 thP~s-~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 276 THPDS-RYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp --TT--SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred cCCCC-ccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 78888 566665 4568899999887744333221 222488999999999877665543 69999999843
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.3e-09 Score=127.79 Aligned_cols=219 Identities=17% Similarity=0.136 Sum_probs=144.3
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..|...|.+.+|+|||+.|+.++.+ ..|.+||+.+++....
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l--------------------------------- 243 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV--------------------------------- 243 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---------------------------------
Confidence 4466788899999999999999987743 4699999887654321
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCC--cEEEEECCCCcEEEEeecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDK--TVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V 597 (969)
..+.+...+..|+| ++.| ++.+.+| .|++||+.+++......+....
T Consensus 244 -----------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~ 294 (433)
T PRK04922 244 -----------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGID 294 (433)
T ss_pred -----------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCc
Confidence 11122234678998 5555 4556665 5999999999877666666666
Q ss_pred EEEEEecCCCCEEEEEEC-CCe--EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSL-DAK--VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---SCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~-Dg~--I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---~I~IwDl~~~~~~ 671 (969)
...+|+| ++.+|+.++. +|. |+++|+.+++...+..........+|+|+|++|+..+.++ .|.+||+.+++..
T Consensus 295 ~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 295 TEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred cceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 7889999 8888887764 444 7777887776655443344455789999999998765443 6999999887653
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC---CCcEEEEeCCcce-EEEEeecCCCCeEEEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA---DSRIRILDGLDIV-HKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~---Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fsp 739 (969)
... +........|+|++ ..++..+. ...|++++..... ..+. .+.+.+...+|+|
T Consensus 374 ~Lt----------~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 374 TLT----------PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRVRQRLV--SADGEVREPAWSP 432 (433)
T ss_pred ECC----------CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCCceEEcc--cCCCCCCCCccCC
Confidence 211 11123456899998 45444443 2357777764322 2222 2234455566665
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.3e-09 Score=125.99 Aligned_cols=206 Identities=15% Similarity=0.155 Sum_probs=145.3
Q ss_pred cCCCceeEeccCCCCEEEEEecC-CcEEEEEeC---CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECC
Q 002086 542 LSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM---DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLD 616 (969)
Q Consensus 542 ~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~---DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~D 616 (969)
..+.....+..|...+....|+| ++.|+..+. +..|.+||+.+++......+.+.+.+..|+| ++..|+ +.+.+
T Consensus 189 ~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~ 267 (435)
T PRK05137 189 QDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQG 267 (435)
T ss_pred CCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecC
Confidence 34455556778888999999999 777777653 4689999999998766666777888999999 887765 55555
Q ss_pred Ce--EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEE
Q 002086 617 AK--VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691 (969)
Q Consensus 617 g~--I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~ 691 (969)
+. |++||+.++.+..+..+........|+|||+.|+..+. +| .|++||+.++...... .....+..
T Consensus 268 g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---------~~~~~~~~ 338 (435)
T PRK05137 268 GNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---------FGGGRYST 338 (435)
T ss_pred CCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---------cCCCcccC
Confidence 55 88889999888777766666778999999999887764 33 6888888776543221 12344566
Q ss_pred EEEcCCCCceEEEEeCC---CcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCC
Q 002086 692 FQFSPSNPSEVLVTSAD---SRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED------SQVYVWKREE 760 (969)
Q Consensus 692 l~fspd~~~~l~sgs~D---g~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D------g~I~IWdl~t 760 (969)
..|+|++ ..|+....+ ..|.+||......... .....+....|+|||++|+..+.+ ..|+++++..
T Consensus 339 ~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~~~l--t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 339 PVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGERIL--TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred eEECCCC-CEEEEEEcCCCceEEEEEECCCCceEec--cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 8899999 555554433 3588888643222111 112235678999999998776543 2577777764
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.7e-09 Score=115.81 Aligned_cols=300 Identities=17% Similarity=0.234 Sum_probs=177.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
+-.+..++|++.-..+|.+..|-+|++||-...............+..+.+.+........+......... ....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~-----~s~t 172 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWS-----DSRT 172 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEE-----cCcc
Confidence 34567889998666789999999999999765322211111122223333333222111111111100000 0000
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
.....+........-.+....|| ..|+.+.|.+ +..+++++. |..|+|||..++.++... ..-+.++-+.|+| ++
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dg 250 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DG 250 (445)
T ss_pred cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CC
Confidence 00000000000111122234566 7899999998 788888875 678999999999988877 5667889999999 99
Q ss_pred CEEEEEECCCeEEEEeCCC-ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce----e-------eeee
Q 002086 608 DYFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL----H-------QLNQ 675 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~----~-------~~~~ 675 (969)
++|+++.-|+..++|.... -....+.-..+.|...+|+|.|.+|+..+. |.-++|.+.-... . ....
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence 9999999999999996543 344455555668999999999998876553 3334454421110 0 0011
Q ss_pred eeec-----ccccCCCCCeEEEEEcCCCCceEEEEeCCCc--------EEEEeCCcce---EEEEeecCCCCeEEEEEeC
Q 002086 676 VDFQ-----TKKKSSTRKITGFQFSPSNPSEVLVTSADSR--------IRILDGLDIV---HKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 676 ~~~~-----~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--------I~IwD~~~~~---~~~~~~~~~~~V~sl~fsp 739 (969)
.++. .....-.+.+.+++|.|.| .++++.-..+. |.+||..+.. ..+.+......-..++|+|
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeee
Confidence 1111 1112235788999999998 67777644333 6678865422 1222332222234566766
Q ss_pred ---CCCEEEEEeCCCcEEEEEcC
Q 002086 740 ---DGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 740 ---dg~~LaSgs~Dg~I~IWdl~ 759 (969)
+|.+|..+=..|.|.-|++.
T Consensus 409 l~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCcEEEEEeccCceEeeeeE
Confidence 67788888788888888775
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2.7e-09 Score=125.25 Aligned_cols=207 Identities=15% Similarity=0.201 Sum_probs=141.8
Q ss_pred ecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEEC
Q 002086 541 SLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSL 615 (969)
Q Consensus 541 ~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~ 615 (969)
+..+.....+..|...+....|+| ++.|+..+.+ ..|.+||+.+++......+.+...+..|+| ++..|+ +.+.
T Consensus 190 D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~ 268 (433)
T PRK04922 190 DSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSR 268 (433)
T ss_pred CCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeC
Confidence 334444456667778899999999 7788877643 469999999988766655566667889999 887665 5555
Q ss_pred CC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CCc--EEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 616 DA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KGS--CRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 616 Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg~--I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+| .|++||+.++++..+..+.......+|+|+|+.|+..+. +|. |+++++.+++..... .......
T Consensus 269 ~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---------~~g~~~~ 339 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---------FQGNYNA 339 (433)
T ss_pred CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---------cCCCCcc
Confidence 55 599999999887776666555678899999999887764 444 666777666543211 1122344
Q ss_pred EEEEcCCCCceEEEEeCC-C--cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCC
Q 002086 691 GFQFSPSNPSEVLVTSAD-S--RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED---SQVYVWKREE 760 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~D-g--~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D---g~I~IWdl~t 760 (969)
..+|+|++ ..|+..+.+ + .|++||........- .+........|+|||++|+..+.+ +.|+++++..
T Consensus 340 ~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~~L--t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 340 RASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVRTL--TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CEEECCCC-CEEEEEECCCCceeEEEEECCCCCeEEC--CCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 68999998 555554433 2 599999654332211 122234467899999988877653 3577787754
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2.3e-09 Score=125.99 Aligned_cols=221 Identities=10% Similarity=0.074 Sum_probs=148.5
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeC---CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGE---DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~---DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+.+..|.+.|.+.+|+|||+.|+..+. +..|.+||+.+++...
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------------------- 240 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------------------- 240 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---------------------------------
Confidence 3456678899999999999999888764 4689999998765422
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCc--EEEEECCCCcEEEEeecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKT--VRLWDMETKSCLKLFAHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~Dgt--V~IWDl~t~~~i~~~~h~~~ 596 (969)
+..+.+.+....|+| ++.| ++.+.++. |.+||+.+++......+...
T Consensus 241 -----------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~ 291 (435)
T PRK05137 241 -----------------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAI 291 (435)
T ss_pred -----------------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCc
Confidence 122334556788999 6555 45666655 77889999887766666667
Q ss_pred eEEEEEecCCCCEEEEEEC-CC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSL-DA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~-Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~ 670 (969)
.....|+| ++..|+..+. +| .|++||+.++....+......+....|+|+|+.|+....+ ..|.+||+.++..
T Consensus 292 ~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 292 DTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred cCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 78899999 8888887764 33 6888998887776665555567778999999999876643 3688888865543
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-----CcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-----SRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-----g~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
... . ....+....|+|++..+++++... ..|+++|........ ......+...+|+|
T Consensus 371 ~~l---------t-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~--l~~~~~~~~p~Wsp 432 (435)
T PRK05137 371 RIL---------T-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE--VPTPGDASDPAWSP 432 (435)
T ss_pred Eec---------c-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE--ccCCCCccCcccCC
Confidence 211 0 112356788999984444444333 257777754322211 11223345556665
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.20 E-value=9.5e-11 Score=123.59 Aligned_cols=347 Identities=15% Similarity=0.186 Sum_probs=209.3
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccc
Q 002086 456 TIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHV 535 (969)
Q Consensus 456 ~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (969)
-++|||+|+|+|+++.- .+.|-|..+.++.+.+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~--------------------------------------------- 46 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL--------------------------------------------- 46 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------------------------------------------
Confidence 46899999999999866 67788877655433111
Q ss_pred cceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC-CEEE
Q 002086 536 PETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD-DYFI 611 (969)
Q Consensus 536 ~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~-~~L~ 611 (969)
--+.|.-+.|.. -..|.....|+.|.+|++...+-...+ ....++.++.|+| ++ ..|.
T Consensus 47 -----------------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~ 108 (447)
T KOG4497|consen 47 -----------------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILL 108 (447)
T ss_pred -----------------HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEee
Confidence 123344456654 245566678999999999988877666 5678899999999 77 5566
Q ss_pred EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEE
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~ 691 (969)
+...|-.|.+|.+.+............+..++|+|+|++.+..+.-.....+.+...+ ...+........-..++
T Consensus 109 tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~-----~W~ll~~f~~dT~Dltg 183 (447)
T KOG4497|consen 109 TSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK-----AWILLKEFKLDTIDLTG 183 (447)
T ss_pred eecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH-----HHHHHHhcCCCcccccC
Confidence 7778899999999999888777777778999999999999988765332222222111 01111222445566789
Q ss_pred EEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCC-----
Q 002086 692 FQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST----- 766 (969)
Q Consensus 692 l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t----- 766 (969)
+.|+|+| .. +.+||.--....+ .......+..++|+|.+++|+.|+.|+.++|-+--+-+....
T Consensus 184 ieWsPdg-~~---------laVwd~~Leykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~ 252 (447)
T KOG4497|consen 184 IEWSPDG-NW---------LAVWDNVLEYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC 252 (447)
T ss_pred ceECCCC-cE---------EEEecchhhheee-eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch
Confidence 9999987 33 4467732111111 222334578899999999999999999998865433111000
Q ss_pred -Cc-e--eEEecccCC----ceeeeeeEEeecCCCcccCC---------CCCccEEEccccc---ccCCCCcccccCCCC
Q 002086 767 -GK-R--AIITTRNHE----HFQCKDVSVAIPWPGMVKGE---------PPPTPVQTKKHAK---RISSNPTSATSSPTK 826 (969)
Q Consensus 767 -~k-~--~~~~~~~~~----~~~~~~~s~~~~w~~~i~G~---------~~~~~v~~~~~~~---~~~~~~~~~~~SP~~ 826 (969)
-. + ..+.....+ ...|.. +..+.-.+..+. ...+.+..++... .+.......++|+++
T Consensus 253 s~~dp~~~~~~ke~~~~~ql~~~cLs--f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds 330 (447)
T KOG4497|consen 253 SYHDPTLHLLEKETFSIVQLLHHCLS--FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS 330 (447)
T ss_pred hccCchhhhhhhhhcchhhhcccccc--cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence 00 0 000000000 011211 111111111111 1122222222111 011112355789999
Q ss_pred CCccccCCCC--ccccCCCCCCccccCCCCCCCCccccccCCCCCCccccCCCccccCCCC
Q 002086 827 EGSPAGHSRR--LLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSNSSSIRSGDSP 885 (969)
Q Consensus 827 ~~i~~~~~~~--~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s~~~~r~~~~~ 885 (969)
.++++..... .|..|.....++...+ .-.+++.+.-|||+-+..+...-.+.=|=++|
T Consensus 331 ~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 331 TYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred eEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 8888765544 6778888777777765 34457778889999887776643223344444
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=9e-10 Score=117.86 Aligned_cols=194 Identities=18% Similarity=0.286 Sum_probs=145.9
Q ss_pred CCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc---
Q 002086 554 LDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--- 627 (969)
Q Consensus 554 ~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--- 627 (969)
+..+..++|++ -..++++..|-.|++||-.. .+...+ .....|+|++|-|.....|+.|+..| |.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34677899998 56788999999999999887 444444 34578999999997777888887755 999987421
Q ss_pred ------------eEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 628 ------------LVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 628 ------------~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
++.... .+..|+++.|.+||..+++++ .+..|.|||..++...... ....+.++-+.|
T Consensus 176 ~r~~~~~s~~~~qvl~~p-gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~--------~~glgg~slLkw 246 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDP-GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI--------PKGLGGFSLLKW 246 (445)
T ss_pred ccccccccccchhheeCC-CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc--------ccCCCceeeEEE
Confidence 111222 236799999999999999877 4679999999998875542 245677899999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 695 SPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+||+ .+|+++.-|+..++|...+.....+.....+.|...+|+|+|++|+-... |.-.+|.+.-
T Consensus 247 SPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 247 SPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred cCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence 9999 79999999999999975544444444445668999999999988765553 3445555543
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=2.3e-09 Score=125.48 Aligned_cols=176 Identities=17% Similarity=0.221 Sum_probs=118.1
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCE
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD---AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D---g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~ 650 (969)
...|.+||...........+...+.+.+|+| +++.|+..+.+ ..|++||+.+++...+......+....|+|||+.
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 3468888886555555567888999999999 89888877643 3599999999887666655666778999999998
Q ss_pred EEE-EeCCCcEEEEE--cCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe--CCcc-eEEEE
Q 002086 651 ALI-GSHKGSCRLYS--IEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDI-VHKFR 724 (969)
Q Consensus 651 Las-gs~dg~I~IwD--l~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD--~~~~-~~~~~ 724 (969)
|+. .+.+|...||. +.++..... ..+........|+|++..+++++..++...||. .... ...+.
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~l---------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRL---------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEEC---------CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 874 56777766665 444432211 223334566789999844444444455655654 3322 22222
Q ss_pred eecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCCC
Q 002086 725 GFRNTSSQISAAFNADGKYIISASEDS---QVYVWKREEH 761 (969)
Q Consensus 725 ~~~~~~~V~sl~fspdg~~LaSgs~Dg---~I~IWdl~t~ 761 (969)
.. ........|+|||++|+..+.++ .|++||+.++
T Consensus 325 ~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 325 FT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred cC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 11 22334678999999998877654 5999999873
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=5.7e-09 Score=122.21 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=137.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..|.+.|.+.+|+|||+.|+..+.+ ..|.+||+.+++....
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l--------------------------------- 235 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV--------------------------------- 235 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---------------------------------
Confidence 3455788899999999999999887643 3599999987754321
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCCcEEEE--ECCCCcEEEEeecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDKTVRLW--DMETKSCLKLFAHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~DgtV~IW--Dl~t~~~i~~~~h~~~V 597 (969)
....+.+.+..|+| ++.|+ +.+.++...|| |+.++.......+...+
T Consensus 236 -----------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~ 286 (427)
T PRK02889 236 -----------------------------ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGID 286 (427)
T ss_pred -----------------------------ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCC
Confidence 11122345788999 55655 56778876666 55556544444555566
Q ss_pred EEEEEecCCCCEEEEEEC-CCeEEEE--eCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSL-DAKVRIW--SISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---SCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~-Dg~I~IW--Dl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---~I~IwDl~~~~~~ 671 (969)
....|+| ++..|+..+. +|...|| ++.++................|+|+|++|+..+.++ .|.+||+.+++..
T Consensus 287 ~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 287 TEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred cCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 7789999 8988776654 4555555 445555443333333345678999999999877654 6999999887643
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc--EEEEeCCcc-eEEEEeecCCCCeEEEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR--IRILDGLDI-VHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~~~~-~~~~~~~~~~~~V~sl~fsp 739 (969)
... . ........|+|++..++++....+. +++.+.... ...+. .+.+.+...+|+|
T Consensus 366 ~lt--------~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~--~~~g~~~~p~wsp 424 (427)
T PRK02889 366 ALT--------D--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS--VQGGDVREPSWGP 424 (427)
T ss_pred Ecc--------C--CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee--cCCCCCCCCccCC
Confidence 221 1 1123567899999544444444443 444444221 11221 2334455566665
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.13 E-value=1.1e-09 Score=122.41 Aligned_cols=101 Identities=23% Similarity=0.473 Sum_probs=89.4
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEE
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IW 622 (969)
.|+..+.--.+.|..++|++ +++|++.+.||.+||+|+.+.+++..+ .--+...|++|+| |+.+|++|++|.-|.||
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEE
Confidence 45555655667999999999 899999999999999999998887776 4567899999999 99999999999999999
Q ss_pred eCCCceEEEE-ecCCCCEEEEEEcc
Q 002086 623 SISDRLVVDW-TDLHEMVTAACYTP 646 (969)
Q Consensus 623 Dl~~~~~~~~-~~~~~~V~sv~fsp 646 (969)
.+..++++.. .+|..+|..|+|.|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999887765 77889999999997
No 230
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=2.3e-08 Score=119.96 Aligned_cols=119 Identities=26% Similarity=0.493 Sum_probs=101.6
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.||++.|..+.|+.||++++|+|.|.++|+|++++++...
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------------------------- 211 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------------------------- 211 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------------------------
Confidence 588999999999999999999999999999999999765432
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecC-CCeEEEEEec
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHN-DYVTCIQFNP 604 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~-~~V~sv~fsp 604 (969)
....+|+..|+.++|.+. .++|++.|-+.++|+....+.....+|. ..|+.++..+
T Consensus 212 ----------------------~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~ 268 (967)
T KOG0974|consen 212 ----------------------CTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI 268 (967)
T ss_pred ----------------------cccccccceeEEEEeccc-eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC
Confidence 134589999999999997 9999999999999977654444222554 5799999998
Q ss_pred CCCCEEEEEECCCeEEEEeCCC
Q 002086 605 MDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
+...+++++.|+.+++||+..
T Consensus 269 -~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 269 -GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -CceEEEeeccCcchhhhhhhc
Confidence 888999999999999999854
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.13 E-value=5.5e-09 Score=108.69 Aligned_cols=113 Identities=16% Similarity=0.391 Sum_probs=91.4
Q ss_pred CCCCEEEEEecC-CcEEEE--EeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---CeEEEEeCCC
Q 002086 553 HLDDVLDLSWSR-SHLLLS--SSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD---AKVRIWSISD 626 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~S--gs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D---g~I~IWDl~~ 626 (969)
..++|.+++|+| ++.|++ |..++.|.+||++ ++.+..++ ...+..|.|+| ++++|++++.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 345799999999 666543 4577899999997 66666664 56788999999 99999998754 6799999999
Q ss_pred ceEEEEecCCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCc
Q 002086 627 RLVVDWTDLHEMVTAACYTPDGQNALIGSH------KGSCRLYSIEDSK 669 (969)
Q Consensus 627 ~~~~~~~~~~~~V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~ 669 (969)
.+.+....+.. ++.++|+|+|++|+++.. |..++||+.....
T Consensus 135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 88887776654 789999999999998764 7889999986543
No 232
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=2.4e-09 Score=113.89 Aligned_cols=259 Identities=19% Similarity=0.310 Sum_probs=169.7
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceE-----EEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV-----MSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~-----l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
-.+-|.++.|...|.+||||..+|.|.++.-..... ...++.+..
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep------------------------------ 73 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP------------------------------ 73 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCc------------------------------
Confidence 356789999999999999999999999987542110 000000000
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc---------------
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--------------- 586 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--------------- 586 (969)
..++ + .-..-...|..+.|.+ ...++....|++|++|.+....
T Consensus 74 ----EFDY--------------L-kSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~ 134 (433)
T KOG1354|consen 74 ----EFDY--------------L-KSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPG 134 (433)
T ss_pred ----ccch--------------h-hhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCC
Confidence 0000 0 0011235678889986 4678889999999999875321
Q ss_pred --------------------EEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCC----
Q 002086 587 --------------------CLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLH---- 636 (969)
Q Consensus 587 --------------------~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~---- 636 (969)
+.+++ +|...|.+|.++. +...++++ .|-.|.+|.+.-. .++....+.
T Consensus 135 ~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeL 212 (433)
T KOG1354|consen 135 TITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEEL 212 (433)
T ss_pred ccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHH
Confidence 11122 5888899999997 77777776 5788999998532 234444333
Q ss_pred -CCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc--------cccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 637 -EMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT--------KKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 637 -~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~--------~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
.-|++..|+|. .+.|+-.+..|+|++.|++...+.....-.+.. ....-...|..+.|++.| .++++ -
T Consensus 213 teVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryils-R 290 (433)
T KOG1354|consen 213 TEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILS-R 290 (433)
T ss_pred HHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEE-e
Confidence 45899999996 567778899999999999955432111000000 011223568899999987 55554 3
Q ss_pred CCCcEEEEeCC---cceEEEEeecCC----------CC---eEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 707 ADSRIRILDGL---DIVHKFRGFRNT----------SS---QISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 707 ~Dg~I~IwD~~---~~~~~~~~~~~~----------~~---V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.--+|++||+. .....+..|... .. -..++|+-++.+++||+....+++|++..+
T Consensus 291 Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 291 DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 34689999963 334444443221 11 246889999999999999999999997663
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.11 E-value=7.2e-09 Score=107.84 Aligned_cols=148 Identities=14% Similarity=0.299 Sum_probs=100.4
Q ss_pred EEEEEecCCCCEEEEEEC----------CCeEEEEeC--CCceEEEE-ecCCCCEEEEEEccCCCEEEEE--eCCCcEEE
Q 002086 598 TCIQFNPMDDDYFISGSL----------DAKVRIWSI--SDRLVVDW-TDLHEMVTAACYTPDGQNALIG--SHKGSCRL 662 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~----------Dg~I~IWDl--~~~~~~~~-~~~~~~V~sv~fspdg~~Lasg--s~dg~I~I 662 (969)
..+.|++ .|++|+.-.. -+...+|.+ .......+ ....++|.+++|+|+|+.|++. ..+..|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3467777 6665554322 133445544 33333222 2234569999999999987654 45779999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC---CCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA---DSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~---Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
||++..... ......+..+.|+|+| .+|++++. .|.|.+||..+....... .+ ..++.++|+|
T Consensus 88 yd~~~~~i~-----------~~~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~-~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGKKIF-----------SFGTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF-EH-SDATDVEWSP 153 (194)
T ss_pred EcCcccEeE-----------eecCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc-cc-CcEEEEEEcC
Confidence 999732221 1234567889999998 67777653 467999998865554333 23 3478999999
Q ss_pred CCCEEEEEeC------CCcEEEEEcCC
Q 002086 740 DGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 740 dg~~LaSgs~------Dg~I~IWdl~t 760 (969)
||++|+++.. |+.++||++..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEecC
Confidence 9999999875 78899999963
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.10 E-value=4e-08 Score=104.17 Aligned_cols=197 Identities=16% Similarity=0.226 Sum_probs=136.5
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECC-CCcEEEEee---cCCCeEEEEEecCCCCEEEE-EECCCeEEEEeCCCc
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDME-TKSCLKLFA---HNDYVTCIQFNPMDDDYFIS-GSLDAKVRIWSISDR 627 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~-t~~~i~~~~---h~~~V~sv~fsp~~~~~L~s-gs~Dg~I~IWDl~~~ 627 (969)
...+|.+|.+.++..++. ..+.|.||... ..+.+..+. ....+.+++-+. +..+|+. |-.-|.|+|-|+...
T Consensus 93 f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhc
Confidence 457899999987544433 45789999988 455555552 223333333322 2333433 455689999999876
Q ss_pred eE---EEEecCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 628 LV---VDWTDLHEMVTAACYTPDGQNALIGSHKGS-CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 628 ~~---~~~~~~~~~V~sv~fspdg~~Lasgs~dg~-I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
+. .....|...|.|++++-+|..+|+++..|+ |||||..++....... .......|.+++|+|+. .+|+
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~iy~iaFSp~~-s~La 242 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRADIYCIAFSPNS-SWLA 242 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchheEEEEEeCCCc-cEEE
Confidence 55 778899999999999999999999999995 7999999998865532 24456789999999988 8999
Q ss_pred EEeCCCcEEEEeCCcce---E-------------E--------EEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 704 VTSADSRIRILDGLDIV---H-------------K--------FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~---~-------------~--------~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+++..|+|.|+.+.... . + .+.+-..+...-++|-.+.+.++..+.||..+-+.+.
T Consensus 243 vsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 99999999999744211 0 0 0111123344456676665666666677876655554
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.09 E-value=8e-07 Score=101.21 Aligned_cols=250 Identities=14% Similarity=0.191 Sum_probs=161.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeC----CCcEEEEeccc--ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 451 EGSIWTIKFSLDARFLASAGE----DRVIHVWEVQE--CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~----DgtVrIWDl~t--g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
.....-|+++|++++|.++.. ++.|..|.+.. +++...
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~------------------------------------ 79 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL------------------------------------ 79 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE------------------------------------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe------------------------------------
Confidence 445567889999999988877 56888888875 333221
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCC-CcEEE---Eeec-----
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDMET-KSCLK---LFAH----- 593 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t-~~~i~---~~~h----- 593 (969)
............+++++ +.+|+++. .+|+|.++++.. +.... .+.|
T Consensus 80 -----------------------~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~ 136 (345)
T PF10282_consen 80 -----------------------NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGP 136 (345)
T ss_dssp -----------------------EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred -----------------------eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCC
Confidence 01111233445688888 77777776 589999999987 43332 2222
Q ss_pred ------CCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCCCce--EEE----EecCCCCEEEEEEccCCCEEEEEe-CCCc
Q 002086 594 ------NDYVTCIQFNPMDDDYFISGSL-DAKVRIWSISDRL--VVD----WTDLHEMVTAACYTPDGQNALIGS-HKGS 659 (969)
Q Consensus 594 ------~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~~~--~~~----~~~~~~~V~sv~fspdg~~Lasgs-~dg~ 659 (969)
.....++.|+| +++++++... ...|.+|++.... +.. ..........++|+|+++++.+.. .++.
T Consensus 137 ~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT 215 (345)
T ss_dssp STTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred cccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence 24578999999 8887777543 4579999997654 322 234456789999999999887655 5778
Q ss_pred EEEEEcC--CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEe-ecCCCCeE
Q 002086 660 CRLYSIE--DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRG-FRNTSSQI 733 (969)
Q Consensus 660 I~IwDl~--~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~-~~~~~~V~ 733 (969)
|.+|++. .+.+.....+...............|+++|++..++++....+.|.+|++.. ....... ........
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr 295 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPR 295 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCcc
Confidence 9999998 5544333333222111122236889999999955555556778899999621 2222222 22234468
Q ss_pred EEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 002086 734 SAAFNADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 734 sl~fspdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
.+.|+|+|++|+++.. ++.|.+|+++.
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 8999999999998875 56899998853
No 236
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.08 E-value=3.2e-09 Score=113.12 Aligned_cols=343 Identities=13% Similarity=0.185 Sum_probs=195.1
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccc-cccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSK-SLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~-~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
+..+.||.+.|++........-+.+.++|.++..|+-+ ...+|.. +.+.....+ .++.+..+...++-+...
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps--I~~~mP~~~--~~~~y~~e~~~L~vg~~n--- 89 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS--IYHYMPSPC--SAMEYVSESRRLYVGQDN--- 89 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch--hhhhCCCCc--eEeeeeccceEEEEEEec---
Confidence 56778999999999854444445566788888777522 1112211 111111111 111111122111111000
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEee
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~ 489 (969)
+....+. --.++..+...+....|...|..+-|+...+++++.+.|..+.---.+.+..+..+
T Consensus 90 ----------gtvtefs-------~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y 152 (404)
T KOG1409|consen 90 ----------GTVTEFA-------LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY 152 (404)
T ss_pred ----------ceEEEEE-------hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce
Confidence 0000010 01144455566677899999999999999999999999987643333333222110
Q ss_pred cCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEE
Q 002086 490 EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLL 569 (969)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~ 569 (969)
... +.... ..+.+. ......|.+.|+.+.+-+
T Consensus 153 ~~~--------~~~t~--------------------------------~~~d~~---~~fvGd~~gqvt~lr~~~----- 184 (404)
T KOG1409|consen 153 NFE--------TPASA--------------------------------LQFDAL---YAFVGDHSGQITMLKLEQ----- 184 (404)
T ss_pred Eee--------ccCCC--------------------------------CceeeE---EEEecccccceEEEEEee-----
Confidence 000 00000 000000 112233555555555433
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC--ceEEEEecCCCCEEEEEEcc
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD--RLVVDWTDLHEMVTAACYTP 646 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~--~~~~~~~~~~~~V~sv~fsp 646 (969)
..-..+..+ +|.+.+++++|.+ ....|++|..|..|.+||+-. +.....++|.+.|..+.+.+
T Consensus 185 -------------~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 185 -------------NGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred -------------cCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 122233334 8999999999999 889999999999999999954 56677888999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeee-------------------------ecccccCCCCCeEEEEEcCCCCce
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVD-------------------------FQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-------------------------~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
.-+.+++++.||.|.+|++.........-.. +..+.-.+.+...+...+. +...
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s-~~~~ 329 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS-NRSS 329 (404)
T ss_pred hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc-Cccc
Confidence 8899999999999999999755432110000 0000000111111111111 1123
Q ss_pred EEEEeCCCcEEEEeCC-------cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 702 VLVTSADSRIRILDGL-------DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~-------~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+.+-+..-.+|+-|.- +.......|.-...|+.+.+..+-.+|+|++.|..|+|||+..
T Consensus 330 ~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 330 YPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 3333444455655511 1111223345556789999988889999999999999999975
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.07 E-value=2e-08 Score=117.26 Aligned_cols=203 Identities=16% Similarity=0.223 Sum_probs=140.3
Q ss_pred CCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCC-
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDA- 617 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg- 617 (969)
+.....+..+...+....|+| +++|+.++.+ ..|++||+.+++......+...+.+++|+| +++.|+ +.+.++
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~ 257 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGN 257 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCC
Confidence 344455666777899999999 7788777654 479999999988776666777778899999 887665 444444
Q ss_pred -eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE
Q 002086 618 -KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK-G--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 618 -~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d-g--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
.|++||+.++....+..+........|+|+|+.|+..+.. + .|+++|+.+++.... ..+...+..+.
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l---------~~~~~~~~~~~ 328 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL---------TFRGGYNASPS 328 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---------ecCCCCccCeE
Confidence 5999999988776666655555678999999988876543 3 578888877654321 12334567788
Q ss_pred EcCCCCceEEEEeCCC---cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcC
Q 002086 694 FSPSNPSEVLVTSADS---RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS---QVYVWKRE 759 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg---~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg---~I~IWdl~ 759 (969)
|+|++ .+++.++.++ .|.+||.......... .........|+|||++|+..+.++ .+++.+..
T Consensus 329 ~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 329 WSPDG-DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ECCCC-CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 99998 6677666665 7888886653222111 112234568999999988877764 34454443
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.07 E-value=1.7e-08 Score=117.71 Aligned_cols=190 Identities=17% Similarity=0.135 Sum_probs=132.4
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..|...+...+|+|||++|+.+..+ ..|++||+.+++...
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---------------------------------- 228 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---------------------------------- 228 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------------------------------
Confidence 4455677789999999999999887654 479999988764432
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCC--cEEEEECCCCcEEEEeecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDK--TVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V 597 (969)
+..+.+.+.++.|+| ++.|+ +.+.++ .|++||+.+++......+....
T Consensus 229 ----------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 280 (417)
T TIGR02800 229 ----------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGID 280 (417)
T ss_pred ----------------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCC
Confidence 111233445678998 55554 455444 5999999988776666665566
Q ss_pred EEEEEecCCCCEEEEEECC-C--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSLD-A--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---SCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~D-g--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---~I~IwDl~~~~~~ 671 (969)
....|+| ++..|+.++.. + .|+++|+.+++...+......+..+.|+|+|++|+.+..++ .|.+||+.++...
T Consensus 281 ~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 281 TEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred CCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 6789999 88888766543 3 58888988887766665666678889999999999888776 7899998875432
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
... .........|+|++ ..|+..+.+
T Consensus 360 ~l~----------~~~~~~~p~~spdg-~~l~~~~~~ 385 (417)
T TIGR02800 360 VLT----------DTGLDESPSFAPNG-RMILYATTR 385 (417)
T ss_pred Ecc----------CCCCCCCceECCCC-CEEEEEEeC
Confidence 211 01123345799998 455555443
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1e-08 Score=111.18 Aligned_cols=204 Identities=17% Similarity=0.245 Sum_probs=153.7
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
...-++.|-.++.. || .|++|-.+|.+.+|....+....
T Consensus 101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hs--------------------------------------- 139 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHS--------------------------------------- 139 (412)
T ss_pred cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCcccc---------------------------------------
Confidence 44567788888776 33 68888899999999987543210
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCC--CcEEEEECCCCcEEEEe----------e
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMD--KTVRLWDMETKSCLKLF----------A 592 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~D--gtV~IWDl~t~~~i~~~----------~ 592 (969)
.++..+..+ ..+..+.-++ ...+++|+.. ..+.|||+++.+.+..- .
T Consensus 140 ------------------s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 140 ------------------SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR 200 (412)
T ss_pred ------------------ccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence 011111111 3455555555 4677779999 89999999988544332 1
Q ss_pred cCCCeEEEEEecCC--CCEEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 593 HNDYVTCIQFNPMD--DDYFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 593 h~~~V~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
-.-.++++.|.+ . ...|+++..-+.|++||.+.+. +..+.-...+++++...|.++++++|..-|.+..||++.+
T Consensus 201 VPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 201 VPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 223567889988 5 6799999999999999998653 3444445688999999999999999999999999999998
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI 719 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~ 719 (969)
+.... ...+..+.|.+|..+|.. .++++++-|..|||+|..+.
T Consensus 280 kl~g~-------~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 280 KLLGC-------GLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eeecc-------ccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccc
Confidence 86432 236778999999999987 79999999999999997663
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=9.4e-08 Score=108.06 Aligned_cols=273 Identities=11% Similarity=0.154 Sum_probs=168.1
Q ss_pred CEEEEEEeCCCCEEEEE-----eCC-----CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 453 SIWTIKFSLDARFLASA-----GED-----RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTg-----s~D-----gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+++|.|+|-|.+|.|= -.| ..+++|+++++.....+...........+.......
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-------------- 140 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-------------- 140 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhh--------------
Confidence 78999999999999872 122 346799999854433322211111111111111100
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC---cEEEE-----EeCCCcEEEEECCCCcEEEEee--
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS---HLLLS-----SSMDKTVRLWDMETKSCLKLFA-- 592 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~---~~L~S-----gs~DgtV~IWDl~t~~~i~~~~-- 592 (969)
...+......+....-....-.-|...|..+.++|+ ..+++ .+.-..|+||.+.....-...+
T Consensus 141 -------arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k 213 (566)
T KOG2315|consen 141 -------ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK 213 (566)
T ss_pred -------hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc
Confidence 001111112233322222222346788999999984 34443 3566789999887333222221
Q ss_pred --cCCCeEEEEEecCCCCEEEEEEC-----------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE--EeCC
Q 002086 593 --HNDYVTCIQFNPMDDDYFISGSL-----------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI--GSHK 657 (969)
Q Consensus 593 --h~~~V~sv~fsp~~~~~L~sgs~-----------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las--gs~d 657 (969)
....=..+.|++....+|+.++. ..+++++++.+..+..-....++|.++.|+|+++.|++ |-.-
T Consensus 214 sFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 214 SFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP 293 (566)
T ss_pred cccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEeccc
Confidence 12223456777633334443332 24688999887677777777899999999999987765 5567
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC---CCcEEEEeCCcceEEEEeecCCCCeEE
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA---DSRIRILDGLDIVHKFRGFRNTSSQIS 734 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~---Dg~I~IwD~~~~~~~~~~~~~~~~V~s 734 (969)
-.+.|||++..-.. ....++-.++-|+|.| .+++.++- -|.|-|||..+........ ...-+-
T Consensus 294 Akvtifnlr~~~v~-----------df~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--a~~tt~ 359 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVF-----------DFPEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKFK--AANTTV 359 (566)
T ss_pred ceEEEEcCCCCEeE-----------eCCCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhccccc--cCCceE
Confidence 78999999865432 2346677889999998 56666543 4789999977643332222 223456
Q ss_pred EEEeCCCCEEEEEeC------CCcEEEEEcCC
Q 002086 735 AAFNADGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~~LaSgs~------Dg~I~IWdl~t 760 (969)
+.|+|||.+|+|++. |+.|+||++..
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 899999999999875 78899999974
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=1.6e-08 Score=121.23 Aligned_cols=195 Identities=13% Similarity=0.193 Sum_probs=154.3
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE-----EEEEecCCCCEEEEEECCCeEEEEeCCCc-
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT-----CIQFNPMDDDYFISGSLDAKVRIWSISDR- 627 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~-----sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~- 627 (969)
+.|....+.. +..++.++.+..+.+||...+.......+..... -+.+++ +.-++++|+.-+.|.+|+....
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccC
Confidence 3344434433 6889999999999999999888777665554322 223444 6678999999999999998743
Q ss_pred eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 628 LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
....+.+|.+.|..+.++-+|.++++.++|.++++|++.+.+... ...-+|...|..++|.|. .+++++.
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fgHsaRvw~~~~~~n---~i~t~ge 236 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGFGHSARVWACCFLPN---RIITVGE 236 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------cccccccceeEEEEeccc---eeEEecc
Confidence 345688999999999999999999999999999999999987643 223689999999999995 8999999
Q ss_pred CCcEEEEeCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 708 DSRIRILDGLD-IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 708 Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|.+.++|+... ....+..|. ...+..++..++...++|++.||.+++|++...
T Consensus 237 dctcrvW~~~~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 237 DCTCRVWGVNGTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEEEecccceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999997432 222444443 345889999999999999999999999998764
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.1e-07 Score=111.63 Aligned_cols=204 Identities=13% Similarity=0.172 Sum_probs=135.5
Q ss_pred CCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCC
Q 002086 543 SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDA 617 (969)
Q Consensus 543 ~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg 617 (969)
.+.....+..+...+....|+| ++.|+..+.+ ..|.+||+.+++........+.+....|+| +++.|+ +...+|
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g 265 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDG 265 (430)
T ss_pred CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCC
Confidence 3444455666778899999999 7777766543 369999999988766555555666789999 888776 444555
Q ss_pred --eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEE
Q 002086 618 --KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692 (969)
Q Consensus 618 --~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l 692 (969)
.|++||+.++....+..+........|+|+|+.|+..+. +| .|+++++.+++..... . ........
T Consensus 266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt---~------~~~~~~~~ 336 (430)
T PRK00178 266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT---F------VGNYNARP 336 (430)
T ss_pred CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---c------CCCCccce
Confidence 588899999887766666666677899999998877654 33 5777888777643221 0 11223456
Q ss_pred EEcCCCCceEEEEe-CCC--cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC-C--cEEEEEcC
Q 002086 693 QFSPSNPSEVLVTS-ADS--RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED-S--QVYVWKRE 759 (969)
Q Consensus 693 ~fspd~~~~l~sgs-~Dg--~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D-g--~I~IWdl~ 759 (969)
.|+|++. .++..+ .++ .|.+||........-.. ........|+|||++|+..+.+ | .|+++++.
T Consensus 337 ~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 337 RLSADGK-TLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EECCCCC-EEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 8999984 555444 333 47888865432222111 1122356899999998876654 2 46666664
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.4e-07 Score=110.69 Aligned_cols=200 Identities=12% Similarity=0.089 Sum_probs=130.7
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..|...+....|+|||++|+..+.+ ..|.+||+.+++....
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l--------------------------------- 238 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI--------------------------------- 238 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc---------------------------------
Confidence 4455678889999999999998876643 3688889887654321
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCC--cEEEEECCCCcEEEEeecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDK--TVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V 597 (969)
....+.+....|+| ++.|+ +.+.++ .|++||+.+++......+....
T Consensus 239 -----------------------------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~ 289 (430)
T PRK00178 239 -----------------------------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAID 289 (430)
T ss_pred -----------------------------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCc
Confidence 00112233578998 66665 455555 6888899998876665666667
Q ss_pred EEEEEecCCCCEEEEEEC-CC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSL-DA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK-G--SCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~-Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d-g--~I~IwDl~~~~~~ 671 (969)
....|+| ++..|+..+. +| .|+++|+.+++...+...........|+|+|++|+....+ + .|.+||+.+++..
T Consensus 290 ~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 290 TEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred CCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence 7789999 8887766554 33 5888888887765544333334567899999999876643 3 5888999887643
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC--cEEEEeCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--RIRILDGL 717 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--~I~IwD~~ 717 (969)
... .. .......|+|++...+++...++ .|++++..
T Consensus 369 ~lt--------~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 369 ILT--------DT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred Ecc--------CC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 221 01 11124579999844444444443 35666653
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.1e-07 Score=111.93 Aligned_cols=220 Identities=19% Similarity=0.160 Sum_probs=135.8
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCC-C--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGED-R--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~D-g--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++.....
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt--------------------------------- 258 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT--------------------------------- 258 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec---------------------------------
Confidence 355567789999999999988876543 3 5788888766542210
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCCc--EEEEECCCCcEEEEeecCCCeE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDKT--VRLWDMETKSCLKLFAHNDYVT 598 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~Dgt--V~IWDl~t~~~i~~~~h~~~V~ 598 (969)
.+.+ ......|+| ++.|+ +.+.++. |.+||+.+++......+.....
T Consensus 259 --------------------------~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~ 309 (448)
T PRK04792 259 --------------------------SFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT 309 (448)
T ss_pred --------------------------CCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc
Confidence 0111 123468998 66554 4566665 8888999888766666666778
Q ss_pred EEEEecCCCCEEEEEEC-CC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceee
Q 002086 599 CIQFNPMDDDYFISGSL-DA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQ 672 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~-Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~ 672 (969)
...|+| ++..|+..+. ++ .|+++|+.+++...+..........+|+|+|++|+..+. ++ .|.++|+.+++...
T Consensus 310 ~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 310 EPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred ceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 889999 8887766554 33 477778887776554433333445789999999887654 34 45667887776432
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc--EEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR--IRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
.. .. .......|+|++...+++...++. +++++..... ........+.+...+|+|
T Consensus 389 lt--------~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~-~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 LT--------ST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF-KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cc--------CC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCCCCCcCCCccCC
Confidence 11 00 011234799999555555555544 6666643221 111122233455666766
No 245
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.94 E-value=3.4e-07 Score=104.72 Aligned_cols=194 Identities=16% Similarity=0.236 Sum_probs=134.7
Q ss_pred cEE-EEEeCCCcEEEEECCCCcEEEEeecCCCe-EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEE
Q 002086 566 HLL-LSSSMDKTVRLWDMETKSCLKLFAHNDYV-TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAAC 643 (969)
Q Consensus 566 ~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V-~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~ 643 (969)
+++ ++-..++.|.+.|..+.+.+..+.....+ ..+.|+| +++++++++.||.|.++|+.+++++...........++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 444 45667899999999999999999765554 4577888 99999999999999999999999998888888899999
Q ss_pred EccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-E
Q 002086 644 YTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV-H 721 (969)
Q Consensus 644 fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~-~ 721 (969)
+++||++++++. ..+.+.++|.++.+............ ......+..+..+|..+.+++..-..+.|.+.|..... .
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T-TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccc-cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999998765 68999999999988765543321111 12456788888898875555555556888888855432 1
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISA-SEDSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSg-s~Dg~I~IWdl~t~ 761 (969)
...............|+|+++|++.+ ..+..|-++|..+.
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 22233334456788999999987765 45678999999874
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=1.2e-08 Score=116.64 Aligned_cols=250 Identities=15% Similarity=0.218 Sum_probs=173.7
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
.....|+.|+....|+|.||.||.++|-.+.+...-....+ . ...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----l-------------------------------aa~ 58 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG----L-------------------------------AAA 58 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc----c-------------------------------ccc
Confidence 34567999999999999999999999998875322110000 0 000
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMD 606 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~ 606 (969)
. .-..-+++.||.+.|.-+.|+. .+.|-|+..+|-|.+|-+-.+.-...+ .....|.+++|+. +
T Consensus 59 s-----------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-d 126 (1189)
T KOG2041|consen 59 S-----------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-D 126 (1189)
T ss_pred c-----------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-C
Confidence 0 0001136889999999999998 788889999999999998877644332 4567899999998 9
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee---eeeeeeeccccc
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH---QLNQVDFQTKKK 683 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~---~~~~~~~~~~~~ 683 (969)
|..|.....||.|.+=.+....+....-.......+.|++|.+.++.+-.+|.+.+||....-.. ....+.......
T Consensus 127 G~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s 206 (1189)
T KOG2041|consen 127 GTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS 206 (1189)
T ss_pred CcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec
Confidence 99999999999999888877665433222233567899999999999999999999998764221 111122222223
Q ss_pred CCCCCeEEEEEc--------CCCCceEEEEeCCCcEEEEeCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 684 SSTRKITGFQFS--------PSNPSEVLVTSADSRIRILDGLD-IVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 684 ~h~~~It~l~fs--------pd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
.....|..+.|. |+. ..++++..+|.+.|-...+ ....+.. ..-.+..+.|+++|..|+.++.|
T Consensus 207 ~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 207 NFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence 333446666664 344 5789999999988875332 2222211 22457789999999999999875
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.92 E-value=8.5e-08 Score=101.71 Aligned_cols=260 Identities=17% Similarity=0.202 Sum_probs=171.8
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEE-EEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLA-SAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~La-Tgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
|..++++.+-+.- -+.|.-|.|..|..+++ ....|+.|.+|++..-+-..
T Consensus 35 d~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c---------------------------- 85 (447)
T KOG4497|consen 35 DSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC---------------------------- 85 (447)
T ss_pred ccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE----------------------------
Confidence 4444444443332 46788899998887554 45779999999987543322
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEeec
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLFAH 593 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~~h 593 (969)
.+....+++..++|+| + ..|.+...|-.|.+|.+.+.++....--
T Consensus 86 ---------------------------------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p 132 (447)
T KOG4497|consen 86 ---------------------------------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP 132 (447)
T ss_pred ---------------------------------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc
Confidence 3444567889999999 5 6777888999999999999888776655
Q ss_pred CCCeEEEEEecCCCCEEEEEEC------------------------------------CCeEEEEeCCCceEEEEecCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSL------------------------------------DAKVRIWSISDRLVVDWTDLHE 637 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~------------------------------------Dg~I~IWDl~~~~~~~~~~~~~ 637 (969)
...+..++|+| ++++.+.++. +..+.+||---...+......-
T Consensus 133 K~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l 211 (447)
T KOG4497|consen 133 KTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL 211 (447)
T ss_pred ccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeecc
Confidence 56678899999 8887776653 2234555543332223333445
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--------------------------------------------
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL-------------------------------------------- 673 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~-------------------------------------------- 673 (969)
.+..++|+|.+++|++|+.|+.++|.+--+.+....
T Consensus 212 G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 212 GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE 291 (447)
T ss_pred ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence 688999999999999999999888754322111000
Q ss_pred ---------eeeee-----cccccCCCCCeEEEEEcCCCCceEEEEeC--CCcEEEEeCCcceEEEEeecCCCCeEEEEE
Q 002086 674 ---------NQVDF-----QTKKKSSTRKITGFQFSPSNPSEVLVTSA--DSRIRILDGLDIVHKFRGFRNTSSQISAAF 737 (969)
Q Consensus 674 ---------~~~~~-----~~~~~~h~~~It~l~fspd~~~~l~sgs~--Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~f 737 (969)
..+.+ ........-.+.-++|++|. .++++-.. -..+-+||+.+... ........+|....|
T Consensus 292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l-~avLiQk~piraf~W 369 (447)
T KOG4497|consen 292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL-HAVLIQKHPIRAFEW 369 (447)
T ss_pred chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh-hhhhhhccceeEEEe
Confidence 00000 01112234456779999986 44444322 24589999765432 112223456889999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 738 NADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 738 spdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+|....|+.+.....+++|.....
T Consensus 370 dP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CCCCceEEEEcCCceEEEEcCCCc
Confidence 999988888888888999998753
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.8e-07 Score=110.12 Aligned_cols=200 Identities=16% Similarity=0.216 Sum_probs=128.0
Q ss_pred eEeccCCCCEEEEEecC-CcEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEE-EECCCe--EE
Q 002086 548 CSFIGHLDDVLDLSWSR-SHLLLSSSM-DK--TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFIS-GSLDAK--VR 620 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~-~~~L~Sgs~-Dg--tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~s-gs~Dg~--I~ 620 (969)
..+..+...+....|+| ++.|+..+. ++ .|.+||+.+++........+......|+| +++.|+. ...+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence 34555667888999999 677776654 33 58899999887655443344455789999 8887654 566664 88
Q ss_pred EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
+||+.+++...+..+.......+|+|||+.|+..+. ++ .|+++|+.+++..... ..........|+|+
T Consensus 290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt---------~~g~~~~~~~~SpD 360 (448)
T PRK04792 290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT---------FEGEQNLGGSITPD 360 (448)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe---------cCCCCCcCeeECCC
Confidence 889998887776666566778899999998877654 33 5677787776643221 01122334689999
Q ss_pred CCceEEEEeCCCc--EEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC-Cc--EEEEEcC
Q 002086 698 NPSEVLVTSADSR--IRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED-SQ--VYVWKRE 759 (969)
Q Consensus 698 ~~~~l~sgs~Dg~--I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D-g~--I~IWdl~ 759 (969)
+..++++...++. |.++|.......... . ........|+|||++|+..+.+ |. |++++++
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~lt-~-~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQVLT-S-TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeEEcc-C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 9544444444443 555675443222111 1 1112245799999988766543 33 6777764
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.91 E-value=3.6e-06 Score=94.59 Aligned_cols=268 Identities=14% Similarity=0.058 Sum_probs=164.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeC----------CCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGE----------DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~----------DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|..+++.+.++..-..+-- + ++|||+.|+.+.. +..|.|||+.+++.+..+.....+..
T Consensus 31 ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~------- 101 (352)
T TIGR02658 31 TIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF------- 101 (352)
T ss_pred EEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh-------
Confidence 457777888888876555543 5 9999997776654 78999999999988875442111000
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-C-CCcEEEEE
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-M-DKTVRLWD 581 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~-DgtV~IWD 581 (969)
. ....-..+++++ +++|+... . +..|-+.|
T Consensus 102 --------------------------------------------~---~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD 134 (352)
T TIGR02658 102 --------------------------------------------L---VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVD 134 (352)
T ss_pred --------------------------------------------h---ccCccceEEECCCCCEEEEecCCCCCEEEEEE
Confidence 0 011223577888 67777665 3 79999999
Q ss_pred CCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEE----EEecC-CCCE-EEEEEcc-CCCEEEE
Q 002086 582 METKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVV----DWTDL-HEMV-TAACYTP-DGQNALI 653 (969)
Q Consensus 582 l~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~----~~~~~-~~~V-~sv~fsp-dg~~Las 653 (969)
+.+++.+..+.-.+...-+..+ ...+.+.+.||......+.. ++.. ..+.. ...+ ..-.|.+ +|.++.+
T Consensus 135 ~~~~kvv~ei~vp~~~~vy~t~---e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v 211 (352)
T TIGR02658 135 LEGKAFVRMMDVPDCYHIFPTA---NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP 211 (352)
T ss_pred CCCCcEEEEEeCCCCcEEEEec---CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence 9999999988654433333332 22222334566655544432 2211 11111 0000 0014455 7887777
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeecccc----cCCCCCeEEEEEcCCCCceEEEEe---------CCCcEEEEeCCcce
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQTKK----KSSTRKITGFQFSPSNPSEVLVTS---------ADSRIRILDGLDIV 720 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~~~----~~h~~~It~l~fspd~~~~l~sgs---------~Dg~I~IwD~~~~~ 720 (969)
..+ |.|.+.|+..........+...... ......+.-+++++++...++... ..+.|.++|..+..
T Consensus 212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 776 9999999766554333222221111 224455566999999855444342 22579999977655
Q ss_pred EEEEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCCc
Q 002086 721 HKFRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHRN 763 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~~ 763 (969)
...... -...+..++|+|||+ +|++.+ .++.|.+.|+.+.+.
T Consensus 291 vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 291 RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 544433 234688999999999 887666 578899999998543
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=7.9e-08 Score=108.42 Aligned_cols=183 Identities=11% Similarity=0.196 Sum_probs=144.8
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
+|..++.+..|.--.+.|++|..++-..+|++|+.||.|-.||..+.+.+..+..... + ..
T Consensus 161 NLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v------------------~s 221 (703)
T KOG2321|consen 161 NLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-V------------------NS 221 (703)
T ss_pred EccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc-c------------------CC
Confidence 7888889999998889999999999999999999999999999987665554321100 0 00
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecC-
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHN- 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~- 594 (969)
.........|+++.|.. +-.+++|..+|.|.|||+++.+++..-.|.
T Consensus 222 -------------------------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 222 -------------------------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred -------------------------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence 00111234599999998 788999999999999999999988887665
Q ss_pred -CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 595 -DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 595 -~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
-+|..+.|.+.++.--+.......++|||-.+++..........+..+|+-|++.+++++-.++.+..|-+....
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 578999998843333333344577999999999999888888889999999999999999999988888776543
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.86 E-value=5.6e-08 Score=103.86 Aligned_cols=251 Identities=16% Similarity=0.229 Sum_probs=176.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
..+++.++||.+.|++...-|...-+++.+.|.++|||--.+ ++.-..
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps------------------------------- 62 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS------------------------------- 62 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-------------------------------
Confidence 345677899999999999999888899999999999996432 111000
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC----CcEEEEe-ec
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET----KSCLKLF-AH 593 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t----~~~i~~~-~h 593 (969)
....-..+++++.+.. ...|+.|-..|++.-+.+.. ....+.+ .|
T Consensus 63 -----------------------------I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 63 -----------------------------IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred -----------------------------hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 0111235677888887 67888888899998886643 2233333 79
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
...|..+-|+- ....+++.+.|..+.---.+.+..+.-+......+++.+.-. +..+|...|.|.+..+....+.
T Consensus 114 ~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~-- 188 (404)
T KOG1409|consen 114 QARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQ-- 188 (404)
T ss_pred hcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCc--
Confidence 99999999987 788999999988765444444433221111111122222211 5666777777777666544433
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
+.....+|...++++.|.+.. ..+++|..|..+.+||+. .....+..+.|...|..+..-+--+.|+++++||.
T Consensus 189 ----~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 189 ----LITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred ----eEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 223448999999999999976 899999999999999954 33344555666777888887778889999999999
Q ss_pred EEEEEcCCC
Q 002086 753 VYVWKREEH 761 (969)
Q Consensus 753 I~IWdl~t~ 761 (969)
|.+|+.+..
T Consensus 264 i~~w~mn~~ 272 (404)
T KOG1409|consen 264 IVVWNMNVK 272 (404)
T ss_pred EEEEeccce
Confidence 999999864
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.82 E-value=3.1e-07 Score=96.49 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=135.6
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEE--Ee-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EE-
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLK--LF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VV- 630 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~--~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~- 630 (969)
..++.|++ +..++++-.+|.+.+-+.......+ .. .|..+++...|+..+.+++++|+.|+.+..||++... .+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778887 7789999999999866665555544 23 7999999999998788999999999999999999332 22
Q ss_pred -EEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 631 -DWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDS-KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 631 -~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~-~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
....|...|.+|.-+| .+.++++|+.|..|++||.++- +.+.. ....+.|..+.++|.....+++++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---------~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---------AKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc---------CccccceEEEEecchhhhHHHHHHH
Confidence 2345667788888776 4779999999999999999953 32211 3345889999999976556677777
Q ss_pred CCcEEEEeCCcceEE----EEe-ecCCCCeEEEEEeCCCCEEEEEe-CCCcEE-EEEcCC
Q 002086 708 DSRIRILDGLDIVHK----FRG-FRNTSSQISAAFNADGKYIISAS-EDSQVY-VWKREE 760 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~----~~~-~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~-IWdl~t 760 (969)
-.-.+|.+....... +.. ..|..-+..-.|.....+|+||+ .|..|+ +|-.-+
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 777777774432222 222 22333344445544345788865 366644 665444
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.82 E-value=1e-05 Score=92.18 Aligned_cols=199 Identities=14% Similarity=0.239 Sum_probs=131.8
Q ss_pred CEEEEEecC-CcEEEEEeC----CCcEEEEECCCC--cEE--EEee-cCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeC
Q 002086 556 DVLDLSWSR-SHLLLSSSM----DKTVRLWDMETK--SCL--KLFA-HNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSI 624 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~----DgtV~IWDl~t~--~~i--~~~~-h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl 624 (969)
....+++++ +++|++... ++.|..|++... .+. .... .......++++| ++.+|+++. .+|.|.++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEc
Confidence 344577787 777777766 578999988764 332 2233 455667899999 888888776 4899999999
Q ss_pred CC-ceEEEE---ec-----------CCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCc--eeeeeeeeecccccCCC
Q 002086 625 SD-RLVVDW---TD-----------LHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSK--LHQLNQVDFQTKKKSST 686 (969)
Q Consensus 625 ~~-~~~~~~---~~-----------~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~--~~~~~~~~~~~~~~~h~ 686 (969)
.. +.+... .. ......++.|+|+|+++++.. ....|.+|++.... +.....+ .....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-----~~~~G 191 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-----KVPPG 191 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-----ECSTT
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-----ccccC
Confidence 86 433322 21 124478999999999888765 45689999998765 3322211 13456
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--cce----EEEEee----cCCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGL--DIV----HKFRGF----RNTSSQISAAFNADGKYIISASE-DSQVYV 755 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--~~~----~~~~~~----~~~~~V~sl~fspdg~~LaSgs~-Dg~I~I 755 (969)
.....+.|+|++...+++.-.++.|.+++.. ... ...... ........+.++|||++|+++.. .+.|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 6788999999986666677778889999855 221 111111 11225678999999999887764 667999
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|+++.
T Consensus 272 f~~d~ 276 (345)
T PF10282_consen 272 FDLDP 276 (345)
T ss_dssp EEECT
T ss_pred EEEec
Confidence 99954
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.79 E-value=9.5e-07 Score=100.85 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=116.6
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTA 641 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~s 641 (969)
..++-|...|.|.+|++..++....+ .|.+.|.++.++. +-..|.+++.|+.+..|+.....+.. +......+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 57888899999999999999988777 6999999999987 78899999999999999999987665 4455677999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC-----CCceEEEEeCCCcEEEEe
Q 002086 642 ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS-----NPSEVLVTSADSRIRILD 715 (969)
Q Consensus 642 v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd-----~~~~l~sgs~Dg~I~IwD 715 (969)
++++|||..+++++ +.|++||+++.+....+ .+|.++|.++.|.-. |..+|.+...+.-|.+|-
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~f--------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITF--------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEe--------cCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 99999999999886 58999999999876554 789999999999876 433444445566677775
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.78 E-value=2.4e-08 Score=124.21 Aligned_cols=197 Identities=17% Similarity=0.266 Sum_probs=143.5
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCc-cCcccccccCCCCCcc-CCCCCCCCCccccc
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNL-TPIHPSLCNSSDKASS-LDGSSPNPPPEKKK 523 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~-~~v~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 523 (969)
.++.|-..|.++.-+|...+.+||+.||.|++|....++.+..+.... ..+..+.+...++... .+|
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~----------- 2271 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG----------- 2271 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeecc-----------
Confidence 355667788999999989999999999999999999888776543221 2222222222221111 111
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe---CCCcEEEEECCCCc--EEEEeecCCCeE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS---MDKTVRLWDMETKS--CLKLFAHNDYVT 598 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs---~DgtV~IWDl~t~~--~i~~~~h~~~V~ 598 (969)
......|....+++...+.|.....++.|-. ..+++++ .++.+.+||..-.. .+....|.+.++
T Consensus 2272 ----------dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT 2340 (2439)
T KOG1064|consen 2272 ----------DGDLSLWQASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGAT 2340 (2439)
T ss_pred ----------CCceeecccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCce
Confidence 1112344556788888999999999999985 6677764 67899999975432 222258999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
++++-| ..++|++|+.+|.|++||++..++++.+.. ++ ...+|++|+..|.|+||++.........
T Consensus 2341 ~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2341 VLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 999999 899999999999999999998876654433 34 5679999999999999999887655443
No 256
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.78 E-value=5.9e-06 Score=106.32 Aligned_cols=206 Identities=14% Similarity=0.193 Sum_probs=135.9
Q ss_pred CEEEEEecC-CcEEEEE-eCCCcEEEEECCCCcEEEEeec-----------------CCCeEEEEEecCCCCEEEEEECC
Q 002086 556 DVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKSCLKLFAH-----------------NDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~~i~~~~h-----------------~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
....|++.+ ++.|+.+ ...+.|+++|+.++......+. -.....|+|+|.++.++++...+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 346788887 5655554 4567899999987664433210 12346899998556677777888
Q ss_pred CeEEEEeCCCceEEEEecC---------------CCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeee----
Q 002086 617 AKVRIWSISDRLVVDWTDL---------------HEMVTAACYTPDGQNAL-IGSHKGSCRLYSIEDSKLHQLNQV---- 676 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~---------------~~~V~sv~fspdg~~La-sgs~dg~I~IwDl~~~~~~~~~~~---- 676 (969)
+.|++||..++.+..+.+. -.....|+++|+++.|+ +-+.++.|++||+.++........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999988765443221 12356799999998554 556678999999987653211100
Q ss_pred -----eeccc----ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-EEEeec------------CCCCeEE
Q 002086 677 -----DFQTK----KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-KFRGFR------------NTSSQIS 734 (969)
Q Consensus 677 -----~~~~~----~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-~~~~~~------------~~~~V~s 734 (969)
.+... .........++++++++ .++++-..++.|++||...... .+.+.. .......
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 00000 00112234688999988 6788888899999999754322 222211 1124568
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
++++++|+++++-+.++.|++||+.+++
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 9999999999999999999999998854
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.78 E-value=2.9e-06 Score=95.23 Aligned_cols=273 Identities=16% Similarity=0.231 Sum_probs=172.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCC---------------cEEEEecccceEEEeecCCccC--cc-cccccCCCCCccCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDR---------------VIHVWEVQECEVMSMSEGNLTP--IH-PSLCNSSDKASSLDG 512 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~Dg---------------tVrIWDl~tg~~l~~~~~~~~~--v~-~~~~~~~~~~~~~~g 512 (969)
...|.-+.|+|.++||.|=+... .+.|||+.+|.++..+.+...+ .. .+.+...+...+
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A--- 147 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA--- 147 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh---
Confidence 34689999999999999976533 4999999999998876654433 11 111111111100
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeee----cCCCceeEeccCCCCEEEEEecCC---cEEEE-----EeCCCcEEEE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFS----LSEKPFCSFIGHLDDVLDLSWSRS---HLLLS-----SSMDKTVRLW 580 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~k~~~~l~gH~~~I~~l~fs~~---~~L~S-----gs~DgtV~IW 580 (969)
.. +.....++. +...++..+. ...|....|+|. ..|+. ...+++++||
T Consensus 148 -------------Rv-----v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~ 207 (561)
T COG5354 148 -------------RV-----VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRIL 207 (561)
T ss_pred -------------hh-----ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEE
Confidence 00 000111111 1122222332 356788888882 23443 3678899999
Q ss_pred ECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEE-----------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCC
Q 002086 581 DMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGS-----------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 581 Dl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs-----------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg 648 (969)
.+..+..+.+.. ....=..+.|++ .+++|++-- ....++|++++...+.......++|...+|.|.+
T Consensus 208 sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S 286 (561)
T COG5354 208 SIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLS 286 (561)
T ss_pred EccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccC
Confidence 998777765442 222234567777 666554321 1256889999866655555778999999999998
Q ss_pred CEEEE--EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC---CcEEEEeCCcceEEE
Q 002086 649 QNALI--GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD---SRIRILDGLDIVHKF 723 (969)
Q Consensus 649 ~~Las--gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D---g~I~IwD~~~~~~~~ 723 (969)
+.+++ |...-.+.++|++.+-.. ......=..+.|+|.. .++++++-| |.|-+||........
T Consensus 287 ~~F~vi~g~~pa~~s~~~lr~Nl~~-----------~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 287 SRFAVISGYMPASVSVFDLRGNLRF-----------YFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred CceeEEecccccceeecccccceEE-----------ecCCcccccccccCcc-cEEEEecCCccccceEEeccCCceEEE
Confidence 87765 457889999999887221 1223333456799988 677776544 679999976554444
Q ss_pred EeecCCCCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCC
Q 002086 724 RGFRNTSSQISAAFNADGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 724 ~~~~~~~~V~sl~fspdg~~LaSgs~------Dg~I~IWdl~t 760 (969)
..+.. ....-+.|+|||+++.+... |..|.||++..
T Consensus 355 ~~~~~-~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 355 GAFNG-LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEeec-CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 32222 23445789999999987753 78899999975
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=4.5e-05 Score=83.16 Aligned_cols=253 Identities=14% Similarity=0.266 Sum_probs=169.2
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEeccc--ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQE--CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~t--g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+-++.+.++=|+|+|++++|.++..+ |.|--|.++. |++......
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~------------------------------ 84 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ------------------------------ 84 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc------------------------------
Confidence 44678899999999999999988654 6777777663 444321000
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCC-CcE---EEEeecCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMET-KSC---LKLFAHND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t-~~~---i~~~~h~~ 595 (969)
.+.| .+-.-+++++ +++|+++.. -|.|.++-++. |.. +....|.+
T Consensus 85 ---------------------------~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g 135 (346)
T COG2706 85 ---------------------------TLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTG 135 (346)
T ss_pred ---------------------------ccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCC
Confidence 1111 1225677887 677777764 58899999865 433 34456666
Q ss_pred C----------eEEEEEecCCCCEEEEEECC-CeEEEEeCCCceEEEE----ecCCCCEEEEEEccCCCEEEEEe-CCCc
Q 002086 596 Y----------VTCIQFNPMDDDYFISGSLD-AKVRIWSISDRLVVDW----TDLHEMVTAACYTPDGQNALIGS-HKGS 659 (969)
Q Consensus 596 ~----------V~sv~fsp~~~~~L~sgs~D-g~I~IWDl~~~~~~~~----~~~~~~V~sv~fspdg~~Lasgs-~dg~ 659 (969)
. +.+..|.| ++++|++.... -.|.+|++..+.+... .......+.|.|+|++++..+.+ -+++
T Consensus 136 ~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st 214 (346)
T COG2706 136 SGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST 214 (346)
T ss_pred CCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE
Confidence 6 88999999 88888887542 4699999998765432 23446689999999999987655 5899
Q ss_pred EEEEEcCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE-eCCCcEEEEeCCcc--eEEEEee--cCCCCe
Q 002086 660 CRLYSIED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT-SADSRIRILDGLDI--VHKFRGF--RNTSSQ 732 (969)
Q Consensus 660 I~IwDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg-s~Dg~I~IwD~~~~--~~~~~~~--~~~~~V 732 (969)
|-+|.... ++......+......-........|..+++| ++|.++ -....|.+|.+... ...+... .+...-
T Consensus 215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P 293 (346)
T COG2706 215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP 293 (346)
T ss_pred EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC
Confidence 99999887 3433332222222223345677889999999 555555 33457888875432 2222222 222335
Q ss_pred EEEEEeCCCCEEEEEeCCC-cEEEEEcCC
Q 002086 733 ISAAFNADGKYIISASEDS-QVYVWKREE 760 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg-~I~IWdl~t 760 (969)
....|+++|++|+++..|+ .|.+|.++.
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 6789999999999998864 599998875
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.76 E-value=3e-08 Score=123.39 Aligned_cols=194 Identities=15% Similarity=0.271 Sum_probs=155.4
Q ss_pred eccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
++.|-..|.++.-+| ..+.+||+.||.|++|....++.+..+ .....|+.+.|+. .|+.+..+..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence 445667788888888 789999999999999999999988777 3338899999998 899999999999999999997
Q ss_pred ceEEEEecCCCCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 627 RLVVDWTDLHEMVTAACYTPDGQNALIGS---HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 627 ~~~~~~~~~~~~V~sv~fspdg~~Lasgs---~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
.....+..|......+.|-. ..+++++ .++.+.+||.--....... ...|...++++++.|.. +.|+
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------~~~H~~gaT~l~~~P~~-qlli 2352 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------HTCHDGGATVLAYAPKH-QLLI 2352 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-------eeecCCCceEEEEcCcc-eEEE
Confidence 77778888888888888876 5566543 5789999997543322111 16799999999999987 8999
Q ss_pred EEeCCCcEEEEeCCcce--EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCC
Q 002086 704 VTSADSRIRILDGLDIV--HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST 766 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~--~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t 766 (969)
+|+.+|.|++||.+... +.+.. +. ...++++|+..|.|+||++.....+.+
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 99999999999976533 22221 34 567999999999999999998655444
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.69 E-value=5.5e-07 Score=94.71 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=115.1
Q ss_pred EeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECC-CCcEEEE--eecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 549 SFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDME-TKSCLKL--FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~-t~~~i~~--~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.++.|.-+++...|+. .+++.+|+.|+.+..||++ .++++.. ..|...|.+|.-+|..+.+|++|+.|-.|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 6788999999999986 6899999999999999999 3444433 369999999999997889999999999999999
Q ss_pred CCC-ceEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 624 ISD-RLVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 624 l~~-~~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
.++ ++++......+.|..+..+|.-. .++.++.-.-.+|.++...... .++.+ ...+.|.+-++.-.|.... .+
T Consensus 240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e--~~~~~-~s~~~hdSl~YG~DWd~~~-~~ 315 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE--FQIVL-PSDKIHDSLCYGGDWDSKD-SF 315 (339)
T ss_pred hhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc--hheee-eccccccceeecccccccc-ce
Confidence 984 66776666678899999999543 3344444555677777665433 11111 1124566666666664332 45
Q ss_pred EEEEe-CCCcEE-EE
Q 002086 702 VLVTS-ADSRIR-IL 714 (969)
Q Consensus 702 l~sgs-~Dg~I~-Iw 714 (969)
|++++ .|..|+ +|
T Consensus 316 lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 316 LATCSFYDKKIRQLW 330 (339)
T ss_pred eeeeeccccceeeee
Confidence 66653 344433 44
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=4.4e-06 Score=97.85 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=124.5
Q ss_pred eeEeccCCCCEEEEEecC-CcE--E-EEEeCC--CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEEC-----
Q 002086 547 FCSFIGHLDDVLDLSWSR-SHL--L-LSSSMD--KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSL----- 615 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~-~~~--L-~Sgs~D--gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~----- 615 (969)
...+......+..-.|+| ++. + ++...+ ..|.+.++.+++...+....+.....+|+| +++.|+..+.
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~ 255 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNP 255 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCc
Confidence 334444555667779999 433 2 344444 358888999888766665666667789999 8988876553
Q ss_pred CCeEEEEeCCC---ceEEEEecCC-CCEEEEEEccCCCEEEEEe-CCCcEEEE--EcCCC-ceeeeeeeeecccccCCCC
Q 002086 616 DAKVRIWSISD---RLVVDWTDLH-EMVTAACYTPDGQNALIGS-HKGSCRLY--SIEDS-KLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 616 Dg~I~IWDl~~---~~~~~~~~~~-~~V~sv~fspdg~~Lasgs-~dg~I~Iw--Dl~~~-~~~~~~~~~~~~~~~~h~~ 687 (969)
+..+.+|++.. +....+.... ......+|+|||+.|+..+ .+|...|| ++... .... .+ .....
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~--~l------t~~~~ 327 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR--LL------TKKYR 327 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE--Ee------ccCCC
Confidence 22345577764 3444444332 3446789999999888765 46655555 44321 1111 00 12234
Q ss_pred CeEEEEEcCCCCceEEEE-eCC--CcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCC
Q 002086 688 KITGFQFSPSNPSEVLVT-SAD--SRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE---DSQVYVWKREE 760 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sg-s~D--g~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~---Dg~I~IWdl~t 760 (969)
.+....|+|++ ..|+.. ..+ ..|++||......... ......+....|+|||++|+.... ...|++|++.+
T Consensus 328 ~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 328 NSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 56788999999 455544 333 3689999754432221 112234567899999998875443 34688889876
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.8e-05 Score=88.45 Aligned_cols=289 Identities=14% Similarity=0.137 Sum_probs=164.1
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...+...+++++|+++|-+. +..|+|++..++..+.+.... ....+.+.+.+..... +.......... .
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T------~e~~~i~~~~~--~ 102 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLT------WEPWAIYGPKN--A 102 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeeccccccccc------ccccccccCCC--C
Confidence 34477889999999888765 667999999888533322211 1222222222111110 00000000000 0
Q ss_pred CcccccceeeecCC-CceeEecc-CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCC
Q 002086 531 DYVHVPETVFSLSE-KPFCSFIG-HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 531 ~~~~~~~~v~~~~~-k~~~~l~g-H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~ 608 (969)
. .....+|.... .....+.. .+.. ++..|+.+..|++=-..+.|.+|++...+.+...-|...|+.+.++|....
T Consensus 103 ~--~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 103 S--NPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred C--CCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCC
Confidence 0 11112222222 11111111 2222 688888876666666678899999998666665568889999999994233
Q ss_pred -EEEE-----EECCCeEEEEeCCCceEEEEecC----CCCEEEEEEccCCCEEEE-Ee--C---------CCcEEEEEcC
Q 002086 609 -YFIS-----GSLDAKVRIWSISDRLVVDWTDL----HEMVTAACYTPDGQNALI-GS--H---------KGSCRLYSIE 666 (969)
Q Consensus 609 -~L~s-----gs~Dg~I~IWDl~~~~~~~~~~~----~~~V~sv~fspdg~~Las-gs--~---------dg~I~IwDl~ 666 (969)
.+++ .+.-..|+||...-......... ...-..+.|++-|.-|++ ++ - ..+++++++.
T Consensus 180 ~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 180 PFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred ceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 3333 34456799998863322111111 112234667776653332 22 1 2368888887
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE-EeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV-TSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s-gs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
....... -...++|.++.|+|++..+.++ |-+-..+.|||.+- ...+.. ..++-+++-|+|.|++|+
T Consensus 260 g~s~~V~---------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 260 GESVSVP---------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred CceEEEe---------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEE
Confidence 4332211 2347899999999998444333 45667899999653 222322 345567899999999999
Q ss_pred EEeCC---CcEEEEEcCCCCccC
Q 002086 746 SASED---SQVYVWKREEHRNAS 765 (969)
Q Consensus 746 Sgs~D---g~I~IWdl~t~~~~~ 765 (969)
.+|-+ |.|-|||+.+.+++.
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i~ 350 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLIA 350 (566)
T ss_pred EeecCCCCCceEEEeccchhhcc
Confidence 88764 789999999855443
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=3.4e-05 Score=84.05 Aligned_cols=203 Identities=17% Similarity=0.275 Sum_probs=142.0
Q ss_pred cCCCCEEEEEecC-CcEEEEEeC---CCcEEEEECCC--CcEEEEe---ecCCCeEEEEEecCCCCEEEEEEC-CCeEEE
Q 002086 552 GHLDDVLDLSWSR-SHLLLSSSM---DKTVRLWDMET--KSCLKLF---AHNDYVTCIQFNPMDDDYFISGSL-DAKVRI 621 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sgs~---DgtV~IWDl~t--~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~I 621 (969)
.+.+..+-|+|++ +++|.++-. +|.|.-|.+.. |.....- .-..+-.-+++++ ++++++++.. -|.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEE
Confidence 3556677899998 567777754 57788777764 4443322 2233448899998 8888888765 478999
Q ss_pred EeCCC-ce---EEEEecCCCC----------EEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 622 WSISD-RL---VVDWTDLHEM----------VTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 622 WDl~~-~~---~~~~~~~~~~----------V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
+-++. |. ++....|.+. +....+.|++++|++.+ ....|.+|++..+++.......+ ...
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-----~~G 190 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-----KPG 190 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-----CCC
Confidence 99865 43 3344445444 88899999999998866 45689999999888765544332 345
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE----------eecCCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR----------GFRNTSSQISAAFNADGKYIISASE-DSQVYV 755 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~----------~~~~~~~V~sl~fspdg~~LaSgs~-Dg~I~I 755 (969)
..-..|.|+|+++-..++.-.+++|.+|........+. .+......-.+.+++||++|.++.. ...|-+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 56778999999966666677899999998554322221 2334455668899999999998865 346888
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|.+..
T Consensus 271 f~V~~ 275 (346)
T COG2706 271 FSVDP 275 (346)
T ss_pred EEEcC
Confidence 88875
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.66 E-value=1.5e-05 Score=100.83 Aligned_cols=290 Identities=13% Similarity=0.183 Sum_probs=169.9
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-...|.|++||||+.+||....+++|.+-. .+.+.+......... +... ....+.+......+.. ..++...
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~-----~~~~-~~VsVGWGkKeTQF~G-s~gK~aa 190 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDD-----FGES-KHVSVGWGKKETQFHG-SAGKAAA 190 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccc-----cCCC-ceeeeccCcccCccCc-chhhhhh
Confidence 357899999999999999999999888764 344444432211000 0000 0000001100000000 0000000
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC---C---CcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM---D---KTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~---D---gtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
.. ...+. ........+. +.+.-..|+|-. +.+|++.+. . ..|+||+-+ |....+- .-.+--.+++
T Consensus 191 ~~-~~~p~----~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~ 263 (928)
T PF04762_consen 191 RQ-LRDPT----VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALS 263 (928)
T ss_pred hh-ccCCC----CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCcc
Confidence 00 00000 0000011233 445667788987 788888874 2 579999987 5444333 2233345789
Q ss_pred EecCCCCEEEEEEC---CCeEEEEeCCCceEEEE----ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 602 FNPMDDDYFISGSL---DAKVRIWSISDRLVVDW----TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 602 fsp~~~~~L~sgs~---Dg~I~IWDl~~~~~~~~----~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
|-| .|++|++... ...|.+|.-+.-+--.+ ......|..+.|++++..||+...|. |.+|-..+.......
T Consensus 264 WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 264 WRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ 341 (928)
T ss_pred CCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence 999 9999988764 34566776544322221 12346799999999999999977555 999998877643333
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC----C--c--------ceEEE-----------------
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG----L--D--------IVHKF----------------- 723 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~----~--~--------~~~~~----------------- 723 (969)
.+.+ .....+..+.|+|..+..|.+.+.++.+..++. . . .....
T Consensus 342 ei~~-----~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 342 EIRF-----SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP 416 (928)
T ss_pred EEEc-----cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCc
Confidence 2221 223334559999998888888888777766540 0 0 01000
Q ss_pred ----EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 724 ----RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 724 ----~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
....-...|..++|++++..+++-..||.|.+|.....
T Consensus 417 PMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 417 PMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred hHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 11223567899999999988999999999999996553
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=1.5e-06 Score=92.96 Aligned_cols=165 Identities=15% Similarity=0.249 Sum_probs=113.4
Q ss_pred ccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEe---e-----cCCCeEEEEEecCCCCEEEEEECCCeEEE
Q 002086 551 IGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMET-KSCLKLF---A-----HNDYVTCIQFNPMDDDYFISGSLDAKVRI 621 (969)
Q Consensus 551 ~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t-~~~i~~~---~-----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~I 621 (969)
..|+..|.++.++.+...+....|=.|.+|+++- .++.... . -+.-|++..|+|...+.|+-.+..|+|++
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 5799999999999865555566788999999873 3333322 2 34568999999977888999999999999
Q ss_pred EeCCCceEEE----E-------------ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-Cceeeeeeeeeccc--
Q 002086 622 WSISDRLVVD----W-------------TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQLNQVDFQTK-- 681 (969)
Q Consensus 622 WDl~~~~~~~----~-------------~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~~~~~~~~~~~~-- 681 (969)
-|++...+.. + ...-..|..+.|+++|+++++-.. -+|++||+.. .+.....++.-...
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence 9998543211 1 111245889999999999998653 5899999943 33333332211000
Q ss_pred c-----cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 682 K-----KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 682 ~-----~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
. ....-.-..++|+.++ ..+++|+.....++++..
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCC
Confidence 0 0111123457788776 799999999999999943
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.3e-07 Score=105.51 Aligned_cols=240 Identities=16% Similarity=0.168 Sum_probs=154.5
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..++++|+.+|..+-|-.|-++++++ ||.|.+||---|..+......
T Consensus 777 QfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da------------------------------- 823 (1034)
T KOG4190|consen 777 QFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA------------------------------- 823 (1034)
T ss_pred eeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC-------------------------------
Confidence 34577899999999999999888876 789999997655443311100
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEE-eCCCcEEEEECCCCcEEEEe------ecCCC
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSS-SMDKTVRLWDMETKSCLKLF------AHNDY 596 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sg-s~DgtV~IWDl~t~~~i~~~------~h~~~ 596 (969)
.-.+-.+.|.|+.-.....++.| +...+|+++|.+.++....+ +.+..
T Consensus 824 -------------------------pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 824 -------------------------PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred -------------------------cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 00122234445443233444444 78999999999988766544 34567
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-CCCEEEEEEccCCCEEEEEeCCCcEEE-EEcCCCceeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-HEMVTAACYTPDGQNALIGSHKGSCRL-YSIEDSKLHQLN 674 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-~~~V~sv~fspdg~~Lasgs~dg~I~I-wDl~~~~~~~~~ 674 (969)
+.+++..+ .++.++++-.+|.|.+.|.++|+++..... ......++ .|..+.++....|.++.+ |-.-++....+.
T Consensus 879 ~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 879 TRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred eeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 89999999 999999999999999999999997753332 22222232 345566776667888887 876665543221
Q ss_pred eeeecccccCCCCCeEEEEEcC-CCCceEEEEeCCCcEEEEeCC------cceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSP-SNPSEVLVTSADSRIRILDGL------DIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fsp-d~~~~l~sgs~Dg~I~IwD~~------~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
.. ...+.. |-. -| .-+++......+.+|-.. ..+.+++...-.+..++++--|-+.-++.|
T Consensus 957 kp--------ppepah---flqsvg-pSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaG 1024 (1034)
T KOG4190|consen 957 KP--------PPEPAH---FLQSVG-PSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAG 1024 (1034)
T ss_pred CC--------CCcchh---hhhccC-ceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhcc
Confidence 11 111110 111 13 356666666777888521 222333334445667788888877777888
Q ss_pred eCCCcEEE
Q 002086 748 SEDSQVYV 755 (969)
Q Consensus 748 s~Dg~I~I 755 (969)
.+.|.|.+
T Consensus 1025 ne~G~IaL 1032 (1034)
T KOG4190|consen 1025 NEHGAIAL 1032 (1034)
T ss_pred CCCCceee
Confidence 88888875
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.9e-06 Score=95.78 Aligned_cols=290 Identities=17% Similarity=0.245 Sum_probs=164.1
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeC-----------CCcEEEEecccceEEEeecC--CccCcccccccCCCCC
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGE-----------DRVIHVWEVQECEVMSMSEG--NLTPIHPSLCNSSDKA 507 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~-----------DgtVrIWDl~tg~~l~~~~~--~~~~v~~~~~~~~~~~ 507 (969)
+..++.+. |. .|.-+.|||..+||+|-+. ...++|||+.+|.+.+.+.. ......++.-..
T Consensus 241 f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS---- 314 (698)
T KOG2314|consen 241 FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS---- 314 (698)
T ss_pred HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec----
Confidence 33334342 54 4788999999999999763 25799999999998876543 111111111111
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCccccc-ceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-----CCcEEEE
Q 002086 508 SSLDGSSPNPPPEKKKKGKHSSPDYVHVP-ETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-----DKTVRLW 580 (969)
Q Consensus 508 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-----DgtV~IW 580 (969)
.+.+.............. .....+..+.+ .-..|....|+| +++|+--.. -..+.|.
T Consensus 315 -----------~DdKy~Arm~~~sisIyEtpsf~lld~Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ 378 (698)
T KOG2314|consen 315 -----------HDDKYFARMTGNSISIYETPSFMLLDKKSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLM 378 (698)
T ss_pred -----------cCCceeEEeccceEEEEecCceeeeccccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEE
Confidence 011100000000000000 00001111111 235688889999 555554332 1346666
Q ss_pred ECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEE----------ECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCC
Q 002086 581 DMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISG----------SLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 581 Dl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sg----------s~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg 648 (969)
.+.+++.+++.. |+-.=..+.|.. ++.+|..- +.-..+-|+.++... .+........|...+|-|.|
T Consensus 379 evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~g 457 (698)
T KOG2314|consen 379 EVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHG 457 (698)
T ss_pred ecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCC
Confidence 666666665442 111112344544 55555432 222346666666543 45666777889999999999
Q ss_pred CEEEEEeC---CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE---eCCCcEEEEeCCcceEE
Q 002086 649 QNALIGSH---KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT---SADSRIRILDGLDIVHK 722 (969)
Q Consensus 649 ~~Lasgs~---dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg---s~Dg~I~IwD~~~~~~~ 722 (969)
+.+++-+. ..++.+|.+.+...... +. ..-.....+.+.|+|.| ++++++ +..|.+.++|+.-....
T Consensus 458 dkF~vi~g~~~k~tvsfY~~e~~~~~~~----lV--k~~dk~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k 530 (698)
T KOG2314|consen 458 DKFAVISGNTVKNTVSFYAVETNIKKPS----LV--KELDKKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLK 530 (698)
T ss_pred CeEEEEEccccccceeEEEeecCCCchh----hh--hhhcccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhh
Confidence 98876443 45888998874221111 11 12233567789999999 566554 56789999997642222
Q ss_pred EEeecCCCCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCC
Q 002086 723 FRGFRNTSSQISAAFNADGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fspdg~~LaSgs~------Dg~I~IWdl~t 760 (969)
...+..+...+.+.|.|.|+|++|++. |.--+||++..
T Consensus 531 ~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 531 DTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred hccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 233333445678899999999999986 45566777764
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=6.1e-08 Score=108.07 Aligned_cols=245 Identities=13% Similarity=0.206 Sum_probs=161.6
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccc-eEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC-EVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
++.+.||+..|..++--.+.+-+++++.|++|++|.+... ..+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~----------------------------------- 772 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG----------------------------------- 772 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc-----------------------------------
Confidence 4568899999999988888889999999999999998631 0000
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVT 598 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~-~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~ 598 (969)
......++..|..+|.++.|-.+ .++ ++.||-|.+||.--+..+..+ ...+.+.
T Consensus 773 --------------------tsaCQfTY~aHkk~i~~igfL~~lr~i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~ 830 (1034)
T KOG4190|consen 773 --------------------TSACQFTYQAHKKPIHDIGFLADLRSI--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGG 830 (1034)
T ss_pred --------------------cceeeeEhhhccCcccceeeeecccee--eeccCcceeecccccchhHhhhcCcccCCCc
Confidence 01122367789999999999863 344 466899999999887776533 2223333
Q ss_pred EEEEecC-CCCEEEE-EECCCeEEEEeCCCceEEEE------ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 599 CIQFNPM-DDDYFIS-GSLDAKVRIWSISDRLVVDW------TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 599 sv~fsp~-~~~~L~s-gs~Dg~I~IWDl~~~~~~~~------~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
.+...+. +...+++ ++...+|+++|.+...-... ...+.-+.+++..+.|++++++-.+|.|.+.|.++++.
T Consensus 831 ~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 831 NIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred eeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 3333331 2334444 47889999999998754321 22335689999999999999999999999999999986
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE-EeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI-LDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I-wD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
.... .........++ .|.+ +.++....|.++.+ |........+.......+.. -.-.-|.-|+++..
T Consensus 911 INsw--------rpmecdllqla-apsd-q~L~~saldHslaVnWhaldgimh~q~kpppepah--flqsvgpSLV~a~~ 978 (1034)
T KOG4190|consen 911 INSW--------RPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH--FLQSVGPSLVTAQN 978 (1034)
T ss_pred eccC--------Ccccchhhhhc-Cchh-HHHHhhcccceeEeeehhcCCeeeeccCCCCcchh--hhhccCceeEEecc
Confidence 5432 11112222222 2333 67777888888888 87666555554332222211 01123556777776
Q ss_pred CCcEEEEE
Q 002086 750 DSQVYVWK 757 (969)
Q Consensus 750 Dg~I~IWd 757 (969)
...+.+|.
T Consensus 979 Gn~lgVYa 986 (1034)
T KOG4190|consen 979 GNILGVYA 986 (1034)
T ss_pred CcEEEEEe
Confidence 66677775
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=3.1e-06 Score=96.79 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=146.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEee----cCCCeEEEEEe------c-------------CCCCEEEEEECCCeEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFA----HNDYVTCIQFN------P-------------MDDDYFISGSLDAKVRI 621 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~----h~~~V~sv~fs------p-------------~~~~~L~sgs~Dg~I~I 621 (969)
..+++....||.++|||...++....|. -.+..++..|. | .+...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 6799999999999999999998887772 33444555542 2 13456788889999999
Q ss_pred EeCCCceEEEEe---cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 622 WSISDRLVVDWT---DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 622 WDl~~~~~~~~~---~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
|++..+++...+ .|.+.|.++.++.+-..|.+++.|+.+..|+.......... ......+..++++||+
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~--------~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW--------KEQKPLVSSLCISPDG 156 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee--------ccCCCccceEEEcCCC
Confidence 999999877654 36788999999999999999999999999999888765443 5567788999999997
Q ss_pred CceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC-----CCEEEEE-eCCCcEEEEEcCC
Q 002086 699 PSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD-----GKYIISA-SEDSQVYVWKREE 760 (969)
Q Consensus 699 ~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd-----g~~LaSg-s~Dg~I~IWdl~t 760 (969)
..+++++ ++|.+||..+........+|.+.|.++.|..+ |.|++++ ..+..|.+|-++.
T Consensus 157 -~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 -KILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -CEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5666664 78999998877666666677888999999876 6676654 4466788998875
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=8.9e-06 Score=95.25 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=103.5
Q ss_pred EEEEEecC-CcEEEEEeC-----CCcEEEEECCCC---cEEEEeec-CCCeEEEEEecCCCCEEEEEE-CCCeEEEE--e
Q 002086 557 VLDLSWSR-SHLLLSSSM-----DKTVRLWDMETK---SCLKLFAH-NDYVTCIQFNPMDDDYFISGS-LDAKVRIW--S 623 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~-----DgtV~IWDl~t~---~~i~~~~h-~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IW--D 623 (969)
.....|+| ++.|+..+. +..+.+|++..+ +....... .......+|+| ++..|+..+ .+|...|| +
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEE
Confidence 34578999 666665442 334455777653 33444432 23456789999 888777665 46654555 4
Q ss_pred CCC--ceEEEEecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 624 ISD--RLVVDWTDLHEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 624 l~~--~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
+.. +....+......+....|+|||+.|+....+ ..|.+||+.+++..... .....+....|+|++
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---------~~~~~~~~p~wSpDG 382 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT---------TSPENKESPSWAIDS 382 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc---------CCCCCccceEECCCC
Confidence 432 3344444444567789999999999876543 36999999888754321 112345678999998
Q ss_pred CceEEEEeC--CCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC
Q 002086 699 PSEVLVTSA--DSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 699 ~~~l~sgs~--Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd 740 (969)
..+++++.. ...|+++|........ .......+...+|+|-
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTRK-IVIGSGEKRFPSWGAF 425 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCcccCceecCC
Confidence 444444443 3468888865432211 1123334556677764
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.56 E-value=2.2e-06 Score=90.48 Aligned_cols=251 Identities=20% Similarity=0.344 Sum_probs=163.0
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
..+-|+++.|...|.||+||...|.|.++.-....--.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce------------------------------------------ 62 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE------------------------------------------ 62 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccc------------------------------------------
Confidence 35679999999999999999999999999754311000
Q ss_pred CCcccccceeeecCCCceeEecc------------CCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--------
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIG------------HLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS-------- 586 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~g------------H~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~-------- 586 (969)
.+.+..+++ -...|..+.|.. ...++..+.|++|++|.+....
T Consensus 63 --------------ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nn 128 (460)
T COG5170 63 --------------YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENN 128 (460)
T ss_pred --------------hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccc
Confidence 000001111 234577888875 3678888999999999874320
Q ss_pred -----------------------------EE-----EEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc---
Q 002086 587 -----------------------------CL-----KLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--- 627 (969)
Q Consensus 587 -----------------------------~i-----~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--- 627 (969)
.+ +++ .|...|.++.|+. +...++++ .|-.|.+|++.--
T Consensus 129 ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~s 206 (460)
T COG5170 129 LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGS 206 (460)
T ss_pred cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCc
Confidence 00 011 4777789999987 66666654 5788999998642
Q ss_pred -eEEEEecCC-----CCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeee------eee--ecccccCCCCCeEEE
Q 002086 628 -LVVDWTDLH-----EMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLN------QVD--FQTKKKSSTRKITGF 692 (969)
Q Consensus 628 -~~~~~~~~~-----~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~------~~~--~~~~~~~h~~~It~l 692 (969)
.++....+. .-|++..|+|.. ..+.-.+..|.|++-|++...+.... .+. -......-...|..+
T Consensus 207 FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~ 286 (460)
T COG5170 207 FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDF 286 (460)
T ss_pred eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcce
Confidence 344444444 458899999964 56667888999999999854332110 000 000112334678899
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeec----------CCCCe---EEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFR----------NTSSQ---ISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~----------~~~~V---~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
.|++.| .+++ +-.--+|+|||... ++.+...|. ....| ..+.|+-|.+.+++|+.....-||
T Consensus 287 kFs~ng-ryIl-sRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 287 KFSDNG-RYIL-SRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEcCCC-cEEE-EeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 999987 4444 44456899999653 333322221 11122 357899999999999999999999
Q ss_pred EcCC
Q 002086 757 KREE 760 (969)
Q Consensus 757 dl~t 760 (969)
-+.+
T Consensus 365 p~~s 368 (460)
T COG5170 365 PTDS 368 (460)
T ss_pred cccc
Confidence 8665
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.48 E-value=2.5e-05 Score=81.47 Aligned_cols=189 Identities=14% Similarity=0.129 Sum_probs=129.6
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eEEE--EecCCCCE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LVVD--WTDLHEMV 639 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~--~~~~~~~V 639 (969)
..+..++.|.++++.++..+...... |. -.+.++++++ ++.++++.+....|..|.+... .++. .....+.-
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG 206 (344)
T ss_pred cceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence 34667788888888888755433322 32 2388999999 9999999999999999998653 2222 22333556
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE-EEeCCCcEEEEeCCc
Q 002086 640 TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL-VTSADSRIRILDGLD 718 (969)
Q Consensus 640 ~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~-sgs~Dg~I~IwD~~~ 718 (969)
.+..|+.....+|++..||++.|||++........ .......|.+.+..+.|++.|..-|+ ..-.-+.+.+.|+++
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~---~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE---ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eeeeeccCcceEEEEecCCcEEEEEecccccchhh---hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 78899999999999999999999999976543221 22233568899999999987654444 444456788999776
Q ss_pred ceEEEEe-------ecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 719 IVHKFRG-------FRN-TSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 719 ~~~~~~~-------~~~-~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
....... ..+ ...|....|+.++.-+.+.+++ .+.=|++.+
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 4322111 111 2336777788777766666654 456677665
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.48 E-value=5.2e-05 Score=80.42 Aligned_cols=189 Identities=17% Similarity=0.248 Sum_probs=118.4
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-------ecCCCeEEEEEecCC-----CCEEEEEECCCeEEEEe
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-------AHNDYVTCIQFNPMD-----DDYFISGSLDAKVRIWS 623 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-------~h~~~V~sv~fsp~~-----~~~L~sgs~Dg~I~IWD 623 (969)
=.-++|+| +.+||.+...|+|+++|+....+...- .....|..|.|.+.. ...|++-..+|.++-|-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 35799999 788999999999999999865443221 234567888886522 23677778888888777
Q ss_pred CCCc------e--EEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 624 ISDR------L--VVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 624 l~~~------~--~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
+..+ + .+.+.. ....|.++.|+|..++|++|+.... .++. .......+++-..
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~------------s~a~~~GLtaWRi 187 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM------------SKASSCGLTAWRI 187 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc------------ccccccCceEEEE
Confidence 6322 1 112222 3468999999999998888764322 0000 0222334555444
Q ss_pred cCCCCceEEEEeCCCcE-------EEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 695 SPSNPSEVLVTSADSRI-------RILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I-------~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
-.+.+.+..+...+..+ -+|.+.....-.........|..|+.||||..||+...+|.|.+|++.+-+.
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 44444444444332222 2232221111111123456789999999999999999999999999988543
No 274
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.45 E-value=0.00039 Score=75.12 Aligned_cols=219 Identities=14% Similarity=0.113 Sum_probs=144.4
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccc
Q 002086 456 TIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVH 534 (969)
Q Consensus 456 ~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (969)
++.|.+ ++.++++--..+.|..|+..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~---------------------------------------------- 37 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI---------------------------------------------- 37 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------------------------------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE----------------------------------------------
Confidence 577887 777777777788899999887654321
Q ss_pred ccceeeecCCCceeEeccCCCCEEEEEec-CCcEEEEEeCCCcEEEEECCCCcEEEEee------cCCCeEEEEEecCCC
Q 002086 535 VPETVFSLSEKPFCSFIGHLDDVLDLSWS-RSHLLLSSSMDKTVRLWDMETKSCLKLFA------HNDYVTCIQFNPMDD 607 (969)
Q Consensus 535 ~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~------h~~~V~sv~fsp~~~ 607 (969)
. ......+.+. ++..|+.+...+. .++|..+++...... .....+.+++.+ ++
T Consensus 38 ----------------~--~~~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G 97 (246)
T PF08450_consen 38 ----------------D--LPGPNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DG 97 (246)
T ss_dssp ----------------E--SSSEEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS
T ss_pred ----------------e--cCCCceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CC
Confidence 0 1115666776 5677777776554 555999987665553 235688999999 88
Q ss_pred CEEEEEECC--------CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCce--eeeeee
Q 002086 608 DYFISGSLD--------AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNAL-IGSHKGSCRLYSIEDSKL--HQLNQV 676 (969)
Q Consensus 608 ~~L~sgs~D--------g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~La-sgs~dg~I~IwDl~~~~~--~~~~~~ 676 (969)
++.++.... |.|..++.. +++......-...+.|+|+|+++.|+ +-+..+.|..|++..... .....+
T Consensus 98 ~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 98 NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp -EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence 877776644 568888888 66655555556789999999999776 556788999999864332 211111
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEe-CCCCEEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFN-ADGKYIISA 747 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fs-pdg~~LaSg 747 (969)
.......+..-.+++..+| .++++....+.|.+++.... ...+... ...+++++|. ++.+.|+..
T Consensus 177 ---~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 177 ---IDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPDGKLLREIELP--VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ---EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE-S--SSSEEEEEEESTTSSEEEEE
T ss_pred ---EEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCCccEEEEEcCC--CCCEEEEEEECCCCCEEEEE
Confidence 1112222457889999988 67777778899999996633 2323322 3478999994 665555543
No 275
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=5.1e-07 Score=67.79 Aligned_cols=38 Identities=37% Similarity=0.633 Sum_probs=36.4
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWD 479 (969)
+++++|++|.+.|++|+|+|++.+|+||+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.44 E-value=3.5e-06 Score=87.37 Aligned_cols=182 Identities=15% Similarity=0.236 Sum_probs=113.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEE-e--ecCCCeEEEEEecCCCCEEEEEEC-----CCeEEEEeCCCceEE-EEecC
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKL-F--AHNDYVTCIQFNPMDDDYFISGSL-----DAKVRIWSISDRLVV-DWTDL 635 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~-~--~h~~~V~sv~fsp~~~~~L~sgs~-----Dg~I~IWDl~~~~~~-~~~~~ 635 (969)
++.++++..||.+.+++.+.-..+.. . .|.+... .++.. .++.+.++.. -+..+.|+++-.+.+ .....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as-~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~ 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSAS-RKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccc-cceee-cccEEecCCcceEeeccceeeecccccccccccccc
Confidence 78899999999999999876211110 0 1222111 11221 2344443321 234566666543322 12222
Q ss_pred CCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 636 HEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 636 ~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
...|++++-+|..+ .+++|+.||.+-+||.+.... .....+.|..+|..+-|+|.++..|++++.||.+..|
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccc-------hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 24499999999654 566789999999999998743 2223478999999999999999999999999999999
Q ss_pred eCCcceEEEE----------------------eecC--CCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 715 DGLDIVHKFR----------------------GFRN--TSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 715 D~~~~~~~~~----------------------~~~~--~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
|......... .... ...|. .|.--|..|++|+.-+-|++++
T Consensus 252 das~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 252 DASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCceEEecCccccccccccCCcccceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence 9542111110 0000 01111 3444577888888888888865
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.43 E-value=0.00021 Score=79.77 Aligned_cols=175 Identities=17% Similarity=0.198 Sum_probs=133.2
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC-eEEEEeCCCceEEEEecCCCCE
Q 002086 561 SWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA-KVRIWSISDRLVVDWTDLHEMV 639 (969)
Q Consensus 561 ~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg-~I~IWDl~~~~~~~~~~~~~~V 639 (969)
+..++++++..|. |.+.|.+...+-.++ ++|.+.|.-..+.- +++-++.|..|| .|-|||..++++......-+.|
T Consensus 328 a~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I 404 (668)
T COG4946 328 AVVNGDYIALVSR-GKAFIMRPWDGYSIQ-VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNI 404 (668)
T ss_pred ccCCCcEEEEEec-CcEEEECCCCCeeEE-cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccce
Confidence 3344778777775 566677665554443 46777788888887 777899999999 8999999999999988888999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC----cEEEEe
Q 002086 640 TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS----RIRILD 715 (969)
Q Consensus 640 ~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg----~I~IwD 715 (969)
.++..+++|++++++-....|.++|+.++...... +...+-|+.+.|+|++ .+++-+--+| .|+++|
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~id--------kS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID--------KSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec--------ccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEe
Confidence 99999999999999999999999999999865432 4556789999999987 7888775544 589999
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
...... +........=.+-+|.||+++|.--+
T Consensus 476 m~~~Ki-y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 476 MDGGKI-YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCCCeE-EEecCCcccccCcccCCCCcEEEEEe
Confidence 665322 22222223334668999999876544
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.43 E-value=0.00017 Score=80.40 Aligned_cols=245 Identities=11% Similarity=0.172 Sum_probs=162.6
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCC-cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDR-VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~Dg-tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++...
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---------------------------------------- 396 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---------------------------------------- 396 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE----------------------------------------
Confidence 6778888888888888888888888 88889888766433
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
+.+.-+.|.++..++ +++++.+-....|.+.|+.++.....- ...+-|+.++|+|
T Consensus 397 ----------------------~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~- 453 (668)
T COG4946 397 ----------------------IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP- 453 (668)
T ss_pred ----------------------eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-
Confidence 334557789999999 688999999999999999999876554 5667899999999
Q ss_pred CCCEEEEEECCC----eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-------CCcEEEEEcCCCceeeee
Q 002086 606 DDDYFISGSLDA----KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-------KGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 606 ~~~~L~sgs~Dg----~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-------dg~I~IwDl~~~~~~~~~ 674 (969)
+..+|+-+--+| .|+++|+.++++.........=.+-+|.|++++|..-+. |..+.-+.... .....
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~--vskPy 531 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQR--VSKPY 531 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEee--eccce
Confidence 888888776554 589999999999888777766677889999998765443 33222222211 00000
Q ss_pred eeeec-------------cccc-------CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC---------------cc
Q 002086 675 QVDFQ-------------TKKK-------SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL---------------DI 719 (969)
Q Consensus 675 ~~~~~-------------~~~~-------~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~---------------~~ 719 (969)
.+.+. .... +-...+.-+-..+ +....+++-.++.|.++... ..
T Consensus 532 lv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee-~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~ 610 (668)
T COG4946 532 LVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEE-GDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGR 610 (668)
T ss_pred EEEecCCCCChhhcCchhcCccccceehhhhcccccccccCc-cceeEeeecCCCeEEEEEeeccchhhhhhcCCCccce
Confidence 00000 0000 0001111111112 22345556666667666510 01
Q ss_pred eEEEEee-----cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 720 VHKFRGF-----RNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 720 ~~~~~~~-----~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..++... .-...+.++..|+|++.|+. -.||.+++++++.
T Consensus 611 l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 611 LEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1111111 12345788999999999988 7899999999987
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=0.00012 Score=85.54 Aligned_cols=190 Identities=9% Similarity=0.121 Sum_probs=123.4
Q ss_pred CEEEEEecC-CcE-EEEEeC---CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEE-EECC--CeEEEEeCCCc
Q 002086 556 DVLDLSWSR-SHL-LLSSSM---DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFIS-GSLD--AKVRIWSISDR 627 (969)
Q Consensus 556 ~I~~l~fs~-~~~-L~Sgs~---DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~s-gs~D--g~I~IWDl~~~ 627 (969)
.+..-.|+| ++. ++..+. +..|.++|+.+++........+.+....|+| ++..++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 778899999 553 554443 3569999999998877766667777889999 8876654 3333 46888899888
Q ss_pred eEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 628 LVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
....+...........|+|||+.|+..+. .+ .|+++|+.+++..... . .+. ....|+|++...+++
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt---~----~g~----~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV---F----HGK----NNSSVSTYKNYIVYS 336 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc---c----CCC----cCceECCCCCEEEEE
Confidence 77666555544456789999998887664 23 6888888877653221 0 111 124899999544444
Q ss_pred EeCC--------CcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCC
Q 002086 705 TSAD--------SRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDS---QVYVWKREE 760 (969)
Q Consensus 705 gs~D--------g~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg---~I~IWdl~t 760 (969)
.... ..|++.|..... ..+... .......|+|||+.|+-.+.++ .|.+.+++.
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRRLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 4332 367888854332 222211 1223578999999887665432 366667654
No 280
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.41 E-value=0.0002 Score=76.46 Aligned_cols=190 Identities=18% Similarity=0.129 Sum_probs=122.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCC----CCE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLH----EMV 639 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~----~~V 639 (969)
++.+++++.++.|..||..+|+.+..+.....+...... .+..++++..++.|+.+|..+++++... ... ...
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 678888899999999999999998877544443332222 4677777788899999999999877652 211 112
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC---CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 640 TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS---STRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 640 ~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~---h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
........+..++++..++.|..+|+.+++........... ... ....+..-....++ .++++..++.+..+|.
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~ 190 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDL 190 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEET
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccceEEECC--EEEEEcCCCeEEEEEC
Confidence 23333334888999999999999999999876544321100 000 01112222232233 7777777876444488
Q ss_pred CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 717 LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 717 ~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.+........ ...+.. ....++..|+.++.++.|.+||+.+++
T Consensus 191 ~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 191 ATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 7766555332 222222 245678888888899999999999943
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.40 E-value=4.6e-05 Score=87.83 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=117.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE----
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT---- 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~---- 640 (969)
+..++.++.++.|..+|..+|+.+........+.+.-.. .+..++.+..+|.|+.||.++++.+-.........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 577888899999999999999988776544444332222 35677778889999999999998765544332211
Q ss_pred --EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC--CCCceEEEEeCCCcEEEEeC
Q 002086 641 --AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP--SNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 641 --sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp--d~~~~l~sgs~Dg~I~IwD~ 716 (969)
...+ .+..++++..+|.+..+|..+++............ ......+..+.-+| .+ ..+++++.++.++.||.
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g-~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG-RTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCC-CCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEEC
Confidence 1111 13477888889999999999887643322110000 00000000000011 12 47888889999999997
Q ss_pred CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 717 LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 717 ~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.+......... . ..... ..++..|+.++.||.|+.+|..+++
T Consensus 259 ~tG~~~W~~~~-~-~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 259 RSGRVLWKRDA-S-SYQGP--AVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CCCcEEEeecc-C-CccCc--eEeCCEEEEECCCCeEEEEECCCCc
Confidence 66544443321 1 11112 2356788888899999999998843
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=2.1e-05 Score=91.99 Aligned_cols=260 Identities=15% Similarity=0.196 Sum_probs=172.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeCC------C------CEEEEEeCCCcEEEEecccceEEEeecCCccCccccccc
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLD------A------RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCN 502 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpD------g------~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~ 502 (969)
+.|-.++++++.+.-|...|+.+.|.|- + -+||++...|.|.|||...+..+.
T Consensus 39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~--------------- 103 (1062)
T KOG1912|consen 39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN--------------- 103 (1062)
T ss_pred EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---------------
Confidence 4466778889999999999999999872 1 267888888999999987644322
Q ss_pred CCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC----C-cEEEEEeCCCcE
Q 002086 503 SSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR----S-HLLLSSSMDKTV 577 (969)
Q Consensus 503 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~----~-~~L~Sgs~DgtV 577 (969)
.+..|.++|.+++|-+ . ..|++-..-.+|
T Consensus 104 ----------------------------------------------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 104 ----------------------------------------------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTL 137 (1062)
T ss_pred ----------------------------------------------hhcCCCcchhheeeeeccCcchheeEEecCCcEE
Confidence 4556788889999976 2 577777888999
Q ss_pred EEEECCCCcEEEEeecC-CCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-------ceEEEEec-CCC-----------
Q 002086 578 RLWDMETKSCLKLFAHN-DYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-------RLVVDWTD-LHE----------- 637 (969)
Q Consensus 578 ~IWDl~t~~~i~~~~h~-~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-------~~~~~~~~-~~~----------- 637 (969)
.+|+..+|+....+... ....|+.+.|.+...|..-+..|.|.+-+.-. ++.+++.. |.+
T Consensus 138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ 217 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATG 217 (1062)
T ss_pred EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcc
Confidence 99999999988777433 45667999998888888888888888777532 22222211 111
Q ss_pred ------C--------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC-ceE
Q 002086 638 ------M--------VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP-SEV 702 (969)
Q Consensus 638 ------~--------V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~-~~l 702 (969)
+ ...++|+|.-+.++.......+.|+|++-........+ ..+.+.-+.+-|+.. ..|
T Consensus 218 ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi--------er~~akfv~vlP~~~rd~L 289 (1062)
T KOG1912|consen 218 NSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI--------ERGGAKFVDVLPDPRRDAL 289 (1062)
T ss_pred ccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe--------ccCCcceeEeccCCCcceE
Confidence 0 12356788777677777788899999987766554433 123334455666542 468
Q ss_pred EEEeCCCcEEEEeCCcceEEEE------------------eecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCCc
Q 002086 703 LVTSADSRIRILDGLDIVHKFR------------------GFRNTSSQISAAFNAD-GKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~~~~------------------~~~~~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
++...||.+.||-.+.....++ ......++ .....|. ...++.--.+|.+.+|.+.+++.
T Consensus 290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~-~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV-IGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc-eeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 8889999999997433222111 11111111 2222333 33444444578899999997554
Q ss_pred c
Q 002086 764 A 764 (969)
Q Consensus 764 ~ 764 (969)
.
T Consensus 369 ~ 369 (1062)
T KOG1912|consen 369 H 369 (1062)
T ss_pred C
Confidence 3
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.32 E-value=0.00015 Score=83.63 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=113.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE------EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCC
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT------CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM 638 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~------sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~ 638 (969)
++.++.++.++.|..||..+|+.+..+....... +..+ .+..++.+..+|.+..+|+.+++.+........
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence 4677778889999999999999887664433221 1122 235778888899999999999876543221100
Q ss_pred --------EEEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 639 --------VTAACYTP--DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 639 --------V~sv~fsp--dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
...+.-+| .+..+++++.+|.++.||..+++....... . ....... .+ ..+++++.+
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~------~----~~~~p~~--~~-~~vyv~~~~ 288 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA------S----SYQGPAV--DD-NRLYVTDAD 288 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc------C----CccCceE--eC-CEEEEECCC
Confidence 00010111 356788888999999999998876433210 1 1111222 23 578888899
Q ss_pred CcEEEEeCCcceEEEEeecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 709 SRIRILDGLDIVHKFRGFRN-TSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 709 g~I~IwD~~~~~~~~~~~~~-~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
|.|+.+|..+.......... .....+... .+.+|++++.+|.|++||..+++
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 99999997665444332111 111112222 46789999999999999998843
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.31 E-value=0.00014 Score=82.09 Aligned_cols=239 Identities=13% Similarity=0.134 Sum_probs=150.0
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+..-.-++..++|||.|++|++....+ |.+|.......+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~------------------------------------- 69 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF------------------------------------- 69 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeee-------------------------------------
Confidence 344566899999999999999987766 889987654332211
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---------------CcEEEEECCCCcEEEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---------------KTVRLWDMETKSCLKL 590 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---------------gtV~IWDl~t~~~i~~ 590 (969)
-...|..+.|+| +.+|.+-+.. ..+.+||+.++..+..
T Consensus 70 --------------------------~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s 123 (561)
T COG5354 70 --------------------------RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS 123 (561)
T ss_pred --------------------------ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee
Confidence 113455666666 5666665433 3599999999999988
Q ss_pred ee-cCCC--eE-EEEEecCCCCEEEEEECCCeEEEEeCCCceEE--EEecC-CCCEEEEEEccCCC--EEEE-----EeC
Q 002086 591 FA-HNDY--VT-CIQFNPMDDDYFISGSLDAKVRIWSISDRLVV--DWTDL-HEMVTAACYTPDGQ--NALI-----GSH 656 (969)
Q Consensus 591 ~~-h~~~--V~-sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~--~~~~~-~~~V~sv~fspdg~--~Las-----gs~ 656 (969)
+. ...+ .+ -+.|+- ++.+++=. ....++|+++ +..+. .+... ...|....|+|.++ .|+. +..
T Consensus 124 f~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~k 200 (561)
T COG5354 124 FNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNK 200 (561)
T ss_pred ccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCC
Confidence 83 2222 44 677876 66655443 3456999997 33222 12222 25688889999643 3443 455
Q ss_pred CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe----------CCCcEEEEeCCcceEEEEee
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS----------ADSRIRILDGLDIVHKFRGF 726 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs----------~Dg~I~IwD~~~~~~~~~~~ 726 (969)
.+.++||.+..+.......+- ...=..+.|.+.|..+++..- ....++|+++.+.......
T Consensus 201 pa~~~i~sIp~~s~l~tk~lf--------k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~- 271 (561)
T COG5354 201 PAMVRILSIPKNSVLVTKNLF--------KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK- 271 (561)
T ss_pred CcEEEEEEccCCCeeeeeeeE--------eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-
Confidence 778999999866654433221 111234667777743333221 2355788886643322222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEcCCC
Q 002086 727 RNTSSQISAAFNADGKYIISAS--EDSQVYVWKREEH 761 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs--~Dg~I~IWdl~t~ 761 (969)
...++|...+|.|+++.+++.+ .+-.+-++|++..
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 4467899999999888766554 5777888888753
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.31 E-value=0.00016 Score=93.48 Aligned_cols=201 Identities=14% Similarity=0.188 Sum_probs=131.7
Q ss_pred EEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeec---------------CCCeEEEEEecCCCCEEEEE-ECCCeE
Q 002086 558 LDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAH---------------NDYVTCIQFNPMDDDYFISG-SLDAKV 619 (969)
Q Consensus 558 ~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h---------------~~~V~sv~fsp~~~~~L~sg-s~Dg~I 619 (969)
..+++++ +.++++-+..+.|++||... ..+..++- -.....|++++ +++.|+++ ...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 3567765 55777778889999999864 44444421 12358899998 67765554 445789
Q ss_pred EEEeCCCceEEEEecC-----------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc-
Q 002086 620 RIWSISDRLVVDWTDL-----------------HEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT- 680 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~~-----------------~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~- 680 (969)
+++|+.++.+..+.+. -.....++|+| ++..+++...++.|++||..++.......-....
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 9999988776544221 12346899999 5556667778899999999877543211000000
Q ss_pred -----cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-Ee-----------ec---------CCCCeEE
Q 002086 681 -----KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-RG-----------FR---------NTSSQIS 734 (969)
Q Consensus 681 -----~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~~-----------~~---------~~~~V~s 734 (969)
...........++|+|++..++++-+.++.|++||........ .+ +. .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 0011223567799999985567777888999999965432111 10 00 0112357
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
++|+++|.++++-..++.|++||..+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCC
Confidence 89999999999999999999999986
No 286
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.29 E-value=0.0011 Score=74.85 Aligned_cols=180 Identities=12% Similarity=0.086 Sum_probs=106.2
Q ss_pred CCCcEEEEECCCCcEEEEeec--------CCCeEEEEEecCCCCEEEEEE-C-CCeEEEEeCCCceEEEEecCCCCEEEE
Q 002086 573 MDKTVRLWDMETKSCLKLFAH--------NDYVTCIQFNPMDDDYFISGS-L-DAKVRIWSISDRLVVDWTDLHEMVTAA 642 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h--------~~~V~sv~fsp~~~~~L~sgs-~-Dg~I~IWDl~~~~~~~~~~~~~~V~sv 642 (969)
.+..|.+||..+.+.+..+.. ......++++| ++++|++.. . +..|.+.|+.+++++......+...-.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence 588999999999999987743 23345889999 898888766 3 689999999999988877665544444
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc--cccCCCCCeEEEEEcC-CCCceEEEEeCCCcEEEEeCCcc
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT--KKKSSTRKITGFQFSP-SNPSEVLVTSADSRIRILDGLDI 719 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~--~~~~h~~~It~l~fsp-d~~~~l~sgs~Dg~I~IwD~~~~ 719 (969)
..+.+..+ +-+.||......+.+..........+.. ...-...+ .|.+ ++ .++.+... |+|++.|....
T Consensus 154 ~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 154 PTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred EecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCC-cEEEEecC-CeEEEEecCCC
Confidence 44333322 2234555544444332221111111100 00001122 3455 55 66666666 99999994321
Q ss_pred ----eEEEEee--------cCCCCeEEEEEeCCCCEEEEEeC----------CCcEEEEEcCCC
Q 002086 720 ----VHKFRGF--------RNTSSQISAAFNADGKYIISASE----------DSQVYVWKREEH 761 (969)
Q Consensus 720 ----~~~~~~~--------~~~~~V~sl~fspdg~~LaSgs~----------Dg~I~IWdl~t~ 761 (969)
...+... -......-+++++++++|+.... .+.|.++|..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 1111111 12233334899999998887531 246888888773
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.29 E-value=5.1e-05 Score=79.19 Aligned_cols=197 Identities=13% Similarity=0.024 Sum_probs=133.3
Q ss_pred EEEecC------CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 559 DLSWSR------SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 559 ~l~fs~------~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
.+.|.| ..+|+.|+.-|...+|...+.+....+ .|...|+-+.=.-.....+..++.|.++++.++..+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 455655 368999999999999999977654333 344433322211112345677888999999988765332
Q ss_pred EEecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 631 DWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 631 ~~~~~~-~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
...... -.+.+++++++++++++.+....|..|.+......... + ........-.+..|+..+ ..++++..||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~----~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg 225 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-I----YEAPTSDHGFYNSFSEND-LQFAVVFQDG 225 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-e----EecccCCCceeeeeccCc-ceEEEEecCC
Confidence 211111 23789999999999999999999999999865432222 1 112334445667788876 7999999999
Q ss_pred cEEEEeCCcceEEE-----EeecCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEcCCC
Q 002086 710 RIRILDGLDIVHKF-----RGFRNTSSQISAAFNADGK--YIISASEDSQVYVWKREEH 761 (969)
Q Consensus 710 ~I~IwD~~~~~~~~-----~~~~~~~~V~sl~fspdg~--~LaSgs~Dg~I~IWdl~t~ 761 (969)
++.|||++...... ....|.+.+..+.|++-|. +|+-.-.-+.+.+-|+++.
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 99999976532211 2234788899999998653 4555555678999999884
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.28 E-value=3.7e-06 Score=87.19 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=63.3
Q ss_pred CEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 556 DVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 556 ~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
.|.+++-+| .+.+++|+.||.|-+||++.......+ .|+.+|+.+.|+|.++..|++++.||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 488899888 688999999999999999988554433 89999999999999999999999999999999875
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.4e-06 Score=91.65 Aligned_cols=205 Identities=13% Similarity=0.152 Sum_probs=147.7
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEE---Ee-ecCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCCCc
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLK---LF-AHNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSISDR 627 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~---~~-~h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~~ 627 (969)
|.+.|+.+.....+++++++.||.++.|.-..-.-+. .+ .|...|.+++.+- ++.++.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeecc
Confidence 8888888888778999999999999999876522222 22 6888899999988 8889999777 999999999876
Q ss_pred eEEEEecCCCCEEEEEEcc-CC---CEEEE-EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 628 LVVDWTDLHEMVTAACYTP-DG---QNALI-GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fsp-dg---~~Las-gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
..+.........-.++|.. .| ..|++ .-.+|.|.|+|-....+. .......|..+|.++.+.+.+ ..+
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q------~~~fkklH~sPV~~i~y~qa~-Ds~ 159 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ------DGYFKKLHFSPVKKIRYNQAG-DSA 159 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc------cceecccccCceEEEEeeccc-cce
Confidence 5543333332222222322 22 13443 336789999998765432 122336789999999999988 678
Q ss_pred EEEeCCCcEEEEeCCcceE---------------EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccC
Q 002086 703 LVTSADSRIRILDGLDIVH---------------KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAS 765 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~---------------~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~ 765 (969)
++....|.|..|......+ .+..........++.|+|+|..+.+-+.|..|+++++.+++.++
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 8888889999998552110 11112234556789999999999999999999999999976543
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.24 E-value=3.9e-06 Score=97.23 Aligned_cols=237 Identities=19% Similarity=0.251 Sum_probs=157.3
Q ss_pred ccCcceEEEccCCCc-cccccc---ceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCcc
Q 002086 420 NVSNHWVKVRQSGKS-YKDLSA---LHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLT 494 (969)
Q Consensus 420 ~~~~~~v~v~~~~~~-l~dl~~---~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~ 494 (969)
.....|+..+...+. +|.|.. ...-..|.||..+|+.+-|.|... .|+|++.|-.|..||+..-..
T Consensus 79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------- 149 (1081)
T KOG0309|consen 79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------- 149 (1081)
T ss_pred CCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---------
Confidence 345566665554443 444432 233445889999999999999655 899999999999999874211
Q ss_pred CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC
Q 002086 495 PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM 573 (969)
Q Consensus 495 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~ 573 (969)
++..+..-...-..|+|+- +..+++.+.
T Consensus 150 ---------------------------------------------------p~ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 150 ---------------------------------------------------PFYSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred ---------------------------------------------------ceeeeecccccCceeeecccCcchhhhcc
Confidence 1112222233445678876 667777888
Q ss_pred CCcEEEEECCCCcE-EEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCC
Q 002086 574 DKTVRLWDMETKSC-LKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 574 DgtV~IWDl~t~~~-i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~ 649 (969)
.+.|++||.+.|.. +..+ +|...|+.++|+......+.+++.||+|+.||.... +.........+|..-+|.|-|+
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 88999999998763 3333 789999999998866778999999999999998653 3344555567788888888665
Q ss_pred EEEEEeC--CCcEEEEEcCCCceeee--eeeeecccccCCCCCeEEEEEcCCC---------CceEEEEeCCCcEEEEeC
Q 002086 650 NALIGSH--KGSCRLYSIEDSKLHQL--NQVDFQTKKKSSTRKITGFQFSPSN---------PSEVLVTSADSRIRILDG 716 (969)
Q Consensus 650 ~Lasgs~--dg~I~IwDl~~~~~~~~--~~~~~~~~~~~h~~~It~l~fspd~---------~~~l~sgs~Dg~I~IwD~ 716 (969)
-.++--. +..+.+++.++...... ..........+|...|..+.|-..+ ...|++-+.|..+++|-+
T Consensus 259 g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 259 GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred eeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 4443221 22455555444322100 0001223346788888777765432 246888999999999963
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=2e-06 Score=92.21 Aligned_cols=151 Identities=14% Similarity=0.194 Sum_probs=117.0
Q ss_pred EEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 611 ISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
++.+.+..|-+-|+.++....+. ....|.++.|...+++++.|+.+|.|..+|++....-.. .....--|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~----~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG----WCAQRLYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC----cceEEEEcCcchh
Confidence 56667788999999888665554 667799999999999999999999999999987632111 1111145788899
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCc-----ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLD-----IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAS 765 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~-----~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~ 765 (969)
+++.-....++|++.+.+|.|.+||.+- .+..+++|.+...-.-+-..+....+++++.|...+||.++.+..+.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 9887774458999999999999999653 36677888776665666677888899999999999999999865544
Q ss_pred C
Q 002086 766 T 766 (969)
Q Consensus 766 t 766 (969)
+
T Consensus 383 t 383 (425)
T KOG2695|consen 383 T 383 (425)
T ss_pred c
Confidence 3
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=3.9e-05 Score=88.77 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=158.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
...++.+-++|.||.+.|.-+.|+...+.|-|...+|.|.||-+-.|.-....-
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi-------------------------- 110 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI-------------------------- 110 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh--------------------------
Confidence 344556678899999999999999999999999999999999876543211000
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND 595 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~ 595 (969)
-.-..+-|.+++|+- |..++..-.||.|.+=.+........--...
T Consensus 111 ---------------------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~ 157 (1189)
T KOG2041|consen 111 ---------------------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ 157 (1189)
T ss_pred ---------------------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh
Confidence 001234577888876 7788888888888776665443321111112
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--------EEE----ecCCCCEEEEEEc--------cCCCEEEEEe
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--------VDW----TDLHEMVTAACYT--------PDGQNALIGS 655 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--------~~~----~~~~~~V~sv~fs--------pdg~~Lasgs 655 (969)
....+.|++ +...++.+-.+|.+.+||....-. +.. ......|..+.|. |+...|+++.
T Consensus 158 ~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 234678999 888888888899999999865311 111 1122335556654 4778899999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC---------cEEEEeCC-cceEEEEe
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS---------RIRILDGL-DIVHKFRG 725 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg---------~I~IwD~~-~~~~~~~~ 725 (969)
.+|.+.|..-.+...... ......+..+.|+++| ..|++++.+. .|.+|... .....++.
T Consensus 237 ~nGr~QiMR~eND~~Pvv---------~dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv 306 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVV---------VDTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV 306 (1189)
T ss_pred cCceehhhhhcCCCCCeE---------EecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEec
Confidence 999998876554432221 1223678899999998 7888876542 45555532 22222222
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 726 FRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
....|++++|-..|-.++.+- |+.|++=++
T Consensus 307 --pg~~It~lsWEg~gLriA~Av-dsfiyfanI 336 (1189)
T KOG2041|consen 307 --PGSCITGLSWEGTGLRIAIAV-DSFIYFANI 336 (1189)
T ss_pred --CCceeeeeEEcCCceEEEEEe-cceEEEEee
Confidence 344577777766665554443 444444333
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.20 E-value=1.8e-05 Score=86.95 Aligned_cols=155 Identities=11% Similarity=0.207 Sum_probs=107.3
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC---Cceee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED---SKLHQ 672 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~---~~~~~ 672 (969)
+..++ .+.+|+++..+....++++... ++..........+++.|..+...+.++...|.++-+|+-. +...
T Consensus 68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~- 145 (390)
T KOG3914|consen 68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE- 145 (390)
T ss_pred cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-
Confidence 34555 6777777777777666666543 3344444455566777777777777766666555555433 3322
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc--eEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI--VHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~--~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
...+|...++.++|+||+ ++++++..|..|++-..... +..+ ..+|...|..++.-++ ..|++||.|
T Consensus 146 --------~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~~-~~LlS~sGD 214 (390)
T KOG3914|consen 146 --------PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTDN-YLLLSGSGD 214 (390)
T ss_pred --------hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeeccC-ceeeecCCC
Confidence 226899999999999998 89999999999999763322 1111 2345667888887754 569999999
Q ss_pred CcEEEEEcCCCCccCCC
Q 002086 751 SQVYVWKREEHRNASTG 767 (969)
Q Consensus 751 g~I~IWdl~t~~~~~t~ 767 (969)
++|++||+.+++++.+.
T Consensus 215 ~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTC 231 (390)
T ss_pred CcEEEEecccCCccccc
Confidence 99999999998877653
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.00059 Score=79.69 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=118.0
Q ss_pred cCEEEEEEeCCCCE-EEEEeC---CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 452 GSIWTIKFSLDARF-LASAGE---DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 452 ~~I~~l~fSpDg~~-LaTgs~---DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
+.+..-.|+|||+. ++..+. +..|.++|+.+++....
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l--------------------------------------- 228 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI--------------------------------------- 228 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 37889999999984 554443 35688888877655331
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCC--CcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMD--KTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~D--gtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
....+.+....|+| ++.| ++.+.+ ..|.++|+.+++......+........|+
T Consensus 229 -----------------------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 229 -----------------------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFV 285 (419)
T ss_pred -----------------------ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEEC
Confidence 11223344567888 5444 444434 56888899888766554444434456899
Q ss_pred cCCCCEEEEEECC-C--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEEcCCCcee
Q 002086 604 PMDDDYFISGSLD-A--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK---------GSCRLYSIEDSKLH 671 (969)
Q Consensus 604 p~~~~~L~sgs~D-g--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---------g~I~IwDl~~~~~~ 671 (969)
| +++.|+..+.. + .|+++|+.+++...+...... ...|+|+|++|+..... ..|.+.|+.++...
T Consensus 286 P-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 286 E-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred C-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 9 88877766532 3 588889988876554432222 24899999998876543 36888898887643
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc--EEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR--IRILDG 716 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~ 716 (969)
.... . .......|+|+|...+++....+. |.+.++
T Consensus 363 ~LT~---------~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 363 RLTA---------N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred ECCC---------C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 2211 1 122347899999544444433333 444443
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=5.4e-06 Score=89.00 Aligned_cols=140 Identities=13% Similarity=0.287 Sum_probs=105.9
Q ss_pred CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK-----SCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~-----~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
..+.|.++.|.. ++++..|+..|.|...|++.+ .+...+-|...|+++.....++.+|++.+.+|+|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 456788888887 899999999999999999864 57778899999999998876789999999999999999986
Q ss_pred ceE----EEEecCCCCE--EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 627 RLV----VDWTDLHEMV--TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 627 ~~~----~~~~~~~~~V--~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
-+. ....+|-..- .-+-..+....+++++.|...+||.++.+.+.....+.. ......+.+++|..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~----s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY----SASEVDIPSVAFDS 402 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC----ccccccccceehhc
Confidence 544 4455554322 233445566788889999999999999998876543321 23333455566553
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.18 E-value=7.7e-06 Score=86.49 Aligned_cols=206 Identities=18% Similarity=0.286 Sum_probs=136.2
Q ss_pred CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc-EEE----Ee-ec------------CCCeEEEEEecC-CCCEEEE
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS-CLK----LF-AH------------NDYVTCIQFNPM-DDDYFIS 612 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~-~i~----~~-~h------------~~~V~sv~fsp~-~~~~L~s 612 (969)
....|+++.|.. |.+|++|...|.|.++.-.... |.. .| +| ...|..|.|... ....|+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 345789999987 8999999999999999765432 221 11 23 345778888652 2357788
Q ss_pred EECCCeEEEEeCCCceE-------------------------------------E-------EEecCCCCEEEEEEccCC
Q 002086 613 GSLDAKVRIWSISDRLV-------------------------------------V-------DWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~~-------------------------------------~-------~~~~~~~~V~sv~fspdg 648 (969)
.+.|.+|++|.+....+ + ....|..-|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88999999998743210 0 112344457889999887
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeecc-cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc------eE
Q 002086 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT-KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI------VH 721 (969)
Q Consensus 649 ~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~-~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~------~~ 721 (969)
+.++++. |=.|.+|++.-..... ..+.+.. ....-..-|++..|+|.....+.-.+..|.|++-|+++. ..
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeecc-ceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 7777654 6789999876432110 0011100 001123457888999988788888999999999997631 11
Q ss_pred EEEee----------cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 722 KFRGF----------RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~----------~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+... .-...|..+.|+++|+|+++-+. -+|+|||++..
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 11111 11245778999999999998764 48999999874
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=0.00017 Score=84.58 Aligned_cols=211 Identities=15% Similarity=0.132 Sum_probs=137.3
Q ss_pred EeccCCCCEEEEEecC-C------------cEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCC--C-CEEE
Q 002086 549 SFIGHLDDVLDLSWSR-S------------HLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMD--D-DYFI 611 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~------------~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~--~-~~L~ 611 (969)
.+.-|...|+.+.|.| . -+|+++...|.|.+||...+..+..+ .|..++..++|-+.. . ..|+
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence 4455778888888875 1 25777888899999999988877666 677899999998732 2 4677
Q ss_pred EEECCCeEEEEeCCCceEEEEecCC-CCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcee----eeeeeeecccc---
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLH-EMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLH----QLNQVDFQTKK--- 682 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~-~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~----~~~~~~~~~~~--- 682 (969)
+-....+|.+|+..+|+.+-..... ....|+.+.| |.+.+.+-+..|.+.+-+.-..... +..++.-....
T Consensus 130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ 209 (1062)
T KOG1912|consen 130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH 209 (1062)
T ss_pred EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence 7777789999999999877655544 4556799988 5567777777787777765432211 11111100000
Q ss_pred --------------cCCCCC---eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC--CE
Q 002086 683 --------------KSSTRK---ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG--KY 743 (969)
Q Consensus 683 --------------~~h~~~---It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg--~~ 743 (969)
...... ...++|+|.- +.++.......+.++|..-...........+.+.-+.+-|++ ..
T Consensus 210 lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 210 LERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 000001 1235678876 455556677889999965333333322233334455666654 57
Q ss_pred EEEEeCCCcEEEEEcCC
Q 002086 744 IISASEDSQVYVWKREE 760 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t 760 (969)
|++.-.||.+.||-.+.
T Consensus 289 LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEEecCCeEEEEEeec
Confidence 99999999999998765
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.16 E-value=8.5e-06 Score=94.50 Aligned_cols=197 Identities=17% Similarity=0.285 Sum_probs=131.4
Q ss_pred EEEEEecC---CcEEEEEeCCCcEEEEECCCC--cEEE--EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-
Q 002086 557 VLDLSWSR---SHLLLSSSMDKTVRLWDMETK--SCLK--LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL- 628 (969)
Q Consensus 557 I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~--~~i~--~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~- 628 (969)
|-++.|++ ..+-++......-.+|++... +.+. ..+|...|+.+.|+|.....+++++.|-.+..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 34455654 233333334445567887543 2332 338999999999999888999999999999999998753
Q ss_pred -EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 629 -VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 629 -~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
+..+..-......+.|+.....+++.+....|++||++.+..... ..++|...|..+.|..--...+++.+.
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~-------s~K~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC-------SLKGHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE-------EecccceeeehHHHhhhhhhhhcccCC
Confidence 334444556678899998777788888889999999998764321 225688889999988765568999999
Q ss_pred CCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCC
Q 002086 708 DSRIRILDGLDIVHKFR-GFRNTSSQISAAFNAD--GKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspd--g~~LaSgs~Dg~I~IWdl~t 760 (969)
|++|++||..+.....+ ......+|..-.|.|- |.++.---.+..+.+++.++
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 99999999544322111 1223345556666663 33333222233555555443
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=0.00025 Score=80.58 Aligned_cols=241 Identities=14% Similarity=0.250 Sum_probs=144.5
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
=+-+.|||-|.||+|--.-| |.+|--.+-..++.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R--------------------------------------------- 246 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR--------------------------------------------- 246 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHh---------------------------------------------
Confidence 45689999999999998877 78996443222111
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-----------CCcEEEEECCCCcEEEEeec---CCCeE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-----------DKTVRLWDMETKSCLKLFAH---NDYVT 598 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-----------DgtV~IWDl~t~~~i~~~~h---~~~V~ 598 (969)
| .| -.|.-+.||| .++|+|-+. ...++|||+.+|...+.|.. ...++
T Consensus 247 ----------------F-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~W 308 (698)
T KOG2314|consen 247 ----------------F-YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKW 308 (698)
T ss_pred ----------------c-cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcccc
Confidence 1 13 2366788898 788888652 25799999999999888743 22333
Q ss_pred -EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-CCEEEEEEccCCCEEEEEeCC-----CcEE----------
Q 002086 599 -CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-EMVTAACYTPDGQNALIGSHK-----GSCR---------- 661 (969)
Q Consensus 599 -sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-~~V~sv~fspdg~~Lasgs~d-----g~I~---------- 661 (969)
-..|+. ++.+++.-.. ..|.||+..+-.++...... ..|....|+|.++.||--+.. ..+.
T Consensus 309 P~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i 386 (698)
T KOG2314|consen 309 PIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI 386 (698)
T ss_pred ceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence 356887 8888887665 56899988765444333322 456677777776666542211 0122
Q ss_pred ----EEEcCCCceeeeeeee------------------------------ecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 662 ----LYSIEDSKLHQLNQVD------------------------------FQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 662 ----IwDl~~~~~~~~~~~~------------------------------~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
++++.+.++.-+.... +..........|..++|-|.|..+.+..+.
T Consensus 387 Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 387 RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc
Confidence 2222221111100000 000011224567888999998655544443
Q ss_pred --CCcEEEEeCCcceEEEEe--ecCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEcCC
Q 002086 708 --DSRIRILDGLDIVHKFRG--FRNTSSQISAAFNADGKYIISAS---EDSQVYVWKREE 760 (969)
Q Consensus 708 --Dg~I~IwD~~~~~~~~~~--~~~~~~V~sl~fspdg~~LaSgs---~Dg~I~IWdl~t 760 (969)
..++.+|........... .-.....+.+.|+|.|++++.+. ..|.+.++|..-
T Consensus 467 ~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 356888875422111111 11123456899999999998764 468899999874
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.13 E-value=0.0022 Score=69.28 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=123.5
Q ss_pred EEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-
Q 002086 559 DLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL- 635 (969)
Q Consensus 559 ~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~- 635 (969)
+..|.+ +.++++--..+.|..|+..+++..... ... ...+++.. .+..|+.+..++ +.++|+.++++..+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~-~~G~~~~~-~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG-PNGMAFDR-PDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS-EEEEEEEC-TTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC-CceEEEEc-cCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 567876 455666667899999999988665432 222 77888884 346666666655 56669998866544332
Q ss_pred -----CCCEEEEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 636 -----HEMVTAACYTPDGQNALIGSHK--------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 636 -----~~~V~sv~fspdg~~Lasgs~d--------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
....+.+++.++|++.++.... |.|..++.. ++..... ........|+|+|++..++
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~---------~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA---------DGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE---------EEESSEEEEEEETTSSEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe---------cCcccccceEECCcchhee
Confidence 3557899999999977776543 557777776 4432221 1234578999999985556
Q ss_pred EEEeCCCcEEEEeCC--cc----eEEEEeecCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 703 LVTSADSRIRILDGL--DI----VHKFRGFRNT-SSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~--~~----~~~~~~~~~~-~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
++-+..+.|..++.. .. ...+...... ...-.+++..+|++.++.-..+.|.+++-+
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 677888899999853 21 1222222222 236689999999998888889999999976
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.12 E-value=3.4e-05 Score=84.82 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=107.9
Q ss_pred EEEecC-CcEEEEEeCCCcEEEEECCCCc----EEEEeecCCCeEEEEEecCCCCEEEEE---ECCCeEEEEeCCCceEE
Q 002086 559 DLSWSR-SHLLLSSSMDKTVRLWDMETKS----CLKLFAHNDYVTCIQFNPMDDDYFISG---SLDAKVRIWSISDRLVV 630 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----~i~~~~h~~~V~sv~fsp~~~~~L~sg---s~Dg~I~IWDl~~~~~~ 630 (969)
.+.+++ +.+|+.+..++...++++.... ++..+.....-+++.|.. +....+.+ +....+.+|....+...
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCcc
Confidence 344555 6677777777777677765433 333333344445555554 34444433 44455666666668888
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
...+|-..++.++|+||+++|+++..|+.|+|-........ ....-+|...|..++.-++ +.|++++.|++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-------esfclGH~eFVS~isl~~~--~~LlS~sGD~t 216 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-------ESFCLGHKEFVSTISLTDN--YLLLSGSGDKT 216 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-------hhhccccHhheeeeeeccC--ceeeecCCCCc
Confidence 88999999999999999999999999999999776543322 2223679999999999986 47999999999
Q ss_pred EEEEeCCcceE
Q 002086 711 IRILDGLDIVH 721 (969)
Q Consensus 711 I~IwD~~~~~~ 721 (969)
|++||..+...
T Consensus 217 lr~Wd~~sgk~ 227 (390)
T KOG3914|consen 217 LRLWDITSGKL 227 (390)
T ss_pred EEEEecccCCc
Confidence 99999765443
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.01 E-value=0.0048 Score=78.58 Aligned_cols=291 Identities=15% Similarity=0.210 Sum_probs=167.8
Q ss_pred cccCEEEEEEeCCCCEEEEEeC---C---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 450 HEGSIWTIKFSLDARFLASAGE---D---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~---D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.+.-..|+|-.||.|+|+.+. . ..||||+-+ |++....+.....-..+.+.+.+...+..-.
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~---------- 276 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR---------- 276 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE----------
Confidence 5566778999999999998874 2 589999976 6655543322122222222222221110000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEe----ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE-E---EeecC
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSF----IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL-K---LFAHN 594 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l----~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i-~---~~~h~ 594 (969)
.... .....|...+-....| ......|..+.|+. +..|+..-.|. |.+|-..+..-. + .+...
T Consensus 277 ---~~~~----~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~ 348 (928)
T PF04762_consen 277 ---LPDR----HDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS 348 (928)
T ss_pred ---cCCC----cEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC
Confidence 0000 1111222222222222 23556899999998 67777766555 999999876532 1 22344
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeC----CC---------ceE-------E----------------EEecCCCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSI----SD---------RLV-------V----------------DWTDLHEM 638 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl----~~---------~~~-------~----------------~~~~~~~~ 638 (969)
..+..+.|+|.+...|.....+|.+..+++ .. +.+ + ........
T Consensus 349 ~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~ 428 (928)
T PF04762_consen 349 ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSP 428 (928)
T ss_pred CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCC
Confidence 556669999977778888887777766554 11 111 0 22334567
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee------eeeee----cccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 639 VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL------NQVDF----QTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~------~~~~~----~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
|.+++|++++..+++-..||.|.+|.......... ..+.. ..........+..+.|...+ ..+++...+
T Consensus 429 v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 507 (928)
T PF04762_consen 429 VNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD-TLLVLSDSD 507 (928)
T ss_pred cEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCC-EEEEEEecC
Confidence 99999999998899999999999998654432210 00000 00112235567888888776 455555443
Q ss_pred ---CcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 709 ---SRIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 ---g~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+.+++.... ............+..+...++...++.-..||.|+..+...
T Consensus 508 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 508 SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 56777775322 22222233344455555555555577777799988766654
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.98 E-value=0.00015 Score=86.68 Aligned_cols=179 Identities=12% Similarity=0.140 Sum_probs=137.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCC-CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHND-YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAA 642 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~-~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv 642 (969)
...++.|+.-..+..+|+.+.+..+...-.. .|+-|.. ++.++.+|...|+|.+-|.++.+.++ +..|.+.|..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4677778888888899999988887764433 4666665 57899999999999999999987665 55577777655
Q ss_pred EEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 643 CYTPDGQNALIGSH---------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 643 ~fspdg~~Lasgs~---------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
. -.|+.|++++. |.-|+|||++..+.+...++. ....-+.|+|.-...+++++..|...+
T Consensus 224 D--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---------~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 224 D--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---------YGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred e--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---------cCchhhhhcccccceEEEEecccceee
Confidence 4 46888888765 456899999987765433321 112456789988889999999999999
Q ss_pred Ee---CCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 714 LD---GLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 714 wD---~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
-| ..+. ...+..+.....+..++++++|+.|+.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99 3333 44455555666699999999999999999999999998
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=5e-06 Score=97.86 Aligned_cols=203 Identities=16% Similarity=0.209 Sum_probs=133.5
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
-+..++..++|+.|...-+|++|+-+.++|+.|+..|.|+++++.+|........|..++..+...........
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lt------ 1160 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLT------ 1160 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeee------
Confidence 34556667789999999999999999999999999999999999999887766666555443322222111110
Q ss_pred CCcccccCCCCCCCCcccccceeeecC--CCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLS--EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-- 591 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-- 591 (969)
...+.......|... ..+.+.| ..-.++.|+. .+.-+.|.....+.|||++++..+.++
T Consensus 1161 ------------sss~S~PlsaLW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1161 ------------SSSSSSPLSALWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred ------------eccccCchHHHhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence 000111111122221 1222222 2345788887 344455555577999999999877653
Q ss_pred ---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 592 ---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 592 ---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
+....-+++.|+| ++.+++ .|| .+||++..+.+..+..-..-..-.|+|+|..++..++ |||+++.
T Consensus 1225 ~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred cchhhhhhccccccCC-CcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHH
Confidence 3334447889999 777666 355 4799998765554444333445679999999998874 8999998
Q ss_pred ceee
Q 002086 669 KLHQ 672 (969)
Q Consensus 669 ~~~~ 672 (969)
+++.
T Consensus 1294 ~lLh 1297 (1516)
T KOG1832|consen 1294 KLLH 1297 (1516)
T ss_pred HHHh
Confidence 7643
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=4.1e-06 Score=98.51 Aligned_cols=199 Identities=18% Similarity=0.244 Sum_probs=139.6
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCC--eEE
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDA--KVR 620 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg--~I~ 620 (969)
++...|..|+...+|++|+- .++|+.|+..|.|+++++.+|...... .|...|+-+.-+. ++..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 45567888999999999998 789999999999999999999988766 8999999999888 777766654433 467
Q ss_pred EEeCCC-ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 621 IWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 621 IWDl~~-~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+|++.. +...+.+ ..-.++.|+..-+.-+.|+......|||+.++......-.. ..+....-.+..|+|++
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~----~~~~~y~~n~a~FsP~D- 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD----TVTSSYSNNLAHFSPCD- 1242 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc----chhhhhhccccccCCCc-
Confidence 999865 2222222 33457888877667777888889999999998765432111 11222233677899987
Q ss_pred ceEEEEeCCCcEEEEeCCcc--eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccC
Q 002086 700 SEVLVTSADSRIRILDGLDI--VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAS 765 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~--~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~ 765 (969)
.+++ .|| .+||.+.. ++.|..+. --..-.|+|.|.-++.-++ |||+++-+.+.
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft---~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFT---DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLH 1297 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhhhhe---ecccccccCCCceEEeech-----hhhhHHHHHHh
Confidence 4444 233 47886653 23332222 1123469999999998875 99999854443
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00021 Score=79.49 Aligned_cols=254 Identities=16% Similarity=0.173 Sum_probs=168.0
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
-|.+.|+-+.-+ -.+++.+++.||.++.|--..-.-+.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvE----------------------------------------- 44 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVE----------------------------------------- 44 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCcccee-----------------------------------------
Confidence 388888887665 45799999999999999754211111
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCCCcEEEEeecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~ 606 (969)
.+..+..|...|..++.+- +-++.|.+. |..++++|+.+-..+..+........+.|....
T Consensus 45 -----------------fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~sk 107 (558)
T KOG0882|consen 45 -----------------FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSK 107 (558)
T ss_pred -----------------ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCC
Confidence 1124567888888888887 677888777 999999999887665444333333333443312
Q ss_pred C----CEEEEEECCCeEEEEeCCCce--EE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-Cceeee-eeee
Q 002086 607 D----DYFISGSLDAKVRIWSISDRL--VV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQL-NQVD 677 (969)
Q Consensus 607 ~----~~L~sgs~Dg~I~IWDl~~~~--~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~~~~-~~~~ 677 (969)
+ ..-++.-.+|.|.|+|-.... .. ...-|..+|.++.+.+-+..+++....|-|.-|.... .+.... ..+.
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~ 187 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE 187 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccc
Confidence 3 122334457889999987643 22 3334668999999999999999999999999999874 111100 1111
Q ss_pred ec-----ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc--eEEEE--------------------------
Q 002086 678 FQ-----TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI--VHKFR-------------------------- 724 (969)
Q Consensus 678 ~~-----~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~--~~~~~-------------------------- 724 (969)
++ ..........+++.|+|++ ..+.+-+.|..|++++.... .+.+.
T Consensus 188 ~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRma 266 (558)
T KOG0882|consen 188 LKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMA 266 (558)
T ss_pred ccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhh
Confidence 11 1123345678899999998 67888889999999873211 10000
Q ss_pred -----eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 725 -----GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 725 -----~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
........+.+.|...|++|+-|+-=| |++.++.+++.
T Consensus 267 verelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 267 VERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred HHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 001122345688999999999988654 88999988543
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.00057 Score=81.10 Aligned_cols=187 Identities=11% Similarity=0.136 Sum_probs=132.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
.+.|+|++++ +++|+-|..+|.|++.+....- .
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~------------------------------------------- 71 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--K------------------------------------------- 71 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--c-------------------------------------------
Confidence 5678888887 7899999999999999865211 0
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCC----
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMD---- 606 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~---- 606 (969)
....|... -..|.++++|+.||+|.|-.+.+.+....+....++.+|+++| +
T Consensus 72 ------------------~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P-d~~~~ 127 (846)
T KOG2066|consen 72 ------------------TNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP-DFSRQ 127 (846)
T ss_pred ------------------cccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc-chhhh
Confidence 11123222 1127999999999999999999999999999999999999999 4
Q ss_pred -CCEEEEEECCCeEEEEeCC---CceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 607 -DDYFISGSLDAKVRIWSIS---DRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 607 -~~~L~sgs~Dg~I~IWDl~---~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
...+++|+.-| +.++.-+ ....+......++|.++.|. |+++|-+..+| |+|||+...+.....+.+. ..
T Consensus 128 ~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~ 201 (846)
T KOG2066|consen 128 QSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS--QS 201 (846)
T ss_pred hhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCC--CC
Confidence 46899999988 7776532 22333455667899999996 66777777554 8999999887654433222 11
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
.........+.|.+.. .|+.| ...+|+|..+.
T Consensus 202 ~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDED--RLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCcccCCCceEecCCC--eEEEe-cCCeEEEEEEe
Confidence 2233344567788754 45554 44566666544
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.88 E-value=0.0027 Score=67.73 Aligned_cols=193 Identities=15% Similarity=0.149 Sum_probs=105.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
=.-++||||+.+||.+...|+|+++|+...++.. +..... .. +
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~-I~p~~~-------~~--------~--------------------- 88 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFV-IPPAMS-------FP--------G--------------------- 88 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEE-cCcccc-------cC--------C---------------------
Confidence 3578999999999999999999999998644432 111000 00 0
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-------CcEEEEEeCCCcEEEEECCC-----CcEEEEe----ecCCCe
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-------SHLLLSSSMDKTVRLWDMET-----KSCLKLF----AHNDYV 597 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-------~~~L~Sgs~DgtV~IWDl~t-----~~~i~~~----~h~~~V 597 (969)
.-...|-.+.|.+ ...|+.-..+|.++=|-+.. .+....| .+...|
T Consensus 89 ------------------d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 89 ------------------DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred ------------------ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 0112333333332 23566667777777666532 2233333 357789
Q ss_pred EEEEEecCCCCEEEEEECCCe-EEEEeCCCceEEEEecCCCCEEEEEEccCCCE-E-EEEeCCCc------EEEEEcCCC
Q 002086 598 TCIQFNPMDDDYFISGSLDAK-VRIWSISDRLVVDWTDLHEMVTAACYTPDGQN-A-LIGSHKGS------CRLYSIEDS 668 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~-I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~-L-asgs~dg~------I~IwDl~~~ 668 (969)
.++.++| ..++|++|+.... -..+. .....+++-.+-.+..+ . ++...++. ..+|.+-+.
T Consensus 151 ~~~vy~p-~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 151 NSAVYHP-KHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF 219 (282)
T ss_pred eEEEEcC-CCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence 9999999 7777777654322 00000 01111111111111111 0 11111111 122322221
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~ 721 (969)
+. ..........|..+..+|++ ..|++...+|.|.+|++-.+..
T Consensus 220 ~~--------fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 220 KF--------FSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ee--------eeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 11 11113456789999999999 8999999999999999765443
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.85 E-value=3e-05 Score=58.00 Aligned_cols=37 Identities=38% Similarity=0.721 Sum_probs=34.3
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEE
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWD 581 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWD 581 (969)
+++..+.+|.+.|++|+|+| +.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35678999999999999999 79999999999999997
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00086 Score=73.89 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=71.9
Q ss_pred ceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 546 PFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
+...+.+|...|.+++|+| ..++..++.+.+|+|.|+++..++..+.-...+++++|.-.+.++|++|-..|.|.|||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 3446778999999999999 45899999999999999999999988865599999999986778999999999999999
Q ss_pred CCCc
Q 002086 624 ISDR 627 (969)
Q Consensus 624 l~~~ 627 (969)
++..
T Consensus 265 ~R~~ 268 (463)
T KOG1645|consen 265 MRQP 268 (463)
T ss_pred ccCC
Confidence 9753
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.81 E-value=0.0063 Score=64.85 Aligned_cols=145 Identities=15% Similarity=0.087 Sum_probs=92.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC----CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCC-C
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN----DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE-M 638 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~----~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~-~ 638 (969)
+..++.++.++.|+.+|..+|+.+... ... .......... .++.++++..++.|..+|+.+|+++....... .
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 567777778899999999999998774 221 1122223333 47888999989999999999998865443322 1
Q ss_pred ----------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 639 ----------VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 639 ----------V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
+..-.+..++ .++++..++.+.-+|+.+++..... . ...+..+ ....+ ..|++++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~--------~--~~~~~~~-~~~~~-~~l~~~~~~ 221 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK--------P--ISGIYSL-PSVDG-GTLYVTSSD 221 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE--------C--SS-ECEC-EECCC-TEEEEEETT
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe--------c--CCCccCC-ceeeC-CEEEEEeCC
Confidence 1222222344 7777777886444499999854211 1 1112221 23444 567777799
Q ss_pred CcEEEEeCCcceEEE
Q 002086 709 SRIRILDGLDIVHKF 723 (969)
Q Consensus 709 g~I~IwD~~~~~~~~ 723 (969)
+.|..||..+....+
T Consensus 222 ~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 222 GRLYALDLKTGKVVW 236 (238)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCCEEe
Confidence 999999988766544
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.80 E-value=0.00024 Score=84.86 Aligned_cols=164 Identities=15% Similarity=0.249 Sum_probs=125.7
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
|+.+.+..+...--.+.|+=|+. ++++|.+|...|+|.+-|..+.+.+.
T Consensus 163 Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih----------------------------- 211 (1118)
T KOG1275|consen 163 DLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH----------------------------- 211 (1118)
T ss_pred ecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceee-----------------------------
Confidence 55555555555545555766665 47899999999999999988655443
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeC---------CCcEEEEECCCCcE
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSM---------DKTVRLWDMETKSC 587 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~---------DgtV~IWDl~t~~~ 587 (969)
++..|++.|.++... |+.|++++. |.-|+|||++..+.
T Consensus 212 --------------------------------t~~aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 212 --------------------------------TFDAHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred --------------------------------eeeccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 677899999888776 688888874 56789999998887
Q ss_pred EEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe---CCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002086 588 LKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS---ISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662 (969)
Q Consensus 588 i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD---l~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~I 662 (969)
+.-++......-+.|+|.-...+++++..|...+-| +.+.. +.........+..++++++++.++.|..+|.|.+
T Consensus 259 l~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 259 LSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred cCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 776655555577889996677899999999999999 43332 2333334455999999999999999999999999
Q ss_pred EE
Q 002086 663 YS 664 (969)
Q Consensus 663 wD 664 (969)
|.
T Consensus 339 wa 340 (1118)
T KOG1275|consen 339 WA 340 (1118)
T ss_pred ec
Confidence 97
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.78 E-value=0.016 Score=67.22 Aligned_cols=179 Identities=10% Similarity=0.031 Sum_probs=109.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC--------eEEEEEec-CCCCEEEEEECCCeEEEEeCCCceEEEEecC
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY--------VTCIQFNP-MDDDYFISGSLDAKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~--------V~sv~fsp-~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~ 635 (969)
+..++.++.++.+..+|..+|+.+..+....+ ...+..+| ..+..++.++.+|.+..+|+.+++.+-....
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 45677788899999999999987655421110 11111111 0356777788899999999999987644332
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 636 HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.. ...+. ..+..|++++.+|.+..+|..+++..-.... .. ........+. + ..+++++.+|.|+++|
T Consensus 285 ~~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~------~~-~~~~~sp~v~--~-g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 285 GS-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD------LL-HRLLTAPVLY--N-GYLVVGDSEGYLHWIN 351 (394)
T ss_pred CC-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc------cC-CCcccCCEEE--C-CEEEEEeCCCEEEEEE
Confidence 22 11222 2466888888999999999998875432110 00 0111111222 2 4788899999999999
Q ss_pred CCcceEEEEeecCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 716 GLDIVHKFRGFRNTSSQI-SAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~-sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..+.....+.......+. ...+ .+..|+.++.||.|+.+++
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 776554443322222222 1122 3457888899999998875
No 314
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.75 E-value=4e-05 Score=88.31 Aligned_cols=198 Identities=15% Similarity=0.197 Sum_probs=132.9
Q ss_pred CCCCEEEEEecC--C-cEEEEEeCCCcEEEEECCCCcEE---EEeecCCCeEEEEEecCCCCEEEEEE----CCCeEEEE
Q 002086 553 HLDDVLDLSWSR--S-HLLLSSSMDKTVRLWDMETKSCL---KLFAHNDYVTCIQFNPMDDDYFISGS----LDAKVRIW 622 (969)
Q Consensus 553 H~~~I~~l~fs~--~-~~L~Sgs~DgtV~IWDl~t~~~i---~~~~h~~~V~sv~fsp~~~~~L~sgs----~Dg~I~IW 622 (969)
....+.|+++.- + ..++.|..+|.|-+-.++...-- .+-++..+.++++|++.+.+.|++|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 344567787764 3 57888999999999988754322 23378899999999997777888773 35679999
Q ss_pred eCCCce--EE---EEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 623 SISDRL--VV---DWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 623 Dl~~~~--~~---~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
|+.++. +. .+.. ......+++|..+.+++++|.....+.++|++....... ......+..+...|
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---------svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---------SVNTKYVQGITVDP 205 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---------hhhhhhcccceecC
Confidence 998762 11 1222 334566899998889999999999999999984321110 22334566777888
Q ss_pred CCCceEEEEeCCCcEEEEeC-CcceEEEEeecC-----CCCeEEEEEeCCC-CEEEEEeC-CCcEEEEEcCC
Q 002086 697 SNPSEVLVTSADSRIRILDG-LDIVHKFRGFRN-----TSSQISAAFNADG-KYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~-~~~~~~~~~~~~-----~~~V~sl~fspdg-~~LaSgs~-Dg~I~IWdl~t 760 (969)
-.+.+++.- .|+.|.+||. .+....+....+ ...+..++|+|.. ..|++... .++|+++++..
T Consensus 206 ~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 206 FSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 664555554 4999999993 332222221111 2247889999942 34555554 57899999865
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.73 E-value=0.0068 Score=66.44 Aligned_cols=200 Identities=12% Similarity=0.114 Sum_probs=125.5
Q ss_pred EEEecC--CcEEEEEeCCCc-EEEEECCCCcEEEEeecC---CCeEEEEEecCCCCEEEEEEC-----CCeEEEEeCCCc
Q 002086 559 DLSWSR--SHLLLSSSMDKT-VRLWDMETKSCLKLFAHN---DYVTCIQFNPMDDDYFISGSL-----DAKVRIWSISDR 627 (969)
Q Consensus 559 ~l~fs~--~~~L~Sgs~Dgt-V~IWDl~t~~~i~~~~h~---~~V~sv~fsp~~~~~L~sgs~-----Dg~I~IWDl~~~ 627 (969)
.++.+| ...++.+-.-|+ ..+||..+++....+.-. ..----.|++ ++++|++.-. .|.|-|||...+
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcCC
Confidence 455555 345555555554 568999999888766211 1112347898 9999998644 478999999933
Q ss_pred -eE-EEEecCCCCEEEEEEccCCCEEEEEeC------------------CCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 628 -LV-VDWTDLHEMVTAACYTPDGQNALIGSH------------------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 628 -~~-~~~~~~~~~V~sv~fspdg~~Lasgs~------------------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
+. -.+..+.-....+.+.|||+.|+++-. +-.+.+.|..+++++....+. ...|..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp----~~~~~l 163 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP----PDLHQL 163 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC----cccccc
Confidence 33 344444445677889999988877521 224555666777665443221 134677
Q ss_pred CeEEEEEcCCCCceEEEEeCCCc-------EEEEeCCcceEEEEe-----ecCCCCeEEEEEeCCCCEEEE-EeCCCcEE
Q 002086 688 KITGFQFSPSNPSEVLVTSADSR-------IRILDGLDIVHKFRG-----FRNTSSQISAAFNADGKYIIS-ASEDSQVY 754 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~-------I~IwD~~~~~~~~~~-----~~~~~~V~sl~fspdg~~LaS-gs~Dg~I~ 754 (969)
.|..+++.+++ ..++..-..+. |.+++.......+.. ..-..++-+|+++.+|.++++ +=.-+.+.
T Consensus 164 SiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 164 SIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred ceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 89999999987 33333322222 455554443333322 223467889999999987755 44577899
Q ss_pred EEEcCCCCcc
Q 002086 755 VWKREEHRNA 764 (969)
Q Consensus 755 IWdl~t~~~~ 764 (969)
+||..+++.+
T Consensus 243 ~~d~~tg~~~ 252 (305)
T PF07433_consen 243 VWDAATGRLL 252 (305)
T ss_pred EEECCCCCEe
Confidence 9999986443
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.73 E-value=0.0015 Score=80.89 Aligned_cols=195 Identities=14% Similarity=0.200 Sum_probs=135.4
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeC----CC---
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI----SD--- 626 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl----~~--- 626 (969)
+.|.++.|.. ...++.+..+|.|.+-|..+......-.-...|.+++|+| ++..++..+..+++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhccc
Confidence 6899999987 7888889999999999988877666666788999999999 9999988888888766542 00
Q ss_pred --------ceEE---------EEec---------------------CCCCEEEEEEccCCCEEEEE-----eCCCcEEEE
Q 002086 627 --------RLVV---------DWTD---------------------LHEMVTAACYTPDGQNALIG-----SHKGSCRLY 663 (969)
Q Consensus 627 --------~~~~---------~~~~---------------------~~~~V~sv~fspdg~~Lasg-----s~dg~I~Iw 663 (969)
++.+ .+.+ ..+.=+.|+|--||+++++. .....|+||
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0000 0100 11122458999999999983 333799999
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE---eCCCcEEEEeCCcceE---EEEeecCCCCeEEEEE
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT---SADSRIRILDGLDIVH---KFRGFRNTSSQISAAF 737 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg---s~Dg~I~IwD~~~~~~---~~~~~~~~~~V~sl~f 737 (969)
|-+ +.+.... ....+.-.+++|-|.| ..+++. ..|+.|.+|......+ .+........+..++|
T Consensus 228 drE-g~Lns~s--------e~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 228 DRE-GALNSTS--------EPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred ccc-chhhccc--------CcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 987 4432211 2334445678999987 566665 4566799998443222 1222333444889999
Q ss_pred eCCCCEEEE---EeCCCcEEEEEcCC
Q 002086 738 NADGKYIIS---ASEDSQVYVWKREE 760 (969)
Q Consensus 738 spdg~~LaS---gs~Dg~I~IWdl~t 760 (969)
+.++..||+ ......|++|-+.+
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecC
Confidence 999999988 55555699998876
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.0055 Score=72.89 Aligned_cols=186 Identities=13% Similarity=0.138 Sum_probs=110.5
Q ss_pred CcEEEEEe-CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEe--cCCCCEEEEEE------------------CCCeEEE
Q 002086 565 SHLLLSSS-MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFN--PMDDDYFISGS------------------LDAKVRI 621 (969)
Q Consensus 565 ~~~L~Sgs-~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fs--p~~~~~L~sgs------------------~Dg~I~I 621 (969)
+++|..-. ....|-.-++...++-++. .....+..+.|. | +..++++++ ..+.+.+
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 34555544 3455666666655554443 333333333433 2 233333332 2355677
Q ss_pred EeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC----------------------------------------CCcEE
Q 002086 622 WSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH----------------------------------------KGSCR 661 (969)
Q Consensus 622 WDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~----------------------------------------dg~I~ 661 (969)
.|..+.++............+.++++|+++++.+. ++.|.
T Consensus 220 ID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~ 299 (635)
T PRK02888 220 VDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVP 299 (635)
T ss_pred EECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEE
Confidence 77777776655555556677888888888877752 12344
Q ss_pred EEEcCC-----CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-----------Ee
Q 002086 662 LYSIED-----SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-----------RG 725 (969)
Q Consensus 662 IwDl~~-----~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-----------~~ 725 (969)
+.|..+ .+.... ..-......+.++||+...++++..+.+|.|+|+.+....+ ..
T Consensus 300 VID~~t~~~~~~~v~~y---------IPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 300 VVDGRKAANAGSALTRY---------VPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCccccCCcceEEE---------EECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 444443 111111 12245567889999996666667779999999976543211 11
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 726 FRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..-...-...+|+++|....|--.|..|..|++..
T Consensus 371 vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11122234678999999888899999999999986
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.63 E-value=0.039 Score=60.60 Aligned_cols=231 Identities=13% Similarity=0.116 Sum_probs=141.9
Q ss_pred EEEEeC-CCCEEEEEeCCC-cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 456 TIKFSL-DARFLASAGEDR-VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 456 ~l~fSp-Dg~~LaTgs~Dg-tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
.++.+| ++..++.+-.-| ...+||..+++....+..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a------------------------------------------ 46 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA------------------------------------------ 46 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC------------------------------------------
Confidence 567777 555666776655 467899998887664321
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-----CCCcEEEEECC-CCcEEEEe-ecCCCeEEEEEecC
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-----MDKTVRLWDME-TKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-----~DgtV~IWDl~-t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
.+-..|.|| -.|++ +++|++.- ..|.|-|||.. +.+.+..+ .|.-.-..|.+.|
T Consensus 47 -----------~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p- 108 (305)
T PF07433_consen 47 -----------PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP- 108 (305)
T ss_pred -----------CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-
Confidence 112267777 56888 77887763 45889999999 55666666 4554556677888
Q ss_pred CCCEEEEEE------------------CCCeEEEEeCCCceEEEEec-----CCCCEEEEEEccCCCEEEEEeCCC----
Q 002086 606 DDDYFISGS------------------LDAKVRIWSISDRLVVDWTD-----LHEMVTAACYTPDGQNALIGSHKG---- 658 (969)
Q Consensus 606 ~~~~L~sgs------------------~Dg~I~IWDl~~~~~~~~~~-----~~~~V~sv~fspdg~~Lasgs~dg---- 658 (969)
++..|+++. .+-.+.+.|..+++++.... +...|..+++.++|..++..-..|
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 786666652 23456667778888776532 446799999999987666554433
Q ss_pred ---cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEE
Q 002086 659 ---SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISA 735 (969)
Q Consensus 659 ---~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl 735 (969)
.+.+++-.. ......... .........|-+|++++++....+++-..+.+.+||..+....-.. ....+..+
T Consensus 189 ~~PLva~~~~g~--~~~~~~~p~-~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGv 263 (305)
T PF07433_consen 189 APPLVALHRRGG--ALRLLPAPE-EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGV 263 (305)
T ss_pred cCCeEEEEcCCC--cceeccCCh-HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeee
Confidence 233333222 111111110 1113445778999999988444455556788999996654432221 22234556
Q ss_pred EEeCCCCEEEEEeCCCcE
Q 002086 736 AFNADGKYIISASEDSQV 753 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I 753 (969)
+-.+++ ++++.+ .|.+
T Consensus 264 a~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 264 APTDDG-FLVSSG-QGQL 279 (305)
T ss_pred eecCCc-eEEeCC-CccE
Confidence 666666 666655 4443
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.62 E-value=0.0017 Score=75.39 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=84.4
Q ss_pred EEecCCCCEEEEEEccC-CCEEEEE----eCCCc----EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 631 DWTDLHEMVTAACYTPD-GQNALIG----SHKGS----CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspd-g~~Lasg----s~dg~----I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
..........++.|+-. ...+.+. +.+|. ..+|++...++....... ......+.+++++|+. ..
T Consensus 200 ~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvts-----ipL~s~v~~ca~sp~E-~k 273 (545)
T PF11768_consen 200 SYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTS-----IPLPSQVICCARSPSE-DK 273 (545)
T ss_pred EEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEE-----EecCCcceEEecCccc-ce
Confidence 33334444566666652 3333332 23442 356777766554332221 3567789999999988 89
Q ss_pred EEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 702 VLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
++.|+.||.|.+||.......+.. ..-..+.++|+|+|.++++|+..|.|.+||+.-
T Consensus 274 LvlGC~DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRGVTLLAK--AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEecCCeEEEEEcCCCeeeeee--ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 999999999999997665544432 234467899999999999999999999999864
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0015 Score=77.68 Aligned_cols=184 Identities=14% Similarity=0.101 Sum_probs=127.8
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD 634 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~ 634 (969)
..+.|++++ +.+|+-|+.+|.|++.+..... ...+.|... .. +|.++++|+.||+|.|..+-+.+......
T Consensus 40 D~is~~av~-~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 40 DAISCCAVH-DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hHHHHHHhh-cceeeeccccceEEEEecCCcc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccceeEe
Confidence 455666666 5899999999999999987554 444555544 33 79999999999999999999998888888
Q ss_pred CCCCEEEEEEccC-----CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 635 LHEMVTAACYTPD-----GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 635 ~~~~V~sv~fspd-----g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
...++.+++++|+ .+.+++|+..| +.++.-.-...... + ......++|.++.|.. .+++-..|-
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~--v----~l~~~eG~I~~i~W~g----~lIAWand~ 179 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS--V----VLSEGEGPIHSIKWRG----NLIAWANDD 179 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc--e----eeecCccceEEEEecC----cEEEEecCC
Confidence 8899999999997 57899999988 77765331111000 0 1245678999999974 344455566
Q ss_pred cEEEEeCCcceEEEEeecC------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 710 RIRILDGLDIVHKFRGFRN------TSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 710 ~I~IwD~~~~~~~~~~~~~------~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.|++||+............ ...-..+.|.++.++++ |= -.+|+|..++.
T Consensus 180 Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 180 GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GW-GDSVKICSIKK 234 (846)
T ss_pred CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ec-CCeEEEEEEec
Confidence 6899996554333222111 11223577877665444 33 33799998883
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0012 Score=72.83 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=64.4
Q ss_pred ceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
++..+-+.+|...|..|+|||..+ +|..++.+.+|+|.|+++..++..
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss------------------------------- 231 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS------------------------------- 231 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------------------
Confidence 334556889999999999999877 788999999999999987655442
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMET 584 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t 584 (969)
+..| ..+++++|.- .++|+.|...|.|.|||++.
T Consensus 232 ------------------------------y~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 232 ------------------------------YIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ------------------------------eecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 2234 6778888875 57888888888888888864
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.024 Score=68.28 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=98.4
Q ss_pred cEEEEEeCCC-----cEEEEECCC------CcEE---EEee-----cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC-
Q 002086 566 HLLLSSSMDK-----TVRLWDMET------KSCL---KLFA-----HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS- 625 (969)
Q Consensus 566 ~~L~Sgs~Dg-----tV~IWDl~t------~~~i---~~~~-----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~- 625 (969)
.+|++.+.|+ .|+|||++. .+|+ ..+. ...++.+++++. +-..+|+|-.+|.|..+.-.
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcc
Confidence 5777777665 499999863 3455 3333 345788999998 78899999999999988532
Q ss_pred --C--ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 626 --D--RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 626 --~--~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
. .+.........+|+.+++..++..++.......|.+|.+.+.. ... .....+...+.|..|++..++
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~------~~ld~~G~~lnCss~~~~t~q- 228 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSL------KVLDNNGISLNCSSFSDGTYQ- 228 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cce------eeeccCCccceeeecCCCCcc-
Confidence 1 1223334456889999999999885555556789999998544 111 112677888999999986532
Q ss_pred EEEEeCCCcEEEEeCCc
Q 002086 702 VLVTSADSRIRILDGLD 718 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~ 718 (969)
+++ +....|++|+...
T Consensus 229 fIc-a~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 229 FIC-AGSEFLYFYDSDG 244 (933)
T ss_pred EEE-ecCceEEEEcCCC
Confidence 333 3456788898654
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.53 E-value=0.019 Score=71.45 Aligned_cols=240 Identities=13% Similarity=0.143 Sum_probs=145.9
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
..+.|.++.|..++.-++.+..+|.|.+-|.++.....
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei------------------------------------------ 104 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI------------------------------------------ 104 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee------------------------------------------
Confidence 34789999999999989999999999998877644321
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEEC----CCCcEE----------------
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDM----ETKSCL---------------- 588 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl----~t~~~i---------------- 588 (969)
...-...|.+++|+| .+.++..+.+++|.+-.- -..+.+
T Consensus 105 --------------------vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwG 164 (1265)
T KOG1920|consen 105 --------------------VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWG 164 (1265)
T ss_pred --------------------eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceeccc
Confidence 112345788999998 677777787777776543 111111
Q ss_pred ---EEe-e------------c---------CCCeEEEEEecCCCCEEEEEE----CC-CeEEEEeCCCceEEEEec-CCC
Q 002086 589 ---KLF-A------------H---------NDYVTCIQFNPMDDDYFISGS----LD-AKVRIWSISDRLVVDWTD-LHE 637 (969)
Q Consensus 589 ---~~~-~------------h---------~~~V~sv~fsp~~~~~L~sgs----~D-g~I~IWDl~~~~~~~~~~-~~~ 637 (969)
..| + + .+.=++|.|-- ++.+|++.. .+ .+|+|||-. +.+-.... ...
T Consensus 165 rkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~ 242 (1265)
T KOG1920|consen 165 RKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEG 242 (1265)
T ss_pred ccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccc
Confidence 011 0 0 11123578876 888888732 23 789999987 44332222 223
Q ss_pred CEEEEEEccCCCEEEEE---eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE---EeCCCcE
Q 002086 638 MVTAACYTPDGQNALIG---SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV---TSADSRI 711 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasg---s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s---gs~Dg~I 711 (969)
.-.+++|-|.|..+++- +.++.|.+|.-..... .. +..........|..++|+.++ ..|++ ......|
T Consensus 243 l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g~----f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v 316 (1265)
T KOG1920|consen 243 LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-GE----FVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLV 316 (1265)
T ss_pred cccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-cc----cccCCcccccchheeeecCCC-CceeeeecccccceE
Confidence 45689999999998874 3456788887654321 11 112223344559999999987 56666 3444559
Q ss_pred EEEeCCcceEEEEeecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcC
Q 002086 712 RILDGLDIVHKFRGFRNTSSQISAAFNADG-KYIISASEDSQVYVWKRE 759 (969)
Q Consensus 712 ~IwD~~~~~~~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~ 759 (969)
++|-..+..-.++.........-+.|+|.. ..|..-..+|.+.++++.
T Consensus 317 ~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 317 QLWTTGNYHWYLKQELQFSQKALLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEEecCeEEEEEEEEeccccccccccCCCceeEEEEecCCcEEEEEEE
Confidence 999977643333221111111126777732 334444466666665543
No 324
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.49 E-value=0.013 Score=68.20 Aligned_cols=190 Identities=13% Similarity=0.070 Sum_probs=115.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEE--
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAA-- 642 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv-- 642 (969)
+..++.++.++.|..+|..+|+.+-.......+.+--.. .+..++.+..++.|..+|..+++.+-......+...+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 567778889999999999999988776544444332111 2466777888999999999999887554433211100
Q ss_pred EEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC--CCCceEEEEeCCCcEEEEeCCc
Q 002086 643 CYTP--DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP--SNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 643 ~fsp--dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp--d~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
.-+| .+..+++++.+|.+..+|..+++......+..... .........+..+| .+ ..+++++.++.++.+|..+
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~-~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG-ATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCC-ccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCC
Confidence 0111 23467778889999999999887643322110000 00000011111112 12 4677778899999999776
Q ss_pred ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 719 IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 719 ~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.....+.... ....+ ..++..|+.++.+|.|+.+|..+++
T Consensus 276 G~~~W~~~~~--~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 276 GQIVWKREYG--SVNDF--AVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred CCEEEeecCC--CccCc--EEECCEEEEEcCCCeEEEEECCCCc
Confidence 5544433211 11112 2246678888899999999998853
No 325
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.47 E-value=0.047 Score=58.93 Aligned_cols=204 Identities=17% Similarity=0.265 Sum_probs=117.7
Q ss_pred EeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEECCCeEEEEeC
Q 002086 549 SFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl 624 (969)
.+.+-...+..|+|.| +.++++....+.|...+.. |+.+..+. -.+..-.|++.. ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 4556667799999998 5577777888999888974 77777763 345788899975 5555554445899999998
Q ss_pred CCc----eE---EEE----e-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC---Cceee-eeeeeecccccCCCCC
Q 002086 625 SDR----LV---VDW----T-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED---SKLHQ-LNQVDFQTKKKSSTRK 688 (969)
Q Consensus 625 ~~~----~~---~~~----~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~---~~~~~-~~~~~~~~~~~~h~~~ 688 (969)
... .. ..+ . ..+..+-.++|++.++.|+++-+..-..||.+.. ..... .....+. ........
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD-DDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc-cccceecc
Confidence 331 11 111 1 1335589999999988888888888778887764 11111 1111111 12345567
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecC-------CCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRN-------TSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~-------~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
+.++.++|..+.+++.......|..+|.... ...+..... -...-.|+|.++|++.++ ++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8999999988788888888999999995433 233332221 123568999999865544 466666655
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.43 E-value=0.00089 Score=77.67 Aligned_cols=112 Identities=17% Similarity=0.317 Sum_probs=83.4
Q ss_pred CEEEEEecC--CcEEEEE----eCCCc----EEEEECCCCcEE----EEeecCCCeEEEEEecCCCCEEEEEECCCeEEE
Q 002086 556 DVLDLSWSR--SHLLLSS----SMDKT----VRLWDMETKSCL----KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRI 621 (969)
Q Consensus 556 ~I~~l~fs~--~~~L~Sg----s~Dgt----V~IWDl~t~~~i----~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~I 621 (969)
...++.|+. +..+.|. +.+|. -.+|++...+.. ..+.....|.|++++| +...|+.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 345666664 3444443 33443 345666655432 2347899999999999 9999999999999999
Q ss_pred EeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 622 WSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 622 WDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
||...+... .....-.++.++|+|+|..|++|+..|.+.+||+.-..
T Consensus 286 yD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999876433 33445668899999999999999999999999987543
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.37 E-value=0.02 Score=66.11 Aligned_cols=276 Identities=12% Similarity=0.086 Sum_probs=137.4
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.|+.+.|.++..-|+.|-..|.|.||.+...+.... ....+.....+... ........ .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~-----l 61 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN--REQPPDLDYNFRRF--------------SLNNSPGK-----L 61 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S----------------GGGSS-S-----E
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc--cCCCcccCcccccc--------------cccCCCcc-----e
Confidence 589999999988999999999999999875433210 00000000000000 00000000 0
Q ss_pred ccccce---eeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe---e------cCCCeEEE
Q 002086 533 VHVPET---VFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF---A------HNDYVTCI 600 (969)
Q Consensus 533 ~~~~~~---v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~------h~~~V~sv 600 (969)
...... -....-.|...+....++|++++.+.=.+++.|..+|.+.|.|++....+..- . ....|+++
T Consensus 62 ~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 62 TDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp EE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred EEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 000000 00001235556667789999999998789999999999999999888877653 1 23468889
Q ss_pred EEecC----CC---CEEEEEECCCeEEEEeCC--C-c----eEEEEe-cCCCCEEEEE-EccC-----------------
Q 002086 601 QFNPM----DD---DYFISGSLDAKVRIWSIS--D-R----LVVDWT-DLHEMVTAAC-YTPD----------------- 647 (969)
Q Consensus 601 ~fsp~----~~---~~L~sgs~Dg~I~IWDl~--~-~----~~~~~~-~~~~~V~sv~-fspd----------------- 647 (969)
.|.-. ++ -.+++|...|.+.+|.+. . + +..... .+...|..+. |+.+
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 88631 22 378899999999999874 1 1 112222 3445555554 3211
Q ss_pred ---CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc----CCCCceEEEEeCCCcEEEEeCCcce
Q 002086 648 ---GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS----PSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 648 ---g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs----pd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
-..+++...+..++++...+.+..... .........+.+- ..+...|++-..+|.|++|.+-.+.
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~~~K~--------~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKGAHKS--------FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred CCCcCcEEEEEcccceEEEeCCCCccccee--------eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 123555566888999998877653321 1111122233342 1233577777999999999977655
Q ss_pred EEEEeecC----CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 721 HKFRGFRN----TSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 721 ~~~~~~~~----~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
........ ...+...+|+++|..++-.+. ..+.++.+
T Consensus 294 ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 294 EIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred HhhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 44433221 112334566777776555543 33444433
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.015 Score=70.04 Aligned_cols=189 Identities=12% Similarity=0.144 Sum_probs=118.5
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC-eEEEEEecCCCCEEEEEECCCe-----EEEEeCCCc------eEE--
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY-VTCIQFNPMDDDYFISGSLDAK-----VRIWSISDR------LVV-- 630 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~-V~sv~fsp~~~~~L~sgs~Dg~-----I~IWDl~~~------~~~-- 630 (969)
+..++.|+.+|.|.+.+-.-........+... |+.+.... ..++|++.+.|+. |+|||+..- +++
T Consensus 35 ~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~ 113 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYE 113 (933)
T ss_pred CceEEEeeccccEEEecccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCcceeee
Confidence 78999999999998887543221222244444 55544443 4468888777754 899998542 222
Q ss_pred -EEecC-----CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 631 -DWTDL-----HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 631 -~~~~~-----~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
....+ ..++.+++.+.+-+.+|+|-.+|.|..+.-.-.+-.... . .-......+|+++++..++... +-
T Consensus 114 ~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr---~-~~~~~~~~pITgL~~~~d~~s~-lF 188 (933)
T KOG2114|consen 114 HRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR---Q-DYSHRGKEPITGLALRSDGKSV-LF 188 (933)
T ss_pred eeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc---e-eeeccCCCCceeeEEecCCcee-EE
Confidence 22332 356889999999999999999999998853211110000 0 0113457899999999888543 33
Q ss_pred EeCCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 705 TSADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
...-..|.+|.+........ .-.+...+.|..|++....+++++ +..|++|+.+.
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 33445667776543222233 334566778888887555455555 45799999885
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.28 E-value=0.025 Score=66.01 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=116.2
Q ss_pred ceeEeccCCCCEEEEEecC-CcEEEEE---eCC-CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCCe-
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SHLLLSS---SMD-KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDAK- 618 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~~L~Sg---s~D-gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg~- 618 (969)
....+..-...+..-+|++ +..++.. ... ..+.++|+.+++........+.-..-+|+| ++.+|+ +...||.
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~ 262 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSP 262 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCc
Confidence 3334444555666777887 4333322 222 469999999998877776666666779999 776655 4555665
Q ss_pred -EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 619 -VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 619 -I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
|+++|+.++....+....+.-..-.|+|+|++++..+. .| .|.+++......... ......-..-.|
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri---------T~~~~~~~~p~~ 333 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL---------TFSGGGNSNPVW 333 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe---------eccCCCCcCccC
Confidence 77778888776665554444457789999999887654 44 567777776654221 111112226679
Q ss_pred cCCCCceEEEEeCCCc--EEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 695 SPSNPSEVLVTSADSR--IRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~--I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
+|++...++....+|. |.+.|...... ............-+|.++|+.++..+.-
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 9999544444533455 55555433221 2222223333355678888777655543
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0065 Score=72.28 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=59.0
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~ 625 (969)
+++++|+| .-.|+.|-.-|.+.+|...+.+..... .|..+|..+.|++ +|+.++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 34699999 566777888899999999887766655 7999999999999 99999999999999999865
No 331
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.24 E-value=0.098 Score=57.33 Aligned_cols=194 Identities=16% Similarity=0.224 Sum_probs=107.4
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEE---------------EeecCCCeEEEE-EecCCCCEEEEEECCCeE
Q 002086 557 VLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLK---------------LFAHNDYVTCIQ-FNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 557 I~~l~fs~~-~~L~Sgs~DgtV~IWDl~t~~~i~---------------~~~h~~~V~sv~-fsp~~~~~L~sgs~Dg~I 619 (969)
|..+...+. +.|++- .|+.|.++++..-.... .+.....+...+ -....+...+++....+|
T Consensus 38 I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 888888873 333333 45999999987644333 223334455555 112244455555556689
Q ss_pred EEEeCCCc-----eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc----cccCCCCCeE
Q 002086 620 RIWSISDR-----LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT----KKKSSTRKIT 690 (969)
Q Consensus 620 ~IWDl~~~-----~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~----~~~~h~~~It 690 (969)
.+|..... ...........+..++|. ++.+++|..+ ...+.|+.++............ .......++.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG 193 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE
Confidence 98888653 345556677889999998 5678888744 5888999877654433211100 0111223444
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCC-cceE--EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGL-DIVH--KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~~~--~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
.+.... + .+|+ +..+-.+ +.|.. .... .+.. .....++++. ..||+..+.+ .|.||++.+++.+
T Consensus 194 ~~~~~~-~-e~Ll-~~~~~g~-fv~~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lv 260 (275)
T PF00780_consen 194 IFQLSD-N-EFLL-CYDNIGV-FVNKNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELV 260 (275)
T ss_pred EEEeCC-c-eEEE-EecceEE-EEcCCCCcCcccEEEc---CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEE
Confidence 444443 3 3443 3333222 33322 2211 1111 1234455553 4588887764 5999999996443
No 332
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.21 E-value=0.068 Score=60.20 Aligned_cols=177 Identities=12% Similarity=0.164 Sum_probs=109.5
Q ss_pred CcEEEEEeC----------CCcEEEEECCCC-----cEE--EEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 565 SHLLLSSSM----------DKTVRLWDMETK-----SCL--KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 565 ~~~L~Sgs~----------DgtV~IWDl~t~-----~~i--~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
..+|+.|.. .|.|.++++... +.. ......++|++|+-. .+. |+++. ++.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCc
Confidence 357776652 288999999984 222 233678999999986 344 44443 588999999887
Q ss_pred e-EEEEecCC--CCEEEEEEccCCCEEEEEeCCCcEEEEEcCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 628 L-VVDWTDLH--EMVTAACYTPDGQNALIGSHKGSCRLYSIED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 628 ~-~~~~~~~~--~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
+ +....... ..+.++... ++++++|.....+.++.... .++.... .......++++.|-+++ ..+
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va-------~d~~~~~v~~~~~l~d~-~~~ 187 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVA-------RDYQPRWVTAAEFLVDE-DTI 187 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEE-------EESS-BEEEEEEEE-SS-SEE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEE-------ecCCCccEEEEEEecCC-cEE
Confidence 7 65544433 345555554 66999999989888885543 2222111 13345668999998777 599
Q ss_pred EEEeCCCcEEEEeCCc----------ceEEEEeecCCCCeEEE---EEeC--CCC------EEEEEeCCCcEEE
Q 002086 703 LVTSADSRIRILDGLD----------IVHKFRGFRNTSSQISA---AFNA--DGK------YIISASEDSQVYV 755 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~----------~~~~~~~~~~~~~V~sl---~fsp--dg~------~LaSgs~Dg~I~I 755 (969)
+++..+|.|.++.... .......+.....|+++ ++.| .+. .++.++.+|.|.+
T Consensus 188 i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9999999999987321 22233334444567766 4445 222 4888889999884
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.20 E-value=0.041 Score=63.63 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=119.8
Q ss_pred CEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE--------------------------E-----------------EEe
Q 002086 556 DVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC--------------------------L-----------------KLF 591 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~--------------------------i-----------------~~~ 591 (969)
.|+.+.|.+ ...|+.|...|.|.||.+...+. + ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 477888887 67888899999999886532110 0 011
Q ss_pred -ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC---------CCCEEEEEEcc-----CC---CEEEE
Q 002086 592 -AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL---------HEMVTAACYTP-----DG---QNALI 653 (969)
Q Consensus 592 -~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~---------~~~V~sv~fsp-----dg---~~Las 653 (969)
...++|++++.+ +=.+++.|..+|.+.|.|++...++..... ...++++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 246889999997 578999999999999999998887754221 23588888873 33 46889
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE-EcCCC-------------------CceEEEEeCCCcEEE
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ-FSPSN-------------------PSEVLVTSADSRIRI 713 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~-fspd~-------------------~~~l~sgs~Dg~I~I 713 (969)
|+..|.+.+|.+.-... ..+.+.+......+..+|..+. |+.+. -..+++...+..|++
T Consensus 161 GTn~G~v~~fkIlp~~~-g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSN-GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EETTSEEEEEEEEE-GG-G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EeCCCCEEEEEEecCCC-CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999998852100 0111112222234455555554 32221 023566667888999
Q ss_pred EeCCcceEEEEeecCCCCeEEEEEe-----CCCCEEEEEeCCCcEEEEEcCCC
Q 002086 714 LDGLDIVHKFRGFRNTSSQISAAFN-----ADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 714 wD~~~~~~~~~~~~~~~~V~sl~fs-----pdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+...+.....+.+........+.+- ..+..|++-..+|.|++|.+..-
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 9977665555555332333345552 35678889999999999999874
No 334
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.19 E-value=0.0058 Score=75.17 Aligned_cols=147 Identities=20% Similarity=0.193 Sum_probs=101.7
Q ss_pred CCEEEEE-ECCCeEEEEeCCCceEEEEecCCCCEEEEEEccC-------CCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 607 DDYFISG-SLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPD-------GQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 607 ~~~L~sg-s~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspd-------g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
.++|+.- .....|+-.|+..|+++........+.-..|.|+ ....++|-.+..+..||.+-.... .+.-
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k---~v~~ 569 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK---LVDS 569 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc---eeec
Confidence 3444433 3457899999999999876665554445556554 345678888999999999864311 0111
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..+........+|++-..+| +|++|+.+|.||+||......+........+|+.|..+.||++|++.+ +..|.|++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 12223455678888888776 999999999999999443323333334467899999999999988777 567888876
Q ss_pred C
Q 002086 759 E 759 (969)
Q Consensus 759 ~ 759 (969)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 4
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.18 E-value=0.00085 Score=47.75 Aligned_cols=38 Identities=34% Similarity=0.761 Sum_probs=34.4
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWD 479 (969)
+....+.+|...|+++.|.+++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45567789999999999999999999999999999996
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.16 E-value=0.00027 Score=81.68 Aligned_cols=162 Identities=15% Similarity=0.238 Sum_probs=107.3
Q ss_pred eccCCCCEEEEEecC-C-cEEEEEe----CCCcEEEEECCCCc--EEE---Ee-ecCCCeEEEEEecCCCCEEEEEECCC
Q 002086 550 FIGHLDDVLDLSWSR-S-HLLLSSS----MDKTVRLWDMETKS--CLK---LF-AHNDYVTCIQFNPMDDDYFISGSLDA 617 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~-~~L~Sgs----~DgtV~IWDl~t~~--~i~---~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg 617 (969)
..+|....++++|++ + +.|++|- .|..+.|||+.++- +.. .. +......+++|.. +..++++|....
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr 176 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSR 176 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccc
Confidence 346778889999998 4 5666652 46789999998872 211 11 2445667899986 888999999999
Q ss_pred eEEEEeCCCceEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEc-CCCceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 618 KVRIWSISDRLVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSI-EDSKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl-~~~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
.+.++|++........-....+..+.+.| .+.+++.-. ||.|.+||. +.-+... .. ...........+..++|+
T Consensus 177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl-~~--i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL-QI--ILRNENKKPKQLFALAYC 252 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH-HH--HhhCCCCcccceeeEEec
Confidence 99999998543222222223456677888 667777665 999999994 2222110 00 111112233469999999
Q ss_pred CCCCceEEEEeCC-CcEEEEeC
Q 002086 696 PSNPSEVLVTSAD-SRIRILDG 716 (969)
Q Consensus 696 pd~~~~l~sgs~D-g~I~IwD~ 716 (969)
|.....+++...| ++|+++|+
T Consensus 253 Ptrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred cCCcchhhhhccCcceEEEecc
Confidence 9876777777665 57999984
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.12 E-value=0.12 Score=60.63 Aligned_cols=180 Identities=10% Similarity=0.110 Sum_probs=88.8
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCC
Q 002086 558 LDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE 637 (969)
Q Consensus 558 ~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~ 637 (969)
..++|...+.+++-...++|.|+.--.....+.+.....+..|-. |.+|+..+. +.|.+||+.+++++.......
T Consensus 72 ~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~ 146 (443)
T PF04053_consen 72 LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRRIDVSA 146 (443)
T ss_dssp SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS-E
T ss_pred eEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeEEecCC
Confidence 457787767788887788999963222222222322223444332 566666654 489999999999998887765
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCC------------ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDS------------KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~------------~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
|..+.|+++|++++..+.+ .+.|++.... ..... ..-...|.+.+|..+ -++.+.
T Consensus 147 -vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~---------~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 147 -VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI---------HEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp --EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE---------EEE-S--SEEEEETT--EEEEE-
T ss_pred -CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE---------EEecceeEEEEEEcC--EEEEEc
Confidence 8999999999999988754 6777765433 11111 111345666677653 233333
Q ss_pred eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 706 SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 706 s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.. .|+.+-..+ ...+... ..++.=+.+.+..+.|.....|+.|..+.++.
T Consensus 214 -~~-~lkYl~~Ge-~~~i~~l--d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 214 -SN-HLKYLVNGE-TGIIAHL--DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -TT-EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred -CC-eEEEEEcCC-cceEEEc--CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 22 555433221 1112222 22344455666667777778888888877764
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.06 E-value=0.089 Score=55.51 Aligned_cols=220 Identities=13% Similarity=0.073 Sum_probs=129.6
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
...+++.|+..+.+.-.|..+|.+.-.......+.+-+.- -|++++.|+..|.+++.+..++.........
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-------- 92 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-------- 92 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence 4578888999999999999999888766666666554444 4678999999999999999999665443321
Q ss_pred CCCeE-EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 686 TRKIT-GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 686 ~~~It-~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
..|. .....+++ ..+..|+.|++.+..|.......++.........+-++.| ++. |..+...|.|.--..++..
T Consensus 93 -~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~~- 168 (354)
T KOG4649|consen 93 -ETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPYS- 168 (354)
T ss_pred -hhhccceEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccCCCC-
Confidence 1111 12345555 7999999999999999888887777554444334445566 443 3333344444433333210
Q ss_pred cCCCceeEEecccCCce---eeeeeEEe--ecCCCcccCCCCCccEEEcccccccCCCCcccccC-CCCCCccccCCCCc
Q 002086 764 ASTGKRAIITTRNHEHF---QCKDVSVA--IPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSS-PTKEGSPAGHSRRL 837 (969)
Q Consensus 764 ~~t~k~~~~~~~~~~~~---~~~~~s~~--~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~S-P~~~~i~~~~~~~~ 837 (969)
...+....+....| .|..-++. .....+++-++.+.++|..... ++-+..++.| |..+-+++..++=.
T Consensus 169 ---~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~---GpIf~~Pc~s~Ps~q~i~~~~~~Cf 242 (354)
T KOG4649|consen 169 ---STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATK---GPIFMEPCESRPSCQQISLENENCF 242 (354)
T ss_pred ---cceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCC---CceecccccCCCcceEEEEecCCeE
Confidence 01111111111111 12222222 2333344445667777744433 2234444444 76666776666666
Q ss_pred cccCCCC
Q 002086 838 LPPLPKK 844 (969)
Q Consensus 838 L~~~~~~ 844 (969)
.++.|-.
T Consensus 243 ~~~~p~~ 249 (354)
T KOG4649|consen 243 CAPLPIA 249 (354)
T ss_pred EEecccc
Confidence 6555543
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.05 E-value=0.12 Score=58.32 Aligned_cols=173 Identities=22% Similarity=0.310 Sum_probs=114.0
Q ss_pred CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCC------CCEEEEEEC----------CCeEEEEeCCCc-----e--E
Q 002086 575 KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMD------DDYFISGSL----------DAKVRIWSISDR-----L--V 629 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~------~~~L~sgs~----------Dg~I~IWDl~~~-----~--~ 629 (969)
..|++.|..+.+.+..+ .....+.+++..... ..+|++|.. .|.|.++++... + .
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36889999988888766 444556655543311 457777653 288999999884 2 3
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 630 VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 630 ~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~-~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
+......++|++++-- ++ +|+++. .+.|.+|++...+ +...... .....++++.... .++++|...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~-------~~~~~i~sl~~~~---~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY-------DSPFYITSLSVFK---NYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEET---TEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhee-------cceEEEEEEeccc---cEEEEEEcc
Confidence 3445567889998877 33 455544 5899999999888 4433322 1223677777664 489999888
Q ss_pred CcEEEE--eCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 709 SRIRIL--DGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 g~I~Iw--D~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+.++ +.... ...+........++++.|-+|+..++.+..+|.|.++....
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 888876 43222 33333333456688999987778999999999999999974
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.00 E-value=0.52 Score=52.62 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=109.7
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC-CceEEE----Eec-CCCCE-EEEEEcc
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS-DRLVVD----WTD-LHEMV-TAACYTP 646 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~-~~~~~~----~~~-~~~~V-~sv~fsp 646 (969)
-..|-|-|+..++.+..+.-.+...- -|..+.-|.+-+.||.+....+. .|+... .+. ..+++ ..-++..
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTSEEEE---EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred CCeEEEEECCCCceeeeecCCCEEEE---EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 34578888888888877765553332 23234678899999999999887 444332 111 12222 2344555
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe--C-----CC--cEEE
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS--A-----DS--RIRI 713 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs--~-----Dg--~I~I 713 (969)
.+..++.-+.+|.|+-.|+..........+.+... .....+...-+++++....+++.-. . |+ .|.+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 66677778899999999998887655544443221 1222344455677765534443321 1 22 2666
Q ss_pred EeCCcceEEEEeecCCCCeEEEEEeCCCC-EEEEE-eCCCcEEEEEcCCCC
Q 002086 714 LDGLDIVHKFRGFRNTSSQISAAFNADGK-YIISA-SEDSQVYVWKREEHR 762 (969)
Q Consensus 714 wD~~~~~~~~~~~~~~~~V~sl~fspdg~-~LaSg-s~Dg~I~IWdl~t~~ 762 (969)
+|..+.....+... ...+.++..+.|.+ +|++. ..++.|.+||..+++
T Consensus 274 ~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 274 YDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 77766555544432 23466889998765 66554 457999999999953
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.013 Score=69.97 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=58.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
+++++|+|..-.|+.|-.-|.+.+|...+.+...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht---------------------------------------------- 95 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT---------------------------------------------- 95 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeee----------------------------------------------
Confidence 4569999998899999999999999987644322
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME 583 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~ 583 (969)
....|..+|..+.|++ |..++|+..-|.|.+|...
T Consensus 96 ---------------v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 ---------------VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ---------------eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 2235899999999999 9999999999999999876
No 342
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.93 E-value=0.59 Score=53.09 Aligned_cols=177 Identities=11% Similarity=0.094 Sum_probs=87.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecC-CCCEEEEEE----------------------CCCeEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPM-DDDYFISGS----------------------LDAKVR 620 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~-~~~~L~sgs----------------------~Dg~I~ 620 (969)
++.++-......|+-.|+.+.+...++. ....+-...|... ++.+++-.- -...|.
T Consensus 92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 92 DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 4555444455678888888887766663 3334434555431 333333221 124567
Q ss_pred EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCC--CceeeeeeeeecccccCCCCCeEEEE
Q 002086 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG-----SCRLYSIED--SKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg-----~I~IwDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
..|+.+++...+......+..+.|+|....+++=|..| .-+||-+.. ........ ......+..=-
T Consensus 172 ~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-------~~~~e~~gHEf 244 (386)
T PF14583_consen 172 TIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-------RMEGESVGHEF 244 (386)
T ss_dssp EEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----------TTEEEEEEE
T ss_pred EEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-------CCCCccccccc
Confidence 77889999888888889999999999877777655544 235665543 33222110 11233344455
Q ss_pred EcCCCCceEEEEeC----CCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 694 FSPSNPSEVLVTSA----DSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 694 fspd~~~~l~sgs~----Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
|.|+|..++..+.. +..|.-+|..+........ .. ....+--++||++++-=+.|
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-E--SEEEEEE-TTSSEEEEEE--
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-CC-ceeeeEEcCCCCEEEecCCC
Confidence 88888655554432 2335556655443322111 11 23455667899988765554
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.92 E-value=0.21 Score=59.79 Aligned_cols=177 Identities=12% Similarity=0.161 Sum_probs=99.9
Q ss_pred CCCcEEEEECCCCcEEEEeecCC---------------------Ce-EEEEEecCCCCEEEEEECCC-------------
Q 002086 573 MDKTVRLWDMETKSCLKLFAHND---------------------YV-TCIQFNPMDDDYFISGSLDA------------- 617 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~---------------------~V-~sv~fsp~~~~~L~sgs~Dg------------- 617 (969)
.++.|..+|..+|+.+-.+.... .| ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 46788889999988876653211 01 1234444 456777777665
Q ss_pred -----eEEEEeCCCceEEEEecCC-CCE------EEEEEc----cCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 618 -----KVRIWSISDRLVVDWTDLH-EMV------TAACYT----PDGQ---NALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 618 -----~I~IWDl~~~~~~~~~~~~-~~V------~sv~fs----pdg~---~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
.|.-+|+.+++++-..... ... ....+. -++. .+++++.+|.+..+|..+++..-......
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 7999999999877554321 100 011111 1333 57788899999999999998765433210
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEE------------------eCCCcEEEEeCCcceEEEEeecCC--------CCe
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVT------------------SADSRIRILDGLDIVHKFRGFRNT--------SSQ 732 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sg------------------s~Dg~I~IwD~~~~~~~~~~~~~~--------~~V 732 (969)
..+...| + .++++ ..+|.|.-.|..+.....+..... ...
T Consensus 332 -----------~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 332 -----------QPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred -----------cccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 0112222 1 12211 234556666655444333322110 111
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
..-.....+.+|+.++.||.|+.+|.++++.+
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 11111225678999999999999999995443
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.27 Score=56.81 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=136.9
Q ss_pred EEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEEC---CCeEEEEeCCCceEEEE
Q 002086 558 LDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSL---DAKVRIWSISDRLVVDW 632 (969)
Q Consensus 558 ~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~---Dg~I~IWDl~~~~~~~~ 632 (969)
..+..++ +. .+++...+..|.+.|..+...+....-......+++++ ++..+..+.. ++++.+.|..++.+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3456665 44 56666667999999999888888876666888999999 7766665544 68899999998887776
Q ss_pred ecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC--C
Q 002086 633 TDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD--S 709 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D--g 709 (969)
.........+++.|+|+.+++.. .++.|.+.|........ .. ..........-..+.+.|++...+++...+ +
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 44443348999999999776655 78899999977765542 11 000122334456788999985455554444 6
Q ss_pred cEEEEeCCcceEEEEeecCCC-CeEEEEEeCCCCEEEEEeCC-CcEEEEEcCCC
Q 002086 710 RIRILDGLDIVHKFRGFRNTS-SQISAAFNADGKYIISASED-SQVYVWKREEH 761 (969)
Q Consensus 710 ~I~IwD~~~~~~~~~~~~~~~-~V~sl~fspdg~~LaSgs~D-g~I~IWdl~t~ 761 (969)
.+...|............-.. ....+.++|+|.++...... +.+.+-|..+.
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 888888665433332111111 34568899999999888554 78888888774
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.78 E-value=0.046 Score=50.88 Aligned_cols=102 Identities=18% Similarity=0.265 Sum_probs=71.8
Q ss_pred eEEEEEecCCC---CEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 597 VTCIQFNPMDD---DYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 597 V~sv~fsp~~~---~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
|++|++...++ +.|++|+.|..|++|+-. .++........|++++-... ..|+.+..+|+|-+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW--- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW--- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee---
Confidence 66777765433 689999999999999854 56666666777888888776 6799999999999998643221
Q ss_pred eeeeecccccCCCCCeEEEEEc---CCCCceEEEEeCCCcEE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFS---PSNPSEVLVTSADSRIR 712 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fs---pd~~~~l~sgs~Dg~I~ 712 (969)
. ......++++++. .++-..|++|-.+|.|-
T Consensus 76 -----R---iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 -----R---IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----e---eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1 1122335555544 34555789998888774
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.76 E-value=0.011 Score=69.73 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=101.4
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV-- 629 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-- 629 (969)
..|.--++.. +++++.|+.-|.|++|+-..++....- +-.+.+..+..++ +..+++.|+..|.|.++-+..+..
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCc
Confidence 3344334443 799999999999999999988876554 2445555666777 778888999999999998876432
Q ss_pred ---EE--EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 630 ---VD--WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 630 ---~~--~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
+. -..|...|++++|++++..+++|...|.|..-.+........ ...........|..+.+.. .+|++
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~----~~q~il~~ds~IVQlD~~q---~~LLV 185 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLS----KSQEILSEDSEIVQLDYLQ---SYLLV 185 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcc----ccceeeccCcceEEeeccc---ceehH
Confidence 11 122567899999999999999999999999988876211100 0111133456677777664 34555
Q ss_pred EeCCCcE
Q 002086 705 TSADSRI 711 (969)
Q Consensus 705 gs~Dg~I 711 (969)
++.-..|
T Consensus 186 Stl~r~~ 192 (726)
T KOG3621|consen 186 STLTRCI 192 (726)
T ss_pred hhhhhhh
Confidence 4444443
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.73 E-value=0.27 Score=52.02 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=83.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCE-EEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMV-TAAC 643 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V-~sv~ 643 (969)
..+++.|+..+.+.--|..+|+.+...--...|.+-+.- -+++++.|...|.+++.+.++|.....+...+.| ....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 478888999999999999999988766555666665555 4788999999999999999999655444333333 3445
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 644 YTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 644 fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
..+++..+.+|+.|++.+..|.++...+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEE
Confidence 67789999999999999999998877654
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.70 E-value=0.054 Score=66.92 Aligned_cols=133 Identities=19% Similarity=0.208 Sum_probs=90.5
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCC--eEEEEEe----cCCCCEEEEEECCCeEEEEeCCCc--eEEE----EecCCCCE
Q 002086 572 SMDKTVRLWDMETKSCLKLFAHNDY--VTCIQFN----PMDDDYFISGSLDAKVRIWSISDR--LVVD----WTDLHEMV 639 (969)
Q Consensus 572 s~DgtV~IWDl~t~~~i~~~~h~~~--V~sv~fs----p~~~~~L~sgs~Dg~I~IWDl~~~--~~~~----~~~~~~~V 639 (969)
.....|+-.|+..|+.+..+..... |..++-. ..+....+.|-.+..|..||.+-. +++. .+......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 3567899999999999998854333 4444322 123456677888889999999863 3432 22233557
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 640 TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 640 ~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.|++-..+| +||+|+.+|.||+||--..+ -.....+-..+|.+|..+.|| .+|++++ +..|.|++
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~--------AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKR--------AKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLID 645 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchh--------hhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEE
Confidence 888888776 89999999999999943211 222335668999999999998 5555554 44555555
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.70 E-value=0.089 Score=48.99 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=72.3
Q ss_pred EEEEEecC-----CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE
Q 002086 557 VLDLSWSR-----SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 557 I~~l~fs~-----~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
|+++++.. .+.|++|+.|..|++|+-. +.+..+...+.|++++-.. ...|+.+..+|+|-+|+-... +-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence 56677654 3789999999999999865 6777788889999998875 588999999999999986332 222
Q ss_pred EecCCCCEEEEEEcc-CC---CEEEEEeCCCcEE
Q 002086 632 WTDLHEMVTAACYTP-DG---QNALIGSHKGSCR 661 (969)
Q Consensus 632 ~~~~~~~V~sv~fsp-dg---~~Lasgs~dg~I~ 661 (969)
. .....+.++++.. ++ ..|++|-.+|.|-
T Consensus 77 i-KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 I-KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 2333466665543 32 3688888888764
No 350
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.62 E-value=0.98 Score=48.85 Aligned_cols=199 Identities=12% Similarity=0.082 Sum_probs=121.3
Q ss_pred eeeeEeccccc--CEEEEEEeCCCCEEEEEeCCC--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 442 HLCQEIQAHEG--SIWTIKFSLDARFLASAGEDR--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 442 ~l~~~L~gH~~--~I~~l~fSpDg~~LaTgs~Dg--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
+.++++. |.. -..++.|..+|.++-+.|.-| .|+.+|+.+|+.+........
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~----------------------- 89 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR----------------------- 89 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------------
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-----------------------
Confidence 3444544 433 356788878899888888766 799999999987764321100
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCe
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V 597 (969)
.|. + -+.-+.+.|+.+.| .++...+||..+.+.+..+...+.=
T Consensus 90 ---------------------~Fg---E---Git~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EG 132 (264)
T PF05096_consen 90 ---------------------YFG---E---GITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEG 132 (264)
T ss_dssp -----------------------E---E---EEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS-
T ss_pred ---------------------ccc---e---eEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcc
Confidence 000 0 11123445566666 4578899999999999999888888
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec---CC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---LH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+.++. ++..|+.......|+++|..+-+...... .. ..++.+.|. +|...|=.=....|...|..+++..
T Consensus 133 WGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 133 WGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp -EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE
T ss_pred eEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE
Confidence 88885 56677776667889999988765443222 22 346667776 5655555556778888899998876
Q ss_pred eeeeeeeccc-------ccCCCCCeEEEEEcCCCCceEEEE
Q 002086 672 QLNQVDFQTK-------KKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 672 ~~~~~~~~~~-------~~~h~~~It~l~fspd~~~~l~sg 705 (969)
....+.-... ......-.+.|++.|..+.++++|
T Consensus 209 ~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 209 GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5443321111 111245688999999886666666
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.056 Score=62.07 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=101.3
Q ss_pred EEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 609 YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQ-------NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~-------~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+|.++.....|+-.|+..|+++........|+-+.+.|+.+ .-++|-.+..|.-||.+-....... + .+.+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~-~-~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA-V-VQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee-e-eecc
Confidence 34456666779999999999998777777788889988753 2456778999999999843321100 0 1112
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.........|++-..+| ++++|+.+|.|++||......+........+|..+..+.||++|++.+ +.++.+-++.
T Consensus 426 qy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 23334556677766665 999999999999999533333333344566799999999999988776 5566666654
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.57 E-value=0.68 Score=55.47 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=93.4
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCC------eE-EEEEecCCCCEEEEEE---------CCCeEEEEeCCCceE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDY------VT-CIQFNPMDDDYFISGS---------LDAKVRIWSISDRLV 629 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~------V~-sv~fsp~~~~~L~sgs---------~Dg~I~IWDl~~~~~ 629 (969)
..++.++.++.|.-+|.++|+.+-.+.-... +. +..+. +..++.++ .+|.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 7888889999999999999999877743332 11 12222 24555554 468899999999987
Q ss_pred EEEecCC-C--------------------CE-EEEEEccCCCEEEEEeCCC------------------cEEEEEcCCCc
Q 002086 630 VDWTDLH-E--------------------MV-TAACYTPDGQNALIGSHKG------------------SCRLYSIEDSK 669 (969)
Q Consensus 630 ~~~~~~~-~--------------------~V-~sv~fspdg~~Lasgs~dg------------------~I~IwDl~~~~ 669 (969)
+-..... . .+ ...++.+.+..+++++.++ .|.-+|..+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 6543321 0 01 1345555667888887665 68889999998
Q ss_pred eeeeeeeeeccc--ccCCCCCe-EEEEEcCCCC--ceEEEEeCCCcEEEEeCCcceEEEE
Q 002086 670 LHQLNQVDFQTK--KKSSTRKI-TGFQFSPSNP--SEVLVTSADSRIRILDGLDIVHKFR 724 (969)
Q Consensus 670 ~~~~~~~~~~~~--~~~h~~~I-t~l~fspd~~--~~l~sgs~Dg~I~IwD~~~~~~~~~ 724 (969)
..-..+...... ......++ ..+. .-++. ..+++++.+|.++.+|..+......
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 765443211000 00011111 1111 01121 2577888899999999777665554
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.032 Score=66.06 Aligned_cols=114 Identities=10% Similarity=0.189 Sum_probs=89.3
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
+++. .+.+++.|+.-|.|++|+-..++...... ....+..++++++..++|+|+..|.|.++-+.......... +
T Consensus 40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~--~ 116 (726)
T KOG3621|consen 40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY--V 116 (726)
T ss_pred Eeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee--e
Confidence 4444 78999999999999999998887766555 55667788899999999999999999999988744332222 2
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
....+.|...|++++|++++ ..+++|...|.|.+-.+..
T Consensus 117 t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 22234588999999999998 8999999999988776443
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.49 E-value=0.22 Score=56.96 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=86.6
Q ss_pred cEEEEECCCCcEEEEe------ecCCCeEEEEEecCCCCEEEEE--ECCC---eEEEEeCCCceEE--EEecCCCC---E
Q 002086 576 TVRLWDMETKSCLKLF------AHNDYVTCIQFNPMDDDYFISG--SLDA---KVRIWSISDRLVV--DWTDLHEM---V 639 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~------~h~~~V~sv~fsp~~~~~L~sg--s~Dg---~I~IWDl~~~~~~--~~~~~~~~---V 639 (969)
.+.|+|+.+++....- .-...+..+.|.+ ++..|+.. ..+. .+.++|..++... ........ .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 3667888888753322 2456789999998 66634433 3332 3677788765432 22222222 2
Q ss_pred EEEEEc-cCCCEEE-EEeCCCc--EEEEEcCCCceeeeeeeeecccccCCCCCeEE-EEEcCCCCceEEEEeCCC----c
Q 002086 640 TAACYT-PDGQNAL-IGSHKGS--CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG-FQFSPSNPSEVLVTSADS----R 710 (969)
Q Consensus 640 ~sv~fs-pdg~~La-sgs~dg~--I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~-l~fspd~~~~l~sgs~Dg----~ 710 (969)
....|. +++..++ ....+|. |.+++...+..... ....-.|.. +.+++++...++++..+. .
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l---------T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL---------TSGDWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES---------S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc---------ccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 345554 6665544 4556774 55556655543211 223444544 678888766677776533 4
Q ss_pred EEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 711 IRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 711 I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
|+.-++. .... ............+.|||+|++++-..
T Consensus 309 lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 309 LYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEE
Confidence 5555555 2222 11111122125899999999987544
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.46 E-value=1.5 Score=47.39 Aligned_cols=205 Identities=11% Similarity=0.181 Sum_probs=107.2
Q ss_pred eEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.|.+-...|.+|.|.|+.. ++++....+.|...+. +|+++..+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~--------------------------------- 60 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP--------------------------------- 60 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE---------------------------------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe---------------------------------
Confidence 45667777899999999755 6666667787777775 466665322
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC--c--E--EEEe-----
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK--S--C--LKLF----- 591 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~--~--~--i~~~----- 591 (969)
+.+ .+..-+|++.. +.++++.-.++.+.++++... . . ...+
T Consensus 61 --------------------------l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (248)
T PF06977_consen 61 --------------------------LDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP 113 (248)
T ss_dssp ---------------------------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S
T ss_pred --------------------------CCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc
Confidence 222 24567788877 444554446899999988331 1 1 1112
Q ss_pred -ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC---c-eE--EEEe------cCCCCEEEEEEccCCC-EEEEEeCC
Q 002086 592 -AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD---R-LV--VDWT------DLHEMVTAACYTPDGQ-NALIGSHK 657 (969)
Q Consensus 592 -~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~---~-~~--~~~~------~~~~~V~sv~fspdg~-~Lasgs~d 657 (969)
.++..+-.|+|++ .++.|+.+-...-..||.+.. . .. .... .....+..++++|... +++.....
T Consensus 114 ~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es 192 (248)
T PF06977_consen 114 NKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES 192 (248)
T ss_dssp ---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT
T ss_pred cCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC
Confidence 2556799999999 666666666666666666643 1 11 1111 1224578999999754 55566677
Q ss_pred CcEEEEEcCCCceeeeeeeeec-ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQ-TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~-~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
..|.++| ..++......+.-. ..........-+|+|.++| .|.+.+.-+..++|
T Consensus 193 ~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 193 RLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF 247 (248)
T ss_dssp TEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred CeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence 8888899 45555443332110 0011223457789999987 45555565555544
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.45 E-value=0.12 Score=61.80 Aligned_cols=150 Identities=9% Similarity=-0.003 Sum_probs=94.8
Q ss_pred CcEEEEEeCCCcEEEEEC---CCCcEEEEeecCCCeEEEEEecC-------CCCEEEEEECCCeEEEEeCCC-----ceE
Q 002086 565 SHLLLSSSMDKTVRLWDM---ETKSCLKLFAHNDYVTCIQFNPM-------DDDYFISGSLDAKVRIWSISD-----RLV 629 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl---~t~~~i~~~~h~~~V~sv~fsp~-------~~~~L~sgs~Dg~I~IWDl~~-----~~~ 629 (969)
.-.++..+.||....... +.+..+..+.-...=..+.|+.. ++++... .++.|.+.|..+ ..+
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v 313 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSAL 313 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcce
Confidence 334555666766555443 44554444422222245555441 4555444 367899999998 467
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeee----cccccCCCCCeEEEEEcCCCCceEEE
Q 002086 630 VDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDF----QTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 630 ~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~----~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
+...........+.++|||+++++++ .+.+|.|+|+...+......+.+ ... ..-...-...+|.++| ..+.+
T Consensus 314 ~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae-vevGlGPLHTaFDg~G-~ayts 391 (635)
T PRK02888 314 TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE-PELGLGPLHTAFDGRG-NAYTT 391 (635)
T ss_pred EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe-eccCCCcceEEECCCC-CEEEe
Confidence 77777888899999999999988755 58999999998755311000000 000 1113344567788887 67777
Q ss_pred EeCCCcEEEEeCCc
Q 002086 705 TSADSRIRILDGLD 718 (969)
Q Consensus 705 gs~Dg~I~IwD~~~ 718 (969)
-..|..|..|++..
T Consensus 392 lf~dsqv~kwn~~~ 405 (635)
T PRK02888 392 LFLDSQIVKWNIEA 405 (635)
T ss_pred EeecceeEEEehHH
Confidence 78999999999654
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.45 E-value=0.53 Score=54.96 Aligned_cols=173 Identities=13% Similarity=0.150 Sum_probs=91.6
Q ss_pred cEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC---CCC-----EEEEEEc
Q 002086 576 TVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL---HEM-----VTAACYT 645 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~---~~~-----V~sv~fs 645 (969)
.|.||+..... +..+ .+ +.|.++.|.. ...|++...||.+++||+.... ....+. ... +....+.
T Consensus 62 ~I~iys~sG~l-l~~i~w~~-~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKL-LSSIPWDS-GRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCE-eEEEEECC-CCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 48888876544 4433 34 8999999985 5677788899999999997554 111111 111 2222333
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcee-ee-eeeee-cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 646 PDGQNALIGSHKGSCRLYSIEDSKLH-QL-NQVDF-QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 646 pdg~~Lasgs~dg~I~IwDl~~~~~~-~~-~~~~~-~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
.+| +++-..++.+.+..--..... .. ..... ...............++.+. ...+....++.+.+.+......
T Consensus 137 ~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 137 KNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc-
Confidence 345 333334555444432221110 00 00000 00000011100012344433 3444445556666444322211
Q ss_pred EEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 723 FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
....+++..+++||+|++||.-..+|.+.|...+-
T Consensus 213 ---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 213 ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred ---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 12345799999999999999999999999987653
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.39 E-value=2.9 Score=48.73 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=98.6
Q ss_pred EEecC-CcEEEEEeCC-----------CcEEEEECCCCcE--EEEee--cCCC-eEEEEEecCCCCEEEEEEC-C---Ce
Q 002086 560 LSWSR-SHLLLSSSMD-----------KTVRLWDMETKSC--LKLFA--HNDY-VTCIQFNPMDDDYFISGSL-D---AK 618 (969)
Q Consensus 560 l~fs~-~~~L~Sgs~D-----------gtV~IWDl~t~~~--i~~~~--h~~~-V~sv~fsp~~~~~L~sgs~-D---g~ 618 (969)
+.|.+ ++.|+....+ ..|+.|.+.+... ..++. .... ...+..++ ++.+|+.... . ..
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCe
Confidence 78887 4555444432 3488889887653 34442 2233 66788888 8887665332 2 34
Q ss_pred EEEEeCCCc-----eEEEEecCCCCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeeeeecccccCCCC--C
Q 002086 619 VRIWSISDR-----LVVDWTDLHEMVTAACYTPDGQNALIGS---HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR--K 688 (969)
Q Consensus 619 I~IWDl~~~-----~~~~~~~~~~~V~sv~fspdg~~Lasgs---~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~--~ 688 (969)
|.+.|+..+ ....+......+....-+..+.+++... ..+.|...++........... ...+.. .
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~-----l~~~~~~~~ 328 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV-----LIPEDEDVS 328 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE-----EE--SSSEE
T ss_pred EEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeE-----EcCCCCcee
Confidence 888888774 4444444444444333333443443332 345677777776653111100 022233 3
Q ss_pred eEEEEEcCCCCceEEEEeCCC--cEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEE-EEeC---CCcEEEEEcCCC
Q 002086 689 ITGFQFSPSNPSEVLVTSADS--RIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYII-SASE---DSQVYVWKREEH 761 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg--~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~La-Sgs~---Dg~I~IWdl~t~ 761 (969)
+..+... +..+++....++ .|++++.. ............+.|..+...+++..|. +-+. -++|+.||+.++
T Consensus 329 l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 329 LEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 5555544 324555555555 48888977 4333332233344455555555554433 3322 357888999884
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.023 Score=66.43 Aligned_cols=91 Identities=11% Similarity=0.208 Sum_probs=76.9
Q ss_pred CCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeE-EEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 554 LDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVT-CIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 554 ~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~-sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
...|.-+.|+| -.++|++..+|.|.+..+. .+.+.++. +...++ +++|.| +|+.|++|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 35678899999 7899999999999999998 66777775 777777 999999 9999999999999999999998777
Q ss_pred EE--ecCCCCEEEEEEcc
Q 002086 631 DW--TDLHEMVTAACYTP 646 (969)
Q Consensus 631 ~~--~~~~~~V~sv~fsp 646 (969)
.. ......|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 65 44456778887763
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=2.2 Score=49.29 Aligned_cols=155 Identities=14% Similarity=0.198 Sum_probs=106.5
Q ss_pred EEEEEecC-CcEEEEEeC---CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeCCCceEEE
Q 002086 557 VLDLSWSR-SHLLLSSSM---DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSISDRLVVD 631 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~---DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl~~~~~~~ 631 (969)
-..+++++ ++.+..+.. +++|.+.|..+++.+....-...-..+++.| ++..++.+. .++.|.+.|.....+..
T Consensus 118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec
Confidence 34677887 555555544 7999999999999888764333238999999 888655554 78999999988776664
Q ss_pred -----EecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 632 -----WTDLHEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 632 -----~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
..........+.+.|+|.++.+.... +.+...|..++........ .... ....+.+.|++....+
T Consensus 197 ~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~~~~v~~~p~g~~~yv 269 (381)
T COG3391 197 GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-APRGVAVDPAGKAAYV 269 (381)
T ss_pred cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-CCCceeECCCCCEEEE
Confidence 23333456789999999977665443 5899999988776433110 1222 4567889999844444
Q ss_pred EEeCCCcEEEEeCCcc
Q 002086 704 VTSADSRIRILDGLDI 719 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~ 719 (969)
.-+..+.+.+.|....
T Consensus 270 ~~~~~~~V~vid~~~~ 285 (381)
T COG3391 270 ANSQGGTVSVIDGATD 285 (381)
T ss_pred EecCCCeEEEEeCCCC
Confidence 4456688888886553
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.98 E-value=1.7 Score=48.67 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=94.5
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe------ecCCCeEEEEEecCCCCEEEEEEC-----------CCeEEEEeCCCc
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF------AHNDYVTCIQFNPMDDDYFISGSL-----------DAKVRIWSISDR 627 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~------~h~~~V~sv~fsp~~~~~L~sgs~-----------Dg~I~IWDl~~~ 627 (969)
+..|+++.. -+.+++.+++..+..+ .-....+.+.+.| ++.+.++... -|.|+.+|. .+
T Consensus 77 ~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g 152 (307)
T COG3386 77 GGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG 152 (307)
T ss_pred CCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CC
Confidence 455555443 3566777666663333 1224556778888 6766655433 144555555 34
Q ss_pred eEEEEe-cCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 628 LVVDWT-DLHEMVTAACYTPDGQNALIGSH-KGSCRLYSIED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 628 ~~~~~~-~~~~~V~sv~fspdg~~Lasgs~-dg~I~IwDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
...... .+-...+.|+|+||++.|..+.. .+.|.-|++.. +....... ........+..-.++...++ .+.+
T Consensus 153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~---~~~~~~~~G~PDG~~vDadG-~lw~ 228 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG---FVDFDEEPGLPDGMAVDADG-NLWV 228 (307)
T ss_pred CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce---EEEccCCCCCCCceEEeCCC-CEEE
Confidence 444433 33556688999999988777654 47888888763 11111100 00112234455566666666 4443
Q ss_pred EEeCCC-cEEEEeCC-cceEEEEeecCCCCeEEEEEe-CCCCEEEEEe
Q 002086 704 VTSADS-RIRILDGL-DIVHKFRGFRNTSSQISAAFN-ADGKYIISAS 748 (969)
Q Consensus 704 sgs~Dg-~I~IwD~~-~~~~~~~~~~~~~~V~sl~fs-pdg~~LaSgs 748 (969)
++..+| .|.+|+.. +....+... ...+++++|- ++.+.|+..+
T Consensus 229 ~a~~~g~~v~~~~pdG~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 229 AAVWGGGRVVRFNPDGKLLGEIKLP--VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ecccCCceEEEECCCCcEEEEEECC--CCCCccceEeCCCcCEEEEEe
Confidence 444443 88888866 223333322 2556777774 4455554444
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.94 E-value=0.015 Score=40.94 Aligned_cols=36 Identities=33% Similarity=0.561 Sum_probs=31.8
Q ss_pred ceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEE
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWD 581 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWD 581 (969)
+...+..|...|.++.|.+ +.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456778999999999998 78999999999999996
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.92 E-value=0.22 Score=58.15 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=93.5
Q ss_pred CCCeEEEEEecCCCCEEEEE---ECC-CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEE-eCCC--cEEEEEcC
Q 002086 594 NDYVTCIQFNPMDDDYFISG---SLD-AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG-SHKG--SCRLYSIE 666 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sg---s~D-g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg--~I~IwDl~ 666 (969)
...+..-+|+| ++..++-. ... ..+.++|+.+++..........-..-.|+|||+.|+.. ..|| .|+++|+.
T Consensus 192 ~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 34455567777 55543322 122 45999999998766666666666778999999988764 4556 56677777
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc--EEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCE
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR--IRILDGLDI-VHKFRGFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~ 743 (969)
....... ....+.-+.=.|+|+|...+++.+..|. |++++.... ...+....... ..-.|+|||++
T Consensus 271 ~~~~~~L---------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~SpdG~~ 339 (425)
T COG0823 271 GKNLPRL---------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPDGDK 339 (425)
T ss_pred CCcceec---------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCCCCE
Confidence 7663321 1112222255699999777777777776 444453322 12222221111 15678999999
Q ss_pred EEEEeCC-Cc--EEEEEcCC
Q 002086 744 IISASED-SQ--VYVWKREE 760 (969)
Q Consensus 744 LaSgs~D-g~--I~IWdl~t 760 (969)
|+..+.. |. |.+.++.+
T Consensus 340 i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred EEEEeccCCceeeEEeccCC
Confidence 9877753 44 55555544
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.037 Score=64.81 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=75.2
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE-EEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT-AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~-sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
...|.-+.|+| .-.+||.+..+|.|.+..+.-.++..+.-+...++ +++|.|||+.|++|-.||+|++.|+..+....
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 44577889999 88999999999999999988666665554666676 99999999999999999999999999887654
Q ss_pred eeeeeecccccCCCCCeEEEEEcC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
... ......|.++-|.+
T Consensus 99 ~~~-------~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFL-------FSVETDISKGIWDR 115 (665)
T ss_pred ccc-------cccccchheeeccc
Confidence 421 22345667777764
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.41 E-value=7.7 Score=46.93 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=36.9
Q ss_pred eEEEEeCCCceEEEEecC---C-------CCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCCcee
Q 002086 618 KVRIWSISDRLVVDWTDL---H-------EMVTAACYTPDGQ---NALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~---~-------~~V~sv~fspdg~---~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
.|.-.|++++++.-.+.. . ....-+.+..+|+ .++.+..+|.+++.|-.+++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 577778888887643321 1 1122233335676 6778999999999999999875
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.38 E-value=3 Score=48.78 Aligned_cols=188 Identities=13% Similarity=0.154 Sum_probs=100.3
Q ss_pred ceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee---cCCCe-----EEEEEecCCCC
Q 002086 537 ETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA---HNDYV-----TCIQFNPMDDD 608 (969)
Q Consensus 537 ~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~---h~~~V-----~sv~fsp~~~~ 608 (969)
..+|...++++..+.-..+.|.++.|..+..|+.-..||.++++|+.... ...++ ....| ..+.+.. +|
T Consensus 63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~G- 139 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NG- 139 (410)
T ss_pred EEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CC-
Confidence 35666777777765544589999999998888899999999999997333 11111 11122 1222221 23
Q ss_pred EEEEEECCCeEEEEeCCCce-EEE-EecCCC---------CEEE-EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 002086 609 YFISGSLDAKVRIWSISDRL-VVD-WTDLHE---------MVTA-ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~-~~~-~~~~~~---------~V~s-v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
++.-..++.+.+..--... ... ...... .... ..++.+....+....++.+.+.+-...+.
T Consensus 140 -ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------ 212 (410)
T PF04841_consen 140 -IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------ 212 (410)
T ss_pred -EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------
Confidence 2222334444444322221 111 001000 0111 23444444444444555555443322110
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--cceEEEEeecCCCCeEEEEEeCCCC
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNTSSQISAAFNADGK 742 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--~~~~~~~~~~~~~~V~sl~fspdg~ 742 (969)
....+++..+++||++ ++++.-..+|.+.+.... +....+... .......+.|+-+..
T Consensus 213 ------i~~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 ------IDSDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDA 272 (410)
T ss_pred ------ccCCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCc
Confidence 1234689999999998 788888899999888732 222222222 123445667765543
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.34 E-value=6 Score=49.36 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=97.8
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+.......+..+...++.|+-... ..|++++-. +....|.. ...++....+.+...+++++.++.+...++....+.
T Consensus 446 gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~ 522 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLR 522 (1096)
T ss_pred cccccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeecccee
Confidence 444555555555555666555443 358887765 33333333 344555555556667888887888888888776643
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCC--CCc---eEEEEeCCCcEEEEeCC-cceE----EEEeecCCCCeEEEEEeCCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPS--NPS---EVLVTSADSRIRILDGL-DIVH----KFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd--~~~---~l~sgs~Dg~I~IwD~~-~~~~----~~~~~~~~~~V~sl~fspdg 741 (969)
...+ ......|.|+.++|- ++. ++++|..+..+.+.-.. +... .+.+..-+..|.-..|-.|.
T Consensus 523 e~~~-------~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 523 EVSH-------KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred eeee-------heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence 3221 345678999999975 444 78888777765554322 1111 11222234456666777788
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 002086 742 KYIISASEDSQVYVWKREE 760 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t 760 (969)
.||.++..||.++-|-++.
T Consensus 596 ~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred eEEEEEcCCceEEEEEEEc
Confidence 9999999999988776654
No 368
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.05 E-value=5 Score=46.73 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=105.2
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-------------------
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD------------------- 626 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~------------------- 626 (969)
.+|+.-+.||.+.+++-+.-.....+...--...+.|.+ ..+.|++++.+..|..|....
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 688899999999999988766555554444445568888 788899999888998887521
Q ss_pred -ceEE---EEecCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEE--EEcCC
Q 002086 627 -RLVV---DWTDLHEMVTAACYTP---DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF--QFSPS 697 (969)
Q Consensus 627 -~~~~---~~~~~~~~V~sv~fsp---dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l--~fspd 697 (969)
++.+ ..+...+.+..+.... ....+++-+ ..++.+.+-. +.+.....+++. ...-.++.+ ...+.
T Consensus 225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krLd~~----p~~~~~Y~~~~~~~~~ 298 (418)
T PF14727_consen 225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRLDYN----PSCFCPYRVPWYNEPS 298 (418)
T ss_pred ccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEecCCc----eeeEEEEEeecccCCC
Confidence 0100 1122233344443332 222333333 3445555543 333322222110 000001111 11122
Q ss_pred CCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 698 NPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
....+++++.++++.||...+..-..........+.-..|..-...|++-+.+|.|.+-=+-+
T Consensus 299 ~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 299 TRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 223599999999999998665544433332333333334444456888888999998877765
No 369
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.99 E-value=8.7 Score=43.94 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=85.2
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEEC---CCe-EEEEeCC--CceEEEEecC--CCCEEEEEEcc
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSL---DAK-VRIWSIS--DRLVVDWTDL--HEMVTAACYTP 646 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~---Dg~-I~IWDl~--~~~~~~~~~~--~~~V~sv~fsp 646 (969)
..|.--|+.+|+...++.-...+.-+.|+|.+..+|+-|-+ +.. -+||-++ .........+ ...+..=-|.|
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence 45667789999988888889999999999977777777643 221 2556553 3333333222 24456667889
Q ss_pred CCCEEEEEe-----CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE-eCCC-----------
Q 002086 647 DGQNALIGS-----HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT-SADS----------- 709 (969)
Q Consensus 647 dg~~Lasgs-----~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg-s~Dg----------- 709 (969)
||..|.--+ .+..|.-+|+.+++....... .....+..++++ .|++| +.|.
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----------p~~~H~~ss~Dg--~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----------PWCSHFMSSPDG--KLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----------SEEEEEE-TTS--SEEEEEE--------------
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC----------CceeeeEEcCCC--CEEEecCCCCCccccccccce
Confidence 998766422 233566677777654322211 124455566776 34444 3332
Q ss_pred -----cEEEEeCCcceE-EEEeec-------C--CCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcC
Q 002086 710 -----RIRILDGLDIVH-KFRGFR-------N--TSSQISAAFNADGKYII-SASEDSQVYVWKRE 759 (969)
Q Consensus 710 -----~I~IwD~~~~~~-~~~~~~-------~--~~~V~sl~fspdg~~La-Sgs~Dg~I~IWdl~ 759 (969)
-|++++...... .+..|. + ...=-...|+|||++|+ ++...|...||=++
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 355666543222 121111 0 01123579999998866 55567877777554
No 370
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.97 E-value=2.2 Score=52.09 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=104.2
Q ss_pred EEEEecCCcEEEEEeCC------CcEEEEECCCCcEEEEeecC--CCeEEEEEecCCCCEEEEEECCCe-----EEEEeC
Q 002086 558 LDLSWSRSHLLLSSSMD------KTVRLWDMETKSCLKLFAHN--DYVTCIQFNPMDDDYFISGSLDAK-----VRIWSI 624 (969)
Q Consensus 558 ~~l~fs~~~~L~Sgs~D------gtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp~~~~~L~sgs~Dg~-----I~IWDl 624 (969)
.+++...+...++|+.| .++..||..+.+-...-.-. ..-.+++.. ++...++|+.||. |-.||.
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence 45666667888999988 46788888887744422211 111222222 6888899999865 777887
Q ss_pred CCceEEEEecCCCCEEEE-EEccCCCEEEEEeCCC------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 625 SDRLVVDWTDLHEMVTAA-CYTPDGQNALIGSHKG------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 625 ~~~~~~~~~~~~~~V~sv-~fspdg~~Lasgs~dg------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
.+.+-...-......... ...-+|...++|+.++ .+..||..++.......+.. .... ..++.-
T Consensus 404 ~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~-----~g~a~~-- 474 (571)
T KOG4441|consen 404 VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSG-----FGVAVL-- 474 (571)
T ss_pred CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc--cccc-----ceEEEE--
Confidence 776533222222222222 2223677778887554 57789988887654433211 1111 113332
Q ss_pred CCceEEEEeCCCc-----EEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEEcCC
Q 002086 698 NPSEVLVTSADSR-----IRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQ-----VYVWKREE 760 (969)
Q Consensus 698 ~~~~l~sgs~Dg~-----I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~-----I~IWdl~t 760 (969)
+...+++|+.|+. |..||.....-.... ......-..++ .-+++..+.|+.||. |..||-.+
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCC
Confidence 2268888887763 666775432222211 11111111121 236777888888764 66666555
No 371
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=3.5 Score=44.95 Aligned_cols=167 Identities=10% Similarity=0.206 Sum_probs=112.8
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
.|-...|.++.|+| .+.|++......-.||=..+|+.+.++. .-...-.|.+.. ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 34455699999999 6778888888888888888899998873 234456677775 5666666667888888877554
Q ss_pred e-EE---------EEecC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee--cccccCCCCCeEEEEE
Q 002086 628 L-VV---------DWTDL-HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF--QTKKKSSTRKITGFQF 694 (969)
Q Consensus 628 ~-~~---------~~~~~-~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~--~~~~~~h~~~It~l~f 694 (969)
. ++ ....+ +...-.++|.|....|+++=+..-+.||.+............. .....-.-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2 11 11122 4557789999999999999999888888776433111100000 0000122356788999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCc
Q 002086 695 SPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
++..+.+++.+.+++.+.-.|...
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC
Confidence 987777888888888888887543
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.46 E-value=0.063 Score=55.88 Aligned_cols=143 Identities=16% Similarity=0.110 Sum_probs=72.9
Q ss_pred EEEEEECCCeEEEEeCCCceEEEEecCCCCEEE-EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 609 YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTA-ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~s-v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
.+...+.||.|+-++++..+...... ..+.+ .....-+..+++|+.+|.|++|.........- .......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse--~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d-------~~~s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSE--RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD-------RVCSGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhh--hhhhcceeecccCceEEeecccceEEEecCCccchHHH-------hhhcccc
Confidence 34555678888888876543221110 00111 11122356899999999999998762211100 0011122
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-EeecCCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEcCC
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-RGFRNTSSQISAAFNADGKYIISA--SEDSQVYVWKREE 760 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSg--s~Dg~I~IWdl~t 760 (969)
.|.+..-.-+...+..+++.|+.||.|+.......- .++....++..+..+..+++|+.+ |.|..++.|++..
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 233322222222588999999999999965433222 222221333333444444455555 5555555555543
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.31 E-value=7.5 Score=43.49 Aligned_cols=186 Identities=16% Similarity=0.111 Sum_probs=105.0
Q ss_pred EecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE-EEEecC--
Q 002086 561 SWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDL-- 635 (969)
Q Consensus 561 ~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~-- 635 (969)
.|.+ +.++.+--..+.|.-|+..+++.. .+.+...+.++.... .+..|+++. .-+.+++...+.. ..+...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 3555 234555566788888888766543 344444455555543 455555553 3366777765554 222211
Q ss_pred ---CCCEEEEEEccCCCEEEEEeC-----------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 636 ---HEMVTAACYTPDGQNALIGSH-----------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 636 ---~~~V~sv~fspdg~~Lasgs~-----------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
....+.+...|+|.+.+.... -|.++.+|. .+...... ..+...-+.|+|+|++..+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~--------~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL--------DDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee--------cCcEEecCceEECCCCCEE
Confidence 134667888999887765433 133444443 23222111 2234456789999999655
Q ss_pred EEEEeCCCcEEEEeCCc-------ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcC
Q 002086 702 VLVTSADSRIRILDGLD-------IVHKFRGFRNTSSQISAAFNADGKYIISASEDS-QVYVWKRE 759 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~-------~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg-~I~IWdl~ 759 (969)
+++=+..+.|.-|+... ....+......+..-.++...+|.+-+++-.+| .|.+|+-+
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 66657778888887431 111111112234445677778888776555554 88888877
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=2.9 Score=45.50 Aligned_cols=181 Identities=11% Similarity=0.202 Sum_probs=114.4
Q ss_pred EEEEECCCCcEEE---EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CCEEEEEEccCCCEE
Q 002086 577 VRLWDMETKSCLK---LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EMVTAACYTPDGQNA 651 (969)
Q Consensus 577 V~IWDl~t~~~i~---~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~V~sv~fspdg~~L 651 (969)
.-+|...-...+. ..+-...|.++.|+| +.+.|++......-.||=...|+++...... ...-.|.|..+|+++
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fv 143 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFV 143 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEE
Confidence 4555544333222 124556699999999 7777777777777777766777777665544 345678888888888
Q ss_pred EEEeCCCcEEEEEcCCCceee-ee--eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee--
Q 002086 652 LIGSHKGSCRLYSIEDSKLHQ-LN--QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF-- 726 (969)
Q Consensus 652 asgs~dg~I~IwDl~~~~~~~-~~--~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~-- 726 (969)
++--.+..+.++.+....... .. .+.+....+ .....-+++|.|.+ ..|+++-+-.-+.||........+..+
T Consensus 144 i~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k-~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 144 IVDERDRALYLFTVDADTTVISAKVQKIPLGTTNK-KNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred EEehhcceEEEEEEcCCccEEeccceEEeccccCC-CCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccc
Confidence 888889999998887663221 11 222222211 26678899999988 677777777766666533211111111
Q ss_pred ---cC-----CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 002086 727 ---RN-----TSSQISAAFNA-DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 727 ---~~-----~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t 760 (969)
.. -..+.++.|.+ .+.+|+-+.+++.|.-.|+..
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 00 12355677876 566777777888887777764
No 375
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.98 E-value=10 Score=47.77 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=74.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCe---------EEEEEec---------------CCCCEEEEEECCCeEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYV---------TCIQFNP---------------MDDDYFISGSLDAKVR 620 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V---------~sv~fsp---------------~~~~~L~sgs~Dg~I~ 620 (969)
++.|+.++.++.|.-.|..+|+.+-.+.....+ ..+.+.. .++..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 688888899999999999999988777433221 2233321 1345888899999999
Q ss_pred EEeCCCceEEEEecCCCCEE-------------EEEEcc--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 002086 621 IWSISDRLVVDWTDLHEMVT-------------AACYTP--DGQNALIGSH----------KGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~-------------sv~fsp--dg~~Lasgs~----------dg~I~IwDl~~~~~~~~~ 674 (969)
-.|.++++.+..+.....|. .+.-.| .+..+++|+. +|.|+-||..++++.-..
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999998886554433221 111112 2346666643 688999999999986544
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.98 E-value=2.9 Score=49.19 Aligned_cols=132 Identities=12% Similarity=0.219 Sum_probs=70.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc------------eEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR------------LVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~------------~~~~~ 632 (969)
|.+|+..+.+ .|.+||+.+++.+..+.... |..|.|++ ++.+++..+.+ .+.|++.... .....
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 5666666554 89999999999999997665 99999999 88888888755 6888876555 33334
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEE
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~ 712 (969)
......|.+.+|..+ .|+-.+.. .++. +-.+....... -..++.-+.+.+.. ..+.....|+.|.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~---------ld~~~yllgy~~~~-~~ly~~Dr~~~v~ 257 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH---------LDKPLYLLGYLPKE-NRLYLIDRDGNVI 257 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE----------SS--EEEEEETTT-TEEEEE-TT--EE
T ss_pred EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE---------cCCceEEEEEEccC-CEEEEEECCCCEE
Confidence 443667888888765 44444433 5554 33443322211 12344555555533 4555555666665
Q ss_pred EEe
Q 002086 713 ILD 715 (969)
Q Consensus 713 IwD 715 (969)
.+.
T Consensus 258 ~~~ 260 (443)
T PF04053_consen 258 SYE 260 (443)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.83 E-value=1.8 Score=52.85 Aligned_cols=161 Identities=10% Similarity=0.081 Sum_probs=85.7
Q ss_pred cCCCeEEEEEecCCCCEEEEEE------CCC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC-CcEEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGS------LDA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK-GSCRLY 663 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs------~Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d-g~I~Iw 663 (969)
....+...+++| +++.++..- .|. .|.+++... ....+... ...+.-.|+|+|..|++.... ..+++.
T Consensus 348 ~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC-CCCCCceECCCCCceEEEecCcceEEEe
Confidence 334678899999 888776655 243 466666533 22333332 237889999999888876543 223333
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE---EeCCcceEEE----Ee-ecCCCCeEEE
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI---LDGLDIVHKF----RG-FRNTSSQISA 735 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I---wD~~~~~~~~----~~-~~~~~~V~sl 735 (969)
+-..........+.-..........|..+.|+|||. .++... ++.|++ -........+ .. ......+.++
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGV-RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 222111111111110000012345799999999995 444433 467777 3322222112 11 1122235788
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 736 AFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.|..++.++ .+..++...+|.+.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEe
Confidence 999998855 55555555555543
No 378
>PHA02713 hypothetical protein; Provisional
Probab=93.82 E-value=1.4 Score=53.56 Aligned_cols=187 Identities=12% Similarity=0.094 Sum_probs=95.5
Q ss_pred cCCcEEEEEeCC------CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCC-----eEEEEeCCCceE
Q 002086 563 SRSHLLLSSSMD------KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDA-----KVRIWSISDRLV 629 (969)
Q Consensus 563 s~~~~L~Sgs~D------gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg-----~I~IWDl~~~~~ 629 (969)
..+..++.|+.+ ..+..||..+..-...- .....-.+++.. ++...+.||.++ .+..||..+..-
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 345677777753 34778888877543221 111111123332 577778888764 488899887653
Q ss_pred EEEecCCCCEE-EEEEccCCCEEEEEeCCC-----------------------cEEEEEcCCCceeeeeeeeecccccCC
Q 002086 630 VDWTDLHEMVT-AACYTPDGQNALIGSHKG-----------------------SCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 630 ~~~~~~~~~V~-sv~fspdg~~Lasgs~dg-----------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
........+.. ..+..-+|...++|+.++ .+..||..+.+......+.. .
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~------~ 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT------G 453 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc------c
Confidence 33222221111 111122677777777543 47778887776543322110 0
Q ss_pred CCCeEEEEEcCCCCceEEEEeCC------CcEEEEeCCc-ce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCC--cEEE
Q 002086 686 TRKITGFQFSPSNPSEVLVTSAD------SRIRILDGLD-IV-HKFRGFRNTSSQISAAFNADGKYIISASEDS--QVYV 755 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~D------g~I~IwD~~~-~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg--~I~I 755 (969)
... .+++.. ++ ..+++|+.+ ..+..||..+ .. ..............++ .-+|++.++|+.|| .+..
T Consensus 454 r~~-~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-~~~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 454 TIR-PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-LHDNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ccc-CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-EECCEEEEEeeecceeehhh
Confidence 111 112222 23 566777654 2367788654 21 1111111111111222 22788999999888 6778
Q ss_pred EEcCCC
Q 002086 756 WKREEH 761 (969)
Q Consensus 756 Wdl~t~ 761 (969)
||..+.
T Consensus 530 yd~~~~ 535 (557)
T PHA02713 530 FNVYTY 535 (557)
T ss_pred cCcccc
Confidence 888773
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.81 E-value=3.2 Score=50.77 Aligned_cols=184 Identities=10% Similarity=0.081 Sum_probs=96.8
Q ss_pred CCEEEEEecC-CcEEEEEe------CCC--cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---------
Q 002086 555 DDVLDLSWSR-SHLLLSSS------MDK--TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD--------- 616 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs------~Dg--tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D--------- 616 (969)
..+...++++ ++.++... .|. .|.+++... ...... .....+.-.|+| ++..|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt-~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVL-EGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeee-cCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 4567888888 55554443 243 455556532 222222 223477789999 77766665422
Q ss_pred ---CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 617 ---AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL---YSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 617 ---g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~I---wDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|++ -....+.........+ .......+.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l---~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV---GPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe---ecccCCccc
Confidence 234444554444332 3356799999999999988766 477777 4444443211111001 122233467
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEe--CCcceEEE-EeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKF-RGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD--~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
.+.|..++ . |+++..++...+|. +....... ........+..++-+++ .|+....+|
T Consensus 501 ~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 501 SLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cceEecCC-E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 88999987 4 45555555444554 22222111 12112344555655542 344445555
No 380
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.70 E-value=2.1 Score=48.97 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=59.3
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-----------------
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH----------------- 636 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~----------------- 636 (969)
.+.+.|+|+.+++..........+....|+| +++.++... ++.|.++++.++....+....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4678999999988877765578899999999 899888875 578999999887655443322
Q ss_pred -CCEEEEEEccCCCEEEEEeC
Q 002086 637 -EMVTAACYTPDGQNALIGSH 656 (969)
Q Consensus 637 -~~V~sv~fspdg~~Lasgs~ 656 (969)
+.-..+-|+|||++|+....
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceEECCCCCEEEEEEE
Confidence 12356889999999987543
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.70 E-value=2.7 Score=45.85 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=92.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee-eec-----
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV-DFQ----- 679 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~-~~~----- 679 (969)
.++.|+.|..+| |+++++..............|..+...++-+.+++-+ |+.+++|++........... ...
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 578899999988 9999994332222223333499999999877777665 59999999987655432110 000
Q ss_pred ccccCCCCCeEEEE-EcCCCCceEEEEeCCCcEEEEeCCc---ce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 680 TKKKSSTRKITGFQ-FSPSNPSEVLVTSADSRIRILDGLD---IV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 680 ~~~~~h~~~It~l~-fspd~~~~l~sgs~Dg~I~IwD~~~---~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
.........+..++ -........++......|.+|.... .. ..++...-...+..++|. +..|+.|..+ ...
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~ 160 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFY 160 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceE
Confidence 00122333455544 1222224455555555888876332 22 345556666778899998 5677777754 478
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
+.|+.++
T Consensus 161 ~idl~~~ 167 (275)
T PF00780_consen 161 LIDLNTG 167 (275)
T ss_pred EEecCCC
Confidence 8888863
No 382
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.56 E-value=16 Score=41.22 Aligned_cols=146 Identities=11% Similarity=0.058 Sum_probs=87.5
Q ss_pred CcEEEEEeCCCcEEEEECC-CCcEEEEe-----ecCCCe-EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE--ec-
Q 002086 565 SHLLLSSSMDKTVRLWDME-TKSCLKLF-----AHNDYV-TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW--TD- 634 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~-t~~~i~~~-----~h~~~V-~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~--~~- 634 (969)
+..|.+-|.||.+.-..+. .|+..... ....++ ..-++.. .+..++-.+.+|.|+-.|+........ ..
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 4668888899998888887 45544221 111222 2333444 456666688999999999987653211 10
Q ss_pred C------C----CCEEEEEEccCCCEEEEEeCC---C-------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 635 L------H----EMVTAACYTPDGQNALIGSHK---G-------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 635 ~------~----~~V~sv~fspdg~~Lasgs~d---g-------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
. . +...-+++++..+.|.+--.. | .|.+||+.+.+.+....+ ..++.+|+.
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---------~~~~~Si~V 296 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---------EHPIDSIAV 296 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------EEEESEEEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------CCccceEEE
Confidence 0 0 123457788766655553322 1 577888888887654432 123668999
Q ss_pred cCCCCceEEEE-eCCCcEEEEeCCcce
Q 002086 695 SPSNPSEVLVT-SADSRIRILDGLDIV 720 (969)
Q Consensus 695 spd~~~~l~sg-s~Dg~I~IwD~~~~~ 720 (969)
+.+...+|++. ..++.|.+||..+..
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred ccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 98876666655 467999999976543
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=1.4 Score=55.04 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=72.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEE--EEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec-CCC---C
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCL--KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD-LHE---M 638 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i--~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~~---~ 638 (969)
+..++.|+..|.|...|+...-+. .-....++|++++|+. ++..++.|-.+|.|.+||+..+++.+.+. +.. .
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 467888999999999998765321 1114568999999998 99999999999999999999987665443 333 3
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 639 VTAACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
|..+.+..++..++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 444555556667888887776 55543
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.37 E-value=8.6 Score=44.46 Aligned_cols=192 Identities=13% Similarity=0.079 Sum_probs=92.6
Q ss_pred cEEEEEe-CCCcEEEEECCC----CcEEEEee----cC----CCeEEEEEecCCCCEEEEEEC--C----CeEEEEeCCC
Q 002086 566 HLLLSSS-MDKTVRLWDMET----KSCLKLFA----HN----DYVTCIQFNPMDDDYFISGSL--D----AKVRIWSISD 626 (969)
Q Consensus 566 ~~L~Sgs-~DgtV~IWDl~t----~~~i~~~~----h~----~~V~sv~fsp~~~~~L~sgs~--D----g~I~IWDl~~ 626 (969)
++|+..+ ..+.|+|.|+.+ .+..+++. +. .....+...| +++.++++-. + |-+.++|-.+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 5666665 788999999984 34455542 11 1223344455 7888887532 2 4588888887
Q ss_pred ceEEEEecCC----CCEEEEEEccCCCEEEEEeC--------------------CCcEEEEEcCCCceeeeeeeeecccc
Q 002086 627 RLVVDWTDLH----EMVTAACYTPDGQNALIGSH--------------------KGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 627 ~~~~~~~~~~----~~V~sv~fspdg~~Lasgs~--------------------dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
-++....... ..-+.+-|.|..+.+++..- ..++.+||+...+..+...+.
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg----- 241 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG----- 241 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES------
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC-----
Confidence 6666543332 23466777887777777532 357999999999987765431
Q ss_pred cCCCCCeEEEEEc--CCCCceEEEEeCCCcEEEEeC-Cc--c--eEEEEe-------e---cC-------CCCeEEEEEe
Q 002086 683 KSSTRKITGFQFS--PSNPSEVLVTSADSRIRILDG-LD--I--VHKFRG-------F---RN-------TSSQISAAFN 738 (969)
Q Consensus 683 ~~h~~~It~l~fs--pd~~~~l~sgs~Dg~I~IwD~-~~--~--~~~~~~-------~---~~-------~~~V~sl~fs 738 (969)
....-...|.|. |....-++.+...++|..|-. .+ . ...... . .- ..-|+.+.+|
T Consensus 242 -~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 242 -EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred -CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 112234455554 444344555555666666532 11 1 111111 0 00 2457899999
Q ss_pred CCCCEEEEEeC-CCcEEEEEcCCCCcc
Q 002086 739 ADGKYIISASE-DSQVYVWKREEHRNA 764 (969)
Q Consensus 739 pdg~~LaSgs~-Dg~I~IWdl~t~~~~ 764 (969)
.|.++|..++. +|.|+.||+..+..+
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 99999987765 899999999986443
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=0.95 Score=52.45 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=94.1
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCC-------CEEEEEECCCeEEEEeCCCce--EEEEec--
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDD-------DYFISGSLDAKVRIWSISDRL--VVDWTD-- 634 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~-------~~L~sgs~Dg~I~IWDl~~~~--~~~~~~-- 634 (969)
-+|.++..-..|+-.|++.|+.+..+.....|.-+.+.| +. ..-+.|-.|..|.-||.+-.. .+.+..
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 345566666789999999999999997777788888887 32 233556778889999987432 222221
Q ss_pred ---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 635 ---LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 635 ---~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
......|.+-..+| +|++|+.+|.|++||--.... .....+-..+|..+..+.+| .+|+++ .+..+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~A--------KTAlPgLG~~I~hVdvtadG-Kwil~T-c~tyL 494 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRA--------KTALPGLGDAIKHVDVTADG-KWILAT-CKTYL 494 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhh--------hhcccccCCceeeEEeeccC-cEEEEe-cccEE
Confidence 22345566666555 899999999999999733221 22236678899999999988 455444 45555
Q ss_pred EEEe
Q 002086 712 RILD 715 (969)
Q Consensus 712 ~IwD 715 (969)
.+.+
T Consensus 495 lLi~ 498 (644)
T KOG2395|consen 495 LLID 498 (644)
T ss_pred EEEE
Confidence 5554
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.11 E-value=4 Score=48.32 Aligned_cols=151 Identities=12% Similarity=0.175 Sum_probs=94.8
Q ss_pred CCCEEEEEecCCcE-EEEEe--CCCcEEEEECCCCcEEEEeecCCCeEEEEEecC---CCCEEEEEECCCeEEEEeCCC-
Q 002086 554 LDDVLDLSWSRSHL-LLSSS--MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM---DDDYFISGSLDAKVRIWSISD- 626 (969)
Q Consensus 554 ~~~I~~l~fs~~~~-L~Sgs--~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~---~~~~L~sgs~Dg~I~IWDl~~- 626 (969)
-.+|..++|..|+. ++|.- ..|.+++=|- .+++.-..|..+.|.|. +-..+++......|.||.+.-
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 35788999998544 44432 2333332221 23455567889999983 123566677788999999842
Q ss_pred ----ceEEE--EecC--CCC--EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 627 ----RLVVD--WTDL--HEM--VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 627 ----~~~~~--~~~~--~~~--V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.+.+. .-.. .-+ ...+.|+|....|++-.....-.++++.......... ....+.|.|.+|.+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD-------i~~~G~IhCACWT~ 165 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD-------IKTSGLIHCACWTK 165 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe-------ccCCceEEEEEecC
Confidence 22221 1111 111 2457899998888887776666677766443221111 24567899999999
Q ss_pred CCCceEEEEeCCCcEEEEeCC
Q 002086 697 SNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~ 717 (969)
||.+++++.+..=.-+|||..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCc
Confidence 997666666777778999943
No 387
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=0.68 Score=57.93 Aligned_cols=123 Identities=12% Similarity=0.164 Sum_probs=83.8
Q ss_pred CEEEEEEccCCCEEEEE--eCCCcEEEEEcCCCceeeeee-eeecc--cccCCCCCeEEEEEcCCCCceEEEEeCCCcEE
Q 002086 638 MVTAACYTPDGQNALIG--SHKGSCRLYSIEDSKLHQLNQ-VDFQT--KKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasg--s~dg~I~IwDl~~~~~~~~~~-~~~~~--~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~ 712 (969)
.+..+...+|+...++. +.+-.|..||++......... ..+.. ..........++.|.|.-+...++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45566666777665543 344488999998654322111 11111 11223445677889998777888899999999
Q ss_pred EEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 713 ILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 713 IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+..+...............+++++|+|.|+.++.|-..|++.-|...-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 988665444444444566789999999999999999999999987653
No 388
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.77 E-value=12 Score=45.17 Aligned_cols=196 Identities=16% Similarity=0.114 Sum_probs=110.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC--eE----------EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY--VT----------CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~--V~----------sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
+..|+.++.++.|.-.|..+|+.+-.+..... +. .+++ .+..++.++.|+.|.-+|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 67888888899999999999998877643211 11 1223 245777888999999999999988754
Q ss_pred ecCCCC--EEEEEEcc--CCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccc------------c-------
Q 002086 633 TDLHEM--VTAACYTP--DGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKK------------K------- 683 (969)
Q Consensus 633 ~~~~~~--V~sv~fsp--dg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~------------~------- 683 (969)
...... -..+.-+| .+..++++.. +|.|.-+|..+++.+-.......... .
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432211 00111112 1235555543 68999999999987644322111000 0
Q ss_pred ----CCCCCe-EEEEEcCCCCceEEEEeCC-----C-----------cEEEEeCCcceEEEE--eecCC-------CCeE
Q 002086 684 ----SSTRKI-TGFQFSPSNPSEVLVTSAD-----S-----------RIRILDGLDIVHKFR--GFRNT-------SSQI 733 (969)
Q Consensus 684 ----~h~~~I-t~l~fspd~~~~l~sgs~D-----g-----------~I~IwD~~~~~~~~~--~~~~~-------~~V~ 733 (969)
.....+ ..+.+.|.. .+++.+..+ + .|.-.|..+...+.. ...|. ....
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 001111 123566644 355555422 2 233444443333322 22221 1111
Q ss_pred EEEEeCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 002086 734 SAAFNADGK---YIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 734 sl~fspdg~---~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
-+.+..+|+ .|+.+..+|.+++.|..+++.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 223335776 7889999999999999996543
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.77 E-value=17 Score=39.49 Aligned_cols=184 Identities=11% Similarity=0.033 Sum_probs=106.0
Q ss_pred CEEEEEe-cCCcEEEEEeCCC--cEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 556 DVLDLSW-SRSHLLLSSSMDK--TVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 556 ~I~~l~f-s~~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
-...+.| ..+.++-+.+.-| .|+.+|+.+++.+.... ....--.|+.. ++..+.-.-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 3457888 4467777777766 79999999999886653 23333445554 3444555566799999999998877
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
..+.....=..++ .+++.|+.......++++|..+.+......+... ......++.+.|.. | ..++-.-....
T Consensus 124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~---g~pv~~LNELE~i~-G-~IyANVW~td~ 196 (264)
T PF05096_consen 124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN---GRPVSNLNELEYIN-G-KIYANVWQTDR 196 (264)
T ss_dssp EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET---TEE---EEEEEEET-T-EEEEEETTSSE
T ss_pred EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEEC---CEECCCcEeEEEEc-C-EEEEEeCCCCe
Confidence 7766666666666 5678888888888999999988776655444321 12233455566652 2 33333344444
Q ss_pred EEEEeCCcceE--EEEe-------------ecCCCCeEEEEEeCCCCEEEEEe
Q 002086 711 IRILDGLDIVH--KFRG-------------FRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 711 I~IwD~~~~~~--~~~~-------------~~~~~~V~sl~fspdg~~LaSgs 748 (969)
|...|..+..- .+.. .....-.+.+++.|....|...+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555433221 1110 01134467899998665544443
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.57 E-value=9.1 Score=44.25 Aligned_cols=183 Identities=17% Similarity=0.193 Sum_probs=88.7
Q ss_pred CcEEEEEe------CCCcEEEEECCCCcEEEEeec----CCCeEEEEEecCCCCEEEEEEC-------------------
Q 002086 565 SHLLLSSS------MDKTVRLWDMETKSCLKLFAH----NDYVTCIQFNPMDDDYFISGSL------------------- 615 (969)
Q Consensus 565 ~~~L~Sgs------~DgtV~IWDl~t~~~i~~~~h----~~~V~sv~fsp~~~~~L~sgs~------------------- 615 (969)
+++++++- .-|-+.+.|-++.+....... ...-+.+-|.| ..+.+++...
T Consensus 141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~ 219 (461)
T PF05694_consen 141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGK 219 (461)
T ss_dssp --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-
T ss_pred ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhccc
Confidence 55666642 234677888888777766632 33456777888 7788887643
Q ss_pred -CCeEEEEeCCCceEEEEecCC---CCEEEEEEccC--CCEEEEEe-CCCcEE-EEEcCCCceeeeeeeeecccc-----
Q 002086 616 -DAKVRIWSISDRLVVDWTDLH---EMVTAACYTPD--GQNALIGS-HKGSCR-LYSIEDSKLHQLNQVDFQTKK----- 682 (969)
Q Consensus 616 -Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~fspd--g~~Lasgs-~dg~I~-IwDl~~~~~~~~~~~~~~~~~----- 682 (969)
..++.+||+.+.++++.+... ..+..|.|..+ ..+-++|+ -..+|. +|....++......+.+..+.
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 467999999999999888776 34667777654 44444433 334444 444455554443333332221
Q ss_pred --------cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEeec----------------CCCCeEEE
Q 002086 683 --------KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGFR----------------NTSSQISA 735 (969)
Q Consensus 683 --------~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~----------------~~~~V~sl 735 (969)
..-..-|+.|..|.|+..+.+++-.+|.|+.||+... ....+.+. -.+...-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 1113558999999998555666678999999997642 22221111 01122457
Q ss_pred EEeCCCCEEEEEe
Q 002086 736 AFNADGKYIISAS 748 (969)
Q Consensus 736 ~fspdg~~LaSgs 748 (969)
..|.||+.|...+
T Consensus 380 qlS~DGkRlYvTn 392 (461)
T PF05694_consen 380 QLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTSSEEEEE-
T ss_pred EEccCCeEEEEEe
Confidence 7888888877654
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.54 E-value=16 Score=40.74 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=77.6
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-Cc
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-SK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~ 669 (969)
.-.+.+..+..++ ++.+++++.......-||--... ..........|..|.|.|++.+.+++ ..|.|++=+... ..
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 4456788888887 88888777665556678765432 22333345789999999998776655 788888877221 11
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE-eCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL-DGLD-IVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw-D~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
..... ..........+..++|.+++ .+.+++..|.+.+= |..+ ....-....-......+.|..+.+-+|.
T Consensus 220 ~w~~~----~~~~~~~~~~~ld~a~~~~~--~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l- 292 (302)
T PF14870_consen 220 TWSEP----IIPIKTNGYGILDLAYRPPN--EIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL- 292 (302)
T ss_dssp EE-------B-TTSS--S-EEEEEESSSS---EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred ccccc----cCCcccCceeeEEEEecCCC--CEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence 11110 01112344568999999875 44455556655443 3222 2221112233455778888766555554
Q ss_pred eCCCcEEEE
Q 002086 748 SEDSQVYVW 756 (969)
Q Consensus 748 s~Dg~I~IW 756 (969)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 458887665
No 392
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.28 E-value=27 Score=40.68 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=29.2
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEec
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNP 604 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp 604 (969)
..++.|..+|.|++|.-...-.....-|..+|..|.+..
T Consensus 80 ~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 80 TCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 578999999999999984433333446888888888754
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.24 E-value=3.6 Score=50.19 Aligned_cols=184 Identities=14% Similarity=0.175 Sum_probs=102.0
Q ss_pred CcEEEEEeCC------CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEE
Q 002086 565 SHLLLSSSMD------KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVV 630 (969)
Q Consensus 565 ~~~L~Sgs~D------gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~ 630 (969)
+.+++.|+.+ ..|..+|..++...... .....-.++++. ++..+++|+.| .++..||...++=.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 5666777766 46888998888554433 344445666666 47888899998 35788888877633
Q ss_pred EEecCCCCEEEE-EEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 631 DWTDLHEMVTAA-CYTPDGQNALIGSHKG-----SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 631 ~~~~~~~~V~sv-~fspdg~~Lasgs~dg-----~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
........-... .-.-+|...++|+.|| +|..||..+.+...... ......+.....-++..+++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---------m~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---------MLTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC---------CCcceeeeEEEEECCEEEEE
Confidence 222111111111 1122677888999887 47778888776543321 11123333333333367778
Q ss_pred EeCCCc------EEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEEcCC
Q 002086 705 TSADSR------IRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQ-----VYVWKREE 760 (969)
Q Consensus 705 gs~Dg~------I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~-----I~IWdl~t 760 (969)
|+.++. +..||..+..-.... ......-..++ .-++.+.+.||.|+. |..||..+
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCC
Confidence 875554 566774432221111 11111111222 236778888887763 66677766
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.08 E-value=0.52 Score=36.99 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 728 NTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
....|..++|+|...+||.++.||.|.||+++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34568899999999999999999999999994
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.04 E-value=14 Score=39.08 Aligned_cols=186 Identities=10% Similarity=0.108 Sum_probs=98.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCC---CEEEEEECCCeEEEEeCCCc--eEEEE-e-----
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDD---DYFISGSLDAKVRIWSISDR--LVVDW-T----- 633 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~---~~L~sgs~Dg~I~IWDl~~~--~~~~~-~----- 633 (969)
+.++..--..|.|.-||+.+.+..+.--...++.++.+ |..+ .+.+.++..-.|--||.... .+... .
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 34555555667788899888665443322222333333 2233 23334444344556764332 22211 1
Q ss_pred cCCCCEEEEEEccCCCEEEEEeC-C---------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 634 DLHEMVTAACYTPDGQNALIGSH-K---------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~-d---------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
......+.-..+|+|++++ |.. | |.++.|-.... ... ......--..++|+.+...+.+
T Consensus 106 ~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~-v~~---------i~~~v~IsNgl~Wd~d~K~fY~ 174 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQ-VEL---------IWNCVGISNGLAWDSDAKKFYY 174 (310)
T ss_pred HHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCCC-cee---------eehhccCCccccccccCcEEEE
Confidence 1124456677889999844 332 2 33344432211 100 0122233456889887767778
Q ss_pred EEeCCCcEEEEeC-------CcceEEEEeec----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 704 VTSADSRIRILDG-------LDIVHKFRGFR----NTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 704 sgs~Dg~I~IwD~-------~~~~~~~~~~~----~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+-+.+-.|.-||. .+....+.... ....--.+++..+|.+.+++-..++|...|..+++
T Consensus 175 iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 175 IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred EccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence 8888899988871 12222222111 11111245567788888888888999999998843
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.98 E-value=8.3 Score=41.86 Aligned_cols=199 Identities=9% Similarity=0.076 Sum_probs=105.1
Q ss_pred EEEecC--CcEEEEEeCCCc-EEEEECCCCcEEEEee---cCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCc
Q 002086 559 DLSWSR--SHLLLSSSMDKT-VRLWDMETKSCLKLFA---HNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDR 627 (969)
Q Consensus 559 ~l~fs~--~~~L~Sgs~Dgt-V~IWDl~t~~~i~~~~---h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~ 627 (969)
.+.|+| ..-++.+-.-|+ ..++|....+...++. .....--=.|+| ++.+|++.-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 455665 344555555454 4578888777655441 111111226888 89998886554 77999999864
Q ss_pred --eEEEEecCCCCEEEEEEccCCCEEEEEeC------------------CCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 628 --LVVDWTDLHEMVTAACYTPDGQNALIGSH------------------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 628 --~~~~~~~~~~~V~sv~fspdg~~Lasgs~------------------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
.+-.+..+.-....+.+.+||+.++++.. .-.+.+.|..++.++....++ ...+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp----~~l~~l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP----ASLRQL 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc----hhhhhc
Confidence 23345556666788999999999887632 112333343344433222211 013445
Q ss_pred CeEEEEEcCCCCceEEEEeCCCc-------EEEEeCCcceEEEEee-----cCCCCeEEEEEeCCCCEEE-EEeCCCcEE
Q 002086 688 KITGFQFSPSNPSEVLVTSADSR-------IRILDGLDIVHKFRGF-----RNTSSQISAAFNADGKYII-SASEDSQVY 754 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~-------I~IwD~~~~~~~~~~~-----~~~~~V~sl~fspdg~~La-Sgs~Dg~I~ 754 (969)
.|..+...+++ ..++.+-..|. |-.+...+....+... .-..+|-+++.+.+..+++ |+=..+...
T Consensus 227 SiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 227 SIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred ceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 56677777766 33332222111 1111111111111100 1123456777776555554 444455688
Q ss_pred EEEcCCCCc
Q 002086 755 VWKREEHRN 763 (969)
Q Consensus 755 IWdl~t~~~ 763 (969)
+||..++..
T Consensus 306 i~da~tG~v 314 (366)
T COG3490 306 IWDAATGAV 314 (366)
T ss_pred EEEcCCCcE
Confidence 999999543
No 397
>PHA03098 kelch-like protein; Provisional
Probab=91.50 E-value=4.9 Score=48.63 Aligned_cols=183 Identities=11% Similarity=0.131 Sum_probs=89.8
Q ss_pred CCcEEEEEeCCC------cEEEEECCCCcEEEEee---cCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCceE
Q 002086 564 RSHLLLSSSMDK------TVRLWDMETKSCLKLFA---HNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDRLV 629 (969)
Q Consensus 564 ~~~~L~Sgs~Dg------tV~IWDl~t~~~i~~~~---h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~~ 629 (969)
.+..++.|+.++ .+..||..+.+....-. .......+.+ ++..++.||.+ ..+..||..+++-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 356667776543 57788888776543221 1112222222 56777778765 3477888877653
Q ss_pred EEEecCCCC--EEEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 630 VDWTDLHEM--VTAACYTPDGQNALIGSHK------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 630 ~~~~~~~~~--V~sv~fspdg~~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
........+ -.+++ .-+++.++.|+.+ ..+..||..+.+.......+ . . .... ++... ++ ..
T Consensus 371 ~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~---~-r~~~-~~~~~-~~-~i 440 (534)
T PHA03098 371 REEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--I---S-HYGG-CAIYH-DG-KI 440 (534)
T ss_pred eeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--c---c-ccCc-eEEEE-CC-EE
Confidence 332221111 11222 2356666777632 35888998876654322111 0 0 1111 12222 23 56
Q ss_pred EEEEeCCC--------cEEEEeCCcceEE-EEeecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCC
Q 002086 702 VLVTSADS--------RIRILDGLDIVHK-FRGFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREE 760 (969)
Q Consensus 702 l~sgs~Dg--------~I~IwD~~~~~~~-~~~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t 760 (969)
++.|+.+. .+.+||..+..-. .........-.+++ .-++++++.|+.+ ..|.+||..+
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 66665432 3788885532211 11111111111121 2267777777764 4677888776
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.44 E-value=0.49 Score=37.18 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=29.2
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE 484 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~ 484 (969)
...|.+++|+|...+||.|..||.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 346999999999999999999999999998 444
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.41 E-value=2 Score=53.97 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=85.8
Q ss_pred cEEEEEeCCCcEEEEECCCCcEE--------EE----eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEEE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCL--------KL----FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDW 632 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i--------~~----~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~ 632 (969)
..++..+.+-.|..||+.+-..- +. +.......++.|+|.-....+++..|+.|++..+.... .+..
T Consensus 115 s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s 194 (1405)
T KOG3630|consen 115 SVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS 194 (1405)
T ss_pred EEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc
Confidence 34444555667889998753211 11 12344567889998556677888899999998876433 3333
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
......+++++|+|.|+.+++|-..|++.-|...-.........+ ......|.+|+|-...
T Consensus 195 ~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp-----~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 195 FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP-----VEENYRVLSVTWLSTQ 255 (1405)
T ss_pred cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC-----cCCCcceeEEEEecce
Confidence 456677999999999999999999999999876543221111110 1125789999998754
No 400
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.40 E-value=33 Score=39.99 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=55.6
Q ss_pred EEecC-CcEEEEEeCCCcEEE---EECCC-----CcEEEEe----ecC--CCeEEEEEecC----------CCCEEEEEE
Q 002086 560 LSWSR-SHLLLSSSMDKTVRL---WDMET-----KSCLKLF----AHN--DYVTCIQFNPM----------DDDYFISGS 614 (969)
Q Consensus 560 l~fs~-~~~L~Sgs~DgtV~I---WDl~t-----~~~i~~~----~h~--~~V~sv~fsp~----------~~~~L~sgs 614 (969)
++.++ +++|+.+..+.-|.+ |+... +...... .+. ..|+++.+-|. +...+++|.
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ 86 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT 86 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence 44555 667777766666555 54311 1111111 232 57888887763 346789999
Q ss_pred CCCeEEEEeCCCceEEEEecCCCCEEEEEEcc
Q 002086 615 LDAKVRIWSISDRLVVDWTDLHEMVTAACYTP 646 (969)
Q Consensus 615 ~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fsp 646 (969)
.+|.|++|......++...-|..+|..+.+..
T Consensus 87 ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 87 SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred cccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 99999999987665655666777777777654
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.28 E-value=9.3 Score=44.53 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCCEEEEEECCCeEEEEeCCCce-----EEEEecCCCCEEEEEEcc----CCCEEEEEeCCCcEEEEEcCCCcee----e
Q 002086 606 DDDYFISGSLDAKVRIWSISDRL-----VVDWTDLHEMVTAACYTP----DGQNALIGSHKGSCRLYSIEDSKLH----Q 672 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~-----~~~~~~~~~~V~sv~fsp----dg~~Lasgs~dg~I~IwDl~~~~~~----~ 672 (969)
+.+.|++|+..|.++||+...+. ++-......+|..+..-. .....++.-.-..+.||.+....-. .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 45799999999999999986542 344455667887776643 2223333356778888887322110 0
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCC----CceEEEEeCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSN----PSEVLVTSADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~----~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
...+..... ..-......+++-|-| ..++++-+.||.+.+|+-..... .+..+-.++ -++|.+.-..|++
T Consensus 116 ~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg---Pl~Y~~~tDsfvt 191 (418)
T PF14727_consen 116 QYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG---PLCYCPRTDSFVT 191 (418)
T ss_pred EEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc---CeEEeecCCEEEE
Confidence 011111110 1112223333333322 36788889999999999655432 222333333 3678888889999
Q ss_pred EeCCCcEEEEEcCC
Q 002086 747 ASEDSQVYVWKREE 760 (969)
Q Consensus 747 gs~Dg~I~IWdl~t 760 (969)
++.+..|..|+...
T Consensus 192 ~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 192 ASSSWTLECYKYQD 205 (418)
T ss_pred ecCceeEEEecHHH
Confidence 99999999998753
No 402
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.18 E-value=31 Score=39.07 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=38.7
Q ss_pred CCCeEEEEEcCCC------CceEEEEeCCCcEEEEeCCcc--eE-EEEeec-CCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 686 TRKITGFQFSPSN------PSEVLVTSADSRIRILDGLDI--VH-KFRGFR-NTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 686 ~~~It~l~fspd~------~~~l~sgs~Dg~I~IwD~~~~--~~-~~~~~~-~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
...++.+.|.... ..++++.-..+.|........ .. ...... ....+..+++.|||.++++-..+|.|+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3566777776432 134444444566766664322 11 112222 233688999999999999888899875
No 403
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.00 E-value=36 Score=39.55 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=68.1
Q ss_pred EEEEEecC-CcEEEEE-eCCC----cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC-----------eE
Q 002086 557 VLDLSWSR-SHLLLSS-SMDK----TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA-----------KV 619 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sg-s~Dg----tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg-----------~I 619 (969)
+..+.++| +++|+.+ +..| +|+++|+.+++.+...-.......+.|.+ ++..|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence 33577888 6666644 4444 59999999998765331122223499998 766665554333 37
Q ss_pred EEEeCCCce---EEEEecC-CCC-EEEEEEccCCCEEEEEeCC----CcEEEEEcCCC
Q 002086 620 RIWSISDRL---VVDWTDL-HEM-VTAACYTPDGQNALIGSHK----GSCRLYSIEDS 668 (969)
Q Consensus 620 ~IWDl~~~~---~~~~~~~-~~~-V~sv~fspdg~~Lasgs~d----g~I~IwDl~~~ 668 (969)
+.|.+.+.. .+.+... ... ...+..++++++|++.... ..+++.++...
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 888887652 2222222 233 6788999999998865433 34777888764
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.98 E-value=0.56 Score=49.07 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCcEEEEECCCC-cEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCC--CEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETK-SCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE--MVT 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~-~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~--~V~ 640 (969)
+..++.|+.+|.|.+|+.... .....+ .-...|.++--.-.++.+..+++.||.|+.|++.-.+.+....++. ++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 578999999999999998721 111111 1222333333222255688999999999999999888777666543 344
Q ss_pred EEEEccCCCEEEEE--eCCCcEEEEEcCC
Q 002086 641 AACYTPDGQNALIG--SHKGSCRLYSIED 667 (969)
Q Consensus 641 sv~fspdg~~Lasg--s~dg~I~IwDl~~ 667 (969)
.......+++++.. +.+..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 44444444555555 5556666666543
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=1 Score=56.26 Aligned_cols=102 Identities=14% Similarity=0.187 Sum_probs=69.6
Q ss_pred CCCEEEEEECCCeEEEEeCCCceE--EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLV--VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
....++.|+..|.|-..|+...-. ..-.....+|++++|+.+|..++.|-.+|.|.+||+..++........ .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-----~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-----G 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-----C
Confidence 356788888889999999877522 222334578999999999999999999999999999998776543221 1
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.....|..+.+..++ ..++++...|. +|.
T Consensus 173 ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQN-SKLLTSDTGGS--FWK 201 (1206)
T ss_pred CccceEEEEEEeCCC-cEEEEccCCCc--eEE
Confidence 122223333344444 46666666665 454
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.61 E-value=6.5 Score=46.61 Aligned_cols=156 Identities=14% Similarity=0.180 Sum_probs=85.2
Q ss_pred cCCCeEEEEEecCCCCEEEEEE---CCCeEEEEeCCCceEEEEecCCCCEEEEEEccC----CCEEEEEeCCCcEEEEEc
Q 002086 593 HNDYVTCIQFNPMDDDYFISGS---LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPD----GQNALIGSHKGSCRLYSI 665 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs---~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspd----g~~Lasgs~dg~I~IwDl 665 (969)
--.+|..++|. ||+.++-.. .+|.+++=| ..+ .+.-.-|..++|.|- -..+++.-....|.||.+
T Consensus 18 AiHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~v---iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 18 AIHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SKV---IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhccccceEec--CCCEEEEEeeeeeCCccccCC---ccE---eeccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 34678899997 566544322 233333322 122 233345889999985 335666677889999988
Q ss_pred CCC-----ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEEeecCCCCeEEEEEeC
Q 002086 666 EDS-----KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 666 ~~~-----~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fsp 739 (969)
... +.......++. ....---.++.|+|.. ..|++-.....-.+++... ...........+.|.|.+|.+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~---e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~ 165 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIR---EPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK 165 (671)
T ss_pred ccCccccccceeeeeeecc---CCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC
Confidence 632 22111111110 0111122457799987 3444433333333444321 122222235667799999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCC
Q 002086 740 DGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 740 dg~~LaSgs~-Dg~I~IWdl~t 760 (969)
||+.|+.+-. .=.-+|||-..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCch
Confidence 9988876643 33467888654
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.10 E-value=4.1 Score=47.19 Aligned_cols=147 Identities=18% Similarity=0.137 Sum_probs=91.8
Q ss_pred CCCEE-EEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCC-------CEEEEEeCCCcEEEEEcCCCc-eeeeeee
Q 002086 606 DDDYF-ISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDG-------QNALIGSHKGSCRLYSIEDSK-LHQLNQV 676 (969)
Q Consensus 606 ~~~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg-------~~Lasgs~dg~I~IwDl~~~~-~~~~~~~ 676 (969)
+.++| ..|+.-..++-.|+..|+++.....+..+ -+.|.|+. ..-++|-.+..|.-.|.+-.. .+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee--
Confidence 34443 44666677888899999998877777666 78888853 234455556666655654322 11111
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
..+.........+..-... .++++++..|-|++||-.....+.........|..+..+.+|++|++.+. .+|.+-
T Consensus 555 --esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 555 --ESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLT 629 (776)
T ss_pred --eehhccccccccccccccC--ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEE
Confidence 1111122233344444444 49999999999999995443333333344556888999999999887774 578887
Q ss_pred EcCC
Q 002086 757 KREE 760 (969)
Q Consensus 757 dl~t 760 (969)
|+.-
T Consensus 630 d~~i 633 (776)
T COG5167 630 DVPI 633 (776)
T ss_pred eccc
Confidence 8754
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.01 E-value=36 Score=37.97 Aligned_cols=187 Identities=10% Similarity=0.081 Sum_probs=89.1
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee----cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--E
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA----HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--V 630 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~ 630 (969)
..+|.|..+..+++| ..+ +.+.-...|+.-..+. -.+....+.... + ..+..++..|.|+. ....++- .
T Consensus 64 l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~-~~~~l~~~~G~iy~-T~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-D-GSAELAGDRGAIYR-TTDGGKTWQA 138 (302)
T ss_dssp EEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-T-TEEEEEETT--EEE-ESSTTSSEEE
T ss_pred EEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-C-CcEEEEcCCCcEEE-eCCCCCCeeE
Confidence 556777654555544 344 4444444555443332 223334444443 2 34444445554432 2222321 1
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
........+..+..+++|.+++++..-....-||--....... .......|..+.|.|++ .+.+ ....|.
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~--------~r~~~~riq~~gf~~~~-~lw~-~~~Gg~ 208 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH--------NRNSSRRIQSMGFSPDG-NLWM-LARGGQ 208 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE--------E--SSS-EEEEEE-TTS--EEE-EETTTE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE--------ccCccceehhceecCCC-CEEE-EeCCcE
Confidence 2233446788899999999888886655556676543222211 14456889999999986 3444 448888
Q ss_pred EEEEeCCcceEEEEe----e-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 711 IRILDGLDIVHKFRG----F-RNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 711 I~IwD~~~~~~~~~~----~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
|++=+.......+.. . .....+..++|.+++...++|+ .|.++ ...+.
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~Dg 261 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDG 261 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESST
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCC
Confidence 888873333333222 1 2233478999999988777666 45443 34444
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.37 E-value=12 Score=43.08 Aligned_cols=149 Identities=7% Similarity=0.077 Sum_probs=75.7
Q ss_pred CCeEEEEEecCCCCEEEEEE-----------CCC-eEEEEeCCC--ce---EEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002086 595 DYVTCIQFNPMDDDYFISGS-----------LDA-KVRIWSISD--RL---VVDWTDLHEMVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs-----------~Dg-~I~IWDl~~--~~---~~~~~~~~~~V~sv~fspdg~~Lasgs~d 657 (969)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++ ...+.........+++.++| |++++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567788888 777776642 223 677776543 22 22233333456889999988 4444444
Q ss_pred CcEEEEEcCCCceee-eee-e--eecccccCCCCCeEEEEEcCCCCceEEEEeCC-------------------CcEEEE
Q 002086 658 GSCRLYSIEDSKLHQ-LNQ-V--DFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-------------------SRIRIL 714 (969)
Q Consensus 658 g~I~IwDl~~~~~~~-~~~-~--~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-------------------g~I~Iw 714 (969)
...++.|........ ... + .+......+......++|.|+| .++++.+.. +.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 433344553321110 000 0 0111001124557789999998 444433311 334445
Q ss_pred eCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 715 DGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 715 D~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
+........... .......++|+++|+++++-.
T Consensus 170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence 533222222121 223346788999988877644
No 410
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.23 E-value=6 Score=42.87 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=46.3
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD 664 (969)
....|-+|+.+..++-..++.-..+...+||..++.++......+. .-.-+...-|++.+.+|.|.+|.
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~da---aGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDA---AGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccc---ccceeccCceEEecCCceEEecc
Confidence 4567889999873344445555556688999999998876554431 22233445677778889988884
No 411
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.70 E-value=17 Score=38.12 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=80.5
Q ss_pred CEEEEEECCCeEEEEeCCC--ceEEEEecCCCCEEEEEEccCCCEEEEEeCCC------cEEEE---EcC--CCceeeee
Q 002086 608 DYFISGSLDAKVRIWSISD--RLVVDWTDLHEMVTAACYTPDGQNALIGSHKG------SCRLY---SIE--DSKLHQLN 674 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~--~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg------~I~Iw---Dl~--~~~~~~~~ 674 (969)
+.|+.+...+.|.+|++.. .+++..+..-+.|..+.++..|++|++--.+. .+|+| ... ........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 4554446678899999983 45666666668999999999999999854322 45664 222 11111100
Q ss_pred eee--------------ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-----EEEee-------cC
Q 002086 675 QVD--------------FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-----KFRGF-------RN 728 (969)
Q Consensus 675 ~~~--------------~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-----~~~~~-------~~ 728 (969)
... +..-...-...+.+++..|-.+ .|++|+ ++.+.||....... .+..+ ..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 000 0000012245677888888663 444444 45677776332111 11111 11
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 729 TSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.-....++|. +.|+|..+ +-.+++.++.
T Consensus 187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred CceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 1223445554 56777776 5577777764
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.16 E-value=23 Score=38.43 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=87.4
Q ss_pred CeEEEEEecCCCCEEEEEE---CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE-cCCCcee
Q 002086 596 YVTCIQFNPMDDDYFISGS---LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS-IEDSKLH 671 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs---~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD-l~~~~~~ 671 (969)
.+.+.++++ ++..++... ....++++.......... ....+..-.|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 787776655 334456655443322222 334688889999988777777677767664 3333322
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe--CCCcEEEEeCC---cc-eEE----EE-eecCCCCeEEEEEeCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS--ADSRIRILDGL---DI-VHK----FR-GFRNTSSQISAAFNAD 740 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs--~Dg~I~IwD~~---~~-~~~----~~-~~~~~~~V~sl~fspd 740 (969)
.. .+.. ......|+.+.++|||.+..++.. .++.|++--+. .. ... .. .......++.+.|.++
T Consensus 102 ~~-~v~~----~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 102 PV-EVDW----PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred eE-Eecc----cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 11 1111 111128999999999955544442 34666665311 11 111 11 1123457889999999
Q ss_pred CCEEEEEeCCCc
Q 002086 741 GKYIISASEDSQ 752 (969)
Q Consensus 741 g~~LaSgs~Dg~ 752 (969)
+.+++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 988777765443
No 413
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.16 E-value=11 Score=47.27 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=54.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------Cce-ee--eeeeeecccccCCCCCeEEEEEcCCC--Cce
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIED----------SKL-HQ--LNQVDFQTKKKSSTRKITGFQFSPSN--PSE 701 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~----------~~~-~~--~~~~~~~~~~~~h~~~It~l~fspd~--~~~ 701 (969)
-.|..|.++|+|.+++..+..|.+.+ .+.. ++. .. ...+............|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 45899999999999998887664433 3321 111 11 11111122224556789999999974 478
Q ss_pred EEEEeCCCcEEEEeCCc
Q 002086 702 VLVTSADSRIRILDGLD 718 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~ 718 (969)
|++-..|+++|+||..+
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 99999999999999654
No 414
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.63 E-value=48 Score=36.39 Aligned_cols=160 Identities=14% Similarity=0.184 Sum_probs=104.3
Q ss_pred EEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE---EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002086 588 LKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV---VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 588 i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD 664 (969)
+..+.-.+-+..+.++ +++...+..+.-++|+|+.+... +......+-..++.. .|++..++..+.-+.++|
T Consensus 80 ~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivd 154 (370)
T COG5276 80 LSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVD 154 (370)
T ss_pred EEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEE
Confidence 3344566777888885 57888888888899999987542 333333333444444 588999988788888999
Q ss_pred cCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEEeecCCC-CeEEEEEeCCCC
Q 002086 665 IEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFRGFRNTS-SQISAAFNADGK 742 (969)
Q Consensus 665 l~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~~~~~-~V~sl~fspdg~ 742 (969)
+.+........ ...........++.+- ++-..+..|+-+.|.|..+ ...++.++.+.+ .+.++..+++..
T Consensus 155 vsdpssP~lag-----rya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~ 226 (370)
T COG5276 155 VSDPSSPQLAG-----RYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA 226 (370)
T ss_pred CCCCCCceeee-----eeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee
Confidence 98765433211 1122233334555553 4677778899999999764 345566665555 677888887776
Q ss_pred EEEEEeCCCcEEEEEcCCCC
Q 002086 743 YIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 743 ~LaSgs~Dg~I~IWdl~t~~ 762 (969)
|++... --+.+-|..+++
T Consensus 227 y~vvy~--egvlivd~s~~s 244 (370)
T COG5276 227 YLVVYD--EGVLIVDVSGPS 244 (370)
T ss_pred EEEEcc--cceEEEecCCCC
Confidence 666654 357777877643
No 415
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.09 E-value=17 Score=35.34 Aligned_cols=109 Identities=11% Similarity=0.167 Sum_probs=74.7
Q ss_pred EecC-CcEEEEEeCCCcEEEEECCC--------CcEEEEeecCCCeEEEEEecC----CCCEEEEEECCCeEEEEeCCCc
Q 002086 561 SWSR-SHLLLSSSMDKTVRLWDMET--------KSCLKLFAHNDYVTCIQFNPM----DDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 561 ~fs~-~~~L~Sgs~DgtV~IWDl~t--------~~~i~~~~h~~~V~sv~fsp~----~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
.|.. ...|+.++.-|.|.|.+... ...+..+.....|++|+-.+. ..+.|+.|+ ...|..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 3443 45788888899999998763 335667788889999986653 245666665 467999999988
Q ss_pred eEEEEecCCCCEEEEEEccC---CCEEEEEeCCCcEEEEEcCCCce
Q 002086 628 LVVDWTDLHEMVTAACYTPD---GQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fspd---g~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
.-+.+....+.|.++.+-.- ..-++..+.+..|.-||....+.
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 77767777788888877432 22344444466777777665543
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.80 E-value=17 Score=44.53 Aligned_cols=113 Identities=12% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc--CCCCceEEEEeCCCcEEEE
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS--PSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs--pd~~~~l~sgs~Dg~I~Iw 714 (969)
..+.-+.-+.-++..++-+....+.|||.+.+.+..... -.....|..+.|. |++ +.+++.+....|.+|
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~-------f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES-------FSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLY 101 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee-------ecCCCceeeceeeecCCC-CEEEEEEcCcEEEEE
Confidence 344555555556666665566689999999887543322 1456789999886 566 678888888999888
Q ss_pred eCC-----------cceEEEEeecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 715 DGL-----------DIVHKFRGFRN-TSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 715 D~~-----------~~~~~~~~~~~-~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.-. ..+..+....+ ..+|.+..|.++|.+++.++ +.++|++-.
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred EccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 521 12222322222 25688899999997666554 478888753
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.69 E-value=0.063 Score=64.93 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=81.1
Q ss_pred EEEEecC----CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEE-----------EecCCCCEEEEEECCCeEEEE
Q 002086 558 LDLSWSR----SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ-----------FNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 558 ~~l~fs~----~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~-----------fsp~~~~~L~sgs~Dg~I~IW 622 (969)
.-|.|+| .-++..+-.+++|++.++.+...-...+|...+..++ .+| ||..|+.++.||.++.|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCcccee
Confidence 4455554 4567777788888887776543211114555554443 567 88888888888888888
Q ss_pred eCCC-ce-----EEEEecCC-CCEEEEEEccCC---------CEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 623 SISD-RL-----VVDWTDLH-EMVTAACYTPDG---------QNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 623 Dl~~-~~-----~~~~~~~~-~~V~sv~fspdg---------~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
.+.- ++ +..+..|. .+-.|.-|+.+. .++++++ .+..+++|.....++...+.++.......|
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~ 342 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPH 342 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCC
Confidence 7632 21 12344444 232333333221 2344444 345788888776665421111110001122
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
.+.|+.+....--...++.-+-++.|.+|....
T Consensus 343 ~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 343 DGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred CccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 223322211110001233456788888887443
No 418
>PHA02713 hypothetical protein; Provisional
Probab=86.61 E-value=21 Score=43.62 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=52.3
Q ss_pred CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEEEEecCCCCE-EEEEEc
Q 002086 575 KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVVDWTDLHEMV-TAACYT 645 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~~~~~~~~~V-~sv~fs 645 (969)
..+..||..+++....- .....-.+++.. ++..++.||.+ ..+..||..+..-........+. ......
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 35777888877644322 111111233333 56777777754 34778898877533322211111 111222
Q ss_pred cCCCEEEEEeCCC-----cEEEEEcCCCceee
Q 002086 646 PDGQNALIGSHKG-----SCRLYSIEDSKLHQ 672 (969)
Q Consensus 646 pdg~~Lasgs~dg-----~I~IwDl~~~~~~~ 672 (969)
-+|+..++|+.++ .+..||..+.+...
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 3677778887654 47889988776543
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=86.49 E-value=21 Score=42.74 Aligned_cols=181 Identities=10% Similarity=0.062 Sum_probs=88.6
Q ss_pred CcEEEEEeCCC-----cEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC--CeEEEEeCCCceEEEEecC
Q 002086 565 SHLLLSSSMDK-----TVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD--AKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 565 ~~~L~Sgs~Dg-----tV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D--g~I~IWDl~~~~~~~~~~~ 635 (969)
+.+++.|+.++ ++..||..++.....- .....-.+++.. ++...+.|+.+ ..+..||..++.-......
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 45667777543 5777888876654432 111111122222 56777777754 3578888876654333222
Q ss_pred CCCE-EEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 636 HEMV-TAACYTPDGQNALIGSHKG---SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 636 ~~~V-~sv~fspdg~~Lasgs~dg---~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
..+. ......-+|+..++|+.++ .+..||..+.+........ ........+.+ ++ ..++.|+ .+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~------~~r~~~~~~~~--~~-~IYv~GG---~~ 417 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY------YPHYKSCALVF--GR-RLFLVGR---NA 417 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC------CccccceEEEE--CC-EEEEECC---ce
Confidence 2221 1122233677777777553 4678888776654322111 01111112222 23 5555553 46
Q ss_pred EEEeCCcceEEE-EeecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCC
Q 002086 712 RILDGLDIVHKF-RGFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREE 760 (969)
Q Consensus 712 ~IwD~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t 760 (969)
.+||..+..-.. ........-.+++ --+|+..+.||.+ ..|.+||..+
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 677754322111 1111111111222 2367788888764 3477777765
No 420
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.32 E-value=44 Score=37.05 Aligned_cols=171 Identities=12% Similarity=0.188 Sum_probs=89.6
Q ss_pred cEEEEECCCCcEEEEee-------cCCCeEEEEEecCCC----CEE-EEEECCCeEEEEeCCCceEEEEecCC-------
Q 002086 576 TVRLWDMETKSCLKLFA-------HNDYVTCIQFNPMDD----DYF-ISGSLDAKVRIWSISDRLVVDWTDLH------- 636 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~~-------h~~~V~sv~fsp~~~----~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~~------- 636 (969)
.|.+||+.+++.++.+. ....+..+.+...++ .++ ++=...+-|.|+|+.+++......+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 57789999999888772 345678888876322 233 33334467999999988665443321
Q ss_pred -------------CCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeeeecccccCC-CCCeEEEEE
Q 002086 637 -------------EMVTAACYTP---DGQNALIGSHKGSCRLYSIEDS-----KLHQLNQVDFQTKKKSS-TRKITGFQF 694 (969)
Q Consensus 637 -------------~~V~sv~fsp---dg~~Lasgs~dg~I~IwDl~~~-----~~~~~~~~~~~~~~~~h-~~~It~l~f 694 (969)
..+..++.+| +++.|......+. ++|.+.+. .........-.....+. ......+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 2245555544 4445554443221 22222211 11000000000000111 245667888
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCc-----ceEEEE-eecCCCCeEEEEEeC--CCCEEEEEe
Q 002086 695 SPSNPSEVLVTSADSRIRILDGLD-----IVHKFR-GFRNTSSQISAAFNA--DGKYIISAS 748 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I~IwD~~~-----~~~~~~-~~~~~~~V~sl~fsp--dg~~LaSgs 748 (969)
++.| .++++--..+.|..|+..+ ....+. ....-.....+.+.+ +|.+.+...
T Consensus 194 D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 194 DPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp ETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 8876 6777778889999999765 222222 222245667888888 666555543
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.29 E-value=18 Score=44.23 Aligned_cols=197 Identities=13% Similarity=0.190 Sum_probs=97.3
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW- 632 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~- 632 (969)
+...+|..+|.+..=..+.--.|+|+++.....-... .|. .+-.+.|+ +...|++...+|++++|++-.......
T Consensus 44 gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~s 120 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG-ELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNS 120 (829)
T ss_pred CCceEEEecccccccccccceeEEEEeccccchHHHHhcCC-Ceeeeccc--CCceEEEEeccceEEEeecchhhhcccc
Confidence 4445566665222211244456888887543333333 344 88899998 577888899999999999875543321
Q ss_pred ---ecCCCCEEEEEEccCCCEEEEEeCCCcEE-EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC-Cc-eEEEEe
Q 002086 633 ---TDLHEMVTAACYTPDGQNALIGSHKGSCR-LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN-PS-EVLVTS 706 (969)
Q Consensus 633 ---~~~~~~V~sv~fspdg~~Lasgs~dg~I~-IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~-~~-~l~sgs 706 (969)
......|..+.|..+|- ++-..+|.+. +-+...........+ .....+-+|-...+.+ .. .++-..
T Consensus 121 vg~e~~~~~I~ec~~f~~GV--avlt~~g~v~~i~~~~~~~~~~~~di------P~~~~~~~~Wt~~~~~~~~~~ll~v~ 192 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNGV--AVLTVSGQVILINGVEEPKLRKMPDI------PYNELPKSCWTVFQPHRQSTILLDVD 192 (829)
T ss_pred cccccccCceeEEEEecCce--EEEecCCcEEEEcCCCcchhhhCCCC------CCccCCCcceeEecCCCcceeEEeec
Confidence 11123354444544553 3333344443 333333222111111 1111111222222211 01 111110
Q ss_pred -CCCcEEEEeCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 707 -ADSRIRILDGLD-IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 707 -~Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
..+ ..++.... .............+..+..||+.++|+-=..+|.|.+-+.+..+.
T Consensus 193 ~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 193 VAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred hhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 000 01111111 011111111235678899999999999999999999988876433
No 422
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.05 E-value=41 Score=38.00 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=86.5
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCe------EEEEeCCC-----ce-----EEEEecCCC--------CEEEEEEccCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAK------VRIWSISD-----RL-----VVDWTDLHE--------MVTAACYTPDGQ 649 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~------I~IWDl~~-----~~-----~~~~~~~~~--------~V~sv~fspdg~ 649 (969)
-+.+..|.+.+ ++..+++.+.+|. +..+++.. .. ...+....+ ..-.|++.++|.
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35667888887 6677777788887 66666543 11 111112211 244788877777
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeeeecc-------cccCCCCCeEEEEEcCCCCceEEEEeC-----CCc-
Q 002086 650 NALIGSHK------GSCRLYSIEDSKLHQLNQVDFQT-------KKKSSTRKITGFQFSPSNPSEVLVTSA-----DSR- 710 (969)
Q Consensus 650 ~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~-------~~~~h~~~It~l~fspd~~~~l~sgs~-----Dg~- 710 (969)
++++.-.+ ..|+.++.. ++......++... ........+-+++++|++ ..|+++.. |+.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCcc
Confidence 77776666 788888876 5543333222211 234456789999999998 44444421 221
Q ss_pred --------EEEE--eCCc---ceEEE--Eeec-----CCCCeEEEEEeCCCCEEEE
Q 002086 711 --------IRIL--DGLD---IVHKF--RGFR-----NTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 711 --------I~Iw--D~~~---~~~~~--~~~~-----~~~~V~sl~fspdg~~LaS 746 (969)
++|+ |... ....+ .... ....+..+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4444 4332 12222 2111 3456778888888887764
No 423
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.01 E-value=39 Score=41.91 Aligned_cols=108 Identities=10% Similarity=0.073 Sum_probs=74.2
Q ss_pred EEEEEecC---CcEEEEEeCCCcEEEEECCC-------C-------------cEEEEeecCCCeEEEEEe--cCCCCEEE
Q 002086 557 VLDLSWSR---SHLLLSSSMDKTVRLWDMET-------K-------------SCLKLFAHNDYVTCIQFN--PMDDDYFI 611 (969)
Q Consensus 557 I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t-------~-------------~~i~~~~h~~~V~sv~fs--p~~~~~L~ 611 (969)
|.-|.... ...|+.+..||.|.+|.+++ . ++...+.....+++++++ . ..++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEE
Confidence 44444433 57899999999999997631 0 011223456789999998 5 567778
Q ss_pred EEECCCeEEEEeCCCc--eEE--EEecCCCCEEEEEEccCC---C---EEEEEeCCCcEEEEEc
Q 002086 612 SGSLDAKVRIWSISDR--LVV--DWTDLHEMVTAACYTPDG---Q---NALIGSHKGSCRLYSI 665 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~--~~~--~~~~~~~~V~sv~fspdg---~---~Lasgs~dg~I~IwDl 665 (969)
+++....|.||-.... +.. ....+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8877788888766442 211 122355779999998753 2 7778899999999888
No 424
>PHA03098 kelch-like protein; Provisional
Probab=84.32 E-value=48 Score=40.12 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=56.4
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEE
Q 002086 564 RSHLLLSSSMD-----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVV 630 (969)
Q Consensus 564 ~~~~L~Sgs~D-----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~ 630 (969)
.+.+++.|+.+ ..+..||..+++-...- .+...-.+++.. ++..++.||.+ ..+..||+.+++-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 35666667654 35778888776543322 111111222322 56677777632 45888998876543
Q ss_pred EEecCCCCE-EEEEEccCCCEEEEEeCCC--------cEEEEEcCCCceee
Q 002086 631 DWTDLHEMV-TAACYTPDGQNALIGSHKG--------SCRLYSIEDSKLHQ 672 (969)
Q Consensus 631 ~~~~~~~~V-~sv~fspdg~~Lasgs~dg--------~I~IwDl~~~~~~~ 672 (969)
.......+. ...+...++..++.|+.++ .+.+||..+.+...
T Consensus 420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 420 KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 322211111 1112223566666766432 38889988776543
No 425
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=83.58 E-value=71 Score=34.64 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=83.3
Q ss_pred CEEEEEecC-CcEEEEEe---CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe-CCCce--
Q 002086 556 DVLDLSWSR-SHLLLSSS---MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS-ISDRL-- 628 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs---~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD-l~~~~-- 628 (969)
.+...++++ ++.++... ....++++... ...........+..-.|++ ++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 577888888 55554444 33344444433 3332222334777788998 677666666666666663 33332
Q ss_pred EEEE--ecCCCCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCcee-eeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 629 VVDW--TDLHEMVTAACYTPDGQNALIGS---HKGSCRLYSIEDSKLH-QLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 629 ~~~~--~~~~~~V~sv~fspdg~~Lasgs---~dg~I~IwDl~~~~~~-~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
.+.. ......|..+.++|||..++.-. .++.|.+--+....-- .................++.+.|.+++ .++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEE
Confidence 2222 22222899999999999888755 3567777655422111 100000111112345689999999987 455
Q ss_pred EEEeC
Q 002086 703 LVTSA 707 (969)
Q Consensus 703 ~sgs~ 707 (969)
+.+..
T Consensus 181 V~~~~ 185 (253)
T PF10647_consen 181 VLGRS 185 (253)
T ss_pred EEeCC
Confidence 55543
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=82.88 E-value=24 Score=40.52 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=55.9
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCC-----cE--E-EEee-----cCCCeEEEEEecCCCCEEEEEECC------
Q 002086 556 DVLDLSWSRSHLLLSSSMDKTVRLWDMETK-----SC--L-KLFA-----HNDYVTCIQFNPMDDDYFISGSLD------ 616 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~-----~~--i-~~~~-----h~~~V~sv~fsp~~~~~L~sgs~D------ 616 (969)
....+++.++. |+.++.....++.|.... +. + ..+. +......++|.| ++.+.++.+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 44677887755 444454443334454321 21 1 1122 234577899999 77766654421
Q ss_pred -------------CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 617 -------------AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 617 -------------g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
|.|.-++..+++...+.........++|+++|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 456666666655443333334567899999998876533
No 427
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.73 E-value=56 Score=34.22 Aligned_cols=137 Identities=14% Similarity=0.109 Sum_probs=78.0
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE---EE
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV---VD 631 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~---~~ 631 (969)
+.++.+.|. +|...++|..+.+++..+...+.=+.++.. +..|+.+....+++.-|..+-.. +.
T Consensus 101 d~~y~LTw~----------egvaf~~d~~t~~~lg~~~y~GeGWgLt~d---~~~LimsdGsatL~frdP~tfa~~~~v~ 167 (262)
T COG3823 101 DYFYQLTWK----------EGVAFKYDADTLEELGRFSYEGEGWGLTSD---DKNLIMSDGSATLQFRDPKTFAELDTVQ 167 (262)
T ss_pred ceEEEEEec----------cceeEEEChHHhhhhcccccCCcceeeecC---CcceEeeCCceEEEecCHHHhhhcceEE
Confidence 455666664 577788999999999999888888888874 44566665556677777654211 11
Q ss_pred EecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee----cccccCCCCCeEEEEEcCCCCceEEE
Q 002086 632 WTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF----QTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 632 ~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~----~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
..... ..++.+.|- +|...|-.=.+..|...+..+++......+.- ......+..-.+.|++.|+...++++
T Consensus 168 VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 168 VTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred EEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 11111 222333332 34444433334445555555555443222210 01113445677889999988666666
Q ss_pred E
Q 002086 705 T 705 (969)
Q Consensus 705 g 705 (969)
|
T Consensus 247 G 247 (262)
T COG3823 247 G 247 (262)
T ss_pred c
Confidence 5
No 428
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.32 E-value=1.5e+02 Score=37.57 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=47.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE-------------EEEEec-CCCCEEEEEEC----------CCeEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT-------------CIQFNP-MDDDYFISGSL----------DAKVR 620 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~-------------sv~fsp-~~~~~L~sgs~----------Dg~I~ 620 (969)
+..++.++.|+.|.-.|.++|+.+..|+..+.|. .+.-.| ..++.+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 4688889999999999999999998776554431 011111 02456666643 68899
Q ss_pred EEeCCCceEEEE
Q 002086 621 IWSISDRLVVDW 632 (969)
Q Consensus 621 IWDl~~~~~~~~ 632 (969)
-+|.++++++-.
T Consensus 340 A~Da~TGkl~W~ 351 (764)
T TIGR03074 340 AFDVNTGALVWA 351 (764)
T ss_pred EEECCCCcEeeE
Confidence 999999987744
No 429
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.25 E-value=23 Score=41.52 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=57.6
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEE---------cCCCceeeeee-eee--cccccCCCCCeEEEEEcCCC--CceEE
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYS---------IEDSKLHQLNQ-VDF--QTKKKSSTRKITGFQFSPSN--PSEVL 703 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwD---------l~~~~~~~~~~-~~~--~~~~~~h~~~It~l~fspd~--~~~l~ 703 (969)
.|..+..++.|..++..+.+|.+.++= +++++....+. +.+ ........-.+..++|+|+. +..++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 478888999999999999999776653 23333221111 111 11112344567778999987 67899
Q ss_pred EEeCCCcEEEEeCCcceEEE
Q 002086 704 VTSADSRIRILDGLDIVHKF 723 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~~~~ 723 (969)
+-+.|..||+|+..+....+
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 99999999999977655544
No 430
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=81.67 E-value=3.7 Score=31.53 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.6
Q ss_pred cCEEEEEEeCCC---CEEEEEeCCCcEEEEeccc
Q 002086 452 GSIWTIKFSLDA---RFLASAGEDRVIHVWEVQE 482 (969)
Q Consensus 452 ~~I~~l~fSpDg---~~LaTgs~DgtVrIWDl~t 482 (969)
|+|.+|+|||+. .+|+.+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999844 4899988889999999984
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=81.19 E-value=41 Score=41.24 Aligned_cols=103 Identities=16% Similarity=0.255 Sum_probs=65.3
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEEcCC-----C--ceeeeee
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYT--PDGQNALIGSHKGSCRLYSIED-----S--KLHQLNQ 675 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fs--pdg~~Lasgs~dg~I~IwDl~~-----~--~~~~~~~ 675 (969)
+...++-+....+.|||.+.+...... ...+.|..+.|. |+|+.+++.+....|.+|.-.. . .......
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 333334444456999999988754433 346889999885 5888898888899999985421 1 1111222
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
+.+. .....+|.+..|.++| .+++|+ ++.+.|+|
T Consensus 121 i~i~---~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 121 IDIS---SHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFD 154 (631)
T ss_pred EEee---cCCCCCccceeEecCC--eEEEEe-CCEEEEEC
Confidence 2111 2223678999999987 444443 56788887
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.93 E-value=12 Score=39.87 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-------e--------cCCCCEEEEEEccCCCEEEEEeCCCc
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-------T--------DLHEMVTAACYTPDGQNALIGSHKGS 659 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-------~--------~~~~~V~sv~fspdg~~Lasgs~dg~ 659 (969)
.++..+.. .+.++++...+|.+++||+.+++.+.. . .....|..+.++.+|.-+++-+ +|.
T Consensus 13 s~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 13 SPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred CceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 34444443 678999999999999999998865421 1 2446688888888887766654 578
Q ss_pred EEEEEcCCCc
Q 002086 660 CRLYSIEDSK 669 (969)
Q Consensus 660 I~IwDl~~~~ 669 (969)
.+.|+..-+.
T Consensus 89 ~y~y~~~L~~ 98 (219)
T PF07569_consen 89 SYSYSPDLGC 98 (219)
T ss_pred EEEeccccce
Confidence 8888876543
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=80.83 E-value=1.1e+02 Score=34.79 Aligned_cols=155 Identities=11% Similarity=0.097 Sum_probs=82.4
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
...+.++.+.+ ++.++ ..+..|.+..-.-..++ -.. .......++.+.+.+++..+++| ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~-~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45788999988 55444 45556655432112222 111 12234678999999999877765 4576653233443321
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe-CCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD-GLDIVHKFRG-FRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD-~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
..... ........+..+.+.+++ .+++++.+|.|..=. ....-..... ..-......+.|..+++.++ .+.
T Consensus 249 ~~~~~----~~~~~~~~l~~v~~~~~~--~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 249 SKPII----PEITNGYGYLDLAYRTPG--EIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred ccccC----CccccccceeeEEEcCCC--CEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 11100 001123457888998865 455666677665422 1111111111 11123466778777766655 455
Q ss_pred CCcEEEEEc
Q 002086 750 DSQVYVWKR 758 (969)
Q Consensus 750 Dg~I~IWdl 758 (969)
.|.|..|+=
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 788887753
No 434
>PLN02153 epithiospecifier protein
Probab=80.73 E-value=1.1e+02 Score=34.70 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCcEEEEEeCC-------CcEEEEECCCCcEEEEeec--CC-----CeEEEEEecCCCCEEEEEECC-----CeEEEEeC
Q 002086 564 RSHLLLSSSMD-------KTVRLWDMETKSCLKLFAH--ND-----YVTCIQFNPMDDDYFISGSLD-----AKVRIWSI 624 (969)
Q Consensus 564 ~~~~L~Sgs~D-------gtV~IWDl~t~~~i~~~~h--~~-----~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl 624 (969)
.+.+++.|+.+ ..+.+||+.+.+-...-.. .. ....+.+ ++.+++.|+.+ ..+.+||+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666666653 3578889887654432211 11 1222333 46677777754 34788998
Q ss_pred CCceEEEEecC-----C-CCEEEEEEccCCCEEEEEeCC-----------CcEEEEEcCCCcee
Q 002086 625 SDRLVVDWTDL-----H-EMVTAACYTPDGQNALIGSHK-----------GSCRLYSIEDSKLH 671 (969)
Q Consensus 625 ~~~~~~~~~~~-----~-~~V~sv~fspdg~~Lasgs~d-----------g~I~IwDl~~~~~~ 671 (969)
.+.+-...... . ......+..-++++++.|+.+ ..+.+||..+.+-.
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 87653332211 1 111222223355666776643 24778888876543
No 435
>PRK10115 protease 2; Provisional
Probab=80.55 E-value=1.7e+02 Score=36.85 Aligned_cols=190 Identities=9% Similarity=0.079 Sum_probs=87.2
Q ss_pred EEEecC-CcEEEEEeC-C-----CcEEEEECCCC--cEEEEeec-CCCeEEEEEecCCCCEEEEEEC---CCeEEEEeCC
Q 002086 559 DLSWSR-SHLLLSSSM-D-----KTVRLWDMETK--SCLKLFAH-NDYVTCIQFNPMDDDYFISGSL---DAKVRIWSIS 625 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~-D-----gtV~IWDl~t~--~~i~~~~h-~~~V~sv~fsp~~~~~L~sgs~---Dg~I~IWDl~ 625 (969)
.++|.+ ++.|+.... + ..|+.+++.++ +-..++.. .....-..+.+.++.+++..+. ++.+.+|+..
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 477876 444444332 2 46888899888 43444432 2223322233326666554433 3568888852
Q ss_pred --CceEEEEecCC-CCEEEEEEccCCCEEEEEeCC--Cc--EEEEEcCC-CceeeeeeeeecccccC-CCCCeEEEEEcC
Q 002086 626 --DRLVVDWTDLH-EMVTAACYTPDGQNALIGSHK--GS--CRLYSIED-SKLHQLNQVDFQTKKKS-STRKITGFQFSP 696 (969)
Q Consensus 626 --~~~~~~~~~~~-~~V~sv~fspdg~~Lasgs~d--g~--I~IwDl~~-~~~~~~~~~~~~~~~~~-h~~~It~l~fsp 696 (969)
.+......... .....+. +.. ..|..-+.. .. |...++.. .+... .... ....|..+.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~--------l~~~~~~~~i~~~~~~~ 325 (686)
T PRK10115 256 LADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEE--------LIPPRENIMLEGFTLFT 325 (686)
T ss_pred CCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeE--------EECCCCCCEEEEEEEEC
Confidence 33322223332 2222222 222 344333322 23 33334432 11100 0012 234677788773
Q ss_pred CCCceEEEEeCCCcEEEE--eCCc-ceEEEEeecCCCCeEEEEEe--CCC-CEEEEEeC---CCcEEEEEcCCC
Q 002086 697 SNPSEVLVTSADSRIRIL--DGLD-IVHKFRGFRNTSSQISAAFN--ADG-KYIISASE---DSQVYVWKREEH 761 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~Iw--D~~~-~~~~~~~~~~~~~V~sl~fs--pdg-~~LaSgs~---Dg~I~IWdl~t~ 761 (969)
+ .++++...++.-+++ +... ....+. ......+..+.++ +++ .++++.+. -+.|+.+|+.++
T Consensus 326 ~--~l~~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 326 D--WLVVEERQRGLTSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred C--EEEEEEEeCCEEEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2 566666777765544 4322 122111 1112223333344 343 35554443 367888888764
No 436
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.16 E-value=31 Score=39.04 Aligned_cols=111 Identities=18% Similarity=0.273 Sum_probs=59.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce-eeeeeeeecccccCCCCCeEEEEEcCC---CCceEEEEeCC-----
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL-HQLNQVDFQTKKKSSTRKITGFQFSPS---NPSEVLVTSAD----- 708 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~-~~~~~~~~~~~~~~h~~~It~l~fspd---~~~~l~sgs~D----- 708 (969)
..+.|+|.|+|++++ +...|.|++++ ..+.. .....+ .............++++|+ +..++++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~--~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADL--PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE---TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceeccc--ccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 467899999987655 56699999999 44443 111111 1223455678899999994 22334443421
Q ss_pred ---CcEEEEeCCc-------ceEEEEee----cCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 709 ---SRIRILDGLD-------IVHKFRGF----RNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 709 ---g~I~IwD~~~-------~~~~~~~~----~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
..|.-|.... ....+... ........|.|.|||.+.++.+..+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 1233332111 11122221 12344567999999987777776554
No 437
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=79.95 E-value=83 Score=40.05 Aligned_cols=128 Identities=9% Similarity=0.088 Sum_probs=75.6
Q ss_pred cCCCCEEEEEEc---c----CCCEEEEEeCCCcEEEEEcCCCce----------eeeeeeeecccccCCCCCeEEEEEcC
Q 002086 634 DLHEMVTAACYT---P----DGQNALIGSHKGSCRLYSIEDSKL----------HQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 634 ~~~~~V~sv~fs---p----dg~~Lasgs~dg~I~IwDl~~~~~----------~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
....+|..|+|. . ...+|++=. ...+.|+...-.+. +....+...........+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 566788888887 2 223555543 44566666221111 00011101111123456788999999
Q ss_pred CCCceEEEEeCCCcEEEEeCCc----ceEEE--E----eec-----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 697 SNPSEVLVTSADSRIRILDGLD----IVHKF--R----GFR-----NTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~----~~~~~--~----~~~-----~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.....|++....|...||++.. ....+ . +.- ....-..+.|.++-..|+.++ ...+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCC
Confidence 8888999999999999999711 11111 1 100 112223788988888888877 457899999886
Q ss_pred Cc
Q 002086 762 RN 763 (969)
Q Consensus 762 ~~ 763 (969)
..
T Consensus 235 ~~ 236 (765)
T PF10214_consen 235 WQ 236 (765)
T ss_pred Cc
Confidence 44
No 438
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=79.76 E-value=1.2e+02 Score=34.88 Aligned_cols=150 Identities=13% Similarity=0.212 Sum_probs=85.7
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEc----cCCCE--EEEEeC-C---CcEEEEEcCC--Cceeee
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYT----PDGQN--ALIGSH-K---GSCRLYSIED--SKLHQL 673 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fs----pdg~~--Lasgs~-d---g~I~IwDl~~--~~~~~~ 673 (969)
...+|+....++-+.+||+...++..+.. +.++.+..- -.|+. |++++. + ..|++|.+.. +.+...
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 45688888899999999999877655432 233333332 13443 444443 2 4799998863 332211
Q ss_pred eeeeecccccCCCCCeEEEEEc--C-CCCceEEEEeCCCcEEEEeCC---cc---eEEEEeecCCCCeEEEEEeCCCCEE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFS--P-SNPSEVLVTSADSRIRILDGL---DI---VHKFRGFRNTSSQISAAFNADGKYI 744 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fs--p-d~~~~l~sgs~Dg~I~IwD~~---~~---~~~~~~~~~~~~V~sl~fspdg~~L 744 (969)
... ..........++.+|+. + ++..++++...+|.+..|.+. +. ....+.+.....+..|.......+|
T Consensus 145 ~~~--~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDP--AAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBT--TC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred CCC--CcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 100 00111223457777764 3 344577778889988777632 21 1233444445678889999988999
Q ss_pred EEEeCCCcEEEEEcC
Q 002086 745 ISASEDSQVYVWKRE 759 (969)
Q Consensus 745 aSgs~Dg~I~IWdl~ 759 (969)
..+-+|--|.-|+.+
T Consensus 223 YvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEETTTEEEEEESS
T ss_pred EEecCccEEEEEecC
Confidence 999998777666665
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.46 E-value=41 Score=32.73 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=68.1
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCc--------eEEEEecCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEEcC
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDR--------LVVDWTDLHEMVTAACYTP-----DGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~--------~~~~~~~~~~~V~sv~fsp-----dg~~Lasgs~dg~I~IwDl~ 666 (969)
-.|.. ....|++++.-|+|.|.+.... ..+.++.....|++++--+ +...|++|+ ...+..||+.
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 35554 4557888888999999987532 3456667777788886655 235666666 5689999998
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCC--CCceEEEEeCCCcEEEEeC
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPS--NPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd--~~~~l~sgs~Dg~I~IwD~ 716 (969)
.+.-... +.-...|.++.+-.- .+.-++..+.+..|.-||.
T Consensus 82 ~N~d~Fy---------ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 82 NNSDLFY---------KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred cCchhhh---------hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 8764322 233456666666432 1245666666677777663
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=78.45 E-value=47 Score=41.18 Aligned_cols=106 Identities=8% Similarity=0.075 Sum_probs=72.2
Q ss_pred CCCEEEEEECCCeEEEEeCCC-------c-------------eEEEEecCCCCEEEEEEc--cCCCEEEEEeCCCcEEEE
Q 002086 606 DDDYFISGSLDAKVRIWSISD-------R-------------LVVDWTDLHEMVTAACYT--PDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~-------~-------------~~~~~~~~~~~V~sv~fs--pdg~~Lasgs~dg~I~Iw 663 (969)
+...|+.|..||.|.+|.+.. . ++.........++.++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456889999999999997621 0 011223344678999998 788899999998888887
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC--Cc---eEEEEeCCCcEEEEeC
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN--PS---EVLVTSADSRIRILDG 716 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~--~~---~l~sgs~Dg~I~IwD~ 716 (969)
-......... ......+...|.+|.|-++. +. .|++++-.|.+.+|+.
T Consensus 193 af~l~~~r~~-----~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFY-----HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccc-----cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6654211000 00012366789999998754 22 6778899999998885
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.98 E-value=1.4e+02 Score=34.68 Aligned_cols=150 Identities=14% Similarity=0.128 Sum_probs=77.4
Q ss_pred EEEEEecCCCCEEEEEECCCeE-EEEeCCCce-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKV-RIWSISDRL-VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I-~IWDl~~~~-~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
..+...+ ++.+++.+. .|.+ +-||--... ..........++.+.+.+++..++++ ..|.+.. ....++......
T Consensus 242 ~~v~~~~-dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSP-DGDYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeEEEcC-CCCEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 3444555 555555444 3433 333332211 11223334568899999998877766 4565443 333332110000
Q ss_pred eeecccc-cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-cc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 676 VDFQTKK-KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL-DI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 676 ~~~~~~~-~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
+.... ......++.+.|.+++ .+++++..|.+...... +. ........-......+.|.++++.+++| .+|.
T Consensus 318 --f~~~~~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 318 --FEEADIKSRGFGILDVGYRSKK--EAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred --eeecccCCCCcceEEEEEcCCC--cEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 00000 1123458899999775 56777788877776522 11 1111112223457788988776666555 5787
Q ss_pred EEEE
Q 002086 753 VYVW 756 (969)
Q Consensus 753 I~IW 756 (969)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7655
No 442
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.63 E-value=1.4 Score=53.88 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=69.3
Q ss_pred EeccCCCCEEEEEecCC--cEEEEEeCCCcEEEEECC--CCcEEE-----Ee-ecCCCeEEEEEecC--CCCEEEEEECC
Q 002086 549 SFIGHLDDVLDLSWSRS--HLLLSSSMDKTVRLWDME--TKSCLK-----LF-AHNDYVTCIQFNPM--DDDYFISGSLD 616 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~~--~~L~Sgs~DgtV~IWDl~--t~~~i~-----~~-~h~~~V~sv~fsp~--~~~~L~sgs~D 616 (969)
.++|..+.|-.+.|-.. ..+. -.-|.+.|||+. .|+... .. .....+.-|.|.|. +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 35677788888888541 1111 334678899875 333221 11 23344455555542 44566666777
Q ss_pred CeEEEEeCCCceEEEEecCCCCEEE-----------EEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 617 AKVRIWSISDRLVVDWTDLHEMVTA-----------ACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~~~~V~s-----------v~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
++|++..+.....-.+..|...+.. -.++|||..|+.++.||.+++|.+.
T Consensus 205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 8888877654322111223332222 2378999999999999999998764
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=76.67 E-value=1.1e+02 Score=32.41 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=69.4
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECC--CCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC------eEEEE---eCC--
Q 002086 559 DLSWSRSHLLLSSSMDKTVRLWDME--TKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA------KVRIW---SIS-- 625 (969)
Q Consensus 559 ~l~fs~~~~L~Sgs~DgtV~IWDl~--t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg------~I~IW---Dl~-- 625 (969)
+++-...+.|+.+.....|.+|++. ..+.+..|..-+.|..+.++. .|++|++--.+. .+|+| ...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3333342455444677789999998 345667778889999999999 899999864332 56665 211
Q ss_pred Cce--EEE---------------------EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 626 DRL--VVD---------------------WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 626 ~~~--~~~---------------------~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
... ... .......+.+++..|-..-|++|+ ++.+.+|.+....
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 011 111 112234677888888655666666 5678888776543
No 444
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.62 E-value=11 Score=40.10 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=46.3
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc-------CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 644 YTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK-------SSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 644 fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~-------~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
+..++.+|++-+.+|.+++||+.+.+..... +.+..... .....|..+.++.+| .-+ +.-.+|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~Pi-V~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPI-VTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCC-CEE-EEEeCCCEEEecc
Confidence 4557889999999999999999998764332 11111111 456678888888766 333 3444577788873
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=75.88 E-value=30 Score=40.48 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=83.0
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC------CCCEEEEEECCCeEEEEeCCC-ceEEEEecCCCCE
Q 002086 567 LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM------DDDYFISGSLDAKVRIWSISD-RLVVDWTDLHEMV 639 (969)
Q Consensus 567 ~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~------~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~~~V 639 (969)
++..|.....++-.|++.|+.+..+.....| -+.|.|. ....-++|-.+..|.-.|.+- +..+........+
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 4556677778888899999999888666666 6777772 122334455555565566643 2222222222222
Q ss_pred EEEEEcc----CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 640 TAACYTP----DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 640 ~sv~fsp----dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
+.-.|+. ...++++++..|-|++||--.-... ....+....|..+..+.+| .++++.+. ..|.+-|
T Consensus 561 tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAK--------talP~lG~aIk~idvta~G-k~ilaTCk-~yllL~d 630 (776)
T COG5167 561 TKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAK--------TALPGLGDAIKHIDVTANG-KHILATCK-NYLLLTD 630 (776)
T ss_pred ccccccccccccCceEEEecCCCceeeehhhcchhh--------hcCcccccceeeeEeecCC-cEEEEeec-ceEEEEe
Confidence 2222322 3459999999999999996543321 2224566778889999888 45554443 3455555
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.78 E-value=0.42 Score=54.83 Aligned_cols=146 Identities=12% Similarity=0.192 Sum_probs=96.5
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeeeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
....|.+ .+.-++.++.+..|..||-...... ..........++|.-++..+++ +-..+.+.+||+.+....+...
T Consensus 38 i~~~w~~-e~~nlavaca~tiv~~YD~agq~~l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~- 114 (615)
T KOG2247|consen 38 IIHRWRP-EGHNLAVACANTIVIYYDKAGQVIL-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES- 114 (615)
T ss_pred ceeeEec-CCCceehhhhhhHHHhhhhhcceec-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc-
Confidence 3446777 4444777788888999996544333 3344455677888888876654 6678899999998765432210
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
. ..+... -+.|++.. ..++.+...+.+.|++..........-.|...++++++.+.+ +.+.++.|..+-+
T Consensus 115 --g---g~~s~s--ll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 115 --G---GTSSKS--LLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred --c---CcchHH--HHhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 0 112222 26788866 678888899999999966544444444467778999999876 4555665655443
No 447
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.51 E-value=85 Score=37.17 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=63.0
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC---C--ceEEEEe-C--
Q 002086 636 HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN---P--SEVLVTS-A-- 707 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~---~--~~l~sgs-~-- 707 (969)
-...+.|+|.|+|++|++--..|.|++++..+........+... ...........|+++|+- . .+|.+.. .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v-~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEI-VNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCce-eccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 35678999999997766655579999998665443222111100 001236789999999874 1 2344432 1
Q ss_pred -------CCcEEEEeCC-------cceEEEEeec--CCCCeEEEEEeCCCCEEEEEeCC
Q 002086 708 -------DSRIRILDGL-------DIVHKFRGFR--NTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 708 -------Dg~I~IwD~~-------~~~~~~~~~~--~~~~V~sl~fspdg~~LaSgs~D 750 (969)
...|.-|... .....+.... ....--.|.|.|||.++++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 2234334321 1122232221 11123468899999877766654
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.12 E-value=1.3e+02 Score=37.94 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=29.6
Q ss_pred cCCCCEEEEEecC----CcEEEEEeCCCcEEEEECCCCc
Q 002086 552 GHLDDVLDLSWSR----SHLLLSSSMDKTVRLWDMETKS 586 (969)
Q Consensus 552 gH~~~I~~l~fs~----~~~L~Sgs~DgtV~IWDl~t~~ 586 (969)
.+...|..+.|+| +..|+.-..|+++|+||+....
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 4567899999998 4799999999999999997543
No 449
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=74.97 E-value=1.8e+02 Score=37.39 Aligned_cols=172 Identities=15% Similarity=0.179 Sum_probs=100.9
Q ss_pred cEEEEECCCCcEEEEeecCC-----CeEEEEEecCCCC-EEEEEEC-----------CCeEEEEeC-CCceEEEE---ec
Q 002086 576 TVRLWDMETKSCLKLFAHND-----YVTCIQFNPMDDD-YFISGSL-----------DAKVRIWSI-SDRLVVDW---TD 634 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~~h~~-----~V~sv~fsp~~~~-~L~sgs~-----------Dg~I~IWDl-~~~~~~~~---~~ 634 (969)
.|++.|..+++.+..+.+.. .|..+.|+..+.. ++++|.. +|.++.|++ +.++.+.+ ..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 48888888888777664433 4667777763333 3333322 344667765 33443333 33
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE-
Q 002086 635 LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI- 713 (969)
Q Consensus 635 ~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I- 713 (969)
....|. ++.|...++++| ....+++||+-..++...... +.-...|+.+++.- ..+++|.....+.+
T Consensus 934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~------k~~p~~Is~iqt~~---~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCEL------KFIPNRISSIQTYG---ARIVVGDIQESVHFV 1001 (1205)
T ss_pred CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhh------ccCceEEEEEeecc---eEEEEeeccceEEEE
Confidence 334444 455655565555 456899999988776543322 22456678888764 57777766655554
Q ss_pred -EeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 714 -LDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 714 -wD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
|+.. +....+..-.-+..|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus 1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 4422 233334333344556666554 555788888888888877654
No 450
>PLN02193 nitrile-specifier protein
Probab=74.62 E-value=1.9e+02 Score=34.42 Aligned_cols=146 Identities=12% Similarity=0.057 Sum_probs=70.5
Q ss_pred CcEEEEEeCC-------CcEEEEECCCCcEEEEee-----cCCCe-EEEEEecCCCCEEEEEECC-----CeEEEEeCCC
Q 002086 565 SHLLLSSSMD-------KTVRLWDMETKSCLKLFA-----HNDYV-TCIQFNPMDDDYFISGSLD-----AKVRIWSISD 626 (969)
Q Consensus 565 ~~~L~Sgs~D-------gtV~IWDl~t~~~i~~~~-----h~~~V-~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~ 626 (969)
+.+++.|+.+ ..+.+||+.+.+-...-. ..... .+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCC
Confidence 4566666643 347788888765432211 10001 122222 45666777765 3588899887
Q ss_pred ceEEEEecC---C--CCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 627 RLVVDWTDL---H--EMVTAACYTPDGQNALIGSHKG-----SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 627 ~~~~~~~~~---~--~~V~sv~fspdg~~Lasgs~dg-----~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.+-...... . ..-.+++ .-++++++.|+.++ .+..||+.+.+....... ............+.+
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~~~~R~~~~~~~~-- 327 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTP---GDSFSIRGGAGLEVV-- 327 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCC---CCCCCCCCCcEEEEE--
Confidence 654433221 1 1111222 23556666776543 467788877654322110 000011111112222
Q ss_pred CCCceEEEEeCC----CcEEEEeCCcc
Q 002086 697 SNPSEVLVTSAD----SRIRILDGLDI 719 (969)
Q Consensus 697 d~~~~l~sgs~D----g~I~IwD~~~~ 719 (969)
++ ..++.++.+ ..+.+||..+.
T Consensus 328 ~g-kiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 328 QG-KVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred CC-cEEEEECCCCCccCceEEEECCCC
Confidence 23 566666655 45888886643
No 451
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=74.36 E-value=8.8 Score=29.52 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=26.7
Q ss_pred CCeEEEEEecCCC--CEEEEEECCCeEEEEeCCC
Q 002086 595 DYVTCIQFNPMDD--DYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 595 ~~V~sv~fsp~~~--~~L~sgs~Dg~I~IWDl~~ 626 (969)
+.|.++.|+|..+ ++|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998445 6888888889999999985
No 452
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=73.83 E-value=1.5e+02 Score=32.97 Aligned_cols=203 Identities=11% Similarity=0.048 Sum_probs=94.5
Q ss_pred CCCCEEEEEecC-CcE-EEEEeCCCcEEEEECCCCcE----------------EEEeecCCCeEEEEEecCCCCEEEEEE
Q 002086 553 HLDDVLDLSWSR-SHL-LLSSSMDKTVRLWDMETKSC----------------LKLFAHNDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~-L~Sgs~DgtV~IWDl~t~~~----------------i~~~~h~~~V~sv~fsp~~~~~L~sgs 614 (969)
+...|+++...+ .+. ++-++....++++++..-.. ...++|.....-..+.......++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 456788888887 343 44444455599999842221 223355554444444331223455666
Q ss_pred CCCeEEEEeCCCc--eEEEEe-------cCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 615 LDAKVRIWSISDR--LVVDWT-------DLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 615 ~Dg~I~IWDl~~~--~~~~~~-------~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
...+|.++..... +..... ....++..+..+++ ...+++|+..+...++++... ..............
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~-~~~~~d~sl~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHES-LVSKEDLSLPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeec-cccccccccccccc
Confidence 6677777654332 111111 11223334433433 457888887644555555321 00000000000001
Q ss_pred CCC-CCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 684 SST-RKITGFQFSPSNPSEVLVTSADSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 684 ~h~-~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
... .++..+.... + .++.+-.+..+++=... ....... ..-.....++++. ..||+.-.. ..|.|+++.++
T Consensus 200 ~~~~~p~~i~~l~~-~--e~Llc~~~~~v~Vn~~G~~~~r~~~-l~w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~ 272 (302)
T smart00036 200 ETSLKPISVVQVPR-D--EFLLCYDEFGVFVNLYGKRRSRNPI-LHWEFMPESFAYH--SPYLLAFHD-NGIEIRSIKTG 272 (302)
T ss_pred ccccCceEEEEECC-C--eEEEEECcEEEEEeCCCCccccceE-EEcCCcccEEEEE--CCEEEEEcC-CcEEEEECCCC
Confidence 111 3444444433 2 45555555444442222 1111111 1112234566665 367777764 45999999986
Q ss_pred Cc
Q 002086 762 RN 763 (969)
Q Consensus 762 ~~ 763 (969)
+.
T Consensus 273 ~l 274 (302)
T smart00036 273 EL 274 (302)
T ss_pred ce
Confidence 43
No 453
>PHA02790 Kelch-like protein; Provisional
Probab=70.39 E-value=2.4e+02 Score=33.71 Aligned_cols=102 Identities=7% Similarity=0.051 Sum_probs=53.2
Q ss_pred CcEEEEEeCC--CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCC---eEEEEeCCCceEEEEecCCC
Q 002086 565 SHLLLSSSMD--KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDA---KVRIWSISDRLVVDWTDLHE 637 (969)
Q Consensus 565 ~~~L~Sgs~D--gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg---~I~IWDl~~~~~~~~~~~~~ 637 (969)
+...+.|+.+ .++..||..+++-...- .....-.+++.. ++...+.||.++ .+..||..+..-........
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 5566666653 45788887765443322 211111122222 577777777654 46788887764332211111
Q ss_pred CE-EEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 638 MV-TAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 638 ~V-~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+. ...+..-+++..+.| |.+.+||..+++..
T Consensus 397 ~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 397 PHYKSCALVFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred ccccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence 11 111223356666666 35778998776654
No 454
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=70.28 E-value=1.9e+02 Score=32.39 Aligned_cols=106 Identities=9% Similarity=0.166 Sum_probs=55.9
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCcE---EEEe---ecCCCeEEEEEecCCCCEEEEEEC-----CCeEEEEeCCCc
Q 002086 564 RSHLLLSSSMD-----KTVRLWDMETKSC---LKLF---AHNDYVTCIQFNPMDDDYFISGSL-----DAKVRIWSISDR 627 (969)
Q Consensus 564 ~~~~L~Sgs~D-----gtV~IWDl~t~~~---i~~~---~h~~~V~sv~fsp~~~~~L~sgs~-----Dg~I~IWDl~~~ 627 (969)
.+.+++.|+.+ ..+..+|+.+... .... .....-.+++.. ++.+++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 35666667654 3566777776653 1222 111111222332 4666677664 235888998876
Q ss_pred eEEEEecCC--CCEEEEEEccCCCEEEEEeCCC----cEEEEEcCCCcee
Q 002086 628 LVVDWTDLH--EMVTAACYTPDGQNALIGSHKG----SCRLYSIEDSKLH 671 (969)
Q Consensus 628 ~~~~~~~~~--~~V~sv~fspdg~~Lasgs~dg----~I~IwDl~~~~~~ 671 (969)
+-....... ......+...++++.+.|+.++ .+.+||..+.+..
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 543332111 1122233334667777777654 3568888876643
No 455
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=69.66 E-value=1.9e+02 Score=32.25 Aligned_cols=206 Identities=11% Similarity=0.110 Sum_probs=111.0
Q ss_pred CEEEEEecC-CcEEEEEeCCCcEEEEECC------CCc-EEEEee------cCCCeEEEEEecCC-----------CCEE
Q 002086 556 DVLDLSWSR-SHLLLSSSMDKTVRLWDME------TKS-CLKLFA------HNDYVTCIQFNPMD-----------DDYF 610 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~------t~~-~i~~~~------h~~~V~sv~fsp~~-----------~~~L 610 (969)
.-+.|+++| +.+-++...-+...+||.. ..+ ++..+. .....+.+.|+... ...|
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 357899999 6666666778899999986 222 222321 23568888887521 1236
Q ss_pred EEEECCCeEEEEeCCCce------EEEEec-CCCCE-EEEEEcc--CCCEEEE-EeCCCcEEEEEcCCCceeeeeeee--
Q 002086 611 ISGSLDAKVRIWSISDRL------VVDWTD-LHEMV-TAACYTP--DGQNALI-GSHKGSCRLYSIEDSKLHQLNQVD-- 677 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~~------~~~~~~-~~~~V-~sv~fsp--dg~~Las-gs~dg~I~IwDl~~~~~~~~~~~~-- 677 (969)
+.+++||+|.-|...-+. .+.... ....| ..+++.. .+.+|.. --..++|.+||-.-.+......+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 888999999999853222 122211 12333 3445443 3455544 446889999986544321100000
Q ss_pred --------ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEEeecCCCCeEEEEEeC------CCC
Q 002086 678 --------FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFRGFRNTSSQISAAFNA------DGK 742 (969)
Q Consensus 678 --------~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fsp------dg~ 742 (969)
+.....+..-.|+...-.++. ..=+.+..-|.|-+||... .++.+........-..|+..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 000000001111111112222 2223334456788888553 444443333333345566644 567
Q ss_pred EEEEEeCCCcEEEEEcCCCC
Q 002086 743 YIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 743 ~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+|+---.||+|..||..+++
T Consensus 263 lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eEEeecCCceeEEecCCCCc
Confidence 78877779999999998754
No 456
>PRK13684 Ycf48-like protein; Provisional
Probab=69.34 E-value=2e+02 Score=32.49 Aligned_cols=151 Identities=11% Similarity=0.030 Sum_probs=84.3
Q ss_pred CCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE
Q 002086 554 LDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 554 ~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
...+.++.+.++..++..+..|.+..-.-..++..... .-...++++.+.+ ++..+++ +..|.+++=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~v-g~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWML-ARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEE-ecCCEEEEccCCCCCccc
Confidence 35678888888666666666676553211223323222 3456789999998 6666555 456766533344443322
Q ss_pred Eec-----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 632 WTD-----LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 632 ~~~-----~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
... ....+..+.+.+++..+++| .+|.+.. ....++.-.... ....-....+.+.|..++ ..++.+
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~G 320 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDP-----VGEEVPSNFYKIVFLDPE--KGFVLG 320 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECC-----cCCCCCcceEEEEEeCCC--ceEEEC
Confidence 111 12347889999987755544 5665543 444433211110 001112357777777554 556677
Q ss_pred CCCcEEEEe
Q 002086 707 ADSRIRILD 715 (969)
Q Consensus 707 ~Dg~I~IwD 715 (969)
..|.|.-|+
T Consensus 321 ~~G~il~~~ 329 (334)
T PRK13684 321 QRGVLLRYV 329 (334)
T ss_pred CCceEEEec
Confidence 788887776
No 457
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.20 E-value=2.3e+02 Score=33.03 Aligned_cols=146 Identities=10% Similarity=0.061 Sum_probs=77.2
Q ss_pred EEEEEecCCcEEEEEeCCCcEE-EEECCCCc-EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-----E
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVR-LWDMETKS-CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-----V 629 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~-IWDl~t~~-~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-----~ 629 (969)
...+..+++..++..+..|.+. -||-.... ..........++++.|.+ ++..++++ .+|.+.. ....++ -
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 4445555644444444445433 34432211 112234456789999987 66666655 5666543 333332 1
Q ss_pred EEEec---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 630 VDWTD---LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 630 ~~~~~---~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
..... ....++.+.|.+++..+++| ..|.+.... ..++.-... .....-...++.+.|.+++ ...+.+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~-----~~~~~~~~~ly~v~f~~~~--~g~~~G 388 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRD-----KGADNIAANLYSVKFFDDK--KGFVLG 388 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEc-----cccCCCCcceeEEEEcCCC--ceEEEe
Confidence 12111 12358899999887655554 567666553 333321111 0002234567889987764 566667
Q ss_pred CCCcEEEE
Q 002086 707 ADSRIRIL 714 (969)
Q Consensus 707 ~Dg~I~Iw 714 (969)
.+|.|.-|
T Consensus 389 ~~G~il~~ 396 (398)
T PLN00033 389 NDGVLLRY 396 (398)
T ss_pred CCcEEEEe
Confidence 77877655
No 458
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=68.39 E-value=2.1e+02 Score=32.27 Aligned_cols=41 Identities=12% Similarity=-0.023 Sum_probs=20.5
Q ss_pred CeEEEEeCCCceEEEEecCCC--CEEEEEEccCCCEEEEEeCC
Q 002086 617 AKVRIWSISDRLVVDWTDLHE--MVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~~~--~V~sv~fspdg~~Lasgs~d 657 (969)
..|.+||..+.+-........ .........++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 458888987765333222111 11112223356777777653
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.65 E-value=63 Score=42.21 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.2
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 738 NADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 738 spdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
+.++..++++..||.+.+||+..++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998543
No 460
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=65.75 E-value=2.9e+02 Score=32.84 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE------Ee--cCCCCEEEEEEccCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD------WT--DLHEMVTAACYTPDG 648 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~------~~--~~~~~V~sv~fspdg 648 (969)
-...+.|+|.| ++.+|++--..|.|++++..++.... .. ........|+++|+-
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45678899999 77777665546999999876543211 11 124668999999874
No 461
>PRK05560 DNA gyrase subunit A; Validated
Probab=65.09 E-value=4e+02 Score=34.24 Aligned_cols=195 Identities=12% Similarity=0.105 Sum_probs=99.4
Q ss_pred CCcEEEEEeCCCcEEEEEC---CC------CcEEE---EeecC-CCeEEEEEecC-CCCEEEEEECCCeEEEEeCCC---
Q 002086 564 RSHLLLSSSMDKTVRLWDM---ET------KSCLK---LFAHN-DYVTCIQFNPM-DDDYFISGSLDAKVRIWSISD--- 626 (969)
Q Consensus 564 ~~~~L~Sgs~DgtV~IWDl---~t------~~~i~---~~~h~-~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWDl~~--- 626 (969)
..+.|+..+..|.+....+ .. |..+. .+... .-|.++.+... +...++..+.+|.++--++..
T Consensus 547 t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~ 626 (805)
T PRK05560 547 THDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSN 626 (805)
T ss_pred CCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 3566666666777666544 22 22221 12222 33445555421 457899999999998776632
Q ss_pred ----ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--eeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 627 ----RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL--NQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 627 ----~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~--~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
+.....+...+.+..+........++..+..|.+..+.+..-..... ..... ... .....|..+....+...
T Consensus 627 ~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~-i~L-~~~E~Vv~~~~v~~~~~ 704 (805)
T PRK05560 627 IRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRG-IKL-REGDEVVSMDVVREDSQ 704 (805)
T ss_pred cccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCccc-ccC-CCCCEEEEEEEEcCCCc
Confidence 11111122334455555555566788888888887776643211100 00000 011 12233444433332324
Q ss_pred eEEEEeCCCcEEEEeCCc---------ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 701 EVLVTSADSRIRILDGLD---------IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~---------~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.++..+..|.++...... ....+........+..+....+...++..+.+|.+..+++.+
T Consensus 705 ~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 705 EILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred EEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH
Confidence 678888888888776221 222222222223344433333444566667788888877764
No 462
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=62.83 E-value=1 Score=51.82 Aligned_cols=140 Identities=11% Similarity=0.215 Sum_probs=94.0
Q ss_pred EEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCC-EEEEEECCCeEEEEeCCCceEEEEec-C
Q 002086 559 DLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD-YFISGSLDAKVRIWSISDRLVVDWTD-L 635 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~~~~~-~ 635 (969)
...|-+ +..++.++.+..|..||-... .+....-.+....++|.. +++ .++.+-..+.+.+||+.+....++.. .
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n~tg~aldm~wDk-egdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELNPTGKALDMAWDK-EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc-eecccCCchhHhhhhhcc-ccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 445555 666888888999999986543 333334455666778877 554 45556778899999998753222111 1
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 636 HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
...-.-+.|++....++.|...|.+.||+..+.+.... ...|...++++++.+.+ +.+.++.|..
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv--------~Gkh~RRgtq~av~lEd--~vil~dcd~~ 181 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV--------MGKHQRRGTQIAVTLED--YVILCDCDNT 181 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhh--------hcccccceeEEEecccc--eeeecCcHHH
Confidence 11122278889889999999999999999877654322 13488899999999876 5555554443
No 463
>PLN02153 epithiospecifier protein
Probab=62.64 E-value=2.7e+02 Score=31.43 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=53.8
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCcEEEEeec-------CCCeEEEEEecCCCCEEEEEECC-----------CeEEE
Q 002086 565 SHLLLSSSMD-----KTVRLWDMETKSCLKLFAH-------NDYVTCIQFNPMDDDYFISGSLD-----------AKVRI 621 (969)
Q Consensus 565 ~~~L~Sgs~D-----gtV~IWDl~t~~~i~~~~h-------~~~V~sv~fsp~~~~~L~sgs~D-----------g~I~I 621 (969)
+.+++.|+.+ ..|.+||..+.+-...-.. ...-.+++.. ++.+++.|+.+ ..|.+
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEE
Confidence 4566666643 3578888887654332110 1111222332 45667777654 24778
Q ss_pred EeCCCceEEEEecCC-----CCEEEEEEccCCCEEEEEeCC-------------CcEEEEEcCCCceee
Q 002086 622 WSISDRLVVDWTDLH-----EMVTAACYTPDGQNALIGSHK-------------GSCRLYSIEDSKLHQ 672 (969)
Q Consensus 622 WDl~~~~~~~~~~~~-----~~V~sv~fspdg~~Lasgs~d-------------g~I~IwDl~~~~~~~ 672 (969)
||..+.+=..+.... ..-.+++. -+++.++.|+.+ ..+.+||+.+.+...
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE 231 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence 888876533322111 11112222 355666655432 468889988776543
No 464
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=61.86 E-value=1.1e+02 Score=34.07 Aligned_cols=104 Identities=10% Similarity=0.159 Sum_probs=67.8
Q ss_pred EEECCCCcEEEE---eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 579 LWDMETKSCLKL---FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 579 IWDl~t~~~i~~---~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
++|+.+++.+.. +.|.- .|+ ++.+.++-+..|.|..+|..+|+........+....++|. |.++++|.
T Consensus 189 vidv~s~evl~~GLsmPhSP-----RWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 189 VIDIPSGEVVASGLSMPHSP-----RWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred EEEeCCCCEEEcCccCCcCC-----cEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence 467777776642 23333 566 5888888888999999999888776666666778888888 88887765
Q ss_pred CC--------------------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 656 HK--------------------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 656 ~d--------------------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
.. .-|.+.|++++.......+ .+....+..+++-|.
T Consensus 260 Sk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~f------eg~v~EifdV~vLPg 315 (335)
T TIGR03032 260 SKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRF------EGVIEEIYDVAVLPG 315 (335)
T ss_pred ccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEe------CCceeEEEEEEEecC
Confidence 42 2355566666665444332 333445555555553
No 465
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=60.28 E-value=2.6e+02 Score=31.15 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=41.2
Q ss_pred CEEEEEECCCeEEEEeCCC--ceEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCc
Q 002086 608 DYFISGSLDAKVRIWSISD--RLVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSK 669 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~--~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~ 669 (969)
.+|+.|..+| |.+.++.. +.+.... ....|+++...+.-+.|++-+ ....+++|++....
T Consensus 14 ~~lL~GTe~G-ly~~~~~~~~~~~~kl~-~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~ 76 (302)
T smart00036 14 KWLLVGTEEG-LYVLNISDQPGTLEKLI-GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALV 76 (302)
T ss_pred cEEEEEeCCc-eEEEEcccCCCCeEEec-CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhh
Confidence 5899999888 55556654 3344443 445799999999877766644 44459999985443
No 466
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=58.69 E-value=5.1e+02 Score=33.39 Aligned_cols=159 Identities=11% Similarity=0.181 Sum_probs=92.7
Q ss_pred eccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC--CCC---EEEEEECCCeEEEE
Q 002086 550 FIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM--DDD---YFISGSLDAKVRIW 622 (969)
Q Consensus 550 l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~--~~~---~L~sgs~Dg~I~IW 622 (969)
+....+.....++.....++.++.++.+...++..+...... .....|.|+.++|. +.+ +++.|.++..+.+.
T Consensus 484 W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 484 WRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred ccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence 333333334444444557777777788888887766633333 45678999999984 233 78888887765544
Q ss_pred eC-CCceEEEEe--c---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 623 SI-SDRLVVDWT--D---LHEMVTAACYTPDGQNALIGSHKGSCRLYSIE--DSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 623 Dl-~~~~~~~~~--~---~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~--~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
-. .+...+... . ....|.-.+|-.+..+|+++..||.+..|-+. ++....... ..-...++.--.|
T Consensus 564 ~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk------~~lGt~P~~Lr~f 637 (1096)
T KOG1897|consen 564 TFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK------VTLGTQPISLRTF 637 (1096)
T ss_pred EECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc------cccCCCCcEEEEE
Confidence 33 333333222 1 22445566666678899999999998776554 443322211 1223456666667
Q ss_pred cCCCCceEEEEeCCCcEEEEe
Q 002086 695 SPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I~IwD 715 (969)
+..+...+++. .|.-..+|.
T Consensus 638 ~sk~~t~vfa~-sdrP~viY~ 657 (1096)
T KOG1897|consen 638 SSKSRTAVFAL-SDRPTVIYS 657 (1096)
T ss_pred eeCCceEEEEe-CCCCEEEEe
Confidence 76664444444 455444454
No 467
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.34 E-value=2.5e+02 Score=34.95 Aligned_cols=47 Identities=17% Similarity=0.406 Sum_probs=39.0
Q ss_pred eeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCC
Q 002086 538 TVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMET 584 (969)
Q Consensus 538 ~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t 584 (969)
.+|...+.++..+.-....+..+.|+.+..|+....+|++++|++..
T Consensus 67 ~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 67 RIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred EEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecch
Confidence 56677777776666555689999999999999999999999999864
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.29 E-value=1.8e+02 Score=33.92 Aligned_cols=106 Identities=10% Similarity=0.123 Sum_probs=64.6
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 635 LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 635 ~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
..++|.++.|++|.+.+|+--.+++|.+++....+.... ...+.+.....|.++.|... ..++..+..| +-+|
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~----~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y 137 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE----YTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFY 137 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH----HHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEE
Confidence 346899999999999999999999999999855443222 12222445566899999875 3555544333 4444
Q ss_pred eCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEE
Q 002086 715 DGLDIVHKFRG-FRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 715 D~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSg 747 (969)
........++. ..+...|.-..|+++.+.++-+
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 42221111111 1234456666777776654433
No 469
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=58.05 E-value=5.1e+02 Score=33.22 Aligned_cols=196 Identities=10% Similarity=0.064 Sum_probs=100.5
Q ss_pred CCcEEEEEeCCCcEEEEECCC---------CcEE---EEeec-CCCeEEEEEec-CCCCEEEEEECCCeEEEEeCCCce-
Q 002086 564 RSHLLLSSSMDKTVRLWDMET---------KSCL---KLFAH-NDYVTCIQFNP-MDDDYFISGSLDAKVRIWSISDRL- 628 (969)
Q Consensus 564 ~~~~L~Sgs~DgtV~IWDl~t---------~~~i---~~~~h-~~~V~sv~fsp-~~~~~L~sgs~Dg~I~IWDl~~~~- 628 (969)
..+.|+..+..|.+....... |..+ ..+.. ..-|.++.+.. .++.+++..+.+|.++-.++..-.
T Consensus 545 t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~ 624 (800)
T TIGR01063 545 THDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSN 624 (800)
T ss_pred CCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 356666677777766655421 2221 11222 22344454322 145689999999999988764321
Q ss_pred ------EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 629 ------VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 629 ------~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
....+...+.+..+........++..+..|.+..+.+..-..............-.....|.++....++ ..+
T Consensus 625 ~~r~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~-~~l 703 (800)
T TIGR01063 625 IRSNGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEE-SYL 703 (800)
T ss_pred hccCCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccc-cEE
Confidence 1111122344555555555567888888887777665432111000000000001123345554444333 468
Q ss_pred EEEeCCCcEEEEeCCc---------ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 703 LVTSADSRIRILDGLD---------IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~---------~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+..+..|.++...... ....+........+..+....+...++..+.+|.+..++..+
T Consensus 704 l~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 704 LIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred EEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhh
Confidence 8888889888776321 222222222223444444444445566777788888877764
No 470
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=57.88 E-value=3.4e+02 Score=31.13 Aligned_cols=38 Identities=13% Similarity=-0.054 Sum_probs=19.4
Q ss_pred eEEEEeCCCceEEEEecCCC-C--EEEEEEccCCCEEEEEeC
Q 002086 618 KVRIWSISDRLVVDWTDLHE-M--VTAACYTPDGQNALIGSH 656 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~~~-~--V~sv~fspdg~~Lasgs~ 656 (969)
.|.+||..+..-...-.... . -.++... ++++++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 58889988765443222221 1 1233332 5566666664
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=57.15 E-value=1.7e+02 Score=32.38 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEE------CCCeEEEEeCCCceEEEEec-----CCCCEEE
Q 002086 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGS------LDAKVRIWSISDRLVVDWTD-----LHEMVTA 641 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs------~Dg~I~IWDl~~~~~~~~~~-----~~~~V~s 641 (969)
-..|++||..+.+-...- +-.+.|++|.|.. +..+++.|. ....+..||+.+.....+.. ..++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 356899999887766554 4678899999985 555565553 35568899998886544444 2477888
Q ss_pred EEEcc-CC-CEEEEEe-CCCcEEEEEcCC
Q 002086 642 ACYTP-DG-QNALIGS-HKGSCRLYSIED 667 (969)
Q Consensus 642 v~fsp-dg-~~Lasgs-~dg~I~IwDl~~ 667 (969)
+.+.. ++ +.++.|. .+|...|...+.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcC
Confidence 87743 33 3444444 444444433333
No 472
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=55.18 E-value=2.1e+02 Score=33.43 Aligned_cols=31 Identities=13% Similarity=0.373 Sum_probs=25.1
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..|..+...+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899999889999999999999999975
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=55.08 E-value=3.5e+02 Score=30.43 Aligned_cols=148 Identities=11% Similarity=0.187 Sum_probs=84.8
Q ss_pred CCCEEEEEecC-CcEEEEEeCCCc------EEEEECCC--C--cEEEE------eecCC--------CeEEEEEecCCCC
Q 002086 554 LDDVLDLSWSR-SHLLLSSSMDKT------VRLWDMET--K--SCLKL------FAHND--------YVTCIQFNPMDDD 608 (969)
Q Consensus 554 ~~~I~~l~fs~-~~~L~Sgs~Dgt------V~IWDl~t--~--~~i~~------~~h~~--------~V~sv~fsp~~~~ 608 (969)
-+.+..|.+.+ +..+++.+.+|. +..+++.. + ..+.. ..-.+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 35678889985 677888888888 66666554 1 11111 11111 345788855 788
Q ss_pred EEEEEECC------CeEEEEeCCCceEEEE----------------ecCCCCEEEEEEccCCCEEEEEeCC-----C--c
Q 002086 609 YFISGSLD------AKVRIWSISDRLVVDW----------------TDLHEMVTAACYTPDGQNALIGSHK-----G--S 659 (969)
Q Consensus 609 ~L~sgs~D------g~I~IWDl~~~~~~~~----------------~~~~~~V~sv~fspdg~~Lasgs~d-----g--~ 659 (969)
++++--.+ ..|+.++.. +.+... ...+...-.++++|+|+.|+++.+. + .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877667 788888876 433211 1233558899999999977665432 2 1
Q ss_pred -------EEEE--EcCC-Cceeeeeeeeecc-cccCCCCCeEEEEEcCCCCceEEE
Q 002086 660 -------CRLY--SIED-SKLHQLNQVDFQT-KKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 660 -------I~Iw--Dl~~-~~~~~~~~~~~~~-~~~~h~~~It~l~fspd~~~~l~s 704 (969)
++|+ |..+ +.......+.+.. ........|+.+.+-+++ .+|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEE
Confidence 4554 4443 2222222211110 001156778888888887 44443
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=54.90 E-value=5.6e+02 Score=32.69 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=98.5
Q ss_pred cCCCCEEEEEec---C--C--cEEEEEeCCCcEEEEECCCC---------------cEEEEee----cCCCeEEEEEecC
Q 002086 552 GHLDDVLDLSWS---R--S--HLLLSSSMDKTVRLWDMETK---------------SCLKLFA----HNDYVTCIQFNPM 605 (969)
Q Consensus 552 gH~~~I~~l~fs---~--~--~~L~Sgs~DgtV~IWDl~t~---------------~~i~~~~----h~~~V~sv~fsp~ 605 (969)
.-..+|..|+|. . + ..++..-....+.|+...-. .++..+. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 355678888887 2 1 13445555566666662111 1222332 2347889999998
Q ss_pred CCCEEEEEECCCeEEEEeCCCc-----eEEEEe-cC----------CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 606 DDDYFISGSLDAKVRIWSISDR-----LVVDWT-DL----------HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~-----~~~~~~-~~----------~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
+...||.....|...||++... ...... .. ......+.|.++...|++++ ...+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 8889999999999999999211 111111 11 12345788988878888776 4578899998876
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
.... .........|..+.-+|.++.++++-+. ..|...+...
T Consensus 236 ~~~~------l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEY------LVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred ccch------hccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 5332 1113456779999999885545444433 5666666554
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=54.79 E-value=1e+02 Score=33.23 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=52.8
Q ss_pred EEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECC---CeEEEEeCCC----ceEEE---EecCCCCEEEEEEcc
Q 002086 578 RLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLD---AKVRIWSISD----RLVVD---WTDLHEMVTAACYTP 646 (969)
Q Consensus 578 ~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~D---g~I~IWDl~~----~~~~~---~~~~~~~V~sv~fsp 646 (969)
.+||+.+++..... ...-.+.+-.+.+ +|.+|++|+.. ..+++++... ..... ......+-..+..-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 47788777665433 3333444456777 89999888752 3478888654 11111 123334555677788
Q ss_pred CCCEEEEEeCCC-cEEEEEc
Q 002086 647 DGQNALIGSHKG-SCRLYSI 665 (969)
Q Consensus 647 dg~~Lasgs~dg-~I~IwDl 665 (969)
||+.|++|+... +..+|.-
T Consensus 128 DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCEEEEeCcCCCcccccCC
Confidence 999999988764 3444443
No 476
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.51 E-value=5.6e+02 Score=33.77 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=29.0
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEE
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMS 487 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~ 487 (969)
.....++|+|.-.+||.+...|.|+++-...-+...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~ 71 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVG 71 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEe
Confidence 355678999999999999999999999876544443
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.24 E-value=1e+02 Score=40.31 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=81.6
Q ss_pred EeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC-------CCCEEEEEECCCeEEEEeCC----CceE------EEE
Q 002086 571 SSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM-------DDDYFISGSLDAKVRIWSIS----DRLV------VDW 632 (969)
Q Consensus 571 gs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~-------~~~~L~sgs~Dg~I~IWDl~----~~~~------~~~ 632 (969)
.+.|+.+.+|++.++.....+ +....|..|..-.. .=++++....--.|.++-+. ++.. ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 456889999999996665555 44555555543211 22334444444456655442 1111 112
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEE--EEcCCC---c-eeeeee--------ee-ecccccCCCCCeEEEEEcCC
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRL--YSIEDS---K-LHQLNQ--------VD-FQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~I--wDl~~~---~-~~~~~~--------~~-~~~~~~~h~~~It~l~fspd 697 (969)
-...-.|+|+....+|+.|++|- ||.|+= |....+ + +..... ++ +......+..+|..+.....
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 22245688999888887766665 553331 222211 0 100000 00 11111356779999999876
Q ss_pred CCceEEEEeCCCcEEEEeCCc
Q 002086 698 NPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
- ..+.+-+..++|.+|++..
T Consensus 254 R-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 R-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred c-ceeeeeccCceEEEEEccC
Confidence 5 7888889999999999543
No 478
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=53.22 E-value=4.2e+02 Score=30.70 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=83.4
Q ss_pred CcEEEEECC--CCcEEEEee--------cCCCeEEEEEe--cCCCC-EEEEEECCCeEEEEeCC---Cc----eEEEEec
Q 002086 575 KTVRLWDME--TKSCLKLFA--------HNDYVTCIQFN--PMDDD-YFISGSLDAKVRIWSIS---DR----LVVDWTD 634 (969)
Q Consensus 575 gtV~IWDl~--t~~~i~~~~--------h~~~V~sv~fs--p~~~~-~L~sgs~Dg~I~IWDl~---~~----~~~~~~~ 634 (969)
.+|++|.+. ++. +..+. ....++.+|+- +.++. +++....+|.+..|-+. .+ +++..+.
T Consensus 127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 468898665 343 33321 12346777764 32343 66778889998888774 23 3566666
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc--CCCCceEEEEe-CCCcE
Q 002086 635 LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS--PSNPSEVLVTS-ADSRI 711 (969)
Q Consensus 635 ~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs--pd~~~~l~sgs-~Dg~I 711 (969)
....+..|........|.++-++--|.-|+.+...-.....+.. .........|-.|++- .++..+|++++ .+++.
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~-~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVAS-ADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEE-BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeec-ccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 77789999999988899999999989888887443221111111 1112345677777765 34444555554 56789
Q ss_pred EEEeCC
Q 002086 712 RILDGL 717 (969)
Q Consensus 712 ~IwD~~ 717 (969)
.||+..
T Consensus 285 ~Vy~r~ 290 (381)
T PF02333_consen 285 AVYDRE 290 (381)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 999954
No 479
>PLN02193 nitrile-specifier protein
Probab=53.06 E-value=4.6e+02 Score=31.19 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=56.2
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCcEEEEeec-----CCCeEEEEEecCCCCEEEEEECCC-----eEEEEeCCCceE
Q 002086 565 SHLLLSSSMD-----KTVRLWDMETKSCLKLFAH-----NDYVTCIQFNPMDDDYFISGSLDA-----KVRIWSISDRLV 629 (969)
Q Consensus 565 ~~~L~Sgs~D-----gtV~IWDl~t~~~i~~~~h-----~~~V~sv~fsp~~~~~L~sgs~Dg-----~I~IWDl~~~~~ 629 (969)
+.+++.|+.+ ..+.++|+.+.+-...... ...-.+++.. ++.+++.|+.++ .+..||+.+.+-
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 4555666654 3588889887654432211 1111222222 456677776543 467888877654
Q ss_pred EEEecC------CCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCCCceee
Q 002086 630 VDWTDL------HEMVTAACYTPDGQNALIGSHK----GSCRLYSIEDSKLHQ 672 (969)
Q Consensus 630 ~~~~~~------~~~V~sv~fspdg~~Lasgs~d----g~I~IwDl~~~~~~~ 672 (969)
...... .... .++. -+++.++.++.+ ..+.+||+.+.+...
T Consensus 307 ~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 307 FHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred EeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEE
Confidence 332211 1111 1222 256777777655 468899998876543
No 480
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=52.67 E-value=3.2e+02 Score=29.31 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=78.1
Q ss_pred CCCeEEEEEecCCCCEEEEEECC---------CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEE-EEeCCCcEEEE
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLD---------AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNAL-IGSHKGSCRLY 663 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~D---------g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~La-sgs~dg~I~Iw 663 (969)
+...+.-..+| ++++++-.-.| |.++.|-.. +++......-..-+.++|+.+.+.+. +-+.+-.|.-|
T Consensus 108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCC-CCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 44556667788 77774432222 344444332 22222222223346788888777655 45566778667
Q ss_pred E--cCCCceeeeeee-eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 664 S--IEDSKLHQLNQV-DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 664 D--l~~~~~~~~~~~-~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
| ..++.+.....+ .+........-..-.++....| .+++++-..++|...|..+.....+..-....+++++|--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 666655432222 1111111111122234445455 6777777788999999776665555544567799999953
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.19 E-value=1e+02 Score=40.40 Aligned_cols=144 Identities=10% Similarity=0.162 Sum_probs=82.7
Q ss_pred CCCeEEEEeCCC-ceEEEEecCCCCEEEEEE--------ccCCCEEEEEeCCCcEEEEEcCCCceeeeeee-eecccccC
Q 002086 615 LDAKVRIWSISD-RLVVDWTDLHEMVTAACY--------TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV-DFQTKKKS 684 (969)
Q Consensus 615 ~Dg~I~IWDl~~-~~~~~~~~~~~~V~sv~f--------spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~-~~~~~~~~ 684 (969)
.|..+.+|+..+ ++...+-+....|..+.+ .|.=+++++-..--.|.|+-+.-.+......+ .-......
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 578899999988 444444444455555433 33335555555555666665543322111100 00011123
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEE--e------CCcc-------------eE-EEEee-cCCCCeEEEEEeCCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRIL--D------GLDI-------------VH-KFRGF-RNTSSQISAAFNADG 741 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw--D------~~~~-------------~~-~~~~~-~~~~~V~sl~fspdg 741 (969)
....|.++....+| .++.++.||.|+=. . ...+ .. .+... .+..+|..+.+....
T Consensus 177 dg~~V~~I~~t~nG--RIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENG--RIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCC--cEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 45678888866655 56666677754422 1 0100 00 11112 345578899998888
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 002086 742 KYIISASEDSQVYVWKREE 760 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t 760 (969)
..|.+-++.|+|.+|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999986
No 482
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=50.60 E-value=37 Score=41.27 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=25.8
Q ss_pred CeEEEEEeC----CCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 731 SQISAAFNA----DGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 731 ~V~sl~fsp----dg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
.+..++++. +..+|++-+.|+.|++||+.++++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 345566666 778999999999999999999877
No 483
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=50.33 E-value=3.8e+02 Score=29.48 Aligned_cols=179 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred EEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC
Q 002086 558 LDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 558 ~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~ 635 (969)
..|+-.+ +..-+++...+.|--.|..+|+....- +....-..|...| ++..-++-+.. -|.-.|-++.++..+.-.
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecc
Q ss_pred C----CCEEEEEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 636 H----EMVTAACYTPDGQNALIGSH---------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 636 ~----~~V~sv~fspdg~~Lasgs~---------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
. .......|.+.|.+-+++.. .+.|++|+ ......-+.|+..|+| ...
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfp------------------aPqG~gpyGi~atpdG-svw 203 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFP------------------APQGGGPYGICATPDG-SVW 203 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeec------------------cCCCCCCcceEECCCC-cEE
Q ss_pred EEEeCCCcEEEEeCCcceEEEEeecCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 703 LVTSADSRIRILDGLDIVHKFRGFRNT--SSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~~~~~~~~~--~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
++.-.+..|-..|.............. .....+--+|.|+.-+|-...+.++.||
T Consensus 204 yaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfd 260 (353)
T COG4257 204 YASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFD 260 (353)
T ss_pred EEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeC
No 484
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=50.06 E-value=75 Score=38.84 Aligned_cols=72 Identities=13% Similarity=0.244 Sum_probs=49.9
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
.....++++.-+| .+.-++.+..||.|++|+..............+-..+.|...| |++.+.|..+.-|.-.
T Consensus 12 k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc
Confidence 4456678888899 8999999999999999998665443333333444555665544 5666667777777543
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.95 E-value=2.8e+02 Score=30.66 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=60.1
Q ss_pred CeEEEEeCCCceEEEEe-cCCCCEEEEEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 617 AKVRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGS------HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs------~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
..|++||..+.+-...- ...+.|+.+.|..+.+.++.|. ....+..||+.+......... ....-.++|
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~----~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGG----SSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCc----ccccCCCcE
Confidence 35999998877644332 2457799999997766666664 355788899887764322110 001234778
Q ss_pred EEEEEcCCCC-ceEEEEe-CC--CcEEEEeCCcce
Q 002086 690 TGFQFSPSNP-SEVLVTS-AD--SRIRILDGLDIV 720 (969)
Q Consensus 690 t~l~fspd~~-~~l~sgs-~D--g~I~IwD~~~~~ 720 (969)
+.+.+...+. ..++.|. .+ ..|..||..+..
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 8888754433 3444443 23 347778755433
No 486
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=49.61 E-value=5.4e+02 Score=31.96 Aligned_cols=154 Identities=15% Similarity=0.243 Sum_probs=81.9
Q ss_pred CCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEE--Ee--ecC------CCeEEEEEecCCCCEEEEEEC-C---Ce
Q 002086 554 LDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLK--LF--AHN------DYVTCIQFNPMDDDYFISGSL-D---AK 618 (969)
Q Consensus 554 ~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~--~~--~h~------~~V~sv~fsp~~~~~L~sgs~-D---g~ 618 (969)
.+.|.++.|.. +..+++.-..|.|.+||...+.... .. .+. ..|.....-. ...++++.+. + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~-~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN-GKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc-CCceEEEEEEcCCCcEE
Confidence 56788999986 8899999999999999993322211 11 222 2222222111 2345555444 3 23
Q ss_pred EEEEeC--CCceEEEEe---cCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEE
Q 002086 619 VRIWSI--SDRLVVDWT---DLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692 (969)
Q Consensus 619 I~IWDl--~~~~~~~~~---~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l 692 (969)
.+++.+ ....+.... ..........|.- +|..... .+++|.+|++...+......++... ......+.++
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii--~~~~~~~vSl 283 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSII--DKESDDLVSL 283 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhh--ccccccceEe
Confidence 677777 444444332 1222222233332 4443333 6889999999888776655543111 1111223333
Q ss_pred -EEcCCCCceEEEEeCCCcEEEEeC
Q 002086 693 -QFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 693 -~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
..++ ..++. +.+..|++.|.
T Consensus 284 ~~~s~---nRvLL-s~~nkIyLld~ 304 (670)
T PF10395_consen 284 KPPSP---NRVLL-SVNNKIYLLDL 304 (670)
T ss_pred ecCCC---CeEEE-EcCCEEEEEee
Confidence 2233 33443 34678999983
No 487
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=48.85 E-value=6.6 Score=34.25 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=32.1
Q ss_pred CccccCCCCCCCCccccccCCCCCCccccCCCccccCC
Q 002086 846 NKVERVPSPPEEELSLISHDPGISESFTSNSSSIRSGD 883 (969)
Q Consensus 846 ~~~~~~l~~pee~l~~is~hP~~~~~~~~s~~~~r~~~ 883 (969)
........+|.|++++++|.-||+++++|++.+.++-.
T Consensus 10 ~~v~~~~F~PfEDvLgvGh~~G~sSiiVPGsGe~NfDs 47 (80)
T PF08149_consen 10 SPVESLRFCPFEDVLGVGHSKGFSSIIVPGSGEPNFDS 47 (80)
T ss_pred CeeeeeEEechHHeeEeeccCceeEEeccCCCCCCCCc
Confidence 34445568999999999999999999999988888765
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=48.46 E-value=28 Score=42.24 Aligned_cols=39 Identities=15% Similarity=0.400 Sum_probs=29.2
Q ss_pred cCEEEEEEeC----CCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 452 GSIWTIKFSL----DARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 452 ~~I~~l~fSp----Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
+.+..++++. +..+|++.+.|+++|+||+.+++++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 4455556655 67799999999999999999999977543
No 489
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=46.92 E-value=3.3e+02 Score=35.73 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=81.3
Q ss_pred cEEEEEe---------CCCcEEEEECCC-----Cc-----EEEEe---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 566 HLLLSSS---------MDKTVRLWDMET-----KS-----CLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 566 ~~L~Sgs---------~DgtV~IWDl~t-----~~-----~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.+|++|. ..|.+.|+|+-. ++ .++.+ ..+++|..++=- +| +|+++ ...+|.||+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV--~G-~l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV--RG-HLLSS-QGQKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe--cc-EEEEc-cCcEEEEEE
Confidence 5777774 348899999742 22 22332 567888888764 34 44444 346899999
Q ss_pred C-CCceEE--EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 624 I-SDRLVV--DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 624 l-~~~~~~--~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
+ +...++ .+...+ +......--.++|+.|.--..|.+.-.......... .......-.++++.|--+|..
T Consensus 1123 l~r~~~ligVaFiD~~--~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL-----~srd~~~l~v~s~EFLVdg~~ 1195 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLP--LYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSL-----LSRDFEPLNVYSTEFLVDGSN 1195 (1366)
T ss_pred eccCCcceeeEEeccc--eeEEehhhhhhheehhhhhhceEEEEEccCceEEEE-----eecCCchhhceeeeeEEcCCe
Confidence 9 554443 333332 333333334567777777777776655443221110 011333456777778776644
Q ss_pred -eEEEEeCCCcEEEEe
Q 002086 701 -EVLVTSADSRIRILD 715 (969)
Q Consensus 701 -~l~sgs~Dg~I~IwD 715 (969)
.++++..+++|++|-
T Consensus 1196 L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1196 LSFLVSDADRNIHVYM 1211 (1366)
T ss_pred eEEEEEcCCCcEEEEE
Confidence 467778899988875
No 490
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=45.16 E-value=4.4e+02 Score=28.63 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=82.9
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEE----EccCCCE--EEEEe--CCCcEEEEEcCCC
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAAC----YTPDGQN--ALIGS--HKGSCRLYSIEDS 668 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~----fspdg~~--Lasgs--~dg~I~IwDl~~~ 668 (969)
|+--.-+| +...+++.-..+-+++||+...++....... ...+. |--.|+. |++++ ....|.+|.+...
T Consensus 58 IwVh~t~P-~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk--~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~ 134 (364)
T COG4247 58 IWVHATNP-DKSLVITTVKKAGLRVYDLSGKQLQSVNPGK--YNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPN 134 (364)
T ss_pred eEeccCCc-CcceEEEeeccCCeEEEecCCCeeeecCCCc--ccccccccCcccCCeEEEEEecccccCCeEEEEEeCCC
Confidence 34444566 7788888888889999999877665543322 11111 2223332 33443 2457888887765
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcC--C-CCceEEEEeCCCcEEEEeCC---------cceEEEEeecCCCCeEEEE
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSP--S-NPSEVLVTSADSRIRILDGL---------DIVHKFRGFRNTSSQISAA 736 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fsp--d-~~~~l~sgs~Dg~I~IwD~~---------~~~~~~~~~~~~~~V~sl~ 736 (969)
....................+..++... . +..++++...+|.|.-|.+. +.++.++... .-..|.
T Consensus 135 ~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t---QTEG~V 211 (364)
T COG4247 135 PQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPT---QTEGMV 211 (364)
T ss_pred ccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCC---ccccee
Confidence 4322211111112233345566666543 2 55677888888988887632 1222222211 112233
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 737 FNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 737 fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
....-.+|..+-+| +-||++..
T Consensus 212 aDdEtG~LYIaeEd--vaiWK~~A 233 (364)
T COG4247 212 ADDETGFLYIAEED--VAIWKYEA 233 (364)
T ss_pred eccccceEEEeecc--ceeeeccc
Confidence 33333456666554 77898864
No 491
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.59 E-value=4.1e+02 Score=28.12 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=66.6
Q ss_pred EEEecCCcEEEEEeC--CCcEEEEECCCCcEEEEeecC-CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC
Q 002086 559 DLSWSRSHLLLSSSM--DKTVRLWDMETKSCLKLFAHN-DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 559 ~l~fs~~~~L~Sgs~--DgtV~IWDl~t~~~i~~~~h~-~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~ 635 (969)
.+.+..+.++.+.+. ...|++||+.+++.+....-. ..+..=-.....+.+..-.-.+|.-.++|.++-+.+..+..
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 445555666766664 346999999999887654221 11111111110112222334578888999888777666555
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 636 HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
.+.=..++. |++.|+.+....+++.-|..+.......
T Consensus 130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceE
Confidence 555555544 5566777776777777777665544433
No 492
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=43.49 E-value=84 Score=22.92 Aligned_cols=32 Identities=9% Similarity=0.253 Sum_probs=21.0
Q ss_pred ecccccCEEEEEEeCCCCEEEEEe-CC--CcEEEE
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAG-ED--RVIHVW 478 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs-~D--gtVrIW 478 (969)
+.-..+......|||||++|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344566788999999999776554 45 666665
No 493
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=40.69 E-value=3.4e+02 Score=31.70 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
..|..++..+.. ..+++.+.++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 448899998877 7999999999999999754
No 494
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=40.46 E-value=6e+02 Score=28.91 Aligned_cols=191 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCC---CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCC-CEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHND---YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE-MVT 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~---~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~-~V~ 640 (969)
+..+..+..+|.|.-.|..++..+-...... .+.+-.+.. ++. |+.++.+|.++.+|..+++.+-...... ...
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC--CCcEEEEeCCc
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA--DSRIRILDGLD 718 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~--Dg~I~IwD~~~ 718 (969)
.-..-.....+..++.++.+.-.+..++...-....... ....-..... ..++ .++.+.. ++.+.-.|...
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~----~~~~--~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA----IASG--TVYVGSDGYDGILYALNAED 218 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCce----eecc--eEEEecCCCcceEEEEEccC
Q ss_pred ceEEEE----eecCCCCe--EEEEEeC---CCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 719 IVHKFR----GFRNTSSQ--ISAAFNA---DGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 719 ~~~~~~----~~~~~~~V--~sl~fsp---dg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
...... .......+ +...-.+ .+..+..++.++.+...+..+++.+
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceE
No 495
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.74 E-value=3.1e+02 Score=32.67 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEe------------CCc-ceEEE-------EeecCCCCeEEEEEeCCC---CEE
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILD------------GLD-IVHKF-------RGFRNTSSQISAAFNADG---KYI 744 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD------------~~~-~~~~~-------~~~~~~~~V~sl~fspdg---~~L 744 (969)
.|..+..++.| ..++..+.+|.+.++= ... ..+.. ......-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 46777788887 6777777777755531 100 11111 111123345678999975 677
Q ss_pred EEEeCCCcEEEEEcCCCCc
Q 002086 745 ISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 745 aSgs~Dg~I~IWdl~t~~~ 763 (969)
..-+.|..|+||++.+.+.
T Consensus 184 ~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEecCcEEEEEecCCcch
Confidence 7788899999999987643
No 496
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=36.65 E-value=1e+03 Score=30.38 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=46.5
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe-------------------ecCCCCeEEEEEeCCCCEEEE
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-------------------FRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-------------------~~~~~~V~sl~fspdg~~LaS 746 (969)
.+.|.++.....+ ..++.+..||+|.++|..+....... +.....+..++|||.+.-++.
T Consensus 259 ~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 3567777776665 68999999999999994432111100 111123445889999999999
Q ss_pred EeCCCcEE
Q 002086 747 ASEDSQVY 754 (969)
Q Consensus 747 gs~Dg~I~ 754 (969)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 99999966
No 497
>TIGR00664 DNA_III_psi DNA polymerase III, psi subunit. This small subunit of the DNA polymerase III holoenzyme in E. coli and related species appearsto have a narrow taxonomic distribution. It is not found so far outside the gamma subdivision proteobacteria.
Probab=36.58 E-value=16 Score=35.42 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=16.3
Q ss_pred HHHHHHhHhhcCCCC----Cccccc
Q 002086 107 TERRKRLFQDMGLSR----DRELLS 127 (969)
Q Consensus 107 ~~~~~~~~~~~~~~~----~~~~~~ 127 (969)
..||.+|||+||++- .|+.++
T Consensus 2 ~~rrd~lLqeMGItqW~Lr~P~~L~ 26 (133)
T TIGR00664 2 NSRRDLLLQELGISQWELRRPEALQ 26 (133)
T ss_pred ccHHHHHHHHcCCceEEecCccccc
Confidence 579999999999983 555554
No 498
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=36.24 E-value=1.1e+02 Score=22.41 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=25.7
Q ss_pred CCCEEEE-EECCCeEEEEeCCCceEEEEecCCCCEEEEEE
Q 002086 606 DDDYFIS-GSLDAKVRIWSISDRLVVDWTDLHEMVTAACY 644 (969)
Q Consensus 606 ~~~~L~s-gs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~f 644 (969)
++++|++ .-.++.|.++|..+++.+...........++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4554544 44678999999988887766555444445544
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=36.03 E-value=1.5e+02 Score=29.95 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCc------------eeeeeeeeecccccCCCC---------------------
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSK------------LHQLNQVDFQTKKKSSTR--------------------- 687 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~------------~~~~~~~~~~~~~~~h~~--------------------- 687 (969)
+++|+.||+..++. +..|.|.+..... ..................
T Consensus 9 ~l~WS~Dg~laV~t--~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~ 86 (173)
T PF12657_consen 9 ALAWSEDGQLAVAT--GESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISSS 86 (173)
T ss_pred CeeECCCCCEEEEc--CCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccccc
Q ss_pred CeEEEEEcCCC-----CceEEEEeCCCcEEEE
Q 002086 688 KITGFQFSPSN-----PSEVLVTSADSRIRIL 714 (969)
Q Consensus 688 ~It~l~fspd~-----~~~l~sgs~Dg~I~Iw 714 (969)
.+..++|+|.| ..+|++.+.++.|.||
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~ 118 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLY 118 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEE
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=35.64 E-value=1.6e+02 Score=34.20 Aligned_cols=162 Identities=11% Similarity=0.105 Sum_probs=90.2
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE--EEecC-CC----CEE-EEEEccCCCEEEEEeCCCcEEEE-
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV--DWTDL-HE----MVT-AACYTPDGQNALIGSHKGSCRLY- 663 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~--~~~~~-~~----~V~-sv~fspdg~~Lasgs~dg~I~Iw- 663 (969)
-...|..+-..| +++.++.-+. ..+.++++.+.... ++... .+ .|+ .+..-..|..+++++.||.|.-|
T Consensus 219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 446677888899 8887776654 67888888665332 11111 11 122 22233456788899999988776
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCE
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~ 743 (969)
|++.........+ ...+-....+..+.- ..+.+-+++-+.+|++.++........+.... ...+.-+++||.+.+
T Consensus 297 dvr~~~~p~l~h~---R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 297 DVRRDGQPHLNHI---RNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQAY 371 (733)
T ss_pred eeecCCCCcceee---eccccCcccceeecc-ccccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCcccch
Confidence 5544322111111 000111122222211 12224566667788888776433222222111 123456789999999
Q ss_pred EEEEeCCCcEEEEEcCCCC
Q 002086 744 IISASEDSQVYVWKREEHR 762 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t~~ 762 (969)
|++-. .|.|+++.+++..
T Consensus 372 Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 372 LLSED-QGKIRLAQLENRN 389 (733)
T ss_pred heeec-CCceEEEEecCCC
Confidence 98765 5789999998753
Done!